Citrus Sinensis ID: 044346

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
MGVADKGRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLCSSMHR
Secondary Structure (PSIPRED)
cccccccccEEEEEEEEEEEEEcccccccccccccEEEEEEccEEEEEEEEccccccEEccEEEEEEccccccEEEEEEEccccccccccEEEEEEcccccccEEEccccccEEEEEEEEccccccEEEEEEEEEEEccccccccccEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHcccccEEEEEEEEEEcccccEccccccccEEEEEEcccEEEEEEEEcccccccccEEEEEEccccccEEEEEEEccccccccccccEEEEcHHHHHHcccccccccEEEEEEEEEEEccccEEEEEEEEEEccccccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
mgvadkgrrTSLLSLRLRIKQGVNLaihdhsgsdpCVFVMMAKENIKirfignnvnpewnevfpfsttypnvpimlsvcdhdsftkddrmkdAKIDIREYMKDVKinleprnavkdldlkltniecgklQVQLRycnlpgskgfIMFYECSSLCSSMHR
Flexible Loop (DISEMBL)
mgvadkgrrtsLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCdhdsftkddrMKDAKIDIREYMkdvkinleprnavkdldlkLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLCSSMHR
Low Complexity Region (SEG)
MGVADKGrrtsllslrlrIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLCSSMHR
Disordered region (IsUnstruct)
***********LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLC*****
Disordered Region (DISOPRED)
**************LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGS***********LCS****
Disordered Region (DISEMBL)
********RTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLCSSMHR
Disordered Region (DISPRO)
********RTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGVADKGRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGFIMFYECSSLCSSMHR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q8L7A4	385	Probable ADP-ribosylation	no	no	0.754	0.311	0.308	1e-14
Q8LFN9	336	Probable ADP-ribosylation	no	no	0.779	0.369	0.287	1e-13
Q9FVJ3	337	ADP-ribosylation factor G	no	no	0.779	0.367	0.267	4e-13
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.534	0.083	0.290	8e-07
A3KGK3	1992	Fer-1-like protein 4 OS=M	yes	no	0.534	0.042	0.359	1e-05
Q69ZN7	2048	Myoferlin OS=Mus musculus	no	no	0.534	0.041	0.303	3e-05
Q6DN14	999	Multiple C2 and transmemb	yes	no	0.584	0.093	0.313	0.0001
A9Z1Z3	1794	Fer-1-like protein 4 OS=H	no	no	0.534	0.047	0.314	0.0002
Q0JBH9	144	Elicitor-responsive prote	no	no	0.496	0.548	0.294	0.0002
Q25AG5	144	Elicitor-responsive prote	N/A	no	0.496	0.548	0.294	0.0002

>sp|Q8L7A4|AGD11_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD11 OS=Arabidopsis thaliana GN=AGD11 PE=2 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 29/149 (19%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           +++ + +G NLA+ D   SDP V + + ++++K R I NN+NP WNE    S   P  P+
Sbjct: 231 IKVNVVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPL 290

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVK----------------------------- 105
            + V D D+F+ DD M +A+IDI+  +   K                             
Sbjct: 291 KVLVYDKDTFSTDDFMGEAEIDIQPLVSAAKAYETSSIKEPMQLGSWVASKENTLVSDGI 350

Query: 106 INLEPRNAVKDLDLKLTNIECGKLQVQLR 134
           I LE     +D+ L+L N+E G L++QL 
Sbjct: 351 ILLEDGKVKQDISLRLQNVERGVLEIQLE 379

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LFN9|AGD13_ARATH Probable ADP-ribosylation factor GTPase-activating protein AGD13 OS=Arabidopsis thaliana GN=AGD13 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/153 (28%), Positives = 77/153 (50%), Gaps = 29/153 (18%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           L++ IK+G NLAI D   SDP V + + K+ ++   + +N+NP WN+    S      P+
Sbjct: 182 LKVTIKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPV 241

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIR---------------------EYMK--------DVK 105
            L V D+D+F+ DD M +A IDI+                     +++K        D  
Sbjct: 242 KLQVYDYDTFSADDIMGEADIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNPLIDDSI 301

Query: 106 INLEPRNAVKDLDLKLTNIECGKLQVQLRYCNL 138
           IN+      +++ +KL N+E G+L++++ +  L
Sbjct: 302 INIVDGKVKQEVQIKLQNVESGELELEMEWLPL 334

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF).

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FVJ3|AGD12_ARATH ADP-ribosylation factor GTPase-activating protein AGD12 OS=Arabidopsis thaliana GN=AGD12 PE=1 SV=1

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/153 (26%), Positives = 75/153 (49%), Gaps = 29/153 (18%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           L++ IK+G N+AI D   SDP V + + ++  +   + +N+NP WNE    S  +    +
Sbjct: 183 LKVTIKKGTNMAIRDMMSSDPYVVLTLGQQKAQSTVVKSNLNPVWNEELMLSVPHNYGSV 242

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIR-----------------------------EYMKDVK 105
            L V D+D+F+ DD M +A+IDI+                               ++D  
Sbjct: 243 KLQVFDYDTFSADDIMGEAEIDIQPLITSAMAFGDPEMFGDMQIGKWLKSHDNALIEDSI 302

Query: 106 INLEPRNAVKDLDLKLTNIECGKLQVQLRYCNL 138
           IN+      +++ +KL N+E G+L++++ +  L
Sbjct: 303 INIADGKVKQEVQIKLQNVESGELELEMEWLPL 335

GTPase-activating protein (GAP) for ADP ribosylation factor (ARF). Binds phosphatidylinositol 3-monophosohate (PI-3-P) and anionic phospholipids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 47/86 (54%), Gaps = 1/86 (1%)

Query: 13 LSLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN 71
          + L++R+ +  NL   D +G SDP V + + K+  + + +  N+NP+W E F F     N
Sbjct: 1  MKLQVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVDDLN 60

Query: 72 VPIMLSVCDHDSFTKDDRMKDAKIDI 97
            +++SV D D +  DD +   ++ +
Sbjct: 61 DELVVSVLDEDKYFNDDFVGQVRVSV 86

Arabidopsis thaliana (taxid: 3702)

>sp|A3KGK3|FR1L4_MOUSE Fer-1-like protein 4 OS=Mus musculus GN=Fer1l4 PE=2 SV=3

 Score = 49.3 bits (116), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 48/89 (53%), Gaps = 4/89 (4%)

Query: 13   LSLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKE--NIKIRFIGNNVNPEWNEVFPFSTTY 69
            L +R+ I +  NLA  D +G +DP V V   KE  + K R+I   +NP + EV   S + 
Sbjct: 1448 LLVRVYIVKATNLAPADPNGKADPYVVVSAGKEQRDTKERYIPKQLNPIFGEVLELSVSL 1507

Query: 70   PNVP-IMLSVCDHDSFTKDDRMKDAKIDI 97
            P  P + ++V DHD    DD + +  ID+
Sbjct: 1508 PAQPELTVAVFDHDLVGSDDLIGETHIDL 1536

Mus musculus (taxid: 10090)

>sp|Q69ZN7|MYOF_MOUSE Myoferlin OS=Mus musculus GN=Myof PE=1 SV=2

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 53/89 (59%), Gaps = 4/89 (4%)

Query: 14   SLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIR--FIGNNVNPEWNEVFPFSTTYP 70
            ++R+ I QG+ L   D++G  DP + + + K+ I+ R  +I N +NP +  ++  S   P
Sbjct: 1541 TVRIYIVQGLQLQPQDNNGLCDPYIKITLGKKVIEDRDHYIPNTLNPVFGRMYELSCYLP 1600

Query: 71   NVP-IMLSVCDHDSFTKDDRMKDAKIDIR 98
                + +SV D+D+FT+D+++ +  ID+ 
Sbjct: 1601 QEKDLKISVYDYDTFTRDEKVGETTIDLE 1629

Calcium/phospholipid-binding protein that plays a role in the plasmalemma repair mechanism of endothelial cells that permits rapid resealing of membranes disrupted by mechanical stress. Involved in endocytic recycling. Implicated in VEGF signal transduction by regulating the levels of the receptor KDR.

Mus musculus (taxid: 10090)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 3   VADKGRRTSLLSLRLRIKQGVNLAIHDHSG-SDPCV-FVMMAKENIKIRFIGNNVNPEWN 60
           +AD G    +  L + +++G +LA  D  G SDP V F +  KE  + + I  N+NP W 
Sbjct: 255 LADPG----MYQLDITLRRGQSLAARDRGGTSDPYVKFKIGGKEVFRSKIIHKNLNPVWE 310

Query: 61  EVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIRE 99
           E       +   P+ + V D+D   +DD M  A +D+ +
Sbjct: 311 EKACILVDHLREPLYIKVFDYDFGLQDDFMGSAFLDLTQ 349

Homo sapiens (taxid: 9606)

>sp|A9Z1Z3|FR1L4_HUMAN Fer-1-like protein 4 OS=Homo sapiens GN=FER1L4 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 13   LSLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKE--NIKIRFIGNNVNPEWNEVFPFSTTY 69
            L +R+ + +  NLA  D +G +DP V V   +E  + K R+I   +NP + E+   S + 
Sbjct: 1249 LLVRVYVVKATNLAPADPNGKADPYVVVSAGRERQDTKERYIPKQLNPIFGEILELSISL 1308

Query: 70   P-NVPIMLSVCDHDSFTKDDRMKDAKIDI 97
            P    + ++V DHD    DD + +  ID+
Sbjct: 1309 PAETELTVAVFDHDLVGSDDLIGETHIDL 1337

Homo sapiens (taxid: 9606)

>sp|Q0JBH9|ERG3_ORYSJ Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 52  GNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPR 111
           G   +PEWNE F FS T+    +++ + D DS T DD + +A I +     +  I     
Sbjct: 45  GKGSDPEWNETFMFSVTHNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVY 104

Query: 112 NAVKDLDLKLTNIECGKLQVQLRYC 136
           N VK+ + +      G+++V L + 
Sbjct: 105 NVVKEEEYR------GEIKVGLTFT 123

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q25AG5|ERG3_ORYSI Elicitor-responsive protein 3 OS=Oryza sativa subsp. indica GN=ERG3 PE=2 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 52  GNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPR 111
           G   +PEWNE F FS T+    +++ + D DS T DD + +A I +     +  I     
Sbjct: 45  GKGSDPEWNETFMFSVTHNATELIIKLMDSDSGTDDDFVGEATISLEAIYTEGSIPPTVY 104

Query: 112 NAVKDLDLKLTNIECGKLQVQLRYC 136
           N VK+ + +      G+++V L + 
Sbjct: 105 NVVKEEEYR------GEIKVGLTFT 123

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
255579281	183	ARF GTPase activator, putative [Ricinus	0.899	0.781	0.393	4e-29
30684739	177	calcium-dependent lipid-binding domain-c	0.905	0.813	0.395	2e-27
224118650	165	predicted protein [Populus trichocarpa]	0.817	0.787	0.398	6e-27
225456169	181	PREDICTED: probable ADP-ribosylation fac	0.817	0.718	0.392	7e-27
147805778	165	hypothetical protein VITISV_014376 [Viti	0.817	0.787	0.392	8e-27
388513529	168	unknown [Lotus japonicus]	0.817	0.773	0.398	3e-26
357521665	182	Pollen-specific C2 domain containing pro	0.817	0.714	0.405	3e-26
356520677	176	PREDICTED: ADP-ribosylation factor GTPas	0.817	0.738	0.392	6e-26
388493004	168	unknown [Lotus japonicus]	0.817	0.773	0.398	8e-26
356512968	173	PREDICTED: probable ADP-ribosylation fac	0.905	0.832	0.393	1e-25

>gi|255579281|ref|XP_002530486.1| ARF GTPase activator, putative [Ricinus communis] gi|223529983|gb|EEF31909.1| ARF GTPase activator, putative [Ricinus communis]

 Score =  132 bits (333), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 104/178 (58%), Gaps = 35/178 (19%)

Query: 2   GVADKGRRTS-------LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNN 54
           G  + G++TS       L  LR+R+K+GVNLA+ D   SDP + V M K+ +K R I  +
Sbjct: 6   GSPESGKKTSSSLMENLLGLLRIRVKRGVNLAVRDVRSSDPYIVVKMGKQKLKTRVIKKD 65

Query: 55  VNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINL------ 108
           VNPEWNE    S   P +P+ L+V DHD+F+KDD+M DA+ DIR Y++ +++NL      
Sbjct: 66  VNPEWNEDLTLSVIDPTLPVKLTVYDHDTFSKDDKMGDAEFDIRPYIEALRMNLAGFPTG 125

Query: 109 ------EPR----------------NAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                 +P                   V+DL L+L N+ECG++++QL++ +LPGSKG 
Sbjct: 126 TIIKRIQPSRQNCLSEETCITYTDGKVVQDLCLRLRNVECGEVEIQLQWIDLPGSKGL 183

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30684739|ref|NP_188425.2| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|297830434|ref|XP_002883099.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|9294500|dbj|BAB02719.1| GTPase activating protein-like [Arabidopsis thaliana] gi|62867625|gb|AAY17416.1| At3g17980 [Arabidopsis thaliana] gi|149944327|gb|ABR46206.1| At3g17980 [Arabidopsis thaliana] gi|297328939|gb|EFH59358.1| C2 domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|332642510|gb|AEE76031.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  126 bits (317), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 70/177 (39%), Positives = 103/177 (58%), Gaps = 33/177 (18%)

Query: 1   MGVADKGRRTSLLS-----LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNV 55
           M  A   R +SL+      LR+RIK+GVNLA+ D S SDP V V M K+ +K R I  +V
Sbjct: 1   MTTACPARTSSLMDDLLGLLRIRIKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDV 60

Query: 56  NPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEP----- 110
           NPEWNE    S T  N+ ++L+V DHD F+KDD+M DA+ +I+ Y++ +++ L+      
Sbjct: 61  NPEWNEDLTLSVTDSNLTVLLTVYDHDMFSKDDKMGDAEFEIKPYIEALRMQLDGLPSGT 120

Query: 111 ---------RNA--------------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                    RN               V+DL L+L ++ECG+++ QL++ +LPGSKG 
Sbjct: 121 IVTTVKPSRRNCLAEESRVTWVDGKLVQDLVLRLRHVECGEVEAQLQWIDLPGSKGL 177

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118650|ref|XP_002317873.1| predicted protein [Populus trichocarpa] gi|222858546|gb|EEE96093.1| predicted protein [Populus trichocarpa]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 92/158 (58%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+R+K+G+NLA+ D   SDP V + M  + +K R I  +VNP WNE    S T PN+P+
Sbjct: 8   LRIRVKRGINLAVRDVRSSDPYVVIRMGNQKLKTRVIKKDVNPHWNEDLTLSVTDPNLPV 67

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINL------------EPR----------- 111
            L V DHD FTKDD+M +A+ DIR +++ +K+NL            +P            
Sbjct: 68  KLIVYDHDLFTKDDKMGEAEFDIRPFIETLKMNLAGVSSGTVITRIQPSRQNCLSEDSCI 127

Query: 112 -----NAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+DL L+L N+ECG+L++QL++   P S+GF
Sbjct: 128 IYSDGKVVQDLYLRLKNVECGELEIQLQWITFPSSRGF 165

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225456169|ref|XP_002282569.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Vitis vinifera]

 Score =  125 bits (313), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+R+K+G+NLA+ D   SDP   + M K+ +K R +  NVNPEWNE    S + PN+PI
Sbjct: 24  LRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSISDPNLPI 83

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA------------------- 113
            L+V DHD+F+KDD+M DA+  I  Y++ ++++LE  P                      
Sbjct: 84  KLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNCLAEESCI 143

Query: 114 -------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L N+ECG++++QL++ +LPGSKG 
Sbjct: 144 VWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805778|emb|CAN69475.1| hypothetical protein VITISV_014376 [Vitis vinifera] gi|297734335|emb|CBI15582.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (313), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 95/158 (60%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+R+K+G+NLA+ D   SDP   + M K+ +K R +  NVNPEWNE    S + PN+PI
Sbjct: 8   LRVRVKRGINLAVRDVRSSDPYAVIKMGKQKLKTRVMKKNVNPEWNEDLTLSISDPNLPI 67

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA------------------- 113
            L+V DHD+F+KDD+M DA+  I  Y++ ++++LE  P                      
Sbjct: 68  KLTVYDHDTFSKDDKMGDAEFTINPYLEALRMHLEGLPSGTIISRVQPSRQNCLAEESCI 127

Query: 114 -------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L N+ECG++++QL++ +LPGSKG 
Sbjct: 128 VWTDGRVVQDICLRLRNVECGEVELQLQWIDLPGSKGL 165

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513529|gb|AFK44826.1| unknown [Lotus japonicus]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 96/158 (60%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+RIK+GVNLA+ D + SDP V V M K+ +K R I  ++NPEWNE    S T P  P 
Sbjct: 8   LRIRIKRGVNLAVRDVNTSDPYVVVKMGKQKLKTRVIHKDINPEWNEDLTLSITDPFKPF 67

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA------------------- 113
           +L+V DHD+F+KDD+M DA+ D+  +++ +K+NLE  P                      
Sbjct: 68  VLTVYDHDTFSKDDKMGDAEFDLSPFIEALKMNLEGLPSGTIVTRVQPCRTNCLAEESCI 127

Query: 114 -------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L ++ECG++++QL++ +LPG+KG 
Sbjct: 128 TVNDGKVVQDVVLRLRHVECGEVEIQLQWIDLPGAKGL 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357521665|ref|XP_003631121.1| Pollen-specific C2 domain containing protein [Medicago truncatula] gi|355525143|gb|AET05597.1| Pollen-specific C2 domain containing protein [Medicago truncatula]

 Score =  123 bits (308), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 64/158 (40%), Positives = 93/158 (58%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+RIK+GVNLA+ D + SDP   V M K+ +K   I  +VNPEWNE    S T P VP 
Sbjct: 24  LRIRIKRGVNLAVRDVNTSDPYAVVKMGKQRLKTHVIKKDVNPEWNEDLTLSITDPVVPF 83

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA------------------- 113
            L+V D+D+F+KDD+M DA+ D+  Y++ +K NLE  P                      
Sbjct: 84  KLTVYDYDTFSKDDKMGDAEFDLSPYIEALKTNLEGLPEGTIITRIQPCRQNCLSEESCI 143

Query: 114 -------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L N+ECG++++QL++ +LPG+KG 
Sbjct: 144 TYSDGKVVQDVVLRLRNVECGEVEIQLQWIDLPGAKGL 181

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520677|ref|XP_003528987.1| PREDICTED: ADP-ribosylation factor GTPase-activating protein AGD12-like [Glycine max]

 Score =  122 bits (306), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 62/158 (39%), Positives = 94/158 (59%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+R+K+GVNLA+ D   SDP V + M ++ +K R I  +VNPEWNE    S   PN  +
Sbjct: 19  LRVRVKRGVNLAVRDVRSSDPYVVIKMYRQKLKTRVIKKDVNPEWNEDLTLSVINPNHKV 78

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINL------------EPR----------- 111
            L+V DHD+F+KDD+M DA+ DI  +++ +K+NL            +P            
Sbjct: 79  KLTVYDHDTFSKDDKMGDAEFDILPFIEALKMNLTGLANGTVVTRIQPSKHNCLVDESCI 138

Query: 112 -----NAVKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L N+ECG++++QL++ +LPGSKG 
Sbjct: 139 TYSNGKVVQDMILRLQNVECGEVEIQLQWIDLPGSKGI 176

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493004|gb|AFK34568.1| unknown [Lotus japonicus]

 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/158 (39%), Positives = 95/158 (60%), Gaps = 28/158 (17%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           LR+RIK+GVNLA+ D + SDP V V M K+ +K R I  ++NPEWNE    S T P  P 
Sbjct: 8   LRIRIKRGVNLAVRDVNTSDPYVVVKMGKQKLKTRVIHKDINPEWNEDLTLSITDPVKPF 67

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA------------------- 113
           +L+V DHD+F+KDD+M DA+ D   +++ +K+NLE  P                      
Sbjct: 68  VLTVYDHDTFSKDDKMGDAEFDPSPFIEALKMNLEGLPSGTIVTRIQPCRTNCLAEESCI 127

Query: 114 -------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                  V+D+ L+L ++ECG++++QL++ +LPG+KG 
Sbjct: 128 AVNDGKVVQDVVLRLRHVECGEVEIQLQWIDLPGAKGL 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512968|ref|XP_003525186.1| PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD11-like [Glycine max]

 Score =  121 bits (303), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 68/173 (39%), Positives = 97/173 (56%), Gaps = 29/173 (16%)

Query: 1   MGVADKGRRTSLLSL-RLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEW 59
           MG   K     LL L R+ IK+GVNLA+ D + SDP   V M K+ +K R I  +VNPEW
Sbjct: 1   MGDTPKSLMEDLLGLLRIHIKRGVNLAVRDVNTSDPYCVVKMGKQKLKTRVIKKDVNPEW 60

Query: 60  NEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNA---- 113
            E    S T P  P +L+V DHD+F+KDD+M DA+ DI  Y++ +K+NLE  P       
Sbjct: 61  KEDLTLSVTDPVHPFILTVYDHDTFSKDDKMGDAEFDISAYIEALKMNLEDLPSGTIITR 120

Query: 114 ----------------------VKDLDLKLTNIECGKLQVQLRYCNLPGSKGF 144
                                 ++D  L+L ++ECG++++QL++ +LPGSKG 
Sbjct: 121 IQPSRQNCLAEESCITYSNGKIIQDAVLRLRHVECGEVEIQLQWIDLPGSKGL 173

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
TAIR|locus:2088505	177	C2 "AT3G17980" [Arabidopsis th	0.572	0.514	0.483	2.5e-28
TAIR|locus:2035042	168	AT1G73580 "AT1G73580" [Arabido	0.566	0.535	0.433	1e-25
TAIR|locus:2014020	165	AT1G70810 "AT1G70810" [Arabido	0.572	0.551	0.428	1.5e-24
TAIR|locus:2049602	180	AT2G01540 "AT2G01540" [Arabido	0.572	0.505	0.461	1.9e-24
TAIR|locus:2014015	174	EHB1 "AT1G70800" [Arabidopsis	0.622	0.568	0.393	1.4e-22
TAIR|locus:2201497	174	AT1G66360 "AT1G66360" [Arabido	0.540	0.494	0.418	5.8e-20
TAIR|locus:2201190	165	AT1G23140 "AT1G23140" [Arabido	0.528	0.509	0.392	3.1e-19
TAIR|locus:2013905	185	AT1G70790 "AT1G70790" [Arabido	0.792	0.681	0.367	6.7e-17
TAIR|locus:2077367	385	AT3G07940 [Arabidopsis thalian	0.547	0.225	0.390	1.1e-16
TAIR|locus:2115904	336	AGD13 "ARF-GAP domain 13" [Ara	0.503	0.238	0.4	3.8e-15

TAIR|locus:2088505 C2 "AT3G17980" [Arabidopsis thaliana (taxid:3702)]

 Score = 238 (88.8 bits), Expect = 2.5e-28, Sum P(2) = 2.5e-28
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             IK+GVNLA+ D S SDP V V M K+ +K R I  +VNPEWNE    S T  N+ ++L+V
Sbjct:    24 IKRGVNLAVRDISSSDPYVVVKMGKQKLKTRVINKDVNPEWNEDLTLSVTDSNLTVLLTV 83

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109
              DHD F+KDD+M DA+ +I+ Y++ +++ L+
Sbjct:    84 YDHDMFSKDDKMGDAEFEIKPYIEALRMQLD 114

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2035042 AT1G73580 "AT1G73580" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 1.0e-25, Sum P(2) = 1.0e-25
 Identities = 39/90 (43%), Positives = 64/90 (71%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +++GVNLA+ D S SDP V + + ++ +K + +  NVNP+W E   F+ T PN+P+ L V
Sbjct:    15 VQRGVNLAVRDVSSSDPYVVLKLGRQKLKTKVVKQNVNPQWQEDLSFTVTDPNLPLTLIV 74

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINL 108
              DHD F+KDD+M DA+ID++ Y++ +++ L
Sbjct:    75 YDHDFFSKDDKMGDAEIDLKPYIEALRMEL 104

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2014020 AT1G70810 "AT1G70810" [Arabidopsis thaliana (taxid:3702)]

 Score = 211 (79.3 bits), Expect = 1.5e-24, Sum P(2) = 1.5e-24
 Identities = 39/91 (42%), Positives = 58/91 (63%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +K+G+NLA  D   SDP V + M  + +K R + NN NPEWNE    +  +P+ P+ L V
Sbjct:    12 VKRGINLAQRDTLSSDPFVVITMGSQKLKTRVVENNCNPEWNEELTLALRHPDEPVNLIV 71

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109
              D D+FT  D+M DAKIDI+ +++  K+ L+
Sbjct:    72 YDKDTFTSHDKMGDAKIDIKPFLEVHKMGLQ 102

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2049602 AT2G01540 "AT2G01540" [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 42/91 (46%), Positives = 60/91 (65%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +K+G+NLAI DH  SDP + + +A + +K R +  N NP WNE    +   PNVPI L+V
Sbjct:    13 VKRGINLAIRDHRSSDPYIVLNVADQTLKTRVVKKNCNPVWNEEMTVAIKDPNVPIRLTV 72

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109
              D D FT DD+M DA IDI+ Y++ +K+ +E
Sbjct:    73 FDWDKFTGDDKMGDANIDIQPYLEALKMGME 103

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2014015 EHB1 "AT1G70800" [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 1.4e-22, Sum P(2) = 1.4e-22
 Identities = 39/99 (39%), Positives = 59/99 (59%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +K+G++LA  D   SDP V + M  + +K   + NN NPEWNE    +   PN P+ L V
Sbjct:    21 VKRGIDLARRDALSSDPFVVITMGPQKLKSFTVKNNCNPEWNEELTLAIEDPNEPVKLMV 80

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDL 117
              D D+FT DD+M DA+ID++ ++   K+ L+     K+L
Sbjct:    81 YDKDTFTADDKMGDAQIDMKPFLDVHKLGLKELPHGKEL 119

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009637 "response to blue light" evidence=IMP

GO:0009638 "phototropism" evidence=IMP

TAIR|locus:2201497 AT1G66360 "AT1G66360" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 36/86 (41%), Positives = 53/86 (61%)

Query:    21 QGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCD 80
             +GVNLAI D   SDP V V M K+ ++ R +  N+N EWNE    S T P +P+ + V D
Sbjct:    14 RGVNLAIRDSQSSDPYVIVRMGKQKLRTRVMKKNLNTEWNEDLTLSVTDPTLPVKIMVYD 73

Query:    81 HDSFTKDDRMKDAKIDIREYMKDVKI 106
              D F++DD+M DA   I  +++ ++I
Sbjct:    74 RDRFSRDDKMGDAIFHIDPFLEAIRI 99

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2201190 AT1G23140 "AT1G23140" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
 Identities = 33/84 (39%), Positives = 49/84 (58%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +K+G+NL   D + SDP V V M  + +K R + N+ NPEW++        PN  + L V
Sbjct:    12 VKRGINLVSRDSNTSDPFVVVTMGSQKLKTRGVENSCNPEWDDELTLGINDPNQHVTLEV 71

Query:    79 CDHDSFTKDDRMKDAKIDIREYMK 102
              D D+FT  D M DA+IDI+ + +
Sbjct:    72 YDKDTFTSHDPMGDAEIDIKPFFE 95

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

TAIR|locus:2013905 AT1G70790 "AT1G70790" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 47/128 (36%), Positives = 70/128 (54%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             +K+G+NLAI D + SDP V + +A + +K R I NN NP WNE    S    N PI L+V
Sbjct:    13 VKRGINLAIRDATTSDPYVVITLANQKLKTRVINNNCNPVWNEQLTLSIKDVNDPIRLTV 72

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNL 138
              D D F+ DD+M DA+ID R +++  ++ L+ +       +K   I  G+        ++
Sbjct:    73 FDKDRFSGDDKMGDAEIDFRPFLEAHQMELDFQKLPNGCAIK--RIRPGRTNCLAEESSI 130

Query:   139 PGSKGFIM 146
               S G IM
Sbjct:   131 TWSNGKIM 138

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077367 AT3G07940 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
 Identities = 34/87 (39%), Positives = 52/87 (59%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             + +G NLA+ D   SDP V + + ++++K R I NN+NP WNE    S   P  P+ + V
Sbjct:   235 VVKGTNLAVRDVMTSDPYVILALGQQSVKTRVIKNNLNPVWNETLMLSIPEPMPPLKVLV 294

Query:    79 CDHDSFTKDDRMKDAKIDIREYMKDVK 105
              D D+F+ DD M +A+IDI+  +   K
Sbjct:   295 YDKDTFSTDDFMGEAEIDIQPLVSAAK 321

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

TAIR|locus:2115904 AGD13 "ARF-GAP domain 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 3.8e-15, Sum P(2) = 3.8e-15
 Identities = 32/80 (40%), Positives = 48/80 (60%)

Query:    19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSV 78
             IK+G NLAI D   SDP V + + K+ ++   + +N+NP WN+    S      P+ L V
Sbjct:   186 IKKGTNLAIRDMMSSDPYVVLNLGKQKLQTTVMNSNLNPVWNQELMLSVPESYGPVKLQV 245

Query:    79 CDHDSFTKDDRMKDAKIDIR 98
              D+D+F+ DD M +A IDI+
Sbjct:   246 YDYDTFSADDIMGEADIDIQ 265

GO:0005634 "nucleus" evidence=ISM

GO:0008060 "ARF GTPase activator activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032312 "regulation of ARF GTPase activity" evidence=IEA

GO:0009555 "pollen development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	159
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	7e-29
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	4e-15
pfam00168	85	pfam00168, C2, C2 domain	3e-12
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	3e-12
cd00030	102	cd00030, C2, C2 domain	2e-11
smart00239	101	smart00239, C2, Protein kinase C conserved region	1e-10
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	1e-07
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	3e-07
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	5e-07
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	3e-06
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	6e-06
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	1e-05
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	1e-05
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	2e-05
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	1e-04
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	2e-04
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	7e-04
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	8e-04
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	9e-04
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	0.001
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	0.002
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	0.003
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	0.003
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	0.004

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score =  103 bits (258), Expect = 7e-29
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 29/142 (20%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           L++R+ +G NLA+ D + SDP V + +  + +K R I  N+NP WNE    S   P  P+
Sbjct: 4   LKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPL 63

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIR-----------------------------EYMKDVK 105
            L V D D+F+KDD M +A+ID+                                  +  
Sbjct: 64  KLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDHLRDTPGGTQIKKVLPSVENCLASESH 123

Query: 106 INLEPRNAVKDLDLKLTNIECG 127
           I  +    V+DL LKL N+E G
Sbjct: 124 ITWKDGKIVQDLVLKLRNVESG 145

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 66.9 bits (164), Expect = 4e-15
 Identities = 38/110 (34%), Positives = 52/110 (47%), Gaps = 6/110 (5%)

Query: 14  SLRLRIKQGVNLAIHDHSG-SDPCV-FVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN 71
            L + +K+G NLA  D  G SDP V F    K   K + I  N+NP W+E F        
Sbjct: 1   QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVT 60

Query: 72  VPIMLSVCDHDSFTKDDRMKDAKID----IREYMKDVKINLEPRNAVKDL 117
            P+ + V D+D    DD M  A +D          +VK+ LE  N+ +DL
Sbjct: 61  QPLYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDL 110

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 5/81 (6%)

Query: 15 LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI---RFIGNNVNPEWNEVFPFSTTYP 70
          LR+ +    NL   D +G SDP V V +  +       + + N +NP WNE F F  T P
Sbjct: 1  LRVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLP 60

Query: 71 NVP-IMLSVCDHDSFTKDDRM 90
           +  + + V D+D F KDD +
Sbjct: 61 ELAELRIEVYDYDRFGKDDFI 81

Length = 85

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 59.7 bits (145), Expect = 3e-12
 Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 5/124 (4%)

Query: 15  LRLRIKQGVNLAIHDHSG---SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN 71
           LR+ + +  +LA  D SG   SDP   + +  +  K + I N +NP+WN    F      
Sbjct: 3   LRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQ 62

Query: 72  VPIMLSVC-DHDSFTKDDRMKDAKIDIREYMKDVKINLEPR-NAVKDLDLKLTNIECGKL 129
             ++  +  D D F   D + +  I + E   D K     +   +K      T++  G++
Sbjct: 63  NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122

Query: 130 QVQL 133
            +Q 
Sbjct: 123 HLQF 126

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 29/94 (30%), Positives = 47/94 (50%), Gaps = 3/94 (3%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDP-CVFVMMAKENIKIRFIGNNVNPEWNEVFPFS-TTYPN 71
           LR+ + +  NL   D +G SDP     +  K+  K + + N +NP WNE F F      +
Sbjct: 1   LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES 60

Query: 72  VPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVK 105
             + + V D D F+KDD + + +I + E +   K
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGK 94

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 5/94 (5%)

Query: 14  SLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI---RFIGNNVNPEWNEVFPFSTTY 69
           +L ++I    NL   D  G SDP V V +  +  +    + + N +NP WNE F F    
Sbjct: 1   TLTVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPP 60

Query: 70  PNV-PIMLSVCDHDSFTKDDRMKDAKIDIREYMK 102
           P +  + + V D D F +DD +    I + + + 
Sbjct: 61  PELAELEIEVYDKDRFGRDDFIGQVTIPLSDLLL 94

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 47.2 bits (113), Expect = 1e-07
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 4/86 (4%)

Query: 16 RLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIR--FIGNNVNPEWNEVFPFSTTYPNV 72
          R+ + +  NL   D +G SDP + + + K+ I  R  +I N +NP + ++F    T P  
Sbjct: 3  RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62

Query: 73 PIM-LSVCDHDSFTKDDRMKDAKIDI 97
           I+ +SV D+D    DD + +  ID+
Sbjct: 63 SILKISVMDYDLLGSDDLIGETVIDL 88

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 46.6 bits (111), Expect = 3e-07
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 14/87 (16%)

Query: 13 LSLRLRIKQGVNLAIHDHSG-SDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFS 66
           +L L+I + V L   D SG SDP V + +      K   K++    N+NP WNE F F 
Sbjct: 16 STLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVK--RKNLNPHWNETFLFE 73

Query: 67 TTYPNVPIM-----LSVCDHDSFTKDD 88
            +P   +      L V D+D F+++D
Sbjct: 74 -GFPYEKLQQRVLYLQVLDYDRFSRND 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 45.7 bits (109), Expect = 5e-07
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPNV 72
           LRL I++  +L   +  G  DP V V++      +   I N +NP W+EV     T PN 
Sbjct: 3   LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQ 62

Query: 73  PIMLSVCDHDSFTKDDRMKDAKIDIREYMK 102
            I L V D++   KD  +   +I++ + +K
Sbjct: 63  KITLEVMDYEKVGKDRSLGSVEINVSDLIK 92

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 43.5 bits (103), Expect = 3e-06
 Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 52 GNNVNPEWNEVFPFSTTYPNVP----IMLSVCDHDSFTKDDRMKDAKIDI 97
          G+  NPEWNE F F+  YP       ++L + D D+F+ DD + +A I +
Sbjct: 42 GDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSDDDFIGEATIHL 91

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 42.7 bits (101), Expect = 6e-06
 Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 18/127 (14%)

Query: 15  LRLRIKQGVNLAIHD-------HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFP-FS 66
           LR+ + +  +L   D          SDP V V +  +  K + I  N+NP+WNEV+    
Sbjct: 3   LRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVV 62

Query: 67  TTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIEC 126
              P   + + + D D   KDD +    ID+    K   I         D  L L +++ 
Sbjct: 63  DEVPGQELEIELFDEDP-DKDDFLGRLSIDLGSVEKKGFI---------DEWLPLEDVKS 112

Query: 127 GKLQVQL 133
           G+L ++L
Sbjct: 113 GRLHLKL 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 34  DPCVFVMMAKENIKIRFIGNNVNPEWNE-----VFPFSTTYPNVPIMLSVCDHDSFTKDD 88
           DP V +   +   +  +  + +NP +NE     V+P    +    I   V D D F+ +D
Sbjct: 27  DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNF---DIQFKVLDKDKFSFND 83

Query: 89  RMKDAKIDIREYM 101
            +    + ++E +
Sbjct: 84  YVATGSLSVQELL 96

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 37/113 (32%), Positives = 51/113 (45%), Gaps = 16/113 (14%)

Query: 13  LSLRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN 71
           +S+ +   QG  L   D +G SDP V V + K   + + I  N+NP WNE F F     +
Sbjct: 3   ISITVVCAQG--LIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSS 60

Query: 72  VPIMLSVCDHD---------SFTK--DDRMKDAKIDIREYM--KDVKINLEPR 111
             I + V D D          FT+  DD +    I++R      DV  NLE R
Sbjct: 61  DRIKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLSGEMDVWYNLEKR 113

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 19/103 (18%)

Query: 15  LRLRIKQGVNLAIHD--HSGSDPCVFVMMAKENIKIRF----IGNNVNPEWNEVFPFSTT 68
           L + I +  +L   D     SDP V    AK   K  +    I  ++NP W E    +  
Sbjct: 3   LVVTIHRATDLPKADFGTGSSDPYVTASFAKFG-KPLYSTRIIRKDLNPVWEE----TWF 57

Query: 69  YPNVPIM------LSVC--DHDSFTKDDRMKDAKIDIREYMKD 103
               P        LS    D D FT DDR+   +ID++E ++D
Sbjct: 58  VLVTPDEVKAGERLSCRLWDSDRFTADDRLGRVEIDLKELIED 100

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L + I Q  +L   D  G SDP V V +    K+  + +     +NP +NE F F   Y 
Sbjct: 18  LTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYS 77

Query: 71  ---NVPIMLSVCDHDSFTKDDRMKDAKIDI 97
              N  ++ SV D D F+K D + + ++ +
Sbjct: 78  ELGNKTLVFSVYDFDRFSKHDLIGEVRVPL 107

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 38.7 bits (91), Expect = 2e-04
 Identities = 34/116 (29%), Positives = 48/116 (41%), Gaps = 22/116 (18%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDP-CVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNV 72
           L + +    NL   D +G SDP   F +  ++  K + I   +NP WNE F        V
Sbjct: 1   LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVP-----V 55

Query: 73  P------IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT 122
           P      + + V D D   KDD +  A ID+ +        LEP     +L L L 
Sbjct: 56  PSRVRAVLKVEVYDWDRGGKDDLLGSAYIDLSD--------LEPEET-TELTLPLD 102

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 37.2 bits (87), Expect = 7e-04
 Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 21/125 (16%)

Query: 17  LRIKQGVNL-AIHDHSGSDPCVFVMMAKEN-----IKIRFIGNNVNPEWNEVFPFSTTYP 70
           +RI +  NL A   +  SDP  +V +   N      K R I + +NP W+E F       
Sbjct: 5   IRIVRAENLKADSSNGLSDP--YVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG 62

Query: 71  N-VPIMLSVCDHDSFTKDDRMKDA--KIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG 127
             + I  +V D     K D    A  K+D + +  D   +  PR    DLD +      G
Sbjct: 63  EPLWISATVWDRSFVGKHDLCGRASLKLDPKRF-GD---DGLPREIWLDLDTQ------G 112

Query: 128 KLQVQ 132
           +L ++
Sbjct: 113 RLLLR 117

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 37.3 bits (87), Expect = 8e-04
 Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 8/84 (9%)

Query: 15 LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKEN-------IKIRFIGNNVNPEWNEVFPFS 66
          LR+++  G++LA  D  G SDP V + +   +       ++ + I   +NP+WNE F F 
Sbjct: 2  LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFR 61

Query: 67 TTYPNVPIMLSVCDHDSFTKDDRM 90
                 ++  V D +  T+DD +
Sbjct: 62 VNPREHRLLFEVFDENRLTRDDFL 85

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 36.9 bits (86), Expect = 9e-04
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 4/42 (9%)

Query: 49 RFIGNNVNPEWNEVFPFSTTYPNVPIML--SVCDHDSFTKDD 88
          + I N++NP WNE F F      V  +L  +V D D    DD
Sbjct: 40 KTIKNSINPVWNETFEF-RIQSQVKNVLELTVMDEDYV-MDD 79

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 17/88 (19%)

Query: 14 SLRLRIKQGVNLAIHDHSG-SDPCVFVMM---------AKENIKIRFIGNNVNPEWNEVF 63
           L + I + VNLA  D +G SDP V + +          K  +K +     +NPE+NE F
Sbjct: 14 GLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKK----TLNPEFNEEF 69

Query: 64 PFSTTYPNVP---IMLSVCDHDSFTKDD 88
           +   + ++    + ++V D D    +D
Sbjct: 70 FYDIKHSDLAKKTLEITVWDKDIGKSND 97

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 36.1 bits (84), Expect = 0.002
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 12/95 (12%)

Query: 19  IKQGVNLAIHDHSG-SDPCVFVMM-------AKENIKIRFIGNNVNPEWNEVFPF--STT 68
           +++  NL   D +G SDP V + +        K+  K + I   +NP WNE F F     
Sbjct: 19  VREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQ--KTKTIKKTLNPVWNETFTFDLKPA 76

Query: 69  YPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
             +  + + V D D  T++D M      + E +K 
Sbjct: 77  DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM 111

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 19/89 (21%)

Query: 14 SLRLRIKQGVNLAIHDHSG-SDPCVFV-MMAK----ENIKIRFIGNNVNPEWNEVFPFST 67
           + + I +  NL   D +G SDP V V +M K    E  K       +NP +NE F F  
Sbjct: 16 RITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIF-- 73

Query: 68 TYPNVP--------IMLSVCDHDSFTKDD 88
             N+P        ++++V D D  +++D
Sbjct: 74 ---NIPLERLRETTLIITVMDKDRLSRND 99

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 35.6 bits (83), Expect = 0.003
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 24  NLAIHDHSG-SDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPF---STTYPNVPI 74
           NL   D  G SDP V V + +   K+           +NP +NE F F   +     V +
Sbjct: 25  NLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSL 84

Query: 75  MLSVCDHDSFTKDDRM 90
           +++V D DS  +++ +
Sbjct: 85  VITVVDKDSVGRNEVI 100

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 35.0 bits (81), Expect = 0.004
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 15 LRLRIKQGVNLAIHDHSG--SDPCVFVMMAKENIKIRFIGNNVNPEWN-EVFPFSTTYPN 71
          L++R+    +L + D S   +D  V V       K   +  ++NP WN E F F      
Sbjct: 1  LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEE 60

Query: 72 V---PIMLSVCDHDSFTKDD 88
          +   P+ + V DHD+++ +D
Sbjct: 61 LQDEPLQIRVMDHDTYSAND 80

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	159
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.94
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.94
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.92
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.91
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.91
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.9
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.9
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.89
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.89
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.89
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.89
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.89
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.89
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.88
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.88
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.88
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.87
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.87
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.87
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.87
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.86
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.86
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.86
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.86
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.86
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.85
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.85
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.85
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.85
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.85
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.84
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.84
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.84
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.84
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.84
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.83
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.83
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.83
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.83
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.83
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.82
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.82
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.82
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.82
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.82
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.81
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.81
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.81
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.81
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.81
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.8
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.8
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.8
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.8
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.8
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.8
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.79
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.79
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.79
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.79
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.79
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.79
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.79
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.78
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.78
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.77
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.77
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.77
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.77
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.76
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.76
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.75
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.74
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.74
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.74
PLN03008	868	Phospholipase D delta	99.74
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.74
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.74
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.74
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.73
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.72
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.72
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.72
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.71
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.71
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.71
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.71
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.7
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.7
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.7
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.7
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.7
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.7
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.68
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.65
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.63
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.61
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.5
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.48
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.47
PLN02270	808	phospholipase D alpha	99.42
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.4
PLN02223	537	phosphoinositide phospholipase C	99.35
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.35
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.32
PLN02952	599	phosphoinositide phospholipase C	99.25
PLN02222	581	phosphoinositide phospholipase C 2	99.21
PLN02230	598	phosphoinositide phospholipase C 4	99.2
KOG0169	746	consensus Phosphoinositide-specific phospholipase	99.19
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	99.18
PLN02228	567	Phosphoinositide phospholipase C	99.17
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.1
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	99.06
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.04
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.97
PLN02352	758	phospholipase D epsilon	98.87
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.84
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.82
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.64
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.62
PLN02964	644	phosphatidylserine decarboxylase	98.24
KOG3837	523	consensus Uncharacterized conserved protein, conta	98.19
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.14
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.98
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.95
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	97.91
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	97.89
PF15627	156	CEP76-C2: CEP76 C2 domain	97.83
KOG1327	529	consensus Copine [Signal transduction mechanisms]	97.64
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	97.57
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	97.17
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	97.06
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	96.84
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	96.73
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.69
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	96.64
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	96.57
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	96.49
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	96.47
KOG1452	442	consensus Predicted Rho GTPase-activating protein	96.18
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	95.84
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	95.34
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	94.56
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	94.11
PF11618	107	DUF3250: Protein of unknown function (DUF3250); In	93.64
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	93.42
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	93.31
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	92.76
PF15625	168	CC2D2AN-C2: CC2D2A N-terminal C2 domain	91.96
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	88.68
KOG0694	694	consensus Serine/threonine protein kinase [Signal	88.03
cd08696	179	C2_Dock-C C2 domains found in Dedicator Of CytoKin	86.54
PTZ00447	508	apical membrane antigen 1-like protein; Provisiona	85.76
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	85.37

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.94  E-value=1.4e-26  Score=155.64  Aligned_cols=135  Identities=40%  Similarity=0.723  Sum_probs=117.2

