Citrus Sinensis ID: 044353

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590------
Protein Sequence
SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLNQ
Secondary Structure (PSIPRED)
cEEccccccEEEccccccccccccEEEcccccccccccccccccccccEEEcccccccEEEccccccccccccEEEccccEEEEEEcccccccccccEEEEccccccccccHHccccccccEEEcccccccccccHHHHHHcccccEEEcccccccccccccccccccccccccccccEEEccccccEEEccccccccccccccccEEEcccccccccccccccccccccEEEccccccEEEccccccccccccEEEccccEEEEEccHHHHHcccccEEEcccccccccccHHHHHHcccccEEEccccccEEEccccccccccccEEEcccccccccccccccccccccccccccccccEEEccccccEEEEEEEEEEcccEEEEccccccEEEEEcccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccEEEEEEEEHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEEcccccccccccHHccccccccEEEEccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEEccccccccccHHHccccccccccccccEEEEcccccccccccHHHHHHHHccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHHcccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccccccccEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHccHHHccHHHccccccccccccccccccEEEccccccccccccHHccHHHHHHEEHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHcc
Coil and Loop (DISEMBL)
slflrrsqfyGHLTNQLGRFKtlraldlsnntvngpiplslgqianleyldlsnnklngtvseIHFLNLTQLLVFRAHGnslvfkinpnwvppFQLAFLELrschlgprfplwlqsqkklyyldisstrisakiprgfwnsifQYDYLNVSgnqiyggvpkfdspsvplittpsllgsifdlsnnalsgsIFHLICQGENFSKNIEFLKLSKnhfsedipdcwmnwprlrmlnlgnnnftgslpmsIGALNSLMSLNLrnnrlsgiiptsfrNLSILKAldmgenelvgniptwiGETFSRLMILNlrsnkfhgdfpiqlcrlgsLQILDVAYNslsgtiprcinnfsamattdssdpnsgifyassgdneiVEDALLVTKGFLVEYNSILNLVRSIdisknnfsgeipvevtnlqglqslnlshnlftgripdnigvMRSIESLdfsanqlsgqipqsmsnlsFLNYLNLsnnnlngeipsstqlqsfgassfagndlcgaplsncteknilipedengsgnedddedgVDWLLYISMALGFVVGFWCfigpllikrrwRYKYCHFLDrlwdgcfvrkcyqifHVCTCVFYVLNQ
Flexible Loop (DISEMBL)
slflrrsqfygHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILipedengsgneDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLNQ
Low Complexity Region (SEG)
SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAlnslmslnlrnnrlsGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMsnlsflnylnlsnnnlnGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPedengsgnedddedgvdWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLNQ
Disordered region (IsUnstruct)
***LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA*********GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA************NLSFLNYLNLSN********************FAGNDLCGAPLSNCTEKNIL****************GVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVL**
Disordered Region (DISOPRED)
SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTD***PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAP****************************DWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLN*
Disordered Region (DISEMBL)
SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDE********DEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLNQ
Disordered Region (DISPRO)
*LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFY****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQIFHVCTCVFYVLNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	596	2.2.26 [Sep-21-2011]
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.798	0.380	0.322	6e-54
Q9C9H7	847	Receptor-like protein 12	no	no	0.895	0.630	0.301	2e-53
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.783	0.373	0.323	4e-51
Q9FL28	1173	LRR receptor-like serine/	no	no	0.823	0.418	0.309	6e-50
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.867	0.455	0.303	9e-48
Q9ZPS9	1143	Serine/threonine-protein	no	no	0.837	0.436	0.295	9e-47
C0LGW6	966	LRR receptor-like serine/	no	no	0.731	0.451	0.310	1e-44
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.802	0.433	0.312	3e-43
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.744	0.403	0.309	4e-43
Q6XAT2	967	LRR receptor-like serine/	no	no	0.719	0.443	0.303	5e-43

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  212 bits (540), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 177/548 (32%), Positives = 262/548 (47%), Gaps = 72/548 (13%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           LFL  +Q  G +  ++   ++L+ LDLSNNT+ G IP SL Q+  L  L L+NN L GT+
Sbjct: 342 LFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQLVELTNLYLNNNSLEGTL 401

Query: 62  SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY 121
           S     NLT L  F  + N+L  K+        +L  + L         P+ + +  +L 
Sbjct: 402 SS-SISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYLYENRFSGEMPVEIGNCTRLQ 460

Query: 122 YLDISSTRISAKIPRGF-----------------------WNSIFQYDYLNVSGNQIYGG 158
            +D    R+S +IP                            +  Q   ++++ NQ+ G 
Sbjct: 461 EIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIPASLGNCHQMTVIDLADNQLSGS 520

Query: 159 VPK----FDSPSVPLITTPSLLGSIFD------------LSNNALSGSIFHLICQGENFS 202
           +P       +  + +I   SL G++ D             S+N  +GSI  L       S
Sbjct: 521 IPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLS 580

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
            ++     ++N F  DIP        L  L LG N FTG +P + G ++ L  L++  N 
Sbjct: 581 FDV-----TENGFEGDIPLELGKSTNLDRLRLGKNQFTGRIPRTFGKISELSLLDISRNS 635

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           LSGIIP        L  +D+  N L G IPTW+G+    L  L L SNKF G  P ++  
Sbjct: 636 LSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGK-LPLLGELKLSSNKFVGSLPTEIFS 694

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAM-ATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
           L ++  L +  NSL+G+IP+ I N  A+ A     +  SG   ++ G             
Sbjct: 695 LTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQLSGPLPSTIGK------------ 742

Query: 382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQS-LNLSHNLFTGRIPDNIGVMR 440
                    L+ +  + +S+N  +GEIPVE+  LQ LQS L+LS+N FTGRIP  I  + 
Sbjct: 743 ---------LSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTLP 793

Query: 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGN-DL 499
            +ESLD S NQL G++P  + ++  L YLNLS NNL G++    Q   + A +F GN  L
Sbjct: 794 KLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKL--KKQFSRWQADAFVGNAGL 851

Query: 500 CGAPLSNC 507
           CG+PLS+C
Sbjct: 852 CGSPLSHC 859

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  210 bits (535), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 290/616 (47%), Gaps = 82/616 (13%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           L L  +   G + + LG    L  L L++N + G +P S+G +  L  +   NN L+G +
Sbjct: 211 LSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLIELRVMSFENNSLSGNI 270

Query: 62  SEIHFLNLTQLLVFRAHGNSLV---------------FKINPN-WVPPFQLAFL---ELR 102
             I F NLT+L +F    N+                 F ++ N +  PF  + L    L 
Sbjct: 271 P-ISFANLTKLSIFVLSSNNFTSTFPFDMSIFHNLEYFDVSYNSFSGPFPKSLLLIPSLE 329

Query: 103 SCHL------GPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY 156
           S +L      GP       S  KL  L +   R+   IP    + +   + L++S N   
Sbjct: 330 SIYLQENQFTGPIEFANTSSSTKLQDLILGRNRLHGPIPESI-SRLLNLEELDISHNNFT 388

Query: 157 GGVPKFDSPSVPLI-----------TTPSLLGSI-------------------------F 180
           G +P   S  V L+             P+ L  +                          
Sbjct: 389 GAIPPTISKLVNLLHLDLSKNNLEGEVPACLWRLNTMVLSHNSFSSFENTSQEEALIEEL 448

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWP-RLRMLNLGNNNF 239
           DL++N+  G I ++IC+      ++ FL LS N FS  IP C  N+   ++ LNLG+NNF
Sbjct: 449 DLNSNSFQGPIPYMICK----LSSLGFLDLSNNLFSGSIPSCIRNFSGSIKELNLGDNNF 504

Query: 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
           +G+LP        L+SL++ +N+L G  P S  N   L+ +++  N++    P+W+ E+ 
Sbjct: 505 SGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELVNVESNKIKDIFPSWL-ESL 563

Query: 300 SRLMILNLRSNKFHGDFPIQLCRLG--SLQILDVAYNSLSGTIP-RCINNFSAMAT-TDS 355
             L +LNLRSNKF+G    +   +G  SL+I+D+++N+ SGT+P    +N+  M T T+ 
Sbjct: 564 PSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGTLPPYYFSNWKDMTTLTEE 623

Query: 356 SDPNSGIF--YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT 413
            D     F  YA S  +E+     +V KG  + +  I    R+ID S N  +G IP  + 
Sbjct: 624 MDQYMTEFWRYADSYYHEME----MVNKGVDMSFERIRRDFRAIDFSGNKINGNIPESLG 679

Query: 414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
            L+ L+ LNLS N FT  IP  +  +  +E+LD S N+LSGQIPQ ++ LSFL+Y+N S+
Sbjct: 680 YLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNKLSGQIPQDLAALSFLSYMNFSH 739

Query: 474 NNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDEDGVDW 533
           N L G +P  TQ Q    SSF  N         C +   L P  +      + +E+  +W
Sbjct: 740 NLLQGPVPRGTQFQRQKCSSFLDNPGLYGLEDICRDTGALNPTSQLPEDLSEAEENMFNW 799

Query: 534 LLYISMALGFVVGFWC 549
              ++ A+ +  G  C
Sbjct: 800 ---VAAAIAYGPGVLC 812

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  203 bits (516), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 180/557 (32%), Positives = 269/557 (48%), Gaps = 90/557 (16%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           L L  +Q  G +  +L + ++L+ LDLSNN++ G IP +L ++  L  L L NN L GT+
Sbjct: 341 LVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTL 400

Query: 62  S---------------------------------EIHFL--------------NLTQLLV 74
           S                                 E+ FL              N T L +
Sbjct: 401 SPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKM 460

Query: 75  FRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKI 134
               GN    +I P+     +L  L LR   L    P  L +  +L  LD++  ++S  I
Sbjct: 461 IDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNCHQLNILDLADNQLSGSI 520

Query: 135 PR--GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIF 192
           P   GF   + Q    N   N + G +P  DS    LI+  +L  +  +LS+N L+G+I 
Sbjct: 521 PSSFGFLKGLEQLMLYN---NSLQGNLP--DS----LISLRNL--TRINLSHNRLNGTI- 568

Query: 193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS 252
           H +C   ++   + F  ++ N F ++IP    N   L  L LG N  TG +P ++G +  
Sbjct: 569 HPLCGSSSY---LSF-DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRE 624

Query: 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF 312
           L  L++ +N L+G IP        L  +D+  N L G IP W+G+  S+L  L L SN+F
Sbjct: 625 LSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGK-LSQLGELKLSSNQF 683

Query: 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEI 372
               P +L     L +L +  NSL+G+IP+ I N  A+   +  D N             
Sbjct: 684 VESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNL-DKNQ------------ 730

Query: 373 VEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQS-LNLSHNLFTGR 431
                    G L +    L+ +  + +S+N+ +GEIPVE+  LQ LQS L+LS+N FTG 
Sbjct: 731 -------FSGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query: 432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGA 491
           IP  IG +  +E+LD S NQL+G++P S+ ++  L YLN+S NNL G++    Q   + A
Sbjct: 784 IPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKL--KKQFSRWPA 841

Query: 492 SSFAGND-LCGAPLSNC 507
            SF GN  LCG+PLS C
Sbjct: 842 DSFLGNTGLCGSPLSRC 858

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  199 bits (506), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 177/571 (30%), Positives = 260/571 (45%), Gaps = 80/571 (14%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           SL L  +   G +  ++G   +L  L+L +N + G IP  LG +  L+ L +  NKL  +
Sbjct: 244 SLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSS 303

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           +    F  LTQL       N LV  I+        L  L L S +    FP  + + + L
Sbjct: 304 IPSSLF-RLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNFTGEFPQSITNLRNL 362

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180
             L +    IS ++P      +     L+   N + G +P   S    L         + 
Sbjct: 363 TVLTVGFNNISGELPADL-GLLTNLRNLSAHDNLLTGPIPSSISNCTGL--------KLL 413

Query: 181 DLSNNALSGSIFHLICQGENFSK-NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
           DLS+N ++G I         F + N+ F+ + +NHF+ +IPD   N   L  L++ +NN 
Sbjct: 414 DLSHNQMTGEI------PRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNL 467

Query: 240 TGSL------------------------PMSIGALNSLMSLNLRNNRLSGIIPTSFRNLS 275
           TG+L                        P  IG L  L  L L +N  +G IP    NL+
Sbjct: 468 TGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNLT 527

Query: 276 ILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335
           +L+ L M  N+L G IP  + +    L +L+L +NKF G  P    +L SL  L +  N 
Sbjct: 528 LLQGLRMYSNDLEGPIPEEMFD-MKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNK 586

Query: 336 LSGTIPRCINNFSAMATTDSSD-------PN--------------------SGIFYASSG 368
            +G+IP  + + S + T D SD       P                     +G      G
Sbjct: 587 FNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTIPKELG 646

Query: 369 DNEIVEDALLVTKGFLVEYNSILNLVR---SIDISKNNFSGEIPVEVTNLQGLQ---SLN 422
             E+V++  L    F       L   +   ++D S+NN SG IP EV   QG+    SLN
Sbjct: 647 KLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEV--FQGMDMIISLN 704

Query: 423 LSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482
           LS N F+G IP + G M  + SLD S+N L+G+IP+S++NLS L +L L++NNL G +P 
Sbjct: 705 LSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPE 764

Query: 483 STQLQSFGASSFAGN-DLCGA--PLSNCTEK 510
           S   ++  AS   GN DLCG+  PL  CT K
Sbjct: 765 SGVFKNINASDLMGNTDLCGSKKPLKPCTIK 795

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  192 bits (487), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 181/596 (30%), Positives = 269/596 (45%), Gaps = 79/596 (13%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
           G L + +    +L  L  S N + G IP + G +  LE L LSNN  +GTV    F N T
Sbjct: 224 GTLPSAISNCSSLVHLSASENEIGGVIPAAYGALPKLEVLSLSNNNFSGTVPFSLFCN-T 282

Query: 71  QLLVFRAHGNSLVFKINPNWVPPFQ--LAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
            L + +   N+    + P      +  L  L+L+   +  RFPLWL +   L  LD+S  
Sbjct: 283 SLTIVQLGFNAFSDIVRPETTANCRTGLQVLDLQENRISGRFPLWLTNILSLKNLDVSGN 342

Query: 129 RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS 188
             S +IP    N + + + L ++ N + G +P      V +    SL   + D   N+L 
Sbjct: 343 LFSGEIPPDIGN-LKRLEELKLANNSLTGEIP------VEIKQCGSL--DVLDFEGNSLK 393

Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG 248
           G I   +     + K ++ L L +N FS  +P   +N  +L  LNLG NN  GS P+ + 
Sbjct: 394 GQIPEFL----GYMKALKVLSLGRNSFSGYVPSSMVNLQQLERLNLGENNLNGSFPVELM 449

Query: 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
           AL SL  L+L  NR SG +P S  NLS L  L++  N   G IP  +G  F +L  L+L 
Sbjct: 450 ALTSLSELDLSGNRFSGAVPVSISNLSNLSFLNLSGNGFSGEIPASVGNLF-KLTALDLS 508

Query: 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTD-SSDPNSGIFYASS 367
                G+ P++L  L ++Q++ +  N+ SG +P   ++  ++   + SS+  SG    + 
Sbjct: 509 KQNMSGEVPVELSGLPNVQVIALQGNNFSGVVPEGFSSLVSLRYVNLSSNSFSGEIPQTF 568

Query: 368 G-----------DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQ 416
           G           DN I         G +       + +  +++  N   G IP +++ L 
Sbjct: 569 GFLRLLVSLSLSDNHI--------SGSIPPEIGNCSALEVLELRSNRLMGHIPADLSRLP 620

Query: 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            L+ L+L  N  +G IP  I    S+ SL    N LSG IP S S LS L  ++LS NNL
Sbjct: 621 RLKVLDLGQNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNL 680

Query: 477 NGEIPSSTQL--------------------QSFGA-----SSFAGN-DLCGAPLSNCTEK 510
            GEIP+S  L                     S G+     S F+GN +LCG PL+   E 
Sbjct: 681 TGEIPASLALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCE- 739

Query: 511 NILIPEDENGSGNEDDDEDGVDWLLYISMAL--GFVVG-FWCFIGPLLIKRRWRYK 563
                     S   +  +     +L I MA    F++  F CF    L+K  WR K
Sbjct: 740 ----------SSTAEGKKKKRKMILMIVMAAIGAFLLSLFCCFYVYTLLK--WRKK 783

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZPS9|BRL2_ARATH Serine/threonine-protein kinase BRI1-like 2 OS=Arabidopsis thaliana GN=BRL2 PE=1 SV=1

 Score =  188 bits (478), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 176/596 (29%), Positives = 254/596 (42%), Gaps = 97/596 (16%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
           G++++ L     L++L+LS N  +G IP S G++  L+ LDLS+N+L G           
Sbjct: 218 GYISDSLINCTNLKSLNLSYNNFDGQIPKSFGELKLLQSLDLSHNRLTG----------- 266

Query: 71  QLLVFRAHGNSLVFKINPNWVPP------FQLAFLELRSCHLGPRFPLWLQSQKKLYYLD 124
                              W+PP        L  L L   +     P  L S   L  LD
Sbjct: 267 -------------------WIPPEIGDTCRSLQNLRLSYNNFTGVIPESLSSCSWLQSLD 307

Query: 125 ISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSN 184
           +S+  IS   P     S      L +S N I G  P   S    L         I D S+
Sbjct: 308 LSNNNISGPFPNTILRSFGSLQILLLSNNLISGDFPTSISACKSL--------RIADFSS 359

Query: 185 NALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL---------- 234
           N  SG I   +C G   + ++E L+L  N  + +IP        LR ++L          
Sbjct: 360 NRFSGVIPPDLCPG---AASLEELRLPDNLVTGEIPPAISQCSELRTIDLSLNYLNGTIP 416

Query: 235 ---GN-----------NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL 280
              GN           NN  G +P  IG L +L  L L NN+L+G IP  F N S ++ +
Sbjct: 417 PEIGNLQKLEQFIAWYNNIAGEIPPEIGKLQNLKDLILNNNQLTGEIPPEFFNCSNIEWV 476

Query: 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTI 340
               N L G +P   G   SRL +L L +N F G+ P +L +  +L  LD+  N L+G I
Sbjct: 477 SFTSNRLTGEVPKDFG-ILSRLAVLQLGNNNFTGEIPPELGKCTTLVWLDLNTNHLTGEI 535

Query: 341 P-RCINNFSAMATTDSSDPNSGIFYASSGDN----------------EIVEDALLVTKGF 383
           P R      + A +     N+  F  + G++                 +++   L +  F
Sbjct: 536 PPRLGRQPGSKALSGLLSGNTMAFVRNVGNSCKGVGGLVEFSGIRPERLLQIPSLKSCDF 595

Query: 384 LVEYNS-ILNL------VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436
              Y+  IL+L      +  +D+S N   G+IP E+  +  LQ L LSHN  +G IP  I
Sbjct: 596 TRMYSGPILSLFTRYQTIEYLDLSYNQLRGKIPDEIGEMIALQVLELSHNQLSGEIPFTI 655

Query: 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAG 496
           G ++++   D S N+L GQIP+S SNLSFL  ++LSNN L G IP   QL +  A+ +A 
Sbjct: 656 GQLKNLGVFDASDNRLQGQIPESFSNLSFLVQIDLSNNELTGPIPQRGQLSTLPATQYAN 715

Query: 497 N-DLCGAPLSNCTEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFI 551
           N  LCG PL  C   N  +P                 W   I + +       C +
Sbjct: 716 NPGLCGVPLPECKNGNNQLPAGTEEGKRAKHGTRAASWANSIVLGVLISAASVCIL 771

Receptor with a serine/threonine-protein kinase activity, which may transduce extracellular spatial and temporal signals into downstream cell differentiation responses in provascular and procambial cells. In contrast to BRI1, BRL1 and BRL3, it does not bind brassinolide.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1

 Score =  181 bits (459), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 157/505 (31%), Positives = 242/505 (47%), Gaps = 69/505 (13%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           L L  +  YG +   + + K L  L+L NN + GP+P +L QI NL+ LDL+ N L G +
Sbjct: 124 LDLSENLLYGDIPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEI 183

Query: 62  SEIHFLN-LTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           S + + N + Q L  R  GN L   ++ +      L + ++R  +L    P  + +    
Sbjct: 184 SRLLYWNEVLQYLGLR--GNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSF 241

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180
             LDIS  +I+ +IP        Q   L++ GN++ G +P+       L        ++ 
Sbjct: 242 QILDISYNQITGEIPYNI--GFLQVATLSLQGNRLTGRIPEVIGLMQAL--------AVL 291

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEF---LKLSKNHFSEDIPDCWMNWPRLRMLNLGNN 237
           DLS+N L G I  ++        N+ F   L L  N  +  IP    N  RL  L L +N
Sbjct: 292 DLSDNELVGPIPPIL-------GNLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDN 344

Query: 238 NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
              G++P  +G L  L  LNL NNRL G IP++  + + L   ++  N L G+IP     
Sbjct: 345 KLVGTIPPELGKLEQLFELNLANNRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAF-R 403

Query: 298 TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357
               L  LNL SN F G  P++L  + +L  LD++ N+ SG+IP  +             
Sbjct: 404 NLGSLTYLNLSSNNFKGKIPVELGHIINLDKLDLSGNNFSGSIPLTL------------- 450

Query: 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG 417
                     GD               +E+  ILNL      S+N+ SG++P E  NL+ 
Sbjct: 451 ----------GD---------------LEHLLILNL------SRNHLSGQLPAEFGNLRS 479

Query: 418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           +Q +++S NL +G IP  +G ++++ SL  + N+L G+IP  ++N   L  LN+S NNL+
Sbjct: 480 IQMIDVSFNLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLS 539

Query: 478 GEIPSSTQLQSFGASSFAGND-LCG 501
           G +P       F  +SF GN  LCG
Sbjct: 540 GIVPPMKNFSRFAPASFVGNPYLCG 564

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  177 bits (448), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 164/524 (31%), Positives = 242/524 (46%), Gaps = 46/524 (8%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           + L  ++F G +  ++    +L  L L  N + GPIP  LG + +LE+L L  N LNGT+
Sbjct: 246 VILWENEFSGFIPREISNCTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTI 305

Query: 62  SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY 121
                 NL+  +      N+L  +I         L  L L    L    P+ L + K L 
Sbjct: 306 PR-EIGNLSYAIEIDFSENALTGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLS 364

Query: 122 YLDISSTRISAKIPRGFW--NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
            LD+S   ++  IP GF     +F    L +  N + G +P       P +   S L  +
Sbjct: 365 KLDLSINALTGPIPLGFQYLRGLFM---LQLFQNSLSGTIP-------PKLGWYSDLW-V 413

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
            D+S+N LSG I   +C       N+  L L  N+ S +IP        L  L L  NN 
Sbjct: 414 LDMSDNHLSGRIPSYLC----LHSNMIILNLGTNNLSGNIPTGITTCKTLVQLRLARNNL 469

Query: 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
            G  P ++    ++ ++ L  NR  G IP    N S L+ L + +N   G +P  IG   
Sbjct: 470 VGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCSALQRLQLADNGFTGELPREIG-ML 528

Query: 300 SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
           S+L  LN+ SNK  G+ P ++     LQ LD+  N+ SGT+P  + +   +     S+ N
Sbjct: 529 SQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNFSGTLPSEVGSLYQLELLKLSNNN 588

Query: 360 -SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGL 418
            SG    + G+                     L+ +  + +  N F+G IP E+ +L GL
Sbjct: 589 LSGTIPVALGN---------------------LSRLTELQMGGNLFNGSIPRELGSLTGL 627

Query: 419 Q-SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           Q +LNLS+N  TG IP  +  +  +E L  + N LSG+IP S +NLS L   N S N+L 
Sbjct: 628 QIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLT 687

Query: 478 GEIPSSTQLQSFGASSFAGND-LCGAPLSNCTEKNILIPEDENG 520
           G IP    L++   SSF GN+ LCG PL+ C +     P    G
Sbjct: 688 GPIP---LLRNISMSSFIGNEGLCGPPLNQCIQTQPFAPSQSTG 728

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  176 bits (447), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 158/511 (30%), Positives = 233/511 (45%), Gaps = 67/511 (13%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           L L  + F G +  ++G+   ++ L L  N + G IP  +G + +   +D S N+L G +
Sbjct: 264 LALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAEIDFSENQLTGFI 323

Query: 62  SEI--HFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKK 119
            +   H LNL  L +F                           +  LGP  P  L     
Sbjct: 324 PKEFGHILNLKLLHLFE--------------------------NILLGP-IPRELGELTL 356

Query: 120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
           L  LD+S  R++  IP+      +  D L +  NQ+ G +P       PLI   S   S+
Sbjct: 357 LEKLDLSINRLNGTIPQELQFLPYLVD-LQLFDNQLEGKIP-------PLIGFYSNF-SV 407

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
            D+S N+LSG I    C+ +        L L  N  S +IP        L  L LG+N  
Sbjct: 408 LDMSANSLSGPIPAHFCRFQTLI----LLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQL 463

Query: 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
           TGSLP+ +  L +L +L L  N LSG I      L  L+ L +  N   G IP  IG   
Sbjct: 464 TGSLPIELFNLQNLTALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIG-NL 522

Query: 300 SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
           ++++  N+ SN+  G  P +L    ++Q LD++ N  SG I + +     +     SD  
Sbjct: 523 TKIVGFNISSNQLTGHIPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNR 582

Query: 360 -SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGL 418
            +G    S GD                     L  +  + +  N  S  IPVE+  L  L
Sbjct: 583 LTGEIPHSFGD---------------------LTRLMELQLGGNLLSENIPVELGKLTSL 621

Query: 419 Q-SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           Q SLN+SHN  +G IPD++G ++ +E L  + N+LSG+IP S+ NL  L   N+SNNNL 
Sbjct: 622 QISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSGEIPASIGNLMSLLICNISNNNLV 681

Query: 478 GEIPSSTQLQSFGASSFAGND-LCGAPLSNC 507
           G +P +   Q   +S+FAGN  LC +  S+C
Sbjct: 682 GTVPDTAVFQRMDSSNFAGNHGLCNSQRSHC 712

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1

 Score =  176 bits (446), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 151/498 (30%), Positives = 234/498 (46%), Gaps = 69/498 (13%)

Query: 9   FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLN 68
            +G +   + + K L  L+L NN + GPIP +L QI NL+ LDL+ N+L G +  + + N
Sbjct: 133 LFGDIPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWN 192

Query: 69  -LTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISS 127
            + Q L  R  GN L   ++P+      L + ++R  +L    P  + +      LD+S 
Sbjct: 193 EVLQYLGLR--GNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPESIGNCTSFEILDVSY 250

Query: 128 TRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNAL 187
            +I+  IP        Q   L++ GN++ G +P+       L        ++ DLS+N L
Sbjct: 251 NQITGVIPYNI--GFLQVATLSLQGNKLTGRIPEVIGLMQAL--------AVLDLSDNEL 300

Query: 188 SGSIFHLICQGENFSKNIEF---LKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP 244
           +G I  ++        N+ F   L L  N  +  IP    N  RL  L L +N   G +P
Sbjct: 301 TGPIPPIL-------GNLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIP 353

Query: 245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI 304
             +G L  L  LNL NN L G+IP++  + + L   ++  N L G +P         L  
Sbjct: 354 PELGKLEQLFELNLANNNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEF-RNLGSLTY 412

Query: 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364
           LNL SN F G  P +L  + +L  LD++ N+ SG+IP  +                    
Sbjct: 413 LNLSSNSFKGKIPAELGHIINLDTLDLSGNNFSGSIPLTL-------------------- 452

Query: 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLS 424
              GD               +E+  ILNL      S+N+ +G +P E  NL+ +Q +++S
Sbjct: 453 ---GD---------------LEHLLILNL------SRNHLNGTLPAEFGNLRSIQIIDVS 488

Query: 425 HNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
            N   G IP  +G +++I SL  + N++ G+IP  ++N   L  LN+S NNL+G IP   
Sbjct: 489 FNFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMK 548

Query: 485 QLQSFGASSFAGND-LCG 501
               F  +SF GN  LCG
Sbjct: 549 NFTRFSPASFFGNPFLCG 566

Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
224072885	1024	predicted protein [Populus trichocarpa]	0.951	0.553	0.490	1e-147
315436720	1020	verticillium wilt resistance-like protei	0.951	0.555	0.500	1e-145
255547794	909	serine-threonine protein kinase, plant-t	0.947	0.621	0.478	1e-141
350284759	980	receptor-like protein [Malus micromalus]	0.961	0.584	0.459	1e-140
350284741	982	receptor-like protein [Malus x domestica	0.944	0.573	0.464	1e-140
255539443	1054	serine-threonine protein kinase, plant-t	0.922	0.521	0.479	1e-140
209970618	967	M18-S3Bp [Malus floribunda]	0.958	0.590	0.458	1e-139
209970607	1045	M18S-3Ap [Malus floribunda]	0.964	0.550	0.467	1e-139
350284751	980	receptor-like protein [Malus baccata]	0.937	0.570	0.461	1e-139
350284749	980	receptor-like protein [Malus baccata]	0.937	0.570	0.461	1e-139

>gi|224072885|ref|XP_002303927.1| predicted protein [Populus trichocarpa] gi|222841359|gb|EEE78906.1| predicted protein [Populus trichocarpa]

 Score =  530 bits (1365), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 304/620 (49%), Positives = 406/620 (65%), Gaps = 53/620 (8%)

Query: 1    SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            SL L     +G LTN LG+F+ L  L L +N+++GPIP++LG++ +L  L LS+NKLNGT
Sbjct: 414  SLDLAGCLLFGQLTNHLGKFRNLAYLGLRSNSISGPIPMALGELVSLRSLVLSDNKLNGT 473

Query: 61   ------------------------VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQL 96
                                    VSE+HF NL  L  F A GN L  +++P+W+PP QL
Sbjct: 474  LPKSFGELTKLEEMDISHNLFQGEVSEVHFANLKNLRNFSAAGNQLNLRVSPDWIPP-QL 532

Query: 97   AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY 156
             F++LRS ++GP+FP W++  + L YLDIS++ IS+ IP  FW   F+ +YLN+S NQI 
Sbjct: 533  VFIDLRSWNVGPQFPKWVRPLEHLSYLDISNSSISSTIPIWFWTMSFRMEYLNLSHNQIQ 592

Query: 157  GGVP---KFD-SPSVPLITT---------PSLLGSI--FDLSNNALSGSIFHLICQGENF 201
            G +P   K D + S PL+           PS+  ++   DLSNN+ SGS+ + +C   + 
Sbjct: 593  GVIPSKLKLDFTASYPLVDLSSNQFKGPLPSIFSNVGALDLSNNSFSGSMLNFLCHKIDE 652

Query: 202  SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
             KN++ L L +N  S  IPDCW +W  L  + L NN  +G++P SIGAL+ L SL++RN+
Sbjct: 653  LKNMQVLNLGENLLSGVIPDCWSSWQYLVAIKLSNNKLSGNIPDSIGALSLLESLHIRNS 712

Query: 262  RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
             LSG +P S +N + L  LD+ ENELVG++P WIG+ FS +++LN+R+NKFHG  P +LC
Sbjct: 713  SLSGKLPISLKNCTKLITLDVAENELVGSMPAWIGKRFSSMVVLNMRANKFHGRIPRELC 772

Query: 322  RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
             L SLQILD+A+N LS +IP C N  SAMAT + S    G  Y  SG +   ++ LLV K
Sbjct: 773  NLASLQILDLAHNRLSWSIPTCFNKLSAMATRNDS---LGKIYLDSGSSTF-DNVLLVMK 828

Query: 382  GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441
            G +VEY++IL  VRSID+S N   GEIP EVT L  LQSLNLS N  TGRIP+ IG +R 
Sbjct: 829  GKVVEYSTILKFVRSIDLSSNALCGEIPEEVTRLSELQSLNLSQNSLTGRIPEGIGSLRY 888

Query: 442  IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCG 501
            +ES+DFS NQLSG+IPQSMS+L+FL++LNLS+N L G IPS TQLQSFG SSF+GN+LCG
Sbjct: 889  LESMDFSVNQLSGEIPQSMSDLTFLSHLNLSDNRLRGRIPSGTQLQSFGPSSFSGNELCG 948

Query: 502  APLS-NCTEKNILIPEDENGSGNEDDDEDGVD--WLLYISMALGFVVGFWCFIGPLLIKR 558
             PLS NC+  N    E E      ++D +G+   W  Y+SM LGF+VGFW  +GPL+  R
Sbjct: 949  PPLSKNCSVDNKFHVEHE-----REEDGNGLKGRW-FYVSMVLGFIVGFWGVVGPLMFNR 1002

Query: 559  RWRYKYCHFLDRLWDGCFVR 578
            RWRY Y HFLDRL D  + R
Sbjct: 1003 RWRYVYYHFLDRLRDQIWWR 1022

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315436720|gb|ADU18533.1| verticillium wilt resistance-like protein [Gossypium barbadense]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 294/587 (50%), Positives = 375/587 (63%), Gaps = 20/587 (3%)

Query: 2    LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
            L L R+   G +   LG   +LR LDLS N VNG +P S+GQ+  +E L LS+N L G V
Sbjct: 428  LSLSRNSISGSIPASLGLLASLRTLDLSQNRVNGTLPESIGQLWKMEKLWLSHNMLEGVV 487

Query: 62   SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY 121
            SE+HF NLT+L +F+A GN LV + +P WVPPFQL  + L S HLGP+FP WL+SQ+   
Sbjct: 488  SEVHFANLTRLRLFQASGNPLVLEASPEWVPPFQLGVMALSSWHLGPKFPSWLRSQRDFV 547

Query: 122  YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKF--DSPSVPLITT------- 172
            YLDIS T I    P  FWN    Y  LN+S NQIYG +P     SP   L+         
Sbjct: 548  YLDISVTGIIDTFPNWFWNLSTIYFSLNLSHNQIYGELPHRIGTSPVADLVYVDLSFNHF 607

Query: 173  ----PSLLGSI--FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW 226
                P L   +   DLS+N  SG I +L+C        +E L L+ NH S +IPDCWMNW
Sbjct: 608  DGPLPCLSSKVNTLDLSSNLFSGPISNLLCCKMEEPYWLETLHLADNHLSGEIPDCWMNW 667

Query: 227  PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
            P +  ++L NN+ +G +P S+G+LN L SL+LR N LSG++P+S +N + L A+D+GEN 
Sbjct: 668  PNMVSVDLENNSLSGVIPSSMGSLNLLQSLHLRKNNLSGVLPSSLQNCTSLLAIDLGENH 727

Query: 287  LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
             VGNIP WIGE  S  +I++L SN+F G  P  LC L  L ILD+A+N+LSGTIP+C  N
Sbjct: 728  FVGNIPGWIGEKLSDSIIISLGSNRFQGQIPDNLCSLSYLTILDLAHNNLSGTIPKCFMN 787

Query: 347  FSAMAT-TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
             SAMA   +SS+P   I YA       +E  LL+ KG L+EY+S L LV S+D+S NN +
Sbjct: 788  LSAMAANQNSSNP---ISYAFGHFGTSLETLLLMIKGILLEYSSTLQLVTSMDLSDNNLA 844

Query: 406  GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 465
            GEIP  +T+L GL+ LNLS+N   GRIP NIG +R +ES+D S NQL G+IP SMS L+F
Sbjct: 845  GEIPAGMTDLLGLRFLNLSNNQLKGRIPKNIGNLRLLESIDLSRNQLRGEIPPSMSALTF 904

Query: 466  LNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNED 525
            L+YLNLS NNL G+IPSSTQLQSF  SS+ GN LCG PL      +     D N + N +
Sbjct: 905  LSYLNLSENNLTGKIPSSTQLQSFDISSYDGNHLCGPPLLEICSTDATTSSDHNNNENNE 964

Query: 526  DDEDGVDWL-LYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRL 571
             D   VDWL  Y SMA GFVVGFW  +GPLL  + WR++Y   L+RL
Sbjct: 965  GDGLEVDWLWFYASMAFGFVVGFWVVMGPLLFNKSWRFRYFRILERL 1011

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255547794|ref|XP_002514954.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223546005|gb|EEF47508.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  509 bits (1312), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 285/595 (47%), Positives = 384/595 (64%), Gaps = 30/595 (5%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           SL+L  +   G +   LG   +LR L L NN +NG +P+SLG + NLE L +S+N L G 
Sbjct: 316 SLYLSSNSISGPIPLALGELMSLRYLYLDNNKLNGSMPVSLGGLTNLESLSISDNLLEGN 375

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPP-FQLAFLELRSCHLGPRFPLWLQSQKK 119
           VS+IHF  L +L  F A  N L+ +++ +W+PP   L  L+L S  +GP+FP WL   K 
Sbjct: 376 VSDIHFAKLIKLRYFDASENHLMLRVSSDWIPPPIHLQVLQLSSWAIGPQFPRWLSLLKS 435

Query: 120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK-------FDSPSVPLITT 172
           L  LD+S+++IS+ IP  FWNS  Q  YLN+S NQIYG +P        +   ++ L + 
Sbjct: 436 LAVLDLSNSKISSNIPFWFWNSSSQLFYLNLSHNQIYGNIPDIPYFSHYYYYSTIDLSSN 495

Query: 173 ------PSLLGSIFDL--SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM 224
                 P +  ++ DL  SNN  SGSI H +C+  +  K +  + L  N  S  I DCW 
Sbjct: 496 HFQGPLPHVSSNVTDLYLSNNLFSGSISHFVCRKIHKVKRMRLINLDNNFLSGQIRDCWS 555

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
           +W  L  + L NNNF+G++P SIG L  L SL+LRNN LSG IP S R+ + L +LD+GE
Sbjct: 556 SWSNLEYIRLSNNNFSGNIPRSIGTLTFLKSLHLRNNSLSGEIPLSLRDCTSLVSLDLGE 615

Query: 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCI 344
           N+L+G+IP W+G +F  +  LNLR NKFHG  P +LC+L SLQILD+A+N L+ TIP CI
Sbjct: 616 NQLIGHIPPWMGASFPSMAFLNLRENKFHGHIPPELCQLASLQILDLAHNDLARTIPSCI 675

Query: 345 NNFSAMATTDSSDPNSGI--FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN 402
           +  SAM T++ +    G    YAS+ D      A +V+KG +VEY SIL  V+S+D+S N
Sbjct: 676 DKLSAMTTSNPAASFYGYRSLYASASDY-----ATIVSKGRIVEYFSILGFVKSLDLSGN 730

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462
           N SG+IP  +T L GLQSLNLS NL +GRIP++IG M  +E++DFS NQL G+IPQSM+ 
Sbjct: 731 NLSGDIPEVLTKLIGLQSLNLSDNLLSGRIPEDIGAMVEVEAIDFSQNQLFGEIPQSMTK 790

Query: 463 LSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLS-NCTEKNILIPEDENG 520
           L++L+ LNLS+NNL+G IP+ TQLQSF ASSF GN  LCG PL+ NCT   +   +    
Sbjct: 791 LTYLSDLNLSDNNLSGTIPTGTQLQSFNASSFTGNKGLCGPPLTNNCTVPGV---QPRTE 847

Query: 521 SGNEDDDEDGVDWL--LYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWD 573
           S NE+   DG   +   Y+SMALGF+VGFW   GPL++ R+WR+ Y HFLD LWD
Sbjct: 848 SSNENRKSDGGFEVNGFYVSMALGFIVGFWGAFGPLVVNRQWRHAYFHFLDHLWD 902

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284759|gb|AEQ27751.1| receptor-like protein [Malus micromalus]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/623 (45%), Positives = 387/623 (62%), Gaps = 50/623 (8%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           SL L  +   G +++ +G  K+LR LDLSNN+++GPIP+SLG +++LE LD+S N+ NGT
Sbjct: 365 SLHLSHNALRGEISSSIGNLKSLRHLDLSNNSISGPIPMSLGNLSSLEKLDISVNQFNGT 424

Query: 61  ------------------------VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQL 96
                                   VSE+ F NL +L  F A GNS   K + +WVPPFQL
Sbjct: 425 FTEVIDQLKMLTDLDISYNSLEGVVSEVSFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQL 484

Query: 97  AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY 156
             L+L S HLGP++P+WL++Q +L  L +S T IS+ IP  FWN   Q +YLN+S NQ+Y
Sbjct: 485 EILQLDSWHLGPKWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTSQVEYLNLSRNQLY 544

Query: 157 GGVPKFDS--PSVPLITTPSLLGSI---------FDLSNNALSGSIFHLICQGENFSKNI 205
           G +    +   SV  +++    G++          DLS ++ S S+FH  C   +  K +
Sbjct: 545 GQIQNIVAGPSSVVDLSSNQFTGALPIVPTSLFFLDLSRSSFSESVFHFFCDRPDEPKQL 604

Query: 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSG 265
             L L  N  +  +PDCWM+W  LR LNL NNN TG++PMS+G L  L SL+LRNN L G
Sbjct: 605 SVLNLGNNLLTGKVPDCWMSWQHLRFLNLENNNLTGNVPMSMGYLQYLGSLHLRNNHLYG 664

Query: 266 IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS 325
            +P S +N + L  +D+ EN   G+IP WIG++ S L +LNLRSNKF GD P ++C L S
Sbjct: 665 ELPHSLQNCTWLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKS 724

Query: 326 LQILDVAYNSLSGTIPRCINNFSAMAT-TDSSDPNSGIFYASSGDNEIVEDALLVTKGFL 384
           LQILD+A+N LSG IPRC +N SA+A  ++S  P S   Y  +  +E+ E+A+LVTKG  
Sbjct: 725 LQILDLAHNKLSGMIPRCFHNLSALADFSESFYPTS---YWGTNWSELSENAILVTKGIE 781

Query: 385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES 444
           +EY+ IL  V+ +D+S N   GEIP E+T L  LQSLNLS+N FTGRIP NIG M  +E+
Sbjct: 782 MEYSRILGFVKVMDLSCNFMYGEIPEELTGLLALQSLNLSNNRFTGRIPSNIGNMAWLET 841

Query: 445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPL 504
           LDFS NQL G+IP SM+NL+FL++LNLS NNL G IP STQLQS   SSF GN LCGAPL
Sbjct: 842 LDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNKLCGAPL 901

Query: 505 -SNCTEKNILIPE--DENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWR 561
             NC+   ++ P   +++G G     ED  +W  Y+S+ +GF  GFW  +G LL+   W 
Sbjct: 902 NKNCSTNGVIPPPTVEQDGGGGYRLLED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPWS 958

Query: 562 YKYCHFLDRLWDGCFVRKCYQIF 584
                 L+R+     V K Y + 
Sbjct: 959 ILLSQLLNRI-----VLKMYHVI 976

Source: Malus micromalus

Species: Malus micromalus

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284741|gb|AEQ27742.1| receptor-like protein [Malus x domestica]

 Score =  504 bits (1299), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 286/616 (46%), Positives = 379/616 (61%), Gaps = 53/616 (8%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT---------- 60
           G +++ +G  K+LR  DLS N+++GPIP+SLG +++L  LD+S N+ NGT          
Sbjct: 374 GEISSSIGNLKSLRHFDLSGNSISGPIPMSLGNLSSLVELDISGNQFNGTLIEVIGELKM 433

Query: 61  --------------VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL 106
                         VSE+ F NL +L  F A  NSL  K +  W+PPFQL  L+L S  L
Sbjct: 434 LTDLDISYNSLEGVVSEVIFSNLKKLKFFSAQDNSLTLKTSRGWLPPFQLESLQLDSWRL 493

Query: 107 GPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPS 166
           GP +P+WLQ Q +L  L +S TRIS+ IP  FWN  FQ DYLN+S NQ+YG +    +  
Sbjct: 494 GPEWPMWLQKQTQLKKLSLSGTRISSTIPTWFWNLTFQLDYLNLSHNQLYGEIQNIVAAP 553

Query: 167 V------------PLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNH 214
           V             L   P+ L  + DLSN++ SGS+FH  C   +    +  L L  NH
Sbjct: 554 VSVADLGSNQFTGALPIVPTSLDRL-DLSNSSFSGSVFHFFCGRRDEPYQLSILHLENNH 612

Query: 215 FSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNL 274
            +  +PDCWMNWP L  L+L NNN TG++PMS+G L +L SL+LRNN L G +P S  N 
Sbjct: 613 LTGKVPDCWMNWPSLGFLHLENNNLTGNVPMSMGYLLNLQSLHLRNNHLYGELPHSLENC 672

Query: 275 SILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYN 334
           ++L  +D+  N  VG+IP W+G++ S L +LNLRSN+F GD P ++C L SLQILD+A N
Sbjct: 673 TMLSVVDLSGNGFVGSIPIWMGKSLSELQVLNLRSNEFEGDIPSEICYLKSLQILDLARN 732

Query: 335 SLSGTIPRCINNFSAMAT-TDSSDPNSGIFYASSGDNEI--VEDALLVTKGFLVEYNSIL 391
            LSGTIPRC +N SAMA  ++S  P   +F  S G  E   +E+A+LVTKG  +EY+ IL
Sbjct: 733 KLSGTIPRCFHNLSAMADLSESVWPT--MFSQSDGIMEFTNLENAVLVTKGREMEYSKIL 790

Query: 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
             V+ +D+S N   GEIP E+T+L  LQSLNLS+N FTGRIP  IG M  +ESLDFS NQ
Sbjct: 791 EFVKFMDLSCNFMYGEIPEELTDLLALQSLNLSNNRFTGRIPSKIGNMAQLESLDFSMNQ 850

Query: 452 LSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPL-SNCTEK 510
           L G+IPQSM+NL+FL++LNLS NNL G IP STQLQ    SSF GN+LCGAPL  NC+  
Sbjct: 851 LDGEIPQSMTNLTFLSHLNLSYNNLTGRIPESTQLQLLDQSSFVGNELCGAPLHKNCSPN 910