Q ss_pred             cccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCC
Q 044346            9 RTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKD   87 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d   87 (159)
                      ....|.|+|.|.+|.+|..+| .+.+||||.+.+++++.+|+++.+++||+|||.|.|.+..+...|+++|||+|.++.|
T Consensus         2 ~~~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    2 EMLVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKDPNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             CccceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecCCCceEEEEEEeCCCCCcc
Confidence            467899999999999999999 5999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccEEEEEeCccchhhcccC-CC-----------------------------CCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           88 DRMKDAKIDIREYMKDVKIN-LE-----------------------------PRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~~~~~~-~~-----------------------------~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      ||+|.+.|+|..++..+... +.                             .++..++..+.+++-.+|++.+++.|++
T Consensus        82 D~mG~A~I~l~p~~~~~~~~~l~~~~~~gt~~~~v~~s~dn~~~~es~i~~s~~~~~q~~~l~l~~ve~g~~e~~~~~~~  161 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQKMDYLKLELLTGTAIGKVLLSRDNCLNEESAIIRSFGKIVQDYILRLQNVECGELEIQLEWIK  161 (168)
T ss_pred             cccceeeeccHHHHHHhhhhccccccCCCcEeeEEEeccccccccceEEEecCChhhhhhccchhhcCcceeeeeeeEec
Confidence            99999999999887753332 01                             1444456666666778899999999998


Q ss_pred             CCCCCc
Q 044346          138 LPGSKG  143 (159)
Q Consensus       138 ~~~~~~  143 (159)
                      .++..+
T Consensus       162 ~~~~~~  167 (168)
T KOG1030|consen  162 LPGSVG  167 (168)
T ss_pred             Cccccc
Confidence            887654

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.94  E-value=2.5e-25  Score=145.74  Aligned_cols=115  Identities=19%  Similarity=0.247  Sum_probs=98.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      .|.|.|+|++|++++..+.+.+||||++.++..+++|++..+ +.||.|||+|.|.+......|.|+|||++.+++|++|
T Consensus         1 ~g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~~V~d~d~~~~dd~i   80 (121)
T cd04016           1 VGRLSITVVQAKLVKNYGLTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPEGVDSIYIEIFDERAFTMDERI   80 (121)
T ss_pred             CcEEEEEEEEccCCCcCCCCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecCCCcEEEEEEEeCCCCcCCceE
Confidence            378999999999887766789999999999999999999876 8999999999999986667899999999999999999


Q ss_pred             EEEEEeCcc-chhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEE
Q 044346           91 KDAKIDIRE-YMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRY  135 (159)
Q Consensus        91 G~~~i~l~~-l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~  135 (159)
                      |++.+++.. +..+...         +.|+.+..    ...|.|+|+++|
T Consensus        81 G~~~i~l~~~~~~g~~~---------~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          81 AWTHITIPESVFNGETL---------DDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             EEEEEECchhccCCCCc---------cccEeCcCccCCCCceEEEEEEeC
Confidence            999999964 4443222         66887754    567999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.92  E-value=9.4e-24  Score=141.33  Aligned_cols=130  Identities=24%  Similarity=0.373  Sum_probs=110.9

Q ss_pred             CcccccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEE
Q 044346            2 GVADKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVC   79 (159)
Q Consensus         2 ~~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~   79 (159)
                      +.|-.+.....|.|+|+|++|++|+..+ .+.+||||++.++...++|+++.++.||.|||.|.|.+... ...+.|+||
T Consensus         4 ~~~~~~~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~~~~~l~i~V~   83 (136)
T cd08375           4 YLARSQRASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDLEQDVLCITVF   83 (136)
T ss_pred             eeccccCCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCccCCEEEEEEE
Confidence            4566788889999999999999999998 89999999999999899999999999999999999998764 568999999


Q ss_pred             EccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY  135 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~  135 (159)
                      |++.+++|++||++.+++.++.....-  ..+.  ...|+.++...+|+|+|++.+
T Consensus        84 D~d~~~~d~~lG~~~i~l~~l~~~~~~--~~~~--~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          84 DRDFFSPDDFLGRTEIRVADILKETKE--SKGP--ITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             ECCCCCCCCeeEEEEEEHHHhcccccc--CCCc--EEEEeccccccceeEEEEEEe
Confidence            999999999999999999998763111  0011  145677777889999999876

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.91  E-value=2.1e-23  Score=138.10  Aligned_cols=113  Identities=18%  Similarity=0.291  Sum_probs=95.5

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC------CCCcEEEEEEEccCCCCC
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY------PNVPIMLSVCDHDSFTKD   87 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~------~~~~l~~~v~d~~~~~~d   87 (159)
                      ++|+|++|++|+.++ .+.+||||.+.++..+++|+++.++.||+|||.|.|.+..      ....|.|+|||++.+++|
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            479999999999998 8899999999999999999999999999999999999876      356899999999999899


Q ss_pred             CccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEE
Q 044346           88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLR  134 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~  134 (159)
                      ++||++.++|+++......       ..+.|+.+.+      ...|+|+|+++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~-------~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGR-------RRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCC-------cccEEEECcCCCCCCccccceEEEEeC
Confidence            9999999999997632111       1156877743      35699999874

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.91  E-value=8.1e-23  Score=134.36  Aligned_cols=114  Identities=28%  Similarity=0.402  Sum_probs=99.9

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      +|+|+|.+|++|+..+ .+.+||||++.++. ..++|+++.++.||.|||.|.|.+......+.|+|||++.+++|++||
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~D~d~~~~~~~iG   80 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQPLYIKVFDYDRGLTDDFMG   80 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecCCCCeEEEEEEeCCCCCCCcceE
Confidence            4899999999999999 88999999999985 677999999999999999999998766789999999999999999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRYC  136 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~~  136 (159)
                      .+.+++.++..+...         +.|+.+.+    ...|+|.|.++|.
T Consensus        81 ~~~~~l~~l~~~~~~---------~~~~~L~~~~~~~~~G~l~l~~~~~  120 (121)
T cd04042          81 SAFVDLSTLELNKPT---------EVKLKLEDPNSDEDLGYISLVVTLT  120 (121)
T ss_pred             EEEEEHHHcCCCCCe---------EEEEECCCCCCccCceEEEEEEEEC
Confidence            999999998764443         66777743    4579999999886

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.90  E-value=1.6e-22  Score=131.89  Aligned_cols=113  Identities=25%  Similarity=0.366  Sum_probs=100.0

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      .++|+|++|++|+..+ .+.+|||+.+++++...+|+++.++.||.|+|.|.|.+..+ ...|.|+|||++.++++++||
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~v~v~d~~~~~~~~~iG   80 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDDQSQILEIEVWDKDTGKKDEFIG   80 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCCCCCEEEEEEEECCCCCCCCeEE
Confidence            3789999999999998 88999999999998889999999999999999999998765 689999999999999999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      ++.++|+++..+...         +.|+.+.+. .|+|++.+.|.
T Consensus        81 ~~~~~l~~l~~~~~~---------~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          81 RCEIDLSALPREQTH---------SLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEeHHHCCCCCce---------EEEEEccCC-CcEEEEEEEec
Confidence            999999997654333         789888654 69999998874

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.90  E-value=1e-22  Score=133.20  Aligned_cols=113  Identities=21%  Similarity=0.292  Sum_probs=96.2

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~   89 (159)
                      |.|+|+|++|++|+..+ .+.+||||.+.++...++|+++.+ +.||.|||.|.|.+..+ ...|.|+|||++..+ |++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~-~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITEDKKPILKVAVFDDDKRK-PDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCC-Ccc
Confidence            67999999999999999 899999999999988889998764 78999999999998864 578999999999876 899


Q ss_pred             cEEEEEeCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEE
Q 044346           90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRY  135 (159)
Q Consensus        90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~  135 (159)
                      ||++.+++.++......         ..|+.+.  ....|+|+++++|
T Consensus        80 iG~~~~~l~~~~~~~~~---------~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEF---------DDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCC---------CCcEEeccCCcEeeEEEEEEEC
Confidence            99999999998764332         4466553  3568999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.89  E-value=3.9e-22  Score=131.99  Aligned_cols=115  Identities=17%  Similarity=0.238  Sum_probs=98.0

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEEC--CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA--KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD   92 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~   92 (159)
                      |.|+|++|++|+. ..+.+||||.+.++  ...++|+++.++.||.|+|.|.|.+......|.|+|||++..+++++||+
T Consensus         1 l~v~v~~A~~L~~-~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~~~~~lG~   79 (126)
T cd08678           1 LLVKNIKANGLSE-AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSPNSKELLFEVYDNGKKSDSKFLGL   79 (126)
T ss_pred             CEEEEEEecCCCC-CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCCCCCEEEEEEEECCCCCCCceEEE
Confidence            5799999999988 76789999999997  45689999999999999999999997667889999999999989999999


Q ss_pred             EEEeCccchhhcccCCCCCceeeeEEeecC------CCcccEEEEEEEEEeCC
Q 044346           93 AKIDIREYMKDVKINLEPRNAVKDLDLKLT------NIECGKLQVQLRYCNLP  139 (159)
Q Consensus        93 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~------~~~~G~l~l~l~~~~~~  139 (159)
                      +.+++.++......         ..|+.+.      ....|+|.+++.|.+++
T Consensus        80 ~~i~l~~l~~~~~~---------~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          80 AIVPFDELRKNPSG---------RQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEeHHHhccCCce---------eEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            99999998765433         3455553      24689999999998654

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.89  E-value=4.2e-22  Score=130.73  Aligned_cols=113  Identities=30%  Similarity=0.488  Sum_probs=99.6

Q ss_pred             eEEEEEEEEeeCCCCCC-C------CCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCC
Q 044346           13 LSLRLRIKQGVNLAIHD-H------SGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSF   84 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~------~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~   84 (159)
                      |.|+|+|.+|++|+..+ .      +.+||||.+.++...++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCCCCCEEEEEEEecCCC
Confidence            57999999999999876 2      579999999999999999999999999999999999875 367999999999988


Q ss_pred             CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346           85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY  135 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~  135 (159)
                       ++++||.+.+++.++..+...         +.|+.+.+...|+|+++++|
T Consensus        81 -~~~~iG~~~i~l~~l~~~~~~---------~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          81 -KDDFLGRLSIDLGSVEKKGFI---------DEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             -CCCcEEEEEEEHHHhcccCcc---------ceEEECcCCCCceEEEEEeC
Confidence             889999999999998754332         77999987789999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.89  E-value=3.8e-22  Score=131.48  Aligned_cols=92  Identities=18%  Similarity=0.322  Sum_probs=83.6

Q ss_pred             EEEEEEEeeC---CCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCC-----
Q 044346           15 LRLRIKQGVN---LAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFT-----   85 (159)
Q Consensus        15 L~v~v~~a~~---L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~-----   85 (159)
                      |.|+|++|++   |+.++ .+.+||||.+.++.++.+|+++.++.||+|||+|.|.+..+...|.|+|||++.++     
T Consensus         2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~~~~~l~v~V~d~d~~~~~~~~   81 (126)
T cd08379           2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYDPCTVLTVGVFDNSQSHWKEAV   81 (126)
T ss_pred             eEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecCCCCEEEEEEEECCCccccccC
Confidence            7899999999   78888 89999999999999999999999999999999999999877779999999998874     


Q ss_pred             -CCCccEEEEEeCccchhhccc
Q 044346           86 -KDDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        86 -~d~~lG~~~i~l~~l~~~~~~  106 (159)
                       +|++||++.+++.++..+...
T Consensus        82 ~~dd~lG~~~i~l~~l~~~~~~  103 (126)
T cd08379          82 QPDVLIGKVRIRLSTLEDDRVY  103 (126)
T ss_pred             CCCceEEEEEEEHHHccCCCEE
Confidence             899999999999997765443

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.89  E-value=5.8e-22  Score=130.61  Aligned_cols=120  Identities=23%  Similarity=0.303  Sum_probs=100.0

Q ss_pred             ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEECC--eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCC
Q 044346           12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMAK--ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKD   87 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~--~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d   87 (159)
                      .|.|+|+|.+|++|+..+  .+.+||||.+.+..  ..++|+++.++.+|.|+|.|.|.+......|.|+|||++..++|
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~~~~~l~~~v~d~~~~~~d   80 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTEPLNLTVYDFNDKRKD   80 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCCCCCEEEEEEEecCCCCCC
Confidence            478999999999999765  46789999999986  78899999999999999999999886588999999999999899


Q ss_pred             CccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      ++||.+.+++.++.........      ...+.......|+|+++++|.|
T Consensus        81 ~~iG~~~~~l~~l~~~~~~~~~------~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          81 KLIGTAEFDLSSLLQNPEQENL------TKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             ceeEEEEEEHHHhccCccccCc------chhhhcCCccceEEEEEEEeCC
Confidence            9999999999998875444110      1122234567899999999973

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.89  E-value=7e-22  Score=129.84  Aligned_cols=112  Identities=20%  Similarity=0.262  Sum_probs=95.0

Q ss_pred             EEEEEEEeeCCCCCC--CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346           15 LRLRIKQGVNLAIHD--HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        15 L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      |.|.|.+|++|+.++  .+.+||||.+.++.. ..+|+++.++.||.|||+|.|.+......|.|.+||++.++++++||
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~~~~~l~~~v~d~~~~~~~~~iG   81 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPRTFRHLSFYIYDRDVLRRDSVIG   81 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCCCCCEEEEEEEECCCCCCCceEE
Confidence            689999999999974  578999999999854 57999999999999999999999866689999999999999999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRY  135 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~  135 (159)
                      .+.++++++......         +.|+.+..     ...|+|++++++
T Consensus        82 ~~~i~l~~l~~~~~~---------~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          82 KVAIKKEDLHKYYGK---------DTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEHHHccCCCCc---------EeeEEEEccCCCCcccEEEEEEEEC
Confidence            999999997753322         66777643     347999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.89  E-value=1.1e-21  Score=132.42  Aligned_cols=96  Identities=39%  Similarity=0.713  Sum_probs=88.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      .|.|.|+|++|++|+..+.+.+||||.+.++.+.++|+++.++.||.|+|.|.|.+..+...+.|+|||++.+++|++||
T Consensus         1 ~G~L~V~Vi~a~nL~~~d~~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~~~~~l~~~V~D~d~~~~dd~iG   80 (145)
T cd04038           1 LGLLKVRVVRGTNLAVRDFTSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPNPMAPLKLEVFDKDTFSKDDSMG   80 (145)
T ss_pred             CeEEEEEEEeeECCCCCCCCCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecCCCCEEEEEEEECCCCCCCCEEE
Confidence            47899999999999987766899999999999999999999999999999999999888889999999999999999999


Q ss_pred             EEEEeCccchhhcccC
Q 044346           92 DAKIDIREYMKDVKIN  107 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~  107 (159)
                      ++.+++.++.....+.
T Consensus        81 ~a~i~l~~l~~~~~~~   96 (145)
T cd04038          81 EAEIDLEPLVEAAKLD   96 (145)
T ss_pred             EEEEEHHHhhhhhhhh
Confidence            9999999998765543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.88  E-value=1.1e-21  Score=128.57  Aligned_cols=111  Identities=25%  Similarity=0.389  Sum_probs=97.3

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~   89 (159)
                      |+|+|++|++|+..+ .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+... ...|.|+|||++.+ +|++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~~~~~l~v~v~d~d~~-~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQVKNVLELTVMDEDYV-MDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcccCCEEEEEEEECCCC-CCcc
Confidence            789999999999988 8899999999986   4567999999999999999999998754 45799999999998 8999


Q ss_pred             cEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346           90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY  135 (159)
Q Consensus        90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~  135 (159)
                      ||++.+++.++..+...         +.|+.+.+..+|+|++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~---------~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKV---------RVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcE---------EEEEECCCCCCceEEEEEEe
Confidence            99999999997764433         77888888889999999865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.88  E-value=1.7e-21  Score=129.07  Aligned_cols=117  Identities=26%  Similarity=0.409  Sum_probs=97.9

Q ss_pred             eEEEEEEEEeeCCCCCC---CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCCCCCC
Q 044346           13 LSLRLRIKQGVNLAIHD---HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~d~   88 (159)
                      |.|+|+|++|++|+..+   .+.+||||.+.++...++|+++.++.+|.|+|.|.|.+.. ....|.|+|||++..++++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~~~~~~l~i~v~d~~~~~~~~   80 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQNQLLKLILWDKDRFAGKD   80 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            67999999999999866   4689999999999889999999999999999999999886 4689999999999998999


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCC-------cccEEEEEEEE
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNI-------ECGKLQVQLRY  135 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~-------~~G~l~l~l~~  135 (159)
                      +||++.+++.++........      ...|+.+.+.       ..|+|+|+++|
T Consensus        81 ~lG~~~i~l~~~~~~~~~~~------~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          81 YLGEFDIALEEVFADGKTGQ------SDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             cceEEEEEHHHhhcccccCc------cceeEEccCcccCccccccceEEEEEEC
Confidence            99999999999874211111      1456666432       68999999876

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.88  E-value=9.5e-22  Score=130.31  Aligned_cols=115  Identities=16%  Similarity=0.245  Sum_probs=95.9

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccCCC-CC
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFT-KD   87 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~-~d   87 (159)
                      .|+|+|++|++|+..+ .+.+||||.+.+..+.++|+++.++.||.|||.|.|.+..+    ...|.|+|||++.++ ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            3899999999999998 88999999999998899999999999999999999998753    257999999999886 88


Q ss_pred             CccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEE
Q 044346           88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYC  136 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~  136 (159)
                      ++||++.++++++......        ...|+.+..     ..+|+|.|++.+-
T Consensus        81 ~~lG~v~i~l~~l~~~~~~--------~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEA--------VVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCc--------cceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            9999999999997631111        145666532     4789999998764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.87  E-value=4e-21  Score=130.49  Aligned_cols=117  Identities=22%  Similarity=0.296  Sum_probs=97.4

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      |.|+|.+|++|+..+ .+.+||||++.++.+.++|++..+ +.||.|||.|.|.+..+ ...+.|+|||++..++|++||
T Consensus         2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~V~d~~~~~~dd~lG   81 (150)
T cd04019           2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILSVEDRVGPNKDEPLG   81 (150)
T ss_pred             EEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecCccCCeEEEEEEEecCCCCCCeEE
Confidence            789999999999999 899999999999999999998876 69999999999998764 568999999999888899999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecCC-----------CcccEEEEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----------IECGKLQVQLRYC  136 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----------~~~G~l~l~l~~~  136 (159)
                      ++.++|+++......     ....+.|+.+.+           ...|+|+|.++|.
T Consensus        82 ~v~i~L~~l~~~~~~-----~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~  132 (150)
T cd04019          82 RAVIPLNDIERRVDD-----RPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLD  132 (150)
T ss_pred             EEEEEHHHCcccCCC-----CccCCceEECcCCCCcccccccCcccccEEEEEEec
Confidence            999999997653111     011256777643           2459999999885

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.4e-21  Score=149.84  Aligned_cols=134  Identities=28%  Similarity=0.363  Sum_probs=113.7

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      .....|.|+|++|++|+..+ .+.+||||++++.   +.+.+|++.++++||.|||+|.|.+...   ...|.++|||.|
T Consensus       164 ~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l~~~~L~l~V~~~d  243 (421)
T KOG1028|consen  164 FELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEELSNRVLHLSVYDFD  243 (421)
T ss_pred             ccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHhccCEEEEEEEecC
Confidence            44668999999999999999 8889999999998   4677999999999999999999996653   579999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      .|++++++|++.++|..+......         .+|.++..      ...|+|.+.++|+  +.+++| +.|++|+||.
T Consensus       244 rfsr~~~iGev~~~l~~~~~~~~~---------~~w~~l~~~~~~~~~~~gel~~sL~Y~--p~~g~ltv~v~kar~L~  311 (421)
T KOG1028|consen  244 RFSRHDFIGEVILPLGEVDLLSTT---------LFWKDLQPSSTDSEELAGELLLSLCYL--PTAGRLTVVVIKARNLK  311 (421)
T ss_pred             CcccccEEEEEEecCccccccccc---------eeeeccccccCCcccccceEEEEEEee--cCCCeEEEEEEEecCCC
Confidence            999999999999999886654322         44555421      2237999999999  778999 9999999995

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.87  E-value=7e-21  Score=124.65  Aligned_cols=112  Identities=20%  Similarity=0.297  Sum_probs=96.6

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccE
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      |.|.|+|++|++|+..+ .+.+||||.+++....++|+++.++.||.|+|+|.|.+......+.|+|||++..+++++||
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKDIHDVLEVTVYDEDKDKKPEFLG   80 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecCcCCEEEEEEEECCCCCCCceee
Confidence            67999999999999998 88999999999998888999999999999999999998765789999999999988999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRY  135 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~  135 (159)
                      ++.+++.++....           ..|+.+.     ....|+|.+++++
T Consensus        81 ~~~~~l~~~~~~~-----------~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          81 KVAIPLLSIKNGE-----------RKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             EEEEEHHHCCCCC-----------ceEEECcccCCCCceeeEEEEEEEe
Confidence            9999999875421           2355443     2468999999876

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.87  E-value=1.7e-20  Score=124.09  Aligned_cols=117  Identities=17%  Similarity=0.317  Sum_probs=97.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~   89 (159)
                      +...|+|+|++|++|+..+ .+.+||||.+.++...++|+++.++.+|.|+|.|.|.+......|.|+|||++.. +|++
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~i~V~d~~~~-~d~~   79 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKKPRSPIKIQVWNSNLL-CDEF   79 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecCCCCEEEEEEEECCCC-CCCc
Confidence            3578999999999999988 8899999999999999999999999999999999999887788999999999887 5899


Q ss_pred             cEEEEEeCccchhhcccCCCCCceeeeEEee-----cCCCcccEEEEEEEEEe
Q 044346           90 MKDAKIDIREYMKDVKINLEPRNAVKDLDLK-----LTNIECGKLQVQLRYCN  137 (159)
Q Consensus        90 lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-----l~~~~~G~l~l~l~~~~  137 (159)
                      ||.+.+++..+.....         ...++.     ..+...|.|.+++++.+
T Consensus        80 lG~~~~~l~~~~~~~~---------~~~~l~~~~~~~~~~~~G~i~~~~~~~~  123 (126)
T cd04046          80 LGQATLSADPNDSQTL---------RTLPLRKRGRDAAGEVPGTISVKVTSSD  123 (126)
T ss_pred             eEEEEEecccCCCcCc---------eEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence            9999999987532111         122321     23467899999998764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.86  E-value=8.1e-21  Score=126.72  Aligned_cols=120  Identities=24%  Similarity=0.418  Sum_probs=96.6

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCC
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-------NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFT   85 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~   85 (159)
                      .|+|+|++|++|+..+ .+.+||||++.+...       .++|+++.++.||.|||.|.|.+......|.|+|||++.++
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~l~~~v~d~~~~~   80 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNPREHRLLFEVFDENRLT   80 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcCCCCEEEEEEEECCCCC
Confidence            3789999999999998 889999999998743       56899999999999999999998766778999999999999


Q ss_pred             CCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEE
Q 044346           86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYC  136 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~  136 (159)
                      ++++||++.+++.++........   ......|+.++     ....|+|+++++|+
T Consensus        81 ~~~~iG~~~i~l~~l~~~~~~~~---~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          81 RDDFLGQVEVPLNNLPTETPGNE---RRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCeeEEEEEEHHHCCCcCcccc---ccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            99999999999999876422100   00013344443     24689999999874

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.86  E-value=1.2e-20  Score=124.01  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=94.3

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD   92 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~   92 (159)
                      |.|+|++|++|+.++ .+.+||||.+.++.. ..+|+++.++.||.|||.|.|.+......|.|++||++.+++|++||+
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~~~~~l~v~v~d~~~~~~d~~iG~   81 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPPGFHTVSFYVLDEDTLSRDDVIGK   81 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            789999999999999 889999999999754 469999999999999999999987666899999999999999999999


Q ss_pred             EEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEE
Q 044346           93 AKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLR  134 (159)
Q Consensus        93 ~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~  134 (159)
                      +.++++++.....        ..+.|+.+.+     ...|+|+++++
T Consensus        82 ~~~~~~~~~~~~~--------~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          82 VSLTREVISAHPR--------GIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEcHHHhccCCC--------CCCcEEECeeeCCCCccccEEEEEEE
Confidence            9999888654211        1156777754     34899988875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.86  E-value=3.5e-20  Score=122.63  Aligned_cols=113  Identities=19%  Similarity=0.384  Sum_probs=92.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCC-CcEEEEEEEccCCCCCCcc
Q 044346           13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~~d~~l   90 (159)
                      ..|+|.|++|++|+..  +.+||||.+.++.. ..+|++ .++.||.|||.|.|.+.++. ..+.|.+||++.+++|++|
T Consensus         4 ~~L~V~Vi~A~~L~~~--~~~DPYv~v~l~~~~~~kT~v-~~~~nP~WnE~f~f~~~~~~~~~l~v~v~d~~~~~~d~~i   80 (126)
T cd08400           4 RSLQLNVLEAHKLPVK--HVPHPYCVISLNEVKVARTKV-REGPNPVWSEEFVFDDLPPDVNSFTISLSNKAKRSKDSEI   80 (126)
T ss_pred             eEEEEEEEEeeCCCCC--CCCCeeEEEEECCEeEEEeec-CCCCCCccCCEEEEecCCCCcCEEEEEEEECCCCCCCCeE
Confidence            4699999999999885  46899999999854 457776 46899999999999866553 5789999999999999999


Q ss_pred             EEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEe
Q 044346           91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCN  137 (159)
Q Consensus        91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~  137 (159)
                      |.+.++|.++......         +.|+.+.+      ...|+|+|+++|.+
T Consensus        81 G~v~i~l~~l~~~~~~---------~~W~~L~~~~~~~~~~~G~i~l~l~~~~  124 (126)
T cd08400          81 AEVTVQLSKLQNGQET---------DEWYPLSSASPLKGGEWGSLRIRARYSH  124 (126)
T ss_pred             EEEEEEHhHccCCCcc---------cEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence            9999999987653332         56777643      45699999999984

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.86  E-value=1.4e-20  Score=123.93  Aligned_cols=111  Identities=24%  Similarity=0.403  Sum_probs=93.4

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      .|+|++++|++|+..+ .+.+||||.++++....+|+++.++.||.|+|+|.|.+... ...|.|+|||++.++++++||
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEGADSPLSVEVWDWDLVSKNDFLG   80 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCCCCCEEEEEEEECCCCCCCcEeE
Confidence            3899999999999998 78899999999998889999999999999999999998765 568999999999999999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecC---------CCcccEEEEEE
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT---------NIECGKLQVQL  133 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---------~~~~G~l~l~l  133 (159)
                      ++.+++.++......         ..|+.+.         +...|.|++.+
T Consensus        81 ~~~~~l~~l~~~~~~---------~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          81 KVVFSIQTLQQAKQE---------EGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEHHHcccCCCC---------CCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999997653222         3355442         24568888776

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.86  E-value=3.4e-20  Score=127.08  Aligned_cols=117  Identities=24%  Similarity=0.301  Sum_probs=97.1

Q ss_pred             ccceEEEEEEEEeeCCCCCC-------------------------------CCCCCcEEEEEECCeE-EEeecccCCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-------------------------------HSGSDPCVFVMMAKEN-IKIRFIGNNVNP   57 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-------------------------------~~~~dpy~~v~~~~~~-~~t~~~~~~~~P   57 (159)
                      -..|.|.|+|.+|++|+.++                               .+.+||||++.+++.. .+|+++.++.||
T Consensus         4 llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP   83 (158)
T cd04015           4 LLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENP   83 (158)
T ss_pred             EEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCC
Confidence            35689999999999999865                               3457999999998654 599999999999


Q ss_pred             ccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEE
Q 044346           58 EWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQV  131 (159)
Q Consensus        58 ~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l  131 (159)
                      .|||+|.|.+......|.|.|||++.++ +++||.+.++++++..+...         +.|+++.+      ...|+|+|
T Consensus        84 ~WnE~F~~~~~~~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~---------~~w~~L~~~~~~~~~~~~~l~v  153 (158)
T cd04015          84 VWNESFHIYCAHYASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPV---------EGWLPILDSNGKPPKPGAKIRV  153 (158)
T ss_pred             ccceEEEEEccCCCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCc---------ceEEECcCCCCCCCCCCCEEEE
Confidence            9999999998777788999999999885 58999999999998764333         67877743      34589999


Q ss_pred             EEEEE
Q 044346          132 QLRYC  136 (159)
Q Consensus       132 ~l~~~  136 (159)
                      +++|.
T Consensus       154 ~~~f~  158 (158)
T cd04015         154 SLQFT  158 (158)
T ss_pred             EEEEC
Confidence            99883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.85  E-value=5.6e-20  Score=123.02  Aligned_cols=118  Identities=19%  Similarity=0.237  Sum_probs=95.3

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC----------CCcEEEEEEEcc
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP----------NVPIMLSVCDHD   82 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~----------~~~l~~~v~d~~   82 (159)
                      .|+|+|.+|++|+.++ .+.+||||++.++...++|+++.++.||.|||.|.|.+...          ...+.|+|||++
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            6899999999999999 89999999999998899999999999999999999974321          246899999999


Q ss_pred             CCCCCCccEEEEE-eCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEEEe
Q 044346           83 SFTKDDRMKDAKI-DIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRYCN  137 (159)
Q Consensus        83 ~~~~d~~lG~~~i-~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~~~  137 (159)
                      ..++|++||++.+ ++..+....      +......|+.+.  ....|+|.+++++++
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~------~~~~~~~W~~L~~~~~~~Geil~~~~~~~  133 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEE------DFPPKLQWFPIYKGGQSAGELLAAFELIE  133 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCC------CCCCCceEEEeecCCCchhheeEEeEEEE
Confidence            9999999999987 443333211      111226787764  367899999999985

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.85  E-value=5.7e-20  Score=122.52  Aligned_cols=115  Identities=23%  Similarity=0.284  Sum_probs=97.1

Q ss_pred             ceEEEEEEEEeeCCCCCC-C----------CCCCcEEEEEECCeE-EEeecccCCCCCccccEEEEEeeCCCCcEEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIHD-H----------SGSDPCVFVMMAKEN-IKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVC   79 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~----------~~~dpy~~v~~~~~~-~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~   79 (159)
                      .|.|+|+|.+|++|+..+ .          +.+||||++.++... .+|+++.++.+|.|||+|.|.+. ....+.|.||
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~-~~~~l~~~v~   81 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVH-NGRNLELTVF   81 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcC-CCCEEEEEEE
Confidence            578999999999999877 3          478999999998654 58888889999999999999997 5678999999


Q ss_pred             EccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      |++.+++++++|.+.++|+++......       ..+.|+.+.  +.|+|+++++|.
T Consensus        82 d~~~~~~~~~iG~~~i~l~~l~~~~~~-------~~~~w~~L~--~~G~l~l~~~~~  129 (132)
T cd04014          82 HDAAIGPDDFVANCTISFEDLIQRGSG-------SFDLWVDLE--PQGKLHVKIELK  129 (132)
T ss_pred             eCCCCCCCceEEEEEEEhHHhcccCCC-------cccEEEEcc--CCcEEEEEEEEe
Confidence            999888899999999999997763000       126788885  689999999886

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.85  E-value=2.7e-20  Score=119.91  Aligned_cols=93  Identities=20%  Similarity=0.332  Sum_probs=82.6

Q ss_pred             eEEEEEEEEeeCCCCCC-C----CCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccCCC
Q 044346           13 LSLRLRIKQGVNLAIHD-H----SGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDSFT   85 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~----~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~~   85 (159)
                      |.|.|+|++|++|+..+ .    +.+|||+.++++...++|+++.++.||+|||.|.|.+...  ...|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            68999999999999875 2    3489999999998889999999999999999999998654  347999999999999


Q ss_pred             CCCccEEEEEeCccchhhcc
Q 044346           86 KDDRMKDAKIDIREYMKDVK  105 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~~~  105 (159)
                      +|++||++.++|+++.....
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCC
Confidence            99999999999999887533

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.85  E-value=1.8e-20  Score=121.39  Aligned_cols=90  Identities=11%  Similarity=0.253  Sum_probs=79.0

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      ...+.|+|+|++|++|+ . .+.+||||++++..    .+.+|++.++|+||.|||+|.|.+...   +..|.|+|||+|
T Consensus        11 ~~~~~L~V~vikA~~L~-~-~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~~tL~~~V~d~D   88 (118)
T cd08677          11 KQKAELHVNILEAENIS-V-DAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLDGTLTLTLRCCD   88 (118)
T ss_pred             CcCCEEEEEEEEecCCC-C-CCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCCcEEEEEEEeCC
Confidence            45688999999999999 3 35589999999862    577899999999999999999998763   468999999999


Q ss_pred             CCCCCCccEEEEEeCccch
Q 044346           83 SFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~  101 (159)
                      .++++++||++.++++++.
T Consensus        89 rfs~~d~IG~v~l~l~~~~  107 (118)
T cd08677          89 RFSRHSTLGELRLKLADVS  107 (118)
T ss_pred             CCCCCceEEEEEEcccccc
Confidence            9999999999999999853

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.85  E-value=4.1e-20  Score=120.83  Aligned_cols=100  Identities=18%  Similarity=0.191  Sum_probs=84.2

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346           14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD   82 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~   82 (159)
                      .|+|.|++|++|+..+.|.+||||++++.       .++++|+++.++.||+|||.|.|.+...    ...|.|.|||++
T Consensus         1 kL~V~Vi~A~~L~~~d~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~d   80 (120)
T cd08395           1 KVTVKVVAANDLKWQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDYC   80 (120)
T ss_pred             CEEEEEEECcCCCcccCCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEec
Confidence            38999999999988777889999999972       2356899999999999999999998753    246999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      ..+++++||++.+++.++..++..         ..|+.+.
T Consensus        81 ~~~~dd~IG~~~l~l~~~~~~~~~---------~~w~~L~  111 (120)
T cd08395          81 FARDDRLVGVTVLQLRDIAQAGSC---------ACWLPLG  111 (120)
T ss_pred             ccCCCCEEEEEEEEHHHCcCCCcE---------EEEEECc
Confidence            888899999999999998765443         6677764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.84  E-value=1.3e-19  Score=119.96  Aligned_cols=114  Identities=17%  Similarity=0.272  Sum_probs=95.5

Q ss_pred             EEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCCCCCccEEEEE
Q 044346           19 IKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFTKDDRMKDAKI   95 (159)
Q Consensus        19 v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~~lG~~~i   95 (159)
                      |++|++|+. ..+.+||||++++....++|+++.++.+|.|+|.|.|.+...   ...+.|+|||++..+++++||++.+
T Consensus         2 vi~a~~L~~-~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~~   80 (127)
T cd08373           2 VVSLKNLPG-LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSATV   80 (127)
T ss_pred             eEEeeCCcc-cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEEE
Confidence            678999988 667899999999998889999999999999999999998653   5789999999999989999999999


Q ss_pred             eCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEEEeCCCCC
Q 044346           96 DIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRYCNLPGSK  142 (159)
Q Consensus        96 ~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~~~~~~~~  142 (159)
                      +++++..+...         ..|+.+.+    ...|+|+++++|.++.+..
T Consensus        81 ~l~~l~~~~~~---------~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~  122 (127)
T cd08373          81 SLQDLVSEGLL---------EVTEPLLDSNGRPTGATISLEVSYQPPDGAV  122 (127)
T ss_pred             EhhHcccCCce---------EEEEeCcCCCCCcccEEEEEEEEEeCCCCcc
Confidence            99998865443         55665532    3469999999999765443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.84  E-value=6.8e-20  Score=123.48  Aligned_cols=103  Identities=17%  Similarity=0.124  Sum_probs=87.0

Q ss_pred             ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEE-EccC
Q 044346           12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVC-DHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~~   83 (159)
                      .+.|.|+|++|++|+..+  .+.+||||++++.  .   .+.+|+++++++||+|||+|.|.+...+..|.|+|| |++.
T Consensus        28 ~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l~~~~L~v~V~~d~~~  107 (146)
T cd04028          28 KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSPTGKTLQVIVWGDYGR  107 (146)
T ss_pred             CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcCCCCEEEEEEEeCCCC
Confidence            578999999999999864  6789999999995  2   377999999999999999999999866789999999 5788


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ++++++||++.++|+++......         ..|+.|.+
T Consensus       108 ~~~~~~iG~~~i~L~~l~~~~~~---------~~Wy~L~~  138 (146)
T cd04028         108 MDKKVFMGVAQILLDDLDLSNLV---------IGWYKLFP  138 (146)
T ss_pred             CCCCceEEEEEEEcccccCCCCc---------eeEEecCC
Confidence            88899999999999997543332         56777754

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.84  E-value=5.2e-20  Score=121.12  Aligned_cols=92  Identities=21%  Similarity=0.299  Sum_probs=81.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEEcc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCDHD   82 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~   82 (159)
                      .+.|.|.|++|++|+.++.+.+||||++++.     ..+++|+++.++.||.|||+|.|.+.+    ....|.|+|||++
T Consensus        12 ~~~L~V~Vi~A~~L~~~~~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~l~~~~L~~~V~d~d   91 (122)
T cd08381          12 NGTLFVMVMHAKNLPLLDGSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVEDLQQRVLQVSVWSHD   91 (122)
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHHhCCCEEEEEEEeCC
Confidence            5789999999999998887789999999996     346799999999999999999999732    2568999999999


Q ss_pred             CCCCCCccEEEEEeCccchhh
Q 044346           83 SFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      .++++++||++.++|.++...
T Consensus        92 ~~~~~~~lG~~~i~l~~l~~~  112 (122)
T cd08381          92 SLVENEFLGGVCIPLKKLDLS  112 (122)
T ss_pred             CCcCCcEEEEEEEeccccccC
Confidence            999999999999999997753

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.84  E-value=1.1e-19  Score=119.44  Aligned_cols=113  Identities=27%  Similarity=0.374  Sum_probs=93.6

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEE
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDA   93 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~   93 (159)
                      |.|+|++|++|+.+   .+||||.+.++....+|+++.++.||.|||+|.|.+... ...|.|+|||++.. ++++||++
T Consensus         2 L~V~Vi~a~~L~~~---~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~~~~~L~~~v~d~d~~-~~~~lG~~   77 (121)
T cd08378           2 LYVRVVKARGLPAN---SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRLQGSTLEVSVWDKDKA-KDDFLGGV   77 (121)
T ss_pred             EEEEEEEecCCCcc---cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCCcCCEEEEEEEeCCCC-cCceeeeE
Confidence            78999999999886   789999999998889999999999999999999998763 67899999999987 78999999


Q ss_pred             EEeCccchhhcccCCCCCceeeeEEeecCC----CcccEEEEEEEE
Q 044346           94 KIDIREYMKDVKINLEPRNAVKDLDLKLTN----IECGKLQVQLRY  135 (159)
Q Consensus        94 ~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~----~~~G~l~l~l~~  135 (159)
                      .++++++......   ++ ...+.|+.+..    ..+|+|+|++.|
T Consensus        78 ~i~l~~l~~~~~~---~~-~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          78 CFDLSEVPTRVPP---DS-PLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             EEEhHhCcCCCCC---CC-CCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999997653211   01 11256777744    457999999876

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.84  E-value=3.4e-19  Score=117.81  Aligned_cols=115  Identities=23%  Similarity=0.281  Sum_probs=96.2

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCC
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK---ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~   88 (159)
                      .|+|+|++|++|+..+ .+.+||||.+....   ...+|+++.++.+|.|||.|.|.+... ...|.|+|||++..++++
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~~~~~L~i~v~d~d~~~~~~   81 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAGEPLWISATVWDRSFVGKHD   81 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCCCCCEEEEEEEECCCCCCCc
Confidence            5899999999999998 88999999998763   467999999999999999999998864 578999999999988999


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      +||++.++|+++.....     + ...+.|+.+.  +.|+|++++.+.
T Consensus        82 ~iG~~~i~l~~~~~~~~-----~-~~~~~w~~l~--~~g~i~l~~~~~  121 (126)
T cd04043          82 LCGRASLKLDPKRFGDD-----G-LPREIWLDLD--TQGRLLLRVSME  121 (126)
T ss_pred             eEEEEEEecCHHHcCCC-----C-CCceEEEEcC--CCCeEEEEEEEe
Confidence            99999999987543210     1 1226788885  489999999885

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.83  E-value=1.5e-19  Score=119.80  Aligned_cols=109  Identities=26%  Similarity=0.424  Sum_probs=91.1

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC--------
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF--------   84 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~--------   84 (159)
                      .|+|+|++|++|+..+ .+.+||||.+.++....+|+++.++.+|.|+|.|.|.+..+...|.|+|||++..        
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~~~~~l~i~v~d~d~~~~~~~~~~   81 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIKVRVWDEDDDIKSRLKQK   81 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecCCCCEEEEEEEECCCCccccccee
Confidence            6899999999999999 8899999999998888899999999999999999999876677899999998853        


Q ss_pred             ---CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEE
Q 044346           85 ---TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQL  133 (159)
Q Consensus        85 ---~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l  133 (159)
                         +.+++||++.+++.++...  .         +.|+.+..     ..+|+|.+++
T Consensus        82 ~~~~~~~~iG~~~i~l~~~~~~--~---------~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          82 FTRESDDFLGQTIIEVRTLSGE--M---------DVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             ccccCCCcceEEEEEhHHccCC--C---------CeEEECccCCCCCcEeEEEEEEC
Confidence               4689999999999885321  1         45666532     4678888764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.83  E-value=1.6e-19  Score=119.29  Aligned_cols=97  Identities=25%  Similarity=0.344  Sum_probs=83.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~   79 (159)
                      ...+.|.|+|++|++|+..+  .+.+||||++++.     ..+++|++++++.||.|||+|.|.+...   +..|.|+||
T Consensus        12 ~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l~~~~L~~~V~   91 (125)
T cd04029          12 YKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQLETRTLQLSVW   91 (125)
T ss_pred             CCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHhCCCEEEEEEE
Confidence            45678999999999999876  4789999999985     2357899999999999999999998753   568999999


Q ss_pred             EccCCCCCCccEEEEEeCccchhhccc
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~~~~  106 (159)
                      |++.++++++||++.++|.++......
T Consensus        92 d~~~~~~~~~lG~~~i~l~~~~~~~~~  118 (125)
T cd04029          92 HYDRFGRNTFLGEVEIPLDSWNFDSQH  118 (125)
T ss_pred             ECCCCCCCcEEEEEEEeCCcccccCCc
Confidence            999999999999999999997664433

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.83  E-value=1.6e-19  Score=119.14  Aligned_cols=104  Identities=22%  Similarity=0.339  Sum_probs=89.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      +..+.|.|+|++|++|+..+ .+.+||||++++.   ...++|+++.++.+|.|+|.|.|.+...   ...|.|+|||++
T Consensus        13 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~i~V~d~~   92 (124)
T cd08387          13 KDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPKRTLEVLLYDFD   92 (124)
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCCCEEEEEEEECC
Confidence            34678999999999999999 8899999999984   4567999999999999999999997753   468999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      .++++++||++.++++++..++..         +.|+.+.
T Consensus        93 ~~~~~~~iG~~~i~l~~~~~~~~~---------~~W~~l~  123 (124)
T cd08387          93 QFSRDECIGVVELPLAEVDLSEKL---------DLWRKIQ  123 (124)
T ss_pred             CCCCCceeEEEEEecccccCCCCc---------ceEEECc
Confidence            999999999999999998764433         6687663

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.83  E-value=1.2e-19  Score=117.54  Aligned_cols=91  Identities=31%  Similarity=0.464  Sum_probs=81.5

Q ss_pred             eEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccC
Q 044346           13 LSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDS   83 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~   83 (159)
                      |.|+|+|++|++|+..+ . +.+||||++++.   ...++|+++.++.||.|+|.|.|.+...    ...|.|+|||++.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            68999999999999998 6 899999999985   3567999999999999999999987653    4689999999999


Q ss_pred             CCCCCccEEEEEeCccchhh
Q 044346           84 FTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~  103 (159)
                      +++|++||++.+++.++...
T Consensus        81 ~~~dd~lG~~~i~l~~l~~~  100 (111)
T cd04041          81 FTADDRLGRVEIDLKELIED  100 (111)
T ss_pred             CCCCCcceEEEEEHHHHhcC
Confidence            99999999999999998753

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.83  E-value=2.3e-19  Score=115.08  Aligned_cols=100  Identities=22%  Similarity=0.364  Sum_probs=86.5

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      .|.|+|.+|++|+..+ .+.+||||++.++++.++|+++.++.+|.|||.|.|.+..+ ...|.|+|||++.   +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~v~v~d~~~---~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNPENQELEIEVKDDKT---GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCCCCCEEEEEEEECCC---CCccE
Confidence            3889999999999988 88999999999999999999999999999999999999875 5689999999886   78999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ++.++|.++......       ..+.|+.+.+
T Consensus        78 ~~~i~l~~l~~~~~~-------~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDL-------TLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccc-------eeeeeEecCC
Confidence            999999998764311       1267887743

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.82  E-value=2.5e-19  Score=118.13  Aligned_cols=103  Identities=26%  Similarity=0.381  Sum_probs=87.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        14 ~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~V~d~d~   93 (124)
T cd08385          14 QSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNKTLVFSVYDFDR   93 (124)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            4578999999999999998 8899999999985   3567999999999999999999998653   4689999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      ++++++||++.++++++..+...         +.|+++.
T Consensus        94 ~~~~~~lG~~~i~l~~~~~~~~~---------~~W~~l~  123 (124)
T cd08385          94 FSKHDLIGEVRVPLLTVDLGHVT---------EEWRDLE  123 (124)
T ss_pred             CCCCceeEEEEEecCcccCCCCc---------ceEEEcc
Confidence            99999999999999997553333         5677653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.82  E-value=1.4e-18  Score=118.06  Aligned_cols=121  Identities=20%  Similarity=0.269  Sum_probs=95.5

Q ss_pred             EEEEEEEeeC--CCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---------CCcEEEE
Q 044346           15 LRLRIKQGVN--LAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---------NVPIMLS   77 (159)
Q Consensus        15 L~v~v~~a~~--L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---------~~~l~~~   77 (159)
                      ..++|..+.+  ++... .+..|||+++++.     ..+.+|+++++|+||+|||.|.|.+...         ...|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            4556666666  56666 7789999999872     5688999999999999999999998654         3479999


Q ss_pred             EEEccCC-CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEEEEEEEeCCCCCce
Q 044346           78 VCDHDSF-TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQVQLRYCNLPGSKGF  144 (159)
Q Consensus        78 v~d~~~~-~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l~l~~~~~~~~~~l  144 (159)
                      |||++.+ ++|++||++.++|+.+..+...         ..|+++   +....|+|+++++..++.....+
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~---------~~~~~L~~~~k~~Gg~l~v~ir~r~p~~~~~~  145 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEI---------HESVDLMDGRKATGGKLEVKVRLREPLTGKQL  145 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcc---------eEEEEhhhCCCCcCCEEEEEEEecCCCcccee
Confidence            9999987 5799999999999998765444         335554   33667999999999887655554

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.82  E-value=3.8e-19  Score=117.20  Aligned_cols=88  Identities=20%  Similarity=0.326  Sum_probs=80.1

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCC--CCcc
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTK--DDRM   90 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~--d~~l   90 (159)
                      |+|+|++|++|+..+ .+.+||||+++++ ...++|+++.++.||.|+|.|.|.+.. ...|.|+|||++.+++  |++|
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~-~~~l~i~V~d~~~~~~~~d~~l   80 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP-SSIITIQVFDQKKFKKKDQGFL   80 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC-CCEEEEEEEECCCCCCCCCceE
Confidence            789999999999999 8999999999996 678899999999999999999999974 7899999999998875  5799


Q ss_pred             EEEEEeCccchhh
Q 044346           91 KDAKIDIREYMKD  103 (159)
Q Consensus        91 G~~~i~l~~l~~~  103 (159)
                      |++.+++.++...
T Consensus        81 G~~~i~l~~l~~~   93 (123)
T cd08382          81 GCVRIRANAVLPL   93 (123)
T ss_pred             eEEEEEHHHcccc
Confidence            9999999998753

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.82  E-value=1.4e-19  Score=119.61  Aligned_cols=93  Identities=23%  Similarity=0.338  Sum_probs=81.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+.++ . +.+|||+++++.     ..+++|+++.++.||.|||.|.|.+...   ...|.|+|||
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l~~~~L~~~V~d   92 (125)
T cd08393          13 KLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREELPTRVLNLSVWH   92 (125)
T ss_pred             CCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHhCCCEEEEEEEe
Confidence            3568999999999999998 5 799999999985     2457999999999999999999998642   4689999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      ++.++++++||++.++|.++...
T Consensus        93 ~~~~~~~~~iG~~~i~L~~~~~~  115 (125)
T cd08393          93 RDSLGRNSFLGEVEVDLGSWDWS  115 (125)
T ss_pred             CCCCCCCcEeEEEEEecCccccC
Confidence            99999999999999999997543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.82  E-value=3.4e-19  Score=118.08  Aligned_cols=92  Identities=21%  Similarity=0.260  Sum_probs=81.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|.|++|++|+.++ . +.+||||++++.     ..+.+|+++.++.||+|||+|.|.+...   ...|.+.|||
T Consensus        13 ~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l~~~~L~v~V~~   92 (128)
T cd08392          13 RTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLLSSRQLQVSVWH   92 (128)
T ss_pred             CCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHhCCcEEEEEEEe
Confidence            3578999999999999988 5 899999999986     2366999999999999999999998653   4699999999


Q ss_pred             ccCCCCCCccEEEEEeCccchh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      ++.++++++||++.++|.++..
T Consensus        93 ~~~~~~~~~lG~~~i~L~~~~~  114 (128)
T cd08392          93 SRTLKRRVFLGEVLIPLADWDF  114 (128)
T ss_pred             CCCCcCcceEEEEEEEcCCccc
Confidence            9999999999999999999643

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.81  E-value=3.8e-19  Score=115.01  Aligned_cols=88  Identities=25%  Similarity=0.495  Sum_probs=80.7

Q ss_pred             EEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCcc-ccEEEEEeeCC---CCcEEEEEEEccCCCCCC
Q 044346           15 LRLRIKQGVNLAIHD--HSGSDPCVFVMMAKENIKIRFIGNNVNPEW-NEVFPFSTTYP---NVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        15 L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w-~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~   88 (159)
                      |.|+|++|++|+.++  .+.+||||+++++...++|+++.++.||.| +|.|.|.+...   +..|.|+|||++.+++++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            579999999999887  578999999999999999999999999999 99999998763   468999999999999999


Q ss_pred             ccEEEEEeCccchh
Q 044346           89 RMKDAKIDIREYMK  102 (159)
Q Consensus        89 ~lG~~~i~l~~l~~  102 (159)
                      +||++.+++.++..
T Consensus        81 ~iG~~~~~l~~l~~   94 (110)
T cd08688          81 AIGKVYIDLNPLLL   94 (110)
T ss_pred             ceEEEEEeHHHhcc
Confidence            99999999999876

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.81  E-value=4.6e-19  Score=119.98  Aligned_cols=89  Identities=18%  Similarity=0.304  Sum_probs=77.5

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeC----------------CCC
Q 044346           14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTY----------------PNV   72 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~----------------~~~   72 (159)
                      .|.|+|++|++|+. ..+.+||||++++..     ..++|+++.++.||.|||.|.|.+..                ...
T Consensus         1 kL~V~Vi~ArnL~~-~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~~   79 (148)
T cd04010           1 KLSVRVIECSDLAL-KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEKL   79 (148)
T ss_pred             CEEEEEEeCcCCCC-CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccEE
Confidence            38899999999988 557899999999974     56789999999999999999999851                124


Q ss_pred             cEEEEEEEccCCCCCCccEEEEEeCccchhh
Q 044346           73 PIMLSVCDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        73 ~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      .|.|.|||++.+++|+|||++.+++..+...
T Consensus        80 ~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~  110 (148)
T cd04010          80 ELRVDLWHASMGGGDVFLGEVRIPLRGLDLQ  110 (148)
T ss_pred             EEEEEEEcCCCCCCCceeEEEEEeccccccc
Confidence            7899999999988999999999999997764

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.81  E-value=1.3e-18  Score=114.21  Aligned_cols=91  Identities=30%  Similarity=0.442  Sum_probs=83.4

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      |.|+|+|++|++|+..+ .+.+||||++.+.. ..++|.++.++.+|.|+|.|.|.+..+...|.|+|||++.+++|++|
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~~~~~L~v~v~d~~~~~~d~~I   80 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTSPNQKITLEVMDYEKVGKDRSL   80 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecCCCCEEEEEEEECCCCCCCCee
Confidence            67999999999999998 89999999999974 56788888899999999999999887778999999999999999999


Q ss_pred             EEEEEeCccchhh
Q 044346           91 KDAKIDIREYMKD  103 (159)
Q Consensus        91 G~~~i~l~~l~~~  103 (159)
                      |++.+++.++..+
T Consensus        81 G~~~~~l~~l~~~   93 (120)
T cd04045          81 GSVEINVSDLIKK   93 (120)
T ss_pred             eEEEEeHHHhhCC
Confidence            9999999998764

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.81  E-value=1.4e-18  Score=114.65  Aligned_cols=94  Identities=27%  Similarity=0.487  Sum_probs=84.1

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccC-CCCCccccEEEEEeeCC----CCcEEEEEEEccCCCC
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGN-NVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFTK   86 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~-~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~   86 (159)
                      |.|.|+|++|++|+..+ .+.+||||++.+....++|++..+ +.+|.|||.|.|.+..+    ...|.|+|||++.+++
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            67999999999999988 889999999999988888888875 89999999999998876    4689999999999989


Q ss_pred             CCccEEEEEeCccchhhccc
Q 044346           87 DDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        87 d~~lG~~~i~l~~l~~~~~~  106 (159)
                      +++||++.+++.++..++..
T Consensus        81 d~~iG~~~i~l~~l~~~~~~  100 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVE  100 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCC
Confidence            99999999999998864433

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.81  E-value=1.2e-18  Score=115.62  Aligned_cols=92  Identities=22%  Similarity=0.388  Sum_probs=79.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEE-eeC---CCCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFS-TTY---PNVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~   81 (159)
                      ..+.|+|+|++|++|+..+ . +.+||||++.+.   ..+.+|+++.++.||.|||.|.|. +..   ....|.|+|||+
T Consensus        14 ~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~~~~L~~~V~d~   93 (128)
T cd08388          14 EKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQDLSLHFAVLSF   93 (128)
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhCCCEEEEEEEEc
Confidence            3568999999999999988 5 889999999885   456799999999999999999994 442   235799999999


Q ss_pred             cCCCCCCccEEEEEeCccchh
Q 044346           82 DSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +.++++++||++.++|.++..
T Consensus        94 d~~~~d~~lG~~~i~L~~l~~  114 (128)
T cd08388          94 DRYSRDDVIGEVVCPLAGADL  114 (128)
T ss_pred             CCCCCCceeEEEEEeccccCC
Confidence            999999999999999999644

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.80  E-value=7.6e-19  Score=115.98  Aligned_cols=114  Identities=15%  Similarity=0.244  Sum_probs=92.5

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeeccc-CCCCCccccEEEEEeeCC-----CCcEEEEEEEccCCC
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIG-NNVNPEWNEVFPFSTTYP-----NVPIMLSVCDHDSFT   85 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~-~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~   85 (159)
                      .|+|+|++|++|+..+ .+.+||||.+.++. ..++|++.. ++.+|.|||.|.|.+..+     ...|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            3789999999999988 88999999999986 788898875 589999999999998876     579999999999988


Q ss_pred             CCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEE
Q 044346           86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQV  131 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l  131 (159)
                      ++++||++.+++.++.......-.    ....|+.+   ....+|.|++
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~----~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGE----LRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCc----ceeEEEEeECCCCCcCeEEeC
Confidence            999999999999998875432100    11345544   3467787764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.80  E-value=6e-19  Score=115.52  Aligned_cols=93  Identities=13%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+.++.+.+||||++++.     ..+.+|++..++.||.|||.|.|.+...  ...+.|+||+++.
T Consensus        10 ~~~~L~V~Vi~ar~L~~~~~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~~~l~v~V~~~~~   89 (119)
T cd08685          10 QNRKLTLHVLEAKGLRSTNSGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQKRLLVTVWNKLS   89 (119)
T ss_pred             cCCEEEEEEEEEECCCCCCCCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhCCEEEEEEECCCC
Confidence            45789999999999998887789999999986     2366899999999999999999998653  3578899999988


Q ss_pred             CC-CCCccEEEEEeCccchhh
Q 044346           84 FT-KDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        84 ~~-~d~~lG~~~i~l~~l~~~  103 (159)
                      .+ ++++||.+.+++.++..+
T Consensus        90 ~~~~~~~lG~~~i~l~~~~~~  110 (119)
T cd08685          90 KSRDSGLLGCMSFGVKSIVNQ  110 (119)
T ss_pred             CcCCCEEEEEEEecHHHhccC
Confidence            75 478999999999998754

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.80  E-value=8.3e-19  Score=120.63  Aligned_cols=96  Identities=24%  Similarity=0.385  Sum_probs=83.8

Q ss_pred             CcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEE
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLS   77 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~   77 (159)
                      .....+.|.|+|++|++|+..+ .+.+||||++++.     ...++|+++.++.||.|||.|.|.+...    +..|.|+
T Consensus        22 ~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE~f~f~~~~~~~l~~~~L~i~  101 (162)
T cd04020          22 KKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNHTFVYDGVSPEDLSQACLELT  101 (162)
T ss_pred             cCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCCEEEEecCCHHHhCCCEEEEE
Confidence            4557899999999999999999 8899999999874     4578999999999999999999985422    3579999


Q ss_pred             EEEccCCCCCCccEEEEEeCccchhh
Q 044346           78 VCDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        78 v~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      |||++.++++++||++.+++.++...
T Consensus       102 V~d~d~~~~d~~lG~v~i~l~~~~~~  127 (162)
T cd04020         102 VWDHDKLSSNDFLGGVRLGLGTGKSY  127 (162)
T ss_pred             EEeCCCCCCCceEEEEEEeCCccccC
Confidence            99999999999999999999997653

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.80  E-value=9.3e-19  Score=115.52  Aligned_cols=92  Identities=24%  Similarity=0.345  Sum_probs=81.8

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC--CCCcEEEEEEEccCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--PNVPIMLSVCDHDSFTK   86 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~~   86 (159)
                      ...+.|+|+|.+|++|+. + .+.+|||+++.++...++|+++.++.||.|||+|.|....  ....|.|+|||++.+++
T Consensus        25 ~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s~  103 (127)
T cd04032          25 RGLATLTVTVLRATGLWG-DYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGWD  103 (127)
T ss_pred             CCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCCC
Confidence            456899999999999985 5 7889999999999889999999999999999999997432  36799999999999999


Q ss_pred             CCccEEEEEeCccchh
Q 044346           87 DDRMKDAKIDIREYMK  102 (159)
Q Consensus        87 d~~lG~~~i~l~~l~~  102 (159)
                      |++||++.++|+....
T Consensus       104 dd~IG~~~i~l~~~~~  119 (127)
T cd04032         104 DDLLGTCSVVPEAGVH  119 (127)
T ss_pred             CCeeEEEEEEecCCce
Confidence            9999999999997553

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.80  E-value=8.9e-19  Score=115.31  Aligned_cols=93  Identities=18%  Similarity=0.274  Sum_probs=82.5

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~   79 (159)
                      ...+.|.|.|++|+||+..+ .+.+||||++++-  .    .+++|++.+++.||+|||.|.|.+...   +..|.|+||
T Consensus        11 ~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~~~~L~~~V~   90 (124)
T cd08680          11 SGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLYQKTLQVDVC   90 (124)
T ss_pred             CCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhhcCEEEEEEE
Confidence            34578999999999999988 8899999999976  1    367999999999999999999998763   579999999


Q ss_pred             EccCCCCCCccEEEEEeCccchh
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +++.++++++||++.++|+++..
T Consensus        91 ~~~~~~~~~~lG~~~i~L~~~~~  113 (124)
T cd08680          91 SVGPDQQEECLGGAQISLADFES  113 (124)
T ss_pred             eCCCCCceeEEEEEEEEhhhccC
Confidence            99999999999999999999744

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=3.4e-18  Score=111.87  Aligned_cols=87  Identities=11%  Similarity=0.140  Sum_probs=77.1

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346           13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD   92 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~   92 (159)
                      +.|.|+|++|++|+.++  ..||||.+.++..+.+|++..+ .||.|||.|.|.+......|.|+|||++.+ .|+++|+
T Consensus         2 ~~L~V~Vv~Ar~L~~~~--~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~~~~~L~v~V~dkd~~-~DD~lG~   77 (127)
T cd08394           2 SLLCVLVKKAKLDGAPD--KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINRLDLGLVIELWNKGLI-WDTLVGT   77 (127)
T ss_pred             ceEEEEEEEeeCCCCCC--CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcCCCCEEEEEEEeCCCc-CCCceEE
Confidence            47999999999997755  4589999999998889998877 499999999999987777799999999976 8999999


Q ss_pred             EEEeCccchhh
Q 044346           93 AKIDIREYMKD  103 (159)
Q Consensus        93 ~~i~l~~l~~~  103 (159)
                      +.++|+++...
T Consensus        78 v~i~L~~v~~~   88 (127)
T cd08394          78 VWIPLSTIRQS   88 (127)
T ss_pred             EEEEhHHcccC
Confidence            99999997764

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.79  E-value=2.2e-18  Score=113.68  Aligned_cols=89  Identities=24%  Similarity=0.381  Sum_probs=79.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|+++.++.+|.|+|.|.|.+..    ....|.|+|||
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~l~~~V~d   93 (125)
T cd04031          14 VTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETLKERTLEVTVWD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHhCCCEEEEEEEe
Confidence            4578999999999999998 88999999999863     56789999999999999999998543    24689999999


Q ss_pred             ccCCCCCCccEEEEEeCcc
Q 044346           81 HDSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~   99 (159)
                      ++.++++++||++.++|.+
T Consensus        94 ~~~~~~~~~iG~~~i~l~~  112 (125)
T cd04031          94 YDRDGENDFLGEVVIDLAD  112 (125)
T ss_pred             CCCCCCCcEeeEEEEeccc
Confidence            9999899999999999998

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.79  E-value=9.8e-18  Score=110.75  Aligned_cols=115  Identities=26%  Similarity=0.435  Sum_probs=91.5

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      ..|.|++.+|+ |...+ .+.+||||.+.++.. ..+|+++.++.+|.|+|.|.|.+. ....|.|+|||++..+.+++|
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~-~~~~l~~~V~d~~~~~~~~~i   79 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVT-PQSTLEFKVWSHHTLKADVLL   79 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeC-CCCEEEEEEEeCCCCCCCcEE
Confidence            46899999998 55555 788999999999866 789999999999999999999986 567899999999999999999


Q ss_pred             EEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEE
Q 044346           91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQL  133 (159)
Q Consensus        91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l  133 (159)
                      |++.++|.++..........    ...|+.+..      ...|+|.+.+
T Consensus        80 G~~~i~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          80 GEASLDLSDILKNHNGKLEN----VKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEHHHhHhhcCCCccc----eEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999988764443320    123444422      3468887765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.79  E-value=2.3e-18  Score=116.80  Aligned_cols=89  Identities=28%  Similarity=0.415  Sum_probs=80.3

Q ss_pred             EEEEEEEeeCCCCCC-CC--------------CCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEE
Q 044346           15 LRLRIKQGVNLAIHD-HS--------------GSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLS   77 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~--------------~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~   77 (159)
                      |.|+|.+|++|+.++ .+              .+||||++.++..+.+|+++.++.||+|||+|.|.+..+  ...+.|+
T Consensus         2 ~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~~   81 (151)
T cd04018           2 FIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKIQ   81 (151)
T ss_pred             eEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEEE
Confidence            789999999999988 43              689999999998889999999999999999999996543  5789999


Q ss_pred             EEEccCCCCCCccEEEEEeCccchhh
Q 044346           78 VCDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        78 v~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      |||++..++|++||.+.+++.++..+
T Consensus        82 v~D~d~~~~dd~iG~~~l~l~~l~~~  107 (151)
T cd04018          82 IRDWDRVGNDDVIGTHFIDLSKISNS  107 (151)
T ss_pred             EEECCCCCCCCEEEEEEEeHHHhccC
Confidence            99999999999999999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.79  E-value=4.3e-18  Score=112.37  Aligned_cols=94  Identities=27%  Similarity=0.440  Sum_probs=81.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD   82 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~   82 (159)
                      ..+.|.|+|.+|++|+..+ .+.+||||.+.+.   ....+|+++.++.+|.|||.|.|.....    ...|.|+|||++
T Consensus        14 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~~~l~~~v~d~d   93 (125)
T cd08386          14 QESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQRVLYLQVLDYD   93 (125)
T ss_pred             CCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCCCEEEEEEEeCC
Confidence            4568999999999999998 8889999999983   5577999999999999999999974322    357999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhc
Q 044346           83 SFTKDDRMKDAKIDIREYMKDV  104 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~  104 (159)
                      .++++++||++.+++.++....
T Consensus        94 ~~~~~~~iG~~~i~l~~l~~~~  115 (125)
T cd08386          94 RFSRNDPIGEVSLPLNKVDLTE  115 (125)
T ss_pred             CCcCCcEeeEEEEecccccCCC
Confidence            9999999999999999976543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.79  E-value=2.8e-18  Score=113.52  Aligned_cols=93  Identities=20%  Similarity=0.300  Sum_probs=81.8

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|+|+|++|++|+..+ .+.+||||++.+.     ...++|+++.++.||.|||.|.|.+...   ...|.+.|||+
T Consensus        14 ~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l~~~~l~i~v~~~   93 (127)
T cd04030          14 QRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEELKRRTLDVAVKNS   93 (127)
T ss_pred             CCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHhcCCEEEEEEEEC
Confidence            3578999999999999999 8899999999985     4578999999999999999999998653   46899999999


Q ss_pred             cCC--CCCCccEEEEEeCccchhh
Q 044346           82 DSF--TKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        82 ~~~--~~d~~lG~~~i~l~~l~~~  103 (159)
                      +.+  +++++||++.++|.++...
T Consensus        94 ~~~~~~~~~~iG~~~i~l~~l~~~  117 (127)
T cd04030          94 KSFLSREKKLLGQVLIDLSDLDLS  117 (127)
T ss_pred             CcccCCCCceEEEEEEeccccccc
Confidence            875  6889999999999997553

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.79  E-value=3.4e-18  Score=112.76  Aligned_cols=103  Identities=17%  Similarity=0.265  Sum_probs=85.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEE-eeC---CCCcEEEEEEEc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFS-TTY---PNVPIMLSVCDH   81 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~d~   81 (159)
                      ...+.|.|+|++|++|+..+ .+.+|||+++.+.   ..+.+|++.++ .||+|||+|.|. +..   .+..|.|+|||+
T Consensus        13 ~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~~~L~~~V~~~   91 (124)
T cd08389          13 PSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNNMALRFRLYGV   91 (124)
T ss_pred             CCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhccCEEEEEEEEC
Confidence            34568999999999999998 8889999998764   45778888877 999999999998 554   256899999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      +.++++++||++.++|+++..+...         ..|+.+.
T Consensus        92 ~~~~~~~~lG~~~i~L~~l~~~~~~---------~~w~~L~  123 (124)
T cd08389          92 ERMRKERLIGEKVVPLSQLNLEGET---------TVWLTLE  123 (124)
T ss_pred             CCcccCceEEEEEEeccccCCCCCc---------eEEEeCC
Confidence            9999999999999999997553322         6677664

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.79  E-value=3.7e-18  Score=110.53  Aligned_cols=102  Identities=23%  Similarity=0.230  Sum_probs=85.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEEEEEccCCCC
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLSVCDHDSFTK   86 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~d~~~~~~   86 (159)
                      ...|+|+|.+|++|+   .+.+||||++.+++++++|+++.++.+|.|+|.|.|.+..+     +..|.|+|||++.+++
T Consensus         3 ~~~l~V~v~~a~~L~---~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~~   79 (111)
T cd04011           3 DFQVRVRVIEARQLV---GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLRS   79 (111)
T ss_pred             cEEEEEEEEEcccCC---CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCccccc
Confidence            467999999999998   46799999999999999999999999999999999997543     3579999999999989


Q ss_pred             CCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           87 DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        87 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      +++||++.++|+++.......+      ...|+.+.
T Consensus        80 ~~~iG~~~i~l~~v~~~~~~~~------~~~w~~L~  109 (111)
T cd04011          80 DTLIGSFKLDVGTVYDQPDHAF------LRKWLLLT  109 (111)
T ss_pred             CCccEEEEECCccccCCCCCcc------eEEEEEee
Confidence            9999999999999865422211      15676654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.78  E-value=7.2e-18  Score=109.70  Aligned_cols=99  Identities=28%  Similarity=0.413  Sum_probs=84.6

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccE
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      |+|.|++|++|+..+ .+.+||||++.+. ...++|+++.++.+|.|+|.|.|.+... ...+.|+|||++..+++++||
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~~~~~l~~~v~d~~~~~~~~~iG   80 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSRVRAVLKVEVYDWDRGGKDDLLG   80 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccCCCCEEEEEEEeCCCCCCCCceE
Confidence            578999999999988 8889999999997 4557999999999999999999998763 678999999999998999999


Q ss_pred             EEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           92 DAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        92 ~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      ++.+++.++..+...         +.|+.+.
T Consensus        81 ~~~~~l~~l~~~~~~---------~~~~~L~  102 (115)
T cd04040          81 SAYIDLSDLEPEETT---------ELTLPLD  102 (115)
T ss_pred             EEEEEHHHcCCCCcE---------EEEEECc
Confidence            999999997653222         5666664

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.78  E-value=6.6e-18  Score=109.34  Aligned_cols=99  Identities=14%  Similarity=0.200  Sum_probs=84.6

Q ss_pred             CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccC
Q 044346           30 HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKIN  107 (159)
Q Consensus        30 ~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~  107 (159)
                      +|.+||||.+.++. ...+|+++.++.||.|||.|.|.+... ...|.|.|||++.+ ++++||++.++|.++...... 
T Consensus        10 ~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~-~d~~iG~~~v~L~~l~~~~~~-   87 (111)
T cd04052          10 TGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDRRKSRVTVVVKDDRDR-HDPVLGSVSISLNDLIDATSV-   87 (111)
T ss_pred             CCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCcCCCEEEEEEEECCCC-CCCeEEEEEecHHHHHhhhhc-
Confidence            67899999999985 457889988999999999999998765 57899999999999 899999999999998653222 


Q ss_pred             CCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346          108 LEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus       108 ~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                             .+.|+.+.+.+.|+|+++++|.|
T Consensus        88 -------~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 -------GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             -------cceeEECCCCCCCEEEEEEEEec
Confidence                   16788887778999999999984

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.77  E-value=1.5e-17  Score=111.21  Aligned_cols=112  Identities=22%  Similarity=0.359  Sum_probs=88.5

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C-----------eEEEeecccCCCCCcc-ccEEEEEeeCCCCcEEEEE
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K-----------ENIKIRFIGNNVNPEW-NEVFPFSTTYPNVPIMLSV   78 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~-----------~~~~t~~~~~~~~P~w-~e~~~~~~~~~~~~l~~~v   78 (159)
                      .+.|.+++|++|+ ++ .+.+|||+++.+.  .           +.++|.++.++.||.| ||.|.|.+. .++.|.|+|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~-~~~~L~v~V   79 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGL-PTDVLEIEV   79 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcC-CCCEEEEEE
Confidence            4678999999998 67 8999999999985  1           3689999999999999 999999986 467899999


Q ss_pred             EEccCCCC---CCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEE
Q 044346           79 CDHDSFTK---DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQL  133 (159)
Q Consensus        79 ~d~~~~~~---d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l  133 (159)
                      ||++..++   +++||++.+++.++.........      ..|+.++     ....|+|.+++
T Consensus        80 ~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~------~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          80 KDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQ------ELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EecCCCCCccCCceEEEEEEEHHHhcccccCCce------EEEEECCcCCCCCcEEEEEEEEe
Confidence            99765443   79999999999998775433221      4455543     25678888765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.77  E-value=8e-18  Score=110.74  Aligned_cols=104  Identities=18%  Similarity=0.245  Sum_probs=87.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ...+.|.|+|++|++|+..+  .+.+||||++++.   ....+|+++.++.+|.|+|.|.|.+...   ...|.|+|||+
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~~~l~i~v~d~   90 (123)
T cd08390          11 LEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQRRTLRLSVYDV   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcccEEEEEEEEC
Confidence            34678999999999999886  6789999999984   4567899999999999999999998753   45899999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      +..+++++||++.++|+++......         +.|++|.
T Consensus        91 ~~~~~~~~iG~~~i~L~~l~~~~~~---------~~w~~L~  122 (123)
T cd08390          91 DRFSRHCIIGHVLFPLKDLDLVKGG---------VVWRDLE  122 (123)
T ss_pred             CcCCCCcEEEEEEEeccceecCCCc---------eEEEeCC
Confidence            9988899999999999997764433         5677663

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.77  E-value=7.8e-18  Score=110.77  Aligned_cols=94  Identities=28%  Similarity=0.386  Sum_probs=81.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~   79 (159)
                      ...+.|.|+|++|++|+..+  .+.+||||++++.     ....+|+++.++.+|.|||+|.|.+...   ...|.|+||
T Consensus        11 ~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l~~~~l~i~v~   90 (123)
T cd08521          11 YKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQLETRTLQLSVW   90 (123)
T ss_pred             CCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHhCCCEEEEEEE
Confidence            34678999999999999877  5789999999874     2467899999999999999999997753   468999999


Q ss_pred             EccCCCCCCccEEEEEeCccchhh
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      |++.++++++||++.++|.++..+
T Consensus        91 d~~~~~~~~~iG~~~i~l~~l~~~  114 (123)
T cd08521          91 HHDRFGRNTFLGEVEIPLDSWDLD  114 (123)
T ss_pred             eCCCCcCCceeeEEEEeccccccc
Confidence            999999999999999999997543

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.77  E-value=4.8e-18  Score=113.39  Aligned_cols=92  Identities=25%  Similarity=0.286  Sum_probs=81.8

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLS   77 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~   77 (159)
                      ....|+|+|++|++|+..+ .+.+||||++++.       ...++|+++.++.||.|||.|.|.+...     ...+.|+
T Consensus        14 ~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~~~~~~~~l~~~   93 (133)
T cd04009          14 SEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPEQCSVEGALLLFT   93 (133)
T ss_pred             CCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechhhcccCCCEEEEE
Confidence            3567999999999999988 8899999999985       3467999999999999999999998752     4589999


Q ss_pred             EEEccCCCCCCccEEEEEeCccchh
Q 044346           78 VCDHDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        78 v~d~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      |||++.++++++||++.++|+++..
T Consensus        94 V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          94 VKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             EEecCCCCCCcEeEEEEEeHHHCCc
Confidence            9999999889999999999999775

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.76  E-value=1.7e-17  Score=109.51  Aligned_cols=89  Identities=27%  Similarity=0.452  Sum_probs=79.0

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE--EEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKEN--IKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~--~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~   89 (159)
                      .|+|.|++|++|+..+ .+.+||||++.++...  .+|.++.++.+|.|||.|.|.+..+ ...|.|+|||++.+++|++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~~~~~~L~~~V~d~d~~~~dd~   80 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGNSILKISVMDYDLLGSDDL   80 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecCCCCCEEEEEEEECCCCCCCce
Confidence            3789999999999999 8899999999998544  4777888999999999999997654 5689999999999999999


Q ss_pred             cEEEEEeCccchh
Q 044346           90 MKDAKIDIREYMK  102 (159)
Q Consensus        90 lG~~~i~l~~l~~  102 (159)
                      ||++.+++++...
T Consensus        81 iG~~~i~l~~~~~   93 (124)
T cd04037          81 IGETVIDLEDRFF   93 (124)
T ss_pred             eEEEEEeeccccc
Confidence            9999999998764

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.76  E-value=1.3e-17  Score=110.94  Aligned_cols=107  Identities=29%  Similarity=0.405  Sum_probs=92.1

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccCC
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDSF   84 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~~   84 (159)
                      +.|+|+|++|++|+..+ .+.+||||.+.+.     ...++|+++.++.+|.|+|+|.|.+...  ...|.|+|||++..
T Consensus        13 ~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          13 NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcCCEEEEEEEECCCC
Confidence            78999999999999988 8889999999986     3578999999999999999999998754  46899999999998


Q ss_pred             CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEE
Q 044346           85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKL  129 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l  129 (159)
                      +++++||++.+++.++... ..         +.|+++.+...|+.
T Consensus        93 ~~~~~iG~~~~~l~~l~~~-~~---------~~w~~L~~~~~~~~  127 (131)
T cd04026          93 TRNDFMGSLSFGVSELIKM-PV---------DGWYKLLNQEEGEY  127 (131)
T ss_pred             CCcceeEEEEEeHHHhCcC-cc---------CceEECcCcccccc
Confidence            8999999999999998753 11         66888877777754

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.76  E-value=1.4e-17  Score=113.15  Aligned_cols=90  Identities=23%  Similarity=0.391  Sum_probs=79.4

Q ss_pred             CcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----------------------------eEEEeecccCCCCC
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----------------------------ENIKIRFIGNNVNP   57 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----------------------------~~~~t~~~~~~~~P   57 (159)
                      ...+.+.|.|+|++|++|+.++ .+.+||||.+.+..                             ..++|.++.++.+|
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            3567889999999999999999 89999999998852                             23688889999999


Q ss_pred             ccccEEEEEeeCC-CCcEEEEEEEccCCCCCCccEEEEEeCccch
Q 044346           58 EWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        58 ~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~  101 (159)
                      .|||.|.|.+... ...|.|+|||++    +++||++.++++++.
T Consensus       103 ~WnE~F~f~v~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~  143 (153)
T cd08676         103 VWNETFRFEVEDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP  143 (153)
T ss_pred             ccccEEEEEeccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC
Confidence            9999999998754 578999999987    789999999999977

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.75  E-value=5.8e-18  Score=148.54  Aligned_cols=122  Identities=18%  Similarity=0.330  Sum_probs=105.0

Q ss_pred             cccCcccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEc
Q 044346            5 DKGRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDH   81 (159)
Q Consensus         5 ~~~~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~   81 (159)
                      |.-+....|.|.|+|++|++|. .+.+.+||||.+.++ +.+.+|++++++.||+|||.|.|.+..+  +..++|+|||+
T Consensus      1972 ~~~~~~~~G~L~V~V~~a~nl~-~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1972 ESLLQCLPGSLTVTIKRGNNLK-QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred             HHHHhhCCcceEEEEeeccccc-cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEec
Confidence            4456677899999999999998 337899999999999 4478999999999999999999887765  47899999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC--CcccE---EEEEEEEEe
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN--IECGK---LQVQLRYCN  137 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~--~~~G~---l~l~l~~~~  137 (159)
                      +.|++ +.+|++.+++.++..++.+         +.|+++.+  ...|.   |++.++|.+
T Consensus      2051 d~f~k-d~~G~~~i~l~~vv~~~~~---------~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2051 NTFGK-SSLGKVTIQIDRVVMEGTY---------SGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CccCC-CCCceEEEEHHHHhcCcee---------eeeeecCcccccCCCcceEEEEEEecC
Confidence            99955 5999999999999987776         66777765  67888   999999973

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.74  E-value=2e-17  Score=110.66  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=77.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-C--CCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H--SGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC   79 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~--~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~   79 (159)
                      ..+.|.|.|++|+||+.++ .  +.+||||++++..     .+.+|++.+++.||+|||.|.|.+...   +..|.|+||
T Consensus        13 ~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~L~~~~L~~~V~   92 (138)
T cd08407          13 AANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSELLAASSVELEVL   92 (138)
T ss_pred             CCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHHhCccEEEEEEE
Confidence            4578999999999999987 3  4589999999872     356899999999999999999998763   568999999


Q ss_pred             EccCCCCCCccEEEEEeCcc
Q 044346           80 DHDSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~   99 (159)
                      |++.++++++||++.+.+..
T Consensus        93 d~d~~~~~d~iG~v~lg~~~  112 (138)
T cd08407          93 NQDSPGQSLPLGRCSLGLHT  112 (138)
T ss_pred             eCCCCcCcceeceEEecCcC
Confidence            99999999999999999865

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.74  E-value=2.1e-17  Score=110.49  Aligned_cols=89  Identities=19%  Similarity=0.275  Sum_probs=77.6

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---C--eEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---K--ENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~--~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~   81 (159)
                      ....|.|+|++|++|+..+ .+.+||||++++.   .  .+.+|++++++.||+|||+|.|.+..   .+..|.|+|||+
T Consensus        13 ~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~~~~l~~~V~~~   92 (136)
T cd08406          13 TAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQDLSLRVTVAES   92 (136)
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhCCcEEEEEEEeC
Confidence            3567999999999999998 8899999999985   1  25588899999999999999999875   356899999999


Q ss_pred             cCCCCCCccEEEEEeCcc
Q 044346           82 DSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~   99 (159)
                      +.++++++||++.+....
T Consensus        93 d~~~~~~~iG~v~lg~~~  110 (136)
T cd08406          93 TEDGKTPNVGHVIIGPAA  110 (136)
T ss_pred             CCCCCCCeeEEEEECCCC
Confidence            999999999999997653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=8e-17  Score=104.99  Aligned_cols=107  Identities=24%  Similarity=0.319  Sum_probs=82.3

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCCCCCcc
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~~d~~l   90 (159)
                      |+|+|++|++|+..  +.+||||.+.++.. .++|++..+ .+|.|||+|.|.+...   ...+.+.+||++....+.++
T Consensus         2 L~v~vi~a~~l~~~--~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~   78 (117)
T cd08383           2 LRLRILEAKNLPSK--GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVI   78 (117)
T ss_pred             eEEEEEEecCCCcC--CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeEE
Confidence            78999999999986  78999999999864 468988888 9999999999998763   35788889998877666677


Q ss_pred             EEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEE
Q 044346           91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRY  135 (159)
Q Consensus        91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~  135 (159)
                      |.+.+.  .+...+..         +.|+.+.+     ...|+|+|+++|
T Consensus        79 g~v~l~--~~~~~~~~---------~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          79 GKVALS--KLDLGQGK---------DEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEEec--CcCCCCcc---------eeEEECccCCCCCCcCceEEEEEEC
Confidence            765554  43322111         66777754     347999999876

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>PLN03008 Phospholipase D delta

Probab=99.74  E-value=1.1e-16  Score=130.84  Aligned_cols=118  Identities=23%  Similarity=0.318  Sum_probs=98.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-------------------------------------------CCCCCcEEEEEECCe-EE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-------------------------------------------HSGSDPCVFVMMAKE-NI   46 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-------------------------------------------~~~~dpy~~v~~~~~-~~   46 (159)
                      ..|.|.++|.+|++|+.++                                           .+.+||||++.++.. ..
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            4688999999999988521                                           135699999999854 55


Q ss_pred             EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC---
Q 044346           47 KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN---  123 (159)
Q Consensus        47 ~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~---  123 (159)
                      +|+++.++.||+|||+|.|.+..+...|.|+|||++.++ +++||++.++++++..+...         +.|+++.+   
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~v---------d~Wl~Ll~~~~  161 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAHPFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERI---------SGWFPVLGASG  161 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecCCCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCce---------EEEEEccccCC
Confidence            999999999999999999999988889999999999996 58999999999998775444         67777632   


Q ss_pred             ---CcccEEEEEEEEEeC
Q 044346          124 ---IECGKLQVQLRYCNL  138 (159)
Q Consensus       124 ---~~~G~l~l~l~~~~~  138 (159)
                         ...|+|+|+++|.|.
T Consensus       162 kp~k~~~kl~v~lqf~pv  179 (868)
T PLN03008        162 KPPKAETAIFIDMKFTPF  179 (868)
T ss_pred             CCCCCCcEEEEEEEEEEc
Confidence               346899999999876

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.74  E-value=2.8e-17  Score=110.14  Aligned_cols=100  Identities=17%  Similarity=0.271  Sum_probs=84.2

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeCC----------------CCcE
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTYP----------------NVPI   74 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~~----------------~~~l   74 (159)
                      |+|.|++|++|+.+..+.+|||+++++.    ...++|+++.++.+|.|+|.|.|.+...                ...|
T Consensus         1 L~V~Vi~A~~L~~~~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~l   80 (137)
T cd08675           1 LSVRVLECRDLALKSNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSEL   80 (137)
T ss_pred             CEEEEEEccCCCcccCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccEE
Confidence            5789999999987766789999999998    6788999999999999999999997653                3589


Q ss_pred             EEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           75 MLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        75 ~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      .|+|||.+.++++++||++.+++.++......         ..|+.+..
T Consensus        81 ~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~---------~~W~~L~~  120 (137)
T cd08675          81 RVELWHASMVSGDDFLGEVRIPLQGLQQAGSH---------QAWYFLQP  120 (137)
T ss_pred             EEEEEcCCcCcCCcEEEEEEEehhhccCCCcc---------cceEecCC
Confidence            99999999988999999999999997743222         55766643

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.74  E-value=1.3e-16  Score=107.36  Aligned_cols=114  Identities=16%  Similarity=0.157  Sum_probs=92.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccC-CC---
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDS-FT---   85 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~-~~---   85 (159)
                      ....|.|.|.+|++|+.++    +|||.+.+++... +|+++.++.+|.|+|.|.|....+-..+.|.||..+. .+   
T Consensus         9 ~~~sL~v~V~EAk~Lp~~~----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~~~~~l~v~v~k~~~~~~~~~   84 (146)
T cd04013           9 TENSLKLWIIEAKGLPPKK----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLPPVSVITVNLYRESDKKKKKD   84 (146)
T ss_pred             EEEEEEEEEEEccCCCCcC----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCCcccEEEEEEEEccCcccccc
Confidence            3457999999999998844    7999999998775 9999999999999999999877666789999986543 22   


Q ss_pred             CCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-------------CcccEEEEEEEEEe
Q 044346           86 KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-------------IECGKLQVQLRYCN  137 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-------------~~~G~l~l~l~~~~  137 (159)
                      ++++||.+.|+++++......         +.|+++.+             ...+.|+++++|.+
T Consensus        85 ~~~~IG~V~Ip~~~l~~~~~v---------e~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~  140 (146)
T cd04013          85 KSQLIGTVNIPVTDVSSRQFV---------EKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQS  140 (146)
T ss_pred             CCcEEEEEEEEHHHhcCCCcc---------cEEEEeecCCCCCccccccccCCCCEEEEEEEEEE
Confidence            578999999999998864444         66776622             23479999999985

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.74  E-value=2.6e-17  Score=109.80  Aligned_cols=90  Identities=28%  Similarity=0.352  Sum_probs=79.9

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+.     ....+|+++.++.+|.|||+|.|.+...   ...|.|+|||
T Consensus        10 ~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~~~l~~~V~d   89 (133)
T cd08384          10 TQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAKKTLEITVWD   89 (133)
T ss_pred             CCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCCCEEEEEEEe
Confidence            34678999999999999999 8899999999985     2467899999999999999999998753   4689999999


Q ss_pred             ccCCCCCCccEEEEEeCcc
Q 044346           81 HDSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~   99 (159)
                      ++..+++++||++.+++..
T Consensus        90 ~d~~~~~~~lG~~~i~l~~  108 (133)
T cd08384          90 KDIGKSNDYIGGLQLGINA  108 (133)
T ss_pred             CCCCCCccEEEEEEEecCC
Confidence            9999899999999999975

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.73  E-value=5.9e-17  Score=108.49  Aligned_cols=89  Identities=22%  Similarity=0.296  Sum_probs=78.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.  .   ...+|+++.++.||.|+|+|.|.+..   ....|.|+|||+
T Consensus        13 ~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~~~~l~~~v~d~   92 (136)
T cd08404          13 TTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELEDISVEFLVLDS   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhCCCEEEEEEEEC
Confidence            3568999999999999999 8899999999985  2   35688899999999999999999865   245789999999


Q ss_pred             cCCCCCCccEEEEEeCcc
Q 044346           82 DSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~   99 (159)
                      +.++++++||++.+++..
T Consensus        93 d~~~~~~~iG~~~~~~~~  110 (136)
T cd08404          93 DRVTKNEVIGRLVLGPKA  110 (136)
T ss_pred             CCCCCCccEEEEEECCcC
Confidence            999999999999999988

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.72  E-value=4.4e-17  Score=109.12  Aligned_cols=91  Identities=24%  Similarity=0.341  Sum_probs=79.3

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      +..+.|.|.|++|++|+.++ .+.+||||++.+.     ...++|+++.++.||.|+|.|.|.+...   ...|.|+|||
T Consensus        12 ~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~~l~~~v~d   91 (136)
T cd08402          12 PTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQKVHLIVTVLD   91 (136)
T ss_pred             CCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhCCCEEEEEEEe
Confidence            45678999999999999998 8899999999984     1356888889999999999999998643   2479999999


Q ss_pred             ccCCCCCCccEEEEEeCccc
Q 044346           81 HDSFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l  100 (159)
                      ++.++++++||++.+++...
T Consensus        92 ~~~~~~~~~iG~~~i~~~~~  111 (136)
T cd08402          92 YDRIGKNDPIGKVVLGCNAT  111 (136)
T ss_pred             CCCCCCCceeEEEEECCccC
Confidence            99999999999999999763

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.72  E-value=3.5e-18  Score=130.03  Aligned_cols=92  Identities=29%  Similarity=0.401  Sum_probs=84.1

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~   83 (159)
                      ...|+|.|.+|+||-+++ +|.+|||+++.+-     ..+++|++++.++||+|||+|.|.+.+.  ++.|.++||||+.
T Consensus       179 ~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRlsiEvWDWDr  258 (683)
T KOG0696|consen  179 RDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLSIEVWDWDR  258 (683)
T ss_pred             CceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeEEEEecccc
Confidence            346889999999999999 9999999999986     4577999999999999999999999875  5799999999999


Q ss_pred             CCCCCccEEEEEeCccchhh
Q 044346           84 FTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~  103 (159)
                      .++++|+|...+.+++|.++
T Consensus       259 TsRNDFMGslSFgisEl~K~  278 (683)
T KOG0696|consen  259 TSRNDFMGSLSFGISELQKA  278 (683)
T ss_pred             cccccccceecccHHHHhhc
Confidence            99999999999999999874

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.72  E-value=1e-16  Score=105.09  Aligned_cols=87  Identities=25%  Similarity=0.305  Sum_probs=75.4