Query: 511 NILIPE--DENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFL 568
            ++ P   +++G G     ED   W  Y+S+ +GF  GFW  +G LL+   W       L
Sbjct: 911 GVIPPPTVEQDGGGGYSLLED--KW-FYMSLGVGFFTGFWIVLGSLLVNMPWSILLSQLL 967

Query: 569 DRLWDGCFVRKCYQIF 584
           +R+     V K Y + 
Sbjct: 968 NRI-----VLKMYHVI 978

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539443|ref|XP_002510786.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223549901|gb|EEF51388.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  504 bits (1297), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 294/613 (47%), Positives = 376/613 (61%), Gaps = 63/613 (10%)

Query: 9    FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIA----------------------- 45
            F GH+ N +G+  TL+ LDLS+N ++G IP S+G+++                       
Sbjct: 416  FSGHIGNAIGQLGTLQHLDLSDNFISGSIPESIGRLSSLIWAFLPNNQLTGTLPVTFRNL 475

Query: 46   -NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSC 104
             NL+ +D+S+N L G VSE+HF NLT L  F A  N LV K++P WVPPF+L  L LR  
Sbjct: 476  SNLQTIDISHNLLEGVVSEVHFTNLTSLTAFVASHNHLVLKVSPAWVPPFRLKELGLRYW 535

Query: 105  HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS 164
            +LGP+FP+WLQSQ    YLD+S T IS  IP  FWN      YLN+S NQI G +P   S
Sbjct: 536  NLGPQFPIWLQSQDYFTYLDLSCTEISDSIPTWFWNLTSHIKYLNLSHNQIPGQLPS--S 593

Query: 165  PSVPLITTPSLLG---------------SIFDLSNNALSGSIFHLICQGENFSKNIEFLK 209
             S+  +     LG               S  DLSNN  SGSI   +C       ++  L 
Sbjct: 594  LSIISMLPTIYLGFNQFKGPLPRFEADISALDLSNNFFSGSITRFLCYPTVVPYSLRILH 653

Query: 210  LSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPT 269
            L +N  S +IPDCWMNW  L ++ LGNNN TG +P SIG L +L SL LR N LSG IP 
Sbjct: 654  LGENQLSGEIPDCWMNWKSLTVIKLGNNNLTGKIPSSIGVLWNLRSLQLRKNSLSGEIPM 713

Query: 270  SFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQIL 329
            S  N + L  LD+  N+ VG +P W+G +F  L+ L+LRSN+  G+ P ++CRL SLQIL
Sbjct: 714  SLGNCTRLLTLDLAANDFVGKVPDWLGGSFPELLALSLRSNQLTGEIPSEICRLSSLQIL 773

Query: 330  DVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIV----EDALLVTKGFLV 385
            D A N+LSGT+P+CI N ++M T     P + IFY+S+G   +V    E+A +VTKG  V
Sbjct: 774  DFAGNNLSGTVPKCIANLTSMTTV---QPRTKIFYSSTGYYSLVEIFLENAYVVTKGKEV 830

Query: 386  EYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL 445
            EY+SIL LV+S+D+S N  SGEIP E+T L GL SLNLS N  TG+IP+NIG M  +ESL
Sbjct: 831  EYDSILTLVKSMDLSSNKISGEIPAELTALLGLMSLNLSGNDLTGQIPNNIGDMPVLESL 890

Query: 446  DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPL 504
            D S NQ+SG IP SM+   FLNYLNLS N+L+GEIPSSTQLQS  ASSF GN+ LCG PL
Sbjct: 891  DLSRNQISGNIPPSMAKSHFLNYLNLSYNDLSGEIPSSTQLQSQDASSFVGNNRLCGPPL 950

Query: 505  S-NCTEKNILIPEDE-NGSGNEDD----DEDGVDWLLYISMALGFVVGFWCFIGPLLIKR 558
            + +CT      P+D   GSGNE +    DE       Y+ + +G VVGFW   G LL  R
Sbjct: 951  AISCTVAE--TPQDTGKGSGNEGEGIKIDE------FYLGLTIGSVVGFWGVFGSLLYNR 1002

Query: 559  RWRYKYCHFLDRL 571
             WR+ Y  FLD++
Sbjct: 1003 SWRHAYFQFLDKV 1015

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970618|gb|ACJ03070.1| M18-S3Bp [Malus floribunda]

 Score =  503 bits (1295), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 287/626 (45%), Positives = 386/626 (61%), Gaps = 55/626 (8%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           SL L  +   G +++ +G  K+LR  DLS+N+++G IP+SLG I++LE LD+S N+ NGT
Sbjct: 352 SLDLSHNALRGEISSSIGNLKSLRHFDLSSNSISGRIPMSLGNISSLEQLDISVNQFNGT 411

Query: 61  ------------------------VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQL 96
                                   VSEI F NL +L  F A GNS   K + +WVPPFQL
Sbjct: 412 FTEVIGQLKMLTDLDISYNSLEGVVSEISFSNLIKLKNFVARGNSFTLKTSRDWVPPFQL 471

Query: 97  AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY 156
             L+L S HLGP +P+WL++Q +L  L +S T IS+ IP  FWN   Q DYLN+S NQ+Y
Sbjct: 472 EILQLDSWHLGPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTSQVDYLNLSHNQLY 531

Query: 157 GGVPKFDSPSVPLITT----------PSLLGSIF--DLSNNALSGSIFHLICQGENFSKN 204
           G +      + P +            P +  S+F  DLSN++ SGS+FH  C   +  K 
Sbjct: 532 GQIQNIFVGAFPSVVDLGSNQFTGALPIVATSLFWLDLSNSSFSGSVFHFFCDRPDEPKQ 591

Query: 205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS 264
           +E L L  N  +  +PDCWM+W  L  LNL NNN TG++PMS+G L  L SL+LRNN L 
Sbjct: 592 LEILHLGNNFLTGKVPDCWMSWQYLGFLNLENNNLTGNVPMSMGYLQDLESLHLRNNHLY 651

Query: 265 GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG 324
           G +P S +N + L  +D+ EN   G+IP WIG++ S L +L LRSNKF GD P ++C L 
Sbjct: 652 GELPHSLQNCTSLSVVDLSENGFSGSIPIWIGKSLSGLHVLILRSNKFEGDIPNEVCYLK 711

Query: 325 SLQILDVAYNSLSGTIPRCINNFSAMAT-TDSSDPNSGIFYASSGDNEIVEDALLVTKGF 383
           SLQILD+A+N LSG IPRC +N SA+A  ++S  P   IF + +G  E+ E+A+LVTKG 
Sbjct: 712 SLQILDLAHNKLSGMIPRCFHNLSALANFSESFSPR--IFGSVNG--EVWENAILVTKGT 767

Query: 384 LVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 443
            +EY+ IL   + +D+S N   GEIP E+T L  LQSLNLS+N FTGRIP  IG M  +E
Sbjct: 768 EMEYSKILGFAKGMDLSCNFMYGEIPKELTGLLALQSLNLSNNRFTGRIPSKIGDMAKLE 827

Query: 444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAP 503
           S+DFS NQL G+IP SM+NL+FL++LNLS NNL G IP STQLQS   SSF GN+LCGAP
Sbjct: 828 SVDFSMNQLDGEIPPSMTNLTFLSHLNLSYNNLTGRIPKSTQLQSLDQSSFLGNELCGAP 887

Query: 504 L-SNCTEKNILIPE--DENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRW 560
           L  NC+E  ++ P   + +G G     ED  +W  Y+S+ +GF  GFW  +G LL+   W
Sbjct: 888 LNKNCSENGVIPPPTVEHDGGGGYSLLED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPW 944

Query: 561 RYKYCHFLDRLWDGCFVRKCYQIFHV 586
                  L+R+         ++++HV
Sbjct: 945 SILLSQLLNRI--------VFKMYHV 962

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209970607|gb|ACJ03066.1| M18S-3Ap [Malus floribunda]

 Score =  503 bits (1294), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 281/601 (46%), Positives = 376/601 (62%), Gaps = 26/601 (4%)

Query: 1    SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            SL LR +   G +   LG   +L  LD+S N  NG     +GQ+  L  LD+SNN L   
Sbjct: 450  SLSLRYTNISGPIPMSLGNLSSLEKLDISGNQFNGTFTEVIGQLKMLTDLDISNNSLEDA 509

Query: 61   VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
            VSE+ F NLT+L  F A+GNS   K + +WVPPFQL  L+L S HLGP +P+WL++Q +L
Sbjct: 510  VSEVSFSNLTKLKHFIANGNSFTLKTSRDWVPPFQLEILQLDSWHLGPEWPMWLRTQTQL 569

Query: 121  YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLI---------T 171
              L +S T IS+ +P  FWN   +  YLN+S NQ+YG +    +  + ++          
Sbjct: 570  TRLSLSCTGISSTVPTWFWNLTSKVRYLNLSHNQLYGQIQNIVAGPMSVVDLSSNHFTGA 629

Query: 172  TPSLLGSIF--DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRL 229
             P +  S+F  DLSN++ SGS+FH  C   +  + + FL L  N  S  +PDCWM+W  L
Sbjct: 630  LPIVPTSLFWLDLSNSSFSGSVFHFFCDRPDEPRQLHFLHLGNNLLSGKVPDCWMSWQYL 689

Query: 230  RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
              LNL NNN TG++PMS+G L+ L SL+LRNN L G +P S +N + L  +D+GEN   G
Sbjct: 690  SFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQNCTRLSVVDLGENGFSG 749

Query: 290  NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSA 349
            +IP WIG++ S L ILNLRSNKF GD P ++C L SLQILD+A+N LSG IPRC +N SA
Sbjct: 750  SIPIWIGKSLSELQILNLRSNKFEGDIPNEVCYLTSLQILDLAHNKLSGMIPRCFHNLSA 809

Query: 350  MATTDSSDPNSGIFYASSGDN---EIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
            MA    S  ++ ++   +G +    +   A+LVTKG  +EY  IL  V+ +D+S N   G
Sbjct: 810  MADFSESR-DASVYVILNGISVPLSVTAKAILVTKGREMEYGKILKFVKFMDLSCNFMYG 868

Query: 407  EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 466
            EIP E+T+L  L+SLNLS+N FTGRIP  IG M  +ESLDFS NQL G+IPQSM+NL+FL
Sbjct: 869  EIPEELTDLLALKSLNLSNNHFTGRIPSKIGNMAQLESLDFSMNQLDGEIPQSMTNLTFL 928

Query: 467  NYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPL-SNCTEKNILIPE--DENGSGN 523
            ++LNLSNNNL G IP STQLQS   SSF GN+LCGAPL  NC+E  ++ P   + +G G 
Sbjct: 929  SHLNLSNNNLTGRIPKSTQLQSLDQSSFVGNELCGAPLNKNCSENGVIPPPTVEHDGGGG 988

Query: 524  EDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKCYQI 583
             +  ED  +W  Y+S+ +GF  GFW  +G LL+   W       L+R+     V K Y +
Sbjct: 989  YNLLED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLLNRI-----VLKMYHV 1040

Query: 584  F 584
             
Sbjct: 1041 I 1041

Source: Malus floribunda

Species: Malus floribunda

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284751|gb|AEQ27747.1| receptor-like protein [Malus baccata]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/615 (46%), Positives = 377/615 (61%), Gaps = 56/615 (9%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYL-------------------- 50
           G +++ +G  K+LR  DLS+N+++GPIP+SLG +++LE L                    
Sbjct: 375 GEISSSIGNLKSLRHFDLSSNSISGPIPMSLGNLSSLEKLYISENHFNGTFTEVIGQLKM 434

Query: 51  ----DLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL 106
               D+S N L G VSEI F NL +L  F A GNS   K + +WVPPFQL  L+L S HL
Sbjct: 435 LTDLDISYNSLEGVVSEISFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILKLDSWHL 494

Query: 107 GPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS-P 165
           GP +P+WL++Q +L  L +S T IS+ IP  FWN  F   YLN+S NQ+YG +    + P
Sbjct: 495 GPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTFHVQYLNLSHNQLYGQIQNIVAGP 554

Query: 166 S-------------VPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK 212
           S             +P++ T  +     DLSN++ SGS+FH  C   +  K +  L+L  
Sbjct: 555 SSAVDLSSNQFTGALPIVPTSLMW---LDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGN 611

Query: 213 NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272
           N  +  +PDCWM+WP L  LNL NNN TG++PMS+G L+ L SL+LRNN L G +P S +
Sbjct: 612 NFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQ 671

Query: 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332
           N + L  +D+ EN   G+IP WIG++ S L +LNLRSNKF GD P ++C L SLQILD+A
Sbjct: 672 NCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLA 731

Query: 333 YNSLSGTIPRCINNFSAMAT-TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL 391
           +N LSG IPRC +N SAMA  + S  P S     +SG   + E+A+LVTKG  +EY  IL
Sbjct: 732 HNELSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG---LTENAILVTKGMEMEYTKIL 788

Query: 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
             V+ +D+S N   GEIP E+T L  LQ LNLS+N FTGRIP  IG M  +ESLDFS NQ
Sbjct: 789 GFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKIGSMAQLESLDFSMNQ 848

Query: 452 LSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPL-SNCTEK 510
           L G+IP SM+ L+FL++LNLS NNL G IP STQLQS   SSF GN+LCGAPL  NC+E 
Sbjct: 849 LDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSEN 908

Query: 511 NILIPE--DENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFL 568
            ++ P   + +G G     ED  +W  Y+S+ +GF  GFW  +G LL+   W       L
Sbjct: 909 GVIPPPTVEHDGGGGYSLVED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLL 965

Query: 569 DRLWDGCFVRKCYQI 583
           +R+     V K Y +
Sbjct: 966 NRI-----VLKMYHV 975

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350284749|gb|AEQ27746.1| receptor-like protein [Malus baccata]

 Score =  501 bits (1291), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 284/615 (46%), Positives = 377/615 (61%), Gaps = 56/615 (9%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYL-------------------- 50
           G +++ +G  K+LR  DLS+N+++GPIP+SLG +++LE L                    
Sbjct: 375 GEISSSIGNLKSLRHFDLSSNSISGPIPMSLGNLSSLEKLYISENHFNGTFTEAIGQLKM 434

Query: 51  ----DLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL 106
               D+S N L G VSEI F NL +L  F A GNS   K + +WVPPFQL  L+L S HL
Sbjct: 435 LTDLDISYNSLEGVVSEISFSNLIKLKHFVAKGNSFTLKTSRDWVPPFQLEILKLDSWHL 494

Query: 107 GPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS-P 165
           GP +P+WL++Q +L  L +S T IS+ IP  FWN  F   YLN+S NQ+YG +    + P
Sbjct: 495 GPEWPMWLRTQTQLKELSLSGTGISSTIPTWFWNLTFHVQYLNLSHNQLYGQIQNIVAGP 554

Query: 166 S-------------VPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK 212
           S             +P++ T  +     DLSN++ SGS+FH  C   +  K +  L+L  
Sbjct: 555 SSAVDLSSNQFTGALPIVPTSLMW---LDLSNSSFSGSVFHFFCDRPDEPKQLGILRLGN 611

Query: 213 NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272
           N  +  +PDCWM+WP L  LNL NNN TG++PMS+G L+ L SL+LRNN L G +P S +
Sbjct: 612 NFLTGKVPDCWMSWPSLAFLNLENNNLTGNVPMSMGYLDWLESLHLRNNHLYGELPHSLQ 671

Query: 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332
           N + L  +D+ EN   G+IP WIG++ S L +LNLRSNKF GD P ++C L SLQILD+A
Sbjct: 672 NCTSLSVVDLSENGFSGSIPIWIGKSLSGLNVLNLRSNKFEGDIPNEVCYLKSLQILDLA 731

Query: 333 YNSLSGTIPRCINNFSAMAT-TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL 391
           +N LSG IPRC +N SAMA  + S  P S     +SG   + E+A+LVTKG  +EY  IL
Sbjct: 732 HNKLSGMIPRCFHNLSAMANFSQSFSPTSFWGMVASG---LTENAILVTKGMEMEYTKIL 788

Query: 392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
             V+ +D+S N   GEIP E+T L  LQ LNLS+N FTGRIP  IG M  +ESLDFS NQ
Sbjct: 789 GFVKGMDLSCNFMYGEIPEELTGLLALQYLNLSNNRFTGRIPSKIGSMAQLESLDFSMNQ 848

Query: 452 LSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPL-SNCTEK 510
           L G+IP SM+ L+FL++LNLS NNL G IP STQLQS   SSF GN+LCGAPL  NC+E 
Sbjct: 849 LDGEIPPSMTILTFLSHLNLSYNNLTGRIPESTQLQSLDQSSFVGNELCGAPLNKNCSEN 908

Query: 511 NILIPE--DENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFL 568
            ++ P   + +G G     ED  +W  Y+S+ +GF  GFW  +G LL+   W       L
Sbjct: 909 GVIPPPTVEHDGGGGYSLVED--EW-FYVSLGVGFFTGFWIVLGSLLVNMPWSILLSQLL 965

Query: 569 DRLWDGCFVRKCYQI 583
           +R+     V K Y +
Sbjct: 966 NRI-----VLKMYHV 975

Source: Malus baccata

Species: Malus baccata

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	596
TAIR|locus:2078102	875	RLP33 "receptor like protein 3	0.899	0.612	0.31	8.9e-55
TAIR|locus:2078112	868	RLP32 "receptor like protein 3	0.882	0.605	0.308	3.9e-53
TAIR|locus:2074633	943	RLP35 "AT3G11080" [Arabidopsis	0.901	0.569	0.303	2.2e-51
TAIR|locus:2119535	725	RLP48 "receptor like protein 4	0.843	0.693	0.295	2.8e-51
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.907	0.730	0.294	1.7e-50
TAIR|locus:2046397	589	RLP22 "receptor like protein 2	0.800	0.809	0.315	5.8e-50
TAIR|locus:2055772	983	RLP19 "receptor like protein 1	0.889	0.539	0.285	3.8e-49
TAIR|locus:2173777	792	RLP54 "receptor like protein 5	0.828	0.623	0.315	1.2e-48
TAIR|locus:2180587	811	RLP52 "receptor like protein 5	0.812	0.596	0.314	2.4e-48
TAIR|locus:2094603	835	RLP37 "receptor like protein 3	0.909	0.649	0.303	7.9e-48

TAIR|locus:2078102 RLP33 "receptor like protein 33" [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 8.9e-55, P = 8.9e-55
 Identities = 186/600 (31%), Positives = 276/600 (46%)

Query:     2 LFLRRSQFYGHLT-NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
             +FL  +Q  G L    +     L  L L  N + GPIP S+ ++ NL  LDLS+  + G 
Sbjct:   284 IFLDNNQLSGTLEFGNISSPSNLLVLQLGGNNLRGPIPTSISRLVNLRTLDLSHFNIQGQ 343

Query:    61 VSEIHFLNLTQL-LVFRAHGNSLV----------FK------INPNWV----------PP 93
             V    F +L  L  ++ +H N+            FK      ++ N V          PP
Sbjct:   344 VDFNIFSHLKLLGNLYLSHSNTTTTIDLNAVLSCFKMLISLDLSGNHVLVTNKSSVSDPP 403

Query:    94 FQL-AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSG 152
               L   L L  C +   FP  L++Q+++  LDIS+ +I  ++P   W  + Q +Y+++S 
Sbjct:   404 LGLIGSLNLSGCGI-TEFPDILRTQRQMRTLDISNNKIKGQVPS--W-LLLQLEYMHISN 459

Query:   153 NQIYG--GVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKL 210
             N   G     K +   VP    PS+    F  SNN  SG I   IC      +++  L L
Sbjct:   460 NNFIGFERSTKLEKTVVP---KPSM--KHFFGSNNNFSGKIPSFICS----LRSLIILDL 510

Query:   211 SKNHFSEDIPDCWMNWPR-LRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPT 269
             S N+FS  IP C   +   L  LNL  N  +GSLP +I                 G +P 
Sbjct:   511 SNNNFSGAIPPCVGKFKSTLSDLNLRRNRLSGSLPKTI--IKSLRSLDVSHNELEGKLPR 568

Query:   270 SFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQIL 329
             S  + S L+ L++  N +    P W+  +  +L +L LRSN FHG   I   R   L+I+
Sbjct:   569 SLIHFSTLEVLNVESNRINDTFPFWLS-SLKKLQVLVLRSNAFHGR--IHKTRFPKLRII 625

Query:   330 DVAYNSLSGTIPR-CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388
             D++ N  +GT+P  C   ++ M + + ++      Y  SG     +  +L+ KG  +E  
Sbjct:   626 DISRNHFNGTLPSDCFVEWTGMHSLEKNEDRFNEKYMGSGYYH--DSMVLMNKGLEMELV 683

Query:   389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFS 448
              IL +  ++D S N F GEIP  +  L+ L  LNLS N FTG IP ++G +R +ESLD S
Sbjct:   684 RILKIYTALDFSGNKFEGEIPRSIGLLKELHILNLSSNGFTGHIPSSMGNLRELESLDVS 743

Query:   449 ANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSNC 507
              N+LSG+IPQ +                 G++P  TQ ++  ASSF  N  LCG PL  C
Sbjct:   744 RNKLSGEIPQELGNLSYLAYMNFSHNQLVGQVPGGTQFRTQSASSFEENLGLCGRPLEEC 803

Query:   508 TEKNILIPXXXXXXXXXXXXXXXXXWLLYISMALGFVVGF--WCFIGPLLI--KRRWRYK 563
                +   P                  L +I+ A+GF  G      IG +++  K RW +K
Sbjct:   804 RVVHEPTPSGESETLESEQV------LSWIAAAIGFTPGIVLGLTIGHIVLSSKPRWFFK 857

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0009507 "chloroplast" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006457 "protein folding" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:2078112 RLP32 "receptor like protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 3.9e-53, P = 3.9e-53
 Identities = 172/557 (30%), Positives = 264/557 (47%)

Query:     2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSN-NKLNGT 60
             L +  + F G +   + +F  L+ LDLS+    GP+  S+    NL+ L L N + LN T
Sbjct:   292 LDISNNNFIGPIPKSISKFINLQDLDLSHLNTQGPVDFSI--FTNLKSLQLLNLSHLNTT 349

Query:    61 VS-EIHFL---NLTQLLVFRAHGN--SLVFKINPNWVPPFQL-AFLELRSCHLGPRFPLW 113
              + +++ L   +L  +      GN  S   KI+     P QL + L L  C +   FP  
Sbjct:   350 TTIDLNALFSSHLNSIYSMDLSGNHVSATTKISVADHHPTQLISQLYLSGCGI-TEFPEL 408

Query:   114 LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTP 173
             L+SQ K+  LDIS+ +I  ++P   W ++ +  ++++S N I+ G  +     + LIT P
Sbjct:   409 LRSQHKMTNLDISNNKIKGQVPGWLW-TLPKLIFVDLSNN-IFTGFERSTEHGLSLITKP 466

Query:   174 SLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRML 232
             S+   +   SNN  +G I   IC      +++  L LS N+ +  IP C  N    L  L
Sbjct:   467 SMQYLVG--SNNNFTGKIPSFICA----LRSLITLDLSDNNLNGSIPPCMGNLKSTLSFL 520

Query:   233 NLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIP 292
             NL  N   G LP SI                 G +P SF  LS L+ L++  N +    P
Sbjct:   521 NLRQNRLGGGLPRSI--FKSLRSLDVGHNQLVGKLPRSFIRLSALEVLNVENNRINDTFP 578

Query:   293 TWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP-RCINNFSAMA 351
              W+  +  +L +L LRSN FHG  PI      +L+I+++++N  SGT+P     N++AM+
Sbjct:   579 FWLS-SLKKLQVLVLRSNAFHG--PIHHASFHTLRIINLSHNQFSGTLPANYFVNWNAMS 635

Query:   352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVE 411
             +  +++  S   Y         +  +L+ KG  +E   IL +  ++D S+N   GEIP  
Sbjct:   636 SLMATEDRSQEKYMGDSFRYYHDSVVLMNKGLEMELVRILKIYTALDFSENKLEGEIPRS 695

Query:   412 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXX 471
             +  L+ L  LNLS N FTG IP ++G +R +ESLD S N+LSG+IPQ +           
Sbjct:   696 IGLLKELHVLNLSSNAFTGHIPSSMGNLRELESLDVSQNKLSGEIPQELGNLSYLAYMNF 755

Query:   472 XXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPLSN-CTEKNILIPXXXXXXXXXXXXXX 529
                   G +P  TQ +    SSF  N  L G+ L   C + +   P              
Sbjct:   756 SHNQLGGLVPGGTQFRRQNCSSFKDNPGLYGSSLEEVCLDIHAPAPQQHEPPELEEEDRE 815

Query:   530 XXXWLLYISMALGFVVG 546
                W   I+ A+GF  G
Sbjct:   816 VFSW---IAAAIGFGPG 829

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2074633 RLP35 "AT3G11080" [Arabidopsis thaliana (taxid:3702)]

 Score = 541 (195.5 bits), Expect = 2.2e-51, P = 2.2e-51
 Identities = 175/577 (30%), Positives = 271/577 (46%)

Query:     2 LFLRRSQFYGHLTNQLGRFKTLRALDLSN-NTVNGPIPLSLGQIANLEYLD-LSNNKLNG 59
             L +  + F G +   L RF  L   DLS+ NT   P+  S+   ++L+ LD L  + L  
Sbjct:   371 LIIGSNNFIGTIPRSLSRFVNLTLFDLSHLNTQCRPVDFSI--FSHLKSLDDLRLSYLTT 428

Query:    60 TVSEIHFLNLTQLLVFRA---HGNSLVFKINPNWV---PPFQ-LAFLELRSCHLGPRFPL 112
             T  +++ + L      R+    GN LV   N + V   PP Q +  L L  C +   FP 
Sbjct:   429 TTIDLNDI-LPYFKTLRSLDISGN-LVSATNKSSVSSDPPSQSIQSLYLSGCGITD-FPE 485

Query:   113 WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITT 172
              L++Q +L +LD+S+ +I  ++P   W ++    YLN+S N             +  +  
Sbjct:   486 ILRTQHELGFLDVSNNKIKGQVPGWLW-TLPNLFYLNLSNNTFISFESSSKKHGLSSVRK 544

Query:   173 PSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRM 231
             PS++  +F  SNN  +G I   IC G    +++  L LS+N+++  IP C       L +
Sbjct:   545 PSMI-HLF-ASNNNFTGKIPSFIC-G---LRSLNTLDLSENNYNGSIPRCMEKLKSTLFV 598

Query:   232 LNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNI 291
             LNL  NN +G LP  I                 G +P S    S L+ L++  N +    
Sbjct:   599 LNLRQNNLSGGLPKHI--FESLRSLDVGHNLLVGKLPRSLIRFSNLEVLNVESNRINDTF 656

Query:   292 PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP-RCINNFSAM 350
             P W+  + S+L +L LRSN FHG  PI       L+I+D+++N  +GT+P      +SAM
Sbjct:   657 PFWLS-SLSKLQVLVLRSNAFHG--PIHEATFPELRIIDISHNHFNGTLPTEYFVKWSAM 713

Query:   351 ATTDSSDPNSGIFYASSGDNEIVEDAL-LVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
             ++   ++  S   Y  SG     +D++ L+ KG  +E   IL +  ++D S N F GEIP
Sbjct:   714 SSLGKNEDQSNEKYMGSG--LYYQDSMVLMNKGLAMELVRILTIYTALDFSGNKFEGEIP 771

Query:   410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXX 469
               +  L+ L  LNLS+N F G IP ++G + ++ESLD S N+L+G+IPQ +         
Sbjct:   772 KSIGLLKELLVLNLSNNAFGGHIPSSMGNLTALESLDVSQNKLTGEIPQELGDLSFLAYM 831

Query:   470 XXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSN-CTEKNILIPXXXXXXXXXXXX 527
                     G +P  TQ +    S+F  N  L G  L   C +K+                
Sbjct:   832 NFSHNQLAGLVPGGTQFRRQNCSAFENNLGLFGPSLDEVCRDKHTPASQQNETTETEEED 891

Query:   528 XXXXXWLLYISMALGFVVG--FWCFIGPLLI--KRRW 560
                  W   I+ A+GF+ G  F   IG +L+  K  W
Sbjct:   892 EEEISW---IAAAIGFIPGIVFGLTIGYILVSYKPEW 925

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119535 RLP48 "receptor like protein 48" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 2.8e-51, Sum P(2) = 2.8e-51
 Identities = 158/535 (29%), Positives = 245/535 (45%)

Query:    26 LDLSNNTVNGP--IPLSLG-QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
             +DL +N + G   +  S+   + +L  LDLS       V    F +L  L      G +L
Sbjct:   202 IDLGSNQLKGRGIVDFSIFLHLKSLCSLDLSYLNTRSMVDLSFFSHLMSLDELDLSGINL 261

Query:    83 VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSI 142
               KI+     P     L L SC++   FP +L++Q  L+YLDIS+  I  ++P   W  +
Sbjct:   262 --KISSTLSFPSATGTLILASCNI-VEFPKFLENQTSLFYLDISANHIEGQVPEWLWR-L 317

Query:   143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202
                 ++N++ N   G +P            P+ + S F  S+N  SG I   +C  E  S
Sbjct:   318 PTLSFVNIAQNSFSGELPML----------PNSIYS-FIASDNQFSGEIPRTVC--ELVS 364

Query:   203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXX 262
              N   L LS N FS  IP C+ N+  + +L+L NN+ +G  P  I               
Sbjct:   365 LNT--LVLSNNKFSGSIPRCFENFKTISILHLRNNSLSGVFPKEI-ISETLTSLDVGHNW 421

Query:   263 XXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD-FPIQ-L 320
               G +P S    + L+ L++ +N +    P W+  + S L IL LRSN+F+G  F ++  
Sbjct:   422 LSGQLPKSLIKCTDLEFLNVEDNRINDKFPFWL-RSLSNLQILVLRSNEFYGPIFSLEDS 480

Query:   321 CRLGSLQILDVAYNSLSGTIPR-CINNFSAMATT-DSSDPNSGIFYASSGDNEIVEDALL 378
                  L+I D++ N  +G +P      +SAM++  D  D    +              +L
Sbjct:   481 LSFPKLRIFDISENHFTGVLPSDYFAGWSAMSSVVDIFDTTPQVHILGVFQGYYHNSVVL 540

Query:   379 VTKGFLVEY-NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 437
               KG  +E   S   + ++ID+S N   G+IP  +  L+ L  LN+S+N FTG IP ++ 
Sbjct:   541 TNKGLNMELVGSGFTIYKTIDVSGNRLEGDIPESIGILKELIVLNMSNNAFTGHIPPSLS 600

Query:   438 VMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN 497
              + +++SLD S N+LSG IP  +                 G IP +TQ+QS  +SSFA N
Sbjct:   601 NLSNLQSLDLSQNRLSGSIPPELGKLTFLEWMNFSYNRLEGPIPQATQIQSQNSSSFAEN 660

Query:   498 D-LCGAP-LSNCT-EKNILIPXXXXXXXXXXXXXXXXXWLLYISMALGFVVGFWC 549
               LCGAP L+ C  E+                         +I+ A+G+V G +C
Sbjct:   661 PGLCGAPFLNKCGGEEEEEEEATKQEEDEDEEKEEKNQVFSWIAAAIGYVPGVFC 715

GO:0005886 "plasma membrane" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 175/594 (29%), Positives = 274/594 (46%)

Query:     7 SQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPL-SLGQIANLEYLDLSNNKLNGTVSEIH 65
             + F G + + L    +L  L L  N  +GP  + ++   +NL+ L++  N  N  + ++ 
Sbjct:   166 NSFSGTIPSSLFMIPSLILLHLGRNDFSGPFEIGNISSPSNLQLLNIGRNNFNPDIVDLS 225

Query:    66 -FLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLD 124
              F  L  L      G +L  KI+     P  + +L L SC++   FP +L++Q  L YLD
Sbjct:   226 IFSPLLSLGYLDVSGINL--KISSTVSLPSPIEYLGLLSCNIS-EFPKFLRNQTSLEYLD 282

Query:   125 ISSTRISAKIPRGFWNSIFQYDYLNVSGNQ----------IYGG-------VPK--FDSP 165
             IS+ +I  ++P   W S+ +  Y+N+S N           I GG       +    F  P
Sbjct:   283 ISANQIEGQVPEWLW-SLPELRYVNISHNSFNGFEGPADVIQGGRELLVLDISSNIFQDP 341

Query:   166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
               PL+   S+   +F  SNN  SG I   IC+ +N    +  L LS N+FS  IP C+ N
Sbjct:   342 -FPLLPVVSM-NYLFS-SNNRFSGEIPKTICELDN----LRILVLSNNNFSGSIPRCFEN 394

Query:   226 WPRLRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGEN 285
                L +L+L NNN +G  P                    G +P S  N S ++ L++ +N
Sbjct:   395 L-HLYVLHLRNNNLSGIFPEE-AISHHLQSFDVGHNLFSGELPKSLINCSDIEFLNVEDN 452

Query:   286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGTIPR- 342
              +    P+W+ E    L IL LRSN+F+G    P        L+I D++ N  +G +P  
Sbjct:   453 RINDTFPSWL-ELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIFDISENRFTGVLPSD 511

Query:   343 CINNFSAMATTDSSDPNSGIFYASSG-DNEIVEDAL-LVTKGFLVEY-NSILNLVRSIDI 399
                 +S M++    D    I Y  +G D +    ++ L+ KG  +E   S   + ++ID+
Sbjct:   512 YFVGWSVMSSVVDIDGRI-IQYTVTGIDRDFYHKSVALINKGLKMELVGSGFTIYKTIDV 570

Query:   400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 459
             S N   G+IP  +  L+ +  L++S+N FTG IP ++  + +++SLD S N+LSG IP  
Sbjct:   571 SGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGE 630

Query:   460 MXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPL-SNCTEKNILIPXX 517
             +                 G IP +TQ+Q+  +SSF  N  LCGAPL   C  +       
Sbjct:   631 LGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGLCGAPLLKKCGGEEEA--TK 688

Query:   518 XXXXXXXXXXXXXXXWLLYISMALGFVVGFWC--FIGPLLI--KRRWRYKYCHF 567
                            W   I+ A+G+V G  C   IG +L+  KR W  +   F
Sbjct:   689 QEQDEDKEEEDQVFSW---IAAAIGYVPGVVCGLTIGHILVSHKRDWFMRIVSF 739

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2046397 RLP22 "receptor like protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 520 (188.1 bits), Expect = 5.8e-50, P = 5.8e-50
 Identities = 162/514 (31%), Positives = 236/514 (45%)

Query:    23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
             L  L+L NN     I   + ++ NL YL LS    +  +    F  L  L     HGNSL
Sbjct:    27 LENLNLGNNHFETEIIDPVLRLVNLRYLSLSFLNTSHPIDLSIFSPLQSLTHLDLHGNSL 86

Query:    83 VF-KINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS 141
                 +  +   P  +  L L  C++   FP +L+S KKL+YLD+SS RI   +P   W S
Sbjct:    87 TLTSVYSDIDFPKNMEILLLSGCNIS-EFPRFLKSLKKLWYLDLSSNRIKGNVPDWIW-S 144

Query:   142 IFQYDYLNVSGNQIYGGVPKFD----SPSVPL--ITTPSLLGS-------IFDLS--NNA 186
             +     L++S N   G     D    + SV +  I   S  GS       I +LS  NN+
Sbjct:   145 LPLLVSLDLSNNSFTGFNGSLDHVLANSSVQVLDIALNSFKGSFPNPPVSIINLSAWNNS 204

Query:   187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMS 246
              +G I   +C       +++ L LS N+F+  IP C  N+    ++NL  N   G++P  
Sbjct:   205 FTGDIPLSVCN----RTSLDVLDLSYNNFTGSIPPCMGNFT---IVNLRKNKLEGNIPDE 257

Query:   247 IGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN 306
               +               G +P S  N S ++ L +  N +  + P W+ +    L +L 
Sbjct:   258 FYSGALTQTLDVGYNQLTGELPRSLLNCSFIRFLSVDHNRINDSFPLWL-KALPNLKVLT 316

Query:   307 LRSNKFHGDF--PIQLCRLG--SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362
             LRSN FHG    P     L    LQIL++++N  +G++P   N F+  +       +   
Sbjct:   317 LRSNSFHGPMSPPDDQSSLAFPKLQILEISHNRFTGSLPT--NYFANWSVKSLKMYDEER 374

Query:   363 FYAS--SGDNEIVEDAL-LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ 419
              Y    S D  + ED L L  KG  +E   +L    +ID S N   GEIP  +  L+ L 
Sbjct:   375 LYMGDYSSDRFVYEDTLDLQYKGLYMEQGKVLTFYSAIDFSGNKLEGEIPESIGLLKTLI 434

Query:   420 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGE 479
             +LNLS+N FTG IP +   +  +ESLD S N+LSG+IPQ +                 G+
Sbjct:   435 ALNLSNNSFTGHIPMSFANVTELESLDLSGNKLSGEIPQELGRLSYLAYIDVSDNQLTGK 494

Query:   480 IPSSTQLQSFGASSFAGND-LCGAPLS-NCTEKN 511
             IP  TQ+     SSF GN  LCG PL  +C  ++
Sbjct:   495 IPQGTQIIGQPKSSFEGNSGLCGLPLEESCLRED 528

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2055772 RLP19 "receptor like protein 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 521 (188.5 bits), Expect = 3.8e-49, P = 3.8e-49
 Identities = 159/557 (28%), Positives = 260/557 (46%)

Query:     2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSL-GQIANLEYLDLSNNKLNGT 60
             L L  + F G +   + +   L+ LDLSN    G +  ++   + ++EYL+LS+     T
Sbjct:   406 LRLGNNNFRGPIHRSISKLVNLKELDLSNYNTQGLVDFTIFSHLKSIEYLNLSHLNTTTT 465

Query:    61 VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE---LRSCHLGPRFPLWLQSQ 117
             +     L+  +LL       S V   N + +    L  +    L  C +   FP +L+SQ
Sbjct:   466 IDMYEILSSFKLLDTLDLSGSHVSTTNKSSLSNSSLVLISQLYLSGCGI-TEFPKFLRSQ 524

Query:   118 KKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177
             + +  LDIS+ +I  ++P   W  +   +Y+N+S N   G   +     +  I  P  + 
Sbjct:   525 ELMLTLDISNNKIKGQVPGWLW-MLPVLNYVNLSNNTFIG-FERSTKLGLTSIQEPPAMR 582

Query:   178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW--PRLRMLNLG 235
              +F  SNN  +G+I   IC+    S  ++F   S N F+  IP C  N   P L+ LNL 
Sbjct:   583 QLF-CSNNNFTGNIPSFICELPYLS-TLDF---SNNKFNGSIPTCMGNIQSPYLQALNLR 637

Query:   236 NNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWI 295
             +N  +G LP +I                 G +P S  ++S L  L++  N++    P W+
Sbjct:   638 HNRLSGLLPENI--FESLISLDVGHNQLVGKLPRSLSHISSLGLLNVESNKISDTFPLWL 695

Query:   296 GETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP-RCINNFSAMATTD 354
               +   L +L LRSN F+G  PI+  +   L+I+D++ N  +GT+P     N++AM + D
Sbjct:   696 S-SLQELQVLVLRSNAFYG--PIEKTQFSKLRIIDISGNQFNGTLPANFFVNWTAMFSLD 752

Query:   355 SS-DPNSGIFYAS---SGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV 410
              + D ++G   ++   S D    +  +L+ KG  +E   +L +   ID S N F GEIP 
Sbjct:   753 ENEDQSNGETMSNMYMSTDYFYFDSMVLMNKGVEMELERVLKVFTVIDFSGNKFEGEIPK 812

Query:   411 EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXX 470
              +  L+ L  LNLS+N  +G I  ++G + ++ESLD S N+LSG+IPQ +          
Sbjct:   813 SIGLLKELHVLNLSNNALSGHIASSMGNLMALESLDVSQNKLSGEIPQELGKLTYLAYMN 872

Query:   471 XXXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPLSNCTEKNILIPXXXXXXXXXXXXXX 529
                    G +P  TQ Q+   SSF  N  L G  L    + +   P              
Sbjct:   873 FSHNQLVGLLPGGTQFQTQKCSSFEDNHGLYGPSLEKICDIHGKTPQQSDMAPEPEEDEE 932

Query:   530 XXXWLLYISMALGFVVG 546
                 + +I+  +GF++G
Sbjct:   933 EV--ISWIAAVIGFILG 947

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2173777 RLP54 "receptor like protein 54" [Arabidopsis thaliana (taxid:3702)]

 Score = 512 (185.3 bits), Expect = 1.2e-48, P = 1.2e-48
 Identities = 170/539 (31%), Positives = 255/539 (47%)

Query:     1 SLFLRRSQFYGHLTN-QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG 59
             SL LR++     L N        L  LD++ N ++  I   + ++ANL  +DLS  K   
Sbjct:   214 SLNLRQNHLSDPLENINYSATSKLLILDMAYNLMSHRILEPISKLANLIQIDLSFQKTPY 273

Query:    60 TVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKK 119
             T +   FL    L+     GNS V  +         L  L+L SC++   FP++++  ++
Sbjct:   274 TFN-FDFLLFKSLVRLDLSGNS-VSVVGTG---SENLTHLDLSSCNI-TEFPMFIKDLQR 327

Query:   120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYG--GVPKF---DSPSVPLITTPS 174
             L++LDIS+ RI  K+P   W ++    ++N+S N      G PK     S S   +++ +
Sbjct:   328 LWWLDISNNRIKGKVPELLW-TLPSMLHVNLSRNSFDSLEGTPKIILNSSISELDLSSNA 386

Query:   175 LLGS---------IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
               GS         I   SNN  +G I  + C+    S     L LS N+FS  IP C  N
Sbjct:   387 FKGSFPIIPPYVNIMAASNNYFTGGIPLIFCKRYRLS----LLDLSNNNFSGTIPRCLTN 442

Query:   226 WPR-LRMLNLGNNNFTGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGE 284
                 L  L L NN+ TG LP                    G +P S  N + LK L++  
Sbjct:   443 VSLGLEALKLSNNSLTGRLP---DIEDRLVLLDVGHNQISGKLPRSLVNCTTLKFLNVEG 499

Query:   285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGTIPR 342
             N +    P W+ +  +RL I+ LRSN+FHG    P       +L+I+D++ NS +G++P+
Sbjct:   500 NHINDTFPFWL-KALTRLEIIVLRSNRFHGPISSPEVSLSFTALRIIDISRNSFNGSLPQ 558

Query:   343 CINNFSAMATTDSSDPNSGIFYASSGDNEI-VEDAL-------LVTKGFLVEYNSILNLV 394
               N F+  +    + P    +   +GD     E  L       L  KG  +E   I +  
Sbjct:   559 --NYFANWSAPLVNTPQGYRWPEYTGDEHSKYETPLWSYPSIHLRIKGRSIELGKIPDTY 616

Query:   395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
              SID S N+F G+IP  + +L+ L  L+LS+N FTGRIP ++  ++ +ESLD S N++SG
Sbjct:   617 TSIDFSGNSFEGQIPESIGDLKSLIVLDLSNNSFTGRIPSSLAKLKQLESLDLSQNRISG 676

Query:   455 QIPQSMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLS-NCTEKN 511
              IPQ +                 G+IP STQ+     SSF GN +LCG PL  +C   N
Sbjct:   677 NIPQELRELTFLGYVNMSHNRLTGQIPQSTQVGGQPKSSFEGNINLCGLPLQESCLRGN 735

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2180587 RLP52 "receptor like protein 52" [Arabidopsis thaliana (taxid:3702)]

 Score = 510 (184.6 bits), Expect = 2.4e-48, P = 2.4e-48
 Identities = 161/512 (31%), Positives = 241/512 (47%)

Query:    11 GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
             G + + L   K L  L L  N + G IP S+    NL +LDLS N LNG++ E    NLT
Sbjct:   249 GRIPDVLFGLKNLTELYLFANDLTGEIPKSISA-KNLVHLDLSANNLNGSIPE-SIGNLT 306

Query:    71 QLLVFRAHGNSLVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR 129
              L +     N L  +I P  +    +L  L+L +  L    P  +    KL   ++S  +
Sbjct:   307 NLELLYLFVNELTGEI-PRAIGKLPELKELKLFTNKLTGEIPAEIGFISKLERFEVSENQ 365

Query:   130 ISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKF----DSPSVPLITTPSLLGSIF----D 181
             ++ K+P    +   +   + V  N + G +P+     ++ S  L+      GS+      
Sbjct:   366 LTGKLPENLCHG-GKLQSVIVYSNNLTGEIPESLGDCETLSSVLLQNNGFSGSVTISNNT 424

Query:   182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
              SNN  +G I   IC+      ++  L LS N F+  IP C  N   L +LNLG N+ +G
Sbjct:   425 RSNNNFTGKIPSFICE----LHSLILLDLSTNKFNGSIPRCIANLSTLEVLNLGKNHLSG 480

Query:   242 SLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
             S+P +I                 G +P S   +S L+ L++  N++    P W+ ++  +
Sbjct:   481 SIPENISTSVKSIDIGHNQLA--GKLPRSLVRISSLEVLNVESNKINDTFPFWL-DSMQQ 537

Query:   302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR-CINNFSAMATTDS-SDPN 359
             L +L LRSN FHG   I       L+I+D++ N  +GT+P     N++AM +     D  
Sbjct:   538 LQVLVLRSNAFHGS--INQNGFSKLRIIDISGNHFNGTLPLDFFVNWTAMFSLGKIEDQY 595

Query:   360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ 419
              G  Y  +  N   +  +++ KG  +E   ILN   +ID S N F GEIP  V  L+ L 
Sbjct:   596 MGTNYMRT--NYYSDSIVVMIKGIALEMVRILNTFTTIDFSGNKFEGEIPRSVGLLKELH 653