Q ss_pred             EEEEeeCCCCCC-CCCCCcEEEEEECCe-------EEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccC----C
Q 044346           18 RIKQGVNLAIHD-HSGSDPCVFVMMAKE-------NIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDS----F   84 (159)
Q Consensus        18 ~v~~a~~L~~~~-~~~~dpy~~v~~~~~-------~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~----~   84 (159)
                      ..++|++|+..+ .+.+||||++++...       .++|+++.++.||.|+|.|.|.+.. ....+.|+|||++.    .
T Consensus         5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYFEEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEeEeeeEEEEEEEEecCCcCCC
Confidence            347899999999 889999999999743       4799999999999999999998653 35689999999997    7


Q ss_pred             CCCCccEEEEEeCccchhhc
Q 044346           85 TKDDRMKDAKIDIREYMKDV  104 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~~  104 (159)
                      +++++||++.+++.++..+.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~  104 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSP  104 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCC
Confidence            89999999999999987643

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.71  E-value=1e-16  Score=107.50  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=79.8

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---C---eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---K---ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~---~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~   79 (159)
                      ...+.|.|+|++|+||+..+ .+.+||||++++.   +   .+++|++..++.||+|||+|.|.+...   +..|.|+||
T Consensus        12 ~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l~~~~L~~~V~   91 (138)
T cd08408          12 ALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQLSEVTLMFSVY   91 (138)
T ss_pred             CCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHhCccEEEEEEE
Confidence            45688999999999999998 8899999999985   1   256899999999999999999998753   468999999


Q ss_pred             EccCCCCCCccEEEEEeCccc
Q 044346           80 DHDSFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l  100 (159)
                      +++.++++++||++.+++...
T Consensus        92 ~~~~~~~~~~iG~v~l~~~~~  112 (138)
T cd08408          92 NKRKMKRKEMIGWFSLGLNSS  112 (138)
T ss_pred             ECCCCCCCcEEEEEEECCcCC
Confidence            999999999999999988754

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.71  E-value=1e-16  Score=107.33  Aligned_cols=90  Identities=23%  Similarity=0.364  Sum_probs=79.0

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.     ....+|+++.++.||.|||.|.|.+...   +..|.|+|||+
T Consensus        13 ~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~~~~l~~~v~d~   92 (136)
T cd08405          13 TANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLRETTLIITVMDK   92 (136)
T ss_pred             CCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhCCCEEEEEEEEC
Confidence            4678999999999999988 8899999999873     2356899999999999999999997642   45899999999


Q ss_pred             cCCCCCCccEEEEEeCccc
Q 044346           82 DSFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l  100 (159)
                      +.++++++||++.+++.+.
T Consensus        93 ~~~~~~~~lG~~~i~~~~~  111 (136)
T cd08405          93 DRLSRNDLIGKIYLGWKSG  111 (136)
T ss_pred             CCCCCCcEeEEEEECCccC
Confidence            9999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.71  E-value=4.7e-16  Score=100.53  Aligned_cols=80  Identities=15%  Similarity=0.288  Sum_probs=69.5

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEc-------c
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDH-------D   82 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~-------~   82 (159)
                      |.|+|.+|+||+    +.+||||++.+.     ....+|+++.+|+||+|||+|.+.+. ....|.+.|||+       +
T Consensus         1 L~V~V~~A~~L~----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~-~s~~L~~~v~d~~~~~~~~d   75 (118)
T cd08686           1 LNVIVHSAQGFK----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELE-GSQTLRILCYEKCYSKVKLD   75 (118)
T ss_pred             CEEEEEeCCCCC----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeC-CCCEEEEEEEEccccccccc
Confidence            679999999995    468999999886     24689999999999999999999997 578999999998       4


Q ss_pred             CCCCCCccEEEEEeCcc
Q 044346           83 SFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~   99 (159)
                      ..+.|+.+|.+.+.|+.
T Consensus        76 ~~~~d~~~G~g~i~Ld~   92 (118)
T cd08686          76 GEGTDAIMGKGQIQLDP   92 (118)
T ss_pred             ccCcccEEEEEEEEECH
Confidence            66789999988888765

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.71  E-value=1.3e-16  Score=106.57  Aligned_cols=90  Identities=26%  Similarity=0.338  Sum_probs=78.0

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ...+.|+|+|++|++|+.++ .+.+||||++.+.     ....+|+++.++.+|.|+|.|.|.+...   ...|.|+|||
T Consensus        11 ~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~~~~l~~~v~d   90 (134)
T cd08403          11 PTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVDNVSLIIAVVD   90 (134)
T ss_pred             CCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhCCCEEEEEEEE
Confidence            45688999999999999999 8899999999984     2356888888999999999999987643   2469999999


Q ss_pred             ccCCCCCCccEEEEEeCcc
Q 044346           81 HDSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~   99 (159)
                      ++.++++++||++.+++..
T Consensus        91 ~~~~~~~~~IG~~~l~~~~  109 (134)
T cd08403          91 YDRVGHNELIGVCRVGPNA  109 (134)
T ss_pred             CCCCCCCceeEEEEECCCC
Confidence            9999999999999998774

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.70  E-value=5e-17  Score=129.13  Aligned_cols=134  Identities=19%  Similarity=0.179  Sum_probs=116.7

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      ..|.|+|.+|+||+..+ .|..||||++.+++ ...+|.++.+++.|.|.|.|.|.+...-..|.|.|||.| +++|+.|
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~~F~~l~fYv~D~d-~~~D~~I   83 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPRTFRYLSFYVWDRD-LKRDDII   83 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCcceeeEEEEEeccc-ccccccc
Confidence            45899999999999999 99999999999994 566999999999999999999999988899999999999 8999999


Q ss_pred             EEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEEeCCCCCce-EEEEEecccccc
Q 044346           91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYCNLPGSKGF-IMFYECSSLCSS  156 (159)
Q Consensus        91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~~~  156 (159)
                      |.+.+.=++|......         +-|+.+.     .+..|+|++++++.+..++.++ +.++.++.+++-
T Consensus        84 GKvai~re~l~~~~~~---------d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~  146 (800)
T KOG2059|consen   84 GKVAIKREDLHMYPGK---------DTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPI  146 (800)
T ss_pred             ceeeeeHHHHhhCCCC---------ccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCce
Confidence            9999988886653322         5576664     3678999999999988888899 999999888653

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.70  E-value=1.6e-16  Score=106.24  Aligned_cols=87  Identities=25%  Similarity=0.376  Sum_probs=75.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|.|++|++|+..+ .+.+||||++++.     ..+.+|+++.++.||.|||+|.|.+...   +..|.|+|||+
T Consensus        12 ~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~~~~l~~~V~d~   91 (135)
T cd08410          12 SAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELENVSLVFTVYGH   91 (135)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhCCCEEEEEEEeC
Confidence            4578999999999999999 8899999999973     2356889999999999999999998643   34699999999


Q ss_pred             cCCCCCCccEEEEEeC
Q 044346           82 DSFTKDDRMKDAKIDI   97 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l   97 (159)
                      +..+++++||++.+..
T Consensus        92 d~~~~~~~iG~~~l~~  107 (135)
T cd08410          92 NVKSSNDFIGRIVIGQ  107 (135)
T ss_pred             CCCCCCcEEEEEEEcC
Confidence            9999999999988654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.70  E-value=5.4e-17  Score=108.20  Aligned_cols=88  Identities=24%  Similarity=0.363  Sum_probs=79.0

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      .+.|.|+|.+|++|+..+ .+.+||||++++..     ..++|+++.++.+|.|+|+|.|.+...   ...|.|+|||++
T Consensus        13 ~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~~~~l~~~v~d~~   92 (134)
T cd00276          13 AERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLEEVSLVITVVDKD   92 (134)
T ss_pred             CCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhCCcEEEEEEEecC
Confidence            478999999999999988 88999999999862     256889999999999999999998764   468999999999


Q ss_pred             CCCCCCccEEEEEeCcc
Q 044346           83 SFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~   99 (159)
                      .++++++||.+.+++++
T Consensus        93 ~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          93 SVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCCCceeEEEEECCCC
Confidence            98899999999999998

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.70  E-value=1.2e-15  Score=100.92  Aligned_cols=110  Identities=30%  Similarity=0.417  Sum_probs=87.2

Q ss_pred             eEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC------CeEEEeecccCCC-CCccccEEEEEeeCCC-CcEEEEEEEc
Q 044346           13 LSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA------KENIKIRFIGNNV-NPEWNEVFPFSTTYPN-VPIMLSVCDH   81 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~------~~~~~t~~~~~~~-~P~w~e~~~~~~~~~~-~~l~~~v~d~   81 (159)
                      ..|+|+|++|++|+..+   .+..||||++++.      ..+++|+++.++. +|.|+|.|.|.+..+. ..|.|+|||+
T Consensus         2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~~l~~~V~d~   81 (128)
T cd00275           2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELAFLRFVVYDE   81 (128)
T ss_pred             eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeEEEEEEEEeC
Confidence            46899999999999876   5788999999984      4567888887765 9999999999987654 5789999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC---C--CcccEEEEEEEE
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT---N--IECGKLQVQLRY  135 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---~--~~~G~l~l~l~~  135 (159)
                      +.. ++++||.+.++++++..+            ..++.+.   +  ...|.|.+++++
T Consensus        82 ~~~-~~~~iG~~~~~l~~l~~g------------~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSG-DDDFLGQACLPLDSLRQG------------YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCC-CCcEeEEEEEEhHHhcCc------------eEEEEecCCCCCCCcceeEEEEEEE
Confidence            988 889999999999997432            1122331   2  456888888764

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.70  E-value=2.1e-16  Score=104.77  Aligned_cols=90  Identities=17%  Similarity=0.195  Sum_probs=77.1

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCC-CCccccEEEEEeeCC--CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNV-NPEWNEVFPFSTTYP--NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~-~P~w~e~~~~~~~~~--~~~l~~~v~d   80 (159)
                      ...+.|+|.|++|++|+++. .+..||||++.+.     ..+++|++++++. +|.|||.|.|.+...  +..|.+++||
T Consensus        11 p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~v~l~v~v~d   90 (135)
T cd08692          11 AVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHGIQFLIKLYS   90 (135)
T ss_pred             CcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhheeEEEEEEEe
Confidence            45678999999999999986 6777999999876     3467899998885 699999999998864  3478889999


Q ss_pred             ccCCCCCCccEEEEEeCcc
Q 044346           81 HDSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~   99 (159)
                      ++..+++++||++.+..+.
T Consensus        91 ~~~~~~n~~IG~v~lG~~~  109 (135)
T cd08692          91 RSSVRRKHFLGQVWISSDS  109 (135)
T ss_pred             CCCCcCCceEEEEEECCcc
Confidence            9999999999999999876

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.70  E-value=5.1e-16  Score=102.18  Aligned_cols=92  Identities=23%  Similarity=0.359  Sum_probs=79.2

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|+|.+|++|+..+ .+.+|||+++.+.     ....+|+++.++.+|.|++.|.|. +...   ...+.|++||
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~~~~~l~~~v~d   92 (123)
T cd04035          13 ANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDIQRKTLRLLVLD   92 (123)
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHhCCCEEEEEEEE
Confidence            3578999999999999988 7899999999874     346799999999999999999996 3321   4689999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      ++.+ ++++||++.++++++..+
T Consensus        93 ~~~~-~~~~iG~~~i~l~~l~~~  114 (123)
T cd04035          93 EDRF-GNDFLGETRIPLKKLKPN  114 (123)
T ss_pred             cCCc-CCeeEEEEEEEcccCCCC
Confidence            9988 889999999999997764

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.68  E-value=3e-16  Score=105.18  Aligned_cols=90  Identities=21%  Similarity=0.279  Sum_probs=77.0

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      ..+.|.|+|.+|++|+..+.+.+||||++.+..     .+++|++..++.||.|||.|.|.+...   ...|.|+||+++
T Consensus        13 ~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~~~~L~~~V~~~~   92 (137)
T cd08409          13 TLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLDTASLSLSVMQSG   92 (137)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhCccEEEEEEEeCC
Confidence            357899999999999987766799999999762     366888989999999999999998642   368999999999


Q ss_pred             CCCCCCccEEEEEeCccc
Q 044346           83 SFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l  100 (159)
                      ..+++++||++.+.....
T Consensus        93 ~~~~~~~lG~v~ig~~~~  110 (137)
T cd08409          93 GVRKSKLLGRVVLGPFMY  110 (137)
T ss_pred             CCCCcceEEEEEECCccc
Confidence            999999999999986543

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.65  E-value=1.2e-15  Score=98.41  Aligned_cols=85  Identities=26%  Similarity=0.340  Sum_probs=72.5

Q ss_pred             EEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEEeecccCCCCCccccEEEEEeeC-----CCCcEEEEEEEccCC
Q 044346           17 LRIKQGVNLAIHD-HSGSDPCVFVMMAK------ENIKIRFIGNNVNPEWNEVFPFSTTY-----PNVPIMLSVCDHDSF   84 (159)
Q Consensus        17 v~v~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~t~~~~~~~~P~w~e~~~~~~~~-----~~~~l~~~v~d~~~~   84 (159)
                      +..++|++|+..+ .+.+|||+++++..      ..++|+++.++.+|.|+ .|.+.+..     ....|.|+|||++.+
T Consensus         4 ~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047           4 ELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             EEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            3456899999999 88999999998753      25799999999999999 67776432     256999999999999


Q ss_pred             CCCCccEEEEEeCccchh
Q 044346           85 TKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~  102 (159)
                      ++|++||++.++++++..
T Consensus        83 ~~d~~iG~~~~~l~~l~~  100 (110)
T cd04047          83 GKHDLIGEFETTLDELLK  100 (110)
T ss_pred             CCCcEEEEEEEEHHHHhc
Confidence            999999999999999874

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.63  E-value=9.5e-16  Score=121.60  Aligned_cols=119  Identities=24%  Similarity=0.379  Sum_probs=103.3

Q ss_pred             ccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC
Q 044346            6 KGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF   84 (159)
Q Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~   84 (159)
                      +|.......++++|++|++|-.++ .|.+|||+++.+++.+.+|+++...+||+|+|.|+|.+.+....+++.|||.++.
T Consensus       288 egsskwsakitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechnstdrikvrvwded~d  367 (1283)
T KOG1011|consen  288 EGSSKWSAKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHNSTDRIKVRVWDEDND  367 (1283)
T ss_pred             ccccccceeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecCCCceeEEEEecCccc
Confidence            377788889999999999999999 9999999999999999999999999999999999999999999999999998752


Q ss_pred             -----------CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEE
Q 044346           85 -----------TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRY  135 (159)
Q Consensus        85 -----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~  135 (159)
                                 -.|+|+|++.+.+..|..+  +         +.|+.+.     ....|.|++++..
T Consensus       368 lksklrqkl~resddflgqtvievrtlsge--m---------dvwynlekrtdksavsgairlhisv  423 (1283)
T KOG1011|consen  368 LKSKLRQKLTRESDDFLGQTVIEVRTLSGE--M---------DVWYNLEKRTDKSAVSGAIRLHISV  423 (1283)
T ss_pred             HHHHHHHHhhhcccccccceeEEEEecccc--h---------hhhcchhhccchhhccceEEEEEEE
Confidence                       3588999999998887653  3         5576663     2568988888865

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.61  E-value=5e-15  Score=90.63  Aligned_cols=80  Identities=34%  Similarity=0.509  Sum_probs=71.9

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC---eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAK---ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~---~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~   89 (159)
                      |+|+|.+|++|+..+ .+..+||+.+.+..   ..++|+++.++.+|.|++.|.|.+..+ ...|.|+|||++..++|++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~~~V~~~~~~~~~~~   80 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPDLDSLSFEVWDKDSFGKDEL   80 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGCGTEEEEEEEEETSSSSEEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeecccccceEEEEEECCCCCCCCE
Confidence            789999999999988 88999999999985   678999999999999999999996654 4569999999999988999


Q ss_pred             cEEEE
Q 044346           90 MKDAK   94 (159)
Q Consensus        90 lG~~~   94 (159)
                      ||++.
T Consensus        81 iG~~~   85 (85)
T PF00168_consen   81 IGEVK   85 (85)
T ss_dssp             EEEEE
T ss_pred             EEEEC
Confidence            99874

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.50  E-value=5.6e-13  Score=83.49  Aligned_cols=89  Identities=30%  Similarity=0.531  Sum_probs=79.2

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECCe---EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCCCc
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE---NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~---~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d~~   89 (159)
                      |.|.|.+++++.... .+..+||+.+.+...   ..+|+...++.+|.|++.|.|.+... ...+.|+||++...+.+.+
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~~~~l~i~v~~~~~~~~~~~   81 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPELAELEIEVYDKDRFGRDDF   81 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcccCEEEEEEEecCCccCCce
Confidence            679999999999887 578999999999854   78999999988999999999998876 8899999999998877899


Q ss_pred             cEEEEEeCccchhh
Q 044346           90 MKDAKIDIREYMKD  103 (159)
Q Consensus        90 lG~~~i~l~~l~~~  103 (159)
                      +|.+.+++.++..+
T Consensus        82 ~G~~~~~l~~~~~~   95 (101)
T smart00239       82 IGQVTIPLSDLLLG   95 (101)
T ss_pred             eEEEEEEHHHcccC
Confidence            99999999887653

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.48  E-value=9.8e-13  Score=109.98  Aligned_cols=140  Identities=24%  Similarity=0.362  Sum_probs=111.8

Q ss_pred             CcccceEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccC
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDS   83 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~   83 (159)
                      ...+.|++.++|.+|+++...+   .+..|||+++.+. ....+|++..++.||+|||++.+.+..-++.|.+++||.+.
T Consensus       431 s~~aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns~~d~L~LslyD~n~  510 (1227)
T COG5038         431 SGTAIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTDPLNLSLYDFNS  510 (1227)
T ss_pred             cCCeeEEEEEEEeeccCcccccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecccCCceeEEEEeccc
Confidence            5678999999999999999877   7899999999977 33449999999999999999999998778999999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEeCC--------------CCC-ce--EE
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLP--------------GSK-GF--IM  146 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~--------------~~~-~l--~~  146 (159)
                      +.+|+.+|.+.++|..|..+....-+      ...+.......|+|...++|.+..              +.+ |+  +.
T Consensus       511 ~~sd~vvG~~~l~L~~L~~~~~~~ne------~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~t  584 (1227)
T COG5038         511 FKSDKVVGSTQLDLALLHQNPVKKNE------LYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVT  584 (1227)
T ss_pred             cCCcceeeeEEechHHhhhccccccc------eeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEE
Confidence            99999999999999998875433111      111222336678999999886442              223 55  78


Q ss_pred             EEEeccc
Q 044346          147 FYECSSL  153 (159)
Q Consensus       147 ~~~~~~l  153 (159)
                      +.++.+|
T Consensus       585 l~~~~~l  591 (1227)
T COG5038         585 LREVKAL  591 (1227)
T ss_pred             eeccccc
Confidence            8888877

>cd00030 C2 C2 domain

Probab=99.47  E-value=1.1e-12  Score=81.83  Aligned_cols=87  Identities=32%  Similarity=0.578  Sum_probs=78.5

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeC-CCCcEEEEEEEccCCCCCCccE
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTY-PNVPIMLSVCDHDSFTKDDRMK   91 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~-~~~~l~~~v~d~~~~~~d~~lG   91 (159)
                      |.|.+.+|++++... ....+||+.+.+.. ...+|.+...+.+|.|++.|.+.+.. ....+.|++|+++..+.++++|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~~~~~l~i~v~~~~~~~~~~~ig   80 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPESDTLTVEVWDKDRFSKDDFLG   80 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCCCCCEEEEEEEecCCCCCCceeE
Confidence            468999999998866 77899999999986 88899999999999999999999887 5788999999999888789999


Q ss_pred             EEEEeCccch
Q 044346           92 DAKIDIREYM  101 (159)
Q Consensus        92 ~~~i~l~~l~  101 (159)
                      .+.+++.++.
T Consensus        81 ~~~~~l~~l~   90 (102)
T cd00030          81 EVEIPLSELL   90 (102)
T ss_pred             EEEEeHHHhh
Confidence            9999999977

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02270 phospholipase D alpha

Probab=99.42  E-value=7.8e-12  Score=102.61  Aligned_cols=120  Identities=20%  Similarity=0.235  Sum_probs=98.2

Q ss_pred             ccceEEEEEEEEeeCCCCC-----------------C--CCCCCcEEEEEECCe-EEEeecccC-CCCCccccEEEEEee
Q 044346           10 TSLLSLRLRIKQGVNLAIH-----------------D--HSGSDPCVFVMMAKE-NIKIRFIGN-NVNPEWNEVFPFSTT   68 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~-----------------~--~~~~dpy~~v~~~~~-~~~t~~~~~-~~~P~w~e~~~~~~~   68 (159)
                      -..|.|.++|.+|++|+.+                 .  .+.++||+++.+++. ..+|+++.+ ..||.|+|+|.+++.
T Consensus         5 llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~a   84 (808)
T PLN02270          5 LLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCA   84 (808)
T ss_pred             eeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeec
Confidence            4578999999999999863                 1  256799999999954 559999987 469999999999999


Q ss_pred             CCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeCC
Q 044346           69 YPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNLP  139 (159)
Q Consensus        69 ~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~~  139 (159)
                      .....+.|.|.|.+.++. ++||.+.+|.+++..+..+         +.|+++-+      ....+|+++++|.+..
T Consensus        85 h~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i---------~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  151 (808)
T PLN02270         85 HMASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEV---------DRWVEILDNDKNPIHGGSKIHVKLQYFEVT  151 (808)
T ss_pred             cCcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCcc---------ccEEeccCCCCCcCCCCCEEEEEEEEEEcc
Confidence            888999999999999966 6999999999999886655         55766522      2235999999998753

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.40  E-value=3.8e-12  Score=84.34  Aligned_cols=88  Identities=22%  Similarity=0.266  Sum_probs=74.2

Q ss_pred             EEEEEEEeeCCCCCC---CC--CCCcEEEEEEC---CeEEEeecccCCCC--CccccEEEEEeeCC--------------
Q 044346           15 LRLRIKQGVNLAIHD---HS--GSDPCVFVMMA---KENIKIRFIGNNVN--PEWNEVFPFSTTYP--------------   70 (159)
Q Consensus        15 L~v~v~~a~~L~~~~---~~--~~dpy~~v~~~---~~~~~t~~~~~~~~--P~w~e~~~~~~~~~--------------   70 (159)
                      |+|.|.++++++...   .|  .+|||++..+.   ..+++|.+..+++|  |.||+.|.|.+..+              
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            789999999966533   45  49999999887   46789999999888  99999999886551              


Q ss_pred             ----------CCcEEEEEEEccCCCCCCccEEEEEeCccchh
Q 044346           71 ----------NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        71 ----------~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                                ...|.++|||.|.+++|+++|++.++|..+..
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~  123 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPR  123 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccc
Confidence                      24789999999999999999999999998654

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02223 phosphoinositide phospholipase C

Probab=99.35  E-value=2.1e-11  Score=96.51  Aligned_cols=92  Identities=25%  Similarity=0.394  Sum_probs=76.7

Q ss_pred             ceEEEEEEEEeeCCCCC-----C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCC-cEEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIH-----D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV-PIMLSVC   79 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~-----~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v~   79 (159)
                      ...|.|+|+.|++++..     + ....||||+|.+.     ...++|.+..++.||.|||+|.|.+..++. .|.|+|+
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PELAlLrf~V~  487 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPDLALISFEVY  487 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccCceEEEEEEE
Confidence            35799999999987521     2 4568999999986     335577777789999999999999988875 6899999


Q ss_pred             EccCCCCCCccEEEEEeCccchhh
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      |++..+.++|+|++.+|+..|..+
T Consensus       488 D~D~~~~ddfiGQ~~LPv~~Lr~G  511 (537)
T PLN02223        488 DYEVSTADAFCGQTCLPVSELIEG  511 (537)
T ss_pred             ecCCCCCCcEEEEEecchHHhcCC
Confidence            999988999999999999998764

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=5.9e-12  Score=98.42  Aligned_cols=89  Identities=26%  Similarity=0.330  Sum_probs=78.2

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..|.|+|.|.+|++|+.++ .+.+||||++++-     ..+.+|.+.+++.||+|||+|.|.+...   +..+.++|||+
T Consensus       296 ~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~~~~l~l~V~d~  375 (421)
T KOG1028|consen  296 TAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLAEVSLELTVWDH  375 (421)
T ss_pred             CCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhheeEEEEEEEEc
Confidence            4689999999999999999 9999999999876     3466888999999999999999987753   35889999999


Q ss_pred             cCCCCCCccEEEEEeCcc
Q 044346           82 DSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~   99 (159)
                      +.++++++||.+.+....
T Consensus       376 d~~~~~~~iG~~~lG~~~  393 (421)
T KOG1028|consen  376 DTLGSNDLIGRCILGSDS  393 (421)
T ss_pred             ccccccceeeEEEecCCC
Confidence            999999999998887664

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.32  E-value=9.2e-12  Score=104.30  Aligned_cols=102  Identities=25%  Similarity=0.335  Sum_probs=90.7

Q ss_pred             ccccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEE
Q 044346            4 ADKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCD   80 (159)
Q Consensus         4 ~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d   80 (159)
                      ....+....|-|+|.+..|.||+..+ ++-+||||.+.+..+ .++|+++++++||.|||.+..++.+. ...+.+.|+|
T Consensus      1031 ~~~emv~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~r~~D~~~i~v~D 1110 (1227)
T COG5038        1031 PPVEMVENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLNRVKDVLTINVND 1110 (1227)
T ss_pred             CcceeecccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeeccccceEEEEEee
Confidence            34466777899999999999999999 888999999999844 88999999999999999999998865 6789999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcc
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVK  105 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~  105 (159)
                      ++...+++.||.+.++|+.+..++.
T Consensus      1111 wd~~~knd~lg~~~idL~~l~~~~~ 1135 (1227)
T COG5038        1111 WDSGEKNDLLGTAEIDLSKLEPGGT 1135 (1227)
T ss_pred             cccCCCccccccccccHhhcCcCCc
Confidence            9999999999999999999876543

>PLN02952 phosphoinositide phospholipase C

Probab=99.25  E-value=2.4e-10  Score=92.09  Aligned_cols=92  Identities=24%  Similarity=0.348  Sum_probs=76.4

Q ss_pred             ceEEEEEEEEeeCCCCC------C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCC-cEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIH------D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNV-PIMLSV   78 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~------~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v   78 (159)
                      ...|.|+|+.|++++..      + ....|||+.+.+.     ..+.+|+++.++.||.|+|+|.|.+..++. .+.|.|
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PELAllrf~V  548 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPELALLRIEV  548 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCCccEEEEEE
Confidence            46799999999887532      1 2345899999876     356689999988999999999999887764 678999


Q ss_pred             EEccCCCCCCccEEEEEeCccchhh
Q 044346           79 CDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        79 ~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      ||++..+.++|+|++.+|+..|..+
T Consensus       549 ~D~D~~~~ddfiGq~~lPv~~Lr~G  573 (599)
T PLN02952        549 REYDMSEKDDFGGQTCLPVSELRPG  573 (599)
T ss_pred             EecCCCCCCCeEEEEEcchhHhcCC
Confidence            9999988899999999999998763

>PLN02222 phosphoinositide phospholipase C 2

Probab=99.21  E-value=7.1e-10  Score=89.12  Aligned_cols=92  Identities=28%  Similarity=0.320  Sum_probs=76.0

Q ss_pred             ceEEEEEEEEeeCCC--C----CC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEE
Q 044346           12 LLSLRLRIKQGVNLA--I----HD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSV   78 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~--~----~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v   78 (159)
                      ...|.|+|+.|++++  .    .+ ....|||+.+.+.     ..+.+|+++.++.+|.|+|.|.|.+..++ ..+.|.|
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~PeLAllRf~V  530 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPELALLRLEV  530 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCceeEEEEEE
Confidence            457999999998753  1    11 3467999999885     34668999988899999999999988776 4779999


Q ss_pred             EEccCCCCCCccEEEEEeCccchhh
Q 044346           79 CDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        79 ~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      +|+|..+.++|+|+..+|+..|..+
T Consensus       531 ~d~D~~~~ddfigq~~lPv~~Lr~G  555 (581)
T PLN02222        531 HEYDMSEKDDFGGQTCLPVWELSQG  555 (581)
T ss_pred             EECCCCCCCcEEEEEEcchhhhhCc
Confidence            9999888899999999999998764

>PLN02230 phosphoinositide phospholipase C 4

Probab=99.20  E-value=1.8e-10  Score=92.71  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=76.5

Q ss_pred             ceEEEEEEEEeeCCCCC------C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIH------D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSV   78 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~------~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v   78 (159)
                      ...|.|+|..|++++..      + ....||||++.+-     ..+.+|++..++.||.|+|+|.|.+..++ ..|.|.|
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPELAllRf~V  547 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPELALLRVEV  547 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCceeEEEEEE
Confidence            46799999999987521      2 3457999999886     33568888888999999999999988776 4779999


Q ss_pred             EEccCCCCCCccEEEEEeCccchhh
Q 044346           79 CDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        79 ~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      +|++...+|+|+|+..+|+..|..+
T Consensus       548 ~d~d~~~~ddfiGQ~~lPv~~Lr~G  572 (598)
T PLN02230        548 HEHDINEKDDFGGQTCLPVSEIRQG  572 (598)
T ss_pred             EECCCCCCCCEEEEEEcchHHhhCc
Confidence            9999988999999999999998764

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=99.19  E-value=3.1e-10  Score=91.97  Aligned_cols=114  Identities=25%  Similarity=0.394  Sum_probs=86.8

Q ss_pred             EEEEEEEEeeCCCCCC-C----CCCCcEEEEEEC-----CeEEEee-cccCCCCCccccEEEEEeeCCCC-cEEEEEEEc
Q 044346           14 SLRLRIKQGVNLAIHD-H----SGSDPCVFVMMA-----KENIKIR-FIGNNVNPEWNEVFPFSTTYPNV-PIMLSVCDH   81 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~----~~~dpy~~v~~~-----~~~~~t~-~~~~~~~P~w~e~~~~~~~~~~~-~l~~~v~d~   81 (159)
                      .|.|.|..|+++++.. .    ...|||+.+.+-     ....+|+ +..++-+|.|+|+|.|.+..|+. -+.|.|+|+
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAliRF~V~d~  696 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELALIRFEVHDY  696 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeEEEEEEEec
Confidence            6999999999766543 2    457899999876     3466888 44579999999999999998875 679999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC---CCcccEEEEEEEEEe
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT---NIECGKLQVQLRYCN  137 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---~~~~G~l~l~l~~~~  137 (159)
                      +..++|+|+|++.+|+..|..+-.          .+.|...   .-....|.+++++.+
T Consensus       697 d~~~~ddF~GQ~tlP~~~L~~GyR----------hVpL~~~~G~~~~~asLfv~i~~~~  745 (746)
T KOG0169|consen  697 DYIGKDDFIGQTTLPVSELRQGYR----------HVPLLSREGEALSSASLFVRIAIVE  745 (746)
T ss_pred             CCCCcccccceeeccHHHhhCcee----------eeeecCCCCccccceeEEEEEEEec
Confidence            999999999999999999876311          1111111   134567888887764

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.18  E-value=2.3e-10  Score=90.61  Aligned_cols=125  Identities=21%  Similarity=0.344  Sum_probs=102.0

Q ss_pred             ceEEEEEEEEeeCCCCCC--CCCCCcEEEEEECCeEEEeecccCCCCCccc-cEEEEEeeCC---CCcEEEEEEEccCCC
Q 044346           12 LLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMAKENIKIRFIGNNVNPEWN-EVFPFSTTYP---NVPIMLSVCDHDSFT   85 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~-e~~~~~~~~~---~~~l~~~v~d~~~~~   85 (159)
                      .|.|-|+|..|++||-++  +...|.|+.+.+....++|.+..+++||.|| +.|.|++...   ++.|++.++|++..+
T Consensus         2 pgkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtys   81 (1169)
T KOG1031|consen    2 PGKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYS   81 (1169)
T ss_pred             CCcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccccc
Confidence            467889999999999999  6778999999999999999999999999999 7899998763   579999999999999


Q ss_pred             CCCccEEEEEeCccchhhcc-cCCCCCceeeeEEeecCC---CcccEEEEEEEEE
Q 044346           86 KDDRMKDAKIDIREYMKDVK-INLEPRNAVKDLDLKLTN---IECGKLQVQLRYC  136 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~~~-~~~~~~~~~~~~~~~l~~---~~~G~l~l~l~~~  136 (159)
                      .++-||.+.++++.|..+.. ...+....+..-|++.-+   ..+|+|.+-++.-
T Consensus        82 andaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivkvd  136 (1169)
T KOG1031|consen   82 ANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVKVD  136 (1169)
T ss_pred             cccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEEEe
Confidence            99999999999999765422 222222234466776633   6789998877653

>PLN02228 Phosphoinositide phospholipase C

Probab=99.17  E-value=1.1e-09  Score=87.81  Aligned_cols=114  Identities=20%  Similarity=0.239  Sum_probs=86.8

Q ss_pred             ceEEEEEEEEeeCCCC---C---C-CCCCCcEEEEEEC-----CeEEEeecccCCCCCcc-ccEEEEEeeCCC-CcEEEE
Q 044346           12 LLSLRLRIKQGVNLAI---H---D-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEW-NEVFPFSTTYPN-VPIMLS   77 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~---~---~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w-~e~~~~~~~~~~-~~l~~~   77 (159)
                      ...|.|+|+.|++|+.   .   + ....||||.+.+.     ...++|+++.++.+|.| +|.|.|.+..++ ..|.|.
T Consensus       430 ~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pELA~lRf~  509 (567)
T PLN02228        430 KTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPELALLWFK  509 (567)
T ss_pred             CceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCceeEEEEE
Confidence            3479999999998731   1   1 2347999999875     34568888888899999 999999988776 477999


Q ss_pred             EEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEEe
Q 044346           78 VCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYCN  137 (159)
Q Consensus        78 v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~~  137 (159)
                      |+|++..+.++|+|++.+++..|..+            .....|.     .-..++|.+++.+.+
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~G------------YR~VpL~~~~G~~l~~atLfv~~~~~~  562 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSG------------VRAVRLHDRAGKAYKNTRLLVSFALDP  562 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCC------------eeEEEccCCCCCCCCCeEEEEEEEEcC
Confidence            99999888999999999999998763            1112221     123567888888764

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.10  E-value=2.7e-11  Score=89.62  Aligned_cols=136  Identities=22%  Similarity=0.374  Sum_probs=105.5

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEEc
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCDH   81 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~   81 (159)
                      ...+..++.+|++|.+++ .+..|||+...+.     ..+.+|++..++.||.|+|...+. +...   ...+.+.+.|.
T Consensus        92 ~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~~~~K~~Rk~vcdn  171 (362)
T KOG1013|consen   92 SRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDDTHLKVLRKVVCDN  171 (362)
T ss_pred             hhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccchhhhhhhheeeccC
Confidence            346788999999999999 9999999998886     345788899999999999987776 3322   23677889999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe----ec------CCCcccEEEEEEEEEeCCCCCce-EEEEEe
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL----KL------TNIECGKLQVQLRYCNLPGSKGF-IMFYEC  150 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~----~l------~~~~~G~l~l~l~~~~~~~~~~l-~~~~~~  150 (159)
                      +.+..++++|+..+++..+...+.-..       ..||    +.      ..+++|+|.+++.|.  +..+++ +++++|
T Consensus       172 ~~~~~~~sqGq~r~~lkKl~p~q~k~f-------~~cl~~~lp~~rad~~~~E~rg~i~isl~~~--s~~~~l~vt~iRc  242 (362)
T KOG1013|consen  172 DKKTHNESQGQSRVSLKKLKPLQRKSF-------NICLEKSLPSERADRDEDEERGAILISLAYS--STTPGLIVTIIRC  242 (362)
T ss_pred             cccccccCcccchhhhhccChhhcchh-------hhhhhccCCcccccccchhhccceeeeeccC--cCCCceEEEEEEe
Confidence            999899999999988888766433211       1121    11      126789999999997  667788 999999


Q ss_pred             cccccc
Q 044346          151 SSLCSS  156 (159)
Q Consensus       151 ~~l~~~  156 (159)
                      ++|++|
T Consensus       243 ~~l~ss  248 (362)
T KOG1013|consen  243 SHLASS  248 (362)
T ss_pred             eeeecc
Confidence            999654

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=99.06  E-value=1.1e-09  Score=89.45  Aligned_cols=91  Identities=21%  Similarity=0.341  Sum_probs=77.3

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEE-EeecccCCCCCccc-cEEEEEeeCCC-CcEEEEEEEccCC
Q 044346           13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENI-KIRFIGNNVNPEWN-EVFPFSTTYPN-VPIMLSVCDHDSF   84 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~-~t~~~~~~~~P~w~-e~~~~~~~~~~-~~l~~~v~d~~~~   84 (159)
                      ..|.|.|+.|+.|+....+...||+.+.+.     ..++ .|.+..+++||+|+ +.|.|.+.+|+ ..|.|.|++.|.+
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nPe~A~lRF~V~eeDmf 1144 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNPEFAFLRFVVYEEDMF 1144 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCCceEEEEEEEeccccc
Confidence            678999999999997666677799999876     3344 45566689999999 99999999886 5889999999999


Q ss_pred             CCCCccEEEEEeCccchhh
Q 044346           85 TKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~  103 (159)
                      +...|||++.+|+..+..+
T Consensus      1145 s~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1145 SDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred             CCcceeeeeecchhhhhcc
Confidence            9888999999999987763

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.04  E-value=5.9e-11  Score=95.59  Aligned_cols=90  Identities=21%  Similarity=0.348  Sum_probs=79.2

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCC-----CCcEEEEEE
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYP-----NVPIMLSVC   79 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~-----~~~l~~~v~   79 (159)
                      -.|.|.|+.|+++.+.+ +|.+||||++.+.       -..++|++..+|+||+|+|+|.|.+...     ...+.|+||
T Consensus       947 q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~c~te~Am~~FTVM 1026 (1103)
T KOG1328|consen  947 QTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEPCSTETAMLHFTVM 1026 (1103)
T ss_pred             cchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccccccccceEEEEee
Confidence            35778889999999999 9999999999988       3467999999999999999999998863     237899999


Q ss_pred             EccCCCCCCccEEEEEeCccchh
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      |||-.+.+||-|++.+.|+++-.
T Consensus      1027 DHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1027 DHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             ccceecccccchHHHHhhCCCCC
Confidence            99999999999999999998644

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.97  E-value=6.2e-09  Score=65.62  Aligned_cols=84  Identities=13%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             EEEEEEEeeCCCCCC----CCCCCcEEEEEECCe-EEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCc
Q 044346           15 LRLRIKQGVNLAIHD----HSGSDPCVFVMMAKE-NIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDR   89 (159)
Q Consensus        15 L~v~v~~a~~L~~~~----~~~~dpy~~v~~~~~-~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~   89 (159)
                      |.|+|..++++....    ++.++||+.+.++.. +.+|+.   +.||.|||.|.|.+. ....+.+.+||...- ..-.
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~---srnd~WnE~F~i~Vd-k~nEiel~VyDk~~~-~~~P   75 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKP---SRNDRWNEDFEIPVE-KNNEEEVIVYDKGGD-QPVP   75 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccC---CCCCcccceEEEEec-CCcEEEEEEEeCCCC-eecc
Confidence            578999999998765    567899999999954 777776   478999999999995 688999999998654 4458


Q ss_pred             cEEEEEeCccchhh
Q 044346           90 MKDAKIDIREYMKD  103 (159)
Q Consensus        90 lG~~~i~l~~l~~~  103 (159)
                      +|..=+.++++..+
T Consensus        76 i~llW~~~sdi~Ee   89 (109)
T cd08689          76 VGLLWLRLSDIAEE   89 (109)
T ss_pred             eeeehhhHHHHHHH
Confidence            89888888888764

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>PLN02352 phospholipase D epsilon

Probab=98.87  E-value=1e-07  Score=78.58  Aligned_cols=113  Identities=15%  Similarity=0.163  Sum_probs=83.4

Q ss_pred             cccceEEEEEEEEeeCCCCC----C--CCCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCC-CcEEEEEEE
Q 044346            9 RTSLLSLRLRIKQGVNLAIH----D--HSGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCD   80 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~----~--~~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d   80 (159)
                      .-..|.|.++|.+|.-+...    .  ....+||+++.+++.+. +|   .+..||.|+|+|.+++.... ..+.|.|.|
T Consensus         6 ~~lhg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~~~~~~~f~vk~   82 (758)
T PLN02352          6 KFFHGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHPLDSTITITLKT   82 (758)
T ss_pred             cccccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeeecCCcEEEEEec
Confidence            34578999999999733221    1  12239999999985544 66   55559999999999998776 689999988


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcc-cCCCCCceeeeEEeecCC----Ccc-cEEEEEEEEEeC
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVK-INLEPRNAVKDLDLKLTN----IEC-GKLQVQLRYCNL  138 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~-~~~~~~~~~~~~~~~l~~----~~~-G~l~l~l~~~~~  138 (159)
                           .-.+||.+.++.+++..+.. +         +.|+++-+    ... .+|+++++|.+.
T Consensus        83 -----~~~~ig~~~~p~~~~~~g~~~~---------~~~~~~~~~~~~p~~~~~~~~~~~~~~~  132 (758)
T PLN02352         83 -----KCSILGRFHIQAHQIVTEASFI---------NGFFPLIMENGKPNPELKLRFMLWFRPA  132 (758)
T ss_pred             -----CCeEEEEEEEEHHHhhCCCccc---------ceEEEcccCCCCCCCCCEEEEEEEEEEh
Confidence                 24799999999999887544 3         55666522    223 599999999875

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.84  E-value=5.3e-10  Score=90.25  Aligned_cols=115  Identities=23%  Similarity=0.304  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-------------------------------eEEEeecccCCCCCcc
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-------------------------------ENIKIRFIGNNVNPEW   59 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-------------------------------~~~~t~~~~~~~~P~w   59 (159)
                      ...+.|.+..|++|-.++ +|.+|||+...+-.                               -.+-|++..+|+||.|
T Consensus       113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW  192 (1103)
T KOG1328|consen  113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW  192 (1103)
T ss_pred             cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence            445667778899999999 99999999976530                               0234667778999999


Q ss_pred             ccEEEEEeeCC-CCcEEEEEEEccCC---------------------------------CC---CCccEEEEEeCccchh
Q 044346           60 NEVFPFSTTYP-NVPIMLSVCDHDSF---------------------------------TK---DDRMKDAKIDIREYMK  102 (159)
Q Consensus        60 ~e~~~~~~~~~-~~~l~~~v~d~~~~---------------------------------~~---d~~lG~~~i~l~~l~~  102 (159)
                      +|.|.|.+..- ...+.+-|||||.-                                 +.   |||+|.+.++|.++-.
T Consensus       193 ~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~EiP~  272 (1103)
T KOG1328|consen  193 SEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAEIPP  272 (1103)
T ss_pred             hhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhcCCc
Confidence            99999998874 57899999999752                                 33   7899999999998533


Q ss_pred             hcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEE
Q 044346          103 DVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYC  136 (159)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~  136 (159)
                      .       |-   +.|+.++     ....|.+++++-.+
T Consensus       273 ~-------Gl---d~WFkLepRS~~S~VqG~~~LklwLs  301 (1103)
T KOG1328|consen  273 D-------GL---DQWFKLEPRSDKSKVQGQVKLKLWLS  301 (1103)
T ss_pred             c-------hH---HHHhccCcccccccccceEEEEEEEe
Confidence            1       11   5676663     36789999998654

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.82  E-value=3.8e-09  Score=87.67  Aligned_cols=91  Identities=22%  Similarity=0.474  Sum_probs=80.9

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEE--EeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENI--KIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFT   85 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~--~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~   85 (159)
                      .-...++|++++|.+|.+.| +|.+|||+.+.+++...  +...+.+++||+|++.|.+.+.-+ +..++++|||+|.++
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~lp~ek~l~v~vyd~D~~~  689 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLLPFEKDLIVEVYDHDLEA  689 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhcccchhhcceeEEEEeeccc
Confidence            34567789999999999999 99999999999997664  666788999999999999998776 678999999999999


Q ss_pred             CCCccEEEEEeCccc
Q 044346           86 KDDRMKDAKIDIREY  100 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l  100 (159)
                      +|+.+|+..++|+.-
T Consensus       690 ~d~~iget~iDLEnR  704 (1105)
T KOG1326|consen  690 QDEKIGETTIDLENR  704 (1105)
T ss_pred             ccchhhceehhhhhc
Confidence            999999999999864

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.64  E-value=6.8e-08  Score=77.98  Aligned_cols=107  Identities=16%  Similarity=0.204  Sum_probs=77.2

Q ss_pred             EeeCCCCCCCCCCCcEEEEEECCe----EEEeecccCCCCCccccEEEEEeeCC----------------CCcEEEEEEE
Q 044346           21 QGVNLAIHDHSGSDPCVFVMMAKE----NIKIRFIGNNVNPEWNEVFPFSTTYP----------------NVPIMLSVCD   80 (159)
Q Consensus        21 ~a~~L~~~~~~~~dpy~~v~~~~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----------------~~~l~~~v~d   80 (159)
                      .++.+.+..++.+|||+++...+.    ..+|++..+|.+|.|+|.|.|.+...                -..+.+.+|+
T Consensus       139 ~~r~~~P~~~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~  218 (800)
T KOG2059|consen  139 KTRQGLPIINGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWN  218 (800)
T ss_pred             hhcccCceeCCCCCcceEEeecccchhhccccceeeeccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeecc
Confidence            344444555567999999988733    35899999999999999999987654                1267889998


Q ss_pred             -ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec----------CCCcccEEEEEEEEE
Q 044346           81 -HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL----------TNIECGKLQVQLRYC  136 (159)
Q Consensus        81 -~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l----------~~~~~G~l~l~l~~~  136 (159)
                       .+....++|+|++.+++..+.....-         ..|+.+          .+...|.+++.++|.
T Consensus       219 ~~~~~~~~~FlGevrv~v~~~~~~s~p---------~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~  276 (800)
T KOG2059|consen  219 DLNLVINDVFLGEVRVPVDVLRQKSSP---------AAWYYLQPRPNGEKSSDGGDLGSLRLNVTYT  276 (800)
T ss_pred             chhhhhhhhhceeEEeehhhhhhccCc---------cceEEEecCCCcccCCCCCCccceeeeEEee
Confidence             55566689999999999987631111         234433          124568899999885

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.62  E-value=4.6e-08  Score=82.75  Aligned_cols=96  Identities=15%  Similarity=0.185  Sum_probs=80.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d   80 (159)
                      -.+.|+|.|..+++|+... +..+||||+.++.     ..+.+|+++++|.+|.|||.+.+.-.+    ..+.|+++||.
T Consensus      1522 ~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~l~qReLQ~sVls 1601 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEILQQRELQVSVLS 1601 (1639)
T ss_pred             cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhhhhhheeeeeeec
Confidence            3678999999999997666 8899999999997     346699999999999999998877322    14789999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhccc
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~~  106 (159)
                      .+.+..+.++|.+.++|.++...++.
T Consensus      1602 ~~~~~en~~lg~v~i~L~~~~l~kE~ 1627 (1639)
T KOG0905|consen 1602 NGGLLENVFLGGVNIPLLKVDLLKES 1627 (1639)
T ss_pred             ccceeeeeeeeeeecchhhcchhhhh
Confidence            99998899999999999987665444

>PLN02964 phosphatidylserine decarboxylase

Probab=98.24  E-value=3.4e-06  Score=69.09  Aligned_cols=90  Identities=11%  Similarity=0.132  Sum_probs=72.7

Q ss_pred             CcccceEEEEEEEEeeCCCCCCCCCCCcEE-EEEECCeEEEeecccCCCCCccccEEEEEeeCCC-CcEEEEEEEccCCC
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHDHSGSDPCV-FVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN-VPIMLSVCDHDSFT   85 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~-~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~-~~l~~~v~d~~~~~   85 (159)
                      .+...|...+++.+|+    ++  ..|+|. .+.++.+.++|....+|.+|+||+...|.+...+ ....|.|||.+.++
T Consensus        49 ~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  122 (644)
T PLN02964         49 AEDFSGIALLTLVGAE----MK--FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNGPHLARISVFETNRLS  122 (644)
T ss_pred             cccccCeEEEEeehhh----hc--cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCCcceEEEEEEecCCCC
Confidence            3455778888888876    22  357755 4677899999999999999999999888887653 34599999999999


Q ss_pred             CCCccEEEEEeCccchhh
Q 044346           86 KDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l~~~  103 (159)
                      +++.+|.+.++|.++...
T Consensus       123 ~n~lv~~~e~~~t~f~~k  140 (644)
T PLN02964        123 KNTLVGYCELDLFDFVTQ  140 (644)
T ss_pred             HHHhhhheeecHhhccHH
Confidence            999999999988776553

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=98.19  E-value=2e-06  Score=66.00  Aligned_cols=118  Identities=20%  Similarity=0.269  Sum_probs=86.8

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---C---------CcEEE
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---N---------VPIML   76 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~---------~~l~~   76 (159)
                      |.+.|+++.+++... .-..|-|+.+.+.     ..+.+|.+++.|.+|.|+|.|-+.+...   +         ..++|
T Consensus       369 lel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kf  448 (523)
T KOG3837|consen  369 LELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKF  448 (523)
T ss_pred             hHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHhcCeeE
Confidence            556667777665544 2234567776654     4566888999999999999999998761   1         27999


Q ss_pred             EEEEccCCC-CCCccEEEEEeCccchhhcccCCCCCceeeeEEeec---CCCcccEEEEEEEEEeCCCC
Q 044346           77 SVCDHDSFT-KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL---TNIECGKLQVQLRYCNLPGS  141 (159)
Q Consensus        77 ~v~d~~~~~-~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~G~l~l~l~~~~~~~~  141 (159)
                      +||+.+.|- +|.++|.+.+.|..|....++..         .+++   +....|+|.++++...+.+.
T Consensus       449 eifhkggf~rSdkl~gt~nikle~Len~cei~e---------~~~l~DGRK~vGGkLevKvRiR~Pi~~  508 (523)
T KOG3837|consen  449 EIFHKGGFNRSDKLTGTGNIKLEILENMCEICE---------YLPLKDGRKAVGGKLEVKVRIRQPIGD  508 (523)
T ss_pred             EEeeccccccccceeceeeeeehhhhcccchhh---------ceeccccccccCCeeEEEEEEecccch
Confidence            999998864 57799999999999988766632         2233   34678999999998766543

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=4.8e-06  Score=62.25  Aligned_cols=86  Identities=26%  Similarity=0.275  Sum_probs=71.9

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCC---CcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPN---VPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d~   81 (159)
                      ....+.|++.++..|..++ ++-+|||+...+.     .-+.+|...+++.+|.|+++|.+.+.+.+   ..+.+.+||.
T Consensus       231 ~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdLa~~kv~lsvgd~  310 (362)
T KOG1013|consen  231 TTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDLAYKKVALSVGDY  310 (362)
T ss_pred             CCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccchhcceEEEeeccc
Confidence            3556889999999999999 9999999999876     34568888889999999999999998753   4788999999


Q ss_pred             cCCCCCCccEEEEEe
Q 044346           82 DSFTKDDRMKDAKID   96 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~   96 (159)
                      +.....+++|-....
T Consensus       311 ~~G~s~d~~GG~~~g  325 (362)
T KOG1013|consen  311 DIGKSNDSIGGSMLG  325 (362)
T ss_pred             CCCcCccCCCccccc
Confidence            988777888865544

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.98  E-value=3.2e-05  Score=50.60  Aligned_cols=89  Identities=21%  Similarity=0.368  Sum_probs=65.9

Q ss_pred             EEEEEEEeeCCCCC-----------C---CCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeC-----C-
Q 044346           15 LRLRIKQGVNLAIH-----------D---HSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTY-----P-   70 (159)
Q Consensus        15 L~v~v~~a~~L~~~-----------~---~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~-----~-   70 (159)
                      |.|.|.+|.+|+..           .   .-.-++|+++.+.    .+..+|+++.++..|.|+-+++|.+.-     . 
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            35667777777521           1   1234789999865    667799999999999999999998762     1 


Q ss_pred             ----------CCcEEEEEEEccCCC----------CCCccEEEEEeCccchhh
Q 044346           71 ----------NVPIMLSVCDHDSFT----------KDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        71 ----------~~~l~~~v~d~~~~~----------~d~~lG~~~i~l~~l~~~  103 (159)
                                ...+.|++|+..+.+          +|-.+|.+.+|+.+|+..
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~  133 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTK  133 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhc
Confidence                      127889999876433          344899999999998864

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.95  E-value=1.9e-05  Score=48.25  Aligned_cols=84  Identities=10%  Similarity=0.183  Sum_probs=63.2

Q ss_pred             EEEEEeeCCCCCC--CCCCCcEEEEE--EC-CeEEEeecccCCCCCccccEEEEEeeC---CCCcEEEEEEEccCCCCCC
Q 044346           17 LRIKQGVNLAIHD--HSGSDPCVFVM--MA-KENIKIRFIGNNVNPEWNEVFPFSTTY---PNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        17 v~v~~a~~L~~~~--~~~~dpy~~v~--~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~---~~~~l~~~v~d~~~~~~d~   88 (159)
                      |+++.++++....  ...+..|++--  +. ...++|+......||+|.|+|.|.+..   +...|.|.|+.  ...+.+
T Consensus         3 itv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RKe   80 (103)
T cd08684           3 ITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRKR   80 (103)
T ss_pred             EEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCccc
Confidence            6788899987665  33444566533  33 446688888899999999999998664   35688899998  344678


Q ss_pred             ccEEEEEeCccchh
Q 044346           89 RMKDAKIDIREYMK  102 (159)
Q Consensus        89 ~lG~~~i~l~~l~~  102 (159)
                      .||.+.+.++++-.
T Consensus        81 ~iG~~sL~l~s~ge   94 (103)
T cd08684          81 TIGECSLSLRTLST   94 (103)
T ss_pred             eeeEEEeecccCCH
Confidence            99999999998654

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.91  E-value=7.3e-05  Score=60.83  Aligned_cols=93  Identities=18%  Similarity=0.197  Sum_probs=74.7

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeecccCCCCCccccEEEEEeeCCC----CcEEEEEEEcc
Q 044346           14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIGNNVNPEWNEVFPFSTTYPN----VPIMLSVCDHD   82 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~~~~~P~w~e~~~~~~~~~~----~~l~~~v~d~~   82 (159)
                      .++|.|+.|.+|....+|...||+.+.+-       ++++.|+...++-.|.|||+|+|.+.+..    ..|.|.|-|+=
T Consensus      1126 kvtvkvvaandlkwqtsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VKDYC 1205 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQTSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVKDYC 1205 (1283)
T ss_pred             eEEEEEEecccccchhccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeehhhe
Confidence            57788899999988777888899999875       45678888888889999999999987642    36778887765


Q ss_pred             CCCCCCccEEEEEeCccchhhccc
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~  106 (159)
                      =...|+.+|.+.++|.++...+..
T Consensus      1206 FAReDRvvGl~VlqL~~va~kGS~ 1229 (1283)
T KOG1011|consen 1206 FAREDRVVGLAVLQLRSVADKGSC 1229 (1283)
T ss_pred             eecccceeeeeeeehhhHhhcCce
Confidence            455677999999999998775444

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=6.3e-06  Score=62.55  Aligned_cols=96  Identities=18%  Similarity=0.173  Sum_probs=80.0

Q ss_pred             CcccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEE
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCD   80 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d   80 (159)
                      .....|.+.|.|++|++|..+.  ...+.||++|++.     ..+.+|+...+|.+|.+-..+.|.-.++...|.+.+|-
T Consensus       264 ~~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp~~k~Lq~tv~g  343 (405)
T KOG2060|consen  264 LMDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSPPGKYLQGTVWG  343 (405)
T ss_pred             hhcccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhccCCCccEEEEEEec
Confidence            3456789999999999998766  5588999999986     34668888899999999998899888888999999994


Q ss_pred             -ccCCCCCCccEEEEEeCccchhh
Q 044346           81 -HDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        81 -~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                       ....-++.|+|.+++-+++|...
T Consensus       344 dygRmd~k~fmg~aqi~l~eL~ls  367 (405)
T KOG2060|consen  344 DYGRMDHKSFMGVAQIMLDELNLS  367 (405)
T ss_pred             cccccchHHHhhHHHHHhhhhccc
Confidence             66666778999999999997653

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=97.83  E-value=0.0011  Score=45.13  Aligned_cols=124  Identities=15%  Similarity=0.180  Sum_probs=83.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-C--CCCCc--EEEEEECCeEEEeecccCCCCCccccEEEEEeeCCC--------------
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H--SGSDP--CVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN--------------   71 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~--~~~dp--y~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~--------------   71 (159)
                      ....|.+.|..++-..... .  +..+.  .+-+.+.+++++|+.+..+.+|.|+|.|.|++....              
T Consensus         7 ~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~   86 (156)
T PF15627_consen    7 GRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLSIS   86 (156)
T ss_pred             CceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhcCC
Confidence            3456788888775333222 1  23333  333445599999999999999999999999976532              


Q ss_pred             CcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe-ecCC---CcccEEEEEEEEEeCC
Q 044346           72 VPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL-KLTN---IECGKLQVQLRYCNLP  139 (159)
Q Consensus        72 ~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~-~l~~---~~~G~l~l~l~~~~~~  139 (159)
                      +.+.+-+..-+..+...++|.-.++...+...+.....     ....+ -..+   .+.|.|.+++...|..
T Consensus        87 ~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~-----~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   87 DPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTS-----FTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CceEEEEEEecCCCceEeeeeceehHHHHhccCCCccc-----eeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            37888888888776668999999999887765443110     01111 1122   3789999999998654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=97.64  E-value=0.00011  Score=58.56  Aligned_cols=82  Identities=27%  Similarity=0.375  Sum_probs=65.9

Q ss_pred             EEeeCCCCCC-CCCCCcEEEEEEC------CeEEEeecccCCCCCccccEEEEE-----eeCCCCcEEEEEEEccCCCCC
Q 044346           20 KQGVNLAIHD-HSGSDPCVFVMMA------KENIKIRFIGNNVNPEWNEVFPFS-----TTYPNVPIMLSVCDHDSFTKD   87 (159)
Q Consensus        20 ~~a~~L~~~~-~~~~dpy~~v~~~------~~~~~t~~~~~~~~P~w~e~~~~~-----~~~~~~~l~~~v~d~~~~~~d   87 (159)
                      ++|.+|..++ ++.+|||..+.--      ...++|.++.++++|.|.+ |.+.     -...+..+.+.+||++..+++
T Consensus       143 ~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~~~~~~~  221 (529)
T KOG1327|consen  143 FRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDYDSNGKH  221 (529)
T ss_pred             eeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEeccCCCCCc
Confidence            4578888999 9999999987643      2356899999999999975 3333     222467899999999999999


Q ss_pred             CccEEEEEeCccchh
Q 044346           88 DRMKDAKIDIREYMK  102 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~  102 (159)
                      +++|.+..++.++..
T Consensus       222 ~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  222 DLIGKFQTTLSELQE  236 (529)
T ss_pred             CceeEecccHHHhcc
Confidence            999999999998863

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=97.57  E-value=1.4e-05  Score=67.21  Aligned_cols=84  Identities=21%  Similarity=0.233  Sum_probs=69.6

Q ss_pred             EEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEE---eeCC-------CCcEEEEEEEcc
Q 044346           14 SLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFS---TTYP-------NVPIMLSVCDHD   82 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~---~~~~-------~~~l~~~v~d~~   82 (159)
                      .+++++.+|+.|...+ .+.+|||+.+.+..+.+.|-++..|+||.|+....|.   +...       -..+.|++||.+
T Consensus       207 ~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~d  286 (1105)
T KOG1326|consen  207 PLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLD  286 (1105)
T ss_pred             hhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhcCCCeEEEEeehhh
Confidence            4566677888888888 8899999999999999999999999999999998886   2211       126789999999


Q ss_pred             CCCCCCccEEEEEeC
Q 044346           83 SFTKDDRMKDAKIDI   97 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l   97 (159)
                      ..+.++|+|+.....
T Consensus       287 r~g~~ef~gr~~~~p  301 (1105)
T KOG1326|consen  287 RSGINEFKGRKKQRP  301 (1105)
T ss_pred             hhchHHhhcccccce
Confidence            999999999876653

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=97.17  E-value=0.015  Score=44.62  Aligned_cols=115  Identities=18%  Similarity=0.191  Sum_probs=84.9

Q ss_pred             EEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC--------CCCcEEEEEEEcc-CCC
Q 044346           15 LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--------PNVPIMLSVCDHD-SFT   85 (159)
Q Consensus        15 L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~--------~~~~l~~~v~d~~-~~~   85 (159)
                      +.+.|++|++.+...  .....+...+++....|..+..+..|.|+..+.+++..        ....+++++|.-+ ..+
T Consensus         2 ivl~i~egr~F~~~~--~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~~   79 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP--RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGSTG   79 (340)
T ss_pred             EEEEEecccCCCCCC--CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCCC
Confidence            578899999988753  34457778888999999999999999999999998764        2468999999877 555


Q ss_pred             CCCccEEEEEeCccc---hhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeC
Q 044346           86 KDDRMKDAKIDIREY---MKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNL  138 (159)
Q Consensus        86 ~d~~lG~~~i~l~~l---~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~  138 (159)
                      ..+.+|.+-++|...   ...       ....+..|+++-+      ..+.+|.+.+...+.
T Consensus        80 ~re~iGyv~LdLRsa~~~~~~-------~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~  134 (340)
T PF12416_consen   80 KRESIGYVVLDLRSAVVPQEK-------NQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDD  134 (340)
T ss_pred             cceeccEEEEEcccccccccc-------ccccCCCeeEccccccccccCCccEEEEEEEecc
Confidence            678999999999997   221       0112256776622      245678888776543

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=97.06  E-value=0.015  Score=35.88  Aligned_cols=85  Identities=12%  Similarity=0.173  Sum_probs=58.9

Q ss_pred             CCCCcEEEEEECCeEE-EeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346           31 SGSDPCVFVMMAKENI-KIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE  109 (159)
Q Consensus        31 ~~~dpy~~v~~~~~~~-~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~  109 (159)
                      |..+..+.+.++.... .|.-.. ..+..|++.|.+.+. .++.|.|+||-.|-   ..+.|...+.|++...+.     
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~-~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~---RslCav~~lrLEd~~~~~-----   76 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKP-KSNQAWDQSFTLELE-RSRELEIAVYWRDW---RSLCAVKFLKLEDERHEV-----   76 (98)
T ss_pred             cccceEEEEEEcCeEEeeccccc-cccccccceeEEEee-cccEEEEEEEEecc---hhhhhheeeEhhhhcccc-----
Confidence            4567778887775433 444333 358899999999998 68899999987763   257888888898833211     


Q ss_pred             CCceeeeEEeecCCCcccEEEEEEEE
Q 044346          110 PRNAVKDLDLKLTNIECGKLQVQLRY  135 (159)
Q Consensus       110 ~~~~~~~~~~~l~~~~~G~l~l~l~~  135 (159)
                              .+  .-.+.|.+...++|
T Consensus        77 --------~~--~lepqg~l~~ev~f   92 (98)
T cd08687          77 --------QL--DMEPQLCLVAELTF   92 (98)
T ss_pred             --------ee--ccccccEEEEEEEe
Confidence                    21  22678888888776

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.84  E-value=0.026  Score=38.65  Aligned_cols=87  Identities=21%  Similarity=0.342  Sum_probs=59.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH   81 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~   81 (159)
                      ...++|++..+.++....  .++.|+.+.+-  .+    ...|+.+.. .++.|||.+.|.+.-.    +..|.|+||+.
T Consensus         7 ~~~~~v~i~~~~~~~~~~--~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           7 NSNLRIKILCATYVNVND--IDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCCeEEEEEeeccCCCCC--cCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            456889999999887643  45778877543  22    223443443 5799999999987643    45899999986


Q ss_pred             cCCC----CCCccEEEEEeCccch
Q 044346           82 DSFT----KDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~----~d~~lG~~~i~l~~l~  101 (159)
                      ....    ....+|.+.++|-+..
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~  107 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYT  107 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCC
Confidence            5421    2246999999988744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.73  E-value=0.033  Score=38.72  Aligned_cols=89  Identities=13%  Similarity=0.211  Sum_probs=60.1

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEE--CCe----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMM--AKE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH   81 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~--~~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~   81 (159)
                      ...++|++..+.++...+ ...+.|+.+.+  +.+    ...|+......++.|+|.+.|.+.-.    +..|.|+||+.
T Consensus         7 ~~~f~i~i~~~~~~~~~~-~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           7 EEKFSITLHKISNLNAAE-RTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCCEEEEEEEeccCccCC-CCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            446889999999887622 23556666543  322    33555555456799999999986542    46899999986


Q ss_pred             cCCC----------------CCCccEEEEEeCccch
Q 044346           82 DSFT----------------KDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~----------------~d~~lG~~~i~l~~l~  101 (159)
                      ....                .+..||.+.++|-+..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~  121 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYK  121 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEccc
Confidence            5322                2358999999887744

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.69  E-value=0.0097  Score=47.87  Aligned_cols=98  Identities=16%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             EEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccC----CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEe
Q 044346           45 NIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDS----FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL  119 (159)
Q Consensus        45 ~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~----~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~  119 (159)
                      ..+|.++.+.+||.|.+.|.+..... .+.+.|.+++-+.    ....+|+|++.+.+.++........         .+
T Consensus        42 ~~rte~i~~~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~---------~l  112 (529)
T KOG1327|consen   42 VGRTEVIRNVLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG---------PL  112 (529)
T ss_pred             ccceeeeeccCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh---------hh
Confidence            44888999999999999988885554 5789999998554    3456799999999999887544421         11


Q ss_pred             ec---CCCcccEEEEEEEEEeCCCCCce-EEEEEeccc
Q 044346          120 KL---TNIECGKLQVQLRYCNLPGSKGF-IMFYECSSL  153 (159)
Q Consensus       120 ~l---~~~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l  153 (159)
                      .+   .+...|.|.+...-.  ...+.. ....+|.+|
T Consensus       113 ~~~~~~~~~~g~iti~aee~--~~~~~~~~~~~~~~~l  148 (529)
T KOG1327|consen  113 LLKPGKNAGSGTITISAEED--ESDNDVVQFSFRAKNL  148 (529)
T ss_pred             hcccCccCCcccEEEEeecc--cccCceeeeeeeeeec
Confidence            11   234566666666432  334444 666777777

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.64  E-value=0.013  Score=40.21  Aligned_cols=70  Identities=14%  Similarity=0.235  Sum_probs=51.1

Q ss_pred             CCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccCCCCCCccEEEEEeCccc
Q 044346           31 SGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDSFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        31 ~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l  100 (159)
                      ..++.|+.+.+-  ..    ...|+...-+..+.|||.+.|++...    +..|.|+||+....+....+|.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            356777777553  22    33555555566789999999987653    458999999987655667999999998874

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.57  E-value=0.022  Score=38.76  Aligned_cols=90  Identities=18%  Similarity=0.232  Sum_probs=59.2

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDH   81 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~   81 (159)
                      ...++|++....++........+.|+.+.+-  .+    ...|.......++.|||.+.|.+...    +..|.|+||+.
T Consensus         7 ~~~~~i~i~~~~~~~~~~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~   86 (156)
T cd08380           7 NFNLRIKIHGITNINLLDSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAV   86 (156)
T ss_pred             CCCeEEEEEeeccccccCCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEE
Confidence            3457788877777765233345566666543  22    22333333346799999999986542    56899999997


Q ss_pred             cCCC--CCCccEEEEEeCccch
Q 044346           82 DSFT--KDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~--~d~~lG~~~i~l~~l~  101 (159)
                      ...+  .+..+|.+.++|=+..
T Consensus        87 ~~~~~~~~~~iG~~~~~lFd~~  108 (156)
T cd08380          87 SEPGSKKEVPLGWVNVPLFDYK  108 (156)
T ss_pred             ecCCCCcceEEEEEeEEeEccc
Confidence            6543  4579999999988743

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=96.49  E-value=0.0066  Score=51.34  Aligned_cols=84  Identities=18%  Similarity=0.297  Sum_probs=64.4

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-------CeEEEeeccc-CCCCCccccE-EEEE-eeCCC-CcEEEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-------KENIKIRFIG-NNVNPEWNEV-FPFS-TTYPN-VPIMLSVCD   80 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-------~~~~~t~~~~-~~~~P~w~e~-~~~~-~~~~~-~~l~~~v~d   80 (159)
                      .+.+.|+|++|+-|..+..|   .||.|.+-       ...++|+++. ++.||+|+|+ |.|. +--++ ..|.|.||+
T Consensus       702 A~t~sV~VISgqFLSdrkvg---tyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  702 AATLSVTVISGQFLSDRKVG---TYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             EeeEEEEEEeeeeccccccC---ceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            45788999999999887733   68888764       3566788776 6999999964 6666 44344 589999999


Q ss_pred             ccCCCCCCccEEEEEeCccchh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      .+.    .++|+--++++.|..
T Consensus       779 Egg----K~ig~RIlpvd~l~~  796 (1189)
T KOG1265|consen  779 EGG----KFIGQRILPVDGLNA  796 (1189)
T ss_pred             cCC----ceeeeeccchhcccC
Confidence            774    599999999988665

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=96.47  E-value=0.057  Score=37.44  Aligned_cols=105  Identities=10%  Similarity=0.030  Sum_probs=68.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce----EEEeeccc----CCCCCccccEEEEEeeCC----CCcEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KE----NIKIRFIG----NNVNPEWNEVFPFSTTYP----NVPIM   75 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~----~~~t~~~~----~~~~P~w~e~~~~~~~~~----~~~l~   75 (159)
                      ....+.|+|..+.+++... ....+-|+.+.+-  .+    ...|+...    -...+.|||.+.|.+.-.    +..|.
T Consensus         6 v~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~   85 (171)
T cd04012           6 VTDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLV   85 (171)
T ss_pred             ccccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEE
Confidence            3456889999999998876 5567788887553  22    22333211    133577999998886542    56899


Q ss_pred             EEEEEccCCC---------CCCccEEEEEeCccchhhcccCCCCCceeeeEEe
Q 044346           76 LSVCDHDSFT---------KDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL  119 (159)
Q Consensus        76 ~~v~d~~~~~---------~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~  119 (159)
                      |++|+....+         .+..+|-+.++|=+...    .+..|.....+|.
T Consensus        86 itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~----~L~~G~~~L~lW~  134 (171)
T cd04012          86 LTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG----VLRQGSLLLGLWP  134 (171)
T ss_pred             EEEEEEecCCccccccccccceEEEEEeEeeEcchh----hhccCCEEEEecc
Confidence            9999866543         34689999999887443    2333544445554

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=96.18  E-value=0.014  Score=43.95  Aligned_cols=119  Identities=12%  Similarity=0.036  Sum_probs=73.3

Q ss_pred             cccceEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC
Q 044346            9 RTSLLSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF   84 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~   84 (159)
                      ....|.|.+++..+++|....   +-..+.||.+... ..+-+|.+......-.|.|.|...+. ....+.+-||.|++-
T Consensus        47 ~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv-~~~vl~~lvySW~pq  125 (442)
T KOG1452|consen   47 VSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVV-NIEVLHYLVYSWPPQ  125 (442)
T ss_pred             ecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeecc-cceeeeEEEeecCch
Confidence            345788999999999997543   4456789988776 33445555555666689999998877 356778888888876


Q ss_pred             CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEeC
Q 044346           85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNL  138 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~  138 (159)
                      .++++.=...+.+..+..     .++     +..+-+.-+++|.+.+.+.+-++
T Consensus       126 ~RHKLC~~g~l~~~~v~r-----qsp-----d~~~Al~lePrgq~~~r~~~~Dp  169 (442)
T KOG1452|consen  126 RRHKLCHLGLLEAFVVDR-----QSP-----DRVVALYLEPRGQPPLRLPLADP  169 (442)
T ss_pred             hhccccccchhhhhhhhh-----cCC-----cceeeeecccCCCCceecccCCh
Confidence            665543222222222111     111     11111223678888888776553

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=95.84  E-value=0.3  Score=32.45  Aligned_cols=121  Identities=20%  Similarity=0.246  Sum_probs=75.5

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe---EEEeeccc-CCCCCccccEEEEEeeC---C------CCcEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKE---NIKIRFIG-NNVNPEWNEVFPFSTTY---P------NVPIML   76 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~---~~~t~~~~-~~~~P~w~e~~~~~~~~---~------~~~l~~   76 (159)
                      ...-.+.+.+.+..+++.   .....|+....+..   ...|.... ....-.|++.|.+.++-   .      ...+.|
T Consensus         4 ~~kf~~~l~i~~l~~~p~---~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~   80 (143)
T PF10358_consen    4 AVKFQFDLTIHELENLPS---SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKF   80 (143)
T ss_pred             eeeEEEEEEEEEeECcCC---CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEE
Confidence            345567888889888877   22334555555533   23444333 35567999999887543   1      126889


Q ss_pred             EEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC--CCcccEEEEEEEEEeCCC
Q 044346           77 SVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT--NIECGKLQVQLRYCNLPG  140 (159)
Q Consensus        77 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~--~~~~G~l~l~l~~~~~~~  140 (159)
                      .|+....-++...+|.+.++|.++.....     ...  ...+.+.  ......|.+++++....+
T Consensus        81 ~v~~~~~~~~k~~lG~~~inLaey~~~~~-----~~~--~~~~~l~~~~~~~a~L~isi~~~~~~~  139 (143)
T PF10358_consen   81 SVFEVDGSGKKKVLGKVSINLAEYANEDE-----EPI--TVRLLLKKCKKSNATLSISISLSELRE  139 (143)
T ss_pred             EEEEecCCCccceEEEEEEEHHHhhCcCC-----CcE--EEEEeCccCCCCCcEEEEEEEEEECcc
Confidence            99887433333689999999999776321     011  2333343  356788999998876543

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.34  E-value=0.41  Score=33.49  Aligned_cols=88  Identities=9%  Similarity=0.032  Sum_probs=53.4

Q ss_pred             eEEEEEEEEeeCCCCCC-CCCCCcEEEEEE--CCe---EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346           13 LSLRLRIKQGVNLAIHD-HSGSDPCVFVMM--AKE---NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD   82 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~--~~~---~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~   82 (159)
                      ..++|+|..+.. +... ......|+.+.+  +..   ...|....-+.++.|||.+.|.+...    ...|.|+||+..
T Consensus        10 ~~friki~~~~~-~~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~   88 (178)
T cd08399          10 RKFRVKILGIDI-PVLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGK   88 (178)
T ss_pred             CCEEEEEEeecc-cCcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEe
Confidence            457778777753 3322 333345555533  222   22455555567799999998887653    458999999853


Q ss_pred             CCC----------------CCCccEEEEEeCccch
Q 044346           83 SFT----------------KDDRMKDAKIDIREYM  101 (159)
Q Consensus        83 ~~~----------------~d~~lG~~~i~l~~l~  101 (159)
                      ...                .+..||-+.+.|-+..
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~  123 (178)
T cd08399          89 APALSSKKSAESPSSESKGKHQLLYYVNLLLIDHR  123 (178)
T ss_pred             cCcccccccccccccccccccceEEEEEEEEEcCC
Confidence            211                1346777888777643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=94.56  E-value=0.82  Score=32.29  Aligned_cols=55  Identities=9%  Similarity=0.146  Sum_probs=40.4

Q ss_pred             EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCC-C-CCccEEEEEeCcc
Q 044346           45 NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFT-K-DDRMKDAKIDIRE   99 (159)
Q Consensus        45 ~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~-d~~lG~~~i~l~~   99 (159)
                      .++|.+...+.+|.|+|++.+.+...   ...|.|++++..... + ...+|.+-++|-+
T Consensus        54 e~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~  113 (189)
T cd08695          54 EYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR  113 (189)
T ss_pred             eEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence            56788888899999999999998764   457888777643221 1 2578988888743

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=94.11  E-value=0.75  Score=28.85  Aligned_cols=69  Identities=13%  Similarity=0.194  Sum_probs=44.7

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce----EEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEccC
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KE----NIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHDS   83 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~----~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~~   83 (159)
                      +.+.+....+..... ....+.|+.+.+-  .+    ...|+.+.-...+.|||.+.|.+.-.    +..|.|.+|+...
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~~   92 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVKN   92 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEeeC
Confidence            556666666666554 3334778887553  22    33455555456689999998886542    4589999998543

Outlier of C2 family.

>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function

Probab=93.64  E-value=0.83  Score=29.17  Aligned_cols=94  Identities=11%  Similarity=0.128  Sum_probs=46.2

Q ss_pred             EEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCC--------CCcEEEEEEEccCCCCCCccEEEEEeCccchhhccc
Q 044346           36 CVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYP--------NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKI  106 (159)
Q Consensus        36 y~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~--------~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~  106 (159)
                      ||.+.+- -+.+.|.++. +.+|.++.+-.+.+...        ...+.++++..-.. ..+.+|.+++++.++......
T Consensus         2 Fct~dFydfEtq~Tpvv~-G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~g~-d~~tla~~~i~l~~ll~~~~~   79 (107)
T PF11618_consen    2 FCTYDFYDFETQTTPVVR-GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQALGS-DFETLAAGQISLRPLLESNGE   79 (107)
T ss_dssp             EEEE-STT---EE---EE-SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE-SS--EEEEEEEEE--SHHHH--S-
T ss_pred             EEEEEeeceeeeccccee-CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeeccC-CeEEEEEEEeechhhhcCCCc
Confidence            4454444 3556666666 77999998888887753        34889999886633 357999999999998854331


Q ss_pred             CCCCCceeeeEE-eecCCCcccEEEEEEEEE
Q 044346          107 NLEPRNAVKDLD-LKLTNIECGKLQVQLRYC  136 (159)
Q Consensus       107 ~~~~~~~~~~~~-~~l~~~~~G~l~l~l~~~  136 (159)
                      ..     ..... ....++.-|.|...++..
T Consensus        80 ~i-----~~~~~l~g~~~~~~g~l~y~~rl~  105 (107)
T PF11618_consen   80 RI-----HGSATLVGVSGEDFGTLEYWIRLR  105 (107)
T ss_dssp             -E-----EEEEEE-BSSS-TSEEEEEEEEEE
T ss_pred             eE-----EEEEEEeccCCCeEEEEEEEEEec
Confidence            11     10111 123445778888877764

It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=93.42  E-value=0.53  Score=31.48  Aligned_cols=55  Identities=15%  Similarity=0.323  Sum_probs=40.0

Q ss_pred             EeecccCC-CCCccccEEEEEeeC----CCCcEEEEEEEccCCCCC----CccEEEEEeCccch
Q 044346           47 KIRFIGNN-VNPEWNEVFPFSTTY----PNVPIMLSVCDHDSFTKD----DRMKDAKIDIREYM  101 (159)
Q Consensus        47 ~t~~~~~~-~~P~w~e~~~~~~~~----~~~~l~~~v~d~~~~~~d----~~lG~~~i~l~~l~  101 (159)
                      .|.....+ ..+.|+|.+.|.+.-    .+..|.|+||........    ..||.+.++|=+..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~   86 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYR   86 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TT
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCC
Confidence            55555544 799999999998654    256899999997766554    68999999988753

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=93.31  E-value=2.1  Score=30.43  Aligned_cols=55  Identities=11%  Similarity=0.171  Sum_probs=40.3

Q ss_pred             eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC----CCCCccEEEEEeCc
Q 044346           44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF----TKDDRMKDAKIDIR   98 (159)
Q Consensus        44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~----~~d~~lG~~~i~l~   98 (159)
                      ..++|.+.....+|.|+|++.+.+...   ...|.|++++....    .....+|.+-++|-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            356777777888999999999998763   45888888764321    12247898888874

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=92.76  E-value=0.49  Score=33.10  Aligned_cols=55  Identities=11%  Similarity=0.128  Sum_probs=33.6

Q ss_pred             EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCCC-C--CCccEEEEEeCcc
Q 044346           45 NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFT-K--DDRMKDAKIDIRE   99 (159)
Q Consensus        45 ~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~-~--d~~lG~~~i~l~~   99 (159)
                      .+.|.+..++.+|.|+|++.+.+...   +..|-|++++-..-. +  +..+|.+.++|-+
T Consensus        60 ~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~  120 (184)
T PF14429_consen   60 SYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD  120 (184)
T ss_dssp             -EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred             EEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence            45666777888999999999998764   458889998854322 1  2699999999887

>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain

Probab=91.96  E-value=1.6  Score=30.12  Aligned_cols=69  Identities=12%  Similarity=0.137  Sum_probs=50.5

Q ss_pred             CCCcEEEEEECCe-EEEeecccC--CCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccch
Q 044346           32 GSDPCVFVMMAKE-NIKIRFIGN--NVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        32 ~~dpy~~v~~~~~-~~~t~~~~~--~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~  101 (159)
                      ...-|+++.++.+ ..+|....-  ...-.|++.|.+.+..--..|.++||.... ..+..|+.+.+++-...
T Consensus        36 ~~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~-~~~~~la~v~vpvP~~~  107 (168)
T PF15625_consen   36 KTRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSG-LSDRLLAEVFVPVPGST  107 (168)
T ss_pred             heeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccC-ccceEEEEEEeeCCCCc
Confidence            4456889988854 335544433  334567799999988767899999999887 57789999999866543

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=88.68  E-value=2.4  Score=29.52  Aligned_cols=52  Identities=10%  Similarity=0.141  Sum_probs=37.7

Q ss_pred             eecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC-----CCCCccEEEEEeCcc
Q 044346           48 IRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF-----TKDDRMKDAKIDIRE   99 (159)
Q Consensus        48 t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~-----~~d~~lG~~~i~l~~   99 (159)
                      ++++....+|.|++++.+.+...   ...|-|++++-..-     .....+|.+.++|-+
T Consensus        56 ~sv~~~~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          56 TSVVYYHKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             EEEEEcCCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            33444448999999999988653   45888999885422     335689999999876

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=88.03  E-value=0.24  Score=41.26  Aligned_cols=95  Identities=14%  Similarity=0.021  Sum_probs=57.8

Q ss_pred             CCCCcEEEEEEC-CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346           31 SGSDPCVFVMMA-KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE  109 (159)
Q Consensus        31 ~~~dpy~~v~~~-~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~  109 (159)
                      ...+||+.+.+. .+...+.+...+..|.|+++|...+. .+..+.+.++.......+.+...+.+..+++..   .   
T Consensus        26 ~al~~y~~v~vk~~~~~~~~~~~~~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~---~---   98 (694)
T KOG0694|consen   26 QALQPYLAVELKVKQGAENMTKVELRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKL---L---   98 (694)
T ss_pred             hhhhhhheeccceeecccccCCCCCCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHH---H---
Confidence            346788888776 33334455667999999999999966 577888889887655444444444444443332   0   


Q ss_pred             CCceeeeEEeecCCCcccEEEEEEEEE
Q 044346          110 PRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus       110 ~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                        ...++.|..+  .+.|.+...+.+.
T Consensus        99 --~~~~~~w~~~--~~~g~~~~~~~~~  121 (694)
T KOG0694|consen   99 --ALEQRLWVLI--EELGTLLKPAALT  121 (694)
T ss_pred             --hhhhhhcccc--ccccceeeeeccc
Confidence              1112445443  4456666666553

>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=86.54  E-value=3.6  Score=28.86  Aligned_cols=56  Identities=5%  Similarity=0.080  Sum_probs=40.6

Q ss_pred             eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC------CCCCccEEEEEeCcc
Q 044346           44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF------TKDDRMKDAKIDIRE   99 (159)
Q Consensus        44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~------~~d~~lG~~~i~l~~   99 (159)
                      ....|.+.-++.+|.|+|++.+.+...   ...|-|++++-+.-      .....+|.+-++|-+
T Consensus        54 ~~~~S~V~yHnk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~  118 (179)
T cd08696          54 TEAYTAVTYHNKSPDFYDEIKIKLPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR  118 (179)
T ss_pred             eeEEEEEEEeCCCCcccceEEEEcCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence            355777777889999999999887764   45888888873321      123469999888765

Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand

>PTZ00447 apical membrane antigen 1-like protein; Provisional

Probab=85.76  E-value=13  Score=28.96  Aligned_cols=94  Identities=13%  Similarity=0.067  Sum_probs=61.2

Q ss_pred             CCCcEEEEEECCeEEEeecccCCCCCccc--cEEEEEeeCCCCcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCC
Q 044346           32 GSDPCVFVMMAKENIKIRFIGNNVNPEWN--EVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE  109 (159)
Q Consensus        32 ~~dpy~~v~~~~~~~~t~~~~~~~~P~w~--e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~  109 (159)
                      ....|+.+..+....+|..+.-+..-+-+  +.....+..-+..|++.+|-..-. +..-+|.+.+.+..       .+-
T Consensus        73 ~khiyIef~~Gr~d~TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLv-kk~hIgdI~InIn~-------dII  144 (508)
T PTZ00447         73 YKHIYIIFSTDKYDFTTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLT-KKVHIGQIKIDINA-------SVI  144 (508)
T ss_pred             ceeEEEEEEcCceEEEccccccCcCceEEEeeeeeeeeeecCceEEEEEEecccc-ceeEEEEEEecccH-------HHH
Confidence            44568888888888888766544443333  333444554577999999987765 44788998888775       222


Q ss_pred             CCceeeeEEeecCC--CcccEEEEEE
Q 044346          110 PRNAVKDLDLKLTN--IECGKLQVQL  133 (159)
Q Consensus       110 ~~~~~~~~~~~l~~--~~~G~l~l~l  133 (159)
                      ++.++++.|+.+..  ...++|.+++
T Consensus       145 dk~FPKnkWy~c~kDGq~~cRIqLSF  170 (508)
T PTZ00447        145 SKSFPKNEWFVCFKDGQEICKVQMSF  170 (508)
T ss_pred             hccCCccceEEEecCCceeeeEEEEe
Confidence            34556688887732  4456666666

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=85.37  E-value=5  Score=28.29  Aligned_cols=56  Identities=9%  Similarity=0.111  Sum_probs=41.0

Q ss_pred             eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC---------CCCCccEEEEEeCcc
Q 044346           44 ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF---------TKDDRMKDAKIDIRE   99 (159)
Q Consensus        44 ~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~---------~~d~~lG~~~i~l~~   99 (159)
                      ....|.+..++.+|.|.|++-+.+...   ...|-|++++-+..         .....+|.+-++|-.
T Consensus        56 ~~~~s~V~yh~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          56 TSAYAAVLHHNQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             eEEEEEEEEcCCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            355777778889999999998887753   45888888875411         123468999998865

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		6e-04
1wfj_A	136	C2 Domain-Containing Protein From Putative Elicitor		7e-04

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 19  IKQGVNLAIHDHSG-SDPCV--FVMMAKEN-----IKIRFIGNNVNPEWNEVFPFSTTYP 70
           +  G++LA  D  G SDP V   + +A EN     ++ + I   +NP+WNE F F     
Sbjct: 27  VVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRVNPS 86
Query: 71  NVPIMLSVCDHDSFTKDD 88
           N  ++  V D +  T+DD
Sbjct: 87  NHRLLFEVFDENRLTRDD 104

>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor- Responsive Gene Length = 136

Iteration: 1
 Score = 39.7 bits (91), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 6/84 (7%)
Query: 52  GNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPR 111
           G    PEWNE F F+ +     +   + D D  T+DD + +A I +     +  I     
Sbjct: 51  GMGTTPEWNETFIFTVSEGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAY 110
Query: 112 NAVKDLDLKLTNIECGKLQVQLRY 135
           N VKD + K      G++ V L +
Sbjct: 111 NVVKDEEYK------GEIWVALSF 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	5e-23
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	2e-22
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	3e-22
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-21
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	4e-21
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	2e-19
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	1e-15
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	2e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	2e-14
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	5e-14
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	1e-13
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-12
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-08
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	7e-12
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	8e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	9e-11
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	7e-08
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	1e-10
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	2e-10
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	4e-10
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	7e-10
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	9e-10
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	4e-09
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-09
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	5e-09
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	7e-09
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	1e-08
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	1e-08
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	2e-08
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	2e-08
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	2e-08
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	5e-08
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	5e-08
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	4e-07
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	5e-07
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	8e-07
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	1e-06
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	3e-06
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	3e-06
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	4e-06

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 87.5 bits (217), Expect = 5e-23
 Identities = 25/126 (19%), Positives = 52/126 (41%), Gaps = 6/126 (4%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNV-- 72
           LR+ ++   N+        DP V V+   E  K + + N +NP WNE+  F      +  
Sbjct: 9   LRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDF 68

Query: 73  --PIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQ 130
              + + V D ++  ++  +  A + +++   D   +L P   +  L+ K        + 
Sbjct: 69  SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSL-PYKLISLLNEK-GQDTGATID 126

Query: 131 VQLRYC 136
           + + Y 
Sbjct: 127 LVIGYD 132

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 86.3 bits (214), Expect = 2e-22
 Identities = 30/124 (24%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFI-GNNVNPEWNEVFPFSTTYPNV 72
           L + +     L   D     DP V +    ++ K     G    PEWNE F F+ +    
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 73  PIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQ 132
            +   + D D  T+DD + +A I +     +  I     N VKD          G++ V 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKD------EEYKGEIWVA 125

Query: 133 LRYC 136
           L + 
Sbjct: 126 LSFK 129

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score = 85.4 bits (212), Expect = 3e-22
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 11/125 (8%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP 73
           L++++ +  +L   D SG SDP   + +  + ++   +  N+NPEWN+VF F     +  
Sbjct: 15  LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 74

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVK--INLEPRNAVKDLDLKLTNIECGKLQV 131
           + ++V D D     D +    I +            L+ +         L     G + +
Sbjct: 75  LEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNK--------DLEQAFKGVIYL 126

Query: 132 QLRYC 136
           ++   
Sbjct: 127 EMDLI 131

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 83.7 bits (207), Expect = 2e-21
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 11/132 (8%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDP-CVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFST 67
           +R+R+  G+ LA  D  G SDP     +    N  +     + I  ++NP+WNE   F  
Sbjct: 22  VRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRV 81

Query: 68  TYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDL---KLTNI 124
                 ++  V D +  T+DD +    + +     +      P    KD  L      + 
Sbjct: 82  HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERP-YTFKDFVLHPRSHKSR 140

Query: 125 ECGKLQVQLRYC 136
             G L++++ Y 
Sbjct: 141 VKGYLRLKMTYL 152

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 83.8 bits (207), Expect = 4e-21
 Identities = 31/132 (23%), Positives = 56/132 (42%), Gaps = 11/132 (8%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM------AKENIKIRFIGNNVNPEWNEVFPFST 67
           +R+++  G+ LA  D  G SDP V V +         +++ + I  ++NP+WNE   F  
Sbjct: 10  VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69