Query:   420 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXXXXXXXXXXXGE 479
              LNLS+N FTG IP ++G +  +ESLD S N+LSG+IP  +                 G 
Sbjct:   654 VLNLSNNGFTGHIPSSMGNLIELESLDVSQNKLSGEIPPELGKLSYLAYMNFSQNQFVGL 713

Query:   480 IPSSTQLQSFGASSFAGND-LCGAPLSN-CTE 509
             +P  TQ Q+   SSFA N  L G  L   C +
Sbjct:   714 VPGGTQFQTQPCSSFADNPRLFGLSLERVCVD 745

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0050832 "defense response to fungus" evidence=IMP

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2094603 RLP37 "receptor like protein 37" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 7.9e-48, P = 7.9e-48
 Identities = 177/583 (30%), Positives = 260/583 (44%)

Query:     4 LRRSQFYGHLT--NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
             L  +QF G +   N     K L  LD+S N ++G IP S+  + +LE+L+LS+N   G V
Sbjct:   262 LSENQFEGPINFGNTTSSSK-LTELDVSYNNLDGLIPKSISTLVSLEHLELSHNNFRGQV 320

Query:    62 -SEIHFL-NLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKK 119
              S I  L NL  L  + +H N+   ++  +      L  L+L     G R P  +     
Sbjct:   321 PSSISKLVNLDGL--YLSH-NNFGGQVPSSIFKLVNLEHLDLSHNDFGGRVPSSISKLVN 377

Query:   120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
             L  LD+S  +    +P+  W S  + D +++S N        F+S    L      L   
Sbjct:   378 LSSLDLSYNKFEGHVPQCIWRSS-KLDSVDLSYNS-------FNSFGRILELGDESLERD 429

Query:   180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
             +DLS+N+L G I   IC    FS    FL  S NH +  IP C  N     MLNL NN+ 
Sbjct:   430 WDLSSNSLQGPIPQWICNFRFFS----FLDFSNNHLNGSIPQCLKNSTDFYMLNLRNNSL 485

Query:   240 TGSLPMSIGAXXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
             +G +P                    G +P SF N   ++ L++  N++    P W+G + 
Sbjct:   486 SGFMPDFCMDGSMLGSLDVSLNNLVGKLPESFINCEWMEYLNVRGNKIKDTFPVWLG-SL 544

Query:   300 SRLMILNLRSNKFHGDFPIQLCRLG--SLQILDVAYNSLSGTIPR-CINNFSAMATTDSS 356
               L +L LRSN F+G        LG  S++I+D++ N+  G++P+    N++ M++    
Sbjct:   545 QYLTVLVLRSNTFYGPVYKASAYLGFPSMRIMDISNNNFVGSLPQDYFANWTEMSSVWQR 604

Query:   357 -----DPNSGIFYASS---GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
                  D    I    S   GD+   +   LV KG   ++  I    + ID S N FSG I
Sbjct:   605 PMLTLDYKRNIAIPGSNYMGDDNHQDSIDLVYKGVDTDFEQIFGGFKVIDFSGNRFSGHI 664

Query:   409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXXXXXXX 468
             P  +  L  L  LNLS N FTG IP ++  +  +E+LD S N LSG+IP+ +        
Sbjct:   665 PRSIGLLSELLHLNLSGNAFTGNIPPSLASITKLETLDLSRNNLSGEIPRGLGKLSFLSN 724

Query:   469 XXXXXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPLSNCTEKNILIPXXXXXXXXXXXX 527
                      G +P STQ  S   SSF GN  L G     C E ++ IP            
Sbjct:   725 INFSHNHLEGLVPQSTQFGSQNCSSFMGNPRLYGLD-QICGETHVPIPTSLHPEEPLLEP 783

Query:   528 XXXXXWLLYISMALGFVVGFWC--FIGPLLI--KRRWRY-KYC 565
                   L +I+ A+ F  G +C   IG +    K +W   K+C
Sbjct:   784 EETV--LNWIAAAIAFGPGVFCGLVIGHIFTSYKHKWLMAKFC 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00031679 hypothetical protein (1024 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	596
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-55
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-41
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-38
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-26
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-16
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-10
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	6e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.001

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  200 bits (510), Expect = 6e-55
 Identities = 159/504 (31%), Positives = 248/504 (49%), Gaps = 21/504 (4%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTV 61
           L L  + F G +    G    L  LDLSNN ++G IP  +G  ++L+ LDL  N L G +
Sbjct: 123 LNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKI 180

Query: 62  SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY 121
                 NLT L       N LV +I         L ++ L   +L    P  +     L 
Sbjct: 181 P-NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD 181
           +LD+    ++  IP    N +    YL +  N++ G +P        LI+         D
Sbjct: 240 HLDLVYNNLTGPIPSSLGN-LKNLQYLFLYQNKLSGPIPPSIFSLQKLIS--------LD 290

Query: 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
           LS+N+LSG I  L+ Q     +N+E L L  N+F+  IP    + PRL++L L +N F+G
Sbjct: 291 LSDNSLSGEIPELVIQ----LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSG 346

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
            +P ++G  N+L  L+L  N L+G IP    +   L  L +  N L G IP  +G   S 
Sbjct: 347 EIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS- 405

Query: 302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN-S 360
           L  + L+ N F G+ P +  +L  +  LD++ N+L G I     +  ++     +     
Sbjct: 406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFF 465

Query: 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNL--VRSIDISKNNFSGEIPVEVTNLQGL 418
           G    S G   +    L   +        + +L  +  + +S+N  SGEIP E+++ + L
Sbjct: 466 GGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL 525

Query: 419 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG 478
            SL+LSHN  +G+IP +   M  +  LD S NQLSG+IP+++ N+  L  +N+S+N+L+G
Sbjct: 526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG 585

Query: 479 EIPSSTQLQSFGASSFAGN-DLCG 501
            +PS+    +  AS+ AGN DLCG
Sbjct: 586 SLPSTGAFLAINASAVAGNIDLCG 609

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  161 bits (408), Expect = 1e-41
 Identities = 133/483 (27%), Positives = 218/483 (45%), Gaps = 85/483 (17%)

Query: 25  ALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG--------TVSEIHFLNLTQLLVFR 76
           ++DLS   ++G I  ++ ++  ++ ++LSNN+L+G        T S + +LNL+      
Sbjct: 73  SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS------ 126

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
                     N N+        +                    L  LD+S+  +S +IP 
Sbjct: 127 ----------NNNFTGSIPRGSIPN------------------LETLDLSNNMLSGEIPN 158

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLIC 196
               S      L++ GN + G +P     S+  +T+   L     L++N L G I   + 
Sbjct: 159 DI-GSFSSLKVLDLGGNVLVGKIP----NSLTNLTSLEFL----TLASNQLVGQIPRELG 209

Query: 197 QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
           Q     K+++++ L  N+ S +IP        L  L+L  NN TG +P S+G L +L  L
Sbjct: 210 Q----MKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYL 265

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF 316
            L  N+LSG IP S  +L  L +LD+ +N L G IP  + +    L IL+L SN F G  
Sbjct: 266 FLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQ-LQNLEILHLFSNNFTGKI 324

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCI---NNFSAMATTDSSDP--------NSG---- 361
           P+ L  L  LQ+L +  N  SG IP+ +   NN + +  + ++          +SG    
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFK 384

Query: 362 -IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQS 420
            I +++S + EI +                   +R + +  N+FSGE+P E T L  +  
Sbjct: 385 LILFSNSLEGEIPKSL------------GACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 421 LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 480
           L++S+N   GRI      M S++ L  + N+  G +P S      L  L+LS N  +G +
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFSGAV 491

Query: 481 PSS 483
           P  
Sbjct: 492 PRK 494

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  150 bits (380), Expect = 4e-38
 Identities = 105/305 (34%), Positives = 147/305 (48%), Gaps = 52/305 (17%)

Query: 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGN 236
              DLS   +SG I   I +       I+ + LS N  S  IP D +     LR LNL N
Sbjct: 72  VSIDLSGKNISGKISSAIFR----LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 237 NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG 296
           NNFTGS+P   G++ +L +L+L NN LSG IP    + S LK LD+G N LVG IP  + 
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLT 185

Query: 297 ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS 356
              + L  L L SN+  G  P +L ++ SL+ + + YN+LSG IP  I   +++      
Sbjct: 186 N-LTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSL------ 238

Query: 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQ 416
                                                   +D+  NN +G IP  + NL+
Sbjct: 239 --------------------------------------NHLDLVYNNLTGPIPSSLGNLK 260

Query: 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            LQ L L  N  +G IP +I  ++ + SLD S N LSG+IP+ +  L  L  L+L +NN 
Sbjct: 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNF 320

Query: 477 NGEIP 481
            G+IP
Sbjct: 321 TGKIP 325

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  115 bits (289), Expect = 1e-26
 Identities = 87/279 (31%), Positives = 140/279 (50%), Gaps = 25/279 (8%)

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTS-FRNLSILKALDMG 283
           N  R+  ++L   N +G +  +I  L  + ++NL NN+LSG IP   F   S L+ L++ 
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
            N   G+IP     +   L  L+L +N   G+ P  +    SL++LD+  N L G IP  
Sbjct: 127 NNNFTGSIP---RGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNS 183

Query: 344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN 403
           + N +++             + +   N++V            E   + +L + I +  NN
Sbjct: 184 LTNLTSLE------------FLTLASNQLV-------GQIPRELGQMKSL-KWIYLGYNN 223

Query: 404 FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL 463
            SGEIP E+  L  L  L+L +N  TG IP ++G +++++ L    N+LSG IP S+ +L
Sbjct: 224 LSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSL 283

Query: 464 SFLNYLNLSNNNLNGEIPS-STQLQSFGASSFAGNDLCG 501
             L  L+LS+N+L+GEIP    QLQ+        N+  G
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTG 322

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 41/114 (35%), Positives = 65/114 (57%), Gaps = 3/114 (2%)

Query: 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
            +  + +      G IP +++ L+ LQS+NLS N   G IP ++G + S+E LD S N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 453 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND---LCGAP 503
           +G IP+S+  L+ L  LNL+ N+L+G +P++   +    +SF   D   LCG P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.3 bits (167), Expect = 5e-12
 Identities = 28/80 (35%), Positives = 52/80 (65%)

Query: 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440
           +GF+    S L  ++SI++S N+  G IP  + ++  L+ L+LS+N F G IP+++G + 
Sbjct: 431 RGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 441 SIESLDFSANQLSGQIPQSM 460
           S+  L+ + N LSG++P ++
Sbjct: 491 SLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.9 bits (166), Expect = 6e-12
 Identities = 34/89 (38%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI 291
           L L N    G +P  I  L  L S+NL  N + G IP S  +++ L+ LD+  N   G+I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 292 PTWIGETFSRLMILNLRSNKFHGDFPIQL 320
           P  +G+  S L ILNL  N   G  P  L
Sbjct: 483 PESLGQLTS-LRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 64.5 bits (157), Expect = 9e-11
 Identities = 29/92 (31%), Positives = 46/92 (50%)

Query: 219 IPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK 278
           IP+       L+ +NL  N+  G++P S+G++ SL  L+L  N  +G IP S   L+ L+
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 279 ALDMGENELVGNIPTWIGETFSRLMILNLRSN 310
            L++  N L G +P  +G         N   N
Sbjct: 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 61.8 bits (150), Expect = 7e-10
 Identities = 30/72 (41%), Positives = 45/72 (62%), Gaps = 1/72 (1%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
           G + N + + + L++++LS N++ G IP SLG I +LE LDLS N  NG++ E     LT
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPE-SLGQLT 490

Query: 71  QLLVFRAHGNSL 82
            L +   +GNSL
Sbjct: 491 SLRILNLNGNSL 502

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.2 bits (138), Expect = 2e-08
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 1/84 (1%)

Query: 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 459
           S  +      +   N   + S++LS    +G+I   I  +  I++++ S NQLSG IP  
Sbjct: 53  SSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112

Query: 460 MSNLSF-LNYLNLSNNNLNGEIPS 482
           +   S  L YLNLSNNN  G IP 
Sbjct: 113 IFTTSSSLRYLNLSNNNFTGSIPR 136

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 3e-07
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 8/92 (8%)

Query: 181 DLSNNALSGSIFHLICQGENFSK--NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
            L N  L G I        + SK  +++ + LS N    +IP    +   L +L+L  N+
Sbjct: 424 GLDNQGLRGFI------PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTS 270
           F GS+P S+G L SL  LNL  N LSG +P +
Sbjct: 478 FNGSIPESLGQLTSLRILNLNGNSLSGRVPAA 509

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 21/60 (35%), Positives = 31/60 (51%)

Query: 228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL 287
            L+ L+L NN  T     +   L +L  L+L  N L+ I P +F  L  L++LD+  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.3 bits (115), Expect = 1e-05
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           S+ L  +   G++   LG   +L  LDLS N+ NG IP SLGQ+ +L  L+L+ N L+G 
Sbjct: 446 SINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGR 505

Query: 61  V 61
           V
Sbjct: 506 V 506

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 276 ILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335
            +  L +    L G IP  I +    L  +NL  N   G+ P  L  + SL++LD++YNS
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS 477

Query: 336 LSGTIP 341
            +G+IP
Sbjct: 478 FNGSIP 483

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 22/60 (36%), Positives = 33/60 (55%)

Query: 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            L+SL+LS+N  T         + +++ LD S N L+   P++ S L  L  L+LS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 3/85 (3%)

Query: 396 SIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455
           ++D+S N+ S ++P  ++NL  L +L+LS N  +  +P  I ++ ++E LD S N +  +
Sbjct: 167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E 223

Query: 456 IPQSMSNLSFLNYLNLSNNNLNGEI 480
           +  S+SNL  L+ L LSNN L    
Sbjct: 224 LLSSLSNLKNLSGLELSNNKLEDLP 248

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 43.1 bits (102), Expect = 3e-04
 Identities = 26/120 (21%), Positives = 52/120 (43%), Gaps = 13/120 (10%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE----DIPDCWMNWPRLRMLNLGN 236
           +L+NN +  +    + +G   + N+E L L+ N  ++     + +   +   L +LNLG+
Sbjct: 171 NLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD 230

Query: 237 NNFTGS-----LPMSIGALNSLMSLNLRNNRL----SGIIPTSFRNLSILKALDMGENEL 287
           NN T +         +    SL++L+L  N +    +  +         L  LD+  N+ 
Sbjct: 231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 4e-04
 Identities = 71/283 (25%), Positives = 117/283 (41%), Gaps = 56/283 (19%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS-LMSLNLRNN 261
             +  L L+ N    +I +  +    L  L+L NNN T  +P  IG L S L  L+L +N
Sbjct: 93  LPLPSLDLNLNRLRSNISEL-LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDN 150

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
           ++   +P+  RNL  LK LD+  N+L  ++P  +    S L  L+L  NK   D P ++ 
Sbjct: 151 KIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL-SNLNNLDLSGNKIS-DLPPEIE 206

Query: 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
            L +L+ LD++ NS+   +   ++N                                   
Sbjct: 207 LLSALEELDLSNNSII-ELLSSLSNLK--------------------------------- 232

Query: 382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441
                  S L L        NN   ++P  + NL  L++L+LS+N  +     ++G + +
Sbjct: 233 -----NLSGLEL-------SNNKLEDLPESIGNLSNLETLDLSNNQIS--SISSLGSLTN 278

Query: 442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
           +  LD S N LS  +P   + L  L  L L+       +    
Sbjct: 279 LRELDLSGNSLSNALPLI-ALLLLLLELLLNLLLTLKALELKL 320

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%)

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263
           N++ L LS N  +      +   P L++L+L  NN T   P +   L SL SL+L  N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.6 bits (100), Expect = 5e-04
 Identities = 28/96 (29%), Positives = 55/96 (57%), Gaps = 3/96 (3%)

Query: 394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453
           ++ +D+S N     +P  + NL  L++L+LS N  +  +P  +  + ++ +LD S N++S
Sbjct: 142 LKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS 199

Query: 454 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 489
             +P  +  LS L  L+LSNN++   + S + L++ 
Sbjct: 200 -DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 21/61 (34%), Positives = 35/61 (57%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           SL L  +Q  G +         L  LDLS N ++G IP +LG + +L  +++S+N L+G+
Sbjct: 527 SLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586

Query: 61  V 61
           +
Sbjct: 587 L 587

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 0.001
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 44/133 (33%)

Query: 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364
           L L +    G  P  + +L  LQ ++++ NS+ G IP  + + +++              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSL-------------- 468

Query: 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLS 424
                                           +D+S N+F+G IP  +  L  L+ LNL+
Sbjct: 469 ------------------------------EVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 425 HNLFTGRIPDNIG 437
            N  +GR+P  +G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	596
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.95
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.73
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.61
PLN03150	623	hypothetical protein; Provisional	99.54
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
PLN03150	623	hypothetical protein; Provisional	99.26
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.24
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.22
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.17
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.15
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.14
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.1
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.09
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.93
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.88
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.8
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.78
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.72
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.62
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.46
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.3
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.27
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.16
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.05
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.97
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.84
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.7
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.66
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.63
PRK15386	426	type III secretion protein GogB; Provisional	97.61
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.42
KOG4341	483	consensus F-box protein containing LRR [General fu	97.21
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.2
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.09
KOG4341	483	consensus F-box protein containing LRR [General fu	97.04
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.46
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.08
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.03
KOG1947	482	consensus Leucine rich repeat proteins, some prote	95.53
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.79
KOG4308	478	consensus LRR-containing protein [Function unknown	94.49
KOG4308	478	consensus LRR-containing protein [Function unknown	93.49
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.22
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.08
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	91.75
smart00370	26	LRR Leucine-rich repeats, outliers.	91.75
smart00370	26	LRR Leucine-rich repeats, outliers.	90.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.85
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.79
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.31
PF08693	40	SKG6: Transmembrane alpha-helix domain; InterPro:	86.29
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	83.34
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	81.84
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.01
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	80.77
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	80.75

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=1.6e-54  Score=495.43  Aligned_cols=494  Identities=33%  Similarity=0.473  Sum_probs=346.2

Q ss_pred             CeeecCCCccccCCcccc-CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353            1 SLFLRRSQFYGHLTNQLG-RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG   79 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~-~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~   79 (596)
                      +|+|++|++++.+|..+. .+++|++|++++|.+++.+|.  ..+++|++|+|++|.+.+.+|. .+.++++|++|++++
T Consensus        97 ~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~-~~~~l~~L~~L~L~~  173 (968)
T PLN00113         97 TINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPN-DIGSFSSLKVLDLGG  173 (968)
T ss_pred             EEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCCh-HHhcCCCCCEEECcc
Confidence            378999999888887654 889999999999988876664  4578888888888888777776 788888888888888


Q ss_pred             CeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353           80 NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (596)
                      |.+.+..+..+.++++|++|++++|.+.+..|..++++++|+.|++++|.+++.+|..+. .+++|++|++++|.+++..
T Consensus       174 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~  252 (968)
T PLN00113        174 NVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPI  252 (968)
T ss_pred             CcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHh-cCCCCCEEECcCceecccc
Confidence            888877888888888888888888888888888888888888888888888877777764 4688888888888887766


Q ss_pred             CCCCCCCCCc--cc---------cC----CCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc
Q 044353          160 PKFDSPSVPL--IT---------TP----SLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW  223 (596)
Q Consensus       160 ~~~~~~~~~~--~~---------~~----~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  223 (596)
                      |..+......  +.         +|    .+.. +.+++++|.+.+..+..+    ..+++|+.|++++|.+.+..|..+
T Consensus       253 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~----~~l~~L~~L~l~~n~~~~~~~~~~  328 (968)
T PLN00113        253 PSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELV----IQLQNLEILHLFSNNFTGKIPVAL  328 (968)
T ss_pred             ChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhH----cCCCCCcEEECCCCccCCcCChhH
Confidence            6554432111  00         01    0111 444555555444333222    224555555555555555555555


Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM  303 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  303 (596)
                      ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+
T Consensus       329 ~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~-~~~~L~  407 (968)
T PLN00113        329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG-ACRSLR  407 (968)
T ss_pred             hcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh-CCCCCC
Confidence            5555555555555555555555555555555555555555555555555555555555555555555555544 456666


Q ss_pred             EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEE---e
Q 044353          304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV---T  380 (596)
Q Consensus       304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~---~  380 (596)
                      .|++++|.+++..|..+..+++|+.|++++|.+++.+|..+..+++|+.++++.+......+............+.   .
T Consensus       408 ~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l  487 (968)
T PLN00113        408 RVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQF  487 (968)
T ss_pred             EEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCcc
Confidence            6666666666666666666666666666666666666666666666666666655432111111101111111111   1


Q ss_pred             ccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccc
Q 044353          381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM  460 (596)
Q Consensus       381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  460 (596)
                      .+..+..+..+++|+.|+|++|.+.+.+|..+..+++|++|+|++|.+++.+|..+..+++|+.|+|++|++++.+|..+
T Consensus       488 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l  567 (968)
T PLN00113        488 SGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNL  567 (968)
T ss_pred             CCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhH
Confidence            22333445568889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          461 SNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       461 ~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      ..+++|+.|++++|++.+.+|...++.++....+.||+ +|+.+
T Consensus       568 ~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        568 GNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             hcCcccCEEeccCCcceeeCCCcchhcccChhhhcCCccccCCc
Confidence            99999999999999999999999888899888999999 89754

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=8.9e-52  Score=472.79  Aligned_cols=489  Identities=30%  Similarity=0.430  Sum_probs=377.4

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG   79 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~   79 (596)
                      .|||++|.+++.++..+..+++|+.|+|++|++++.+|..+. .+++|++|+|++|++++.+|.   ..+++|++|++++
T Consensus        73 ~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~  149 (968)
T PLN00113         73 SIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSN  149 (968)
T ss_pred             EEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcC
Confidence            379999999999999999999999999999999988887654 899999999999999877775   4688999999999


Q ss_pred             CeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353           80 NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (596)
                      |.+.+..+..+..+++|++|++++|.+.+..|..++++++|++|++++|.+++.+|..+.. +++|++|++++|++++..
T Consensus       150 n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-l~~L~~L~L~~n~l~~~~  228 (968)
T PLN00113        150 NMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQ-MKSLKWIYLGYNNLSGEI  228 (968)
T ss_pred             CcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcC-cCCccEEECcCCccCCcC
Confidence            9999888999999999999999999999999999999999999999999999888887754 799999999999998877


Q ss_pred             CCCCCCCCCc--cc---------cC----CCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc
Q 044353          160 PKFDSPSVPL--IT---------TP----SLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW  223 (596)
Q Consensus       160 ~~~~~~~~~~--~~---------~~----~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~  223 (596)
                      |..+......  ++         +|    .+.. +.+++++|.+.+..+..    +..+++|++|++++|.+.+..|..+
T Consensus       229 p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~Ls~n~l~~~~p~~~  304 (968)
T PLN00113        229 PYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS----IFSLQKLISLDLSDNSLSGEIPELV  304 (968)
T ss_pred             ChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh----HhhccCcCEEECcCCeeccCCChhH
Confidence            7655443211  11         11    1112 45555555555443332    2235666666666666666666666


Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM  303 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  303 (596)
                      ..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+.+|.++. .+++|+
T Consensus       305 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~-~~~~L~  383 (968)
T PLN00113        305 IQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC-SSGNLF  383 (968)
T ss_pred             cCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh-CcCCCC
Confidence            6666667777766666666666666667777777777777666666666777777777777777666666665 466777


Q ss_pred             EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC-CCCCceeeeeEEEec-
Q 044353          304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS-SGDNEIVEDALLVTK-  381 (596)
Q Consensus       304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~-  381 (596)
                      .|++++|.+.+.+|..+..+++|+.|++++|++++.+|..+..++.|+.++++.+........ ...........+... 
T Consensus       384 ~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        384 KLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             EEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence            777777777777777777778888888888888877888888888888888877654322211 001111111111111 


Q ss_pred             --cceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcc
Q 044353          382 --GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS  459 (596)
Q Consensus       382 --~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  459 (596)
                        +..+.. ...++|+.|++++|.+++..|..+..+++|++|+|++|++.+.+|+.+..+++|++|+|++|.+++.+|..
T Consensus       464 ~~~~~p~~-~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        464 FFGGLPDS-FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             eeeecCcc-cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence              111111 13478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCEEecccccCccCCCCC-CccCccccccccCCCC
Q 044353          460 MSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGNDL  499 (596)
Q Consensus       460 ~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~l  499 (596)
                      +..+++|+.|++++|++++.+|.. ..+..++.+++.+|++
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l  583 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL  583 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcc
Confidence            999999999999999999988865 5677889999999984

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4e-41  Score=328.04  Aligned_cols=396  Identities=21%  Similarity=0.218  Sum_probs=285.3

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      ||+++|++...-+..|.++++|+.+++..|.++ .+|..-....+|+.|+|..|.|+ .+....+.-++.|++||||.|.
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~  160 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRNL  160 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhch
Confidence            677788877777777778888888888887777 45655555666888888888776 6665577777778888888887


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      ++......|..-.++++|+|++|+|+......|..+.+|..|.|+.|+++ .+|...|+.++.|+.|++..|+|.-..  
T Consensus       161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive--  237 (873)
T KOG4194|consen  161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVE--  237 (873)
T ss_pred             hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeeeh--
Confidence            77777777777777888888888877777777777777778888888877 567666676777777777777762100  


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG  241 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  241 (596)
                                                        ...+..+++|+.|.|..|.+.....++|..+.++++|+|+.|++..
T Consensus       238 ----------------------------------~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~  283 (873)
T KOG4194|consen  238 ----------------------------------GLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQA  283 (873)
T ss_pred             ----------------------------------hhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhh
Confidence                                              0112235677777777777776666777777777777777777776


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      .-..++.++++|+.|+++.|.|..+.+.....+++|++|+|++|.++ ++++..+..+..|++|.|++|+++.....+|.
T Consensus       284 vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~  362 (873)
T KOG4194|consen  284 VNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEELNLSHNSIDHLAEGAFV  362 (873)
T ss_pred             hhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhhcccccchHHHHhhHHH
Confidence            66667777777777777777777777777777777777777777777 66666666677777777777777765566677


Q ss_pred             CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC
Q 044353          322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK  401 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  401 (596)
                      .+++|++|||+.|.++..+-+                                                           
T Consensus       363 ~lssL~~LdLr~N~ls~~IED-----------------------------------------------------------  383 (873)
T KOG4194|consen  363 GLSSLHKLDLRSNELSWCIED-----------------------------------------------------------  383 (873)
T ss_pred             HhhhhhhhcCcCCeEEEEEec-----------------------------------------------------------
Confidence            777777777777766632221                                                           


Q ss_pred             CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCC
Q 044353          402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  481 (596)
Q Consensus       402 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  481 (596)
                            -...|.++++|+.|+|.+|++..+...+|.+++.|++|||.+|.|..+.|.+|..| .|+.|-+..-.+.|.|.
T Consensus       384 ------aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCq  456 (873)
T KOG4194|consen  384 ------AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQ  456 (873)
T ss_pred             ------chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEecc
Confidence                  22356778888888888888886666788888888888888888888888888888 78888888777878776


Q ss_pred             CCCccCccccccccCCC--CCCCC
Q 044353          482 SSTQLQSFGASSFAGND--LCGAP  503 (596)
Q Consensus       482 ~~~~~~~l~~~~~~~n~--lc~~~  503 (596)
                      -.+..+.+....+..--  .|+.|
T Consensus       457 l~Wl~qWl~~~~lq~sv~a~CayP  480 (873)
T KOG4194|consen  457 LKWLAQWLYRRKLQSSVIAKCAYP  480 (873)
T ss_pred             HHHHHHHHHhcccccceeeeccCC
Confidence            65555555444443222  46655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.9e-40  Score=323.29  Aligned_cols=398  Identities=23%  Similarity=0.261  Sum_probs=327.0

Q ss_pred             CEEECcCCcccccCCccCcCC--CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353           24 RALDLSNNTVNGPIPLSLGQI--ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL  101 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  101 (596)
                      +.||.+++.+..+....+.++  +.-+.||+++|++. .+....|.++++|+++++.+|.++. +|.......+|+.|+|
T Consensus        55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~-~id~~~f~nl~nLq~v~l~~N~Lt~-IP~f~~~sghl~~L~L  132 (873)
T KOG4194|consen   55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLS-HIDFEFFYNLPNLQEVNLNKNELTR-IPRFGHESGHLEKLDL  132 (873)
T ss_pred             eeeecCccccccccccccCCcCccceeeeeccccccc-cCcHHHHhcCCcceeeeeccchhhh-cccccccccceeEEee
Confidence            457888887775433333332  34567999999997 6666688999999999999998863 3444445557999999


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD  181 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~  181 (596)
                      .+|.|.+.....++.++.|+.|||+.|.|+ .++..-+..-.++++|+++.|+|+......+                  
T Consensus       133 ~~N~I~sv~se~L~~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F------------------  193 (873)
T KOG4194|consen  133 RHNLISSVTSEELSALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHF------------------  193 (873)
T ss_pred             eccccccccHHHHHhHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccccccccc------------------
Confidence            999998888888999999999999999887 5665544444678889998888864333222                  


Q ss_pred             cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                                        ..+.+|..|.|+.|+++...+..|.++++|+.|+|..|+|.-.-.-.|.++++|+.|.|..|
T Consensus       194 ------------------~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  194 ------------------DSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             ------------------cccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence                              12568899999999999888888999999999999999998555778999999999999999


Q ss_pred             cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCC
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP  341 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  341 (596)
                      .|......+|..+.++++|+|+.|++...-..|++ ++.+|+.|++++|.+..+.+..+..+++|++|+|++|+++...+
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~  334 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDE  334 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhccchhhhheeecchhhhcccceeEeccccccccCCh
Confidence            99988889999999999999999999855566777 89999999999999998888999999999999999999996555


Q ss_pred             ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353          342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL  421 (596)
Q Consensus       342 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  421 (596)
                      .+|..                                            ++.|+.|+|++|.++..-..+|..+++|++|
T Consensus       335 ~sf~~--------------------------------------------L~~Le~LnLs~Nsi~~l~e~af~~lssL~~L  370 (873)
T KOG4194|consen  335 GSFRV--------------------------------------------LSQLEELNLSHNSIDHLAEGAFVGLSSLHKL  370 (873)
T ss_pred             hHHHH--------------------------------------------HHHhhhhcccccchHHHHhhHHHHhhhhhhh
Confidence            55554                                            4458899999999998888899999999999


Q ss_pred             eccCccCcccCCc---cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC
Q 044353          422 NLSHNLFTGRIPD---NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND  498 (596)
Q Consensus       422 ~Ls~n~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~  498 (596)
                      ||++|.++..+.+   .|.++++|+.|++.+|++..+...+|.+++.|+.|||.+|.+...-+.+..-..++.+.+..-.
T Consensus       371 dLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss  450 (873)
T KOG4194|consen  371 DLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS  450 (873)
T ss_pred             cCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence            9999999876665   4778999999999999999777789999999999999999999888877554477777776555


Q ss_pred             -CCCCCCC
Q 044353          499 -LCGAPLS  505 (596)
Q Consensus       499 -lc~~~~~  505 (596)
                       +|+|.+.
T Consensus       451 flCDCql~  458 (873)
T KOG4194|consen  451 FLCDCQLK  458 (873)
T ss_pred             eEEeccHH
Confidence             8988754

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=5.6e-38  Score=293.43  Aligned_cols=446  Identities=24%  Similarity=0.331  Sum_probs=308.7

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      +++++|.++. +...+.++..|.+|++++|.++ ..|.+++.+..++.++.+.|++. .+|. .+..+..|+.+++++|.
T Consensus        50 lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~-~i~s~~~l~~l~~s~n~  125 (565)
T KOG0472|consen   50 LILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPE-QIGSLISLVKLDCSSNE  125 (565)
T ss_pred             hhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccH-HHhhhhhhhhhhccccc
Confidence            4566777763 3445667777777777777777 55667777777777777777776 6666 67777777777777777


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      +. ..++.++.+..|+.++..+|++. ..|..+..+.++..+++.+|++.. .|..... +++|++++...|.+... |.
T Consensus       126 ~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~L~tl-P~  200 (565)
T KOG0472|consen  126 LK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNLLETL-PP  200 (565)
T ss_pred             ee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhhhhcC-Ch
Confidence            65 34556666777777777777775 455566667777777777777763 4444333 56777777777765432 22


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcc-cCCCCCCcEEEccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDC-WMNWPRLRMLNLGNNNFT  240 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  240 (596)
                      ..+.+-+.        ..+++.+|.+..     + .++..+..|++|+++.|.+.- +|.. ...++++.+||+.+|+++
T Consensus       201 ~lg~l~~L--------~~LyL~~Nki~~-----l-Pef~gcs~L~Elh~g~N~i~~-lpae~~~~L~~l~vLDLRdNklk  265 (565)
T KOG0472|consen  201 ELGGLESL--------ELLYLRRNKIRF-----L-PEFPGCSLLKELHVGENQIEM-LPAEHLKHLNSLLVLDLRDNKLK  265 (565)
T ss_pred             hhcchhhh--------HHHHhhhccccc-----C-CCCCccHHHHHHHhcccHHHh-hHHHHhcccccceeeeccccccc
Confidence            22211000        334455555431     1 134446778888888887754 4433 447778888888888887


Q ss_pred             ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccC-----------------------------
Q 044353          241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI-----------------------------  291 (596)
Q Consensus       241 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-----------------------------  291 (596)
                       ..|+.+..+.+|+.||+++|.|+ ..|..++++ +|+.|.+.||.+. ++                             
T Consensus       266 -e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlr-TiRr~ii~~gT~~vLKyLrs~~~~dglS~se  341 (565)
T KOG0472|consen  266 -EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLR-TIRREIISKGTQEVLKYLRSKIKDDGLSQSE  341 (565)
T ss_pred             -cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchH-HHHHHHHcccHHHHHHHHHHhhccCCCCCCc
Confidence             77777777788888888888888 456677777 7888888888764 11                             


Q ss_pred             ---------chhhhh---hcccccEEEccCCcCcCcCCcccCCCC---CCcEEeCCCCcCcccCCccccccccCccc-CC
Q 044353          292 ---------PTWIGE---TFSRLMILNLRSNKFHGDFPIQLCRLG---SLQILDVAYNSLSGTIPRCINNFSAMATT-DS  355 (596)
Q Consensus       292 ---------~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~---~L~~L~l~~n~l~~~~~~~~~~l~~L~~l-~l  355 (596)
                               +.+.+.   ...+.+.|+++.-.++ .+|..+....   -....+++.|++. ++|..+..+..+.+. .+
T Consensus       342 ~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~l  419 (565)
T KOG0472|consen  342 GGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVL  419 (565)
T ss_pred             ccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHh
Confidence                     111111   1334666666666666 4444332222   3667777777776 677666655554332 22


Q ss_pred             CCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcc
Q 044353          356 SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN  435 (596)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  435 (596)
                      +.+.                     .++.+...+.+++|..|++++|-+- .+|..++++..|++|++|.|++. .+|.+
T Consensus       420 snn~---------------------isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~  476 (565)
T KOG0472|consen  420 SNNK---------------------ISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPEC  476 (565)
T ss_pred             hcCc---------------------cccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHH
Confidence            2221                     2334445566888999999999887 78999999999999999999998 89998


Q ss_pred             ccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCC
Q 044353          436 IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLC  500 (596)
Q Consensus       436 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc  500 (596)
                      +..+..++.+-.++|++....|+.+.+|.+|++||+.+|.+....|..+.+.+++.+.++|||.-
T Consensus       477 ~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  477 LYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             HhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccC
Confidence            88888899999999999977778899999999999999999988888899999999999999855

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=1.4e-34  Score=284.39  Aligned_cols=379  Identities=22%  Similarity=0.340  Sum_probs=242.6

Q ss_pred             eeecCCCcc-ccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            2 LFLRRSQFY-GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         2 l~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+++|.|+ +..|.....++.++.|.|....+. .+|+.++.+.+|++|.++.|++. .+-. .++.++.|+.+++..|
T Consensus        12 vDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~LRsv~~R~N   88 (1255)
T KOG0444|consen   12 VDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPRLRSVIVRDN   88 (1255)
T ss_pred             ccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchhhHHHhhhcc
Confidence            456666666 345666666666666666666655 45666666666666666666655 3332 5556666666666666


Q ss_pred             eee-eEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353           81 SLV-FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        81 ~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (596)
                      ++. ..+|..+..+..|..|+|++|++. ..|..+..-+++-+|+|++|.|. .+|..++..+..|-.|++++|++... 
T Consensus        89 ~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe~L-  165 (1255)
T KOG0444|consen   89 NLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLEML-  165 (1255)
T ss_pred             ccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhhhc-
Confidence            654 233445555666666666666664 45555555566666666666664 56666555555666666666655211 


Q ss_pred             CCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccc
Q 044353          160 PKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF  239 (596)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  239 (596)
                                                          +..+..+..|+.|+|++|.+....-..+..++.|++|.+++.+-
T Consensus       166 ------------------------------------PPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  166 ------------------------------------PPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             ------------------------------------CHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence                                                11112245677777777766543333344556666777766653


Q ss_pred             c-ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc
Q 044353          240 T-GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI  318 (596)
Q Consensus       240 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  318 (596)
                      + ..+|.++.++.+|..+|++.|.+. +.|+.+..+++|+.|+|++|+++ .+..... .-.+|+.|+++.|.++ .+|.
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~-~W~~lEtLNlSrNQLt-~LP~  285 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEG-EWENLETLNLSRNQLT-VLPD  285 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHH-HHhhhhhhccccchhc-cchH
Confidence            3 356667777777777777777777 66777777777777777777776 5544443 2456777777777777 6677


Q ss_pred             ccCCCCCCcEEeCCCCcCcc-cCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEE
Q 044353          319 QLCRLGSLQILDVAYNSLSG-TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI  397 (596)
Q Consensus       319 ~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  397 (596)
                      +++.++.|+.|.+.+|+++- -+|..++.+..                                            |+.+
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~--------------------------------------------Levf  321 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQ--------------------------------------------LEVF  321 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhh--------------------------------------------hHHH
Confidence            77777777777777776642 35555555443                                            6666


Q ss_pred             EccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          398 DISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       398 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      ..++|.+. .+|+.++.|..|+.|.|+.|++- ..|+++.-++.|+.||++.|.--.+.|..-..-.+|+.-++.
T Consensus       322 ~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNID  394 (1255)
T KOG0444|consen  322 HAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNID  394 (1255)
T ss_pred             Hhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeecc
Confidence            77777776 88888999999999999999887 788888888999999999886665666543333455544443

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.97  E-value=6.5e-35  Score=272.93  Aligned_cols=421  Identities=24%  Similarity=0.343  Sum_probs=332.9

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+++.|++. ..|++++.+..+..|++++|.++ .+|+.+..+.+|+.++.++|.+. .++. .++.+..|+.++..+|
T Consensus        72 vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~-~i~~~~~l~dl~~~~N  147 (565)
T KOG0472|consen   72 VLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPD-SIGRLLDLEDLDATNN  147 (565)
T ss_pred             EEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCc-hHHHHhhhhhhhcccc
Confidence            3678889988 67999999999999999999998 78999999999999999999998 7776 8899999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP  160 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (596)
                      +++ ..|..+..+.+|..+++.+|+++...+..+. +++|++||...|-++ .+|..+.. +.+|.-|++.+|++..   
T Consensus       148 ~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~-l~~L~~LyL~~Nki~~---  220 (565)
T KOG0472|consen  148 QIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGG-LESLELLYLRRNKIRF---  220 (565)
T ss_pred             ccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcc-hhhhHHHHhhhccccc---
Confidence            987 4567788899999999999999877666666 999999999999886 78888754 7899999999999842   


Q ss_pred             CCCCCCCCccccCCCCC----ceEEcccCccccccccccccCC-CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcc
Q 044353          161 KFDSPSVPLITTPSLLG----SIFDLSNNALSGSIFHLICQGE-NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLG  235 (596)
Q Consensus       161 ~~~~~~~~~~~~~~~~~----~~l~ls~n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  235 (596)
                                 +|+++.    ..+..+.|.+..-     +++. .+++.+..||+..|++.+ .|+.++-+.+|..||++
T Consensus       221 -----------lPef~gcs~L~Elh~g~N~i~~l-----pae~~~~L~~l~vLDLRdNklke-~Pde~clLrsL~rLDlS  283 (565)
T KOG0472|consen  221 -----------LPEFPGCSLLKELHVGENQIEML-----PAEHLKHLNSLLVLDLRDNKLKE-VPDEICLLRSLERLDLS  283 (565)
T ss_pred             -----------CCCCCccHHHHHHHhcccHHHhh-----HHHHhcccccceeeecccccccc-CchHHHHhhhhhhhccc
Confidence                       233332    5566777766432     2222 247788899999999974 78888888999999999


Q ss_pred             cccccccCCccCcCCCCCcEEEccCCcccccC--------------------------------------Ch---hhcCC
Q 044353          236 NNNFTGSLPMSIGALNSLMSLNLRNNRLSGII--------------------------------------PT---SFRNL  274 (596)
Q Consensus       236 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--------------------------------------~~---~~~~l  274 (596)
                      +|.++ ..|..++++ +|+.|-+.+|.+.++-                                      +.   ....+
T Consensus       284 NN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~  361 (565)
T KOG0472|consen  284 NNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAI  361 (565)
T ss_pred             CCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhh
Confidence            99998 678888888 8999999998764221                                      01   11234


Q ss_pred             CCCCEEEccCCcccccCchhhhhhcc--cccEEEccCCcCcCcCCcccCCCCCCcEE-eCCCCcCcccCCccccccccCc
Q 044353          275 SILKALDMGENELVGNIPTWIGETFS--RLMILNLRSNKFHGDFPIQLCRLGSLQIL-DVAYNSLSGTIPRCINNFSAMA  351 (596)
Q Consensus       275 ~~L~~L~L~~n~l~~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~l~~L~  351 (596)
                      .+.+.|++++-+++ .+|+..|+.-.  -....+++.|.+. ++|..+..+..+.+. .+++|.++ -+|..+..++.+.
T Consensus       362 i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt  438 (565)
T KOG0472|consen  362 ITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLT  438 (565)
T ss_pred             hhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcce
Confidence            46777888888887 88888875332  2667888888887 667666555544433 34444443 6677777777777


Q ss_pred             ccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc
Q 044353          352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR  431 (596)
Q Consensus       352 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  431 (596)
                      .++++++.....                     +.....+..|+.|+||.|.|. ..|..+..+..++++-.++|++...
T Consensus       439 ~L~L~NN~Ln~L---------------------P~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~v  496 (565)
T KOG0472|consen  439 FLDLSNNLLNDL---------------------PEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSV  496 (565)
T ss_pred             eeecccchhhhc---------------------chhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhcccccccc
Confidence            777766543222                     222334666999999999998 8999888888999999999999977


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353          432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  477 (596)
                      .++.+.++.+|.+|||.+|.+. .+|..+++|.+|++|++++|+|.
T Consensus       497 d~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr  541 (565)
T KOG0472|consen  497 DPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR  541 (565)
T ss_pred             ChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC
Confidence            7777999999999999999999 77888999999999999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=5.5e-33  Score=273.25  Aligned_cols=373  Identities=23%  Similarity=0.339  Sum_probs=309.6

Q ss_pred             ccCCCCCCEEECcCCccc-ccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCC
Q 044353           17 LGRFKTLRALDLSNNTVN-GPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ   95 (596)
Q Consensus        17 l~~l~~L~~L~ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   95 (596)
                      .+-++..+-.|+++|.++ +.+|.....+++++.|.|...++. .+|. .++.+.+|++|.+++|++.. ....++.++.
T Consensus         3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPe-EL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~   79 (1255)
T KOG0444|consen    3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPE-ELSRLQKLEHLSMAHNQLIS-VHGELSDLPR   79 (1255)
T ss_pred             ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChH-HHHHHhhhhhhhhhhhhhHh-hhhhhccchh
Confidence            356788899999999999 568999999999999999999997 8998 89999999999999999864 3456788999


Q ss_pred             ccEEEccCCCCC-CCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353           96 LAFLELRSCHLG-PRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS  174 (596)
Q Consensus        96 L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  174 (596)
                      |+.+.+++|+++ +.+|..+-.+..|.+|||+.|++. .+|..+-. -+++-.|++++|+|..                 
T Consensus        80 LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~-AKn~iVLNLS~N~Iet-----------------  140 (1255)
T KOG0444|consen   80 LRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEY-AKNSIVLNLSYNNIET-----------------  140 (1255)
T ss_pred             hHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhh-hcCcEEEEcccCcccc-----------------
Confidence            999999999986 356777888999999999999997 78888744 4788888888888742                 


Q ss_pred             CCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCc
Q 044353          175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM  254 (596)
Q Consensus       175 ~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  254 (596)
                                      +|..++.   ++..|-.|||++|++.. .|.....+..|++|++++|.+.-..-..+..+++|+
T Consensus       141 ----------------IPn~lfi---nLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~  200 (1255)
T KOG0444|consen  141 ----------------IPNSLFI---NLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLS  200 (1255)
T ss_pred             ----------------CCchHHH---hhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhh
Confidence                            2222211   24567789999999975 555678899999999999987744444556778899


Q ss_pred             EEEccCCccc-ccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353          255 SLNLRNNRLS-GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAY  333 (596)
Q Consensus       255 ~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  333 (596)
                      .|.+++..-+ .-+|.++..+.+|..+|++.|.+. .+|+.++ .+++|+.|+|++|.++ ++......+.+|++|+++.
T Consensus       201 vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly-~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSr  277 (1255)
T KOG0444|consen  201 VLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLY-KLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSR  277 (1255)
T ss_pred             hhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHh-hhhhhheeccCcCcee-eeeccHHHHhhhhhhcccc
Confidence            9999987644 357888899999999999999998 8999988 7999999999999998 5555666678899999999


Q ss_pred             CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc-ccCCccc
Q 044353          334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS-GEIPVEV  412 (596)
Q Consensus       334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~  412 (596)
                      |+++ .+|+++..++.                                            |+.|.+.+|+++ +-+|..+
T Consensus       278 NQLt-~LP~avcKL~k--------------------------------------------L~kLy~n~NkL~FeGiPSGI  312 (1255)
T KOG0444|consen  278 NQLT-VLPDAVCKLTK--------------------------------------------LTKLYANNNKLTFEGIPSGI  312 (1255)
T ss_pred             chhc-cchHHHhhhHH--------------------------------------------HHHHHhccCcccccCCccch
Confidence            9998 78888776555                                            556666677664 2588899


Q ss_pred             cCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCC
Q 044353          413 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIP  481 (596)
Q Consensus       413 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~  481 (596)
                      +.+..|+.+..++|.+. ..|+.+..+..|+.|.|++|++. .+|+++.-++.|+.||+..|+=....|
T Consensus       313 GKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  313 GKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             hhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            99999999999999998 99999999999999999999999 789999999999999999998654444

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.96  E-value=3.3e-32  Score=279.81  Aligned_cols=246  Identities=28%  Similarity=0.377  Sum_probs=134.1

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      .+++.+++++|.+.+ +|.+++.+.+|+.++..+|.++ .+|..+....+|+.|....|.+. -.|....+.+.|++|+|
T Consensus       241 ~nl~~~dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL  317 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDL  317 (1081)
T ss_pred             ccceeeecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeee
Confidence            477777777777765 4477777777777777777775 66666777777777777777777 34445566777777777


Q ss_pred             cCCcccccCchhhhhhccc-ccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353          283 GENELVGNIPTWIGETFSR-LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG  361 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~  361 (596)
                      ..|++. .+|+.++..... |..+..+.|++.......=...+.|+.|++.+|.++...-..+.++..|+.++++++...
T Consensus       318 ~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~  396 (1081)
T KOG0618|consen  318 QSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN  396 (1081)
T ss_pred             hhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc
Confidence            777775 666655433222 444444444444221111122344555555555555443333333333333333322211


Q ss_pred             ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353          362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  441 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  441 (596)
                      .++.                    .....+..|+.|+||+|.++ .+|.++..++.|++|...+|++. ..| .+..++.
T Consensus       397 ~fpa--------------------s~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~q  453 (1081)
T KOG0618|consen  397 SFPA--------------------SKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQ  453 (1081)
T ss_pred             cCCH--------------------HHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCc
Confidence            1110                    11122344555666666665 45555666666666666666655 444 4555666


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCCEEeccccc
Q 044353          442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN  475 (596)
Q Consensus       442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  475 (596)
                      |+.+|+|.|+++...-..-...++|++||+++|.
T Consensus       454 L~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  454 LKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             ceEEecccchhhhhhhhhhCCCcccceeeccCCc
Confidence            6666666666654322111222556666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.95  E-value=6.9e-30  Score=262.83  Aligned_cols=432  Identities=22%  Similarity=0.263  Sum_probs=309.5

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +||+++|++. ..|..+..+.+|+.|+++.|.|. ..|.+..++.+|++|.|.+|++. .+|. .+..+++|++|++++|
T Consensus        49 ~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~-~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   49 SLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPA-SISELKNLQYLDLSFN  124 (1081)
T ss_pred             Eeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCch-hHHhhhcccccccchh
Confidence            4799999988 68999999999999999999998 56888999999999999999987 8887 8999999999999999


Q ss_pred             eeeeEeCCCCCCCC-------------------CccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhc
Q 044353           81 SLVFKINPNWVPPF-------------------QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS  141 (596)
Q Consensus        81 ~l~~~~~~~~~~l~-------------------~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~  141 (596)
                      .+... |..+..+.                   .++.+++..|.+.+.++..+..++.  .|++..|.+. ....   ..
T Consensus       125 ~f~~~-Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~dl---s~  197 (1081)
T KOG0618|consen  125 HFGPI-PLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLDL---SN  197 (1081)
T ss_pred             ccCCC-chhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhhh---hh
Confidence            87532 22222222                   2556666666666666666666655  6888888765 2221   12


Q ss_pred             CCCCcEEEcccccccccCCCC---------CCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCc
Q 044353          142 IFQYDYLNVSGNQIYGGVPKF---------DSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS  211 (596)
Q Consensus       142 l~~L~~L~l~~n~l~~~~~~~---------~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~  211 (596)
                      +.+|+.+....|+++...-..         ..........|.-.. +.++++++.+.+.. +++.    .+.+|+.+...
T Consensus       198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp-~wi~----~~~nle~l~~n  272 (1081)
T KOG0618|consen  198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLP-EWIG----ACANLEALNAN  272 (1081)
T ss_pred             ccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcch-HHHH----hcccceEeccc
Confidence            344444444444443211000         000000111121122 78999999987543 4444    48999999999


Q ss_pred             CCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCC-CCEEEccCCccccc
Q 044353          212 KNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSI-LKALDMGENELVGN  290 (596)
Q Consensus       212 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~~~  290 (596)
                      +|.+. ..|..+....+|+.|.+.+|.+. -+|+...++.+|++|+|..|++....+..|.-... |..+..+.|++. .
T Consensus       273 ~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~-~  349 (1081)
T KOG0618|consen  273 HNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS-T  349 (1081)
T ss_pred             chhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc-c
Confidence            99995 57777888899999999999998 67777888999999999999999555444444443 677777777775 5


Q ss_pred             CchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCC
Q 044353          291 IPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDN  370 (596)
Q Consensus       291 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~  370 (596)
                      .|..-....+.|+.|++.+|.++...-..+.+.+.|+.|+|++|.+.......+.++..|+.++++++.......     
T Consensus       350 lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~-----  424 (1081)
T KOG0618|consen  350 LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPD-----  424 (1081)
T ss_pred             cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhH-----
Confidence            665444456778888888888876665667777888888888888874444566778888888887765432221     


Q ss_pred             ceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCC
Q 044353          371 EIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN  450 (596)
Q Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  450 (596)
                                      -...++.|++|...+|++. ..| .+..++.|+.+|+|.|+++...-......++|++||+++|
T Consensus       425 ----------------tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN  486 (1081)
T KOG0618|consen  425 ----------------TVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGN  486 (1081)
T ss_pred             ----------------HHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCC
Confidence                            1223667899999999997 666 7899999999999999997544433333489999999999


Q ss_pred             cCcccCCccccCCCCCCEEecccc
Q 044353          451 QLSGQIPQSMSNLSFLNYLNLSNN  474 (596)
Q Consensus       451 ~l~~~~~~~~~~l~~L~~L~ls~N  474 (596)
                      .=.......|..+..+..+++.-|
T Consensus       487 ~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  487 TRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             cccccchhhhHHhhhhhheecccC
Confidence            744355566777777877777766

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.92  E-value=5.2e-28  Score=226.59  Aligned_cols=407  Identities=22%  Similarity=0.242  Sum_probs=197.5

Q ss_pred             CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC-CeeeeEeCCCCCCCCCccEEEc
Q 044353           23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG-NSLVFKINPNWVPPFQLAFLEL  101 (596)
Q Consensus        23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L  101 (596)
                      -..++|..|+|+.+.+.+|..+++||.||||.|+|+ .|...+|.+++.|.+|.+-+ |+|+.....+|.++..|+.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344555555555555555555555555555555555 44444555555554444433 5555555555555555555555


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccccc-CCCCCCCCCCc--cccCCCCC-
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGG-VPKFDSPSVPL--ITTPSLLG-  177 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~~~~~--~~~~~~~~-  177 (596)
                      .-|++.-.....|..++++..|.+.+|.+. .++...+..+.+++.+.+..|.+-.. .-.+.......  ....-+.. 
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~  226 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV  226 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence            555555555555556666666666555554 34444444455555555555542110 00000000000  00000000 


Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-cccCCCCCCcEEEcccccccccCCccCcCCCCCcEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL  256 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  256 (596)
                      ....+.+.++.......+-..   .+.+..-..+.+...++.| .+|..+++|++|++++|+++.+-+.+|.+...+++|
T Consensus       227 ~p~rl~~~Ri~q~~a~kf~c~---~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  227 SPYRLYYKRINQEDARKFLCS---LESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             chHHHHHHHhcccchhhhhhh---HHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            001111222211111111000   0111111112222222222 446667777777777777776666677777777777


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCc-----CCcccC----------
Q 044353          257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD-----FPIQLC----------  321 (596)
Q Consensus       257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~----------  321 (596)
                      .|..|++..+....|.++..|+.|+|.+|+|+ .+....|..+.+|..|.+-.|.+...     +.+++.          
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it-~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~C  382 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQIT-TVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRC  382 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeE-EEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCC
Confidence            77777776666666777777777777777776 55555555566666666655544210     000000          


Q ss_pred             -CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccE-EEc
Q 044353          322 -RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRS-IDI  399 (596)
Q Consensus       322 -~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-L~L  399 (596)
                       .--.++.++++...+.                        .+..+ +....       .......-...++-+.+ ..-
T Consensus       383 q~p~~~~~~~~~dv~~~------------------------~~~c~-~~ee~-------~~~~s~~cP~~c~c~~tVvRc  430 (498)
T KOG4237|consen  383 QSPGFVRQIPISDVAFG------------------------DFRCG-GPEEL-------GCLTSSPCPPPCTCLDTVVRC  430 (498)
T ss_pred             CCCchhccccchhcccc------------------------ccccC-Ccccc-------CCCCCCCCCCCcchhhhhHhh
Confidence             0001222222222221                        11000 00000       00000000001111211 122


Q ss_pred             cCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccc
Q 044353          400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  474 (596)
Q Consensus       400 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  474 (596)
                      |+..+. .+|..+  .....+|++.+|.++ .+|+.  .+.+| .+|+++|+++......|.+|.+|.+|-+++|
T Consensus       431 Snk~lk-~lp~~i--P~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  431 SNKLLK-LLPRGI--PVDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             cccchh-hcCCCC--CchhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence            333333 444332  234677899999998 67776  66788 8999999998777778999999999988876

>PLN03210 Resistant to P

Probab=99.90  E-value=4.8e-22  Score=228.17  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=77.3

Q ss_pred             CccccCCCCCCEEECcCCcc------cccCCccCcCCC-CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe
Q 044353           14 TNQLGRFKTLRALDLSNNTV------NGPIPLSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI   86 (596)
Q Consensus        14 ~~~l~~l~~L~~L~ls~n~i------~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~   86 (596)
                      +.+|.++++|+.|.+..+.+      ...+|+.|..++ +|+.|.+.++.+. .+|. .| ...+|++|++++|.+.. .
T Consensus       551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~-~f-~~~~L~~L~L~~s~l~~-L  626 (1153)
T PLN03210        551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPS-NF-RPENLVKLQMQGSKLEK-L  626 (1153)
T ss_pred             HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCC-cC-CccCCcEEECcCccccc-c
Confidence            34566677777777654432      223455555543 4777777776665 5554 33 35667777777666543 3


Q ss_pred             CCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc
Q 044353           87 NPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ  154 (596)
Q Consensus        87 ~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  154 (596)
                      +..+..+++|+.|+|+++.....+| .++.+++|+.|++++|.....+|..+. .+++|+.|++++|.
T Consensus       627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~-~L~~L~~L~L~~c~  692 (1153)
T PLN03210        627 WDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQ-YLNKLEDLDMSRCE  692 (1153)
T ss_pred             ccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhh-ccCCCCEEeCCCCC
Confidence            3445566667777776655333333 355666666666666544445555542 35666666666553

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.89  E-value=7.7e-26  Score=212.10  Aligned_cols=300  Identities=21%  Similarity=0.190  Sum_probs=233.5

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC-CcccccCChhhcCCCCCCEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN-NRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L  280 (596)
                      ++..++++|..|.|+.+.+.+|..+++|+.|||++|.|+.+.|++|.++++|..|.+.+ |+|+.+....|.++.+|+.|
T Consensus        66 P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL  145 (498)
T KOG4237|consen   66 PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL  145 (498)
T ss_pred             CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999988877766 99999888999999999999


Q ss_pred             EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc------------ccCCccccccc
Q 044353          281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS------------GTIPRCINNFS  348 (596)
Q Consensus       281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~------------~~~~~~~~~l~  348 (596)
                      .+.-|++. .++...+..++++..|.+..|.+.......|..+.+++.+.+..|++.            ...|..++...
T Consensus       146 llNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgar  224 (498)
T KOG4237|consen  146 LLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGAR  224 (498)
T ss_pred             hcChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccce
Confidence            99999997 888888889999999999999998554558899999999999988832            11122222211


Q ss_pred             cCcccCCCCCCCCccccCCCCCceeeee-------EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353          349 AMATTDSSDPNSGIFYASSGDNEIVEDA-------LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL  421 (596)
Q Consensus       349 ~L~~l~l~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  421 (596)
                      -.+-..+.+......... ......+..       ......-....+..+++|++|+|++|++++..+.+|.+...+++|
T Consensus       225 c~~p~rl~~~Ri~q~~a~-kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL  303 (498)
T KOG4237|consen  225 CVSPYRLYYKRINQEDAR-KFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQEL  303 (498)
T ss_pred             ecchHHHHHHHhcccchh-hhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhh
Confidence            111100000000000000 000000000       000000011225679999999999999999999999999999999


Q ss_pred             eccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCCC
Q 044353          422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCG  501 (596)
Q Consensus       422 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc~  501 (596)
                      .|..|++.......|.++..|+.|+|.+|+|+...|.+|..+.+|.+|+|-.|++.|.|.-.+....++.-...|||-|+
T Consensus       304 ~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq  383 (498)
T KOG4237|consen  304 YLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQ  383 (498)
T ss_pred             hcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCC
Confidence            99999998777788999999999999999999999999999999999999999999999888777777777788888888


Q ss_pred             CC
Q 044353          502 AP  503 (596)
Q Consensus       502 ~~  503 (596)
                      .|
T Consensus       384 ~p  385 (498)
T KOG4237|consen  384 SP  385 (498)
T ss_pred             CC
Confidence            65

>PLN03210 Resistant to P

Probab=99.89  E-value=1.2e-21  Score=224.86  Aligned_cols=338  Identities=20%  Similarity=0.226  Sum_probs=161.8

Q ss_pred             hhhhcCCCCcEEEccCCe------eeeEeCCCCCCCC-CccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353           64 IHFLNLTQLLVFRAHGNS------LVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR  136 (596)
Q Consensus        64 ~~~~~l~~L~~L~L~~n~------l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  136 (596)
                      .+|.++.+|+.|.+..+.      +....+..+..++ +|+.|.+.++.+. .+|..+ ...+|+.|++.++++. .++.
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~  628 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWD  628 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-cccc
Confidence            355666666666654332      2223334444433 4666666665554 333333 3456666666666554 3333


Q ss_pred             hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC
Q 044353          137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS  216 (596)
Q Consensus       137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~  216 (596)
                      .+ ..+++|+.|+++++......|.                                     ++.+++|+.|++++|...
T Consensus       629 ~~-~~l~~Lk~L~Ls~~~~l~~ip~-------------------------------------ls~l~~Le~L~L~~c~~L  670 (1153)
T PLN03210        629 GV-HSLTGLRNIDLRGSKNLKEIPD-------------------------------------LSMATNLETLKLSDCSSL  670 (1153)
T ss_pred             cc-ccCCCCCEEECCCCCCcCcCCc-------------------------------------cccCCcccEEEecCCCCc
Confidence            33 2345666666655432211111                                     112345555555554433


Q ss_pred             CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh
Q 044353          217 EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG  296 (596)
Q Consensus       217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  296 (596)
                      ..+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|......|..   ..+|+.|++++|.+. .+|..+ 
T Consensus       671 ~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-  744 (1153)
T PLN03210        671 VELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-  744 (1153)
T ss_pred             cccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-
Confidence            4444445555555555555543222344333 4455555555554433233321   234555555555543 444433 


Q ss_pred             hhcccccEEEccCCcCc-------CcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCC
Q 044353          297 ETFSRLMILNLRSNKFH-------GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD  369 (596)
Q Consensus       297 ~~l~~L~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  369 (596)
                       .+++|+.|.+.++...       ...+......++|+.|++++|+..+.+|..++++++|+.+++++|......+.   
T Consensus       745 -~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~---  820 (1153)
T PLN03210        745 -RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT---  820 (1153)
T ss_pred             -cccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC---
Confidence             2444554444432211       00111112234555555555544445555555555555555544321111000   


Q ss_pred             CceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCC
Q 044353          370 NEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA  449 (596)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~  449 (596)
                                       . ..+++|+.|++++|......|..   .++|+.|+|++|.++ .+|..+..+++|+.|++++
T Consensus       821 -----------------~-~~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~  878 (1153)
T PLN03210        821 -----------------G-INLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNG  878 (1153)
T ss_pred             -----------------C-CCccccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCC
Confidence                             0 02455666666666443334332   245667777777666 5666666677777777766


Q ss_pred             C-cCcccCCccccCCCCCCEEeccccc
Q 044353          450 N-QLSGQIPQSMSNLSFLNYLNLSNNN  475 (596)
Q Consensus       450 N-~l~~~~~~~~~~l~~L~~L~ls~N~  475 (596)
                      | ++. .+|..+..+++|+.+++++|.
T Consensus       879 C~~L~-~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        879 CNNLQ-RVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             CCCcC-ccCcccccccCCCeeecCCCc
Confidence            3 333 455556666667777766664

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2e-20  Score=199.55  Aligned_cols=128  Identities=28%  Similarity=0.363  Sum_probs=101.6

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      .+|+.|++++|.+.+ +|..   .++|+.|++++|.++ .+|..   ..+|+.|++++|.+.+ .|..   .++|+.|++
T Consensus       342 ~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdL  409 (788)
T PRK15387        342 SGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMV  409 (788)
T ss_pred             cccceEecCCCccCC-CCCC---Ccccceehhhccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEc
Confidence            478999999999986 4432   357888999999988 45643   3578999999999985 4432   367999999


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS  348 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  348 (596)
                      ++|++. .+|..    ..+|+.|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+.
T Consensus       410 S~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        410 SGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             cCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            999997 67753    346888999999998 6888899999999999999999987777665443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=2.8e-20  Score=198.43  Aligned_cols=202  Identities=27%  Similarity=0.319  Sum_probs=115.4

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      ++|+.|++++|.+.. +|..   .++|+.|++++|+++ .+|.   ..++|+.|++++|.++++ |..   ..+|+.|++
T Consensus       262 ~sL~~L~Ls~N~L~~-Lp~l---p~~L~~L~Ls~N~Lt-~LP~---~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~L  329 (788)
T PRK15387        262 PGLLELSIFSNPLTH-LPAL---PSGLCKLWIFGNQLT-SLPV---LPPGLQELSVSDNQLASL-PAL---PSELCKLWA  329 (788)
T ss_pred             cccceeeccCCchhh-hhhc---hhhcCEEECcCCccc-cccc---cccccceeECCCCccccC-CCC---ccccccccc
Confidence            355555555555543 2221   134555555555555 2332   124555556655555532 221   123555555


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      ++|.+. .+|..    ..+|+.|++++|+++ .+|..   .++|+.|++++|.++ .+|..                   
T Consensus       330 s~N~L~-~LP~l----p~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l-------------------  380 (788)
T PRK15387        330 YNNQLT-SLPTL----PSGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL-------------------  380 (788)
T ss_pred             ccCccc-ccccc----ccccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc-------------------
Confidence            555554 34431    135556666666555 23321   234555555555554 23321                   


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  442 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  442 (596)
                                                  ..+|+.|++++|.++ .+|..   .++|+.|++++|+++ .+|..   ..+|
T Consensus       381 ----------------------------~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L  424 (788)
T PRK15387        381 ----------------------------PSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML---PSGL  424 (788)
T ss_pred             ----------------------------ccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc---hhhh
Confidence                                        234777888888887 35543   356888888888887 45653   3467


Q ss_pred             CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353          443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      +.|++++|+++ .+|..+..+++|+.|++++|++++..+.
T Consensus       425 ~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~  463 (788)
T PRK15387        425 LSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  463 (788)
T ss_pred             hhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence            78888888888 6677788888888888888888866543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.5e-18  Score=186.51  Aligned_cols=204  Identities=25%  Similarity=0.426  Sum_probs=117.9

Q ss_pred             CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 044353          204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG  283 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  283 (596)
                      +|+.|++++|.++. +|..+.  ++|+.|++++|.+. .+|..+.  .+|+.|++++|.+.. +|..+.  ++|+.|+++
T Consensus       221 nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls  291 (754)
T PRK15370        221 NIKTLYANSNQLTS-IPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC-LPENLP--EELRYLSVY  291 (754)
T ss_pred             CCCEEECCCCcccc-CChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc-cccccC--CCCcEEECC
Confidence            56666666666653 333322  35666666666665 4444432  356666666666663 343332  356666666


Q ss_pred             CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcc
Q 044353          284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF  363 (596)
Q Consensus       284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~  363 (596)
                      +|+++ .+|..+.   ++|+.|++++|.++ .+|..+.  ++|+.|++++|.+++ +|..+                   
T Consensus       292 ~N~Lt-~LP~~lp---~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l-------------------  344 (754)
T PRK15370        292 DNSIR-TLPAHLP---SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASL-------------------  344 (754)
T ss_pred             CCccc-cCcccch---hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhh-------------------
Confidence            66665 4554332   35666666666666 2343322  466666666666652 33322                   


Q ss_pred             ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353          364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  443 (596)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  443 (596)
                                                 .++|+.|++++|+++ .+|..+  .++|+.|+|++|+++ .+|..+.  ..|+
T Consensus       345 ---------------------------~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~  391 (754)
T PRK15370        345 ---------------------------PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQ  391 (754)
T ss_pred             ---------------------------cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHH
Confidence                                       234677777777776 455544  256777777777777 4555443  3577


Q ss_pred             EEECCCCcCcccCCcc----ccCCCCCCEEecccccCc
Q 044353          444 SLDFSANQLSGQIPQS----MSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       444 ~L~Ls~N~l~~~~~~~----~~~l~~L~~L~ls~N~l~  477 (596)
                      .|++++|+++ .+|..    +..++.+..+++.+|+++
T Consensus       392 ~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        392 IMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            7777777777 33433    333466777777777775

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=9.1e-18  Score=180.56  Aligned_cols=247  Identities=26%  Similarity=0.374  Sum_probs=173.5

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEE
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE  100 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  100 (596)
                      .+...|+++++.++. +|..+.  ++|+.|+|++|+++ .+|...+   .+|++|++++|.++.. +..+  ...|+.|+
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~---~nL~~L~Ls~N~LtsL-P~~l--~~~L~~L~  247 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ---GNIKTLYANSNQLTSI-PATL--PDTIQEME  247 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc---cCCCEEECCCCccccC-Chhh--hccccEEE
Confidence            356788888888874 565543  57888888888887 6775332   4788888888887633 3322  23688888


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceE
Q 044353          101 LRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF  180 (596)
Q Consensus       101 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l  180 (596)
                      +++|.+. .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|++++|+++.. |                    
T Consensus       248 Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~Ls~N~Lt~L-P--------------------  299 (754)
T PRK15370        248 LSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLSVYDNSIRTL-P--------------------  299 (754)
T ss_pred             CcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEECCCCccccC-c--------------------
Confidence            8888876 4455443  47888888888887 4665442   4678888888776421 1                    


Q ss_pred             EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC
Q 044353          181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN  260 (596)
Q Consensus       181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  260 (596)
                                  ..+      .++|+.|++++|.++. +|..+  .++|+.|++++|.++ .+|..+.  ++|+.|++++
T Consensus       300 ------------~~l------p~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~  355 (754)
T PRK15370        300 ------------AHL------PSGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALT-SLPASLP--PELQVLDVSK  355 (754)
T ss_pred             ------------ccc------hhhHHHHHhcCCcccc-CCccc--cccceeccccCCccc-cCChhhc--CcccEEECCC
Confidence                        100      2367788888888875 34333  257888889888887 4665553  6889999999


Q ss_pred             CcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc----CCCCCCcEEeCCCCcC
Q 044353          261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL----CRLGSLQILDVAYNSL  336 (596)
Q Consensus       261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~----~~l~~L~~L~l~~n~l  336 (596)
                      |.+. ..|..+  .++|+.|++++|.++ .+|..+.   ..|+.|++++|.+. .+|..+    ..++.+..+++.+|++
T Consensus       356 N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~---~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        356 NQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP---AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             CCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH---HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCc
Confidence            9888 455544  368999999999987 7887664   36888999999887 455443    4457888999999988


Q ss_pred             c
Q 044353          337 S  337 (596)
Q Consensus       337 ~  337 (596)
                      +
T Consensus       428 s  428 (754)
T PRK15370        428 S  428 (754)
T ss_pred             c
Confidence            6

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.73  E-value=2.9e-19  Score=178.72  Aligned_cols=85  Identities=18%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             ccccEEEccCCcccccCCcccc-----CcccCCeeeccCccCcc----cCCccccCCCCCCEEECCCCcCccc----CCc
Q 044353          392 NLVRSIDISKNNFSGEIPVEVT-----NLQGLQSLNLSHNLFTG----RIPDNIGVMRSIESLDFSANQLSGQ----IPQ  458 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~-----~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~l~~~----~~~  458 (596)
                      ++|+.|++++|.+++.....+.     ..+.|++|++++|.+++    .+...+..+++|+.+++++|.++..    ...
T Consensus       221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~  300 (319)
T cd00116         221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE  300 (319)
T ss_pred             CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH
Confidence            3455555555555432111111     23567777777776652    2223445556777777777777743    233


Q ss_pred             cccCC-CCCCEEecccccC
Q 044353          459 SMSNL-SFLNYLNLSNNNL  476 (596)
Q Consensus       459 ~~~~l-~~L~~L~ls~N~l  476 (596)
                      .+... +.|+.+++.+|++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         301 SLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHhhcCCchhhcccCCCCC
Confidence            33344 5677777777654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=5.6e-19  Score=176.67  Aligned_cols=277  Identities=22%  Similarity=0.216  Sum_probs=141.0

Q ss_pred             eeecCCCcc-ccCCccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCcc------ccChhhhhcCC
Q 044353            2 LFLRRSQFY-GHLTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNG------TVSEIHFLNLT   70 (596)
Q Consensus         2 l~L~~n~l~-~~~~~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~------~~~~~~~~~l~   70 (596)
                      |+|..++++ ...+..+..+.+|+.|+++++.++..    ++..+...++|++|+++++.+.+      .++. .+..++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~-~l~~~~   81 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQ-GLTKGC   81 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHH-HHHhcC
Confidence            677888887 34566667778888888888887532    44456667778888888877651      1111 455566


Q ss_pred             CCcEEEccCCeeeeEeCCCCCCCCC---ccEEEccCCCCCC----CcchhhcCC-CCCcEEEcccCcCcccCChhHHhcC
Q 044353           71 QLLVFRAHGNSLVFKINPNWVPPFQ---LAFLELRSCHLGP----RFPLWLQSQ-KKLYYLDISSTRISAKIPRGFWNSI  142 (596)
Q Consensus        71 ~L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~i~~~~~~~~~~~l  142 (596)
                      +|++|++++|.+....+..+..+.+   |++|++++|++..    .+...+..+ ++|+.|++++|.+++.....+.   
T Consensus        82 ~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~---  158 (319)
T cd00116          82 GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALA---  158 (319)
T ss_pred             ceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHH---
Confidence            7777777666654333332222222   5555555555442    111223333 4555555555554422211111   


Q ss_pred             CCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----
Q 044353          143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----  218 (596)
Q Consensus       143 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----  218 (596)
                                                                            ..+..+++|++|++++|.+.+.    
T Consensus       159 ------------------------------------------------------~~~~~~~~L~~L~l~~n~l~~~~~~~  184 (319)
T cd00116         159 ------------------------------------------------------KALRANRDLKELNLANNGIGDAGIRA  184 (319)
T ss_pred             ------------------------------------------------------HHHHhCCCcCEEECcCCCCchHHHHH
Confidence                                                                  1111133444555555444321    


Q ss_pred             CCcccCCCCCCcEEEcccccccc----cCCccCcCCCCCcEEEccCCcccccCChhhc-----CCCCCCEEEccCCcccc
Q 044353          219 IPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSGIIPTSFR-----NLSILKALDMGENELVG  289 (596)
Q Consensus       219 ~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~  289 (596)
                      ++..+..+++|+.|++++|.+++    .+...+..+++|++|++++|.+.+.....+.     ..+.|+.|++++|.+++
T Consensus       185 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~  264 (319)
T cd00116         185 LAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITD  264 (319)
T ss_pred             HHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCc
Confidence            11122333455555555555442    1223344455666666666665532222221     13566677777666642


Q ss_pred             cCchhh---hhhcccccEEEccCCcCcCc----CCcccCCC-CCCcEEeCCCCcC
Q 044353          290 NIPTWI---GETFSRLMILNLRSNKFHGD----FPIQLCRL-GSLQILDVAYNSL  336 (596)
Q Consensus       290 ~~~~~~---~~~l~~L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~l~~n~l  336 (596)
                      .....+   ...+++|+++++++|.+...    ....+... +.|+++++.+|++
T Consensus       265 ~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         265 DGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             HHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence            111111   11345677777777766633    23333334 5677777776653

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.9e-18  Score=142.41  Aligned_cols=90  Identities=23%  Similarity=0.448  Sum_probs=66.1

Q ss_pred             ccEEEccCCcccc-cCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          394 VRSIDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       394 L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      |+.||+++|++.+ ..|..|..++.|+.|+|+.|.+. .+|..++.+++|+.|.+++|.+. ..|..++.+..|+.|.+.
T Consensus       104 levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiq  181 (264)
T KOG0617|consen  104 LEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQ  181 (264)
T ss_pred             hhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcc
Confidence            3444444444432 45667777788888888888887 77777888888888888888887 677788888888888888


Q ss_pred             cccCccCCCCCCc
Q 044353          473 NNNLNGEIPSSTQ  485 (596)
Q Consensus       473 ~N~l~~~~~~~~~  485 (596)
                      +|+++...|+..+
T Consensus       182 gnrl~vlppel~~  194 (264)
T KOG0617|consen  182 GNRLTVLPPELAN  194 (264)
T ss_pred             cceeeecChhhhh
Confidence            8888766665433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.61  E-value=1.2e-17  Score=139.51  Aligned_cols=178  Identities=26%  Similarity=0.519  Sum_probs=105.6

Q ss_pred             CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEe
Q 044353          251 NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILD  330 (596)
Q Consensus       251 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  330 (596)
                      ...+.|.|++|+++ ..|..++.+.+|+.|++.+|++. .+|..+. .+++|++|+++-|++. ..|..|+.+|.|+.||
T Consensus        33 s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~is-sl~klr~lnvgmnrl~-~lprgfgs~p~levld  108 (264)
T KOG0617|consen   33 SNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSIS-SLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD  108 (264)
T ss_pred             hhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhh-hchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence            33444444444444 23334445555555555555554 5555544 4555555555555554 5566666666666666


Q ss_pred             CCCCcCcc-cCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCC
Q 044353          331 VAYNSLSG-TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP  409 (596)
Q Consensus       331 l~~n~l~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~  409 (596)
                      +.+|++.. .+|..|..                                            +..|+-|.++.|++. .+|
T Consensus       109 ltynnl~e~~lpgnff~--------------------------------------------m~tlralyl~dndfe-~lp  143 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFY--------------------------------------------MTTLRALYLGDNDFE-ILP  143 (264)
T ss_pred             ccccccccccCCcchhH--------------------------------------------HHHHHHHHhcCCCcc-cCC
Confidence            66666542 23444333                                            233555666677775 677


Q ss_pred             ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC---CCCEEecccccCccC
Q 044353          410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS---FLNYLNLSNNNLNGE  479 (596)
Q Consensus       410 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~---~L~~L~ls~N~l~~~  479 (596)
                      ..++.+++|+-|.+..|.+. ..|..++.++.|+.|.+.+|+++ .+|..++.+.   +=+.+.+.+|++...
T Consensus       144 ~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v~r~E~NPwv~p  214 (264)
T KOG0617|consen  144 PDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQVMRMEENPWVNP  214 (264)
T ss_pred             hhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHHHhhhhCCCCCh
Confidence            77888888888888888876 67888888888888888888888 5555555432   223444555665433

>PLN03150 hypothetical protein; Provisional

Probab=99.54  E-value=1.3e-14  Score=155.86  Aligned_cols=116  Identities=36%  Similarity=0.679  Sum_probs=103.5

Q ss_pred             cccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      .++.|+|++|.+.+.+|..+..+++|+.|+|++|++.+.+|..++.+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCccCCCCCC--ccCccccccccCCC-CCCCCC-CCCC
Q 044353          473 NNNLNGEIPSST--QLQSFGASSFAGND-LCGAPL-SNCT  508 (596)
Q Consensus       473 ~N~l~~~~~~~~--~~~~l~~~~~~~n~-lc~~~~-~~c~  508 (596)
                      +|+++|.+|...  ....+..+.+.+|+ +|+.|. ..|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999998752  22345567889999 998753 3563

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.2e-13  Score=136.74  Aligned_cols=177  Identities=30%  Similarity=0.493  Sum_probs=148.8

Q ss_pred             CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcE
Q 044353          249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQI  328 (596)
Q Consensus       249 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  328 (596)
                      .+.--...|++.|++. +.|..+..+..|+.+.+..|.+. .+|..+. .+..|.+++|+.|.+. ..|..++.++ |+.
T Consensus        73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~-~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv  147 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAIC-NLEALTFLDLSSNQLS-HLPDGLCDLP-LKV  147 (722)
T ss_pred             cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhh-hhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence            3445567889999998 77888888888999999999987 8888887 7889999999999988 6777788776 899


Q ss_pred             EeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccC
Q 044353          329 LDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI  408 (596)
Q Consensus       329 L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~  408 (596)
                      |-+++|+++ .+|..++.                                            ..+|..||.+.|++. .+
T Consensus       148 li~sNNkl~-~lp~~ig~--------------------------------------------~~tl~~ld~s~nei~-sl  181 (722)
T KOG0532|consen  148 LIVSNNKLT-SLPEEIGL--------------------------------------------LPTLAHLDVSKNEIQ-SL  181 (722)
T ss_pred             EEEecCccc-cCCccccc--------------------------------------------chhHHHhhhhhhhhh-hc
Confidence            999999988 67776653                                            344778888899987 78


Q ss_pred             CccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       409 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      |..+.++.+|+.|++..|++. ..|..+..+ .|..||+|.|+++ .+|-.|.+|..|++|-|.+|++...
T Consensus       182 psql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  182 PSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC
Confidence            888999999999999999998 677777744 6889999999999 7888999999999999999999743

>PLN03150 hypothetical protein; Provisional

Probab=99.26  E-value=2.1e-11  Score=131.30  Aligned_cols=114  Identities=30%  Similarity=0.524  Sum_probs=100.8

Q ss_pred             CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353          325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF  404 (596)
Q Consensus       325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  404 (596)
                      .++.|+|++|.+.+.+|..+..+                                            ++|+.|+|++|.+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L--------------------------------------------~~L~~L~Ls~N~l  454 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKL--------------------------------------------RHLQSINLSGNSI  454 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCC--------------------------------------------CCCCEEECCCCcc
Confidence            37788999999988888777654                                            4488999999999


Q ss_pred             cccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCccCCCC
Q 044353          405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~  482 (596)
                      .+.+|..+..+++|+.|+|++|++++.+|+.++.+++|+.|+|++|++++.+|..+..+ .++..+++.+|+..|.+|.
T Consensus       455 ~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~  533 (623)
T PLN03150        455 RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG  533 (623)
T ss_pred             cCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999988764 5678999999988776553

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.24  E-value=1.9e-12  Score=118.34  Aligned_cols=222  Identities=19%  Similarity=0.232  Sum_probs=128.3

Q ss_pred             CCCCccEEeCcCCc--------CCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc
Q 044353          201 FSKNIEFLKLSKNH--------FSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR  272 (596)
Q Consensus       201 ~~~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  272 (596)
                      .+..|..|..+...        +....|..+.-+.+|+.+.++.+.-.. +.+....-|.|+++.+.+..+... | .+-
T Consensus       180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~-i~~~~~~kptl~t~~v~~s~~~~~-~-~l~  256 (490)
T KOG1259|consen  180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTEN-IVDIELLKPTLQTICVHNTTIQDV-P-SLL  256 (490)
T ss_pred             hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhh-eeceeecCchhheeeeeccccccc-c-ccc
Confidence            35567777666532        222234444556677778887775432 222222336677777666555422 1 111


Q ss_pred             CCCCCCEEEcc-----CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCcccccc
Q 044353          273 NLSILKALDMG-----ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNF  347 (596)
Q Consensus       273 ~l~~L~~L~L~-----~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  347 (596)
                      .+..+....-+     .-.....++.|     ..|+.+||++|.++ .+.++..-.|.++.|++++|.+...  ..+.  
T Consensus       257 pe~~~~D~~~~E~~t~~G~~~~~~dTW-----q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa--  326 (490)
T KOG1259|consen  257 PETILADPSGSEPSTSNGSALVSADTW-----QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLA--  326 (490)
T ss_pred             chhhhcCccCCCCCccCCceEEecchH-----hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhh--
Confidence            12222111111     11111122323     34777888888777 5666777777888888888877621  1111  


Q ss_pred             ccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCcc
Q 044353          348 SAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL  427 (596)
Q Consensus       348 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~  427 (596)
                                                                .+++|+.||||+|.++ .+..+-..+.+.++|.|++|.
T Consensus       327 ------------------------------------------~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~  363 (490)
T KOG1259|consen  327 ------------------------------------------ELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNK  363 (490)
T ss_pred             ------------------------------------------hcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhh
Confidence                                                      1455777778887776 455555667778888888887


Q ss_pred             CcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEecccccCccCC
Q 044353          428 FTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLSNNNLNGEI  480 (596)
Q Consensus       428 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls~N~l~~~~  480 (596)
                      +.  ....++.+=+|..||+++|+|.... -..++++|.|+++.|.+|++.+..
T Consensus       364 iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  364 IE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             Hh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            75  2234566677778888888877442 245777788888888888877543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.22  E-value=4.7e-13  Score=132.48  Aligned_cols=213  Identities=26%  Similarity=0.405  Sum_probs=168.8

Q ss_pred             EeCcCCcCCCCCCcccC-CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCc
Q 044353          208 LKLSKNHFSEDIPDCWM-NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE  286 (596)
Q Consensus       208 L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~  286 (596)
                      |.|++-++......++. .+.--...+++.|++. .+|..+..+..|+.+.|+.|.+. .+|..+.++..|..++|+.|+
T Consensus        55 l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~Nq  132 (722)
T KOG0532|consen   55 LLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQ  132 (722)
T ss_pred             cccccchhhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccch
Confidence            44555444432222222 2334456889999998 88888888889999999999999 778889999999999999999


Q ss_pred             ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC
Q 044353          287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS  366 (596)
Q Consensus       287 l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~  366 (596)
                      +. .+|..++  .--|+.|-+++|+++ .+|..++..+.|..||.+.|.+. .+|..++.+.                  
T Consensus       133 lS-~lp~~lC--~lpLkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~------------------  189 (722)
T KOG0532|consen  133 LS-HLPDGLC--DLPLKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT------------------  189 (722)
T ss_pred             hh-cCChhhh--cCcceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH------------------
Confidence            97 8999888  345999999999998 78888888999999999999988 6666655544                  


Q ss_pred             CCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEE
Q 044353          367 SGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLD  446 (596)
Q Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  446 (596)
                                                +|+.|.+..|++. ..|+.+.. -.|..||+|.|++. .+|-.|..|+.|++|.
T Consensus       190 --------------------------slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~  240 (722)
T KOG0532|consen  190 --------------------------SLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQ  240 (722)
T ss_pred             --------------------------HHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-ecchhhhhhhhheeee
Confidence                                      4777888888887 67777774 45899999999998 8999999999999999


Q ss_pred             CCCCcCcccCCccccC---CCCCCEEeccccc
Q 044353          447 FSANQLSGQIPQSMSN---LSFLNYLNLSNNN  475 (596)
Q Consensus       447 Ls~N~l~~~~~~~~~~---l~~L~~L~ls~N~  475 (596)
                      |.+|.++ ..|..+..   ..-.++|+...++
T Consensus       241 LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  241 LENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             eccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            9999999 66655432   3345778887775

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=3.3e-11  Score=124.01  Aligned_cols=123  Identities=35%  Similarity=0.541  Sum_probs=67.1

Q ss_pred             EEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCC-CCcEEEccCCcccccCChhhcCCCCCCEEEccCC
Q 044353          207 FLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALN-SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN  285 (596)
Q Consensus       207 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  285 (596)
                      .++...+.+.. ....+..++.++.|++.+|.++ .++....... +|+.|++++|.+. ..|..+..+++|+.|++++|
T Consensus        97 ~l~~~~~~~~~-~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRS-NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeecccccccc-CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence            45555555532 1222344456666666666666 4444444443 6666666666666 33344556666666666666


Q ss_pred             cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCc
Q 044353          286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS  335 (596)
Q Consensus       286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  335 (596)
                      ++. .+|.... ..+.|+.|++++|++. .+|........|+++.+++|+
T Consensus       174 ~l~-~l~~~~~-~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~  220 (394)
T COG4886         174 DLS-DLPKLLS-NLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNS  220 (394)
T ss_pred             hhh-hhhhhhh-hhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCc
Confidence            665 5555443 3556666666666665 344333333445555555554

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.17  E-value=4.9e-12  Score=121.63  Aligned_cols=210  Identities=25%  Similarity=0.257  Sum_probs=125.7

Q ss_pred             CCCCCcEEEcccccccccCC--ccCcCCCCCcEEEccCCcccccC--ChhhcCCCCCCEEEccCCcccccCchhhhhhcc
Q 044353          225 NWPRLRMLNLGNNNFTGSLP--MSIGALNSLMSLNLRNNRLSGII--PTSFRNLSILKALDMGENELVGNIPTWIGETFS  300 (596)
Q Consensus       225 ~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~  300 (596)
                      ++.+|+.+.+.++.+. ..+  .....|++++.|||+.|-+....  ......+|+|+.|+++.|++.-.........++
T Consensus       119 n~kkL~~IsLdn~~V~-~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVE-DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hHHhhhheeecCcccc-ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            4556666667666654 222  24455677777777777666332  234456777777777777765222222223467


Q ss_pred             cccEEEccCCcCcC-cCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEE
Q 044353          301 RLMILNLRSNKFHG-DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV  379 (596)
Q Consensus       301 ~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~  379 (596)
                      .|+.|.++.|.++. .+...+..+|+|+.|++..|.....-....                                   
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~-----------------------------------  242 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST-----------------------------------  242 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh-----------------------------------
Confidence            77888888877762 223344567778888887775221111111                                   


Q ss_pred             eccceeecccccccccEEEccCCcccccC-CccccCcccCCeeeccCccCccc-CCcc-----ccCCCCCCEEECCCCcC
Q 044353          380 TKGFLVEYNSILNLVRSIDISKNNFSGEI-PVEVTNLQGLQSLNLSHNLFTGR-IPDN-----IGVMRSIESLDFSANQL  452 (596)
Q Consensus       380 ~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l~~~-~~~~-----~~~l~~L~~L~Ls~N~l  452 (596)
                               ..+..|+.|||++|++.... ......++.|+.|+++.+.+.+. .|++     ...+++|+.|+++.|++
T Consensus       243 ---------~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  243 ---------KILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             ---------hhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence                     11444777777777765221 13456778888888888877643 2332     35567888888888888


Q ss_pred             cccC-CccccCCCCCCEEecccccCccC
Q 044353          453 SGQI-PQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       453 ~~~~-~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      ...- -..+..+++|+.|....|.++.+
T Consensus       314 ~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  314 RDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccccchhhccchhhhhhccccccccc
Confidence            6321 13345567777778778877654

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.15  E-value=6.1e-11  Score=122.06  Aligned_cols=198  Identities=33%  Similarity=0.509  Sum_probs=122.0

Q ss_pred             EEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCC-CCCEEEccCCcccccCchhhhhhcccccEEEccC
Q 044353          231 MLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLS-ILKALDMGENELVGNIPTWIGETFSRLMILNLRS  309 (596)
Q Consensus       231 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~  309 (596)
                      .++...+.+. .....+..++.++.|++.+|.+..+ +......+ +|+.|++++|++. .+|..+. .++.|+.|++++
T Consensus        97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccc-cCchhhhcccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence            5666666653 2222344456777777777777743 33444553 7777777777776 6654444 577777777777


Q ss_pred             CcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccc
Q 044353          310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNS  389 (596)
Q Consensus       310 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  389 (596)
                      |.+. .+|......+.|+.|++++|.++ .+|.....                                           
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~-------------------------------------------  207 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIEL-------------------------------------------  207 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhh-------------------------------------------
Confidence            7777 44544446677777777777777 44443322                                           


Q ss_pred             ccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353          390 ILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       390 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  469 (596)
                       ...|+++++++|.+. ..+..+..+..+..+.+++|++. ..+..++.++.++.|++++|.++...+  +..+.+++.|
T Consensus       208 -~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L  282 (394)
T COG4886         208 -LSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLREL  282 (394)
T ss_pred             -hhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEE
Confidence             222555666666433 44555666666666666666665 335556666667777777777764333  6666667777


Q ss_pred             ecccccCccCCCC
Q 044353          470 NLSNNNLNGEIPS  482 (596)
Q Consensus       470 ~ls~N~l~~~~~~  482 (596)
                      ++++|.+....+.
T Consensus       283 ~~s~n~~~~~~~~  295 (394)
T COG4886         283 DLSGNSLSNALPL  295 (394)
T ss_pred             eccCccccccchh
Confidence            7777766654443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.14  E-value=2.7e-11  Score=106.64  Aligned_cols=131  Identities=22%  Similarity=0.155  Sum_probs=51.9