Query: 68  TYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLK---LTNI 124
                 I+  V D +  T+DD +    + +     +      P    KD  L      + 
Sbjct: 70  LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERP-YTFKDFVLHPRSHKSR 128

Query: 125 ECGKLQVQLRYC 136
             G L++++ Y 
Sbjct: 129 VKGYLRLKMTYL 140

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 79.5 bits (196), Expect = 2e-19
 Identities = 26/123 (21%), Positives = 43/123 (34%), Gaps = 7/123 (5%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP 73
           L++ +          +     P V V +  ++ K     N  +P+W +      T P   
Sbjct: 38  LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSK 96

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN---IECGKLQ 130
           +   V  H +   D  +  A +DI E +K   + LE    V  L L          G L 
Sbjct: 97  LHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLE--EVVVTLQLGGDKEPTETIGDLS 154

Query: 131 VQL 133
           + L
Sbjct: 155 ICL 157

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score = 68.7 bits (168), Expect = 1e-15
 Identities = 26/127 (20%), Positives = 48/127 (37%), Gaps = 6/127 (4%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP 73
           + + +     L   D +G SDP V V + K   + + I  N+NP W E F F     +  
Sbjct: 19  ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDR 78

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE--PRNAVKDLDLK---LTNIECGK 128
           I + V D D   K    +  K +  +++    I +           +L      +   G 
Sbjct: 79  IKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTLSGEMDVWYNLDKRTDKSAVSGA 138

Query: 129 LQVQLRY 135
           +++ +  
Sbjct: 139 IRLHISV 145

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score = 67.4 bits (165), Expect = 2e-15
 Identities = 19/131 (14%), Positives = 46/131 (35%), Gaps = 18/131 (13%)

Query: 15  LRLRIKQGVNLAIH---DHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFST 67
             + + +   +      D     DP V + +        + R   N++NP WNE F F  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 68  TYPNVPIM-LSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIEC 126
                 ++ +++ D + +  D+ +  A   +          ++     K++      +  
Sbjct: 65  DPNQENVLEITLMDAN-YVMDETLGTATFTVSS--------MKVGE-KKEVPFIFNQVTE 114

Query: 127 GKLQVQLRYCN 137
             L++ L   +
Sbjct: 115 MVLEMSLEVAS 125

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 68.8 bits (167), Expect = 2e-14
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 16  RLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--PNVP 73
            +   +  +L     + +D  + V    +  +   + NN NP W +   F         P
Sbjct: 397 VVSNFRAEHLWGDYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGP 456

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLE 109
           + + V D D    DD +            +V   L 
Sbjct: 457 LRVQVWDADYGWDDDLLGSCDRSPHSGFHEVTCELN 492

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score = 64.1 bits (156), Expect = 5e-14
 Identities = 21/117 (17%), Positives = 38/117 (32%), Gaps = 20/117 (17%)

Query: 14  SLRLRIKQGVNLAIHDHSG------------SDP-CVFVMMAKENIKIRFIGNNVNPEWN 60
            L+++I + V+L     S              DP     +      +        +P W+
Sbjct: 7   LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWH 66

Query: 61  EVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMK------DVKINLEPR 111
           + F          I L+V        DD + +  I   E ++      +  I+LEP 
Sbjct: 67  DEFVTDVCNGR-KIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEPE 122

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 62.8 bits (153), Expect = 1e-13
 Identities = 26/132 (19%), Positives = 46/132 (34%), Gaps = 18/132 (13%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDP--CVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPN 71
           +RL +    NLA  D     DP   + V  + +      + N ++P+WN+ +        
Sbjct: 7   IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVG-KT 65

Query: 72  VPIMLSVCDHDSFTKDDRMK---DAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIE--- 125
             I +SV +H    K          ++          I+       + LDL   N     
Sbjct: 66  DSITISVWNHKKIHKKQGAGFLGCVRLLSNA------ISRLKDTGYQRLDLCKLNPSDTD 119

Query: 126 --CGKLQVQLRY 135
              G++ V L+ 
Sbjct: 120 AVRGQIVVSLQT 131

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 62.2 bits (151), Expect = 2e-12
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 9/128 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L +RI Q ++L   D +G SDP V + +    K+  + +     +NP +NE F FS    
Sbjct: 22  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 81

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG 127
            +    +  SV D D F++ D +    +D    + +   +      + +   +    + G
Sbjct: 82  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSE--KADLG 139

Query: 128 KLQVQLRY 135
           +L   L Y
Sbjct: 140 ELNFSLCY 147

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 50.6 bits (121), Expect = 2e-08
 Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 9/83 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFSTT 68
           L + I +  NL   D +G SDP V   +  E  ++         N +NP +NE   F   
Sbjct: 154 LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 213

Query: 69  Y---PNVPIMLSVCDHDSFTKDD 88
                NV + ++V D+D    ++
Sbjct: 214 PESVENVGLSIAVVDYDCIGHNE 236

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score = 58.8 bits (142), Expect = 7e-12
 Identities = 21/118 (17%), Positives = 38/118 (32%), Gaps = 21/118 (17%)

Query: 14  SLRLRIKQGVNLAIHDHSG-----------SDP-CVFVMMAKENIKIRFIGNNVNPEWNE 61
            LR+RI + V L     S             DP     +      +         P +NE
Sbjct: 30  YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNE 89

Query: 62  VFPFSTTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMK--------DVKINLEPR 111
            F  + T     + L+V        D  + +  +  +E ++        +  ++LEP 
Sbjct: 90  EFCANVTDGGH-LELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEPE 146

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 57.5 bits (139), Expect = 9e-11
 Identities = 31/128 (24%), Positives = 51/128 (39%), Gaps = 10/128 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L + I Q   L   D  G SDP V V +    K+  + +     +NP +NE F F   Y 
Sbjct: 21  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 80

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG 127
            +    ++++V D D F+K D + + K+ +                  +   K    + G
Sbjct: 81  ELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAE---KEEQEKLG 137

Query: 128 KLQVQLRY 135
            +   LRY
Sbjct: 138 DICFSLRY 145

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 49.4 bits (118), Expect = 7e-08
 Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFSTT 68
           L + I +  NL   D  G SDP V + + +   ++         N +NP +NE F F   
Sbjct: 152 LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 211

Query: 69  Y---PNVPIMLSVCDHDSFTKDDRM 90
           +     V ++++V D+D   K+D +
Sbjct: 212 FEQIQKVQVVVTVLDYDKIGKNDAI 236

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 55.5 bits (134), Expect = 1e-10
 Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 8/98 (8%)

Query: 14  SLRLRIKQGVNLAIHDHSG-SDP--CVFVMMAKENI---KIRFIGNNVNPEWNEVFPFST 67
            L + ++   NL   D +G SDP   + ++   ++    K + I  ++NPEWNE F F  
Sbjct: 32  VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQL 91

Query: 68  TYP--NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
                +  + + + D D  +++D M      I E  K 
Sbjct: 92  KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 20/113 (17%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L ++I +   L   D SG SDP V + +    K  ++ +    N+NP WNE F     + 
Sbjct: 28  LTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETF----LFE 83

Query: 71  NVPIM--------LSVCDHDSFTKDDRMKDAKIDIREYMKDVKI----NLEPR 111
             P          L V D+D F+++D + +  I + +           +L+P 
Sbjct: 84  GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS 136

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 53.9 bits (130), Expect = 4e-10
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L + I Q   L   D  G SDP V V +    K+  + +     +NP +NE F F   Y 
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
            +    ++++V D D F+K D + + K+ +  
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 53.6 bits (129), Expect = 7e-10
 Identities = 20/97 (20%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 14  SLRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIRF----IGNNVNPEWNEVFPFS 66
              + I Q  NL+           +   V+   E+    F    +  +    +NEVF  S
Sbjct: 44  QFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVS 103

Query: 67  TTYPNVP---IMLSVCDHDSFTKDDRMKDAKIDIREY 100
            +YP +    + + VC  D    ++ +  A+I + E 
Sbjct: 104 MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 52.8 bits (127), Expect = 9e-10
 Identities = 25/113 (22%), Positives = 48/113 (42%), Gaps = 27/113 (23%)

Query: 14  SLRLRIKQGVNLAIHDHSG-SDP--------------CVFVMMAKENIKIRFIGNNVNPE 58
           +L + I Q  NL   D++G SDP               V    A+   + +++  ++NPE
Sbjct: 19  NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPE 78

Query: 59  WNEVFPFSTTYPNVP--------IMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
           WN+       Y ++         + ++V D+D F+ +D + +  ID+      
Sbjct: 79  WNQTV----IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHL 127

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 51.2 bits (123), Expect = 4e-09
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 8/84 (9%)

Query: 14  SLRLRIKQGVNLAIHDHSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTT 68
            L + +    NL      GSDP V + +          K       +NP +++ F FS +
Sbjct: 25  KLIVVVHACRNLIAFSEDGSDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVS 84

Query: 69  YPNVP---IMLSVCDHDSFTKDDR 89
            P V    + ++V +   F   D+
Sbjct: 85  LPEVQRRTLDVAVKNSGGFLSKDK 108

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 7/92 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L + I Q   L   D  G SDP V V +    K+  + +     +NP +NE F F   Y 
Sbjct: 44  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 103

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
            +    ++++V D D F+K D + + K+ +  
Sbjct: 104 ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 135

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 50.8 bits (122), Expect = 5e-09
 Identities = 22/85 (25%), Positives = 40/85 (47%), Gaps = 9/85 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIR---FIGNNVNPEWNEVFPFSTT 68
           + + I +  NL   D  G SDP V  ++M   + ++ +       N+NP +NE F F   
Sbjct: 18  IIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIP 77

Query: 69  Y---PNVPIMLSVCDHDSFTKDDRM 90
                   I+++V D D  +++D +
Sbjct: 78  TEKLRETTIIITVMDKDKLSRNDVI 102

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 50.9 bits (122), Expect = 7e-09
 Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 9/85 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIR---FIGNNVNPEWNEVFPFSTT 68
           L + I +  NL   D  G SDP V   +M   + +K +      N +NP +NE F F   
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 69  Y---PNVPIMLSVCDHDSFTKDDRM 90
           +     V ++++V D+D   K+D +
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAI 111

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 49.6 bits (119), Expect = 1e-08
 Identities = 20/94 (21%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 15  LRLRIKQGVNLAIHDHSG--SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFS--- 66
             + IK+   L   D     SDP + + +    K  +K R +   ++P ++E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 67  -TTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIRE 99
            T    + +  ++   D F++DD + +  I +  
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 21/99 (21%), Positives = 41/99 (41%), Gaps = 10/99 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFSTT 68
           L+  I +   L   D +G +DP V + +     K      + + N  NP WNE   +   
Sbjct: 31  LQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGI 90

Query: 69  YPNVP----IMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
                    + +SVCD D F  ++ + + +  +++   +
Sbjct: 91  TEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKAN 129

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 49.7 bits (119), Expect = 2e-08
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENI---KIRFIGNNVNPEWNEVFPFSTT 68
           L + I + V+LA  D +G SDP V  ++          K +     +NPE+NE F +   
Sbjct: 39  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 98

Query: 69  Y---PNVPIMLSVCDHDSFTKDDRM 90
           +       + +SV D+D    +D +
Sbjct: 99  HSDLAKKSLDISVWDYDIGKSNDYI 123

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 9/95 (9%)

Query: 14  SLRLRIKQGVNLAIHDHSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTT 68
           +L + +    +L   D +  +P V   +          K +      NP +NE+  +S  
Sbjct: 21  TLFIMVMHIKDLVTEDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGY 80

Query: 69  YPNVP----IMLSVCDHDSFTKDDRMKDAKIDIRE 99
                    + LSV   +S  ++  +    + +++
Sbjct: 81  SKETLRQRELQLSVLSAESLRENFFLGGITLPLKD 115

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 49.3 bits (118), Expect = 2e-08
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 9/85 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIR---FIGNNVNPEWNEVFPFS-- 66
           L + + +  +L   D SG SDP V   +  AK+ I  +         N  +NE+F F   
Sbjct: 32  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 91

Query: 67  -TTYPNVPIMLSVCDHDSFTKDDRM 90
             +   + +   V D +  ++++ +
Sbjct: 92  CESLEEISVEFLVLDSERGSRNEVI 116

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 48.5 bits (116), Expect = 5e-08
 Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 10/95 (10%)

Query: 15  LRLRIKQGVNLAIHDHSG--SDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFST 67
           L + +K+   LA  D +   S+P V   +      +   K     + VNP ++E   +  
Sbjct: 25  LVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEI 84

Query: 68  TYPNVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
               +    +  SV  H  F ++  + +A+I +  
Sbjct: 85  PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDS 119

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 48.1 bits (115), Expect = 5e-08
 Identities = 13/93 (13%), Positives = 30/93 (32%), Gaps = 11/93 (11%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTY 69
           L +   + V     +H G  D  V   +A        +       ++  W E        
Sbjct: 28  LFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAE 84

Query: 70  PNVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
             +P   + L++   D F++     + ++ +  
Sbjct: 85  EELPTATLTLTLRTCDRFSRHSVAGELRLGLDG 117

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 46.3 bits (110), Expect = 4e-07
 Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 8/93 (8%)

Query: 15  LRLRIKQGVNLAIHDHSG--SDP--CVFVMMAKENI---KIRFIGNNVNPEWNEVFPFST 67
           L + + +  +L     S     P   V+++     I   K R     ++P + +   F  
Sbjct: 32  LEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDE 91

Query: 68  TYPNVPIMLSV-CDHDSFTKDDRMKDAKIDIRE 99
           +     + + V  D+        M  A+I + E
Sbjct: 92  SPQGKVLQVIVWGDYGRMDHKCFMGVAQILLEE 124

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 45.8 bits (109), Expect = 5e-07
 Identities = 16/81 (19%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFSTTY 69
           L L I +G  L        DP V + +  E+ ++     + + +  +P ++E F F    
Sbjct: 29  LLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQE 88

Query: 70  PNVPIML--SVCDHDSFTKDD 88
            +    L  +V +  S ++  
Sbjct: 89  EDDQKRLLVTVWNRASQSRQS 109

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 45.1 bits (107), Expect = 8e-07
 Identities = 16/103 (15%), Positives = 36/103 (34%), Gaps = 14/103 (13%)

Query: 15  LRLRIKQGVNLAIHDHSG--------SDPCVFVMM---AKENIKIRFIGNNVNPEWNEVF 63
           L +R+ +  +L               S+P V + +    K + +         P + E +
Sbjct: 28  LTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERY 87

Query: 64  PFSTTYPNVP---IMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
            F   +       ++L+V D D F++   +    + + E    
Sbjct: 88  TFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLV 130

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 46.5 bits (109), Expect = 1e-06
 Identities = 16/97 (16%), Positives = 35/97 (36%), Gaps = 9/97 (9%)

Query: 15  LRLRIKQGVNLAIHDH----SGSDPCV--FVMMAKEN-IKIRFIGNNVNPEWNEVFPFST 67
             + + +   +            DP V  F+    ++  + R   N++NP WNE F F  
Sbjct: 20  FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79

Query: 68  TYPNVPIM-LSVCDHDSFTKDDRMKDAKIDIREYMKD 103
                 ++ +++ D +    D+ +  A   +      
Sbjct: 80  DPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVG 115

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 43.0 bits (102), Expect = 3e-06
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 20/105 (19%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIR---FIGNNVNPEWNEVFPFSTT 68
           L + I    +L   +     +P V  + +  + +   R    +   + P+WN+ F     
Sbjct: 20  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF----I 75

Query: 69  YPNVP--------IMLSVCDHDSFTKD--DRMKDAKIDIREYMKD 103
           Y  V         + +++ D     ++  + + +  I++   + D
Sbjct: 76  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 120

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 20/105 (19%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCV--FVMMAKENIKIR---FIGNNVNPEWNEVFPFSTT 68
           L + I    +L   +     +P V  + +  + +   R    +   + P+WN+ F     
Sbjct: 23  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTF----I 78

Query: 69  YPNVP--------IMLSVCDHDSFTKD--DRMKDAKIDIREYMKD 103
           Y  V         + +++ D     ++  + + +  I++   + D
Sbjct: 79  YSPVHRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 123

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 43.0 bits (101), Expect = 4e-06
 Identities = 11/88 (12%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           L + +K+       +    +  V + +         +  +  P W + F F     ++ +
Sbjct: 7   LCVGVKKAKFDGAQEKF--NTYVTLKVQNVKSTTIAVRGS-QPSWEQDFMFEINRLDLGL 63

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMK 102
            + V +      D  +    I +R   +
Sbjct: 64  TVEVWNKGLI-WDTMVGTVWIPLRTIRQ 90

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.92
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.92
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.92
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.92
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.92
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.91
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.9
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.9
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.89
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.89
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.88
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.88
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.87
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.85
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.84
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.83
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.83
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.83
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.83
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.83
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.82
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.82
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.82
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.82
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.82
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.81
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.81
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.81
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.81
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.81
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.81
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.8
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.8
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.79
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.79
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.78
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.78
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.77
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.76
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.75
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.67
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.66
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.65
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.59
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.58
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.49
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.48
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.47
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.34
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.33
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.29
2yrb_A	156	Protein fantom; beta sandwich, NPPSFA, national pr	95.7
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	93.85
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	93.69
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	93.63
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	93.38
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	93.26
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	92.98
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	91.99
1e7u_A	961	Phosphatidylinositol 3-kinase catalytic subunit; p	87.54
2y3a_A	1092	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	82.92

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.92  E-value=2.9e-24  Score=142.74  Aligned_cols=129  Identities=21%  Similarity=0.266  Sum_probs=110.3

Q ss_pred             ccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeeccc-CCCCCccccEEEEEeeCCCCcEEEEEEEccC
Q 044346            6 KGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYPNVPIMLSVCDHDS   83 (159)
Q Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~   83 (159)
                      .+...+.+.|+|+|++|++|+..+ .+.+||||.+.+....++|+++. ++.||.|+|.|.|.+......|.|+|||++.
T Consensus         3 ~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~~~~~l~~~V~d~~~   82 (136)
T 1wfj_A            3 SGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKDV   82 (136)
T ss_dssp             CCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSSS
T ss_pred             CCCCCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECCCCCEEEEEEEECCC
Confidence            345668899999999999999999 88999999999998889999998 8999999999999998777899999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec--CCCcccEEEEEEEEEeCCCCC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL--TNIECGKLQVQLRYCNLPGSK  142 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~G~l~l~l~~~~~~~~~  142 (159)
                      +++|++||++.++|.++......        ...|+.+  .....|+|+|+++|.+...+.
T Consensus        83 ~~~d~~lG~~~i~l~~l~~~~~~--------~~~w~~L~~~~~~~G~i~l~l~~~p~~~~~  135 (136)
T 1wfj_A           83 GTEDDAVGEATIPLEPVFVEGSI--------PPTAYNVVKDEEYKGEIWVALSFKPSGPSS  135 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEE--------EEEEEEEEETTEEEEEEEEEEEEEECCSCC
T ss_pred             CCCCceEEEEEEEHHHhccCCCC--------CcEEEEeecCCccCEEEEEEEEEEeCCCCC
Confidence            99999999999999998553321        1456554  346789999999999765443

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.92  E-value=3.6e-24  Score=145.46  Aligned_cols=123  Identities=19%  Similarity=0.186  Sum_probs=101.9

Q ss_pred             ccCcccceEEEEEEEEeeCCCCCC-C----------CCCCcEEEEEECCeE-EEeecccCCCCCccccEEEEEeeCCCCc
Q 044346            6 KGRRTSLLSLRLRIKQGVNLAIHD-H----------SGSDPCVFVMMAKEN-IKIRFIGNNVNPEWNEVFPFSTTYPNVP   73 (159)
Q Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~~-~----------~~~dpy~~v~~~~~~-~~t~~~~~~~~P~w~e~~~~~~~~~~~~   73 (159)
                      .++....|.|+|+|++|++|++++ .          +.+||||++.++... .+|+++.+|+||.|||+|.|.+.. ...
T Consensus        22 ~~~~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~-~~~  100 (157)
T 2fk9_A           22 SGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD-GGH  100 (157)
T ss_dssp             --CCCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECE
T ss_pred             chhccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC-CCE
Confidence            355677899999999999999887 3          568999999998655 699999999999999999999874 568


Q ss_pred             EEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           74 IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        74 l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      |.|+|||++.+++|++||.+.++|+++..+..    ++. ..+.|+++.  +.|+|+|+++|.
T Consensus       101 L~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~----~~~-~~~~W~~L~--~~G~i~l~l~~~  156 (157)
T 2fk9_A          101 LELAVFHETPLGYDHFVANCTLQFQELLRTTG----ASD-TFEGWVDLE--PEGKVFVVITLT  156 (157)
T ss_dssp             EEEEEEECCSSSSCEEEEEEEEEHHHHHHHHT----TCS-EEEEEEECB--SSCEEEEEEEEC
T ss_pred             EEEEEEECCCCCCCCEEEEEEEEHHHhhcccC----CCC-cccEEEECC--CCcEEEEEEEEE
Confidence            99999999999999999999999999876410    001 227899884  599999999873

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.92  E-value=5.4e-24  Score=141.02  Aligned_cols=123  Identities=19%  Similarity=0.296  Sum_probs=107.2

Q ss_pred             cccccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEc
Q 044346            3 VADKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDH   81 (159)
Q Consensus         3 ~~~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~   81 (159)
                      ....+.....+.|.|+|.+|++|+..+ .+.+||||.+.+....++|+++.++.||.|+|.|.|.+......|.|+|||+
T Consensus         3 ~~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~i~V~d~   82 (133)
T 2ep6_A            3 SGSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDE   82 (133)
T ss_dssp             SCCCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEE
T ss_pred             cccccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecCCCCEEEEEEEEC
Confidence            344566778999999999999999999 8899999999999999999999999999999999999987778999999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEE
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYC  136 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~  136 (159)
                      +.+++|++||++.+++.++..+.           ..|+.+.     ....|+|+|+++|+
T Consensus        83 d~~~~~~~lG~~~i~l~~l~~~~-----------~~w~~L~~~~~~~~~~G~i~l~i~~~  131 (133)
T 2ep6_A           83 DGDKPPDFLGKVAIPLLSIRDGQ-----------PNCYVLKNKDLEQAFKGVIYLEMDLI  131 (133)
T ss_dssp             ETTEEEEECCBCEEEGGGCCSSC-----------CEECCCBCSCTTSCCSSEEEEEEEEE
T ss_pred             CCCCCCCeeEEEEEEHHHccCCC-----------ceEEEeecCCCCCccceEEEEEEEEE
Confidence            99988999999999999975421           2455553     24789999999987

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=140.49  Aligned_cols=124  Identities=22%  Similarity=0.341  Sum_probs=104.5

Q ss_pred             cCcccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEEcc
Q 044346            7 GRRTSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCDHD   82 (159)
Q Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d~~   82 (159)
                      |.....+.|.|+|++|++|+..+.+.+||||++.+....++|+++.++.||.|||.|.|.+..+    ...|.|+|||++
T Consensus         1 g~s~~~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d   80 (140)
T 2dmh_A            1 GSSGSSGMLRVIVESASNIPKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFE   80 (140)
T ss_dssp             CCSCBCCEEEEEEEEEESCCCCSSSCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETT
T ss_pred             CCCCCCcEEEEEEEEeeCCCCCCCCCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECC
Confidence            3456788999999999999988777899999999998899999999999999999999998753    578999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEee---cCC----CcccEEEEEEEEEeCC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLK---LTN----IECGKLQVQLRYCNLP  139 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~---l~~----~~~G~l~l~l~~~~~~  139 (159)
                      .+++|++||++.++|.++......         +.|+.   +.+    ...|+|+|+++|.+.+
T Consensus        81 ~~~~~~~lG~~~i~l~~l~~~~~~---------~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~  135 (140)
T 2dmh_A           81 TIGQNKLIGTATVALKDLTGDQSR---------SLPYKLISLLNEKGQDTGATIDLVIGYDPPS  135 (140)
T ss_dssp             CSSSCCCCEEEEEEGGGTCSSSCE---------EEEEEEEEEECTTCCEEEEEEEEEEEECCCB
T ss_pred             CCCCCceEEEEEEEHHHhccCCCc---------eeEEeeeeccCCCCCCCCCEEEEEEEEECCC
Confidence            999999999999999997654332         44543   322    3569999999998654

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.92  E-value=2.1e-23  Score=140.55  Aligned_cols=119  Identities=24%  Similarity=0.348  Sum_probs=102.0

Q ss_pred             cCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC-
Q 044346            7 GRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF-   84 (159)
Q Consensus         7 ~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~-   84 (159)
                      |+....+.|.|+|++|++|+..+ .+.+||||.+.++...++|+++.++.||.|+|.|.|.+..+...|.|+|||++.. 
T Consensus        11 ~~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~~~~~l~~~v~d~d~~~   90 (148)
T 3kwu_A           11 GTSKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHNSSDRIKVRVLDEDDDI   90 (148)
T ss_dssp             ----CCEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECSTTCEEEEEEEECCCSH
T ss_pred             cccccccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecCCCCEEEEEEEECCCCc
Confidence            56677899999999999999999 8999999999999999999999999999999999999987788999999999986 


Q ss_pred             ----------CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEE
Q 044346           85 ----------TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYC  136 (159)
Q Consensus        85 ----------~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~  136 (159)
                                ++|++||++.++|.++..  .         .+.|+.+..     ...|+|+|+++|.
T Consensus        91 ~~~~~~~~~~~~~~~lG~~~i~l~~l~~--~---------~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           91 KSRVKQRFKRESDDFLGQTIIEVRTLSG--E---------MDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHHHHTTTSSCSSEEEEEEEEEGGGCCS--E---------EEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             cccccccccCCCCccEEEEEEEHHHCcC--C---------CCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                      789999999999999732  1         155776642     3679999999884

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.91  E-value=2.5e-23  Score=138.40  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=100.0

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCC-----------CCcEEEEEECCeE-EEeecccCCCCCccccEEEEEeeCCCCcEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSG-----------SDPCVFVMMAKEN-IKIRFIGNNVNPEWNEVFPFSTTYPNVPIML   76 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~-----------~dpy~~v~~~~~~-~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~   76 (159)
                      ...|.|.|+|++|++|++++ .+.           +||||++.++... .+|+++.++.||.|||.|.|.+... ..|.|
T Consensus         3 ~~~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~~-~~L~~   81 (136)
T 1gmi_A            3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCNG-RKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEEE-CEEEE
T ss_pred             ccceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecCC-CEEEE
Confidence            45789999999999999888 544           9999999998654 5888999999999999999998755 89999


Q ss_pred             EEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           77 SVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        77 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      +|||++.+++|++||.+.+++.++..++..       ..+.|+.+  .+.|+|+|+++|..
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~-------~~~~w~~L--~~~G~i~l~l~~~~  133 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSR-------HFEDWIDL--EPEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCS-------EEEEEEEC--BSSCEEEEEEEEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCC-------CccEEEEc--CCCeEEEEEEEEEe
Confidence            999999999999999999999997753221       12678877  45899999999974

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.90  E-value=9.2e-23  Score=138.06  Aligned_cols=127  Identities=23%  Similarity=0.361  Sum_probs=98.9

Q ss_pred             CcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEE
Q 044346            8 RRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK------ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCD   80 (159)
Q Consensus         8 ~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d   80 (159)
                      .....+.|+|+|++|++|+..+ .+.+||||++.+..      ..++|+++.++.||.|||.|.|.+......|.|+|||
T Consensus        15 ~~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~l~~~V~d   94 (153)
T 3b7y_A           15 DEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHPQQHRLLFEVFD   94 (153)
T ss_dssp             CCTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECTTTCEEEEEEEE
T ss_pred             CCCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecCCCCEEEEEEEE
Confidence            3556789999999999999999 88999999999872      5779999999999999999999998777899999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEEe
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYCN  137 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~~  137 (159)
                      ++.+++|++||++.++|.++....... .  ......|+.+..     ...|+|+|+++|+|
T Consensus        95 ~d~~~~d~~iG~~~i~l~~l~~~~~~~-~--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           95 ENRLTRDDFLGQVDVPLYPLPTENPRL-E--RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             CCSSSCCEEEEEEEEECCSCCBCCTTS-C--CCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             CCCCcCCCeeEEEEEEHHHcccCCCcc-c--ccccccccccccccCCCCcceEEEEEEEEeC
Confidence            999999999999999999987643210 0  001135666632     46799999999973

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.90  E-value=2.4e-22  Score=148.47  Aligned_cols=133  Identities=25%  Similarity=0.376  Sum_probs=114.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        17 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~~~~l~~~V~d~d~   96 (284)
T 2r83_A           17 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELAGKTLVMAVYDFDR   96 (284)
T ss_dssp             TTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhCcCEEEEEEEECCC
Confidence            5679999999999999999 8999999999985   4578999999999999999999998653   4689999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC------CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN------IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~------~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      +++|++||++.++|.++..+...         +.|+.+..      ...|+|.+.++|.  +..+.+ +.|++|+||.
T Consensus        97 ~~~~~~lG~~~i~l~~l~~~~~~---------~~w~~L~~~~~~~~~~~G~i~l~l~~~--p~~~~l~v~v~~a~~L~  163 (284)
T 2r83_A           97 FSKHDIIGEFKVPMNTVDFGHVT---------EEWRDLQSAEKEEQEKLGDICFSLRYV--PTAGKLTVVILEAKNLK  163 (284)
T ss_dssp             SSCCCEEEEEEEEGGGCCCSSCE---------EEEEECBCCSSCCCCCCCEEEEEEEEE--TTTTEEEEEEEEEESCC
T ss_pred             CCCCceeEEEEEcchhcccCCcc---------eeEEEeeccccccccccccEEEEEEec--CcCCceEEEEEEeECCC
Confidence            99999999999999997654322         56776632      3579999999998  667889 9999999995

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.89  E-value=3.4e-22  Score=138.31  Aligned_cols=127  Identities=23%  Similarity=0.355  Sum_probs=96.5

Q ss_pred             cccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEc
Q 044346            9 RTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK------ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDH   81 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~   81 (159)
                      ....+.|.|+|++|++|+.++ .+.+||||++.+..      ..++|+++.++.||.|+|.|.|.+......|.|+|||+
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~~~~L~~~V~d~   83 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLPQRHRILFEVFDE   83 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECTTTCEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcCCCCEEEEEEEEC
Confidence            456789999999999999999 89999999999873      67899999999999999999999987778999999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEEeC
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYCNL  138 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~~~  138 (159)
                      +.+++|++||++.++|.++....... +  ......|+.+..     ...|+|+|+++|.+.
T Consensus        84 d~~~~d~~lG~~~i~l~~l~~~~~~~-~--~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           84 NRLTRDDFLGQVDVPLYPLPTENPRM-E--RPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             C----CEEEEEEEEESCSCCBC---------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             CCCCCCcEEEEEEEEHHHccccCCcc-c--ccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            99999999999999999987642210 0  000024665532     458999999999854

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.89  E-value=2.1e-22  Score=132.03  Aligned_cols=114  Identities=17%  Similarity=0.306  Sum_probs=95.8

Q ss_pred             ceEEEEEEEEeeCCCCC---C-CCCCCcEEEEEECC---eEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIH---D-HSGSDPCVFVMMAK---ENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~---~-~~~~dpy~~v~~~~---~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~   83 (159)
                      .+.|.|+|++|++|+.+   + .+.+||||++.+..   ..++|+++.++.||.|||.|.|.+..+ ...|.|+|||++.
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~l~i~V~d~d~   81 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCCCCCEEEEEEEECCC
Confidence            57899999999999985   5 68999999999983   788999999999999999999998644 6789999999998


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEE
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRY  135 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~  135 (159)
                      + +|++||++.++|.++..+...         ..|+.+.+...|.|+++++.
T Consensus        82 ~-~~~~iG~~~i~l~~l~~~~~~---------~~~~~L~~~~~g~i~~~le~  123 (126)
T 1rlw_A           82 V-MDETLGTATFTVSSMKVGEKK---------EVPFIFNQVTEMVLEMSLEV  123 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEE---------EEEEEETTTEEEEEEEEEEC
T ss_pred             C-CCceeEEEEEEHHHccCCCcE---------EEEEEcCCCceEEEEEEEEe
Confidence            8 489999999999997654333         77888877666666666544

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=9.8e-22  Score=135.72  Aligned_cols=124  Identities=23%  Similarity=0.290  Sum_probs=100.8

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~   88 (159)
                      ...+.|.|+|++|++|+..+ .+.+||||++.++...++|+++.+++||.|||.|.|.+. +...|.|+|||++.+++|+
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~-~~~~L~~~V~D~d~~~~dd  111 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDV  111 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCE
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeC-CCCEEEEEEEECCCCCCCc
Confidence            35778999999999999444 556999999999999999999999999999999999986 5889999999999999999


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEEeC
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYCNL  138 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~~~  138 (159)
                      +||++.++|.++.........    ...+|+.+..     ...|+|.+.++|++.
T Consensus       112 ~lG~~~i~l~~l~~~~~~~~~----~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          112 LLGTAALDIYETLKSNNMKLE----EVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             EEEEEEEEHHHHHHHTTTEES----SEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             eEEEEEEEHHHhcccCCCCcc----eeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            999999999998764221110    0134555532     357999999999864

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.88  E-value=2.6e-21  Score=127.86  Aligned_cols=115  Identities=19%  Similarity=0.291  Sum_probs=93.2

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--CeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCC--
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTK--   86 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~--   86 (159)
                      ...|+|+|++|++|+.++ .+.+||||++.+.  ...++|+++.+++||.|+|.|.|.+.... .|.|+|||++.+++  
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~-~l~~~v~d~d~~~~~~   82 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKTD-SITISVWNHKKIHKKQ   82 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETTC-CEEEEEEEGGGTTSST
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCCC-EEEEEEEECCCCCCCC
Confidence            357999999999999999 8999999999997  47889999999999999999999988654 59999999999876  


Q ss_pred             -CCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-------CcccEEEEEEEE
Q 044346           87 -DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-------IECGKLQVQLRY  135 (159)
Q Consensus        87 -d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-------~~~G~l~l~l~~  135 (159)
                       |++||++.++++++......    +    ..|+.+..       ...|+|+|++++
T Consensus        83 ~d~~lG~~~i~l~~l~~~~~~----~----~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           83 GAGFLGCVRLLSNAISRLKDT----G----YQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             TTTEEEEEEECHHHHHHHTTS----C----CEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCceEEEEEeHHHhhccccc----C----cEEEeeeecCCCCCCceeEEEEEEEEc
Confidence             89999999999987442211    0    12333321       358999999875

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.87  E-value=4.4e-21  Score=142.73  Aligned_cols=135  Identities=25%  Similarity=0.380  Sum_probs=109.6

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      ...+.|.|+|++|++|+.++ .+.+||||++++   +...++|+++.++.||.|+|.|.|.+...   ...|.|+|||++
T Consensus        17 ~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~~V~d~d   96 (296)
T 1dqv_A           17 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   96 (296)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhcCCEEEEEEEEcC
Confidence            35678999999999999999 899999999998   46788999999999999999999998643   358999999999


Q ss_pred             CCCCCCccEEEEEe-CccchhhcccCCCCCceeeeEEeecC-----CCcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346           83 SFTKDDRMKDAKID-IREYMKDVKINLEPRNAVKDLDLKLT-----NIECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus        83 ~~~~d~~lG~~~i~-l~~l~~~~~~~~~~~~~~~~~~~~l~-----~~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      .+++|++||++.++ +.++......        ...|+.+.     ....|+|.+.++|.  +..+.+ +.|++|+||.
T Consensus        97 ~~~~~~~iG~~~i~~l~~~~~~~~~--------~~~w~~L~~~~~~~~~~G~i~vsl~y~--~~~~~l~v~v~~a~~L~  165 (296)
T 1dqv_A           97 RFSRHDLIGQVVLDNLLELAEQPPD--------RPLWRDILEGGSEKADLGELNFSLCYL--PTAGLLTVTIIKASNLK  165 (296)
T ss_dssp             SSSCCCEEEEEECCCTTGGGSSCSS--------CCCCEECBCCSSCCSCCCEEEEEEEEE--TTTTEEEEEEEEEESCC
T ss_pred             CCCCCceEEEEEeccccccccCCcc--------ceeeeccccccccccccceEEEEEEec--cccceeEEEEEEeecCC
Confidence            99999999999985 4443321100        03354442     24579999999998  667888 9999999994

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.85  E-value=9.3e-21  Score=125.66  Aligned_cols=105  Identities=15%  Similarity=0.189  Sum_probs=89.2

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEEeecccCCCCCccccEEEEE-eeC---CCCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFS-TTY---PNVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~~l~~~v~   79 (159)
                      ...+.|.|+|++|++|+. + .+.+||||++++     ....++|+++.+++||.|||.|.|. +..   ....|.|+||
T Consensus        17 ~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~~~L~~~V~   95 (134)
T 2b3r_A           17 YRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQRELQLSVL   95 (134)
T ss_dssp             EETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTTCEEEEEEE
T ss_pred             ecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCcCEEEEEEE
Confidence            346789999999999997 6 889999999998     3567899999999999999999999 664   3579999999


Q ss_pred             EccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCC
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNI  124 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~  124 (159)
                      |++.++++++||++.++|.++..+...         +.|+.+.+.
T Consensus        96 d~d~~~~~~~lG~~~i~l~~l~~~~~~---------~~W~~L~~~  131 (134)
T 2b3r_A           96 SAESLRENFFLGGITLPLKDFNLSKET---------VKWYQLTAA  131 (134)
T ss_dssp             ECCSSSCCEEEEEEEEEGGGSCTTSCE---------EEEEECBC-
T ss_pred             ECCCCCCCcEEEEEEEEhhhccCCCCc---------ceeEECCCc
Confidence            999999999999999999997653333         678887654

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=8.1e-21  Score=128.00  Aligned_cols=108  Identities=28%  Similarity=0.348  Sum_probs=92.5

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~   83 (159)
                      .+.|.|+|++|++|+..+ .+.+||||++.+.     ...++|+++.++.||.|+|+|.|.+...  ...|.|+|||++.
T Consensus        30 ~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~  109 (149)
T 1a25_A           30 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  109 (149)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccCCCEEEEEEEECCC
Confidence            568999999999999999 8899999999986     4678999999999999999999998764  4589999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEE
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKL  129 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l  129 (159)
                      ++++++||++.++|.++....          .+.|+.+.+...|++
T Consensus       110 ~~~~~~iG~~~i~l~~l~~~~----------~~~W~~L~~~~~g~~  145 (149)
T 1a25_A          110 TSRNDFMGSLSFGISELQKAG----------VDGWFKLLSQEEGEY  145 (149)
T ss_dssp             SSCCEEEEEEEEEHHHHTTCC----------EEEEEECBCHHHHTT
T ss_pred             CCCCCEEEEEEEEHHHhCcCc----------cCCeEEccCCCCCcc
Confidence            999999999999999976531          167888866555543

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=3.8e-20  Score=125.10  Aligned_cols=104  Identities=25%  Similarity=0.350  Sum_probs=89.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        40 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  119 (152)
T 1rsy_A           40 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  119 (152)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCCCEEEEEEEECCC
Confidence            4678999999999999999 8899999999984   5678999999999999999999987643   5789999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ++++++||++.++|.++..+...         +.|+.+.+
T Consensus       120 ~~~~~~iG~~~i~l~~l~~~~~~---------~~W~~L~~  150 (152)
T 1rsy_A          120 FSKHDIIGEFKVPMNTVDFGHVT---------EEWRDLQS  150 (152)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCE---------EEEEECBC
T ss_pred             CCCCcEEEEEEEEchhccCCCCc---------ceEEECCC
Confidence            99999999999999997543322         67887754

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.83  E-value=2e-20  Score=125.14  Aligned_cols=103  Identities=25%  Similarity=0.353  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+   ....++|+++.++.||.|+|.|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~d~  111 (143)
T 3f04_A           32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCCCEEEEEEEeCCC
Confidence            5678999999999999999 889999999998   35688999999999999999999997643   4789999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      +++|++||++.++|.++......         +.|+.+.
T Consensus       112 ~~~~~~iG~~~i~l~~l~~~~~~---------~~W~~L~  141 (143)
T 3f04_A          112 FSKHDIIGEFKVPMNTVDFGHVT---------EEWRDLQ  141 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCTTSCE---------EEEEECB
T ss_pred             CCCCceEEEEEEEHHHccCCCCc---------ceEEECc
Confidence            99999999999999997654333         6677764

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.83  E-value=6.2e-20  Score=122.53  Aligned_cols=104  Identities=24%  Similarity=0.369  Sum_probs=89.1

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEEcc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCDHD   82 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d~~   82 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+..    ....|.|+|||++
T Consensus        24 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d~d  103 (141)
T 2d8k_A           24 QESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVVQRILYLQVLDYD  103 (141)
T ss_dssp             SSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHTTSEEEEEEEECC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcccCEEEEEEEECC
Confidence            4678999999999999999 8899999999984   467899999999999999999998532    2578999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      .++++++||++.++|.++......         +.|+.+..
T Consensus       104 ~~~~~~~iG~~~i~l~~l~~~~~~---------~~W~~L~~  135 (141)
T 2d8k_A          104 RFSRNDPIGEVSIPLNKVDLTQMQ---------TFWKDLKP  135 (141)
T ss_dssp             SSSSCEEEEEEEEETTTSCTTSCE---------EEEECCEE
T ss_pred             CCCCCcEEEEEEEEhhhhcCCCCc---------cEEEECcC
Confidence            999999999999999997654322         67887743

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.83  E-value=2.1e-19  Score=142.34  Aligned_cols=122  Identities=19%  Similarity=0.293  Sum_probs=104.8

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccCCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDSFTKD   87 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~~~~d   87 (159)
                      ...+.|.|+|++|++|+..+ .+.+||||.+.++...++|+++.++.||.|+|.|.|.+... ...|.|+|||++.+++|
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~~~~~~l~~~v~d~d~~~~~  463 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLYQDVLCLTLFDRDQFSPD  463 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESCTTTCEEEEEEEECCSSSSC
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecCCCCCEEEEEEEeCCCCCCC
Confidence            35688999999999999999 89999999999999999999999999999999999998765 46799999999999999


Q ss_pred             CccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           88 DRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        88 ~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      ++||++.+++.++..+.....     ....|+.+.+...|+|+|++++.
T Consensus       464 d~lG~~~~~l~~l~~~~~~~~-----~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          464 DFLGRTEIPVAKIRTEQESKG-----PMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CEEEEEEEEHHHHHHHHHHHC-----SCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CceEEEEEEHHHhccccCCCC-----ceeeeecCCCCCCceEEEEEEEE
Confidence            999999999999887543110     01568888888899999998764

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.82  E-value=8.3e-20  Score=123.60  Aligned_cols=109  Identities=17%  Similarity=0.225  Sum_probs=89.8

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeC--CCCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTY--PNVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~   82 (159)
                      ...+.|.|+|++|++|+..+.+.+||||++.+.     ...++|+++.++.||.|||.|.|.+..  ....|.|+|||++
T Consensus        24 ~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d  103 (153)
T 3fbk_A           24 AQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEEDDQKRLLVTVWNRA  103 (153)
T ss_dssp             ESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGGGTTSEEEEEEEECC
T ss_pred             CCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccHHhCCEEEEEEEeCC
Confidence            346789999999999999887789999999983     457899999999999999999999843  3457999999999


Q ss_pred             CCCC-CCccEEEEEeCccchh-hcccCCCCCceeeeEEeecCCCccc
Q 044346           83 SFTK-DDRMKDAKIDIREYMK-DVKINLEPRNAVKDLDLKLTNIECG  127 (159)
Q Consensus        83 ~~~~-d~~lG~~~i~l~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~G  127 (159)
                      .+++ |++||++.++|.++.. ....         ..|+.+.+...|
T Consensus       104 ~~~~~d~~lG~~~i~l~~l~~~~~~~---------~~W~~L~~~~~g  141 (153)
T 3fbk_A          104 SQSRQSGLIGCMSFGVKSLLTPDKEI---------SGWYYLLGEHLG  141 (153)
T ss_dssp             SSGGGCEEEEEEEEEHHHHTC--CCE---------EEEEECBCTTGG
T ss_pred             CCCCCCcEEEEEEEEHHHhcCCCCcc---------ccEEECCChhhc
Confidence            9876 8999999999999764 2222         678888654443

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.82  E-value=8.8e-20  Score=121.88  Aligned_cols=94  Identities=21%  Similarity=0.422  Sum_probs=83.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|+++.++.||.|+|.|.|. +...   ...|.|+|||
T Consensus        27 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d  106 (142)
T 2chd_A           27 DNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEEDMQRKTLRISVCD  106 (142)
T ss_dssp             GGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHHHccCCEEEEEEEE
Confidence            5678999999999999999 88999999999863     68899999999999999999998 5432   3689999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhc
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDV  104 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~  104 (159)
                      ++.++++++||++.++|.++..+.
T Consensus       107 ~d~~~~d~~iG~~~i~l~~l~~~~  130 (142)
T 2chd_A          107 EDKFGHNEFIGETRFSLKKLKANQ  130 (142)
T ss_dssp             ECTTSCEEEEEEEEEEGGGCCTTC
T ss_pred             CCCCCCCcEEEEEEEEHHHcCCCC
Confidence            999999999999999999976543