Q ss_pred             cccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCC
Q 044353           16 QLGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF   94 (596)
Q Consensus        16 ~l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   94 (596)
                      .+.+..++++|+|++|.|+.+  +.+. .+.+|+.|+|++|.|+ .++  .+..+++|++|++++|.++.........++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~-~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp   88 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQIT-KLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLP   88 (175)
T ss_dssp             ------------------------S--TT-TT--EEE-TTS--S---T--T----TT--EEE--SS---S-CHHHHHH-T
T ss_pred             ccccccccccccccccccccc--cchhhhhcCCCEEECCCCCCc-ccc--CccChhhhhhcccCCCCCCccccchHHhCC
Confidence            344566789999999999864  3455 5789999999999998 676  588899999999999999854322123588


Q ss_pred             CccEEEccCCCCCCCc-chhhcCCCCCcEEEcccCcCcccCC--hhHHhcCCCCcEEEcc
Q 044353           95 QLAFLELRSCHLGPRF-PLWLQSQKKLYYLDISSTRISAKIP--RGFWNSIFQYDYLNVS  151 (596)
Q Consensus        95 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~  151 (596)
                      +|+.|++++|++.... -..++.+++|+.|++.+|+++..-.  ..+...+++|+.||-.
T Consensus        89 ~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   89 NLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             T--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             cCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            9999999999986532 3567889999999999999874322  1234557899998754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.14  E-value=2.8e-12  Score=120.00  Aligned_cols=135  Identities=19%  Similarity=0.284  Sum_probs=73.1

Q ss_pred             CCCccEEeCcCCcCCCCCC----cccCCCCCCcEEEcccccccc----cCCccCcCCCCCcEEEccCCccccc----CCh
Q 044353          202 SKNIEFLKLSKNHFSEDIP----DCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSGI----IPT  269 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~  269 (596)
                      .++|+.+...+|++.....    ..|...+.|+.+.++.|.|..    ....+|..+++|+.|||.+|.++..    ...
T Consensus       156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak  235 (382)
T KOG1909|consen  156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK  235 (382)
T ss_pred             CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence            3456666666665543221    223444566666666665541    2223455666666666666666533    223


Q ss_pred             hhcCCCCCCEEEccCCcccccCchhhh----hhcccccEEEccCCcCcCc----CCcccCCCCCCcEEeCCCCcC
Q 044353          270 SFRNLSILKALDMGENELVGNIPTWIG----ETFSRLMILNLRSNKFHGD----FPIQLCRLGSLQILDVAYNSL  336 (596)
Q Consensus       270 ~~~~l~~L~~L~L~~n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l  336 (596)
                      .+..+++|+.+++++|.+.......+.    ...|+|+++.+.+|.++..    +.......+.|..|++++|.+
T Consensus       236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            445566666666666666544333332    2345667777777766521    122233456777777777776

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=2.1e-11  Score=117.37  Aligned_cols=209  Identities=22%  Similarity=0.230  Sum_probs=144.8

Q ss_pred             cCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCc-hhhhhhcccccEEEccCCcCcCcCCcc-cCCCC
Q 044353          248 GALNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIP-TWIGETFSRLMILNLRSNKFHGDFPIQ-LCRLG  324 (596)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~  324 (596)
                      +++.+|+.+.|.+..+..... .....+++++.|||+.|-++..-+ ..+.+.+|+|+.|+++.|++....... -..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            356788999999988873322 466789999999999998762222 244457899999999999886322221 22467


Q ss_pred             CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353          325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF  404 (596)
Q Consensus       325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  404 (596)
                      .|+.|.++.|.++-.   .+.+                                        ....+|+|+.|++++|..
T Consensus       198 ~lK~L~l~~CGls~k---~V~~----------------------------------------~~~~fPsl~~L~L~~N~~  234 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWK---DVQW----------------------------------------ILLTFPSLEVLYLEANEI  234 (505)
T ss_pred             hhheEEeccCCCCHH---HHHH----------------------------------------HHHhCCcHHHhhhhcccc
Confidence            888899999887621   1111                                        112277799999999954


Q ss_pred             cccCCccccCcccCCeeeccCccCcccC-CccccCCCCCCEEECCCCcCccc-CCcc-----ccCCCCCCEEecccccCc
Q 044353          405 SGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQ-IPQS-----MSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~-~~~~-----~~~l~~L~~L~ls~N~l~  477 (596)
                      .........-++.|++|||++|++.+.. ....+.++.|+.|+++.+.+..+ .|+.     ....++|++|+++.|++.
T Consensus       235 ~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~  314 (505)
T KOG3207|consen  235 ILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR  314 (505)
T ss_pred             cceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc
Confidence            3344445566788999999999986433 13468899999999999999854 3443     356799999999999985


Q ss_pred             c--CCCCCCccCccccccccCCCC
Q 044353          478 G--EIPSSTQLQSFGASSFAGNDL  499 (596)
Q Consensus       478 ~--~~~~~~~~~~l~~~~~~~n~l  499 (596)
                      .  .......+.++..+.+.+|++
T Consensus       315 ~w~sl~~l~~l~nlk~l~~~~n~l  338 (505)
T KOG3207|consen  315 DWRSLNHLRTLENLKHLRITLNYL  338 (505)
T ss_pred             cccccchhhccchhhhhhcccccc
Confidence            2  222334455566666667663

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.09  E-value=6.6e-12  Score=117.57  Aligned_cols=249  Identities=20%  Similarity=0.226  Sum_probs=146.5

Q ss_pred             CcCCCCCCEEECcCCcCcc----ccChhhhhcCCCCcEEEccCCeeeeE----e-------CCCCCCCCCccEEEccCCC
Q 044353           41 LGQIANLEYLDLSNNKLNG----TVSEIHFLNLTQLLVFRAHGNSLVFK----I-------NPNWVPPFQLAFLELRSCH  105 (596)
Q Consensus        41 ~~~l~~L~~L~Ls~n~i~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~-------~~~~~~l~~L~~L~L~~n~  105 (596)
                      ...+..+++++||+|.+..    .+.. .+.+.++|+..++++= +++.    +       ..++..+++|++|+|++|.
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~-~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA  103 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAK-VLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA  103 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHH-HHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence            3345556666666665531    1111 3445556666665541 1111    1       1244556788888888888


Q ss_pred             CCCCcchh----hcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC-ceE
Q 044353          106 LGPRFPLW----LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG-SIF  180 (596)
Q Consensus       106 l~~~~~~~----l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l  180 (596)
                      +....++.    ++.+..|++|.|.+|.+.-.--..+..   .|.++.  .++..                +..+. +++
T Consensus       104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~---al~~l~--~~kk~----------------~~~~~Lrv~  162 (382)
T KOG1909|consen  104 FGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR---ALFELA--VNKKA----------------ASKPKLRVF  162 (382)
T ss_pred             cCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH---HHHHHH--HHhcc----------------CCCcceEEE
Confidence            77555543    457889999999999875222122221   122221  11110                00000 344


Q ss_pred             EcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----CCcccCCCCCCcEEEcccccccc----cCCccCcCCCC
Q 044353          181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNS  252 (596)
Q Consensus       181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~  252 (596)
                      ...+|++.......+...+...+.|+.+.+..|.|...    ....|..+++|+.||+.+|.++.    .+...+..+++
T Consensus       163 i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~  242 (382)
T KOG1909|consen  163 ICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPH  242 (382)
T ss_pred             EeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccch
Confidence            44555554444444445555567888888888877532    22346778888888888888763    33445666788


Q ss_pred             CcEEEccCCcccccCChhhc-----CCCCCCEEEccCCcccccCc----hhhhhhcccccEEEccCCcCc
Q 044353          253 LMSLNLRNNRLSGIIPTSFR-----NLSILKALDMGENELVGNIP----TWIGETFSRLMILNLRSNKFH  313 (596)
Q Consensus       253 L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~n~l~~~~~----~~~~~~l~~L~~L~L~~n~l~  313 (596)
                      |+.|++++|.+......+|.     ..|.|+++.+.+|.++..-.    ..+. ..+.|..|+|++|++.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~-ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMA-EKPDLEKLNLNGNRLG  311 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHh-cchhhHHhcCCccccc
Confidence            88888888888865544432     46889999999998863211    1222 3678889999999884

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.08  E-value=3.4e-11  Score=110.22  Aligned_cols=224  Identities=19%  Similarity=0.248  Sum_probs=145.0

Q ss_pred             CCCCcEEEccccc--------ccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhh
Q 044353          226 WPRLRMLNLGNNN--------FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE  297 (596)
Q Consensus       226 l~~L~~L~l~~n~--------l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  297 (596)
                      ++.|..|.+++..        +...+|-.+.-+.+|+.+.++.+.-..+. ..-..-|.|+++...+..+. ..|.-.. 
T Consensus       181 ~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~-~~~~~kptl~t~~v~~s~~~-~~~~l~p-  257 (490)
T KOG1259|consen  181 CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIV-DIELLKPTLQTICVHNTTIQ-DVPSLLP-  257 (490)
T ss_pred             hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhhee-ceeecCchhheeeeeccccc-ccccccc-
Confidence            4567777776532        11233333444566777777766544221 11223456777776665543 2222111 


Q ss_pred             hcccccEEEccC-CcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353          298 TFSRLMILNLRS-NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA  376 (596)
Q Consensus       298 ~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  376 (596)
                       ...+....... .-..|..-.....+..|+++|+++|.|+ .+..+..                               
T Consensus       258 -e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~-~iDESvK-------------------------------  304 (490)
T KOG1259|consen  258 -ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLIT-QIDESVK-------------------------------  304 (490)
T ss_pred             -hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchh-hhhhhhh-------------------------------
Confidence             11122211111 1122333334455678899999999887 4443332                               


Q ss_pred             EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353          377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI  456 (596)
Q Consensus       377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  456 (596)
                                   ..|.++.|++|+|.+.. +. .+..+++|+.||||+|.++ .+..+-..+-++++|.|+.|.+... 
T Consensus       305 -------------L~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~La~N~iE~L-  367 (490)
T KOG1259|consen  305 -------------LAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKLAQNKIETL-  367 (490)
T ss_pred             -------------hccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeehhhhhHhhh-
Confidence                         26679999999999973 33 3888999999999999998 5666667788999999999988733 


Q ss_pred             CccccCCCCCCEEecccccCcc--CCCCCCccCccccccccCCCCCCCC
Q 044353          457 PQSMSNLSFLNYLNLSNNNLNG--EIPSSTQLQSFGASSFAGNDLCGAP  503 (596)
Q Consensus       457 ~~~~~~l~~L~~L~ls~N~l~~--~~~~~~~~~~l~~~~~~~n~lc~~~  503 (596)
                       +.+..+-+|..||+++|++..  .....+.++.++.+.+.+||+.+.+
T Consensus       368 -SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  368 -SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             -hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence             457778899999999999964  3455578888999999999976554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=6.1e-10  Score=98.08  Aligned_cols=122  Identities=26%  Similarity=0.401  Sum_probs=30.2

Q ss_pred             CCcEEEcccccccccCCccCc-CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEE
Q 044353          228 RLRMLNLGNNNFTGSLPMSIG-ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN  306 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  306 (596)
                      ++++|++++|.|+. +. .+. .+.+|+.|++++|.|+.+  +.+..+++|++|++++|.++ .+...+...+++|++|+
T Consensus        20 ~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            34444444444442 11 122 234444555555554432  12444455555555555554 33333322345555555


Q ss_pred             ccCCcCcCcC-CcccCCCCCCcEEeCCCCcCcccCC----ccccccccCcccCC
Q 044353          307 LRSNKFHGDF-PIQLCRLGSLQILDVAYNSLSGTIP----RCINNFSAMATTDS  355 (596)
Q Consensus       307 L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~l~l  355 (596)
                      +++|++...- -..+..+++|+.|++.+|++... +    ..+..+++|+.+|-
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence            5555544211 12344455555555555555422 2    13344555555543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.93  E-value=6.7e-10  Score=80.31  Aligned_cols=59  Identities=46%  Similarity=0.669  Sum_probs=33.7

Q ss_pred             cCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEeccccc
Q 044353          417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN  475 (596)
Q Consensus       417 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~  475 (596)
                      +|++|++++|+++...++.|.++++|++|++++|.++.+.++.|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            45555555555554444555555556666666555555555555566666666665554

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.88  E-value=1.6e-09  Score=78.37  Aligned_cols=61  Identities=33%  Similarity=0.483  Sum_probs=57.0

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcC
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL  452 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l  452 (596)
                      ++|++|++++|.++...+..|.++++|++|++++|+++...+++|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999977778999999999999999999988889999999999999999975

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.80  E-value=5.9e-10  Score=114.91  Aligned_cols=128  Identities=24%  Similarity=0.319  Sum_probs=78.0

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +..++.+.+..|.+.. +-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+.+.  .+..++.|+.|+
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~L~  146 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKELN  146 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheecccccccccc--chhhccchhhhe
Confidence            3455566666666653 22335566677777777777763 3323556677777777777777543  345556677777


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCc
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+. .+...-  .+..|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       147 l~~N~i~-~~~~~~--~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLIS-DISGLE--SLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcch-hccCCc--cchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            7777775 333322  26677777777777664333 1 355667777777777665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.78  E-value=5.4e-09  Score=115.16  Aligned_cols=132  Identities=26%  Similarity=0.325  Sum_probs=103.9

Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCc--CccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCC
Q 044353           18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNK--LNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ   95 (596)
Q Consensus        18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~   95 (596)
                      ......++..+.+|.+.. ++.+ ..++.|++|-+..|.  +. .++...|..++.|++|||++|.--+..|..++.+-+
T Consensus       520 ~~~~~~rr~s~~~~~~~~-~~~~-~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  520 KSWNSVRRMSLMNNKIEH-IAGS-SENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             cchhheeEEEEeccchhh-ccCC-CCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            344677888888888863 3433 345689999999996  54 777667899999999999998766778888999999


Q ss_pred             ccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc
Q 044353           96 LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ  154 (596)
Q Consensus        96 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~  154 (596)
                      |++|++++..+. .+|..+++++.|.+|++..+.-...+ ..+...+++|++|.+....
T Consensus       597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESI-PGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hhcccccCCCcc-ccchHHHHHHhhheeccccccccccc-cchhhhcccccEEEeeccc
Confidence            999999999987 88999999999999999987654344 3444557899999886554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=4e-09  Score=116.16  Aligned_cols=108  Identities=19%  Similarity=0.142  Sum_probs=69.6

Q ss_pred             CCCCCEEECcCCc--ccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353           20 FKTLRALDLSNNT--VNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA   97 (596)
Q Consensus        20 l~~L~~L~ls~n~--i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   97 (596)
                      +++|++|-+..|.  +.....+.|..++.|++|||++|.=-+.+|. .++.+.+|++|+++++.+. ..|..+.++..|.
T Consensus       544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~-~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPS-SIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLI  621 (889)
T ss_pred             CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCCh-HHhhhhhhhcccccCCCcc-ccchHHHHHHhhh
Confidence            3367777777664  4433344466677777777776654346666 6777777777777777665 5566677777777


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEcccCc
Q 044353           98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTR  129 (596)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  129 (596)
                      +|++..+.....++.....+++|++|.+....
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccc
Confidence            77777665444445556667777777766543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.72  E-value=3.2e-09  Score=109.45  Aligned_cols=128  Identities=26%  Similarity=0.301  Sum_probs=60.1

Q ss_pred             CCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEE
Q 044353           20 FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFL   99 (596)
Q Consensus        20 l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   99 (596)
                      +..+..+++..|.+.. +-..+..+++|+.|++.+|+|. .+.. .+..+.+|++|++++|.|+..  ..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hccc-chhhhhcchheeccccccccc--cchhhccchhhh
Confidence            3444444455555542 1223445555555555555554 3332 244555555555555555432  223344445555


Q ss_pred             EccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccc
Q 044353          100 ELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI  155 (596)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  155 (596)
                      ++.+|.+..  ...+..++.|+.+++++|+++..-+.. ...+.+++.+.+.+|.+
T Consensus       146 ~l~~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  146 NLSGNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSI  198 (414)
T ss_pred             eeccCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCch
Confidence            555555532  122333555556666666554322211 12344555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.62  E-value=1.5e-09  Score=110.89  Aligned_cols=107  Identities=29%  Similarity=0.390  Sum_probs=77.8

Q ss_pred             cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcc-ccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353          391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  469 (596)
                      ++.|+.|+|++|+++...  .+..|+.|++|||+.|.+. .+|.. ..++ .|+.|.+++|.++..  ..+.++.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHHhhhhhhcc
Confidence            555888888999887432  6788899999999999887 45542 2233 488999999988743  357788888999


Q ss_pred             ecccccCccC--CCCCCccCccccccccCCCCCCCC
Q 044353          470 NLSNNNLNGE--IPSSTQLQSFGASSFAGNDLCGAP  503 (596)
Q Consensus       470 ~ls~N~l~~~--~~~~~~~~~l~~~~~~~n~lc~~~  503 (596)
                      |+++|-+.+-  ....+.+..+..+++.|||+|-.|
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            9999987643  223355667788889999976443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.4e-09  Score=111.06  Aligned_cols=180  Identities=28%  Similarity=0.332  Sum_probs=106.8

Q ss_pred             CccCcCCCCCcEEEccCCcccccCChhhcCC-CCCCEEEccCCccc----------ccCchhhhhhcccccEEEccCCcC
Q 044353          244 PMSIGALNSLMSLNLRNNRLSGIIPTSFRNL-SILKALDMGENELV----------GNIPTWIGETFSRLMILNLRSNKF  312 (596)
Q Consensus       244 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~n~l~----------~~~~~~~~~~l~~L~~L~L~~n~l  312 (596)
                      |-.+..+.+|+.|.+.++.+...  ..+..+ .+|++|- ..|.+.          |.+.....  -..|...+++.|.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LI-C~~Sl~Al~~v~ascggd~~ns~~--Wn~L~~a~fsyN~L  176 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLI-CHNSLDALRHVFASCGGDISNSPV--WNKLATASFSYNRL  176 (1096)
T ss_pred             CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhh-hhccHHHHHHHHHHhccccccchh--hhhHhhhhcchhhH
Confidence            55566778999999999888731  111111 1233332 122211          11111110  12466777777777


Q ss_pred             cCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccc
Q 044353          313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILN  392 (596)
Q Consensus       313 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  392 (596)
                      . ....++.-++.|+.|+|++|+++..  +.+                                            ..++
T Consensus       177 ~-~mD~SLqll~ale~LnLshNk~~~v--~~L--------------------------------------------r~l~  209 (1096)
T KOG1859|consen  177 V-LMDESLQLLPALESLNLSHNKFTKV--DNL--------------------------------------------RRLP  209 (1096)
T ss_pred             H-hHHHHHHHHHHhhhhccchhhhhhh--HHH--------------------------------------------Hhcc
Confidence            6 5666677777788888888877621  122                                            2255


Q ss_pred             cccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEe
Q 044353          393 LVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLN  470 (596)
Q Consensus       393 ~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~  470 (596)
                      +|++|||++|.+. .+|. ...++. |+.|+|++|.++ ..- .+.++.+|+.||+++|-|.+.. -..++.+..|+.|.
T Consensus       210 ~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~-tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  210 KLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALT-TLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             cccccccccchhc-cccccchhhhh-heeeeecccHHH-hhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHh
Confidence            6777777777776 3333 333444 888888888776 222 3677788888888888776432 13345566778888


Q ss_pred             cccccCccC
Q 044353          471 LSNNNLNGE  479 (596)
Q Consensus       471 ls~N~l~~~  479 (596)
                      |.||++.|.
T Consensus       286 LeGNPl~c~  294 (1096)
T KOG1859|consen  286 LEGNPLCCA  294 (1096)
T ss_pred             hcCCccccC
Confidence            888887763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.46  E-value=3.3e-09  Score=97.37  Aligned_cols=179  Identities=17%  Similarity=0.118  Sum_probs=99.0

Q ss_pred             CCcEEEccCCeeeeEeC-CCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEE
Q 044353           71 QLLVFRAHGNSLVFKIN-PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYL  148 (596)
Q Consensus        71 ~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L  148 (596)
                      .|+++||++..++.... ..+..|.+|+.|++.++++..-+...+++-.+|+.|+++.+ .++......++..++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            46666666655542221 23455666777777777776666666777777777777764 45544444556666777777


Q ss_pred             EcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC---CCCCcccCC
Q 044353          149 NVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS---EDIPDCWMN  225 (596)
Q Consensus       149 ~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~  225 (596)
                      +++.|.+..........                            .      --++|+.|+++++.-.   ..+..-...
T Consensus       266 NlsWc~l~~~~Vtv~V~----------------------------h------ise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVA----------------------------H------ISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             CchHhhccchhhhHHHh----------------------------h------hchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            77766553221110000                            0      0245666666654311   001111245


Q ss_pred             CCCCcEEEccccc-ccccCCccCcCCCCCcEEEccCCcccccCChh---hcCCCCCCEEEccCC
Q 044353          226 WPRLRMLNLGNNN-FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTS---FRNLSILKALDMGEN  285 (596)
Q Consensus       226 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~---~~~l~~L~~L~L~~n  285 (596)
                      +++|..||+++|. ++......|..++.|++|.++.|..  +.|..   +...|.|.+|+.-++
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             CCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            6777777777664 3333333455667777777776643  34443   345677888877664

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=1.7e-07  Score=86.39  Aligned_cols=86  Identities=23%  Similarity=0.276  Sum_probs=58.7

Q ss_pred             CCCCCCEEECcCCccccc--CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC-CCCCCCC
Q 044353           19 RFKTLRALDLSNNTVNGP--IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP-NWVPPFQ   95 (596)
Q Consensus        19 ~l~~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~   95 (596)
                      .++.+++|||.+|.|++-  +..-+.++|+|+.|+|+.|++...|.. .-..+.+|++|.|.+..+...... ....++.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~-lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKS-LPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCcccc-CcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            577888899999988842  222356788999999999988744442 114667888888888877543333 3345667


Q ss_pred             ccEEEccCCC
Q 044353           96 LAFLELRSCH  105 (596)
Q Consensus        96 L~~L~L~~n~  105 (596)
                      ++.|.++.|.
T Consensus       148 vtelHmS~N~  157 (418)
T KOG2982|consen  148 VTELHMSDNS  157 (418)
T ss_pred             hhhhhhccch
Confidence            7777777663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=3.1e-08  Score=91.15  Aligned_cols=178  Identities=19%  Similarity=0.131  Sum_probs=98.0

Q ss_pred             CCCEEECcCCccccc-CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CCCCCCCccE
Q 044353           22 TLRALDLSNNTVNGP-IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NWVPPFQLAF   98 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~   98 (596)
                      .|++||||+..|+.. ....+..|.+|+.|.|.++++.+.+-. .+.+-.+|+.|+++.+. ++..... .+.+++.|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~-~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVN-TIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHH-HHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            466777777666532 223345677777777777777655544 66667777777777653 2211111 3456677777


Q ss_pred             EEccCCCCCCCcchh-hcC-CCCCcEEEcccCc--CcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353           99 LELRSCHLGPRFPLW-LQS-QKKLYYLDISSTR--ISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS  174 (596)
Q Consensus        99 L~L~~n~l~~~~~~~-l~~-l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  174 (596)
                      |+++.|.+....... +.+ -++|..|+++++.  +...-...+...+++|.+||+++|..-                  
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l------------------  326 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML------------------  326 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc------------------
Confidence            777777654322211 111 1566677777653  221222233445677777777766421                  


Q ss_pred             CCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcc---cCCCCCCcEEEcccc
Q 044353          175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDC---WMNWPRLRMLNLGNN  237 (596)
Q Consensus       175 ~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---~~~l~~L~~L~l~~n  237 (596)
                                   +    ......+-+++.|++|.++.|-.  ++|..   +...|.|.+|++.++
T Consensus       327 -------------~----~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  327 -------------K----NDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             -------------C----chHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence                         0    11112233356777777777763  33432   456677777777665

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=9.3e-08  Score=86.89  Aligned_cols=41  Identities=20%  Similarity=0.301  Sum_probs=20.4

Q ss_pred             CCCCCCccEEEccCCCCCCCcchh----hcCCCCCcEEEcccCcC
Q 044353           90 WVPPFQLAFLELRSCHLGPRFPLW----LQSQKKLYYLDISSTRI  130 (596)
Q Consensus        90 ~~~l~~L~~L~L~~n~l~~~~~~~----l~~l~~L~~L~l~~n~i  130 (596)
                      +.+|++|+..+|++|.+....|..    +++-+.|++|.+++|.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            344555555555555554444332    23445555555555554

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.16  E-value=3.2e-07  Score=84.63  Aligned_cols=86  Identities=19%  Similarity=0.125  Sum_probs=38.3

Q ss_pred             CCCCcEEEccCCeee--eEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCc
Q 044353           69 LTQLLVFRAHGNSLV--FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYD  146 (596)
Q Consensus        69 l~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~  146 (596)
                      +..++.+||..|.++  ..+......+|.|++|+++.|++...+...=...++|++|-|.+..+.......+...++.++
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            344555555555443  111112334445555555555443221111023345555555555555444444444455555


Q ss_pred             EEEccccc
Q 044353          147 YLNVSGNQ  154 (596)
Q Consensus       147 ~L~l~~n~  154 (596)
                      +|+++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            55555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=2.3e-07  Score=84.37  Aligned_cols=139  Identities=17%  Similarity=0.182  Sum_probs=85.1

Q ss_pred             cccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCc---cccC------hhhhhcCCCCcEEEccCCee
Q 044353           16 QLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLN---GTVS------EIHFLNLTQLLVFRAHGNSL   82 (596)
Q Consensus        16 ~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~---~~~~------~~~~~~l~~L~~L~L~~n~l   82 (596)
                      .+..+..+..++||+|.|...    +...+.+-.+|+..+++.--..   +.++      ..++.+|++|+..+||.|.+
T Consensus        25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAf  104 (388)
T COG5238          25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAF  104 (388)
T ss_pred             HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccccc
Confidence            345578889999999988753    2334556678888888764211   1111      11677899999999999988


Q ss_pred             eeEeCCC----CCCCCCccEEEccCCCCCCCcchhh-------------cCCCCCcEEEcccCcCcccCChhHHhc----
Q 044353           83 VFKINPN----WVPPFQLAFLELRSCHLGPRFPLWL-------------QSQKKLYYLDISSTRISAKIPRGFWNS----  141 (596)
Q Consensus        83 ~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~l-------------~~l~~L~~L~l~~n~i~~~~~~~~~~~----  141 (596)
                      ....+..    +++.+.|.+|.+.+|.+......-+             ++-|.|++.....|++. ..+...+..    
T Consensus       105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-ngs~~~~a~~l~s  183 (388)
T COG5238         105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-NGSKELSAALLES  183 (388)
T ss_pred             CcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-cCcHHHHHHHHHh
Confidence            7665553    4556789999999998753222111             23456666666666654 333332221    


Q ss_pred             CCCCcEEEcccccc
Q 044353          142 IFQYDYLNVSGNQI  155 (596)
Q Consensus       142 l~~L~~L~l~~n~l  155 (596)
                      -..|+.+.+..|.|
T Consensus       184 h~~lk~vki~qNgI  197 (388)
T COG5238         184 HENLKEVKIQQNGI  197 (388)
T ss_pred             hcCceeEEeeecCc
Confidence            13455555555544

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.05  E-value=2.4e-07  Score=75.51  Aligned_cols=58  Identities=26%  Similarity=0.463  Sum_probs=26.5

Q ss_pred             ccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                      ++.|++++|+++ .+|+.+..++.|+.|+++.|.+. ..|..+..+.++-.|+..+|.+-
T Consensus        79 ~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   79 ATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             hhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            444444444444 34444444444444444444444 33444444444444444444444

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.97  E-value=7.2e-07  Score=72.76  Aligned_cols=59  Identities=25%  Similarity=0.482  Sum_probs=24.7

Q ss_pred             CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      |...+|++|.+. .+|..+...++.++.+++.+|.+. .+|..+..++.|+.|+++.|++.
T Consensus        55 l~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~  113 (177)
T KOG4579|consen   55 LTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN  113 (177)
T ss_pred             EEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc
Confidence            333344444443 333333333334444444444444 33444444444444444444443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.93  E-value=7.3e-06  Score=54.02  Aligned_cols=35  Identities=34%  Similarity=0.628  Sum_probs=14.7

Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                      |++|++++|+|+ .+|..++.+++|+.|++++|+++
T Consensus         3 L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    3 LEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             -SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             ceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            444444444444 23333444444444444444444

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1e-05  Score=53.32  Aligned_cols=37  Identities=49%  Similarity=0.751  Sum_probs=24.5

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCc
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN   58 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~   58 (596)
                      ++|++|++++|+|++ +|..+.++++|++|++++|+|+
T Consensus         1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence            467777777777774 4545777777777777777776

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=3.4e-05  Score=67.64  Aligned_cols=83  Identities=19%  Similarity=0.119  Sum_probs=37.9

Q ss_pred             CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCc-chhhcCCCCCcEEE
Q 044353           46 NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRF-PLWLQSQKKLYYLD  124 (596)
Q Consensus        46 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  124 (596)
                      +...+||++|.+. .++  .|..++.|.+|.+++|.|+.+.+..-.-+++|+.|.|.+|++.... -..+..|++|+.|.
T Consensus        43 ~~d~iDLtdNdl~-~l~--~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-KLD--NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-hcc--cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3444555555543 333  3444555555555555554444333333444555555555443211 12244455555555


Q ss_pred             cccCcCc
Q 044353          125 ISSTRIS  131 (596)
Q Consensus       125 l~~n~i~  131 (596)
                      +-+|.++
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.84  E-value=6.9e-05  Score=63.49  Aligned_cols=124  Identities=16%  Similarity=0.174  Sum_probs=71.8

Q ss_pred             CccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCC
Q 044353           14 TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPP   93 (596)
Q Consensus        14 ~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   93 (596)
                      ..+|..+++|+.+.+.. .+..+...+|..+++|+.+.+..+ +. .++..+|.+++.++.+.+.. .+.......|..+
T Consensus         5 ~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~   80 (129)
T PF13306_consen    5 NNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC   80 (129)
T ss_dssp             TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred             HHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccc
Confidence            45778888999999875 566677788889989999999876 55 77777899998899999975 5555566788888


Q ss_pred             CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC
Q 044353           94 FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY  145 (596)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L  145 (596)
                      ++|+.+.+..+ +.......|.++ .|+.+.+.. .+. .++...+..+++|
T Consensus        81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~-~i~~~~F~~~~~l  128 (129)
T PF13306_consen   81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NIT-KIEENAFKNCTKL  128 (129)
T ss_dssp             TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-S-S----GGG-----
T ss_pred             ccccccccCcc-ccEEchhhhcCC-CceEEEECC-Ccc-EECCccccccccC
Confidence            89999998765 555556667777 888888775 333 3555555555555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.70  E-value=4.3e-05  Score=66.97  Aligned_cols=125  Identities=19%  Similarity=0.084  Sum_probs=90.5

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      ++|.+.++..... -=........+||++|.+...  .-|..+++|..|.|++|+|+ .+....-..+++|++|.|.+|.
T Consensus        24 ~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNs   99 (233)
T KOG1644|consen   24 LDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNS   99 (233)
T ss_pred             cccccccccchhh-ccccccccceecccccchhhc--ccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcc
Confidence            4555555542111 112355678899999998753  46788999999999999998 6665455667889999999998


Q ss_pred             eeeEe-CCCCCCCCCccEEEccCCCCCC---CcchhhcCCCCCcEEEcccCcC
Q 044353           82 LVFKI-NPNWVPPFQLAFLELRSCHLGP---RFPLWLQSQKKLYYLDISSTRI  130 (596)
Q Consensus        82 l~~~~-~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L~l~~n~i  130 (596)
                      +.... ...+..+++|++|.+-+|.+..   .-...+..+++|+.||+.+-.-
T Consensus       100 i~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  100 IQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             hhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            86222 2456788999999999998753   2233467889999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.66  E-value=9.8e-06  Score=87.50  Aligned_cols=144  Identities=19%  Similarity=0.185  Sum_probs=76.5

Q ss_pred             eeecCCC-ccccCCcccc-CCCCCCEEECcCCccccc-CCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEcc
Q 044353            2 LFLRRSQ-FYGHLTNQLG-RFKTLRALDLSNNTVNGP-IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH   78 (596)
Q Consensus         2 l~L~~n~-l~~~~~~~l~-~l~~L~~L~ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~   78 (596)
                      ||+++.+ +...+|..++ .+|.|++|.+++-.+... +-.-..++++|++||+|+++++ .+  ..++.+++|++|.+.
T Consensus       127 LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mr  203 (699)
T KOG3665|consen  127 LDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMR  203 (699)
T ss_pred             cCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc--HHHhccccHHHHhcc
Confidence            4555544 2333444443 577777777776555422 1223456677777777777765 44  256677777777666


Q ss_pred             CCeeee-EeCCCCCCCCCccEEEccCCCCCCCc--ch----hhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEE
Q 044353           79 GNSLVF-KINPNWVPPFQLAFLELRSCHLGPRF--PL----WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYL  148 (596)
Q Consensus        79 ~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--~~----~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L  148 (596)
                      +=.+.. ..-..+..+++|++||++........  ..    .-..+|+|+.||.|++.+.......+...-++|+.+
T Consensus       204 nLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i  280 (699)
T KOG3665|consen  204 NLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQI  280 (699)
T ss_pred             CCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhh
Confidence            544321 11123455667777777665432211  11    112356667777766666554444444433444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.63  E-value=0.00016  Score=61.31  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=36.3

Q ss_pred             ccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccc
Q 044353          222 CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR  301 (596)
Q Consensus       222 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~  301 (596)
                      +|.++++|+.+.+.. .+......+|.++++|+.+.+.++ +..+...+|.++++++.+.+.+ .+. .++...+..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~-~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK-SIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT--EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc-cccccccccccc
Confidence            344444444444442 233333444444444444444443 3333444444444444444433 221 333333333444


Q ss_pred             ccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353          302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAY  333 (596)
Q Consensus       302 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  333 (596)
                      ++.+.+..+ +.......|.+. +|+.+.+..
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            555544433 222223334443 455555443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.63  E-value=0.00014  Score=72.38  Aligned_cols=76  Identities=14%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             CcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCC
Q 044353          247 IGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGS  325 (596)
Q Consensus       247 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~  325 (596)
                      +..+.+++.|++++|.++. .|.   -.++|++|.++++.-...+|..+   .++|++|++++| .+. .+|      ++
T Consensus        48 ~~~~~~l~~L~Is~c~L~s-LP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIES-LPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLP------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcc-cCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-ccc------cc
Confidence            3345788888888887773 341   23468888888754333666544   257888888887 443 344      35


Q ss_pred             CcEEeCCCCcC
Q 044353          326 LQILDVAYNSL  336 (596)
Q Consensus       326 L~~L~l~~n~l  336 (596)
                      |+.|++..+..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            67777766543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00022  Score=71.08  Aligned_cols=54  Identities=20%  Similarity=0.200  Sum_probs=26.9

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                      +.+++.|++++|.++. +|. +  .++|++|.+++|.--..+|+.+  .++|+.|++++|
T Consensus        51 ~~~l~~L~Is~c~L~s-LP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C  104 (426)
T PRK15386         51 ARASGRLYIKDCDIES-LPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC  104 (426)
T ss_pred             hcCCCEEEeCCCCCcc-cCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence            4566666666665543 231 1  1246666666543222444333  135566666655

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.42  E-value=3.8e-05  Score=83.05  Aligned_cols=88  Identities=18%  Similarity=0.178  Sum_probs=44.9

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc-cCCccCcCCCCCcEEEccCCcccccC------ChhhcCC
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG-SLPMSIGALNSLMSLNLRNNRLSGII------PTSFRNL  274 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l  274 (596)
                      +++|..||+|+.+++..  .+++.+++|+.|.+.+=.+.. ..-..+..+++|+.||+|........      -+.-..+
T Consensus       172 FpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~L  249 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVL  249 (699)
T ss_pred             cCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccC
Confidence            56666666666666533  345566666666665544331 11123445666666666655433211      0111235


Q ss_pred             CCCCEEEccCCcccccC
Q 044353          275 SILKALDMGENELVGNI  291 (596)
Q Consensus       275 ~~L~~L~L~~n~l~~~~  291 (596)
                      |+|+.||.+++.+.+.+
T Consensus       250 peLrfLDcSgTdi~~~~  266 (699)
T KOG3665|consen  250 PELRFLDCSGTDINEEI  266 (699)
T ss_pred             ccccEEecCCcchhHHH
Confidence            66666666665554333

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.21  E-value=1.4e-05  Score=77.51  Aligned_cols=279  Identities=15%  Similarity=0.058  Sum_probs=124.0

Q ss_pred             CCCEEECcCCccccc--CCccCcCCCCCCEEECcCCc-CccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CCCCCCCc
Q 044353           22 TLRALDLSNNTVNGP--IPLSLGQIANLEYLDLSNNK-LNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NWVPPFQL   96 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~--~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L   96 (596)
                      .|+.|.+.+++=.+.  .-..-.+++++++|++.++. +++..-...-..+++|++|++..|. ++..... ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            566666666643221  11223467777777777764 3322112123456777777777642 2222111 22356777


Q ss_pred             cEEEccCCC-CCCCc-chhhcCCCCCcEEEcccCc-CcccCChhHHhcCCCCcEEEcccccc-cccCCCCCCCCCCcccc
Q 044353           97 AFLELRSCH-LGPRF-PLWLQSQKKLYYLDISSTR-ISAKIPRGFWNSIFQYDYLNVSGNQI-YGGVPKFDSPSVPLITT  172 (596)
Q Consensus        97 ~~L~L~~n~-l~~~~-~~~l~~l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~l-~~~~~~~~~~~~~~~~~  172 (596)
                      ++|+++.|. +++.. ......++.++.+.+.++. ........+...+..+.++++.++.. ++..             
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~-------------  285 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDED-------------  285 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchH-------------
Confidence            777777765 43322 2234455666666555542 11111111112223344444434421 1100             


Q ss_pred             CCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC-CCCccc-CCCCCCcEEEccccc-ccccCCccC-c
Q 044353          173 PSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-DIPDCW-MNWPRLRMLNLGNNN-FTGSLPMSI-G  248 (596)
Q Consensus       173 ~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~-~  248 (596)
                                            ++..-..+..|+.|+.+++.-.+ ..-.++ .+..+|+.+.+++++ ++..-...+ .
T Consensus       286 ----------------------~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~r  343 (483)
T KOG4341|consen  286 ----------------------LWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGR  343 (483)
T ss_pred             ----------------------HHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhc
Confidence                                  00000113455555555543211 111111 234556666666554 221111112 2


Q ss_pred             CCCCCcEEEccCCccccc--CChhhcCCCCCCEEEccCCccc-ccCc---hhhhhhcccccEEEccCCcCc-CcCCcccC
Q 044353          249 ALNSLMSLNLRNNRLSGI--IPTSFRNLSILKALDMGENELV-GNIP---TWIGETFSRLMILNLRSNKFH-GDFPIQLC  321 (596)
Q Consensus       249 ~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~-~~~~---~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~  321 (596)
                      +.+.|+.+++..+.....  ....-.+++.|+.+.++.+... +..-   .........|..+.++++..+ ...-+.+.
T Consensus       344 n~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~  423 (483)
T KOG4341|consen  344 NCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS  423 (483)
T ss_pred             CChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh
Confidence            345566666665543311  1222235566666666655432 1100   011113455666666666443 22333455


Q ss_pred             CCCCCcEEeCCCCc
Q 044353          322 RLGSLQILDVAYNS  335 (596)
Q Consensus       322 ~l~~L~~L~l~~n~  335 (596)
                      .+++|+.+++-.+.
T Consensus       424 ~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  424 ICRNLERIELIDCQ  437 (483)
T ss_pred             hCcccceeeeechh
Confidence            56677777666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.20  E-value=0.00017  Score=66.11  Aligned_cols=106  Identities=18%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             CCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC--eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCC
Q 044353           44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN--SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKL  120 (596)
Q Consensus        44 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L  120 (596)
                      +..|+.|++.+..++ ++.  .|-.+++|+.|.++.|  .+.+........+++|++|++++|++.. .....+..+++|
T Consensus        42 ~~~le~ls~~n~glt-t~~--~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLT-TLT--NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhcccee-ecc--cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence            334444444444433 222  3444555555555555  3333333333344566666666665542 112234566677


Q ss_pred             cEEEcccCcCcccCC--hhHHhcCCCCcEEEccc
Q 044353          121 YYLDISSTRISAKIP--RGFWNSIFQYDYLNVSG  152 (596)
Q Consensus       121 ~~L~l~~n~i~~~~~--~~~~~~l~~L~~L~l~~  152 (596)
                      ..|++.+|..+....  ..++..+++|++|+-..
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            777777776553111  23455567777775443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.09  E-value=0.00036  Score=64.05  Aligned_cols=111  Identities=21%  Similarity=0.192  Sum_probs=69.8

Q ss_pred             CCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCC--cCccccChhhhhcCCCCcEEEccCCeeee-EeCCC
Q 044353           13 LTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNN--KLNGTVSEIHFLNLTQLLVFRAHGNSLVF-KINPN   89 (596)
Q Consensus        13 ~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n--~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~   89 (596)
                      +......+..|+.|++.+..++..  ..|..+++|++|.+|.|  ++++.++. ...++++|++|++++|++.. .....
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~p  111 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRP  111 (260)
T ss_pred             cccccccccchhhhhhhccceeec--ccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccch
Confidence            455556677777777777777643  34667788888888888  55544443 44556888888888888763 11223


Q ss_pred             CCCCCCccEEEccCCCCCCCc---chhhcCCCCCcEEEcc
Q 044353           90 WVPPFQLAFLELRSCHLGPRF---PLWLQSQKKLYYLDIS  126 (596)
Q Consensus        90 ~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~l~  126 (596)
                      ...+.+|..|++.+|..+...   -..|.-+++|++||-.
T Consensus       112 l~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  112 LKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            444556777788877655321   1234456777766543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.04  E-value=3.6e-05  Score=74.79  Aligned_cols=281  Identities=14%  Similarity=0.027  Sum_probs=157.4

Q ss_pred             cccCCCCCCEEECcCCc-ccccCCccC-cCCCCCCEEECcCC-cCccccChhhhhcCCCCcEEEccCCe-eeeEeCC-CC
Q 044353           16 QLGRFKTLRALDLSNNT-VNGPIPLSL-GQIANLEYLDLSNN-KLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINP-NW   90 (596)
Q Consensus        16 ~l~~l~~L~~L~ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~   90 (596)
                      ...+++++++|++.++. +++..-.++ ..|+.|++|+|..+ .++...-...-.++++|++++++.+. +++.... -.
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            34689999999998885 332211122 35899999999985 45544333345679999999999875 3332212 23


Q ss_pred             CCCCCccEEEccCCCCCCCcchhh----cCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccccccccCCCCCCC
Q 044353           91 VPPFQLAFLELRSCHLGPRFPLWL----QSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP  165 (596)
Q Consensus        91 ~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  165 (596)
                      .++..++.+.+.+|.-.  ..+.+    +.+..+..+++..+ .+++.....+...+..|+.++.+++.-.+..      
T Consensus       239 rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~------  310 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE------  310 (483)
T ss_pred             ccchhhhhhhhcccccc--cHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH------
Confidence            45566777777766421  11122    24455666665554 4555444444555677888888776421100      


Q ss_pred             CCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcC-CCCCCccc-CCCCCCcEEEcccccccc--
Q 044353          166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHF-SEDIPDCW-MNWPRLRMLNLGNNNFTG--  241 (596)
Q Consensus       166 ~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~-~~l~~L~~L~l~~n~l~~--  241 (596)
                                                  .+...-....+|+.|-++.+.- +......+ .+++.|+.+++..+....  
T Consensus       311 ----------------------------~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~  362 (483)
T KOG4341|consen  311 ----------------------------VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDG  362 (483)
T ss_pred             ----------------------------HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhh
Confidence                                        0011112256777777777652 22111112 356678888888776431  


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccC-----ChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCc-Cc
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGII-----PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFH-GD  315 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~-~~  315 (596)
                      .+...-.+++.|+.+.++++......     ...-..+..|+.+.+++++....-.-.....+++|+.+++.++.-. .+
T Consensus       363 tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~  442 (483)
T KOG4341|consen  363 TLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKE  442 (483)
T ss_pred             hHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhh
Confidence            12222235778888888877644221     1222456778888888887532111122225778888888777432 11


Q ss_pred             -CCcccCCCCCCcEEeCC
Q 044353          316 -FPIQLCRLGSLQILDVA  332 (596)
Q Consensus       316 -~~~~~~~l~~L~~L~l~  332 (596)
                       +...-.++|+++..-+.
T Consensus       443 ~i~~~~~~lp~i~v~a~~  460 (483)
T KOG4341|consen  443 AISRFATHLPNIKVHAYF  460 (483)
T ss_pred             hhHHHHhhCccceehhhc
Confidence             22223456666655443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.46  E-value=0.00012  Score=67.35  Aligned_cols=101  Identities=22%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKAL  280 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  280 (596)
                      +.++++|+.-++++.++.  ....++.|+.|.|+-|.|+...|  +..|++|++|+|..|.|..... ..+.++|+|+.|
T Consensus        18 l~~vkKLNcwg~~L~DIs--ic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS--ICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHHH--HHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence            357788999999887532  34678899999999999985544  7889999999999999985421 346789999999


Q ss_pred             EccCCcccccCchhh----hhhcccccEEE
Q 044353          281 DMGENELVGNIPTWI----GETFSRLMILN  306 (596)
Q Consensus       281 ~L~~n~l~~~~~~~~----~~~l~~L~~L~  306 (596)
                      .|..|.-.|.-+...    ...+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            999998776655432    23577888776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.08  E-value=0.0013  Score=69.67  Aligned_cols=111  Identities=19%  Similarity=0.040  Sum_probs=60.2

Q ss_pred             CCCCCEEECcCCcCccccC-hhhhhcCCCCcEEEccCC-eeeeEe----CCCCCCCCCccEEEccCCC-CCCCcchhhcC
Q 044353           44 IANLEYLDLSNNKLNGTVS-EIHFLNLTQLLVFRAHGN-SLVFKI----NPNWVPPFQLAFLELRSCH-LGPRFPLWLQS  116 (596)
Q Consensus        44 l~~L~~L~Ls~n~i~~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~  116 (596)
                      ++.|+.|.+..+.-..... ......+++|+.|+++++ ......    ......+.+|+.|+++.+. ++...-..++.
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            5667777776663221211 124556677777777652 111011    1122344667777777666 44444444433


Q ss_pred             -CCCCcEEEcccCc-CcccCChhHHhcCCCCcEEEccccc
Q 044353          117 -QKKLYYLDISSTR-ISAKIPRGFWNSIFQYDYLNVSGNQ  154 (596)
Q Consensus       117 -l~~L~~L~l~~n~-i~~~~~~~~~~~l~~L~~L~l~~n~  154 (596)
                       +++|+.|.+.++. +++..-..+...+++|++|+++.+.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence             6677777766665 5555555555666677777777654

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.00057  Score=63.09  Aligned_cols=82  Identities=24%  Similarity=0.294  Sum_probs=37.3

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC--cccCCCCCCcEE
Q 044353          252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP--IQLCRLGSLQIL  329 (596)
Q Consensus       252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L  329 (596)
                      +.++|+..++.+.++  .....|+.|++|.|+-|+|+ ++....  .|.+|+.|+|+.|.|.. +.  ..+.++|+|+.|
T Consensus        20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIs-sL~pl~--rCtrLkElYLRkN~I~s-ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKIS-SLAPLQ--RCTRLKELYLRKNCIES-LDELEYLKNLPSLRTL   93 (388)
T ss_pred             HhhhhcccCCCccHH--HHHHhcccceeEEeeccccc-cchhHH--HHHHHHHHHHHhccccc-HHHHHHHhcCchhhhH
Confidence            344444555544433  22334555555555555554 332211  34555555555554442 11  123455555555


Q ss_pred             eCCCCcCccc
Q 044353          330 DVAYNSLSGT  339 (596)
Q Consensus       330 ~l~~n~l~~~  339 (596)
                      .|..|+..+.
T Consensus        94 WL~ENPCc~~  103 (388)
T KOG2123|consen   94 WLDENPCCGE  103 (388)
T ss_pred             hhccCCcccc
Confidence            5555554433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=95.53  E-value=0.0018  Score=68.64  Aligned_cols=110  Identities=19%  Similarity=0.162  Sum_probs=47.7

Q ss_pred             CCCccEEeCcCCcCCCC--CCcccCCCCCCcEEEcccc-cccccC----CccCcCCCCCcEEEccCCc-ccccCChhhc-
Q 044353          202 SKNIEFLKLSKNHFSED--IPDCWMNWPRLRMLNLGNN-NFTGSL----PMSIGALNSLMSLNLRNNR-LSGIIPTSFR-  272 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-  272 (596)
                      ++.++.+.+..+.-...  .......++.|+.|+++++ ......    ......+++|+.|+++.+. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555422211  1122344556666666552 111011    1122234555555555555 3333222222 


Q ss_pred             CCCCCCEEEccCCc-ccccCchhhhhhcccccEEEccCCc
Q 044353          273 NLSILKALDMGENE-LVGNIPTWIGETFSRLMILNLRSNK  311 (596)
Q Consensus       273 ~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~  311 (596)
                      .+++|+.|.+.++. +++..-..+...++.|++|+++.|.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25555555555444 3333333344445555555555543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.81  E-value=0.014  Score=31.86  Aligned_cols=16  Identities=56%  Similarity=0.937  Sum_probs=7.3

Q ss_pred             CCEEECcCCcCccccCh
Q 044353           47 LEYLDLSNNKLNGTVSE   63 (596)
Q Consensus        47 L~~L~Ls~n~i~~~~~~   63 (596)
                      |++|||++|+++ .+|.
T Consensus         2 L~~Ldls~n~l~-~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPS   17 (22)
T ss_dssp             ESEEEETSSEES-EEGT
T ss_pred             ccEEECCCCcCE-eCCh
Confidence            444444444444 4443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.79  E-value=0.013  Score=31.98  Aligned_cols=12  Identities=50%  Similarity=0.775  Sum_probs=5.6

Q ss_pred             CCEEECCCCcCc
Q 044353          442 IESLDFSANQLS  453 (596)
Q Consensus       442 L~~L~Ls~N~l~  453 (596)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            444444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.49  E-value=0.00031  Score=72.78  Aligned_cols=190  Identities=21%  Similarity=0.216  Sum_probs=88.8

Q ss_pred             ccEEEccCCCCCCCcc----hhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccc
Q 044353           96 LAFLELRSCHLGPRFP----LWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLIT  171 (596)
Q Consensus        96 L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  171 (596)
                      +..|.|.+|.+.....    ..+.....|+.|++++|.+.+.....+...++..      .+.+                
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~------~~~l----------------  146 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLP------QCLL----------------  146 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccc------hHHH----------------
Confidence            6667777777654333    3345567777777777777644434343332111      0000                


Q ss_pred             cCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCC----CCcc----cCCCCCCcEEEcccccccc--
Q 044353          172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDC----WMNWPRLRMLNLGNNNFTG--  241 (596)
Q Consensus       172 ~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~----~~~l~~L~~L~l~~n~l~~--  241 (596)
                            .++++..+.+++.....+...+.....++.++++.|.+...    .+..    +....++++|.+++|.++.  
T Consensus       147 ------~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~  220 (478)
T KOG4308|consen  147 ------QTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSS  220 (478)
T ss_pred             ------HHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHH
Confidence                  22333334444444444445555566777888887776311    1111    2234456666666665541  


Q ss_pred             --cCCccCcCCCC-CcEEEccCCccccc----CChhhcCC-CCCCEEEccCCcccccCchhhhh---hcccccEEEccCC
Q 044353          242 --SLPMSIGALNS-LMSLNLRNNRLSGI----IPTSFRNL-SILKALDMGENELVGNIPTWIGE---TFSRLMILNLRSN  310 (596)
Q Consensus       242 --~~~~~~~~l~~-L~~L~L~~n~l~~~----~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~---~l~~L~~L~L~~n  310 (596)
                        .....+...++ +..|++..|.+.+.    ....+..+ +.++++++..|.+++....+..+   .++.++++.+++|
T Consensus       221 c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n  300 (478)
T KOG4308|consen  221 CALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN  300 (478)
T ss_pred             HHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC
Confidence              11112222333 44455555555432    11222223 34455555555554333222221   2334444445444


Q ss_pred             cCc
Q 044353          311 KFH  313 (596)
Q Consensus       311 ~l~  313 (596)
                      .+.
T Consensus       301 ~l~  303 (478)
T KOG4308|consen  301 PLT  303 (478)
T ss_pred             ccc
Confidence            443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.49  E-value=0.00052  Score=71.10  Aligned_cols=40  Identities=23%  Similarity=0.307  Sum_probs=29.1

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE  217 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~  217 (596)
                      ..++++.|.++......+...+..++.++.+.++.|.+..
T Consensus       265 ~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  265 RVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            4566677777766666666666667888899998887763

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.22  E-value=0.094  Score=26.42  Aligned_cols=12  Identities=75%  Similarity=0.985  Sum_probs=4.1

Q ss_pred             CCCEEECcCCcC
Q 044353           46 NLEYLDLSNNKL   57 (596)
Q Consensus        46 ~L~~L~Ls~n~i   57 (596)
                      +|+.|+|++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            344444444444

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.08  E-value=0.0063  Score=54.87  Aligned_cols=84  Identities=20%  Similarity=0.217  Sum_probs=73.0

Q ss_pred             cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEe
Q 044353          391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN  470 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  470 (596)
                      ....+.||++.|++. .....|+-++.|..|+++.|++. ..|..++.+..+..+++..|..+ ..|.++...+.+++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e  117 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE  117 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence            556789999999887 55566788889999999999998 88888999999999999999998 7788899999999999


Q ss_pred             cccccCc
Q 044353          471 LSNNNLN  477 (596)
Q Consensus       471 ls~N~l~  477 (596)
                      +-+|++.
T Consensus       118 ~k~~~~~  124 (326)
T KOG0473|consen  118 QKKTEFF  124 (326)
T ss_pred             hccCcch
Confidence            9999864

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=91.75  E-value=0.16  Score=28.81  Aligned_cols=22  Identities=45%  Similarity=0.576  Sum_probs=13.3

Q ss_pred             CCCCEEECcCCcCccccChhhhh
Q 044353           45 ANLEYLDLSNNKLNGTVSEIHFL   67 (596)
Q Consensus        45 ~~L~~L~Ls~n~i~~~~~~~~~~   67 (596)
                      ++|++|+|++|+|+ .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            45666666666665 55554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=91.75  E-value=0.16  Score=28.81  Aligned_cols=22  Identities=45%  Similarity=0.576  Sum_probs=13.3

Q ss_pred             CCCCEEECcCCcCccccChhhhh
Q 044353           45 ANLEYLDLSNNKLNGTVSEIHFL   67 (596)
Q Consensus        45 ~~L~~L~Ls~n~i~~~~~~~~~~   67 (596)
                      ++|++|+|++|+|+ .+|...|.
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHcc
Confidence            45666666666665 55554443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.85  E-value=0.2  Score=28.48  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=11.0

Q ss_pred             CCCCEEECCCCcCcccCCccc
Q 044353          440 RSIESLDFSANQLSGQIPQSM  460 (596)
Q Consensus       440 ~~L~~L~Ls~N~l~~~~~~~~  460 (596)
                      ++|+.|+|++|+|+.+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666654433333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.85  E-value=0.2  Score=28.48  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=11.0

Q ss_pred             CCCCEEECCCCcCcccCCccc
Q 044353          440 RSIESLDFSANQLSGQIPQSM  460 (596)
Q Consensus       440 ~~L~~L~Ls~N~l~~~~~~~~  460 (596)
                      ++|+.|+|++|+|+.+.+..|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            455666666666654433333

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.79  E-value=0.083  Score=46.96  Aligned_cols=81  Identities=15%  Similarity=0.169  Sum_probs=36.6

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEccCCccccc-CchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEE
Q 044353          252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGN-IPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQIL  329 (596)
Q Consensus       252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L  329 (596)
                      .++.++-++..|..+.-+.+.+++.++.|.+.+++-.+. .-..+....++|+.|++++| +|+..--..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            345555555555555445555555555555555542211 11111112345555555555 3333222334444555555


Q ss_pred             eCC
Q 044353          330 DVA  332 (596)
Q Consensus       330 ~l~  332 (596)
                      .+.
T Consensus       182 ~l~  184 (221)
T KOG3864|consen  182 HLY  184 (221)
T ss_pred             Hhc
Confidence            444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.31  E-value=0.085  Score=46.88  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=58.6

Q ss_pred             cccEEEccCCcccccCCccccCcccCCeeeccCccC-cccCCcccc-CCCCCCEEECCCC-cCcccCCccccCCCCCCEE
Q 044353          393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLF-TGRIPDNIG-VMRSIESLDFSAN-QLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  469 (596)
                      .++.+|-++..+..+--+-+..++.++.|.+.+|.- .+.-.+.++ ..++|+.|+|++| +||.---..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            378888889888877777788888899999888852 111111121 3478999999977 5665444566777888888


Q ss_pred             ecccccC
Q 044353          470 NLSNNNL  476 (596)
Q Consensus       470 ~ls~N~l  476 (596)
                      .+.+=+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            7776443

>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]

Probab=86.29  E-value=0.62  Score=29.40  Aligned_cols=29  Identities=10%  Similarity=-0.042  Sum_probs=15.1

Q ss_pred             cceeeehhhhHHHHHHHHHHhhhhhhccc
Q 044353          532 DWLLYISMALGFVVGFWCFIGPLLIKRRW  560 (596)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  560 (596)
                      ...+.+++++.+++++++++++++++||+
T Consensus        10 ~vaIa~~VvVPV~vI~~vl~~~l~~~~rR   38 (40)
T PF08693_consen   10 TVAIAVGVVVPVGVIIIVLGAFLFFWYRR   38 (40)
T ss_pred             eEEEEEEEEechHHHHHHHHHHhheEEec
Confidence            33445556666665555555555544443

This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=83.34  E-value=0.65  Score=38.00  Aligned_cols=31  Identities=19%  Similarity=0.070  Sum_probs=18.6

Q ss_pred             ceeeehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353          533 WLLYISMALGFVVGFWCFIGPLLIKRRWRYK  563 (596)
Q Consensus       533 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (596)
                      ...++++++|++++++.++++++|+.||++|
T Consensus        63 ~~~i~~Ii~gv~aGvIg~Illi~y~irR~~K   93 (122)
T PF01102_consen   63 EPAIIGIIFGVMAGVIGIILLISYCIRRLRK   93 (122)
T ss_dssp             -TCHHHHHHHHHHHHHHHHHHHHHHHHHHS-
T ss_pred             ccceeehhHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3456777777777777766666665444333

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>TIGR00864 PCC polycystin cation channel protein

Probab=81.84  E-value=0.71  Score=56.81  Aligned_cols=39  Identities=26%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             ECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353          446 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST  484 (596)
Q Consensus       446 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~  484 (596)
                      ||++|+|+.+.+..|..+++|+.|+|++|+|.|.|.-.+
T Consensus         1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~CDC~L~W   39 (2740)
T TIGR00864         1 DISNNKISTIEEGICANLCNLSEIDLSGNPFECDCGLAR   39 (2740)
T ss_pred             CCCCCcCCccChHHhccCCCceEEEeeCCccccccccHH
Confidence            578888887777788888889999999999988887653

Note: this model has been restricted to the amino half because for technical reasons.

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.01  E-value=0.045  Score=49.57  Aligned_cols=87  Identities=17%  Similarity=0.219  Sum_probs=72.9

Q ss_pred             ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCcc
Q 044353          410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF  489 (596)
Q Consensus       410 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l  489 (596)
                      ..+......+.||++.|++- .....|+-++.|..||++.|++. -.|..+.....+..+++.+|..+...-+..+.+..
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~  113 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHP  113 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCccccccCCc
Confidence            45667788999999999987 55666888999999999999998 67888888888999999999988776677778888


Q ss_pred             ccccccCCC
Q 044353          490 GASSFAGND  498 (596)
Q Consensus       490 ~~~~~~~n~  498 (596)
                      +.....+|+
T Consensus       114 k~~e~k~~~  122 (326)
T KOG0473|consen  114 KKNEQKKTE  122 (326)
T ss_pred             chhhhccCc
Confidence            777777776

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=80.77  E-value=0.75  Score=47.41  Aligned_cols=36  Identities=25%  Similarity=0.271  Sum_probs=17.7

Q ss_pred             cccCCeeeccCccCcccC--CccccCCCCCCEEECCCC
Q 044353          415 LQGLQSLNLSHNLFTGRI--PDNIGVMRSIESLDFSAN  450 (596)
Q Consensus       415 l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N  450 (596)
                      .+.+..++|++|++....  ...-...|.|+.|+|++|
T Consensus       217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N  254 (585)
T KOG3763|consen  217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN  254 (585)
T ss_pred             CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence            345566667777664211  111122355666666666

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=80.75  E-value=0.59  Score=25.87  Aligned_cols=15  Identities=33%  Similarity=0.476  Sum_probs=6.7

Q ss_pred             CCCcEEEcccCcCcc
Q 044353          118 KKLYYLDISSTRISA  132 (596)
Q Consensus       118 ~~L~~L~l~~n~i~~  132 (596)
                      ++|+.|++++|++++
T Consensus         2 ~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    2 PNLETLDLSNNQITD   16 (24)
T ss_dssp             TT-SEEE-TSSBEHH
T ss_pred             CCCCEEEccCCcCCH
Confidence            445555555555543

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	596
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-29
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-29
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-11

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  127 bits (318), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 147/589 (24%), Positives = 218/589 (37%), Gaps = 124/589 (21%)
Query: 16  QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            + R   L  LD+S+N  +  IP  LG  + L++LD+S NKL+G  S       T+L + 
Sbjct: 192 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 249
Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
               N  V                       GP  PL L+S   L YL ++  + + +IP
Sbjct: 250 NISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENKFTGEIP 283
Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFD----------------SPSVPLITTPSLLGS- 178
                +      L++SGN  YG VP F                 S  +P+ T   + G  
Sbjct: 284 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 343
Query: 179 -------------------------IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN 213
                                      DLS+N  SG I   +CQ  N    ++ L L  N
Sbjct: 344 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNN 401
Query: 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA------------------------ 249
            F+  IP    N   L  L+L  N  +G++P S+G+                        
Sbjct: 402 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461
Query: 250 XXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS 309
                          G IP+   N + L  + +  N L G IP WIG     L IL L +
Sbjct: 462 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSN 520
Query: 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369
           N F G+ P +L    SL  LD+  N  +GTIP  +   S     +       ++  + G 
Sbjct: 521 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 580
Query: 370 NEIVEDA--LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
            +    A  LL  +G   E  + L+     +I+   + G       N   +  L++S+N+
Sbjct: 581 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 640
Query: 428 F------------------------TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXX 463
                                    +G IPD +G +R +  LD S+N+L G+IPQ+M   
Sbjct: 641 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 700
Query: 464 XXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSNCTEKN 511
                         G IP   Q ++F  + F  N  LCG PL  C   N
Sbjct: 701 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 749

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  126 bits (316), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 147/589 (24%), Positives = 218/589 (37%), Gaps = 124/589 (21%)
Query: 16  QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            + R   L  LD+S+N  +  IP  LG  + L++LD+S NKL+G  S       T+L + 
Sbjct: 195 DVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRA-ISTCTELKLL 252
Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
               N  V                       GP  PL L+S   L YL ++  + + +IP
Sbjct: 253 NISSNQFV-----------------------GPIPPLPLKS---LQYLSLAENKFTGEIP 286
Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFD----------------SPSVPLITTPSLLGS- 178
                +      L++SGN  YG VP F                 S  +P+ T   + G  
Sbjct: 287 DFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLK 346
Query: 179 -------------------------IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN 213
                                      DLS+N  SG I   +CQ  N    ++ L L  N
Sbjct: 347 VLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNN 404
Query: 214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA------------------------ 249
            F+  IP    N   L  L+L  N  +G++P S+G+                        
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464
Query: 250 XXXXXXXXXXXXXXXGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS 309
                          G IP+   N + L  + +  N L G IP WIG     L IL L +
Sbjct: 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSN 523
Query: 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369
           N F G+ P +L    SL  LD+  N  +GTIP  +   S     +       ++  + G 
Sbjct: 524 NSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGM 583
Query: 370 NEIVEDA--LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
            +    A  LL  +G   E  + L+     +I+   + G       N   +  L++S+N+
Sbjct: 584 KKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNM 643
Query: 428 F------------------------TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMXXX 463
                                    +G IPD +G +R +  LD S+N+L G+IPQ+M   
Sbjct: 644 LSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSAL 703
Query: 464 XXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGN-DLCGAPLSNCTEKN 511
                         G IP   Q ++F  + F  N  LCG PL  C   N
Sbjct: 704 TMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSN 752

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 78/291 (26%), Positives = 112/291 (38%), Gaps = 94/291 (32%)
Query: 267 IPTSFRNLSILKALDMGE-NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS 325
           IP+S  NL  L  L +G  N LVG IP  I +  ++L  L +      G  P  L ++ +
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGAIPDFLSQIKT 126
Query: 326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN-SGIFYASSGDNEIVEDALLVTKGFL 384
           L  LD +YN+LSGT+P  I          SS PN  GI +  +  +  + D+        
Sbjct: 127 LVTLDFSYNALSGTLPPSI----------SSLPNLVGITFDGNRISGAIPDS-------- 168
Query: 385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNL----------------------------- 415
             Y S   L  S+ IS+N  +G+IP    NL                             
Sbjct: 169 --YGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKI 226
Query: 416 -----------------QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 458
                            + L  L+L +N   G +P  +  ++ + SL+ S N L G+IPQ
Sbjct: 227 HLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286
Query: 459 SMXXXXXXXXXXXXXXXXXGEIPSSTQLQSFGASSFAGND-LCGAPLSNCT 508
                                      LQ F  S++A N  LCG+PL  CT
Sbjct: 287 ------------------------GGNLQRFDVSAYANNKCLCGSPLPACT 313

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	596
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-118
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-90
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-87
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-86
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-42
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-24
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-18
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-74
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-56
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-50
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-47
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-37
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-50
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-47
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-38
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-34
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-29
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-49
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-42
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-40
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-39
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-30
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-45
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-40
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-38
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-27
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-43
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-41
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-40
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-38
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-34
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-29
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-28
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-33
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-27
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-23
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-18
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-25
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-22
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-18
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	9e-08
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-26
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-19
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-17
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-24
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-21
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-20
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-20
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-23
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-19
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-16
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-15
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-08
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-05
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-04
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-15
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-19
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-18
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-17
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-15
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-12
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-10
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-09
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-09
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-15
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	7e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	8e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-09
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	7e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	9e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	4e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  368 bits (948), Expect = e-118
 Identities = 146/515 (28%), Positives = 212/515 (41%), Gaps = 47/515 (9%)

Query: 1   SLFLRRSQFYGHLTNQL-GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG 59
            L L  ++F G + + L G   TL  LDLS N   G +P   G  + LE L LS+N  +G
Sbjct: 273 YLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG 332

Query: 60  TVSEIHFLNLTQLLVFRAHGNSLVFKINPNWV--PPFQLAFLELRSCHLGPRFP--LWLQ 115
            +     L +  L V     N    ++ P  +      L  L+L S +        L   
Sbjct: 333 ELPMDTLLKMRGLKVLDLSFNEFSGEL-PESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 116 SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSL 175
            +  L  L + +   + KIP    N   +   L++S N + G +P        L +   L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSN-CSELVSLHLSFNYLSGTIPSS------LGSLSKL 444

Query: 176 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLG 235
                 L  N L G I   +       K +E L L  N  + +IP    N   L  ++L 
Sbjct: 445 --RDLKLWLNMLEGEIPQELMYV----KTLETLILDFNDLTGEIPSGLSNCTNLNWISLS 498

Query: 236 NNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWI 295
           NN  TG +P  IG L +L  L L NN  SG IP    +   L  LD+  N   G IP  +
Sbjct: 499 NNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM 558

Query: 296 GETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYN--SLSGTIPRCINNFSAMATT 353
            +         + +N   G   + +   G  +    A N     G     +N  S     
Sbjct: 559 FK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613

Query: 354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT 413
           + +                         G           +  +D+S N  SG IP E+ 
Sbjct: 614 NITSRV--------------------YGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIG 653

Query: 414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
           ++  L  LNL HN  +G IPD +G +R +  LD S+N+L G+IPQ+MS L+ L  ++LSN
Sbjct: 654 SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

Query: 474 NNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNC 507
           NNL+G IP   Q ++F  + F  N  LCG PL  C
Sbjct: 714 NNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRC 748

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  294 bits (754), Expect = 3e-90
 Identities = 117/513 (22%), Positives = 202/513 (39%), Gaps = 84/513 (16%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L +  + F   +   LG    L+ LD+S N ++G    ++     L+ L++S+N+  G 
Sbjct: 204 FLDVSSNNFSTGI-PFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGP 262

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF--QLAFLELRSCHLGPRFPLWLQSQK 118
           +     L L  L       N    +I P+++      L  L+L   H     P +  S  
Sbjct: 263 IPP---LPLKSLQYLSLAENKFTGEI-PDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCS 318

Query: 119 KLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS 178
            L  L +SS   S ++P      +     L++S N+  G +P+  +       + SL   
Sbjct: 319 LLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLT-----NLSASL--L 371

Query: 179 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
             DLS+N  SG I   +CQ  N    ++ L L  N F+  IP    N   L  L+L  N 
Sbjct: 372 TLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY 429

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET 298
            +G++P S+G+L+ L  L L  N L G IP     +  L+ L +  N+L G IP+ +   
Sbjct: 430 LSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN- 488

Query: 299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP 358
            + L  ++L +N+  G+ P  + RL +L IL ++ NS SG IP  + +            
Sbjct: 489 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCR---------- 538

Query: 359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGL 418
                                            +L+  +D++ N F+G IP  +    G 
Sbjct: 539 ---------------------------------SLIW-LDLNTNLFNGTIPAAMFKQSGK 564

Query: 419 QSLNL----------------------SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI 456
            + N                       +   F G   + +  + +    + ++    G  
Sbjct: 565 IAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624

Query: 457 PQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQS 488
             +  N   + +L++S N L+G IP     +  
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  286 bits (735), Expect = 2e-87
 Identities = 139/526 (26%), Positives = 219/526 (41%), Gaps = 55/526 (10%)

Query: 1   SLFLRRSQFYGHL--TNQLGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNNKL 57
           SL L R+   G +     LG    L+ L++S+NT++ P  +S G ++ +LE LDLS N +
Sbjct: 104 SLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSI 163

Query: 58  NGTV--SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF----QLAFLELRSCHLGPRFP 111
           +G      +      +L      GN +   +             L FL++ S +     P
Sbjct: 164 SGANVVGWVLSDGCGELKHLAISGNKISGDV------DVSRCVNLEFLDVSSNNFSTGIP 217

Query: 112 LWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLIT 171
            +L     L +LDIS  ++S    R       +   LN+S NQ  G +P     S+    
Sbjct: 218 -FLGDCSALQHLDISGNKLSGDFSRAIST-CTELKLLNISSNQFVGPIPPLPLKSL---- 271

Query: 172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRM 231
                     L+ N  +G I   +         +  L LS NHF   +P  + +   L  
Sbjct: 272 ------QYLSLAENKFTGEIPDFLS---GACDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322

Query: 232 LNLGNNNFTGSLPM-SIGALNSLMSLNLRNNRLSGIIPTSFRNLSI-LKALDMGENELVG 289
           L L +NNF+G LPM ++  +  L  L+L  N  SG +P S  NLS  L  LD+  N   G
Sbjct: 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSG 382

Query: 290 NIPTWIGE-TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
            I   + +   + L  L L++N F G  P  L     L  L +++N LSGTIP  + + S
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLS 442

Query: 349 AMATTDSSDPN-SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE 407
            +           G                             +  + ++ +  N+ +GE
Sbjct: 443 KLRDLKLWLNMLEGEIPQELMY---------------------VKTLETLILDFNDLTGE 481

Query: 408 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 467
           IP  ++N   L  ++LS+N  TG IP  IG + ++  L  S N  SG IP  + +   L 
Sbjct: 482 IPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541

Query: 468 YLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNIL 513
           +L+L+ N  NG IP++   QS   ++          + N   K   
Sbjct: 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  283 bits (726), Expect = 4e-86
 Identities = 126/484 (26%), Positives = 202/484 (41%), Gaps = 68/484 (14%)

Query: 7   SQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHF 66
           +  +  +++ L     L +L LSN+ +NG +       A+L  LDLS N L+G V+ +  
Sbjct: 63  NVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTS 121

Query: 67  L-NLTQLLVFRAHGNSLVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQ---KKLY 121
           L + + L       N+L F    +       L  L+L +  +     +         +L 
Sbjct: 122 LGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELK 181

Query: 122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD 181
           +L IS  +IS  +      ++   ++L+VS N    G+P             +L     D
Sbjct: 182 HLAISGNKISGDVDVSRCVNL---EFLDVSSNNFSTGIPFLGD-------CSAL--QHLD 229

Query: 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
           +S N LSG     I         ++ L +S N F   IP        L+ L+L  N FTG
Sbjct: 230 ISGNKLSGDFSRAIST----CTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTG 283

Query: 242 SLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
            +P  + GA ++L  L+L  N   G +P  F + S+L++L +  N   G +P        
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR 343

Query: 301 RLMILNLRSNKFHGDFPIQLCRL-GSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
            L +L+L  N+F G+ P  L  L  SL  LD++ N+ SG I   +               
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNP----------- 392

Query: 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ 419
                                           N ++ + +  N F+G+IP  ++N   L 
Sbjct: 393 -------------------------------KNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 420 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479
           SL+LS N  +G IP ++G +  +  L    N L G+IPQ +  +  L  L L  N+L GE
Sbjct: 422 SLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGE 481

Query: 480 IPSS 483
           IPS 
Sbjct: 482 IPSG 485

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  162 bits (412), Expect = 1e-42
 Identities = 65/274 (23%), Positives = 114/274 (41%), Gaps = 54/274 (19%)

Query: 228 RLRMLNLGNNNFT---GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
           ++  ++L +        ++  S+ +L  L SL L N+ ++G +   F+  + L +LD+  
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109

Query: 285 NELVGNIPT--WIGETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLSGTIP 341
           N L G + T   +G   S L  LN+ SN       +    +L SL++LD++ NS+SG   
Sbjct: 110 NSLSGPVTTLTSLGS-CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANV 168

Query: 342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK 401
                                                               ++ + IS 
Sbjct: 169 VGWVLSDG-----------------------------------------CGELKHLAISG 187

Query: 402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461
           N  SG++ V  +    L+ L++S N F+  IP  +G   +++ LD S N+LSG   +++S
Sbjct: 188 NKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 462 NLSFLNYLNLSNNNLNGEIPSS--TQLQSFGASS 493
             + L  LN+S+N   G IP      LQ    + 
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  106 bits (267), Expect = 3e-24
 Identities = 47/240 (19%), Positives = 79/240 (32%), Gaps = 63/240 (26%)

Query: 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTI 340
               N     + + +    + L  L L ++  +G          SL  LD++ NSLSG +
Sbjct: 59  SKPLNVGFSAVSSSLLS-LTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPV 116

Query: 341 PRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV--RSID 398
                                                           S+ +    + ++
Sbjct: 117 T--------------------------------------------TLTSLGSCSGLKFLN 132

Query: 399 ISKNNFSGEIPVE-VTNLQGLQSLNLSHNLFTGRIPDNI---GVMRSIESLDFSANQLSG 454
           +S N       V     L  L+ L+LS N  +G              ++ L  S N++SG
Sbjct: 133 VSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISG 192

Query: 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPS---STQLQSFGASSFAGNDLCG---APLSNCT 508
            +   +S    L +L++S+NN +  IP     + LQ    S    N L G     +S CT
Sbjct: 193 DVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISG---NKLSGDFSRAISTCT 247

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 86.5 bits (215), Expect = 7e-18
 Identities = 38/193 (19%), Positives = 75/193 (38%), Gaps = 37/193 (19%)

Query: 321 CRLGSLQILDVAYNSLS---GTIPRCINNFSAMATTDSSDPN-SGIFYASSGDNEIVEDA 376
           CR   +  +D++   L+     +   + + + + +   S+ + +G               
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKC-------- 98

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP--VEVTNLQGLQSLNLSHNLFTGRIPD 434
                            + S+D+S+N+ SG +     + +  GL+ LN+S N        
Sbjct: 99  --------------SASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKV 144

Query: 435 NIGV-MRSIESLDFSANQLSGQIPQSM---SNLSFLNYLNLSNNNLNGEIPSS--TQLQS 488
           + G+ + S+E LD SAN +SG              L +L +S N ++G++  S    L+ 
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEF 204

Query: 489 FGASSFAGNDLCG 501
              SS   N+   
Sbjct: 205 LDVSS---NNFST 214

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  238 bits (611), Expect = 2e-74
 Identities = 92/347 (26%), Positives = 139/347 (40%), Gaps = 59/347 (17%)

Query: 170 ITTPSLLGS---IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS--EDIPDCWM 224
           +  P+ L S     D  N    G +    C  +  +  +  L LS  +      IP    
Sbjct: 18  LGNPTTLSSWLPTTDCCNRTWLGVL----CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 225 NWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
           N P L  L +G  NN  G +P +I  L  L  L + +  +SG IP     +  L  LD  
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSL-QILDVAYNSLSGTIPR 342
            N L G +P  I      L+ +    N+  G  P        L   + ++ N L+G IP 
Sbjct: 134 YNALSGTLPPSISS-LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP 192

Query: 343 CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN 402
              N                                            LNL   +D+S+N
Sbjct: 193 TFAN--------------------------------------------LNLAF-VDLSRN 207

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462
              G+  V   + +  Q ++L+ N     +   +G+ +++  LD   N++ G +PQ ++ 
Sbjct: 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 463 LSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNCT 508
           L FL+ LN+S NNL GEIP    LQ F  S++A N  LCG+PL  CT
Sbjct: 267 LKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT 313

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  140 bits (356), Expect = 1e-37
 Identities = 76/319 (23%), Positives = 116/319 (36%), Gaps = 67/319 (21%)

Query: 26  LDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL-NLTQLLVFR-AHGNSLV 83
            D  N T  G +  +  Q   +  LDLS   L         L NL  L        N+LV
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 84  FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIF 143
             I      P  +A L                   +L+YL I+ T +S  IP        
Sbjct: 91  GPI------PPAIAKL------------------TQLHYLYITHTNVSGAIPDFLSQI-- 124

Query: 144 QYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSK 203
                                         +L     D S NALSG++   I        
Sbjct: 125 -----------------------------KTL--VTLDFSYNALSGTLPPSISS----LP 149

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRL-RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
           N+  +    N  S  IPD + ++ +L   + +  N  TG +P +   LN L  ++L  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           L G     F +    + + + +N L  ++          L  L+LR+N+ +G  P  L +
Sbjct: 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 323 LGSLQILDVAYNSLSGTIP 341
           L  L  L+V++N+L G IP
Sbjct: 267 LKFLHSLNVSFNNLCGEIP 285

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  139 bits (354), Expect = 2e-37
 Identities = 70/320 (21%), Positives = 120/320 (37%), Gaps = 65/320 (20%)

Query: 111 PLWLQSQKKLYYLDISSTRIS--AKIPRGFWNSIFQYDYLNVSG-NQIYGGVPKFDSPSV 167
                   ++  LD+S   +     IP    N  +  ++L + G N + G +P       
Sbjct: 43  CDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL-NFLYIGGINNLVGPIP------- 94

Query: 168 PLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWP 227
           P I   + L     +++  +SG+I   + Q     K +  L  S N  S  +P    + P
Sbjct: 95  PAIAKLTQL-HYLYITHTNVSGAIPDFLSQ----IKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 228 RLRMLNLGNNNFTGSLPMSIGALNSLM-SLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
            L  +    N  +G++P S G+ + L  S+ +  NRL+G IP +F NL+ L  +D+  N 
Sbjct: 150 NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNM 208

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           L G+     G        ++L  N    D   ++    +L  LD+  N + GT+P+ +  
Sbjct: 209 LEGDASVLFGS-DKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQ 266

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
              +                                             S+++S NN  G
Sbjct: 267 LKFL--------------------------------------------HSLNVSFNNLCG 282

Query: 407 EIPVEVTNLQGLQSLNLSHN 426
           EIP    NLQ       ++N
Sbjct: 283 EIPQG-GNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  138 bits (351), Expect = 7e-37
 Identities = 63/325 (19%), Positives = 115/325 (35%), Gaps = 70/325 (21%)

Query: 1   SLFLRRSQFYG--HLTNQLGRFKTLRALDLSN-NTVNGPIPLSLGQIANLEYLDLSNNKL 57
           +L L          + + L     L  L +   N + GPIP ++ ++  L YL +++  +
Sbjct: 54  NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNV 113

Query: 58  NGTV-SEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQS 116
           +G +   +    +  L+      N+L   +                        P  + S
Sbjct: 114 SGAIPDFLS--QIKTLVTLDFSYNALSGTL------------------------PPSISS 147

Query: 117 QKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
              L  +     RIS  IP  + +    +  + +S N++ G +P                
Sbjct: 148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP--------------- 192

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
                        +  +L         N+ F+ LS+N    D    + +    + ++L  
Sbjct: 193 -------------TFANL---------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 237 NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG 296
           N+    L   +G   +L  L+LRNNR+ G +P     L  L +L++  N L G IP   G
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--G 287

Query: 297 ETFSRLMILNLRSNKFHGDFPIQLC 321
               R  +    +NK     P+  C
Sbjct: 288 GNLQRFDVSAYANNKCLCGSPLPAC 312

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  125 bits (316), Expect = 4e-32
 Identities = 50/225 (22%), Positives = 83/225 (36%), Gaps = 53/225 (23%)

Query: 267 IPTSFRNLSIL----KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI--QL 320
           I     N + L       D      +G +     +T  R+  L+L        +PI   L
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQT-YRVNNLDLSGLNLPKPYPIPSSL 72

Query: 321 CRLGSLQILDVA-YNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV 379
             L  L  L +   N+L G IP  I   +                               
Sbjct: 73  ANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------------- 101

Query: 380 TKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 439
                        L   + I+  N SG IP  ++ ++ L +L+ S+N  +G +P +I  +
Sbjct: 102 ------------QL-HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL 148

Query: 440 RSIESLDFSANQLSGQIPQSMSNLSFL-NYLNLSNNNLNGEIPSS 483
            ++  + F  N++SG IP S  + S L   + +S N L G+IP +
Sbjct: 149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 88.4 bits (220), Expect = 2e-19
 Identities = 33/145 (22%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 374 EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR-- 431
           + ALL  K  L    ++ + + + D     + G +    T    + +L+LS         
Sbjct: 8   KQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYP 67

Query: 432 IPDNIGVMRSIESLDFS-ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQL 486
           IP ++  +  +  L     N L G IP +++ L+ L+YL +++ N++G IP        L
Sbjct: 68  IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL 127

Query: 487 QSFGASSFAGNDLCG---APLSNCT 508
            +     F+ N L G     +S+  
Sbjct: 128 VTL---DFSYNALSGTLPPSISSLP 149

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  200 bits (511), Expect = 3e-56
 Identities = 78/484 (16%), Positives = 159/484 (32%), Gaps = 37/484 (7%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEI--HFLNLTQLLVFRAHG 79
           +L+ L+LS+N +    P     I  L  L L+N +L  +++E     L  T +       
Sbjct: 172 SLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSN 231

Query: 80  NSLVFKINPNW---VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
           + L    +      +    L  L+L   +L            +L Y  +    I      
Sbjct: 232 SQLS-TTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLIT---TPSLLGSIFDLSNNALSGSIFH 193
                +F   YLN+  +     +     P +   +      L     ++ +N + G   +
Sbjct: 291 SLHG-LFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL--EHLNMEDNDIPGIKSN 347

Query: 194 LICQGENFSKNIEFLKLSKNHFS--EDIPDCWMNWP--RLRMLNLGNNNFTGSLPMSIGA 249
           +         N+++L LS +  S      + +++     L +LNL  N  +     +   
Sbjct: 348 MFT---GLI-NLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW 403

Query: 250 LNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
           L  L  L+L  N +   +    +R L  +  + +  N+ +             L  L LR
Sbjct: 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFAL-VPSLQRLMLR 462

Query: 309 SNKFHG--DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS 366
                     P     L +L ILD++ N+++      +     +   D            
Sbjct: 463 RVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH--------- 513

Query: 367 SGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHN 426
              N +         G  + +   L+ +  +++  N F         +L  L+ ++L  N
Sbjct: 514 ---NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLN 570

Query: 427 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS-NLSFLNYLNLSNNNLNGEIPSSTQ 485
                         S++SL+   N ++    +        L  L++  N  +    S   
Sbjct: 571 NLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630

Query: 486 LQSF 489
             ++
Sbjct: 631 FVNW 634

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  184 bits (469), Expect = 1e-50
 Identities = 100/496 (20%), Positives = 172/496 (34%), Gaps = 40/496 (8%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L L  +Q          R+  L +LD+  NT++   P    ++  L+ L+L +N+L+  
Sbjct: 29  VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ- 87

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           +S+  F   T L       NS+    N  +V    L  L+L    L           + L
Sbjct: 88  LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENL 147

Query: 121 YYLDISSTRISAKIPRGFWNSIFQY-DYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
             L +S+ +I A                L +S NQI    P        L          
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFG-------- 199

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPD--CWMNWPRLRMLNLGNN 237
             L+N  L  S+   +C     + +I  L LS +  S         + W  L ML+L  N
Sbjct: 200 LFLNNVQLGPSLTEKLCLELANT-SIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258

Query: 238 NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG-----NIP 292
           N       S   L  L    L  N +  +   S   L  ++ L++  +         ++P
Sbjct: 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLP 318

Query: 293 TWIGETF---SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSA 349
                +F     L  LN+  N   G        L +L+ L ++ +  S         F +
Sbjct: 319 KIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL-TNETFVS 377

Query: 350 MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
           +        +S +   +   N+I             +  S L  +  +D+  N    E+ 
Sbjct: 378 L-------AHSPLHILNLTKNKI--------SKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 410 VEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG--QIPQSMSNLSFL 466
            +    L+ +  + LS+N +     ++  ++ S++ L      L      P     L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 467 NYLNLSNNNLNGEIPS 482
             L+LSNNN+      
Sbjct: 483 TILDLSNNNIANINDD 498

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  174 bits (442), Expect = 6e-47
 Identities = 89/476 (18%), Positives = 153/476 (32%), Gaps = 85/476 (17%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
              +  L+L++N +      +  + + L  LD+  N ++  +       L  L V     
Sbjct: 24  PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK-LEPELCQKLPMLKVLNLQH 82

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N L    +  +     L  L L S  +          QK L  LD+S   +S+       
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQV 142

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
                                             +L      LSNN +       +    
Sbjct: 143 Q-------------------------------LENL--QELLLSNNKIQALKSEELDIFA 169

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG---ALNSLMSL 256
           N S  ++ L+LS N   E  P C+    RL  L L N     SL   +    A  S+ +L
Sbjct: 170 NSS--LKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNL 227

Query: 257 NLRNNRLSGIIPTSFRNLSI--LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG 314
           +L N++LS    T+F  L    L  LD+  N L             +L    L  N    
Sbjct: 228 SLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAW-LPQLEYFFLEYNNIQH 286

Query: 315 DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVE 374
            F   L  L +++ L++  +    +I                               + +
Sbjct: 287 LFSHSLHGLFNVRYLNLKRSFTKQSIS---------------------------LASLPK 319

Query: 375 DALLVTKGFLVEYNSILNL--VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432
                     ++  S   L  +  +++  N+  G      T L  L+ L+LS++  + R 
Sbjct: 320 ----------IDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRT 369

Query: 433 PDNIG----VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
             N          +  L+ + N++S     + S L  L  L+L  N +  E+    
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  148 bits (377), Expect = 3e-38
 Identities = 61/320 (19%), Positives = 112/320 (35%), Gaps = 27/320 (8%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           +L++N L             +S  +  L +  N  S+  P+     P L++LNL +N  +
Sbjct: 31  NLTHNQLRRLPAANF---TRYS-QLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
                +     +L  L+L +N +  I    F     L  LD+  N L         +   
Sbjct: 87  QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL-E 145

Query: 301 RLMILNLRSNKFHG--DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP 358
            L  L L +NK        + +    SL+ L+++ N +    P C +    +     +  
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN-- 203

Query: 359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG- 417
                     + ++      +T+   +E       +R++ +S +  S         L+  
Sbjct: 204 ----------NVQLGPS---LTEKLCLELA--NTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 418 -LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            L  L+LS+N       D+   +  +E      N +      S+  L  + YLNL  +  
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 477 NGEIPSSTQLQSFGASSFAG 496
              I S   L      SF  
Sbjct: 309 KQSI-SLASLPKIDDFSFQW 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  147 bits (373), Expect = 1e-37
 Identities = 75/463 (16%), Positives = 136/463 (29%), Gaps = 100/463 (21%)

Query: 46  NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCH 105
           + E  D S+ KL   V +    N+T L +     N L        +P             
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPTNITVLNL---THNQLRR------LPAANFTRY------ 48

Query: 106 LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165
                        +L  LD+    IS   P            LN+  N++          
Sbjct: 49  ------------SQLTSLDVGFNTISKLEPELCQKLP-MLKVLNLQHNELSQ------LS 89

Query: 166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
                   +L  +   L +N++     +   +     KN+  L LS N  S       + 
Sbjct: 90  DKTFAFCTNL--TELHLMSNSIQKIKNNPFVK----QKNLITLDLSHNGLSSTKLGTQVQ 143

Query: 226 WPRLRMLNLGNNNFTGSLPMSIGALN--SLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
              L+ L L NN         +      SL  L L +N++    P  F  +  L  L + 
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203

Query: 284 ENELVGNIPTWIGETF--SRLMILNLRSNKFHG--DFPIQLCRLGSLQILDVAYNSLSGT 339
             +L  ++   +      + +  L+L +++     +      +  +L +LD++YN+L+  
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 340 IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI 399
                                                                L     +
Sbjct: 264 GNDSFAWLP-------------------------------------------QL-EYFFL 279

Query: 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN---------IGVMRSIESLDFSAN 450
             NN        +  L  ++ LNL  +     I               ++ +E L+   N
Sbjct: 280 EYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 451 QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASS 493
            + G      + L  L YL+LSN+  +    ++    S   S 
Sbjct: 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSP 382

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  134 bits (340), Expect = 2e-33
 Identities = 60/327 (18%), Positives = 113/327 (34%), Gaps = 23/327 (7%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
              +  +             K L  L++ +N + G        + NL+YL LSN+  +  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 61  VSEIH---FLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLW-LQS 116
                    L  + L +     N +    +  +     L  L+L    +G        + 
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 117 QKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
            + ++ + +S  +   ++ R  +  +     L +    +       DS   P     +L 
Sbjct: 429 LENIFEIYLSYNKYL-QLTRNSFALVPSLQRLMLRRVALKN----VDSSPSPFQPLRNLT 483