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.82  E-value=9e-20  Score=122.72  Aligned_cols=104  Identities=24%  Similarity=0.359  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+..+  .+.+||||++.+.     ...++|+++.++.||.|||.|.|.+...   ...|.|+|||
T Consensus        21 ~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~L~~~V~d  100 (148)
T 3fdw_A           21 QTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPESLLAQRTLQFSVWH  100 (148)
T ss_dssp             TTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCSTTGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChhHhCceEEEEEEEE
Confidence            4678999999999999877  6889999999986     3478999999999999999999998764   3469999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ++.++++++||++.++|.++......         +.|+.+..
T Consensus       101 ~d~~~~~~~iG~~~i~l~~l~~~~~~---------~~W~~L~~  134 (148)
T 3fdw_A          101 HGRFGRNTFLGEAEIQMDSWKLDKKL---------DHCLPLHG  134 (148)
T ss_dssp             ECGGGCEEEEEEEEEEHHHHHHHCCS---------EEEEECBC
T ss_pred             CCCCcCCcEEEEEEEEcccccccCCc---------cceEECcC
Confidence            99999999999999999998765443         67887754

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.82  E-value=7.7e-20  Score=121.87  Aligned_cols=107  Identities=16%  Similarity=0.286  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEEeecccCCCCCccccEEEEEe-eCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFST-TYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~t~~~~~~~~P~w~e~~~~~~-~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+     ....++|+++.++.||.|||.|.|.+ ...   ...|.|+|||
T Consensus        19 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~~~~~l~i~V~d   98 (141)
T 1v27_A           19 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   98 (141)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTGGGTCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHHhcCCEEEEEEEE
Confidence            3578999999999999999 889999999998     35678999999999999999999994 322   4689999999


Q ss_pred             ccCCCC--CCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCccc
Q 044346           81 HDSFTK--DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG  127 (159)
Q Consensus        81 ~~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G  127 (159)
                      ++.+++  +++||++.++|.++..+.          ...|+.+.....|
T Consensus        99 ~d~~~~~~~~~lG~~~i~l~~l~~~~----------~~~W~~L~~~~~g  137 (141)
T 1v27_A           99 QARVREEESEFLGEILIELETALLDD----------EPHWYKLQTHDSG  137 (141)
T ss_dssp             BCSSSSCCBCCCEEEEEEGGGCCCSS----------EEEEEECBCCSSC
T ss_pred             CCCCcCCCCceEEEEEEEccccCCCC----------CCceEECcccccC
Confidence            999987  899999999999975421          2678888654443

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.82  E-value=1.4e-19  Score=118.86  Aligned_cols=92  Identities=14%  Similarity=0.295  Sum_probs=77.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~d   80 (159)
                      ..+.|.|+|.+|++|+.++ .+.+||||++.+     ....++|+++.++.||.|||.|.|.+..    ....|.|+|||
T Consensus        16 ~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~~~l~~~V~d   95 (129)
T 2bwq_A           16 VGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLWD   95 (129)
T ss_dssp             TTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHHhcCCeEEEEEEE
Confidence            4578999999999999999 889999999998     3678899999999999999999999532    24689999999


Q ss_pred             ccCCCC--CCccEEEEEeCccchh
Q 044346           81 HDSFTK--DDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~--d~~lG~~~i~l~~l~~  102 (159)
                      ++.+++  +++||++.++|.++..
T Consensus        96 ~d~~~~~~~~~lG~~~i~l~~l~~  119 (129)
T 2bwq_A           96 QARVREEESEFLGEILIELETALL  119 (129)
T ss_dssp             C-------CEEEEEEEEEGGGCCC
T ss_pred             CCcCcCcCCceeEEEEEEccccCC
Confidence            999987  8999999999999765

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.81  E-value=3.6e-20  Score=125.70  Aligned_cols=91  Identities=21%  Similarity=0.233  Sum_probs=82.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC------eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK------ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~------~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ..+.|.|.|++|++|+.++ .+.+||||++++..      .+++|+++++++||.|||+|.|.+...   ...|.|+|||
T Consensus        41 ~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~~l~~~~L~~~V~d  120 (155)
T 2z0u_A           41 KNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYPALHQKTLRVDVCT  120 (155)
T ss_dssp             TTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHHHHHHCEEEEEEEE
T ss_pred             CCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHHHhCcCEEEEEEEE
Confidence            4678999999999999999 89999999999863      278999999999999999999998753   4689999999


Q ss_pred             ccCCCCCCccEEEEEeCccch
Q 044346           81 HDSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~  101 (159)
                      ++.++++++||++.++|.++.
T Consensus       121 ~d~~~~~d~iG~~~i~l~~l~  141 (155)
T 2z0u_A          121 TDRSHLEECLGGAQISLAEVC  141 (155)
T ss_dssp             ECTTSCEEEEEEEEEECTTSC
T ss_pred             CCCCCCCcEEEEEEEEHHHcc
Confidence            999999999999999999974

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.81  E-value=9.7e-20  Score=125.47  Aligned_cols=104  Identities=17%  Similarity=0.136  Sum_probs=89.5

Q ss_pred             cceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEE-Ecc
Q 044346           11 SLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVC-DHD   82 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~-d~~   82 (159)
                      ..+.|.|+|++|++|+.++  .+.+||||++.+.  .   ..++|+++.++.||.|||+|.|.+......|.|+|| |++
T Consensus        28 ~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~L~~~V~~d~d  107 (171)
T 2q3x_A           28 KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESPQGKVLQVIVWGDYG  107 (171)
T ss_dssp             ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCCTTEEEEEEEEEECS
T ss_pred             CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecCCCCEEEEEEEEcCC
Confidence            4678999999999999988  4899999999986  2   377999999999999999999998766789999999 999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      .+++|++||++.++|.++......         +.|+.+..
T Consensus       108 ~~~~d~~iG~~~i~l~~l~~~~~~---------~~W~~L~~  139 (171)
T 2q3x_A          108 RMDHKCFMGVAQILLEELDLSSMV---------IGWYKLFP  139 (171)
T ss_dssp             TTCSSEEEEEEEECGGGSCTTSCE---------EEEEECBC
T ss_pred             CCCCCCEEEEEEEEHHHcccCCCc---------ceeEECCC
Confidence            999999999999999997653322         67888754

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.81  E-value=2.8e-20  Score=124.26  Aligned_cols=103  Identities=24%  Similarity=0.355  Sum_probs=87.9

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCe--------------EEEeecccCCCCCccccEEEEE-eeC---CCC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKE--------------NIKIRFIGNNVNPEWNEVFPFS-TTY---PNV   72 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~--------------~~~t~~~~~~~~P~w~e~~~~~-~~~---~~~   72 (159)
                      .+.|.|+|++|++|+.++ .+.+||||++.+...              .++|+++.++.||.|||.|.|. +..   ...
T Consensus        17 ~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~l~~~   96 (142)
T 1rh8_A           17 LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMKK   96 (142)
T ss_dssp             TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTTC
T ss_pred             CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEEEECCcCHHHccCC
Confidence            578999999999999999 899999999999842              4688899999999999999997 543   356


Q ss_pred             cEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           73 PIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        73 ~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      .|.|+|||++.++++++||++.++|.++......         +.|+.+.+
T Consensus        97 ~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~---------~~W~~L~~  138 (142)
T 1rh8_A           97 TLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT---------PRWYPLKE  138 (142)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC---------CEEEECBC
T ss_pred             EEEEEEEECCCCCCCceEEEEEEeccccccCCCC---------CeEEECCc
Confidence            8999999999999999999999999998653322         66887754

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=3.7e-19  Score=118.43  Aligned_cols=102  Identities=12%  Similarity=0.137  Sum_probs=84.6

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      ..+.|.|+|++|+   .++ .+.+||||++.+.    ...++|+++.+++||.|||.|.|.+...   ...|.|+|||++
T Consensus        24 ~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~~~~L~~~V~d~d  100 (138)
T 1wfm_A           24 QKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCD  100 (138)
T ss_dssp             TTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECC
T ss_pred             CCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcCCCEEEEEEEECC
Confidence            4678999999999   356 7899999999983    2367999999999999999999998754   458999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNI  124 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~  124 (159)
                      .+++|++||++.++|.++......         +.|+.+.+.
T Consensus       101 ~~~~dd~lG~~~i~l~~l~~~~~~---------~~W~~L~~~  133 (138)
T 1wfm_A          101 RFSRHSVAGELRLGLDGTSVPLGA---------AQWGELKTS  133 (138)
T ss_dssp             SSCTTSCSEEEEEESSSSSSCTTC---------CEEEECCCC
T ss_pred             CCCCCcEEEEEEEEcccccCcccc---------cceeeCcCC
Confidence            999999999999999997532222         668877653

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.81  E-value=5.5e-19  Score=116.42  Aligned_cols=120  Identities=14%  Similarity=0.228  Sum_probs=100.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCccccEEEEEeeCC---CCcEEEEEEEccCCCC
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSFTK   86 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~-~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~~~   86 (159)
                      ....|+|.+.+|.+|+.    .+|||+++.+.+.+++|+++. ++.||+|||.|.|.+..+   ++.|.++|+|++.+++
T Consensus        19 ~~msL~V~l~~a~~Lpg----~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~   94 (144)
T 3l9b_A           19 SHMALIVHLKTVSELRG----RADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFS   94 (144)
T ss_dssp             CCEEEEEEEEEEESCCS----CEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSC
T ss_pred             CcEEEEEEEEEecCCCC----CCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccC
Confidence            34578999999999974    899999999999999999998 699999999999998764   5799999999999999


Q ss_pred             CCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-CcccEEEEEEEEEeCCC
Q 044346           87 DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-IECGKLQVQLRYCNLPG  140 (159)
Q Consensus        87 d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-~~~G~l~l~l~~~~~~~  140 (159)
                      +++||++.++|.++..++.+.+.      +--.+..+ ...+.|.++++|.++++
T Consensus        95 nrlIG~~~i~Lq~lv~~~~l~l~------~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           95 NKLIGTFRMVLQKVVEENRVEVS------DTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             CEEEEEEEEESHHHHHHSEEEEE------EEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             CCEEEEEEEEhHHhccCCeEEEe------ecccCCCCCccccEEEEEEEecCCCC
Confidence            99999999999999998776432      21222222 34589999999998664

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.81  E-value=7e-19  Score=116.98  Aligned_cols=92  Identities=22%  Similarity=0.444  Sum_probs=82.1

Q ss_pred             cceEEEEEEEEeeCCCCCC-C-CCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-H-SGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~-~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+.++ . +.+||||++.+.   ...++|+++.++.||.|||.|.|. +...   ...|.|+|||+
T Consensus        20 ~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~~~~~~l~i~V~d~   99 (138)
T 1ugk_A           20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHHhccCEEEEEEEEC
Confidence            5678999999999999998 5 889999999985   478899999999999999999996 6543   35899999999


Q ss_pred             cCCCCCCccEEEEEeCccchh
Q 044346           82 DSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +.+++|++||++.++|.++..
T Consensus       100 d~~~~~~~lG~~~i~l~~l~~  120 (138)
T 1ugk_A          100 DRFSRDDIIGEVLIPLSGIEL  120 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCCC
T ss_pred             CCCCCCcEEEEEEEehhHccC
Confidence            999999999999999999765

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=3e-19  Score=119.96  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=80.7

Q ss_pred             cceEEEEEEEEeeCCCCC-C-------CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEE
Q 044346           11 SLLSLRLRIKQGVNLAIH-D-------HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIML   76 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~-~-------~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~   76 (159)
                      ..+.|.|+|++|++|+.. +       .+.+||||++.+.   ...++|+++.++.||.|||.|.|.+...   ...|.|
T Consensus        24 ~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~~  103 (147)
T 2enp_A           24 LHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTFEIPFLEAQRRTLLL  103 (147)
T ss_dssp             TTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEECCCHHHHHHSEEEE
T ss_pred             CCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEEEeChHHhccCEEEE
Confidence            467899999999999984 3       3579999999986   4578999999999999999999997653   358999


Q ss_pred             EEEEccCCCCCCccEEEEEeCccchhh
Q 044346           77 SVCDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        77 ~v~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      +|||++.++++++||++.++|.++...
T Consensus       104 ~V~d~d~~~~~~~iG~~~i~l~~l~~~  130 (147)
T 2enp_A          104 TVVDFDKFSRHCVIGKVSVPLCEVDLV  130 (147)
T ss_dssp             EEECCSTTCCSCCCEEEEEETTTSCTT
T ss_pred             EEEECCCCcCCcEEEEEEEechhcCCC
Confidence            999999999999999999999997653

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.80  E-value=4.6e-19  Score=118.39  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+.++ .+ +||||++.+.     ...++|+++.++.||.|||.|.|.+...   ...|.|+|||+
T Consensus        22 ~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  100 (142)
T 2dmg_A           22 QRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPEVQRRTLDVAVKNS  100 (142)
T ss_dssp             TTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHHHHHCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHHhCcCEEEEEEEEC
Confidence            3678999999999999999 78 9999999984     2678999999999999999999997642   35899999999


Q ss_pred             cCCCC--CCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           82 DSFTK--DDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        82 ~~~~~--d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      +.+++  +++||++.++|.++......         +.|+.+.+
T Consensus       101 d~~~~~~~~~iG~~~i~l~~~~~~~~~---------~~W~~L~~  135 (142)
T 2dmg_A          101 GGFLSKDKGLLGKVLVALASEELAKGW---------TQWYDLTE  135 (142)
T ss_dssp             CCSSCCSCCCCEEEEEECCCSTTTTCB---------CCBCCCBC
T ss_pred             CCccccCCcEEEEEEEecccccccccc---------cceeeccC
Confidence            98763  57999999999997653322         55776643

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.79  E-value=1.4e-18  Score=114.69  Aligned_cols=87  Identities=16%  Similarity=0.245  Sum_probs=73.9

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      .+.|.|+|.+|++++.  .+.+||||++. . +..+|+++. ++.||.|||.|.|.+......|.|+|||++ +++|++|
T Consensus         4 ~~~L~V~V~~A~~l~~--~g~~DPYv~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd~i   78 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-QNVKSTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDTMV   78 (131)
T ss_dssp             CEEEEEEEEEEECSSC--GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEEECCCSSEEEEEEEECC-SSCEEEE
T ss_pred             ceEEEEEEEEeECCCC--CCCcCeEEEEE-e-cCEEEeEecCCCCCceECCEEEEEEeCCCCeEEEEEEECC-CCCCCeE
Confidence            4789999999998853  57899999998 3 334555554 699999999999999877778999999999 8899999


Q ss_pred             EEEEEeCccchhh
Q 044346           91 KDAKIDIREYMKD  103 (159)
Q Consensus        91 G~~~i~l~~l~~~  103 (159)
                      |++.++|.++...
T Consensus        79 G~~~i~l~~l~~~   91 (131)
T 2cjt_A           79 GTVWIPLRTIRQS   91 (131)
T ss_dssp             EEEEEEGGGSCBC
T ss_pred             EEEEEEHHHhhhc
Confidence            9999999998653

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.79  E-value=6.5e-19  Score=119.83  Aligned_cols=91  Identities=25%  Similarity=0.345  Sum_probs=81.1

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+..+ .+.+||||++.+.  .   ..++|+++.++.||.|||.|.|.+...   ...|.|+|||+
T Consensus        23 ~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  102 (159)
T 1tjx_A           23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (159)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHHhCCcEEEEEEEEC
Confidence            4678999999999999999 8899999999986  1   467999999999999999999998754   35799999999


Q ss_pred             cCCCCCCccEEEEEeCccch
Q 044346           82 DSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~  101 (159)
                      +.+++|++||.+.+++..+.
T Consensus       103 d~~~~~~~iG~~~i~l~~~~  122 (159)
T 1tjx_A          103 DKIGKNDAIGKVFVGYNSTG  122 (159)
T ss_dssp             CSSSCCEEEEEEEEETTCCH
T ss_pred             CCCCCCceEEEEEECCCCCC
Confidence            99999999999999999753

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.78  E-value=1.2e-18  Score=115.54  Aligned_cols=93  Identities=27%  Similarity=0.340  Sum_probs=82.7

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCCC---CcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYPN---VPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~~---~~l~~~v~d   80 (159)
                      ...+.|.|+|++|++|+..+ .+.+||||++.+..     ..++|+++.++.||.|||.|.|.+....   ..|.|+|||
T Consensus        13 ~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l~~~~l~~~V~d   92 (138)
T 3n5a_A           13 PSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKLRETTIIITVMD   92 (138)
T ss_dssp             TTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGGGGEEEEEEEEE
T ss_pred             CCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhcCceEEEEEEEE
Confidence            35688999999999999999 88999999999862     4779999999999999999999987643   589999999


Q ss_pred             ccCCCCCCccEEEEEeCccchh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      ++.+++|++||++.+++.++..
T Consensus        93 ~~~~~~~~~lG~~~i~l~~~~~  114 (138)
T 3n5a_A           93 KDKLSRNDVIGKIYLSWKSGPG  114 (138)
T ss_dssp             CCSSSCCEEEEEEEESSSSCHH
T ss_pred             CCCCCCCcEEEEEEEccccCCh
Confidence            9999999999999999998654

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.78  E-value=1.9e-18  Score=118.35  Aligned_cols=92  Identities=25%  Similarity=0.285  Sum_probs=82.9

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+..     ..++|+++.+++||.|||.|.|.+...   ...|.|+|||+
T Consensus        35 ~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  114 (166)
T 2cm5_A           35 QQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWDY  114 (166)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHhcCCCEEEEEEEEC
Confidence            4678999999999999999 88999999999873     688999999999999999999998753   45899999999


Q ss_pred             cCCCCCCccEEEEEeCccchh
Q 044346           82 DSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +.++++++||++.+++.++..
T Consensus       115 d~~~~~~~iG~~~i~l~~~~~  135 (166)
T 2cm5_A          115 DIGKSNDYIGGCQLGISAKGE  135 (166)
T ss_dssp             CSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEeEEEecccCCc
Confidence            999999999999999998644

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.77  E-value=3.7e-18  Score=115.32  Aligned_cols=89  Identities=19%  Similarity=0.247  Sum_probs=75.4

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--Ce---EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--KE---NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~~---~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++.+.  ..   .++|+++.++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        28 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~v~V~d~  107 (153)
T 1w15_A           28 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS  107 (153)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHhCceEEEEEEEeC
Confidence            4578999999999999999 8899999999984  32   67999999999999999999998764   25899999999


Q ss_pred             cCCCCCCccEEEEEeCcc
Q 044346           82 DSFTKDDRMKDAKIDIRE   99 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~   99 (159)
                      +.++++++||++.+++..
T Consensus       108 d~~~~~~~lG~~~i~l~~  125 (153)
T 1w15_A          108 ERGSRNEVIGRLVLGATA  125 (153)
T ss_dssp             CTTSCCEEEEEEEESTTC
T ss_pred             CCCCCCcEEEEEEECCCC
Confidence            999999999999999988

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.76  E-value=1.7e-17  Score=113.73  Aligned_cols=89  Identities=16%  Similarity=0.225  Sum_probs=75.8

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeeccc-CCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~   88 (159)
                      .+.+.|.|+|++|++++.  .+.+||||++. . +..+|+++. ++.||.|||.|.|.+......|.|+|||++ +++|+
T Consensus        11 g~~~~L~V~V~~A~~l~~--~g~~DPYV~v~-~-~~~kt~~~~~~t~nP~WnE~f~f~v~~~~~~L~~~V~D~d-~~~dd   85 (167)
T 2cjs_A           11 GILSLLCVGVKKAKFDGA--QEKFNTYVTLK-V-QNVESTTIAVRGSQPSWEQDFMFEINRLDLGLTVEVWNKG-LIWDT   85 (167)
T ss_dssp             SCCCEEEEEEEEEECSSC--GGGCEEEEEEE-E-TTEEEECCCEESSSCEEEEEEEEECCCTTSEEEEEEEECC-SSCCE
T ss_pred             CceEEEEEEEEEEECCCC--CCCCCeEEEEE-e-cceEEEEecCCCCCCCCCCEEEEEeeCCCCEEEEEEEECC-CCCCc
Confidence            357899999999998843  67899999998 3 345666665 699999999999999877788999999999 88999


Q ss_pred             ccEEEEEeCccchhh
Q 044346           89 RMKDAKIDIREYMKD  103 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~  103 (159)
                      +||++.++|.++...
T Consensus        86 ~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           86 MVGTVWIPLRTIRQS  100 (167)
T ss_dssp             EEEEEEEEGGGSCBC
T ss_pred             eEEEEEEEHHHhccc
Confidence            999999999998653

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.75  E-value=2.1e-17  Score=131.28  Aligned_cols=111  Identities=20%  Similarity=0.295  Sum_probs=94.5

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeC--CCCcEEEEEEEccCCCCCC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTY--PNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~--~~~~l~~~v~d~~~~~~d~   88 (159)
                      .+.|.|+|++|++|+. + .+.+||||++.++...++|+++.+++||.|||.|.|.+..  ....|.|+|||+|.+++||
T Consensus       393 ~~~L~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD  471 (540)
T 3nsj_A          393 LAHLVVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDD  471 (540)
T ss_dssp             EEEEEEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCE
T ss_pred             ccEEEEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCC
Confidence            6789999999999998 8 8999999999999888999999999999999999998542  5789999999999999999


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEeCC
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCNLP  139 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~~~  139 (159)
                      +||.+.++|..           |.  .+.|+.+   ..|.|+++++..=.|
T Consensus       472 ~LG~~~~~L~~-----------g~--~~~~~~l---~~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          472 LLGSCDRSPHS-----------GF--HEVTCEL---NHGRVKFSYHAKCLP  506 (540)
T ss_dssp             EEEEEEECCCS-----------EE--EEEEEEC---SSSEEEEEEEEEECT
T ss_pred             EEEEEEEEeeC-----------Cc--EEEEEEc---CCeEEEEEEEEEECC
Confidence            99999999884           11  1456654   369999988765433

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.67  E-value=2.8e-16  Score=128.63  Aligned_cols=104  Identities=16%  Similarity=0.316  Sum_probs=90.4

Q ss_pred             ccceEEEEEEEEeeCCCC---CC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEc
Q 044346           10 TSLLSLRLRIKQGVNLAI---HD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDH   81 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~---~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~   81 (159)
                      .+.+.|.|+|++|++|+.   ++ .+.+||||++.+.   ..+++|+++.+++||+|||.|.|.+..+ ...|.|+|||+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~~~~~L~~~V~D~   94 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDA   94 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCBCEEEEEEC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCCCCCEEEEEEEEC
Confidence            457899999999999999   78 8899999999998   4688999999999999999999999874 67999999999


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      +.++ |++||++.++|.++..+...         +.|+.+..
T Consensus        95 D~~~-ddfIG~v~I~L~~L~~g~~~---------~~w~~L~~  126 (749)
T 1cjy_A           95 NYVM-DETLGTATFTVSSMKVGEKK---------EVPFIFNQ  126 (749)
T ss_dssp             CSSS-CEEEEEECCBSTTSCTTCCC---------CEEEEETT
T ss_pred             CCCC-CceeEEEEEEHHHcCCCCce---------EEEEecCC
Confidence            9998 99999999999997653322         56777754

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.66  E-value=1.8e-15  Score=122.41  Aligned_cols=114  Identities=27%  Similarity=0.345  Sum_probs=94.0

Q ss_pred             cceEEEEEEEEeeCCCCCC---CCCCCcEEEEEEC-----CeEEEeecccCC-CCCccccEEEEEeeCCC-CcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHD---HSGSDPCVFVMMA-----KENIKIRFIGNN-VNPEWNEVFPFSTTYPN-VPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~---~~~~dpy~~v~~~-----~~~~~t~~~~~~-~~P~w~e~~~~~~~~~~-~~l~~~v~d   80 (159)
                      ..+.|.|+|++|++|+..+   .+.+||||++.+.     ..+++|+++.++ .||.|||+|.|.+..++ ..|.|+|||
T Consensus       495 ~~~~L~V~Vi~A~~L~~~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~el~~L~~~V~D  574 (624)
T 1djx_A          495 RPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVED  574 (624)
T ss_dssp             CCEEEEEEEEEEESCCCCSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCGGGCEEEEEEEE
T ss_pred             cceEEEEEEEEcCCCCcccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecCCCCEEEEEEEE
Confidence            5678999999999999887   4789999999984     368899999986 99999999999988764 689999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC---C--cccEEEEEEEEE
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN---I--ECGKLQVQLRYC  136 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~---~--~~G~l~l~l~~~  136 (159)
                      ++.++++++||++.++|..+..+            ..|+++.+   .  ..|.|.|++++.
T Consensus       575 ~D~~~~dd~iG~~~ipl~~L~~G------------~r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          575 YDSSSKNDFIGQSTIPWNSLKQG------------YRHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             CCSSSCCEEEEEEEEEGGGBCCE------------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCCceeEEEEEEHHHcCCC------------cEEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99999999999999999997652            22333322   2  357888888875

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.65  E-value=1.1e-15  Score=112.61  Aligned_cols=92  Identities=25%  Similarity=0.340  Sum_probs=80.7

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--C---eEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--K---ENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--~---~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|.|++|++|+.++ .+.+||||++.+.  .   ..++|+++.++.||.|||.|.|.+...   ...|.|+|||+
T Consensus       148 ~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~l~i~V~d~  227 (284)
T 2r83_A          148 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  227 (284)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTGGGEEEEEEEEEC
T ss_pred             cCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHhCceEEEEEEEeC
Confidence            3568999999999999999 8899999999984  2   467899999999999999999998765   34799999999


Q ss_pred             cCCCCCCccEEEEEeCccchh
Q 044346           82 DSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +.++++++||++.+++..+..
T Consensus       228 d~~~~~~~iG~~~i~l~~~~~  248 (284)
T 2r83_A          228 DKIGKNDAIGKVFVGYNSTGA  248 (284)
T ss_dssp             CSSSCCCEEEEEEEETTCCHH
T ss_pred             CCCCCCcEEEEEEECCCCCCc
Confidence            999999999999999987543

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.59  E-value=1.3e-16  Score=125.82  Aligned_cols=90  Identities=12%  Similarity=0.067  Sum_probs=9.8

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEECCe-EEEeecccCC---CCCccccEEEEEeeCCCCcEEEEEEEc-c--
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKE-NIKIRFIGNN---VNPEWNEVFPFSTTYPNVPIMLSVCDH-D--   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~-~~~t~~~~~~---~~P~w~e~~~~~~~~~~~~l~~~v~d~-~--   82 (159)
                      ...+.|+|+|++|++|+.++    ||||.+.++.. ..+|+++.++   .||.|||+|.|.+......|.++|||+ +  
T Consensus         8 r~~~~L~V~VieAk~L~~~d----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~~~~L~v~V~d~~d~~   83 (483)
T 3bxj_A            8 RVDNVLKLWIIEARELPPKK----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPAVRALRLHLYRDSDKK   83 (483)
T ss_dssp             EEEECC-------------------------------------------------CCEECC-------------------
T ss_pred             eeccEEEEEEEEcCCcCCCC----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCCccEEEEEEEecCCcc
Confidence            34678999999999998865    89999998854 5689999998   999999999999655568899999994 4  


Q ss_pred             -CCCCCCccEEEEEeCccchhh
Q 044346           83 -SFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        83 -~~~~d~~lG~~~i~l~~l~~~  103 (159)
                       ..++|++||.+.++++++..+
T Consensus        84 ~~~~~d~~lG~v~i~l~~l~~~  105 (483)
T 3bxj_A           84 RKKDKAGYVGLVTVPVATLAGR  105 (483)
T ss_dssp             ----------------------
T ss_pred             ccCCCCceEEEEEEEHHHhcCC
Confidence             367899999999999998764

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.58  E-value=7.3e-16  Score=114.50  Aligned_cols=92  Identities=23%  Similarity=0.274  Sum_probs=81.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|.|++|++|+.++ .+.+||||++++.     ..+++|+++.++.||.|||.|.|.+...   ...|.|+|||+
T Consensus       150 ~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~~~L~i~V~d~  229 (296)
T 1dqv_A          150 TAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVDY  229 (296)
T ss_dssp             TTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEEC
T ss_pred             ccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHHccCcEEEEEEEeC
Confidence            3578999999999999999 8889999999985     2577999999999999999999998754   34799999999


Q ss_pred             cCCCCCCccEEEEEeCccchh
Q 044346           82 DSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      +.++++++||.+.+++..+..
T Consensus       230 d~~~~~~~iG~~~i~l~~~~~  250 (296)
T 1dqv_A          230 DCIGHNEVIGVCRVGPEAADP  250 (296)
T ss_dssp             CSSSCCEEEEECCCSSCTTCH
T ss_pred             CCCCCCceEEEEEECCccCCc
Confidence            999999999999999998643

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.49  E-value=1e-13  Score=113.37  Aligned_cols=92  Identities=27%  Similarity=0.405  Sum_probs=82.5

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~   83 (159)
                      .+.|.|.+.+|++|+.++ .+.+|||+++.+     ...+++|+++.+++||.|||.|.|.+...  ...|.++|||++.
T Consensus       171 ~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~~~L~v~v~d~d~  250 (674)
T 3pfq_A          171 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL  250 (674)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTTCEEEEEEEECCS
T ss_pred             cceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCccceeeeEEeeccc
Confidence            467999999999999999 999999999998     35678999999999999999999998754  4579999999999


Q ss_pred             CCCCCccEEEEEeCccchhh
Q 044346           84 FTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~  103 (159)
                      +++|++||.+.+++.++...
T Consensus       251 ~~~dd~iG~~~i~l~~l~~~  270 (674)
T 3pfq_A          251 TSRNDFMGSLSFGISELQKA  270 (674)
T ss_dssp             SSCCEECCBCCCBTTHHHHC
T ss_pred             ccccccccccccchhhhccC
Confidence            99999999999999988753

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.48  E-value=1.2e-12  Score=84.99  Aligned_cols=120  Identities=14%  Similarity=0.216  Sum_probs=91.4

Q ss_pred             ccCcccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEECCe----EEEe-ecccCCCCCccccEEEEEeeCCCCcEEEEE
Q 044346            6 KGRRTSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMAKE----NIKI-RFIGNNVNPEWNEVFPFSTTYPNVPIMLSV   78 (159)
Q Consensus         6 ~~~~~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~~~----~~~t-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v   78 (159)
                      .|.....+.|+|.+.+..--+.+.  ....||||.+.+...    ..+| ....+|..|.|+++|...+. ..+.|.+.|
T Consensus         3 ~~~~~m~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~-~Gr~l~i~V   81 (138)
T 2enj_A            3 SGSSGMSPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHIN-KGRVMQIIV   81 (138)
T ss_dssp             CCCSSCCCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCC-SSCEEEEEE
T ss_pred             CcccccCcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEE-CCeEEEEEE
Confidence            567777888999988776544332  456899999988722    2455 55567999999999999888 689999999


Q ss_pred             EEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           79 CDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        79 ~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      |+...    +|++.+++++++|.....-.  .+  ..++|++|  ++.|+|++.++|.
T Consensus        82 fh~a~----~fVAn~tV~~edL~~~ck~~--~g--~~e~WvdL--eP~Gkl~v~i~~~  129 (138)
T 2enj_A           82 KGKNV----DLISETTVELYSLAERCRKN--NG--KTEIWLEL--KPQGRMLMNARYF  129 (138)
T ss_dssp             ECSSC----SCCEEEEEESHHHHHHHHHT--TT--CEEEEEEC--BSSCEEEEEEEEC
T ss_pred             EcCCC----CeeeEEEEEHHHHHhhhccC--CC--ceEEEEec--ccCcEEEEEEEEE
Confidence            95543    89999999999998652110  11  12889988  6799999999986

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.47  E-value=4.4e-12  Score=81.31  Aligned_cols=115  Identities=15%  Similarity=0.169  Sum_probs=85.9

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeE----EEe-ecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKEN----IKI-RFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSF   84 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~----~~t-~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~   84 (159)
                      ....|+|.+.+..--+.+. ....||||.+.+....    .+| ....+|..|.|+++|...+. ..+.|.+.||+... 
T Consensus         4 m~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~-~Gr~l~i~Vfh~a~-   81 (126)
T 1yrk_A            4 MAPFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIY-EGRVIQIVLMRAAE-   81 (126)
T ss_dssp             CCCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECC-TTCEEEEEEEEETT-
T ss_pred             cCccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeee-CCEEEEEEEEcCCC-
Confidence            3456888887665433333 4568999999887222    244 56667999999999999988 68999999996554 


Q ss_pred             CCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           85 TKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        85 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                         +|++.+++++++|.....-.  ++  ..++|++|  .+.|+|++.++|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~--~g--~~e~WvdL--eP~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKN--NG--KAEFWLDL--QPQAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTT--TT--EEEEEEEC--BSSCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccC--CC--ceEEEEec--ccCcEEEEEEEEe
Confidence               89999999999998652110  11  22889988  6799999999986

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.34  E-value=1.8e-11  Score=101.22  Aligned_cols=109  Identities=15%  Similarity=0.213  Sum_probs=85.3

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC-------eEEEeecccC-CCCCccccE-EEEE-eeCCC-CcEEEEEEE
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK-------ENIKIRFIGN-NVNPEWNEV-FPFS-TTYPN-VPIMLSVCD   80 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~-------~~~~t~~~~~-~~~P~w~e~-~~~~-~~~~~-~~l~~~v~d   80 (159)
                      .+.|.|+|++|++|+..   .+||||.+.+.+       .+++|+++.+ +.||+|||+ |.|. +..++ ..|.|.|||
T Consensus       649 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pela~Lrf~V~D  725 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK---QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAVVRIIVSE  725 (816)
T ss_dssp             CEEEEEEEEEEECCCSS---CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGGGCEEEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC---CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCCccEEEEEEEe
Confidence            47899999999999863   589999999863       5779999885 799999998 9998 76554 589999999


Q ss_pred             ccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC-----CcccEEEEEEEEEeCC
Q 044346           81 HDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN-----IECGKLQVQLRYCNLP  139 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~-----~~~G~l~l~l~~~~~~  139 (159)
                      ++    ++++|++.++|..|..+            ..+++|.+     -..+.|.+++.+.++.
T Consensus       726 ~d----ddfiG~~~ipL~~L~~G------------yR~vpL~~~~g~~~~~atLfv~i~~~~~~  773 (816)
T 3qr0_A          726 EN----GKFIGHRVMPLDGIKPG------------YRHVPLRNESNRPLGLASVFAHIVAKDYV  773 (816)
T ss_dssp             TT----SCEEEEEEEESTTCCCE------------EEEEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred             cC----CCeeeEEEEEHHHcCCc------------ceEEEEeCCCCCCCCceEEEEEEEEEecC
Confidence            85    68999999999997652            12222221     2347899999887654

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.33  E-value=1.5e-11  Score=102.41  Aligned_cols=111  Identities=16%  Similarity=0.212  Sum_probs=84.7

Q ss_pred             ceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC------eEEEeecccC-CCCCcccc-EEEEE-eeCCC-CcEEEEEEEc
Q 044346           12 LLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK------ENIKIRFIGN-NVNPEWNE-VFPFS-TTYPN-VPIMLSVCDH   81 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~------~~~~t~~~~~-~~~P~w~e-~~~~~-~~~~~-~~l~~~v~d~   81 (159)
                      ...|.|+|++|++|+..   .+||||++.+.+      .+++|+++.+ +.||+||| .|.|. +..++ ..|.|+|||+
T Consensus       724 ~~~L~V~Visaq~L~~~---~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~  800 (885)
T 3ohm_B          724 ANALRVKVISGQFLSDR---KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEE  800 (885)
T ss_dssp             CEEEEEEEEEEESCCSS---CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEET
T ss_pred             ceEEEEEEEEeccCccc---CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcC
Confidence            34799999999999863   589999999852      3578998875 69999999 69998 65553 5799999998


Q ss_pred             cCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC-C--CcccEEEEEEEEEeCC
Q 044346           82 DSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT-N--IECGKLQVQLRYCNLP  139 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~-~--~~~G~l~l~l~~~~~~  139 (159)
                      +    +++||++.++|..|..+-.          .+.|... +  -..|.|.|.+.+.++.
T Consensus       801 d----ddfiG~~~lpL~~L~~GyR----------~vpL~~~~g~~l~~atLfv~i~~~~~~  847 (885)
T 3ohm_B          801 G----GKFVGHRILPVSAIRSGYH----------YVCLRNEANQPLCLPALLIYTEASDYI  847 (885)
T ss_dssp             T----TEEEEEEEEETTTCCCEEE----------EEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred             C----ccEEeeEEEEHHHcCCCce----------EEEecCCCCCccCceEEEEEEEEEecC
Confidence            7    6899999999999765211          1222222 1  2468999999998754

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.29  E-value=4.2e-11  Score=99.24  Aligned_cols=85  Identities=19%  Similarity=0.300  Sum_probs=70.8

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEECC------eEEEee-ccc-CCCCCcccc-EEEE-EeeCCC-CcEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMAK------ENIKIR-FIG-NNVNPEWNE-VFPF-STTYPN-VPIMLSVC   79 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~------~~~~t~-~~~-~~~~P~w~e-~~~~-~~~~~~-~~l~~~v~   79 (159)
                      ..+.|.|+|++|++|+.   +.+||||++.+.+      .+++|+ ++. ++.||+||| .|.| .+..++ ..|.|.||
T Consensus       676 ~~~~L~V~Visa~~L~~---~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el~~Lr~~V~  752 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE---RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVM  752 (799)
T ss_dssp             TCEEEEEEEEEEESCCS---SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEE
T ss_pred             eeeeEEEEEEeccccCc---cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCCccEEEEEEE
Confidence            35789999999999986   4689999999841      367898 776 479999999 6999 776554 48999999


Q ss_pred             EccCCCCCCccEEEEEeCccchh
Q 044346           80 DHDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        80 d~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      |++    ++++|++.++|..|..
T Consensus       753 D~d----~d~iG~~~ipl~~L~~  771 (799)
T 2zkm_X          753 EEG----NKFLGHRIIPINALNS  771 (799)
T ss_dssp             ETT----TEEEEEEEEEGGGBCC
T ss_pred             EeC----CCccceEeeehhhcCC
Confidence            987    6899999999999764

>2yrb_A Protein fantom; beta sandwich, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=95.70  E-value=0.22  Score=33.06  Aligned_cols=123  Identities=13%  Similarity=0.113  Sum_probs=79.3

Q ss_pred             cccceEEEEEEEEeeCCCCCC--CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC--------CCcEE
Q 044346            9 RTSLLSLRLRIKQGVNLAIHD--HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP--------NVPIM   75 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~~--~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~--------~~~l~   75 (159)
                      ....+.+.|+|.++.--+..-  .+..+|.....+.   -+.+.|.+.. +.+|.+|.+-.+.+...        ...+.
T Consensus        14 ~~gEnlfEihi~~~~~~~~~l~~~~d~~p~tF~t~dF~dfEtq~Tpv~~-G~~p~y~fts~Y~V~~d~~fl~yL~~~~l~   92 (156)
T 2yrb_A           14 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTTPVVR-GLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   92 (156)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEECCCEE-SSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeEEEEcHHHHhhccccCCcEEEEEEEeceEeeeccccc-CCCCCcceEEEEEEEeCHHHHHHHhcCCEE
Confidence            445778999998876322111  2345675555554   4566666666 77999999888887643        23788


Q ss_pred             EEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEee-cCC--CcccEEEEEEEEEeCC
Q 044346           76 LSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLK-LTN--IECGKLQVQLRYCNLP  139 (159)
Q Consensus        76 ~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~-l~~--~~~G~l~l~l~~~~~~  139 (159)
                      +++...... .-+.+|.++++|.++...++      .+.....+. ..+  ..-|.|.+.+++..|-
T Consensus        93 lELhqa~g~-~~~tla~~~I~l~~lLe~~~------~i~g~~~L~g~~g~~~~~G~LeywiRL~~Pi  152 (156)
T 2yrb_A           93 LEVHQAYST-EYETIAACQLKFHEILEKSG------RIFCTASLIGTKGDIPNFGTVEYWFRLRVSG  152 (156)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHCCS------CEEEEEEECBSSSCCTTSEEEEEEEEEEECC
T ss_pred             EEEEEeeCC-CceEEEEEEEEhHHhhCcCC------ceEEEEEEEcCCCCcceEEEEEEEEEEeccc
Confidence            888876533 44699999999999986432      111112221 233  3579999999886543

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=93.85  E-value=0.1  Score=33.62  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=26.1

Q ss_pred             CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346          124 IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus       124 ~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      ...|+|+++++|.  +..+.| +.|++|+||.
T Consensus        18 ~~~G~l~~~l~y~--~~~~~L~v~v~~a~~L~   47 (143)
T 3f04_A           18 EKLGKLQYSLDYD--FQNNQLLVGIIQAAELP   47 (143)
T ss_dssp             CCCCEEEEEEEEE--TTTTEEEEEEEEEECCC
T ss_pred             cCeEEEEEEEEEe--CCCCEEEEEEEEecCCC
Confidence            5689999999998  778889 9999999994

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=93.69  E-value=0.098  Score=34.56  Aligned_cols=29  Identities=28%  Similarity=0.542  Sum_probs=25.3

Q ss_pred             CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346          124 IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus       124 ~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      ...|+|++++.|.  +..+.| +.|++|+||.
T Consensus        27 ~~~G~l~~sl~y~--~~~~~L~V~Vi~a~~L~   56 (155)
T 2z0u_A           27 VGATRIQIALKYD--EKNKQFAILIIQLSNLS   56 (155)
T ss_dssp             -CCEEEEEEEEEE--TTTTEEEEEEEEEECGG
T ss_pred             CCcEEEEEEEEEc--CCCCEEEEEEEEccCcC
Confidence            5689999999998  667889 9999999995

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=93.63  E-value=0.11  Score=34.42  Aligned_cols=29  Identities=31%  Similarity=0.522  Sum_probs=26.0

Q ss_pred             CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346          124 IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus       124 ~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      ...|+|.++++|.  +..+.| +.|++|+||.
T Consensus        21 ~~~G~l~~~l~y~--~~~~~L~V~v~~a~~L~   50 (166)
T 2cm5_A           21 EERGKILVSLMYS--TQQGGLIVGIIRCVHLA   50 (166)
T ss_dssp             CCCCEEEEEEEEE--TTTTEEEEEEEEEESCC
T ss_pred             CccceEEEEEEEE--CCCCEEEEEEEEeECCC
Confidence            5689999999998  667889 9999999995

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=93.38  E-value=0.13  Score=33.50  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346          124 IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus       124 ~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      ...|+|+++++|.  +....| |.|++|+||.
T Consensus        26 ~~~G~l~~~l~y~--~~~~~L~V~v~~a~~L~   55 (152)
T 1rsy_A           26 EKLGKLQYSLDYD--FQNNQLLVGIIQAAELP   55 (152)
T ss_dssp             CCCCEEEEEEEEE--TTTTEEEEEEEEEESCC
T ss_pred             CCceEEEEEEEEe--CCCCEEEEEEEEeECCC
Confidence            5689999999998  667889 9999999995

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=93.26  E-value=1.5  Score=30.79  Aligned_cols=55  Identities=11%  Similarity=0.119  Sum_probs=41.1

Q ss_pred             EEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccCC----CCCCccEEEEEeCcc
Q 044346           45 NIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDSF----TKDDRMKDAKIDIRE   99 (159)
Q Consensus        45 ~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~~----~~d~~lG~~~i~l~~   99 (159)
                      .++|.+...+.+|.|+|++.+.+...   ...|.|++++-...    ..+..+|.+-++|-+
T Consensus        78 e~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~~  139 (220)
T 3l4c_A           78 EYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLMR  139 (220)
T ss_dssp             CEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESBC
T ss_pred             eEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEccc
Confidence            55777777889999999999998864   45888998764422    123478999998764

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=92.98  E-value=0.77  Score=39.10  Aligned_cols=90  Identities=10%  Similarity=0.148  Sum_probs=60.3

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC------CeEEEeecccCCCCCccccEEEEEeeC---C-CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA------KENIKIRFIGNNVNPEWNEVFPFSTTY---P-NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~------~~~~~t~~~~~~~~P~w~e~~~~~~~~---~-~~~l~~~v~   79 (159)
                      .....+.|+|..+.++...  ...+.|+.+.+-      .....|..+....+|.|||.+.|.+.-   | +..|.|+||
T Consensus       214 ~~~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~  291 (940)
T 2wxf_A          214 SLEQPFSIELIEGRKVNAD--ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALY  291 (940)
T ss_dssp             TCCSEEEEEEEEEECCCC-----CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEE
T ss_pred             hcCCceEEEEEEecccCCC--CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEE
Confidence            4456789999999988653  345667776553      234455555556789999999998664   2 568999999


Q ss_pred             EccCC--C----------CCCccEEEEEeCccch
Q 044346           80 DHDSF--T----------KDDRMKDAKIDIREYM  101 (159)
Q Consensus        80 d~~~~--~----------~d~~lG~~~i~l~~l~  101 (159)
                      +....  +          .+..+|-+.++|-+..
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  325 (940)
T 2wxf_A          292 AVVEKAKKARSTKKKSKKADCPIAWANLMLFDYK  325 (940)
T ss_dssp             EEC----------------CEEEEEEEEESBCTT
T ss_pred             EecCCccCccccccccccccceEEEEeeeEECCc
Confidence            85321  1          2348899999887744

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=91.99  E-value=2  Score=37.21  Aligned_cols=92  Identities=16%  Similarity=0.247  Sum_probs=60.7