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE--------DIPDCWMNWPR 228
             I DLSNN ++     ++       + +E L L  N+ +                    
Sbjct: 484 --ILDLSNNNIANINDDMLEG----LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSH 537

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
           L +LNL +N F          L  L  ++L  N L+ +  + F N   LK+L++ +N + 
Sbjct: 538 LHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLIT 597

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHGD 315
                  G  F  L  L++R N F   
Sbjct: 598 SVEKKVFGPAFRNLTELDMRFNPFDCT 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  182 bits (463), Expect = 7e-50
 Identities = 71/525 (13%), Positives = 159/525 (30%), Gaps = 76/525 (14%)

Query: 1   SLFLRRSQFYGHLTNQLGR--FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN 58
                R  +     +   R  F  L    ++++     I  S         +   +N + 
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 59  GTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQK 118
                +  + LT+L  F    +  V +                          L   + K
Sbjct: 197 FVSKAV--MRLTKLRQFYMGNSPFVAEN-----ICEAWENENSEYAQQYKTEDLKWDNLK 249

Query: 119 KLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS 178
            L  +++ +     K+P      + +   +NV+ N+                       +
Sbjct: 250 DLTDVEVYNCPNLTKLPTFLKA-LPEMQLINVACNRGIS-----------GEQLKDDWQA 297

Query: 179 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-DIPDCWMNWPRLRMLNLGNN 237
           + D                     + I+ + +  N+     +        +L ML    N
Sbjct: 298 LADAPV-----------------GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN 340

Query: 238 NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
              G LP + G+   L SLNL  N+++ I          ++ L    N+L      +  +
Sbjct: 341 QLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 298 TFSRLMILNLRSNKFHG-------DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAM 350
           + S +  ++   N+                 +  ++  ++++ N +S       +  S +
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 351 ATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV 410
           ++ +               N + E      K     + +   L  SID+  N  +  +  
Sbjct: 460 SSINLM------------GNMLTEIPKNSLKDENENFKNTYLL-TSIDLRFNKLTK-LSD 505

Query: 411 E--VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL------DFSANQLSGQIPQSMSN 462
           +   T L  L  ++LS+N F+   P       +++        D   N+   + P+ ++ 
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL 564

Query: 463 LSFLNYLNLSNNNLNGEIPSS--TQLQSFGASSFAGNDLCGAPLS 505
              L  L + +N++  ++       +          N      LS
Sbjct: 565 CPSLTQLQIGSNDIR-KVNEKITPNISVL---DIKDNPNISIDLS 605

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  175 bits (446), Expect = 1e-47
 Identities = 68/501 (13%), Positives = 139/501 (27%), Gaps = 91/501 (18%)

Query: 16  QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            L     +  L L     +G +P ++GQ+  LE L L ++             ++  +  
Sbjct: 76  SLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM-- 133

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQK--KLYYLDISSTRISAK 133
                                   +    H    F  +   +    L    I+S      
Sbjct: 134 -------------------SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKS 174

Query: 134 IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFH 193
           I +    ++ +   +    N I   V K       ++    L    F + N+        
Sbjct: 175 IKKSSRITL-KDTQIGQLSNNI-TFVSKA------VMRLTKL--RQFYMGNSPFVAENI- 223

Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL 253
                    +  E          +     W N   L  + + N      LP  + AL  +
Sbjct: 224 --------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

Query: 254 MSLNLRNNRLSGI--------IPTSFRNLSILKALDMGENEL-VGNIPTWIGETFSRLMI 304
             +N+  NR                      ++ + +G N L    + T + +   +L +
Sbjct: 276 QLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK-MKKLGM 334

Query: 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY 364
           L    N+  G  P        L  L++AYN ++            +              
Sbjct: 335 LECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE----------NLS 383

Query: 365 ASSGDNEIVEDALLVTKGFLVEYNSILNLV--RSIDISKNNFSG-------EIPVEVTNL 415
            +   N++           +       ++    +ID S N            +       
Sbjct: 384 FAH--NKLKY---------IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 416 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG-------QIPQSMSNLSFLNY 468
             + S+NLS+N  +    +       + S++   N L+           ++  N   L  
Sbjct: 433 INVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTS 492

Query: 469 LNLSNNNLNGEIPSSTQLQSF 489
           ++L  N L   +    +  + 
Sbjct: 493 IDLRFNKLTK-LSDDFRATTL 512

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  174 bits (444), Expect = 2e-47
 Identities = 73/501 (14%), Positives = 137/501 (27%), Gaps = 116/501 (23%)

Query: 4   LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE 63
              +Q Y     +    K L  +++ N      +P  L  +  ++ ++++ N+       
Sbjct: 232 SEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 64  IHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYL 123
                                                                 +K+  +
Sbjct: 292 KDDWQ-----------------------------------------ALADAPVGEKIQII 310

Query: 124 DISSTRISA-KIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL 182
            I    +    +       + +   L    NQ+ G +P F S          L  +  +L
Sbjct: 311 YIGYNNLKTFPVETSLQK-MKKLGMLECLYNQLEGKLPAFGS-------EIKL--ASLNL 360

Query: 183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPD--CWMNWPRLRMLNLGNNNFT 240
           + N ++    +       F++ +E L  + N     IP+     +   +  ++   N   
Sbjct: 361 AYNQITEIPANFC----GFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIG 415

Query: 241 G-------SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG---N 290
                    L  +     ++ S+NL NN++S      F   S L ++++  N L     N
Sbjct: 416 SVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475

Query: 291 IPTWIGETFSR---LMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRCINN 346
                 E F     L  ++LR NK        +   L  L  +D++YNS S   P    N
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLN 534

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
            S +                                          +    D   N    
Sbjct: 535 SSTL--------------------------------------KGFGIRNQRDAQGNRTLR 556

Query: 407 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 466
           E P  +T    L  L +  N     + + I    +I  LD   N         +      
Sbjct: 557 EWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 467 NYLNLSNNNLNGEIPSSTQLQ 487
               L  +    +I     L 
Sbjct: 614 GMYMLFYDKTQ-DIRGCDALD 633

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  147 bits (373), Expect = 7e-38
 Identities = 49/384 (12%), Positives = 115/384 (29%), Gaps = 33/384 (8%)

Query: 104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFD 163
              G +  + L S  ++  L +     S ++P      + + + L +  +        F 
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFG 125

Query: 164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223
              +    +                 +             ++    ++ +   + I    
Sbjct: 126 PKGISANMSDEQK----QKMRMHYQKTFVDYD--PREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
               +   +   +NN T  +  ++  L  L    + N+                +     
Sbjct: 180 RITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE----- 233

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
             +               L  + + +       P  L  L  +Q+++VA N       + 
Sbjct: 234 YAQQYKTEDLKWDN-LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS-GEQL 291

Query: 344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV--RSIDISK 401
            +++ A+           I Y     N +                S+  +     ++   
Sbjct: 292 KDDWQAL-ADAPVGEKIQIIYIG--YNNLKT---------FPVETSLQKMKKLGMLECLY 339

Query: 402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ--S 459
           N   G++P    +   L SLNL++N  T    +  G    +E+L F+ N+L   IP    
Sbjct: 340 NQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFD 397

Query: 460 MSNLSFLNYLNLSNNNLNGEIPSS 483
             ++S ++ ++ S N +      +
Sbjct: 398 AKSVSVMSAIDFSYNEIGSVDGKN 421

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  135 bits (343), Expect = 7e-34
 Identities = 64/450 (14%), Positives = 126/450 (28%), Gaps = 105/450 (23%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNN--------TVNGPIPLSLGQIANLEYLDL 52
            + +        L   L     ++ ++++ N          +            ++ + +
Sbjct: 253 DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYI 312

Query: 53  SNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPL 112
             N L     E     + +L +     N L  K+                S         
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP------------AFGSE-------- 352

Query: 113 WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITT 172
                 KL  L+++  +I+ +IP  F     Q + L+ + N++      FD+ SV +++ 
Sbjct: 353 -----IKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSA 406

Query: 173 PSLLGSIFDLSNNALSGSI---FHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRL 229
                   D S N +       F  +        N+  + LS N  S+   + +     L
Sbjct: 407 -------IDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 230 RMLNLGNNNFTG-------SLPMSIGALNSLMSLNLRNNRLSGIIPT-SFRNLSILKALD 281
             +NL  N  T            +      L S++LR N+L+ +        L  L  +D
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGID 519

Query: 282 MGENELVGNIPTWIG-----ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL 336
           +  N      PT        + F      + + N+   ++P  +    SL  L +  N +
Sbjct: 520 LSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI 578

Query: 337 SGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRS 396
              +                                                 I   +  
Sbjct: 579 R-KVN----------------------------------------------EKITPNISV 591

Query: 397 IDISKNNFSGEIPVEVTNLQGLQSLNLSHN 426
           +DI  N         V          L ++
Sbjct: 592 LDIKDNPNISIDLSYVCPYIEAGMYMLFYD 621

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  122 bits (309), Expect = 1e-29
 Identities = 65/360 (18%), Positives = 122/360 (33%), Gaps = 56/360 (15%)

Query: 1   SLFLRRSQF-YGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG 59
            +++  +      +   L + K L  L+   N + G +P + G    L  L+L+ N++  
Sbjct: 309 IIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE 367

Query: 60  TVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKK 119
             +        Q+       N L       ++P       + +S                
Sbjct: 368 IPANF-CGFTEQVENLSFAHNKL------KYIPNI----FDAKSV-------------SV 403

Query: 120 LYYLDISSTRISAKIPRGFWN---SIFQY---DYLNVSGNQIYGGVPKFDSPSVPLITTP 173
           +  +D S   I +   + F     + F+      +N+S NQI     +       L +T 
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE-------LFSTG 456

Query: 174 SLLGSIFDLSNNALSG-SIFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWM-NWPRL 229
           S L S  +L  N L+      L  + ENF     +  + L  N  ++   D      P L
Sbjct: 457 SPL-SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYL 515

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRN------NRLSGIIPTSFRNLSILKALDMG 283
             ++L  N+F+   P      ++L    +RN      NR     P        L  L +G
Sbjct: 516 VGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG 574

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
            N++   +   I      + +L+++ N         +C      +  + Y+     I  C
Sbjct: 575 SNDIRK-VNEKI---TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ-DIRGC 629

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 1e-22
 Identities = 29/273 (10%), Positives = 71/273 (26%), Gaps = 37/273 (13%)

Query: 233 NLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP 292
           N   + +     +S+ +   +  L+L     SG +P +   L+ L+ L +G +    N  
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 293 TWIGETFSRLM---ILNLRSNKFHGDFP--IQLCRLGSLQILDVAYNSLSGTIPRCINNF 347
            +  +  S  M           +   F           L    +  +    +I +     
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 348 SAMATTDSSDPN-SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV--RSIDISKNNF 404
                      N + +                          +++ L   R   +  + F
Sbjct: 183 LKDTQIGQLSNNITFVS------------------------KAVMRLTKLRQFYMGNSPF 218

Query: 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS 464
             E   E          N  +             ++ +  ++        ++P  +  L 
Sbjct: 219 VAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 465 FLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGN 497
            +  +N++ N            Q+   +     
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 82.4 bits (204), Expect = 1e-16
 Identities = 39/268 (14%), Positives = 83/268 (30%), Gaps = 37/268 (13%)

Query: 16  QLGRFKTLRALDLSNN-------TVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLN 68
                  + A+D S N           P+  +  +  N+  ++LSNN+++    E+ F  
Sbjct: 397 DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKEL-FST 455

Query: 69  LTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
            + L      GN L  +I  N +      F                     L  +D+   
Sbjct: 456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYL----------------LTSIDLRFN 498

Query: 129 RISAKIPRGFWNSIFQY-DYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNAL 187
           +++ K+   F  +   Y   +++S N      P     S  L      + +  D   N  
Sbjct: 499 KLT-KLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFG--IRNQRDAQGNRT 554

Query: 188 SGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI 247
                  I        ++  L++  N   + + +     P + +L++ +N         +
Sbjct: 555 LREWPEGITL----CPSLTQLQIGSNDIRK-VNEKIT--PNISVLDIKDNPNISIDLSYV 607

Query: 248 GALNSLMSLNLRNNRLSGIIPTSFRNLS 275
                     L  ++   I      ++ 
Sbjct: 608 CPYIEAGMYMLFYDKTQDIRGCDALDIK 635

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 19/163 (11%), Positives = 51/163 (31%), Gaps = 9/163 (5%)

Query: 366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSH 425
           +  D+ IV   L  T  ++ +Y ++  +  +++    +  G       N     + N   
Sbjct: 11  ALTDDAIVPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANW----NFNKEL 66

Query: 426 NLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL-----SNNNLNGEI 480
           +++  +   ++     +  L       SG++P ++  L+ L  L L       N      
Sbjct: 67  DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGP 126

Query: 481 PSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGN 523
              +   S               +     ++      +  + +
Sbjct: 127 KGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  179 bits (456), Expect = 4e-49
 Identities = 75/512 (14%), Positives = 143/512 (27%), Gaps = 79/512 (15%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           +L L  +              +L+ L      +       +G +  L+ L++++N +   
Sbjct: 80  TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVP----PFQLAFLELRSCHLGPRFPLWLQS 116
               +F NLT L       N +      +       P     L+L    +          
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 117 QKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
           + +L+ L + +   S  + +     +   +   +   +              L    +L 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
              F L+           +        N+    L            +      + L L N
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNC---LTNVSSFSLVSVTIERVKDFSYNF--GWQHLELVN 313

Query: 237 NNFT-------------------GSLPMSIGALNSLMSLNLRNNRLS--GIIPTSFRNLS 275
             F                    G    S   L SL  L+L  N LS  G    S    +
Sbjct: 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 276 ILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYN 334
            LK LD+  N ++     ++G    +L  L+ + +             L +L  LD+++ 
Sbjct: 374 SLKYLDLSFNGVITMSSNFLG--LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 335 SLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV 394
                     N  S++                                            
Sbjct: 432 HTRVAFNGIFNGLSSL-------------------------------------------- 447

Query: 395 RSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453
             + ++ N+F      ++ T L+ L  L+LS        P     + S++ L+ S N   
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 507

Query: 454 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQ 485
                    L+ L  L+ S N++        Q
Sbjct: 508 SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  158 bits (402), Expect = 8e-42
 Identities = 88/500 (17%), Positives = 164/500 (32%), Gaps = 59/500 (11%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           +L L  +      +     F  L+ LDLS   +      +   +++L  L L+ N +   
Sbjct: 32  NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS- 90

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL-GPRFPLWLQSQKK 119
           ++   F  L+ L    A   +L    N        L  L +    +   + P +  +   
Sbjct: 91  LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTN 150

Query: 120 LYYLDISSTRISAKIP---RGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
           L +LD+SS +I +      R           L++S N +    P              L 
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG-------AFKEIRL- 202

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS------EDIPDCWMNWPRLR 230
                L NN  S ++     QG      +E  +L    F       +           L 
Sbjct: 203 -HKLTLRNNFDSLNVMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 231 MLNL---GNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL 287
           +        + +   +      L ++ S +L +  +  +    F      + L++   + 
Sbjct: 259 IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKF 316

Query: 288 VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS--GTIPRCIN 345
            G  PT   ++  RL   + +              L SL+ LD++ N LS  G   +   
Sbjct: 317 -GQFPTLKLKSLKRLTFTSNKGGN-----AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
             +++   D S             N ++     ++  FL      L  +  +D   +N  
Sbjct: 371 GTTSLKYLDLS------------FNGVIT----MSSNFL-----GLEQLEHLDFQHSNLK 409

Query: 406 GEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNL 463
                 V  +L+ L  L++SH             + S+E L  + N       P   + L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 464 SFLNYLNLSNNNLNGEIPSS 483
             L +L+LS   L    P++
Sbjct: 470 RNLTFLDLSQCQLEQLSPTA 489

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  155 bits (393), Expect = 1e-40
 Identities = 88/500 (17%), Positives = 154/500 (30%), Gaps = 82/500 (16%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRA----LDLSNNTVNGPIPLSLGQIANLEYLDLSNNKL 57
           L L  ++        L     +      LDLS N +N   P +  +I  L  L L NN  
Sbjct: 154 LDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFD 212

Query: 58  NGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF------QLAFLELRSCHL---GP 108
           +  V +     L  L V R        + N              L   E R  +L     
Sbjct: 213 SLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 109 RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVP 168
                      +    + S  I       +    F + +L +   +  G  P     S+ 
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKF-GQFPTLKLKSLK 328

Query: 169 LITTPSLLGSIF------------DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS 216
            +T  S  G               DLS N LS        Q +  + ++++L LS N   
Sbjct: 329 RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLS--FKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 217 EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLS 275
             +   ++   +L  L+  ++N       S+  +L +L+ L++ +          F  LS
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 276 ILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335
            L+ L M  N    N    I      L  L+L   +     P     L SLQ+L++++N+
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 505

Query: 336 LSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVR 395
                       ++                                            ++
Sbjct: 506 FFSLDTFPYKCLNS--------------------------------------------LQ 521

Query: 396 SIDISKNNFSGEIPVEVTNLQG-LQSLNLSHNLFTGRIPDN--IGVMRSIESLDFSANQL 452
            +D S N+       E+ +    L  LNL+ N F         +  ++    L     ++
Sbjct: 522 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

Query: 453 SGQIPQSMSNLSFLNYLNLS 472
               P     +  L+ LN++
Sbjct: 582 ECATPSDKQGMPVLS-LNIT 600

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  152 bits (386), Expect = 1e-39
 Identities = 74/476 (15%), Positives = 132/476 (27%), Gaps = 74/476 (15%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
             + + LDLS N +      S      L+ LDLS  ++        + +L+ L      G
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGA-YQSLSHLSTLILTG 85

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N +                                     L  L    T +++       
Sbjct: 86  NPIQSLA------------------------LGAFSGLSSLQKLVAVETNLASLENFPIG 121

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
           +       LNV+ N I                  +L     DLS+N +       +    
Sbjct: 122 HLKTL-KELNVAHNLIQSF-----KLPEYFSNLTNL--EHLDLSSNKIQSIYCTDLRVLH 173

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP-MSIGALNSLMSLNL 258
                   L LS N  +   P  +    RL  L L NN  + ++    I  L  L    L
Sbjct: 174 QMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRL 232

Query: 259 RNNRLSG------IIPTSFRNLSIL--KALDMGENELVGNIPTWIGETFSRLMILNLRSN 310
                           ++   L  L  +   +   +   +    +    + +   +L S 
Sbjct: 233 VLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292

Query: 311 KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDN 370
                           Q L++            + +   +  T +   N+          
Sbjct: 293 TIERVKDFSY--NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE------- 343

Query: 371 EIVEDALLVTKGFLVEYNSILNLVRSIDISKN--NFSGEIPVEVTNLQGLQSLNLSHNLF 428
                               L  +  +D+S+N  +F G           L+ L+LS N  
Sbjct: 344 ------------------VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV 385

Query: 429 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSS 483
              +  N   +  +E LDF  + L      S+  +L  L YL++S+ +        
Sbjct: 386 IT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  125 bits (317), Expect = 1e-30
 Identities = 49/349 (14%), Positives = 92/349 (26%), Gaps = 65/349 (18%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           DLS N L     +           ++ L LS+          + +   L  L L  N   
Sbjct: 34  DLSFNPLRHLGSYSFFS----FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
                +   L+SL  L      L+ +      +L  LK L++  N +            +
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQI----LDVAYNSLSGTIPRCINNFSAMATTDSS 356
            L  L+L SNK    +   L  L  + +    LD++ N ++   P               
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR-------- 201

Query: 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNL 415
                                                +  + +  N  S  +       L
Sbjct: 202 -------------------------------------LHKLTLRNNFDSLNVMKTCIQGL 224

Query: 416 QGLQSLNLSHNLFTGRI---PDNIGVMRSIESLDFSANQLS------GQIPQSMSNLSFL 466
            GL+   L    F         +   +  + +L     +L+        I    + L+ +
Sbjct: 225 AGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNV 284

Query: 467 NYLNLSNNNLNGEIPSS--TQLQSFGASSFAGNDLCGAPLSNCTEKNIL 513
           +  +L +  +      S     Q     +          L +       
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 420 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479
           +       F  +IPDN+    S ++LD S N L      S  +   L  L+LS   +   
Sbjct: 11  TYQCMELNFY-KIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 480 IPSS 483
              +
Sbjct: 68  EDGA 71

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  168 bits (428), Expect = 2e-45
 Identities = 93/489 (19%), Positives = 174/489 (35%), Gaps = 60/489 (12%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           +L L  +         L   K L+ L      ++    + L     LE L L +N ++  
Sbjct: 85  TLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISS- 143

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           +         +L V     N++      +++    ++ L                 Q   
Sbjct: 144 IKLPKGFPTEKLKVLDFQNNAI------HYLSKEDMSSL----------------QQATN 181

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSL-LGSI 179
             L+++   I+   P  F +++FQ   LN  G Q    + K    S    T  SL LG+ 
Sbjct: 182 LSLNLNGNDIAGIEPGAFDSAVFQ--SLNFGGTQNLLVIFKGLKNS----TIQSLWLGTF 235

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
            D+ +  +S ++F  +C+      ++E + L K++F     + +  +  L+ L+L   + 
Sbjct: 236 EDMDDEDISPAVFEGLCE-----MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHL 290

Query: 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
           +  LP  +  L++L  L L  N+   +   S  N   L  L +  N     + T   E  
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349

Query: 300 SRLMILNLRSNKFH--GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357
             L  L+L  +         +QL  L  LQ L+++YN               +   D + 
Sbjct: 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA- 408

Query: 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG 417
                         +        +         L+L++ +++S +            L  
Sbjct: 409 -----------FTRLKV---KDAQSPFQN----LHLLKVLNLSHSLLDISSEQLFDGLPA 450

Query: 418 LQSLNLSHNLFTGRIPDNIGV---MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 474
           LQ LNL  N F             +  +E L  S   LS     + ++L  +N+++LS+N
Sbjct: 451 LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN 510

Query: 475 NLNGEIPSS 483
            L      +
Sbjct: 511 RLTSSSIEA 519

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  154 bits (390), Expect = 3e-40
 Identities = 84/506 (16%), Positives = 158/506 (31%), Gaps = 81/506 (16%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG- 59
            LF  ++         L   KTL +L L +N ++            L+ LD  NN ++  
Sbjct: 109 HLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYL 168

Query: 60  TVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQK- 118
           +  ++  L     L    +GN +   I P          L              L++   
Sbjct: 169 SKEDMSSLQQATNLSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

Query: 119 ----KLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP-------------- 160
                  + D+    IS  +  G      +   +N+  +  +                  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVES--INLQKHYFFNISSNTFHCFSGLQELDL 285

Query: 161 ---KFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS--KNIEFLKLSKNHF 215
                      L+   +L      LS N              + S   ++  L +  N  
Sbjct: 286 TATHLSELPSGLVGLSTL--KKLVLSANKFENLC------QISASNFPSLTHLSIKGNTK 337

Query: 216 SEDIPDCWM-NWPRLRMLNLGNNNFTGS--LPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272
             ++    + N   LR L+L +++   S    + +  L+ L SLNL  N    +   +F+
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332
               L+ LD+    L         +    L +LNL  +            L +LQ L++ 
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQ 457

Query: 333 YNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILN 392
            N       +  N+                                            L 
Sbjct: 458 GNHFPKGNIQKTNSLQT-----------------------------------------LG 476

Query: 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
            +  + +S  + S       T+L+ +  ++LSHN  T    + +  ++ I  L+ ++N +
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHI 535

Query: 453 SGQIPQSMSNLSFLNYLNLSNNNLNG 478
           S  +P  +  LS    +NL  N L+ 
Sbjct: 536 SIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  148 bits (376), Expect = 2e-38
 Identities = 86/471 (18%), Positives = 157/471 (33%), Gaps = 41/471 (8%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
             +   L+ S N +      +  ++ NL +LDL+  ++     +  F +  +L       
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT-FQSQHRLDTLVLTA 90

Query: 80  NSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
           N L+F +       P  L  L      +     + L +QK L  L + S  IS+      
Sbjct: 91  NPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKG 149

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           + +  +   L+   N I             + +         +L+ N ++G     I  G
Sbjct: 150 FPT-EKLKVLDFQNNAI------HYLSKEDMSSLQQATNLSLNLNGNDIAG-----IEPG 197

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMN--WPRLRMLNLGNNNFTGSLPMSIGAL--NSLM 254
              S   + L          I     N     L +    + +     P     L   S+ 
Sbjct: 198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVE 257

Query: 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG 314
           S+NL+ +    I   +F   S L+ LD+    L   +P+ +    S L  L L +NKF  
Sbjct: 258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHL-SELPSGLVG-LSTLKKLVLSANKFEN 315

Query: 315 DFPIQLCRLGSLQILDVAYNSLSGTI-PRCINNFSAMATTDSSDPNSGIFYASSGDNEIV 373
              I      SL  L +  N+    +   C+ N   +   D S             ++I 
Sbjct: 316 LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLS------------HDDI- 362

Query: 374 EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 433
            +        L      L+ ++S+++S N               L+ L+L+      +  
Sbjct: 363 -ETSDCCNLQL----RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA 417

Query: 434 DNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
            +    +  ++ L+ S + L     Q    L  L +LNL  N+        
Sbjct: 418 QSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQK 468

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  147 bits (374), Expect = 4e-38
 Identities = 82/493 (16%), Positives = 151/493 (30%), Gaps = 44/493 (8%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L    +           R   L  LDL+   +      +      L+ L L+ N L   
Sbjct: 37  CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIF- 95

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           ++E        L         +             L  L L S H+           +KL
Sbjct: 96  MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKL 155

Query: 121 YYLDISSTRISAKIPRGFWN-SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
             LD  +  I         +        LN++GN I           +      S +   
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA---------GIEPGAFDSAVFQS 206

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR--LRMLNLGNN 237
            +         IF  +    +  +++           +  P  +       +  +NL  +
Sbjct: 207 LNFGGTQNLLVIFKGL--KNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKH 264

Query: 238 NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
            F      +    + L  L+L    LS  +P+    LS LK L +  N+   N+      
Sbjct: 265 YFFNISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKF-ENLCQISAS 322

Query: 298 TFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS 356
            F  L  L+++ N    +     L  L +L+ LD++++ +  T   C      +      
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE-TSDCCNLQLRNL------ 375

Query: 357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV--RSIDISKNNFSGEIPVEV-T 413
              S +   +   NE +           ++  +         +D++      +       
Sbjct: 376 ---SHLQSLNLSYNEPLS----------LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQ 422

Query: 414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ---SMSNLSFLNYLN 470
           NL  L+ LNLSH+L           + +++ L+   N       Q   S+  L  L  L 
Sbjct: 423 NLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV 482

Query: 471 LSNNNLNGEIPSS 483
           LS  +L+     +
Sbjct: 483 LSFCDLSSIDQHA 495

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  122 bits (309), Expect = 1e-29
 Identities = 55/329 (16%), Positives = 101/329 (30%), Gaps = 18/329 (5%)

Query: 164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223
           + S         +   ++  N  L+  I            + E L+ S N         +
Sbjct: 1   TTSSDQKCIEKEVNKTYNCENLGLN-EIP------GTLPNSTECLEFSFNVLPTIQNTTF 53

Query: 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
                L  L+L           +  + + L +L L  N L  +  T+      LK L   
Sbjct: 54  SRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
           +  +       +      L  L L SN        +      L++LD   N++       
Sbjct: 114 QTGISSIDFIPLHN-QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172

Query: 344 INNFSA-------MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRS 396
           +++          +   D +    G F ++   +        +   F    NS +  +  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 397 IDISKNNFSGEIPVEVTNLQG--LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
                 +     P     L    ++S+NL  + F     +       ++ LD +A  LS 
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291

Query: 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
           ++P  +  LS L  L LS N        S
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  116 bits (293), Expect = 1e-27
 Identities = 55/309 (17%), Positives = 104/309 (33%), Gaps = 43/309 (13%)

Query: 12  HLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQ 71
            L + L    TL+ L LS N       +S     +L +L +  N     +      NL  
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLEN 351

Query: 72  LLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLG--PRFPLWLQSQKKLYYLDISSTR 129
           L                          L+L    +       L L++   L  L++S   
Sbjct: 352 LRE------------------------LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE 387

Query: 130 ISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG 189
               +    +    Q + L+++  ++     K      P      L   + +LS++ L  
Sbjct: 388 PL-SLKTEAFKECPQLELLDLAFTRL-----KVKDAQSPFQNLHLLK--VLNLSHSLLDI 439

Query: 190 SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW---MNWPRLRMLNLGNNNFTGSLPMS 246
           S   L          ++ L L  NHF +             RL +L L   + +     +
Sbjct: 440 SSEQLFDG----LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHA 495

Query: 247 IGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN 306
             +L  +  ++L +NRL+     +  +L  +  L++  N +   +P+ +    S+   +N
Sbjct: 496 FTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLP-ILSQQRTIN 553

Query: 307 LRSNKFHGD 315
           LR N     
Sbjct: 554 LRQNPLDCT 562

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 86.2 bits (214), Expect = 7e-18
 Identities = 46/285 (16%), Positives = 77/285 (27%), Gaps = 74/285 (25%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           +  N  N      +P ++   NS   L    N L  I  T+F  L  L  LD+   ++  
Sbjct: 15  KTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYW 71

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSA 349
                  +TF                          L  L +  N L       ++    
Sbjct: 72  IHE----DTF---------------------QSQHRLDTLVLTANPLIFMAETALSGPK- 105

Query: 350 MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
                                                      L + +   +   S    
Sbjct: 106 ------------------------------------------AL-KHLFFIQTGISSIDF 122

Query: 410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN-- 467
           + + N + L+SL L  N  +            ++ LDF  N +     + MS+L      
Sbjct: 123 IPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL 182

Query: 468 YLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNI 512
            LNL+ N++ G  P +     F + +F G               I
Sbjct: 183 SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTI 227

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 70.0 bits (172), Expect = 9e-13
 Identities = 47/257 (18%), Positives = 89/257 (34%), Gaps = 21/257 (8%)

Query: 11  GHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
                QL     L++L+LS N        +  +   LE LDL+  +L    ++  F NL 
Sbjct: 366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425

Query: 71  QLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHL---GPRFPLWLQSQKKLYYLDISS 127
            L V     + L       +     L  L L+  H      +    LQ+  +L  L +S 
Sbjct: 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSF 485

Query: 128 TRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNAL 187
             +S+ I +  + S+   +++++S N++          S  +     L G   +L++N +
Sbjct: 486 CDLSS-IDQHAFTSLKMMNHVDLSHNRLT---------SSSIEALSHLKGIYLNLASNHI 535

Query: 188 SGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI 247
           S  +  L+            + L +N       + +     L            +     
Sbjct: 536 SIILPSLL----PILSQQRTINLRQNPLDCTCSNIYF----LEWYKENMQKLEDTEDTLC 587

Query: 248 GALNSLMSLNLRNNRLS 264
                L  + L +  LS
Sbjct: 588 ENPPLLRGVRLSDVTLS 604

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  163 bits (414), Expect = 9e-43
 Identities = 68/532 (12%), Positives = 153/532 (28%), Gaps = 67/532 (12%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
                R  +     +   R      L  + N      P+      +L+   + N     T
Sbjct: 379 RKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
                   LT+L +     +   +                           L   + K L
Sbjct: 439 FISKAIQRLTKLQIIYFANSPFTYDN-----IAVDWEDANSDYAKQYENEELSWSNLKDL 493

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS-- 178
             +++ +     ++P   ++ + +   LN++ N+                       +  
Sbjct: 494 TDVELYNCPNMTQLPDFLYD-LPELQSLNIACNRGISAAQLKAD----WTRLADDEDTGP 548

Query: 179 ---IFDLSNNALSG-----SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLR 230
              IF +  N L       S+  +          +  L    N       + +    +L 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKM--------VKLGLLDCVHNKVRH--LEAFGTNVKLT 598

Query: 231 MLNLGNNNFTGSLPMSIGA-LNSLMSLNLRNNRLSGIIPT-SFRNLSILKALDMGENELV 288
            L L  N     +P    A  + +  L   +N+L  I    + +++ ++ ++D   N++ 
Sbjct: 599 DLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIG 657

Query: 289 GNIPTWIGE----TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCI 344
                               + L  N+              +  + ++ N ++ +IP   
Sbjct: 658 SEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPE-- 714

Query: 345 NNFSAMATTDSSDPNSGIFYASSGDNEIVE--DALLVTKGFLVEYNSILNLVRSIDISKN 402
           N+         +             N++    D    T          L  + ++D+S N
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLR--FNKLTSLSDDFRATT---------LPYLSNMDVSYN 763

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNL------FTGRIPDNIGVMRSIESLDFSANQLSGQI 456
            FS   P +  N   L++  + H           + P  I    S+  L   +N +   +
Sbjct: 764 CFS-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-V 821

Query: 457 PQSMSNLSFLNYLNLSNNNL-NGEIPSSTQLQSFGASSFAGN---DLCGAPL 504
            + +     L  L++++N   + ++ S       G      +   D+ G   
Sbjct: 822 DEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  160 bits (405), Expect = 1e-41
 Identities = 68/523 (13%), Positives = 159/523 (30%), Gaps = 94/523 (17%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L L      G + + +G+   L+ L    ++      L   +    +  +   +++   
Sbjct: 327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMH 386

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRF------PLWL 114
             ++      +L +     +++    NP   P  + + + L+   +G            +
Sbjct: 387 YKKMFLDYDQRLNLSDLLQDAI--NRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 115 QSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174
           Q   KL  +  +++  +       W         N    + Y       S    L     
Sbjct: 445 QRLTKLQIIYFANSPFTYDNIAVDWED------ANSDYAKQYENEELSWSNLKDL----- 493

Query: 175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS---------EDIPDCWMN 225
              +  +L N      +   +         ++ L ++ N              + D    
Sbjct: 494 ---TDVELYNCPNMTQLPDFLYD----LPELQSLNIACNRGISAAQLKADWTRLADDEDT 546

Query: 226 WPRLRMLNLGNNNFTG-SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
            P++++  +G NN        S+  +  L  L+  +N++  +   +F     L  L +  
Sbjct: 547 GPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL--EAFGTNVKLTDLKLDY 604

Query: 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFP--IQLCRLGSLQILDVAYNSLSGTIPR 342
           N++   IP        ++  L    NK     P       +  +  +D +YN +      
Sbjct: 605 NQIE-EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 343 CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN 402
              +                                            +N   ++ +S N
Sbjct: 663 ISCSMDDY--------------------------------------KGINA-STVTLSYN 683

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNLFT-------GRIPDNIGVMRSIESLDFSANQLSGQ 455
                          + ++ LS+NL T            N      + ++D   N+L+  
Sbjct: 684 EIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS- 742

Query: 456 IPQSM--SNLSFLNYLNLSNNNLNG---EIPSSTQLQSFGASS 493
           +      + L +L+ +++S N  +    +  +S+QL++FG   
Sbjct: 743 LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  155 bits (392), Expect = 7e-40
 Identities = 74/486 (15%), Positives = 130/486 (26%), Gaps = 106/486 (21%)

Query: 16  QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            L     +  L L+     G +P ++GQ+  L+ L    +    +        LT  +  
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM-- 375

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
                                        H    F  + Q       L  +  R     P
Sbjct: 376 -------------------SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKP 416

Query: 136 RGFWNSIFQYD-YLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHL 194
               + I   D  +    N+I   + K       +     L   I   +N+  +     +
Sbjct: 417 IKKDSRISLKDTQIGNLTNRI-TFISKA------IQRLTKL--QIIYFANSPFTYDNIAV 467

Query: 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254
                      E          E+    W N   L  + L N      LP  +  L  L 
Sbjct: 468 DW---------EDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 255 SLNLRNNRLSGI---------IPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL 305
           SLN+  NR             +         ++   MG N L     +   +   +L +L
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLL 578

Query: 306 NLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA 365
           +   NK              L  L + YN +   IP                        
Sbjct: 579 DCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE-EIP------------------EDFC-- 615

Query: 366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP--VEVTNLQGLQSLNL 423
                                  +  + V  +  S N     IP      ++  + S++ 
Sbjct: 616 -----------------------AFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDF 651

Query: 424 SHNLFTGRIPDNIGV------MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           S+N        NI          +  ++  S N++     +  +  S ++ + LSNN + 
Sbjct: 652 SYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM- 709

Query: 478 GEIPSS 483
             IP +
Sbjct: 710 TSIPEN 715

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  108 bits (270), Expect = 1e-24
 Identities = 35/300 (11%), Positives = 86/300 (28%), Gaps = 38/300 (12%)

Query: 208 LKLSKNHFSEDIPDCW---MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS 264
           L      +     +     +NW      N   + +     + +     +  L+L      
Sbjct: 281 LDGKNWRYYSGTINNTIHSLNWN----FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 265 GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG 324
           G +P +   L+ LK L  G +    +   +  E  +  M    +         + L    
Sbjct: 337 GRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ 396

Query: 325 SLQILDVAYNSLSG---TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
            L + D+  ++++      P   ++  ++  T   +  + I + S               
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK-------------- 442

Query: 382 GFLVEYNSILNLV--RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 439
                  +I  L   + I  + + F+ +           +  N  +         +   +
Sbjct: 443 -------AIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNL 490

Query: 440 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDL 499
           + +  ++        Q+P  + +L  L  LN++ N                     G  +
Sbjct: 491 KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKI 550

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  103 bits (258), Expect = 4e-23
 Identities = 47/311 (15%), Positives = 88/311 (28%), Gaps = 37/311 (11%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            G    L  L L  N +   IP         +E L  S+NKL    +  +  ++  +   
Sbjct: 591 FGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSV 649

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
               N +                ++                      + +S   I  K P
Sbjct: 650 DFSYNKI------GSEGRNISCSMDDYKG-------------INASTVTLSYNEIQ-KFP 689

Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLI 195
              + +      + +S N +         P         LL +  DL  N L+       
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLL-TTIDLRFNKLTSLSDDFR 748

Query: 196 CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL------GNNNFTGSLPMSIGA 249
                    +  + +S N FS   P   +N  +L+   +        N      P  I  
Sbjct: 749 ATT---LPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITT 804

Query: 250 LNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL-VGNIPTWIGETFSRLMILNLR 308
             SL+ L + +N +  +       L I   LD+ +N     ++ +      + + +L   
Sbjct: 805 CPSLIQLQIGSNDIRKVDEKLTPQLYI---LDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

Query: 309 SNKFHGDFPIQ 319
             +        
Sbjct: 862 KTQDIRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 80.3 bits (198), Expect = 8e-16
 Identities = 37/267 (13%), Positives = 81/267 (30%), Gaps = 37/267 (13%)

Query: 16  QLGRFKTLRALDLSNN-----TVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT 70
                  + ++D S N       N    +   +  N   + LS N++    +E+ F   +
Sbjct: 639 NAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTEL-FATGS 697

Query: 71  QLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI 130
            +       N +   I  N + P    +                     L  +D+   ++
Sbjct: 698 PISTIILSNNLMT-SIPENSLKPKDGNYKNTYL----------------LTTIDLRFNKL 740

Query: 131 SAKIPRGFWNSIFQY-DYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG 189
           +  +   F  +   Y   ++VS N      P     S  L      +    D   N +  
Sbjct: 741 T-SLSDDFRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFG--IRHQRDAEGNRILR 796

Query: 190 SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL-GNNNFTGSLPMSIG 248
                I        ++  L++  N   + + +     P+L +L++  N N +  +     
Sbjct: 797 QWPTGITT----CPSLIQLQIGSNDIRK-VDEKLT--PQLYILDIADNPNISIDVTSVCP 849

Query: 249 ALNSLMSLNLRNNRLSGIIPTSFRNLS 275
            + + M   L  ++   I       + 
Sbjct: 850 YIEAGM-YVLLYDKTQDIRGCDALGIE 875

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  149 bits (377), Expect = 2e-38
 Identities = 71/511 (13%), Positives = 143/511 (27%), Gaps = 82/511 (16%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
           +L L  +              +L  L      +       +GQ+  L+ L++++N ++  
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSC 143

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQ-----LAFLELRSCHLGPRFPLWLQ 115
               +F NLT L+      N +   I  N +   +        L++    +         
Sbjct: 144 KLPAYFSNLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAF 201

Query: 116 SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSL 175
              KL+ L +     S+ I +    ++       +   +              +     +
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 176 LGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLG 235
               F L+      + F       +   N+  + L+         +      + + L++ 
Sbjct: 262 TIDEFRLTYT----NDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSII 315

Query: 236 NNNFT-------------------GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSI 276
                                   GS+     AL SL  L+L  N LS     S+ +L  
Sbjct: 316 RCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGT 375

Query: 277 --LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAY 333
             L+ LD+  N  +  +          L  L+ + +             L  L  LD++Y
Sbjct: 376 NSLRHLDLSFNGAII-MSANFMG-LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISY 433

Query: 334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNL 393
            +            +                                           +L
Sbjct: 434 TNTKIDFDGIFLGLT-------------------------------------------SL 450

Query: 394 VRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
             ++ ++ N+F       V  N   L  L+LS              +  ++ L+ S N L
Sbjct: 451 -NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509

Query: 453 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
                   + L  L+ L+ S N +       
Sbjct: 510 LFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  136 bits (344), Expect = 4e-34
 Identities = 83/459 (18%), Positives = 134/459 (29%), Gaps = 83/459 (18%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
           +   +LD+S N ++  I     Q   L  L L  N  +  + +    NL  L V R    
Sbjct: 181 QVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILG 239

Query: 81  SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
              FK   N           L    +                  ++ T   +     F  
Sbjct: 240 E--FKDERNLEIFEPSIMEGLCDVTID--------------EFRLTYTNDFSDDIVKFHC 283

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
                  ++++G  I             +            +    L             
Sbjct: 284 LANVS-AMSLAGVSI--------KYLEDVPKHFKW--QSLSIIRCQLKQFPT-------L 325

Query: 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT--GSLPMSIGALNSLMSLNL 258
               ++ L L+ N  S  I    +  P L  L+L  N  +  G    S    NSL  L+L
Sbjct: 326 DLPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDL 383

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318
             N    I+  +F  L  L+ LD   + L          +  +L+ L++       DF  
Sbjct: 384 SFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442

Query: 319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
               L SL  L +A NS                        S +F               
Sbjct: 443 IFLGLTSLNTLKMAGNSFKDNTL------------------SNVF--------------- 469

Query: 379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 438
                     +    +  +D+SK             L  LQ LN+SHN        +   
Sbjct: 470 ----------ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQ 519

Query: 439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           + S+ +LD S N++             L + NL+NN++ 
Sbjct: 520 LYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  122 bits (307), Expect = 2e-29
 Identities = 76/477 (15%), Positives = 137/477 (28%), Gaps = 77/477 (16%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
             + + +DLS N +      S    + L++LDLS  ++   + +  +  L  L      G
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET-IEDKAWHGLHHLSNLILTG 89

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N +    +P                               L  L    T+++  +     
Sbjct: 90  NPIQS-FSPG-----------------------SFSGLTSLENLVAVETKLA-SLESFPI 124

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS--IFDLSNNALSGSIFHLICQ 197
             +     LNV+ N I+         S  L    S L +    DLS N +     + +  
Sbjct: 125 GQLITLKKLNVAHNFIH---------SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF 175

Query: 198 GENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP-MSIGALNSLMSL 256
                +    L +S N     I D      +L  L L  N  + ++    +  L  L   
Sbjct: 176 LRENPQVNLSLDMSLNPIDF-IQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 257 NLRNNRLSGIIPTSFRNLSI---LKALDMGENELVGNIPTWIGET----FSRLMILNLRS 309
            L                SI   L  + + E  L                + +  ++L  
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 310 NKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD 369
                     + +    Q L +    L         +   + +   +     I +     
Sbjct: 295 VSIKYLED--VPKHFKWQSLSIIRCQLKQFPT---LDLPFLKSLTLTMNKGSISFKKVA- 348

Query: 370 NEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS--GEIPVEVTNLQGLQSLNLSHNL 427
                                L  +  +D+S+N  S  G           L+ L+LS N 
Sbjct: 349 ---------------------LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG 387

Query: 428 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSS 483
               +  N   +  ++ LDF  + L      S   +L  L YL++S  N   +    
Sbjct: 388 AII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI 443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  118 bits (297), Expect = 4e-28
 Identities = 55/345 (15%), Positives = 105/345 (30%), Gaps = 36/345 (10%)

Query: 174 SLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLN 233
            +    +   +  LS  +       ++   + + + LS N         + N+  L+ L+
Sbjct: 10  VVPNITYQCMDQKLS-KVP------DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLD 62

Query: 234 LGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT 293
           L           +   L+ L +L L  N +    P SF  L+ L+ L   E +L      
Sbjct: 63  LSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF 122

Query: 294 WIGETFSRLMILNLRSNKFHG-DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT 352
            IG+    L  LN+  N  H    P     L +L  +D++YN +       +        
Sbjct: 123 PIGQ-LITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLREN-- 179

Query: 353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV 412
                            N I        +G        + L   + +  N  S  I    
Sbjct: 180 ------PQVNLSLDMSLNPIDFIQDQAFQG--------IKL-HELTLRGNFNSSNIMKTC 224

Query: 413 -TNLQGLQSLNLSHNLFTGRI------PDNIGVMR--SIESLDFSANQLSGQIPQSMSNL 463
             NL GL    L    F          P  +  +   +I+    +              L
Sbjct: 225 LQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCL 284

Query: 464 SFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCT 508
           + ++ ++L+  ++   +    +   + + S     L   P  +  
Sbjct: 285 ANVSAMSLAGVSIK-YLEDVPKHFKWQSLSIIRCQLKQFPTLDLP 328

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (265), Expect = 4e-24
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 39/269 (14%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEI-HFLNLTQLLVFRAH 78
              L++L L+ N   G I      + +L YLDLS N L+ +       L    L      
Sbjct: 327 LPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLS 384