Q ss_pred             ccceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC------CeEEEeecccCCCCCccccEEEEEeeC----CCCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA------KENIKIRFIGNNVNPEWNEVFPFSTTY----PNVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~------~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~~~l~~~v~   79 (159)
                      .....+.|+|..+.++........+.|+.+.+-      .....|+.+. ..+|.|||.+.|.+.-    .+..|.|+||
T Consensus       352 ~~~~~f~v~i~~~~~~n~~~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~  430 (1091)
T 3hhm_A          352 VINSALRIKILCATYVNVNIRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSIC  430 (1091)
T ss_dssp             GCCSEEEEEEEEESCCCCCCSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEEC
T ss_pred             hCCCCEEEEEEEecCCCCCccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEE
Confidence            345678999999887764333345678877664      2334444343 4577899999998654    2679999999


Q ss_pred             EccCC----CCCCccEEEEEeCccchh
Q 044346           80 DHDSF----TKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        80 d~~~~----~~d~~lG~~~i~l~~l~~  102 (159)
                      +-...    .....+|-+.++|-+...
T Consensus       431 ~~~~~~~~~~~~~~lg~~n~~lfd~~~  457 (1091)
T 3hhm_A          431 SVKGRKGAKEEHCPLAWGNINLFDYTD  457 (1091)
T ss_dssp             CCCCCC-------CCEEEEEESBCTTC
T ss_pred             EecCccCcccccceeEEeeeeeEccCC
Confidence            85532    123579999999887543

>2y3a_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit beta isoform; transferase, phosphoinositide 3-kinase, RTK; HET: GD9; 3.30A {Mus musculus}

Probab=82.92  E-value=1.3  Score=38.28  Aligned_cols=89  Identities=10%  Similarity=0.073  Sum_probs=55.5

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEE--ECC----eEEEeecccCCCCCccccEEEEEeeCC----CCcEEEEEEE
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVM--MAK----ENIKIRFIGNNVNPEWNEVFPFSTTYP----NVPIMLSVCD   80 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~--~~~----~~~~t~~~~~~~~P~w~e~~~~~~~~~----~~~l~~~v~d   80 (159)
                      ....+.|+|..+.++...  ...+.|+.+.  -+.    ....|+.+.-..+|.|||.+.|.+.-.    +..|.|+||+
T Consensus       351 ~~~~f~i~i~~~~~~~~~--~~~~~~V~~~l~~g~~~L~~~~~T~~~~~~~~~~Wnewl~f~i~~~dLPr~a~L~~ti~~  428 (1092)
T 2y3a_A          351 NNNPFQITLVKGNKLNTE--ETVKVHVRAGLFHGTELLCKTVVSSEISGKNDHIWNEQLEFDINICDLPRMARLCFAVYA  428 (1092)
T ss_dssp             CCSEEEEEECCCCCCCCC--SSCCCCCBCCEEETTEESSCCCBCCCCCSSSCCCCCEEEEEEEESSSCCTTCEEEEECCC
T ss_pred             cCCCEEEEEEEeccCCCC--CCceEEEEEEEEECCEEccCceecccccCCCCCccceeEEeCCccccCChhcEEEEEEEE
Confidence            356788999988887653  2345565543  332    233454444467899999999987652    5689999998


Q ss_pred             ccCC----------------------CCCCccEEEEEeCccch
Q 044346           81 HDSF----------------------TKDDRMKDAKIDIREYM  101 (159)
Q Consensus        81 ~~~~----------------------~~d~~lG~~~i~l~~l~  101 (159)
                      ....                      ..+..+|-+.++|-+..
T Consensus       429 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~  471 (1092)
T 2y3a_A          429 VLDKVKTKKSTKTINPSKYQTIRKAGKVHYPVAWVNTMVFDFK  471 (1092)
T ss_dssp             C------------------------------CCEEEEESBCTT
T ss_pred             ecCccccccccccccccccccccccccccceeEEEeeeeECCc
Confidence            5210                      01238888888877644

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	4e-13
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	8e-11
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	4e-10
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	3e-09
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-08
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-07
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	2e-07
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	2e-07
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	8e-07
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	8e-07
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	1e-06
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	3e-06
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	4e-06
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	1e-05
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	2e-05

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 60.5 bits (146), Expect = 4e-13
 Identities = 29/124 (23%), Positives = 47/124 (37%), Gaps = 8/124 (6%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYPNV 72
           L + +     L   D     DP V +    ++ K          PEWNE F F+ +    
Sbjct: 12  LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTT 71

Query: 73  PIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQ 132
            +   + D D  T+DD + +A I +     +  I     N VKD +        G++ V 
Sbjct: 72  ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEE------YKGEIWVA 125

Query: 133 LRYC 136
           L + 
Sbjct: 126 LSFK 129

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.3 bits (130), Expect = 8e-11
 Identities = 26/97 (26%), Positives = 43/97 (44%), Gaps = 8/97 (8%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTT 68
           L + ++   NL   D +G SDP V + +      +   K + I  ++NPEWNE F F   
Sbjct: 17  LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 76

Query: 69  YP--NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
               +  + + + D D  +++D M      I E  K 
Sbjct: 77  ESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 113

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.4 bits (125), Expect = 4e-10
 Identities = 13/101 (12%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPF--- 65
           L + I    +L   +     +P V +        K   + + +   + P+WN+ F +   
Sbjct: 16  LIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPV 75

Query: 66  -STTYPNVPIMLSVCDHDSFTKD--DRMKDAKIDIREYMKD 103
               +    + +++ D     ++  + + +  I++   + D
Sbjct: 76  HRREFRERMLEITLWDQARVREEESEFLGEILIELETALLD 116

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.2 bits (119), Expect = 3e-09
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 7/122 (5%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP 73
           L++++ +  +L   D SG SDP   + +  + ++   +  N+NPEWN+VF F     +  
Sbjct: 8   LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDV 67

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQL 133
           + ++V D D     D +    I +        I     N     +  L     G + +++
Sbjct: 68  LEVTVFDEDGDKPPDFLGKVAIPLLS------IRDGQPNCYVLKNKDLEQAFKGVIYLEM 121

Query: 134 RY 135
             
Sbjct: 122 DL 123

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.4 bits (112), Expect = 4e-08
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 7/92 (7%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENI---KIRFIGNNVNPEWNEVFPFSTTYP 70
           L + I Q   L   D  G SDP V V +  +     + +     +NP +NE F F   Y 
Sbjct: 36  LLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYS 95

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
            +    ++++V D D F+K D + + K+ +  
Sbjct: 96  ELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNT 127

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 1e-07
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 15  LRLRIKQGVNLAIHDHSGS-DPCVFVMMAKENI-----KIRFIGNNVNPEWNEVFPFSTT 68
           L + + +  +L   D SG  DP V V +          K        N  +NE+F F   
Sbjct: 17  LTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIP 76

Query: 69  YPNVP---IMLSVCDHDSFTKDDRMKDAKIDIRE 99
             ++    +   V D +  ++++ +    +    
Sbjct: 77  CESLEEISVEFLVLDSERGSRNEVIGRLVLGATA 110

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 25/125 (20%), Positives = 43/125 (34%), Gaps = 7/125 (5%)

Query: 15  LRLRIKQGVNL-AIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVP 73
           L++ +          +  G  P V V +  ++ K     N  +P+W +        P   
Sbjct: 8   LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTV-IVTPVSK 66

Query: 74  IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN---IECGKLQ 130
           +   V  H +   D  +  A +DI E +K    N++    V  L L          G L 
Sbjct: 67  LHFRVWSHQTLKSDVLLGTAALDIYETLK--SNNMKLEEVVVTLQLGGDKEPTETIGDLS 124

Query: 131 VQLRY 135
           + L  
Sbjct: 125 ICLDG 129

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (107), Expect = 2e-07
 Identities = 18/94 (19%), Positives = 37/94 (39%), Gaps = 9/94 (9%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPF---- 65
             + IK+   L   D        ++ M      K  +K R +   ++P ++E F F    
Sbjct: 24  FVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIP 83

Query: 66  STTYPNVPIMLSVCDHDSFTKDDRMKDAKIDIRE 99
            T    + +  ++   D F++DD + +  I +  
Sbjct: 84  YTQIQELALHFTILSFDRFSRDDIIGEVLIPLSG 117

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.0 bits (103), Expect = 8e-07
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 9/100 (9%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENI-----KIRFIGNNVNPEWNEVFPFSTT 68
           L + I +  NL   D  G SDP V + + +        K     N +NP +NE F F   
Sbjct: 27  LTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVP 86

Query: 69  YP---NVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVK 105
           +     V ++++V D+D   K+D +    +       +++
Sbjct: 87  FEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELR 126

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.7 bits (102), Expect = 8e-07
 Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 9/100 (9%)

Query: 15  LRLRIKQGVNLAIHDHSG-SDPCVFVMMAKENIKI-----RFIGNNVNPEWNEVFPFSTT 68
           L + I + V+LA  D +G SDP V + +  +  K      +     +NPE+NE F +   
Sbjct: 17  LIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIK 76

Query: 69  YPNVP---IMLSVCDHDSFTKDDRMKDAKIDIREYMKDVK 105
           + ++    + +SV D+D    +D +   ++ I    + +K
Sbjct: 77  HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLK 116

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 1e-06
 Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 17/131 (12%)

Query: 15  LRLRIKQGVNLAIHDHSG---SDPCVFVMMAKENIKIR------FIGNNVNPEWNEVFPF 65
           LR+RI  G  L   + +     DP V V +                 N  NP W+  F F
Sbjct: 6   LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65

Query: 66  STTYPNVPIM-LSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNI 124
             T P++ ++   V D+DS +K+D +  + I      +  +        V  L       
Sbjct: 66  EVTVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR-------HVHLLSKNGDQH 118

Query: 125 ECGKLQVQLRY 135
               L V++  
Sbjct: 119 PSATLFVKISI 129

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (98), Expect = 3e-06
 Identities = 19/129 (14%), Positives = 41/129 (31%), Gaps = 16/129 (12%)

Query: 15  LRLRIKQGVNL---AIHDHSG-SDPCVFVMMAKENI---KIRFIGNNVNPEWNEVFPFST 67
             + + +   +   A  D     DP V + ++       + R   N++NP WNE F F  
Sbjct: 5   FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 64

Query: 68  TYPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG 127
                 ++       ++  D+ +  A   +                 K++      +   
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSM---------KVGEKKEVPFIFNQVTEM 115

Query: 128 KLQVQLRYC 136
            L++ L   
Sbjct: 116 VLEMSLEVA 124

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.9 bits (97), Expect = 4e-06
 Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTYP 70
           L +RI Q ++L   D +G       +      K+  + +     +NP +NE F FS    
Sbjct: 20  LVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLA 79

Query: 71  NVP---IMLSVCDHDSFTKDDRMKDAKIDIREYMKDV 104
            +    +  SV D D F++ D +    +D    + + 
Sbjct: 80  ELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.5 bits (94), Expect = 1e-05
 Identities = 14/128 (10%), Positives = 42/128 (32%), Gaps = 11/128 (8%)

Query: 15  LRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPI 74
           L + +K+       +    +  V + +               P W + F F     ++ +
Sbjct: 4   LCVGVKKAKFDGAQEKF--NTYVTLKVQNVKSTTI-AVRGSQPSWEQDFMFEINRLDLGL 60

Query: 75  MLSVCDHDSFTKDDRMKDAKIDIREYMKDVK------INLEPRNAVKDLDLKLT-NIECG 127
            + V +      D  +    I +R   +  +      + L+ +  + D ++  T +    
Sbjct: 61  TVEVWNKG-LIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLDSQAIMADSEICGTKDPTFH 119

Query: 128 KLQVQLRY 135
           ++ +   +
Sbjct: 120 RILLDAHF 127

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.8 bits (92), Expect = 2e-05
 Identities = 21/98 (21%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 15  LRLRIKQGVNLAIHDHSGS-DPCVFVMMAKENIKIRF-----IGNNVNPEWNEVFPFSTT 68
           L + I +  NL   D +G  DP V   +  E  +++        N +NP +NE   F   
Sbjct: 22  LTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVA 81

Query: 69  ---YPNVPIMLSVCDHDSFTKDDRMKDAKIDIREYMKD 103
                NV + ++V D+D    ++ +   ++        
Sbjct: 82  PESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH 119

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.94
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.93
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.89
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.88
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.88
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.85
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.82
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.82
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.82
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.81
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.8
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.78
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.76
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.76
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.74
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.72
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.72
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.72
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.65
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.47
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	95.26
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	94.76
d2yrba1	142	Fantom {Human (Homo sapiens) [TaxId: 9606]}	80.18

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.94  E-value=2.9e-26  Score=151.12  Aligned_cols=129  Identities=21%  Similarity=0.267  Sum_probs=109.7

Q ss_pred             cccCcccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeeccc-CCCCCccccEEEEEeeCCCCcEEEEEEEcc
Q 044346            5 DKGRRTSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIG-NNVNPEWNEVFPFSTTYPNVPIMLSVCDHD   82 (159)
Q Consensus         5 ~~~~~~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~-~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~   82 (159)
                      ..|...+.|.|.|+|++|++|+..+ .+.+||||.+.++...++|+++. ++.||.|||.|.|.+......|.|+|||++
T Consensus         2 ~~~~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~~~~~L~v~V~d~d   81 (136)
T d1wfja_           2 SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSEGTTELKAKIFDKD   81 (136)
T ss_dssp             CCCCCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEESSCCEEEEEECCSS
T ss_pred             CCCCCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcCccceEEEEEEEec
Confidence            4577889999999999999999999 89999999999998888999887 589999999999999977788999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeec--CCCcccEEEEEEEEEeCCCC
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKL--TNIECGKLQVQLRYCNLPGS  141 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l--~~~~~G~l~l~l~~~~~~~~  141 (159)
                      .+++|++||++.++|.++.......        ..|+.+  ....+|+|+|+++|.+...+
T Consensus        82 ~~~~d~~iG~~~i~L~~l~~~~~~~--------~~~~~l~~~~~~~G~i~l~l~~~p~~p~  134 (136)
T d1wfja_          82 VGTEDDAVGEATIPLEPVFVEGSIP--------PTAYNVVKDEEYKGEIWVALSFKPSGPS  134 (136)
T ss_dssp             SCTTTCCSEEEEEESHHHHHHSEEE--------EEEEEEEETTEEEEEEEEEEEEEECCSC
T ss_pred             CCCCCCEEEEEEEEhHHhcccCCcC--------cEEEEecCCCccCEEEEEEEEEEeCCCC
Confidence            9999999999999999987643331        234333  34668999999999975443

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=7e-26  Score=147.41  Aligned_cols=122  Identities=18%  Similarity=0.272  Sum_probs=102.4

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCC
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~   88 (159)
                      ...|.|+|+|++|++|+.++ .+.+||||++.++...++|+++.++.||.|+|.|.|.+..+...|.|+|||++.+++|+
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~~~~~L~i~V~d~~~~~~d~   82 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKDIHDVLEVTVFDEDGDKPPD   82 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESCTTCEEEEEEEEEETTEEEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEeccCceeEEEEEEccCCcCcc
Confidence            46799999999999999999 89999999999999999999999999999999999999877889999999999999999


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      +||++.++|+++..+.....      .-.+..+....+|+|+|+++++.
T Consensus        83 ~lG~~~i~l~~l~~~~~~~~------~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          83 FLGKVAIPLLSIRDGQPNCY------VLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             ECCBCEEEGGGCCSSCCEEC------CCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             eEEEEEEEHHHCCCCCceEE------EccccCCCCceeEEEEEEEEEEE
Confidence            99999999999755321100      00112234466899999999873

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2e-22  Score=131.99  Aligned_cols=121  Identities=21%  Similarity=0.290  Sum_probs=97.9

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCcc
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRM   90 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~l   90 (159)
                      .+.|.|+|++|++++..+ .+.+||||.+.++.+.++|+++.++.||.|||.|.|.+. +...|.|+|||++.+++|++|
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~-~~~~l~~~V~d~d~~~~d~~i   83 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT-PVSKLHFRVWSHQTLKSDVLL   83 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEEC-TTCEEEEEEEECCSSSCCEEE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEE-ecceeEEEEEEccCCCCCceE
Confidence            478999999999999988 888999999999999999999999999999999999987 467899999999999999999


Q ss_pred             EEEEEeCccchhhcccCCCCCceeeeEEeec-----CCCcccEEEEEEEEEe
Q 044346           91 KDAKIDIREYMKDVKINLEPRNAVKDLDLKL-----TNIECGKLQVQLRYCN  137 (159)
Q Consensus        91 G~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l-----~~~~~G~l~l~l~~~~  137 (159)
                      |++.++|.++...........    ..++.+     .....|+|.|.+.+..
T Consensus        84 G~~~i~L~~l~~~~~~~~~~~----~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          84 GTAALDIYETLKSNNMKLEEV----VVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEHHHHHHHTTTEESSE----EEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             EEEEEEHHHhhhhcCCceeeE----EEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            999999999876432222111    223322     1245699998887653

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.88  E-value=5.2e-22  Score=130.49  Aligned_cols=118  Identities=17%  Similarity=0.171  Sum_probs=99.5

Q ss_pred             ccceEEEEEEEEeeCCCCCC------------CCCCCcEEEEEECCeE-EEeecccCCCCCccccEEEEEeeCCCCcEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD------------HSGSDPCVFVMMAKEN-IKIRFIGNNVNPEWNEVFPFSTTYPNVPIML   76 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~------------~~~~dpy~~v~~~~~~-~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~   76 (159)
                      -..|.|.|+|.+|++|++.+            .+.+||||.+.++... .+|++..++.+|.|||.|.|.+.+ ...|.|
T Consensus         3 ~~~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~-~~~l~i   81 (136)
T d1gmia_           3 VFNGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN-GRKIEL   81 (136)
T ss_dssp             CEEEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE-ECEEEE
T ss_pred             cEEEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec-CCceEE
Confidence            35789999999999998742            5678999999999755 478888899999999999999874 578999


Q ss_pred             EEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           77 SVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        77 ~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      +|||++.+++|++||.+.++|+++..+...       ..+.|+.+  .+.|+|++.+++.+
T Consensus        82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~-------~~~~w~~L--~p~G~v~l~v~~~~  133 (136)
T d1gmia_          82 AVFHDAPIGYDDFVANCTIQFEELLQNGSR-------HFEDWIDL--EPEGKVYVIIDLSG  133 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCS-------EEEEEEEC--BSSCEEEEEEEEEE
T ss_pred             EEEEecCCCCceeEEEEEEEHHHhhhcCCc-------ceeEEEeC--CCCcEEEEEEEEEe
Confidence            999999999999999999999998764332       23779888  46899999998864

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=130.99  Aligned_cols=115  Identities=16%  Similarity=0.292  Sum_probs=98.1

Q ss_pred             ceEEEEEEEEeeCCCCCC----CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC-CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIHD----HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP-NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~----~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~~   83 (159)
                      .+.|+|+|++|++|+...    .+.+||||++.++   .++++|+++.++.||.|+|.|.|.+... ...|.|+|||++.
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~~~~~~L~v~V~d~d~   81 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPNQENVLEITLMDANY   81 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTTSCCEEEEEEEECCS
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccCcccCcEEEEEEECCC
Confidence            468999999999999753    5789999999997   3678999999999999999999998765 4589999999987


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEE
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYC  136 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~  136 (159)
                      . +|++||++.++|.++..+...         +.|+.+.+...|+|++++++.
T Consensus        82 ~-~d~~lG~~~i~L~~l~~~~~~---------~~~~~L~~~~~g~i~~~l~~~  124 (126)
T d1rlwa_          82 V-MDETLGTATFTVSSMKVGEKK---------EVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             S-CCEEEEEEEEEGGGSCTTCEE---------EEEEEETTTEEEEEEEEEECC
T ss_pred             C-CCCeEEEEEEEHHHccCCCeE---------EEEEEccCCCeEEEEEEEEEE
Confidence            6 679999999999997653333         779999888889999998876

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.85  E-value=1.4e-21  Score=127.75  Aligned_cols=106  Identities=28%  Similarity=0.379  Sum_probs=89.8

Q ss_pred             ceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE-----CCeEEEeecccCCCCCccccEEEEEeeCC--CCcEEEEEEEccC
Q 044346           12 LLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM-----AKENIKIRFIGNNVNPEWNEVFPFSTTYP--NVPIMLSVCDHDS   83 (159)
Q Consensus        12 ~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~-----~~~~~~t~~~~~~~~P~w~e~~~~~~~~~--~~~l~~~v~d~~~   83 (159)
                      .+.|.|+|.+|++|+.++ .+.+||||++++     ...+++|+++.++.||.|||.|.|.+...  ...|.|+|||++.
T Consensus        14 ~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          14 REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccCCEEeEEEEecCC
Confidence            468999999999999999 889999999998     35678999999999999999999998754  3579999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCccc
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECG  127 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G  127 (159)
                      +++|++||.+.++|.++... ..         +.|+.+.+...|
T Consensus        94 ~~~d~~iG~~~i~l~~l~~~-~~---------~~W~~L~~~~~g  127 (132)
T d1a25a_          94 TSRNDFMGSLSFGISELQKA-GV---------DGWFKLLSQEEG  127 (132)
T ss_dssp             SSCCEEEEEEEEEHHHHTTC-CE---------EEEEECBCHHHH
T ss_pred             CCCCcEeEEEEEeHHHcCCC-CC---------CeEEECCCCCCC
Confidence            99999999999999996532 12         568888664444

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=7.2e-20  Score=121.04  Aligned_cols=103  Identities=25%  Similarity=0.353  Sum_probs=87.9

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEE---CCeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~---~~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++++   ....++|+++.++.||.|||.|.|.+...   ...|.|+|||++.
T Consensus        32 ~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          32 QNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCCceEEEEEEEcCC
Confidence            3568999999999999998 889999999998   35678999999999999999999987643   4689999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT  122 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~  122 (159)
                      ++++++||++.++|+++......         +.|+.|.
T Consensus       112 ~~~~~~iG~~~i~L~~~~~~~~~---------~~W~~L~  141 (143)
T d1rsya_         112 FSKHDIIGEFKVPMNTVDFGHVT---------EEWRDLQ  141 (143)
T ss_dssp             SSCCEEEEEEEEEGGGCCCSSCE---------EEEEECB
T ss_pred             CCCCcEEEEEEEEchhccCCCCC---------ccEEeCC
Confidence            99999999999999997543322         6788774

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=2.5e-19  Score=116.13  Aligned_cols=87  Identities=13%  Similarity=0.172  Sum_probs=77.9

Q ss_pred             eEEEEEEEEeeCCCCCCCCCCCcEEEEEECCeEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCCccEE
Q 044346           13 LSLRLRIKQGVNLAIHDHSGSDPCVFVMMAKENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDDRMKD   92 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~~~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~~lG~   92 (159)
                      +.|.|+|.+|++|..++  ..||||.+.+++.+.+|.+++ +.||.|+|.|.|.+..+...|.|+|||++.. +|++||+
T Consensus         2 ~~L~V~v~~a~~l~~~~--~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~~~~~L~v~V~d~~~~-~d~~lG~   77 (128)
T d2cjta1           2 SLLCVGVKKAKFDGAQE--KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINRLDLGLTVEVWNKGLI-WDTMVGT   77 (128)
T ss_dssp             EEEEEEEEEEECSSCGG--GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECCCSSEEEEEEEECCSS-CEEEEEE
T ss_pred             eEEEEEEEEEECCCCCC--CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeeccccceEEEEEEeCCCc-CCcceEE
Confidence            57999999999999966  679999999999888888876 5599999999999998888999999999877 6899999


Q ss_pred             EEEeCccchhh
Q 044346           93 AKIDIREYMKD  103 (159)
Q Consensus        93 ~~i~l~~l~~~  103 (159)
                      +.++|+++...
T Consensus        78 ~~I~L~~l~~~   88 (128)
T d2cjta1          78 VWIPLRTIRQS   88 (128)
T ss_dssp             EEEEGGGSCBC
T ss_pred             EEEEehhhccC
Confidence            99999998643

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=4.3e-19  Score=115.62  Aligned_cols=112  Identities=27%  Similarity=0.331  Sum_probs=86.1

Q ss_pred             eEEEEEEEEeeCCCCC--C-CCCCCcEEEEEEC-----CeEEEeecccC-CCCCccccEEEEEeeCC-CCcEEEEEEEcc
Q 044346           13 LSLRLRIKQGVNLAIH--D-HSGSDPCVFVMMA-----KENIKIRFIGN-NVNPEWNEVFPFSTTYP-NVPIMLSVCDHD   82 (159)
Q Consensus        13 ~~L~v~v~~a~~L~~~--~-~~~~dpy~~v~~~-----~~~~~t~~~~~-~~~P~w~e~~~~~~~~~-~~~l~~~v~d~~   82 (159)
                      ..|+|+|++|++|+..  + ++.+||||++.+.     ..+++|+++.+ +.||.|+|+|.|.+..+ ...|.|+|||++
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~~~~~L~~~V~D~d   83 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLALVRFMVEDYD   83 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCGGGCEEEEEEEECC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcchhceEEEEEEEec
Confidence            4799999999999754  4 6789999999983     57788888765 57999999999988765 457999999999


Q ss_pred             CCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecC---CC--cccEEEEEEEEE
Q 044346           83 SFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLT---NI--ECGKLQVQLRYC  136 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~---~~--~~G~l~l~l~~~  136 (159)
                      .+++|++||++.++|+.+..+            ..|+++.   +.  ..+.|.+++++.
T Consensus        84 ~~~~d~~iG~~~i~l~~l~~g------------~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          84 SSSKNDFIGQSTIPWNSLKQG------------YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             TTTCCEEEEEEEEEGGGBCCE------------EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEEEEEEeccCCC------------CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            999999999999999987542            1233332   22  356778887765

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=1.9e-19  Score=117.19  Aligned_cols=91  Identities=27%  Similarity=0.395  Sum_probs=80.1

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC---CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEcc
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA---KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHD   82 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~---~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~   82 (159)
                      ...+.|.|+|++|++|+.++ .+.+||||++++.   ..+++|+++.++.+|.|+|.|.|.+...   ...|.|+|||++
T Consensus        15 ~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~~~~L~v~V~d~~   94 (130)
T d1dqva1          15 YGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELAQRKLHFSVYDFD   94 (130)
T ss_dssp             SSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGSSCCCEEEEEECC
T ss_pred             CCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcCCCeEEEEEEEcC
Confidence            45678999999999999998 8899999999984   5678999999999999999999997653   457999999999


Q ss_pred             CCCCCCccEEEEEeCccc
Q 044346           83 SFTKDDRMKDAKIDIREY  100 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l  100 (159)
                      .+++|++||++.+++...
T Consensus        95 ~~~~d~~iG~~~i~~~~~  112 (130)
T d1dqva1          95 RFSRHDLIGQVVLDNLLE  112 (130)
T ss_dssp             SSSCCCEEEEEECCCTTG
T ss_pred             CCCCCceEEEEEECchhh
Confidence            999999999999986543

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.80  E-value=2.2e-20  Score=123.30  Aligned_cols=104  Identities=24%  Similarity=0.348  Sum_probs=86.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC--------------CeEEEeecccCCCCCccccEEEEEeeC----CC
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA--------------KENIKIRFIGNNVNPEWNEVFPFSTTY----PN   71 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~--------------~~~~~t~~~~~~~~P~w~e~~~~~~~~----~~   71 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++++.              ..+++|+++.++.||.|||.|.|....    ..
T Consensus        16 ~~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~~   95 (142)
T d1rh8a_          16 DLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTVIYKSISMEQLMK   95 (142)
T ss_dssp             ETTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEEEECSCCHHHHTT
T ss_pred             eCCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEEEEeeecccccCC
Confidence            3578999999999999999 8999999999984              123578888889999999999998433    25


Q ss_pred             CcEEEEEEEccCCCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           72 VPIMLSVCDHDSFTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        72 ~~l~~~v~d~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ..|.|+|||++.+++|++||++.++|.++......         ..|+.|.+
T Consensus        96 ~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~---------~~W~~L~~  138 (142)
T d1rh8a_          96 KTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNT---------PRWYPLKE  138 (142)
T ss_dssp             CEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTC---------CEEEECBC
T ss_pred             CEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCc---------eEEEECcC
Confidence            58999999999999999999999999998764433         56887754

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=6.3e-18  Score=110.91  Aligned_cols=91  Identities=23%  Similarity=0.473  Sum_probs=78.2

Q ss_pred             cceEEEEEEEEeeCCCCCC-CC-CCCcEEEEEE---CCeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HS-GSDPCVFVMM---AKENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~-~~dpy~~v~~---~~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~d~   81 (159)
                      ....|.|+|++|++|+.++ .+ .+||||++.+   ...+++|+++.++.||.|||.|.|. +...   ...|.|+|||+
T Consensus        20 ~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l~~~~L~~~V~d~   99 (138)
T d1ugka_          20 ERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQIQELALHFTILSF   99 (138)
T ss_dssp             GGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTTGGGCEEEEEEEEE
T ss_pred             CCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHHHcccceEEEEEEEC
Confidence            3467999999999999987 44 5799999998   3667899999999999999999997 4432   34799999999


Q ss_pred             cCCCCCCccEEEEEeCccch
Q 044346           82 DSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~  101 (159)
                      +.++++++||++.++|.++.
T Consensus       100 d~~~~~~~iG~~~i~L~~~~  119 (138)
T d1ugka_         100 DRFSRDDIIGEVLIPLSGIE  119 (138)
T ss_dssp             CSSCCCCCCEEEEEECTTCC
T ss_pred             CCCCCCcEEEEEEEEccccc
Confidence            99999999999999999963

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7e-18  Score=110.69  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=84.6

Q ss_pred             cceEEEEEEEEeeCCCCCCCCCCCcEEEEEEC----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEccC
Q 044346           11 SLLSLRLRIKQGVNLAIHDHSGSDPCVFVMMA----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDHDS   83 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~~~~~dpy~~v~~~----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~~~   83 (159)
                      ..+.|.|+|++|++|+.  .+.+||||++.+.    ...++|+++.++.+|.|+|.|.|.+...   ...|.|+|||++.
T Consensus        24 ~~~~L~V~v~~a~~L~~--~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~~~~L~~~V~d~~~  101 (138)
T d1wfma_          24 QKAELFVTRLEAVTSNH--DGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             TTTEEEEEEEEEECCCC--SSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCCEEEEEEEEcCCCCC--CCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhccceEEEEEEeeecc
Confidence            35689999999999955  5678999999985    3356899999999999999999998653   4589999999999


Q ss_pred             CCCCCccEEEEEeCccchhhcccCCCCCceeeeEEeecCC
Q 044346           84 FTKDDRMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTN  123 (159)
Q Consensus        84 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~  123 (159)
                      ++++++||++.++|.++......         +.|+.+..
T Consensus       102 ~~~~~~iG~~~i~L~~l~~~~~~---------~~W~~L~~  132 (138)
T d1wfma_         102 FSRHSVAGELRLGLDGTSVPLGA---------AQWGELKT  132 (138)
T ss_dssp             SCTTSCSEEEEEESSSSSSCTTC---------CEEEECCC
T ss_pred             cccceeeeEEEEEhHHccCCCCc---------eEeEeCCC
Confidence            99999999999999997543333         66887754

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.76  E-value=7.5e-18  Score=108.43  Aligned_cols=112  Identities=17%  Similarity=0.227  Sum_probs=83.8

Q ss_pred             EEEEEEEeeCCCCCC-CCCCCcEEEEEECC-----eEEEeecccCCCCCccccEEEEEeeCCCCcEEEEEEEccCCCCCC
Q 044346           15 LRLRIKQGVNLAIHD-HSGSDPCVFVMMAK-----ENIKIRFIGNNVNPEWNEVFPFSTTYPNVPIMLSVCDHDSFTKDD   88 (159)
Q Consensus        15 L~v~v~~a~~L~~~~-~~~~dpy~~v~~~~-----~~~~t~~~~~~~~P~w~e~~~~~~~~~~~~l~~~v~d~~~~~~d~   88 (159)
                      |+|.+....--+... ++.+||||.+++..     ...+|.+.++|+||+|||+|.|.+.. .+.+.|.|||++    ++
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~-~~~l~i~V~d~d----d~   79 (123)
T d1bdya_           5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE-GRVIQIVLMRAA----ED   79 (123)
T ss_dssp             EEEEEEEEECCTTCCCCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT-TCEEEEEEEEET----TE
T ss_pred             EEEEEEEeecccCCCCCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc-ccEEEEEEEEcc----cc
Confidence            445544432222233 78899999999952     24567788899999999999999874 578999999976    57


Q ss_pred             ccEEEEEeCccchhhcccCCCCCceeeeEEeecCCCcccEEEEEEEEEe
Q 044346           89 RMKDAKIDIREYMKDVKINLEPRNAVKDLDLKLTNIECGKLQVQLRYCN  137 (159)
Q Consensus        89 ~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~G~l~l~l~~~~  137 (159)
                      ++|.+.+.+.++......    .....+.|+.+  .+.|+|+++++|..
T Consensus        80 ~~g~~~i~l~~l~~~~~~----~~~~~~~W~~L--~~~Gkl~l~v~~f~  122 (123)
T d1bdya_          80 PMSEVTVGVSVLAERCKK----NNGKAEFWLDL--QPQAKVLMCVQYFL  122 (123)
T ss_dssp             EEEEEEEEHHHHHHHHHT----TTTEEEEEEEC--BSSCEEEEEEEEEE
T ss_pred             ccCccEEehhheeecccc----CCCcccEEEeC--CCCEEEEEEEEEec
Confidence            999999999998764322    11134789888  57999999999963

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.74  E-value=1.7e-17  Score=108.57  Aligned_cols=93  Identities=27%  Similarity=0.304  Sum_probs=81.5

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ...+.|.|+|.+|++|+..+ .+.+||||++.+.     ..+++|+++.++.+|.|||.|.|.+...   ...|.|++|+
T Consensus        12 ~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~~~l~v~v~~   91 (137)
T d2cm5a1          12 TQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSLDISVWD   91 (137)
T ss_dssp             TTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHccccEEEEEeee
Confidence            45678999999999999988 8899999999973     4567899999999999999999998654   3589999999


Q ss_pred             ccCCCCCCccEEEEEeCccchh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      ++.++++++||++.+++..+..
T Consensus        92 ~~~~~~~~~iG~~~i~l~~~~~  113 (137)
T d2cm5a1          92 YDIGKSNDYIGGCQLGISAKGE  113 (137)
T ss_dssp             CCSSSCCEEEEEEEEETTCCHH
T ss_pred             CCCCCCCCEEEEEEeCccccCc
Confidence            9999999999999999987544

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2e-17  Score=106.72  Aligned_cols=93  Identities=14%  Similarity=0.289  Sum_probs=75.3

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEE-eeCC---CCcEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFS-TTYP---NVPIMLSVC   79 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~-~~~~---~~~l~~~v~   79 (159)
                      ...+.|.|+|.+|++|+..+ .+.+||||++.+.     ..+++|+++.++.+|.|||.|.|. +...   ...|.|+||
T Consensus        11 ~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l~~~~L~i~v~   90 (125)
T d2bwqa1          11 KVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREFRERMLEITLW   90 (125)
T ss_dssp             TTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGGGGCEEEEEEE
T ss_pred             CCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhcCCCEEEEEEE
Confidence            34578999999999999988 8899999999983     456899999999999999999997 4432   347999999


Q ss_pred             EccCCC--CCCccEEEEEeCccchh
Q 044346           80 DHDSFT--KDDRMKDAKIDIREYMK  102 (159)
Q Consensus        80 d~~~~~--~d~~lG~~~i~l~~l~~  102 (159)
                      |++.++  ++++||++.++|+++..
T Consensus        91 d~~~~~~~~~~~iG~~~i~l~~~~~  115 (125)
T d2bwqa1          91 DQARVREEESEFLGEILIELETALL  115 (125)
T ss_dssp             EC-------CEEEEEEEEEGGGCCC
T ss_pred             ECCCCCCCCCeeEEEEEEEchhcCC
Confidence            998764  45699999999998654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=1.8e-17  Score=108.69  Aligned_cols=91  Identities=18%  Similarity=0.196  Sum_probs=74.3

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|++|++|+.++ .+.+||||++++.     ..+.+|+++.++.||.|||+|.|.+...   ...|.|+|||+
T Consensus        13 ~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~i~v~d~   92 (138)
T d1w15a_          13 TTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLEEISVEFLVLDS   92 (138)
T ss_dssp             TTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSSTTEEEEEEEEEC
T ss_pred             CCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhCccEEEEEEEeC
Confidence            4568999999999999998 8899999999983     2355788999999999999999998654   34699999999


Q ss_pred             cCCCCCCccEEEEEeCccch
Q 044346           82 DSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~  101 (159)
                      +.++++++||++.+++....
T Consensus        93 ~~~~~~~~iG~~~i~l~~~~  112 (138)
T d1w15a_          93 ERGSRNEVIGRLVLGATAEG  112 (138)
T ss_dssp             CTTSCCEEEEEEEESTTCCS
T ss_pred             CCCCCCCEEEEEEEcchhCC
Confidence            99999999999999988643

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.72  E-value=3.1e-17  Score=109.78  Aligned_cols=91  Identities=25%  Similarity=0.341  Sum_probs=79.5

Q ss_pred             cceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEEc
Q 044346           11 SLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCDH   81 (159)
Q Consensus        11 ~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d~   81 (159)
                      ..+.|.|+|.+|++|+..+ .+.+||||++++.     ...++|++..++.||.|||+|.|.+...   ...|.|++||+
T Consensus        23 ~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l~~~~l~i~v~d~  102 (157)
T d1uowa_          23 TAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDY  102 (157)
T ss_dssp             TTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGGGGCEEEEEEEEC
T ss_pred             CCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHcCccEEEEEEccc
Confidence            4578999999999999988 8899999999985     1345788999999999999999998764   34799999999


Q ss_pred             cCCCCCCccEEEEEeCccch
Q 044346           82 DSFTKDDRMKDAKIDIREYM  101 (159)
Q Consensus        82 ~~~~~d~~lG~~~i~l~~l~  101 (159)
                      +.++++++||++.+++....
T Consensus       103 ~~~~~~~~iG~~~i~l~~~~  122 (157)
T d1uowa_         103 DKIGKNDAIGKVFVGYNSTG  122 (157)
T ss_dssp             CSSSCCCEEEEEEEETTCCH
T ss_pred             CCCCCCceeEEEEEecccCC
Confidence            99999999999999997753

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3e-17  Score=108.41  Aligned_cols=93  Identities=23%  Similarity=0.271  Sum_probs=80.6

Q ss_pred             ccceEEEEEEEEeeCCCCCC-CCCCCcEEEEEEC-----CeEEEeecccCCCCCccccEEEEEeeCC---CCcEEEEEEE
Q 044346           10 TSLLSLRLRIKQGVNLAIHD-HSGSDPCVFVMMA-----KENIKIRFIGNNVNPEWNEVFPFSTTYP---NVPIMLSVCD   80 (159)
Q Consensus        10 ~~~~~L~v~v~~a~~L~~~~-~~~~dpy~~v~~~-----~~~~~t~~~~~~~~P~w~e~~~~~~~~~---~~~l~~~v~d   80 (159)
                      ...+.|.|+|.+|++|+..+ .+.+||||++++.     ..+++|+++.++.||.|+|.|.|.+...   ...|.|++||
T Consensus        17 ~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~~~~l~v~v~d   96 (145)
T d1dqva2          17 PTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPESVENVGLSIAVVD   96 (145)
T ss_dssp             TTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGGGGSCCCCCEEEE
T ss_pred             CCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhhcCCCEEEEEEEe
Confidence            34678999999999999988 8889999999986     2356899999999999999999987643   4579999999


Q ss_pred             ccCCCCCCccEEEEEeCccchh
Q 044346           81 HDSFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        81 ~~~~~~d~~lG~~~i~l~~l~~  102 (159)
                      ++.++++++||++.++++.+..
T Consensus        97 ~~~~~~~~~iG~~~i~l~~~~~  118 (145)
T d1dqva2          97 YDCIGHNEVIGVCRVGPEAADP  118 (145)
T ss_dssp             CCSSSCCEEEEECCCSSCTTCH
T ss_pred             cCCCCCCcEEEEEEECchHcCc
Confidence            9999999999999999987643

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=1.2e-12  Score=83.45  Aligned_cols=82  Identities=21%  Similarity=0.361  Sum_probs=62.6

Q ss_pred             EEEEEEEEeeCCCCCCCCCCCcEEEEEEC------CeEEEeec--ccCCCCCccccE-EEE-EeeCCC-CcEEEEEEEcc
Q 044346           14 SLRLRIKQGVNLAIHDHSGSDPCVFVMMA------KENIKIRF--IGNNVNPEWNEV-FPF-STTYPN-VPIMLSVCDHD   82 (159)
Q Consensus        14 ~L~v~v~~a~~L~~~~~~~~dpy~~v~~~------~~~~~t~~--~~~~~~P~w~e~-~~~-~~~~~~-~~l~~~v~d~~   82 (159)
                      .|.|+|++|++|+..   ..||||.+.+-      ..+.+|++  ..++.||.|||. +.+ .+..++ ..|.|.|||++
T Consensus         2 tl~V~Visaq~L~~~---~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2           2 TLSITVISGQFLSER---SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             EEEEEEEEEESCCSS---CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeeCCCCC---CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            589999999999874   47899999982      23344444  357899999976 433 344443 47999999975


Q ss_pred             CCCCCCccEEEEEeCccchh
Q 044346           83 SFTKDDRMKDAKIDIREYMK  102 (159)
Q Consensus        83 ~~~~d~~lG~~~i~l~~l~~  102 (159)
                          |+++|++.++|+.+..
T Consensus        79 ----~~~lG~~~ipl~~l~~   94 (122)
T d2zkmx2          79 ----NKFLGHRIIPINALNS   94 (122)
T ss_dssp             ----TEEEEEEEEEGGGBCC
T ss_pred             ----CCEEEEEEEEcccCcC
Confidence                6899999999998765

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.26  E-value=0.014  Score=36.45  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=25.8

Q ss_pred             CcccEEEEEEEEEeCCCCCce-EEEEEecccc
Q 044346          124 IECGKLQVQLRYCNLPGSKGF-IMFYECSSLC  154 (159)
Q Consensus       124 ~~~G~l~l~l~~~~~~~~~~l-~~~~~~~~l~  154 (159)
                      ...|+|+++++|.  +..+.| |.|++|+||.
T Consensus        18 ~~~G~l~~sl~y~--~~~~~L~V~V~~a~~L~   47 (143)
T d1rsya_          18 EKLGKLQYSLDYD--FQNNQLLVGIIQAAELP   47 (143)
T ss_dssp             CCCCEEEEEEEEE--TTTTEEEEEEEEEESCC
T ss_pred             hcceEEEEEEEEe--CCCCEEEEEEEEccCCC
Confidence            5679999999998  667899 9999999994

>d2yrba1 b.7.1.1 (A:596-737) Fantom {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Fantom
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.18  E-value=4.6  Score=24.69  Aligned_cols=93  Identities=11%  Similarity=0.069  Sum_probs=60.4

Q ss_pred             cccceEEEEEEEEeeCCCCC----CCCCCCcEEEEEECC-eEEEeecccCCCCCccccEEEEEeeCC--------CCcEE
Q 044346            9 RTSLLSLRLRIKQGVNLAIH----DHSGSDPCVFVMMAK-ENIKIRFIGNNVNPEWNEVFPFSTTYP--------NVPIM   75 (159)
Q Consensus         9 ~~~~~~L~v~v~~a~~L~~~----~~~~~dpy~~v~~~~-~~~~t~~~~~~~~P~w~e~~~~~~~~~--------~~~l~   75 (159)
                      +...+.+.+.|.++.--+..    +...+.-||++.+-. +.+.| .+..+.+|.+|.+..+.+...        ...+.
T Consensus         6 ~~gEnlfEihi~~~~~s~e~l~~~~d~~p~tF~T~~Fyd~Etq~T-Pv~~g~~p~ynfts~Y~V~~d~~fl~YL~~~~~~   84 (142)
T d2yrba1           6 ERGENLFEIHINKVTFSSEVLQASGDKEPVTFCTYAFYDFELQTT-PVVRGLHPEYNFTSQYLVHVNDLFLQYIQKNTIT   84 (142)
T ss_dssp             CSSCEEEEEEEEEECCCHHHHHHHCSSCCEEEEEECSTTCCCEEC-CCEESSSCCCCEEEEEEECCSHHHHHHHHHCCEE
T ss_pred             cCCCcEEEEEEeeEEEcHHHHhhccCCCCcEEEEEEEEeeeeecC-ceecCCCCcceeEEEEEEccCHHHHHHHhhCCEE
Confidence            34567788888776322211    112334477766553 44444 444556899998888887753        34889


Q ss_pred             EEEEEccCCCCCCccEEEEEeCccchhh
Q 044346           76 LSVCDHDSFTKDDRMKDAKIDIREYMKD  103 (159)
Q Consensus        76 ~~v~d~~~~~~d~~lG~~~i~l~~l~~~  103 (159)
                      ++++..... .-..+|.+.+.+.++...
T Consensus        85 lelhqa~g~-~~~tvA~g~i~l~~lLd~  111 (142)
T d2yrba1          85 LEVHQAYST-EYETIAACQLKFHEILEK  111 (142)
T ss_dssp             EEEEEECSS-CEEEEEEEEECCSHHHHC
T ss_pred             EEEEeecCC-CcceeEEEEEEhhHhhCc
Confidence            999986633 334799999999998763