Query: 79  GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
            N  +                                  ++L +LD   + +        
Sbjct: 385 FNGAII-------------------------MSANFMGLEELQHLDFQHSTLKRVTEFSA 419

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           + S+ +  YL++S                  +   SL  +   ++ N+   +    +   
Sbjct: 420 FLSLEKLLYLDISYTNTKI------DFDGIFLGLTSL--NTLKMAGNSFKDNTLSNVFAN 471

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                N+ FL LSK    +     +    RL++LN+ +NN           L SL +L+ 
Sbjct: 472 T---TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDC 528

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENEL 287
             NR+             L   ++  N +
Sbjct: 529 SFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  134 bits (340), Expect = 3e-33
 Identities = 96/489 (19%), Positives = 173/489 (35%), Gaps = 53/489 (10%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
           T   L LS N +      S   +  L+ L+L +     T+ +  F NL  L +     + 
Sbjct: 25  TTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84

Query: 82  LVFKINPNW-VPPFQLAFLELRSCHLGPRF--PLWLQSQKKLYYLDISSTRISAKIPRGF 138
           + F ++P+     F L  L L  C L        + ++ K L  LD+S  +I +      
Sbjct: 85  IYF-LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPS 143

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           +  +     ++ S NQI+          +  +   +L    F L+ N+L   +     + 
Sbjct: 144 FGKLNSLKSIDFSSNQIF----LVCEHELEPLQGKTLS--FFSLAANSLYSRVSVDWGKC 197

Query: 199 ENFSKNI--EFLKLSKNHFSEDIPDC------------WMNWPRLRMLNLGNNNFTGSLP 244
            N  +N+  E L +S N ++ DI                +    +     G +N      
Sbjct: 198 MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257

Query: 245 MSIGAL--NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRL 302
            +   L  +S+  L+L +  +  +    F  L  LK L++  N++   I          L
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN-KIADEAFYGLDNL 316

Query: 303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362
            +LNL  N     +      L  +  +D+  N ++    +       + T D        
Sbjct: 317 QVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR------ 370

Query: 363 FYASSGDNEIVEDALLVTKGFL-VEYNSILNLV------RSIDISKNNFSG-EIPVEVTN 414
                 DN +     + +   + +  N ++ L         I +S+N     +I   +  
Sbjct: 371 ------DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLR 424

Query: 415 LQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSM-----SNLSFLNY 468
           +  LQ L L+ N F+    D       S+E L    N L       +       LS L  
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 469 LNLSNNNLN 477
           L L++N LN
Sbjct: 485 LYLNHNYLN 493

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  116 bits (292), Expect = 2e-27
 Identities = 104/591 (17%), Positives = 205/591 (34%), Gaps = 80/591 (13%)

Query: 21  KTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQ--LLVFRA 77
           K L  LDLS N +    +  S G++ +L+ +D S+N++   V E     L    L  F  
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSL 181

Query: 78  HGNSLVFKINPNWVPPFQ-LAFLELRSCHLGPRF-----------------PLWLQSQKK 119
             NSL  +++ +W         + L    +                        L     
Sbjct: 182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241

Query: 120 LYYLDISS---TRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
           +                   G   S  ++  L++S   +      F   S    T   L 
Sbjct: 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRH--LDLSHGFV------FSLNSRVFETLKDL- 292

Query: 177 GSIFDLSNNALS---GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLN 233
             + +L+ N ++      F+ +        N++ L LS N   E     +   P++  ++
Sbjct: 293 -KVLNLAYNKINKIADEAFYGL-------DNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 234 LGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT 293
           L  N+       +   L  L +L+LR+N L     T+   +  +  + +  N+L      
Sbjct: 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKL-----V 394

Query: 294 WIGETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT 352
            + +      +++L  N+      +  L R+  LQIL +  N  S        +      
Sbjct: 395 TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPS------ 448

Query: 353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV 412
                 N  +     G+N +    L        +    L+ ++ + ++ N  +  +P  V
Sbjct: 449 -----ENPSLEQLFLGENML---QLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGV 499

Query: 413 -TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 471
            ++L  L+ L+L+ N  T  +  N  +  ++E LD S NQL    P    +LS    L++
Sbjct: 500 FSHLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFVSLS---VLDI 554

Query: 472 SNNNLNGEIPSST--QLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDED 529
           ++N    E   ST     +    + AG       +   +   + +        +E++   
Sbjct: 555 THNKFICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVLK 614

Query: 530 GVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHFLDRLWDGCFVRKC 580
            + + L+I   +  +  F   I  +   R + +       RL      +  
Sbjct: 615 SLKFSLFIVCTV-TLTLFLMTILTVTKFRGFCFICYKTAQRLVFKDHPQGT 664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 79.5 bits (196), Expect = 1e-15
 Identities = 48/284 (16%), Positives = 84/284 (29%), Gaps = 37/284 (13%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGII-PTSFRNLSILKALDMGEN 285
                L L  N        S   L  L  L L +      I   +FRNL  L+ LD+G +
Sbjct: 24  NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS 83

Query: 286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGTIPRC 343
           ++   +     +    L  L L                 L +L  LD++ N +       
Sbjct: 84  KIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHP 142

Query: 344 I--------------NNFSAMATTD-SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388
                          N    +   +        + + S   N +      V+  +    N
Sbjct: 143 SFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYS---RVSVDWGKCMN 199

Query: 389 SILNLV-RSIDISKNNFSGEIPVEVTN------------LQGLQSLNLSHNLFTGRIPDN 435
              N+V   +D+S N ++ +I    +N               +       +       + 
Sbjct: 200 PFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNT 259

Query: 436 IGVMR--SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
              +   S+  LD S   +     +    L  L  LNL+ N +N
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN 303

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 33/276 (11%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           R+      N T  +P     LN+   L L  N +  +  +SF  L  L+ L++G      
Sbjct: 7   RIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL 62

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCI----- 344
            I          L IL+L S+K +   P     L  L  L + +  LS  + +       
Sbjct: 63  TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNL 122

Query: 345 ----------NNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLV 394
                     N   ++    S    + +       N+I        +    +  S  +L 
Sbjct: 123 KALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLA 182

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN------------IGVMRSI 442
            +   S+ +      +       L+ L++S N +T  I  N            + +   I
Sbjct: 183 ANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHI 242

Query: 443 ESLDFSANQLSGQIPQSMSNL--SFLNYLNLSNNNL 476
               F  + +      + + L  S + +L+LS+  +
Sbjct: 243 MGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFV 278

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 51.0 bits (122), Expect = 9e-07
 Identities = 18/101 (17%), Positives = 34/101 (33%), Gaps = 1/101 (0%)

Query: 389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDF 447
            +LN    + +S N            L+ LQ L L        I       + ++  LD 
Sbjct: 21  QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 448 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
            ++++    P +   L  L  L L    L+  +      ++
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRN 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  117 bits (296), Expect = 4e-28
 Identities = 75/464 (16%), Positives = 138/464 (29%), Gaps = 69/464 (14%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
           L+ L      +       +G +  L+ L++++N +       +F NLT L       N +
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 83  ------VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
                   ++      P     L+L    +          + +L+ L + +   S  + +
Sbjct: 162 QSIYCTDLRVLHQM--PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMK 218

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLIC 196
                +   +   +   +              L    +L    F L+           + 
Sbjct: 219 TCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 197 QGENFSKNIEFLKLSKNHFSEDIPD--CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254
                  N+    L        + D      W  L ++N     F          L SL 
Sbjct: 279 NCLT---NVSSFSLVSVTIER-VKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLK 328

Query: 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENEL-VGNIPTWIGETFSRLMILNLRSNKFH 313
            L   +N+       S  +L  L+ LD+  N L      +      + L  L+L  N   
Sbjct: 329 RLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 314 GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIV 373
                    L  L+ LD  +++L                         +F          
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSNLKQM------------------SEFSVF---------- 417

Query: 374 EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP 433
                            L  +  +DIS  +           L  L+ L ++ N F     
Sbjct: 418 ---------------LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 434 DNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            +I   +R++  LD S  QL    P + ++LS L  LN+++N L
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQL 506

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  111 bits (279), Expect = 6e-26
 Identities = 81/486 (16%), Positives = 152/486 (31%), Gaps = 58/486 (11%)

Query: 15  NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLV 74
                F  L+ LDLS   +      +   +++L  L L+ N +  +++   F  L+ L  
Sbjct: 46  YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQK 104

Query: 75  FRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISS---TRI 130
             A   +L    N        L  L +    +   + P +  +   L +LD+SS     I
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164

Query: 131 SAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGS 190
                R           L++S N +           +       +      L NN  S +
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMN---------FIQPGAFKEIRLHKLTLRNNFDSLN 215

Query: 191 IFHLICQGENFSKNIEFLKLSKNHFSEDI------PDCWMNWPRLRMLNL---GNNNFTG 241
           +     QG      +E  +L    F  +                L +        + +  
Sbjct: 216 VMKTCIQG---LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLD 272

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSF-RNLSILKALDMGENELVGNIPTWIGETFS 300
            +      L ++ S +L +  +  +   S+      L+ ++    +              
Sbjct: 273 DIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK-------LK 325

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360
            L  L   SNK    F      L SL+ LD++ N LS     C  +     +    D   
Sbjct: 326 SLKRLTFTSNKGGNAFSEV--DLPSLEFLDLSRNGLS-FKGCCSQSDFGTTSLKYLD--- 379

Query: 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQ 419
                    N ++     ++  F       L  +  +D   +N        V  +L+ L 
Sbjct: 380 ------LSFNGVIT----MSSNF-----LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 424

Query: 420 SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNG 478
            L++SH             + S+E L  + N         + + L  L +L+LS   L  
Sbjct: 425 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE- 483

Query: 479 EIPSST 484
           ++  + 
Sbjct: 484 QLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  101 bits (254), Expect = 7e-23
 Identities = 66/334 (19%), Positives = 108/334 (32%), Gaps = 30/334 (8%)

Query: 26  LDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK 85
           LDLS N +N  I     +   L  L L NN  +  V +     L  L V R       F+
Sbjct: 182 LDLSLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE--FR 238

Query: 86  INPNWVPPFQLAFLELRSCHL-----------GPRFPLWLQSQKKLYYLDISSTRISAKI 134
              N     + A   L +  +                        +    + S  I    
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 135 PRGFWNSIFQYDYLNVSGNQI----YGGVPKFDSPSVPLITTPSLLG----SIFDLSNNA 186
              +       + +N    Q        + +    S       S +        DLS N 
Sbjct: 299 DFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 187 LSGSIFHLICQGENFSK--NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP 244
           LS       C  ++     ++++L LS N     +   ++   +L  L+  ++N      
Sbjct: 359 LS----FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 245 MSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303
            S+  +L +L+ L++ +          F  LS L+ L M  N    N    I      L 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
            L+L   +     P     L SLQ+L++A N L 
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.3 bits (214), Expect = 7e-18
 Identities = 51/324 (15%), Positives = 103/324 (31%), Gaps = 31/324 (9%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
           +N   + + L LS N         + ++P L++L+L           +  +L+ L +L L
Sbjct: 24  DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLIL 83

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF-HGDFP 317
             N +  +   +F  LS L+ L   E  L  ++  +       L  LN+  N       P
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLP 142

Query: 318 IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDAL 377
                L +L+ LD++ N +       +     M   + S   S         N +     
Sbjct: 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL--------NPMNFIQP 194

Query: 378 LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTG--RIPD 434
              K         + L   + +  N  S  +       L GL+   L    F     +  
Sbjct: 195 GAFKE--------IRL-HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEK 245

Query: 435 -NIGVMRSIESLDFSANQLSG------QIPQSMSNLSFLNYLNLSNNNLNG--EIPSSTQ 485
            +   +  + +L     +L+        I    + L+ ++  +L +  +    +   +  
Sbjct: 246 FDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFG 305

Query: 486 LQSFGASSFAGNDLCGAPLSNCTE 509
            Q     +          L +   
Sbjct: 306 WQHLELVNCKFGQFPTLKLKSLKR 329

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 50/297 (16%), Positives = 94/297 (31%), Gaps = 38/297 (12%)

Query: 14  TNQLGRFKTLRALDLSNNTVNG------PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL 67
                  + L  L +    +         I      + N+    L +  +       +  
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF 304

Query: 68  NLTQLLVFRAHGNSLVF------------KINPNWVPPF----QLAFLELRSCHLG--PR 109
               L +                                     L FL+L    L     
Sbjct: 305 GWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 110 FPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPL 169
                     L YLD+S   +   +   F     Q ++L+   + +     K  S     
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLE-QLEHLDFQHSNL-----KQMSEFSVF 417

Query: 170 ITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDI-PDCWMNWPR 228
           ++  +L+    D+S+       F+ I  G +   ++E LK++ N F E+  PD +     
Sbjct: 418 LSLRNLI--YLDISHTHTR-VAFNGIFNGLS---SLEVLKMAGNSFQENFLPDIFTELRN 471

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
           L  L+L         P +  +L+SL  LN+ +N+L  +    F  L+ L+ + +  N
Sbjct: 472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  112 bits (283), Expect = 2e-26
 Identities = 79/461 (17%), Positives = 141/461 (30%), Gaps = 56/461 (12%)

Query: 23  LRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
           L+ L+L  N      +      + NL+ L + N +    +  I F  LT L        S
Sbjct: 100 LKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS 159

Query: 82  LVFKINPNWVPPFQ-LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
           L        +   + +  L L          ++      + YL++  T ++      F  
Sbjct: 160 LR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA-----RFQF 213

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
           S    D ++    ++          S   +    LL  I +LS              G  
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNEL--LKLLRYILELSEV----EFDDCTLNGLG 267

Query: 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
                E   +S+           +    +R L++        L      L  +  + + N
Sbjct: 268 DFNPSESDVVSELGK--------VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG--ETFSRLMILNLRSNKFH--GDF 316
           +++  +  +  ++L  L+ LD+ EN +V            +  L  L L  N        
Sbjct: 320 SKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKT 379

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376
              L  L +L  LD++ N+    +P        M   + S               I    
Sbjct: 380 GEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS------------STGIRVVK 426

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436
                        I   +  +D+S NN      +    L  LQ L +S N     +PD  
Sbjct: 427 -----------TCIPQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNKLK-TLPDA- 469

Query: 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
            +   +  +  S NQL          L+ L  + L  N  +
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  109 bits (273), Expect = 3e-25
 Identities = 76/485 (15%), Positives = 152/485 (31%), Gaps = 69/485 (14%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           L     L+ L L ++ +N     +   + +LE+LDLS+N L+ ++S   F  L+ L    
Sbjct: 46  LRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN 104

Query: 77  AHGNSL-VFKINPNWVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKI 134
             GN      +   +     L  L + +         +       L  L+I +  +    
Sbjct: 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NY 163

Query: 135 PRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHL 194
                 SI    +L +  ++    +  F      +        ++     + L       
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223

Query: 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALN--- 251
             +   F +       S N     +    +    +   +   N      P     ++   
Sbjct: 224 PMKKLAF-RGSVLTDESFNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELG 281

Query: 252 -----SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN 306
                ++  L++    L   + T +  L  +K + +  +++   +P    +    L  L+
Sbjct: 282 KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKV-FLVPCSFSQHLKSLEFLD 340

Query: 307 LRSNKFHGDFPIQ---LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF 363
           L  N    ++           SLQ L ++ N L  ++ +       +             
Sbjct: 341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGEILLTL------------- 386

Query: 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423
                                       NL  S+DIS+N F   +P      + ++ LNL
Sbjct: 387 ---------------------------KNL-TSLDISRNTFH-PMPDSCQWPEKMRFLNL 417

Query: 424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
           S       +     + +++E LD S N L          L  L  L +S N L   +P +
Sbjct: 418 SSTGIR-VVKT--CIPQTLEVLDVSNNNLD-SFS---LFLPRLQELYISRNKLK-TLPDA 469

Query: 484 TQLQS 488
           +    
Sbjct: 470 SLFPV 474

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 99.4 bits (248), Expect = 4e-22
 Identities = 73/389 (18%), Positives = 137/389 (35%), Gaps = 47/389 (12%)

Query: 120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
           +  LD+S  +I+  I  G   +      L +  ++I               +  SL    
Sbjct: 28  MKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN------TIEGDAFYSLGSL--EH 78

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-DIPDCWMNWPRLRMLNLGNNN 238
            DLS+N LS     L         ++++L L  N +    +   + N   L+ L +GN  
Sbjct: 79  LDLSDNHLS----SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134

Query: 239 FTGSLP-MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
               +  +    L SL  L ++   L      S +++  +  L +  +E    +     +
Sbjct: 135 TFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES-AFLLEIFAD 193

Query: 298 TFSRLMILNLRSNKFHG-----------DFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
             S +  L LR                   P++        + D ++N L   + R I  
Sbjct: 194 ILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL-KLLRYILE 252

Query: 347 FSAMATTDSSDPNSGIFYASSGD--NEIVEDALLVTKGFLVEYNSI----------LNLV 394
            S +   D +    G F  S  D  +E+ +   +  +   +    +          L  V
Sbjct: 253 LSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKV 312

Query: 395 RSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDN---IGVMRSIESLDFSAN 450
           + I +  +     +P     +L+ L+ L+LS NL       N    G   S+++L  S N
Sbjct: 313 KRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371

Query: 451 QLS--GQIPQSMSNLSFLNYLNLSNNNLN 477
            L    +  + +  L  L  L++S N  +
Sbjct: 372 HLRSMQKTGEILLTLKNLTSLDISRNTFH 400

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 71/485 (14%), Positives = 142/485 (29%), Gaps = 113/485 (23%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
              +++LDLS N +       L   ANL+ L L ++++N T+    F +L  L       
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSD 83

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N L   ++ +                       W      L YL++             +
Sbjct: 84  NHLS-SLSSS-----------------------WFGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS----GSIFHLI 195
            ++     L +   + +  + + D          SL  +  ++   +L      S+  + 
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRID-----FAGLTSL--NELEIKALSLRNYQSQSLKSI- 171

Query: 196 CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMS 255
                  ++I  L L  +  +  +         +R L L + N        +        
Sbjct: 172 -------RDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 256 LNLRNNRLSGIIPTSFRNLSILKALDMGENEL---------VGNIPTWIGETFSR----- 301
           +     R S +   SF  L  L    +  +E+         +G+      +  S      
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 302 ---LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP 358
              +  L++       D       L  ++ + V  + +   +P                 
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVP----------------- 326

Query: 359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI---PVEVTNL 415
                                           L  +  +D+S+N    E           
Sbjct: 327 -CSFS-------------------------QHLKSLEFLDLSENLMVEEYLKNSACKGAW 360

Query: 416 QGLQSLNLSHNLFTGRIPDNIGV---MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472
             LQ+L LS N     +     +   ++++ SLD S N     +P S      + +LNLS
Sbjct: 361 PSLQTLVLSQNHLR-SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLS 418

Query: 473 NNNLN 477
           +  + 
Sbjct: 419 STGIR 423

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.7 bits (228), Expect = 1e-19
 Identities = 62/363 (17%), Positives = 119/363 (32%), Gaps = 36/363 (9%)

Query: 166 SVPLITTPSLLGSIFDLSNNALS----GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPD 221
           S+P   T ++     DLS N ++    G +            N++ L L  +  +    D
Sbjct: 19  SIPSGLTAAM--KSLDLSFNKITYIGHGDLRAC--------ANLQVLILKSSRINTIEGD 68

Query: 222 CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI-IPTSFRNLSILKAL 280
            + +   L  L+L +N+ +       G L+SL  LNL  N    + + + F NL+ L+ L
Sbjct: 69  AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128

Query: 281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTI 340
            +G  E    I        + L  L +++          L  +  +  L +  +  +  +
Sbjct: 129 RIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL 188

Query: 341 PRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDIS 400
               +  S++   +  D N                 L V +                D S
Sbjct: 189 EIFADILSSVRYLELRDTNL---------ARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 401 KNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR--------SIESLDFSANQL 452
            N    ++   +  L  ++  + + N      P    V+         +I  L      L
Sbjct: 240 FNELL-KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL 298

Query: 453 SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST--QLQSFGASSFAGNDLCGAPLSNCTEK 510
              +    S L  +  + + N+ +   +P S    L+S      + N +    L N   K
Sbjct: 299 FYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 511 NIL 513
              
Sbjct: 358 GAW 360

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 49/359 (13%), Positives = 111/359 (30%), Gaps = 62/359 (17%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           D  + + + SI          +  ++ L LS N  +            L++L L ++   
Sbjct: 11  DGRSRSFT-SIP------SGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN 63

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG----------- 289
                +  +L SL  L+L +N LS +  + F  LS LK L++  N               
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 290 --------------NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335
                          I        + L  L +++          L  +  +  L +  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 336 LSGTIPRCINNFSAMATTDSSD-------------------------PNSGIFYASSGDN 370
            +  +    +  S++   +  D                           S +   S  + 
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

Query: 371 EIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 430
             +   +L       +  ++  L        +  S    VE   ++    L++       
Sbjct: 244 LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR---LHIPQFYLFY 300

Query: 431 RIPDNIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
            +     ++  ++ +    +++   +P S   +L  L +L+LS N +  E   ++  + 
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKG 358

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 4e-18
 Identities = 65/378 (17%), Positives = 129/378 (34%), Gaps = 64/378 (16%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKL---- 57
           L ++      + +  L   + +  L L  +     + +    ++++ YL+L +  L    
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 58  -------------------NGTVSEIHFLNLTQLLVFRAHGNSLVF---------KINPN 89
                                 +++  F  L +LL +    + + F           NP+
Sbjct: 213 FSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPS 272

Query: 90  WVPPFQ---------LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
                          +  L +   +L           +K+  + + ++++   +P  F  
Sbjct: 273 ESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ 331

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
            +   ++L++S N +     K    S      PSL      LS N L      +   GE 
Sbjct: 332 HLKSLEFLDLSENLMVEEYLK---NSACKGAWPSL--QTLVLSQNHLR----SMQKTGEI 382

Query: 201 FSK--NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                N+  L +S+N F   +PD      ++R LNL +      +        +L  L++
Sbjct: 383 LLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-VVKT--CIPQTLEVLDV 438

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318
            NN L          L  L+ L +  N+L   +P      F  L+++ +  N+       
Sbjct: 439 SNNNLDSF----SLFLPRLQELYISRNKLK-TLPD--ASLFPVLLVMKISRNQLKSVPDG 491

Query: 319 QLCRLGSLQILDVAYNSL 336
              RL SLQ + +  N  
Sbjct: 492 IFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.0 bits (130), Expect = 9e-08
 Identities = 46/249 (18%), Positives = 76/249 (30%), Gaps = 51/249 (20%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNN---TVNGPIPLSLGQIANLEYLDLSNNKL 57
            + +  S+ +    +     K+L  LDLS N             G   +L+ L LS N L
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL 373

Query: 58  NGTVSEIH-FLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQS 116
                     L L  L       N+                        +        Q 
Sbjct: 374 RSMQKTGEILLTLKNLTSLDISRNTF---------------------HPMPDSC----QW 408

Query: 117 QKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL 176
            +K+ +L++SST I   +      ++     L+VS N +          S  L   P L 
Sbjct: 409 PEKMRFLNLSSTGIR-VVKTCIPQTLE---VLDVSNNNL---------DSFSLF-LPRL- 453

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
                +S N L      L     +    +  +K+S+N         +     L+ + L  
Sbjct: 454 -QELYISRNKLK----TL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 237 NNFTGSLPM 245
           N +  S P 
Sbjct: 507 NPWDCSCPR 515

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  108 bits (273), Expect = 2e-26
 Identities = 44/295 (14%), Positives = 84/295 (28%), Gaps = 64/295 (21%)

Query: 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
                 L+L      +  PD       L+ + +        LP ++     L +L L  N
Sbjct: 80  QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARN 137

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF--------SRLMILNLRSNKFH 313
            L   +P S  +L+ L+ L +     +  +P  +  T           L  L L      
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR 196

Query: 314 GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIV 373
              P  +  L +L+ L +  + LS  +                                 
Sbjct: 197 -SLPASIANLQNLKSLKIRNSPLS-ALG-------------------------------- 222

Query: 374 EDALLVTKGFLVEYNSILNLV--RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR 431
                          +I +L     +D+         P        L+ L L        
Sbjct: 223 --------------PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT 268

Query: 432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN---NLNGEIPSS 483
           +P +I  +  +E LD        ++P  ++ L     + +  +    L+   P +
Sbjct: 269 LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  105 bits (264), Expect = 5e-25
 Identities = 43/283 (15%), Positives = 88/283 (31%), Gaps = 48/283 (16%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS--LMSLNLRN 260
           +       ++ H +        N    ++          +    +        ++L LR+
Sbjct: 36  QRHYNADRNRWHSAWRQA----NSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRS 90

Query: 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL 320
             L    P     LS L+ + +    L+  +P  + + F+ L  L L  N      P  +
Sbjct: 91  VPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQ-FAGLETLTLARNPLR-ALPASI 146

Query: 321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT 380
             L  L+ L +        +P  + +  A                               
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDA------------------------------- 175

Query: 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440
                E+  ++NL +S+ +        +P  + NLQ L+SL + ++  +  +   I  + 
Sbjct: 176 ---SGEHQGLVNL-QSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLP 229

Query: 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
            +E LD          P      + L  L L + +    +P  
Sbjct: 230 KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD 272

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 2e-19
 Identities = 57/333 (17%), Positives = 110/333 (33%), Gaps = 46/333 (13%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
                L    +T   P    L      +    ++     +       N  Q+      G 
Sbjct: 12  SGRENLYFQGSTALRPYHDVLS---QWQRHYNADRNRWHSAWRQANSNNPQIETR--TGR 66

Query: 81  SLVFKINPNWVPPFQ---LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRG 137
           +L  K   + +          LELRS  L P+FP        L ++ I +  +  ++P  
Sbjct: 67  AL--KATADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELP-- 120

Query: 138 FWNSIFQYD---YLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS-----IFDLSNNALSG 189
             +++ Q+     L ++ N               L   P+ + S        +       
Sbjct: 121 --DTMQQFAGLETLTLARNP--------------LRALPASIASLNRLRELSIRACPELT 164

Query: 190 SIFHLICQGENFS-----KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP 244
            +   +   +         N++ L+L        +P    N   L+ L + N+  + +L 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALG 222

Query: 245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI 304
            +I  L  L  L+LR        P  F   + LK L + +   +  +P  I    ++L  
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHR-LTQLEK 281

Query: 305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
           L+LR        P  + +L +  I+ V  +  +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.1 bits (219), Expect = 3e-19
 Identities = 55/330 (16%), Positives = 98/330 (29%), Gaps = 60/330 (18%)

Query: 40  SLGQIANLEYLDLSN-NKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAF 98
                +  E L       L      +      +      +     ++             
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLS--QWQRHYNADRNRWHSAWRQ-----ANSNNPQ 59

Query: 99  LELRSCHLGPRFPLWLQ--SQKKLYYLDISSTRISAKIPRGFWNSIFQYD---YLNVSGN 153
           +E R+          L+  +Q     L++ S  +       F +  F+     ++ +   
Sbjct: 60  IETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-----FPDQAFRLSHLQHMTIDAA 114

Query: 154 QIYGGVPKFDSPSVPLITTPSLLGS-----IFDLSNNALS---GSIFHLICQGENFSKNI 205
                          L+  P  +          L+ N L     SI  L          +
Sbjct: 115 G--------------LMELPDTMQQFAGLETLTLARNPLRALPASIASL--------NRL 152

Query: 206 EFLKLSKNHFSEDIPD---------CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
             L +       ++P+                L+ L L       SLP SI  L +L SL
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF 316
            +RN+ LS +   +  +L  L+ LD+     + N P   G   + L  L L+        
Sbjct: 212 KIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGG-RAPLKRLILKDCSNLLTL 269

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           P+ + RL  L+ LD+        +P  I  
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.5 bits (176), Expect = 1e-13
 Identities = 37/287 (12%), Positives = 78/287 (27%), Gaps = 82/287 (28%)

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI--------- 291
           GS        +   +L  + +                   D                   
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61

Query: 292 ----------PTWIGE-TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTI 340
                        + + T    + L LRS      FP Q  RL  LQ + +    L   +
Sbjct: 62  TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-EL 119

Query: 341 PRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDIS 400
           P  +  F+                                            L  ++ ++
Sbjct: 120 PDTMQQFA-------------------------------------------GL-ETLTLA 135

Query: 401 KNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG---------VMRSIESLDFSANQ 451
           +N     +P  + +L  L+ L++        +P+ +           + +++SL      
Sbjct: 136 RNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG 194

Query: 452 LSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQLQSFGASSF 494
           +   +P S++NL  L  L + N+ L+  +  +     +L+       
Sbjct: 195 IR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGC 239

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  110 bits (276), Expect = 7e-26
 Identities = 89/470 (18%), Positives = 170/470 (36%), Gaps = 82/470 (17%)

Query: 25  ALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVF 84
           A    +  +N     +   +A      L    +  TVS+     +T L   R    S+  
Sbjct: 6   ATITQDTPINQIFTDT--ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-- 61

Query: 85  KINPNWVPPFQ----LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
                     +    L  +   +  L    P  L++  KL  + +++ +I+   P     
Sbjct: 62  -------DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLT 112

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG--SIFHLICQG 198
           ++     L +  NQI        +   PL    +L  +  +LS+N +S   ++  L    
Sbjct: 113 NL---TGLTLFNNQI--------TDIDPLKNLTNL--NRLELSSNTISDISALSGL---- 155

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                +++ L    N  ++  P    N   L  L++ +N  +      +  L +L SL  
Sbjct: 156 ----TSLQQLSFG-NQVTDLKPLA--NLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318
            NN++S I P     L+ L  L +  N+L  +I T    + + L  L+L +N+       
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLK-DIGTL--ASLTNLTDLDLANNQISN--LA 259

Query: 319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
            L  L  L  L +  N +S      I+  + +               +  +N++ +    
Sbjct: 260 PLSGLTKLTELKLGANQISN-----ISPLAGL-------TALTNLELN--ENQLED---- 301

Query: 379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 438
                 +   S L  +  + +  NN S   PV   +L  LQ L   +N  +     ++  
Sbjct: 302 ------ISPISNLKNLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLAN 351

Query: 439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
           + +I  L    NQ+S   P  ++NL+ +  L L++        +     S
Sbjct: 352 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS 399

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  100 bits (252), Expect = 9e-23
 Identities = 84/470 (17%), Positives = 146/470 (31%), Gaps = 108/470 (22%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           +     L  ++ SNN +    PL    +  L  + ++NN++          NLT L    
Sbjct: 64  VEYLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIA---DITPLANLTNLTGLT 118

Query: 77  AHGNSLVFKINPNWVPPF----QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA 132
              N +        + P      L  LEL S  +       L     L  L     +++ 
Sbjct: 119 LFNNQI------TDIDPLKNLTNLNRLELSSNTI--SDISALSGLTSLQQLSFG-NQVTD 169

Query: 133 KIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS-----IFDLSNNAL 187
             P     ++   + L++S N++               +  S+L           +NN +
Sbjct: 170 LKPLANLTTL---ERLDISSNKV---------------SDISVLAKLTNLESLIATNNQI 211

Query: 188 SGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI 247
           S               N++ L L+ N   +       +   L  L+L NN  +   P  +
Sbjct: 212 SDIT------PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 261

Query: 248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307
             L  L  L L  N++S I P     L+ L  L++ EN+L    P         L  L L
Sbjct: 262 SGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPI---SNLKNLTYLTL 316

Query: 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASS 367
             N      P+    L  LQ L    N +S      +++ +                   
Sbjct: 317 YFNNISDISPVS--SLTKLQRLFFYNNKVSD-----VSSLAN------------------ 351

Query: 368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
                                  L  +  +    N  S   P+   NL  +  L L+   
Sbjct: 352 -----------------------LTNINWLSAGHNQISDLTPLA--NLTRITQLGLNDQA 386

Query: 428 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           +T   P N     SI +   +        P ++S+       +++ N  +
Sbjct: 387 WTN-APVNYKANVSIPNTVKNVTGAL-IAPATISDGGSYTEPDITWNLPS 434

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 96.6 bits (241), Expect = 2e-21
 Identities = 84/445 (18%), Positives = 145/445 (32%), Gaps = 69/445 (15%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           L     L  + ++NN +    PL    + NL  L L NN++          NLT L    
Sbjct: 86  LKNLTKLVDILMNNNQIADITPL--ANLTNLTGLTLFNNQITDI---DPLKNLTNLNRLE 140

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
              N++      + +    L  L   +     +    L +   L  LDISS ++S     
Sbjct: 141 LSSNTISDISALSGLT--SLQQLSFGNQVTDLKP---LANLTTLERLDISSNKVS--DIS 193

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG--SIFHL 194
                    + L  + NQI            PL    +L      L+ N L    ++  L
Sbjct: 194 VLAKLT-NLESLIATNNQISD--------ITPLGILTNL--DELSLNGNQLKDIGTLASL 242

Query: 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254
                    N+  L L+ N  S   P       +L  L LG N  +   P  +  L +L 
Sbjct: 243 --------TNLTDLDLANNQISNLAPLS--GLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG 314
           +L L  N+L  I P    NL  L  L +  N +    P     + ++L  L   +NK   
Sbjct: 291 NLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPV---SSLTKLQRLFFYNNKVSD 345

Query: 315 DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVE 374
                L  L ++  L   +N +S   P  + N + +               +  D     
Sbjct: 346 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQ----------LGLN--DQAW-- 387

Query: 375 DALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD 434
                     V Y + +++  ++           P  +++       +++ NL +    +
Sbjct: 388 ------TNAPVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPSY-TNE 438

Query: 435 NIGVMRSIESLDFSANQLSGQIPQS 459
                    ++       SG + Q 
Sbjct: 439 VSYTFSQPVTIGKGTTTFSGTVTQP 463

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  106 bits (265), Expect = 2e-24
 Identities = 60/461 (13%), Positives = 136/461 (29%), Gaps = 58/461 (12%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
            +   ++++++   +        N++ LDLS N L+  +S       T+L +     N L
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVL 70

Query: 83  VFKINPNWVPPF----QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
                            L  L+L + ++       L     +  L  ++  IS ++    
Sbjct: 71  YE------TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-RVSCSR 118

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
                    + ++ N+I   +   D      +          DL  N +       +   
Sbjct: 119 GQGK---KNIYLANNKI-TMLRDLDEGCRSRVQY-------LDLKLNEIDT-----VNFA 162

Query: 199 ENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
           E  +    +E L L  N   + +    + + +L+ L+L +N     +     +   +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF 316
           +LRNN+L  +I  + R    L+  D+  N               R+  +  ++ K     
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376
             + C +    +                           +     +      ++ ++   
Sbjct: 279 NEEECTV--PTLGHYGAYCCEDL---------------PAPFADRLIALKRKEHALLSGQ 321

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436
              T+    E  +     R ID  K  +   I       Q   +L         ++ +  
Sbjct: 322 GSETERLECERENQARQ-REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
                ++     A     ++  +    S L  L        
Sbjct: 381 RAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYE 420

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (262), Expect = 4e-24
 Identities = 41/310 (13%), Positives = 98/310 (31%), Gaps = 34/310 (10%)

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263
             +  K++ +   + +     +   ++ L+L  N  +      +     L  LNL +N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRL 323
              +     +LS L+ LD+  N +   +          +  L+  +N       +   R 
Sbjct: 71  YETLD--LESLSTLRTLDLNNNYV-QELL-----VGPSIETLHAANNNISR---VSCSRG 119

Query: 324 GSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGF 383
              + + +A N ++          S +   D               NEI     +     
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK------------LNEIDT---VNFAEL 164

Query: 384 LVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE 443
                +  + +  +++  N    ++  +      L++L+LS N     +         + 
Sbjct: 165 A----ASSDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAP 503
            +    N+L   I +++     L + +L  N  +         ++    + A   +    
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 504 LSNCTEKNIL 513
             N  E  + 
Sbjct: 277 GQNEEECTVP 286

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 97.6 bits (243), Expect = 9e-22
 Identities = 59/458 (12%), Positives = 142/458 (31%), Gaps = 70/458 (15%)

Query: 46  NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCH 105
             +   ++++ L   ++ +   +   +      GN L        +    LA        
Sbjct: 11  RYKIEKVTDSSLKQALASL-RQSAWNVKELDLSGNPLSQ------ISAADLAPF------ 57

Query: 106 LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165
                        KL  L++SS  +   +     +++     L+++ N +          
Sbjct: 58  ------------TKLELLNLSSNVLYETLDLESLSTLR---TLDLNNNYV---------- 92

Query: 166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
              L+  PS+       +NN +S                 + + L+ N  +         
Sbjct: 93  -QELLVGPSI--ETLHAANNNISR------VSCSRGQ-GKKNIYLANNKITMLRDLDEGC 142

Query: 226 WPRLRMLNLGNNNFTG-SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
             R++ L+L  N     +      + ++L  LNL+ N +  +        + LK LD+  
Sbjct: 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV--FAKLKTLDLSS 200

Query: 285 NELVGNIPTWIGETF---SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP 341
           N+L      ++G  F   + +  ++LR+NK        L    +L+  D+  N       
Sbjct: 201 NKL-----AFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTL 254

Query: 342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL-------VTKGFLVEYNSILNLV 394
           R   + +    T +      +   +  +  +             +   F     ++    
Sbjct: 255 RDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
            ++   + + +  +  E  N    + ++     +   I       ++  +L+     L  
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDE 374

Query: 455 QIP---QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 489
           Q+    ++ + L       +    L       + LQ  
Sbjct: 375 QVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLL 412

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.5 bits (240), Expect = 3e-21
 Identities = 49/287 (17%), Positives = 100/287 (34%), Gaps = 45/287 (15%)

Query: 219 IPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK 278
           I +   N  R ++  + +++   +L     +  ++  L+L  N LS I        + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 279 ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG 338
            L++  N L            S L  L+L +N        +L    S++ L  A N++S 
Sbjct: 62  LLNLSSNVLY-ETLDLES--LSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 339 TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVR--S 396
            +    +          +            +N+I            +         R   
Sbjct: 113 RVS--CSRGQGKKNIYLA------------NNKITM----------LRDLDEGCRSRVQY 148

Query: 397 IDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455
           +D+  N            +   L+ LNL +N     +   +     +++LD S+N+L+  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-F 205

Query: 456 IPQSMSNLSFLNYLNLSNNNLN---GEIPSSTQLQSFGASSFAGNDL 499
           +     + + + +++L NN L      +  S  L+ F      GN  
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF---DLRGNGF 249

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 88.4 bits (219), Expect = 9e-19
 Identities = 53/403 (13%), Positives = 117/403 (29%), Gaps = 58/403 (14%)

Query: 115 QSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174
           Q+  +     ++ + +  +       S +    L++SGN +          +  L     
Sbjct: 7   QNGNRYKIEKVTDSSLK-QALASLRQSAWNVKELDLSGNPLS------QISAADLAPFTK 59

Query: 175 LLGSIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRML 232
           L   + +LS+N L     +  L          +  L L+ N+  E +       P +  L
Sbjct: 60  LE--LLNLSSNVLYETLDLESL--------STLRTLDLNNNYVQE-LLVG----PSIETL 104

Query: 233 NLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP 292
           +  NNN +    +S        ++ L NN+++ +        S ++ LD+  NE+     
Sbjct: 105 HAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF 161

Query: 293 TWIGETFSRLMILNLRSNKFHG---------------------DFPIQLCRLGSLQILDV 331
             +  +   L  LNL+ N  +                          +      +  + +
Sbjct: 162 AELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221

Query: 332 AYNSLSGTIPRCINNFSAMATTD------SSDPNSGIFYASSGDNEIVEDALLVTKGFLV 385
             N L   I + +     +   D              F  +     + +  +    G   
Sbjct: 222 RNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280

Query: 386 EYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQS--LNLSHNLFTGRIPDNIGVMRSIE 443
           E  ++  L         +        +  L+  +   L+   +    R+           
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETE-RLECERENQARQR 339

Query: 444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 486
            +D    Q    I Q          L      L+ ++ +  + 
Sbjct: 340 EIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRA 382

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.6 bits (204), Expect = 7e-17
 Identities = 37/248 (14%), Positives = 83/248 (33%), Gaps = 57/248 (22%)

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
           ++       N      + ++ L   + +  ++   +K LD+  N L       +   F++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP-FTK 59

Query: 302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361
           L +LNL SN  +    ++   L +L+ LD+  N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL 421
                                           + ++  + NN S    V  +  QG +++
Sbjct: 101 --------------------------------IETLHAANNNISR---VSCSRGQGKKNI 125

Query: 422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG-QIPQSMSNLSFLNYLNLSNNNLNGEI 480
            L++N  T     + G    ++ LD   N++      +  ++   L +LNL  N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 481 PSSTQLQS 488
                   
Sbjct: 185 KGQVVFAK 192

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 34/272 (12%), Positives = 84/272 (30%), Gaps = 14/272 (5%)

Query: 16  QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
              R +  + + L+NN +     L  G  + ++YLDL  N+++         +   L   
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
               N +   +    V   +L  L+L S  L        QS   + ++ + + ++   I 
Sbjct: 175 NLQYNFIY-DV-KGQVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IE 230

Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLI 195
           +    S    ++ ++ GN  + G  +         +    + ++   +   L+G      
Sbjct: 231 KALRFSQ-NLEHFDLRGNGFHCGTLRD------FFSKNQRVQTVAKQTVKKLTGQNEEEC 283

Query: 196 CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMS 255
                        +     F++ +    +      +L+   +     L            
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIA--LKRKEHALLSGQGSETE-RLECERENQARQRE 340

Query: 256 LNLRNNRLSGIIPTSFRNLSILKALDMGENEL 287
           ++    +   +I            L+  +  L
Sbjct: 341 IDALKEQYRTVIDQVTLRKQAKITLEQKKKAL 372

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  103 bits (258), Expect = 2e-24
 Identities = 40/275 (14%), Positives = 90/275 (32%), Gaps = 34/275 (12%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
              +  K++ +   + +     +   ++ L+L  N  +      +     L  LNL +N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           L   +     +LS L+ LD+  N +   +          +  L+  +N       +   R
Sbjct: 70  LYETLD--LESLSTLRTLDLNNNYV-QELL-----VGPSIETLHAANNNISR---VSCSR 118

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
               + + +A N ++          S +   D               NEI      V   
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK------------LNEIDT----VNFA 162

Query: 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442
            L       + +  +++  N    ++  +      L++L+LS N     +         +
Sbjct: 163 ELAAS---SDTLEHLNLQYNFIY-DVKGQ-VVFAKLKTLDLSSNKLA-FMGPEFQSAAGV 216

Query: 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
             +    N+L   I +++     L + +L  N  +
Sbjct: 217 TWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.0 bits (242), Expect = 3e-22
 Identities = 50/287 (17%), Positives = 103/287 (35%), Gaps = 45/287 (15%)

Query: 219 IPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK 278
           I +   N  R ++  + +++   +L     +  ++  L+L  N LS I        + L+
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 279 ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG 338
            L++  N L   +     E+ S L  L+L +N        +L    S++ L  A N++S 
Sbjct: 62  LLNLSSNVLYETLDL---ESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS- 112

Query: 339 TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVR--S 396
            +    +          +            +N+I            +         R   
Sbjct: 113 RVS--CSRGQGKKNIYLA------------NNKITM----------LRDLDEGCRSRVQY 148

Query: 397 IDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ 455
           +D+  N            +   L+ LNL +N     +   +     +++LD S+N+L+  
Sbjct: 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLSSNKLA-F 205

Query: 456 IPQSMSNLSFLNYLNLSNNNLN---GEIPSSTQLQSFGASSFAGNDL 499
           +     + + + +++L NN L      +  S  L+ F      GN  
Sbjct: 206 MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHF---DLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 95.4 bits (238), Expect = 8e-22
 Identities = 47/313 (15%), Positives = 105/313 (33%), Gaps = 39/313 (12%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
              +   ++++++   +        N++ LDLS N L+  +S       T+L +     N
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSN 68

Query: 81  SLVFKINPNWVPPF----QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
            L                 L  L+L + ++       L     +  L  ++  IS ++  
Sbjct: 69  VLYE------TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS-RVSC 116

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLIC 196
                      + ++ N+I           +       +     DL  N +       + 
Sbjct: 117 SRGQGK---KNIYLANNKIT------MLRDLDEGCRSRV--QYLDLKLNEIDT-----VN 160

Query: 197 QGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254
             E  +    +E L L  N   + +    + + +L+ L+L +N     +     +   + 
Sbjct: 161 FAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG 314
            ++LRNN+L  +I  + R    L+  D+  N               R+  +  ++ K   
Sbjct: 218 WISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276

Query: 315 DFPIQLCRLGSLQ 327
               + C + +L 
Sbjct: 277 GQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 37/248 (14%), Positives = 82/248 (33%), Gaps = 57/248 (22%)

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR 301
           ++       N      + ++ L   + +  ++   +K LD+  N L   I       F++
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTK 59

Query: 302 LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG 361
           L +LNL SN  +    ++   L +L+ LD+  N +   +    +                
Sbjct: 60  LELLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQ-ELLVGPS---------------- 100

Query: 362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL 421
                                           + ++  + NN S  +       QG +++
Sbjct: 101 --------------------------------IETLHAANNNIS-RVSCS--RGQGKKNI 125

Query: 422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG-QIPQSMSNLSFLNYLNLSNNNLNGEI 480
            L++N  T     + G    ++ LD   N++      +  ++   L +LNL  N +  ++
Sbjct: 126 YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DV 184

Query: 481 PSSTQLQS 488
                   
Sbjct: 185 KGQVVFAK 192

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 33/223 (14%), Positives = 75/223 (33%), Gaps = 23/223 (10%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
             R +  + + L+NN +     L  G  + ++YLDL  N+++         +   L    
Sbjct: 116 CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLN 175

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
              N +   +    V   +L  L+L S  L        QS   + ++ + + ++   I +
Sbjct: 176 LQYNFIY-DV-KGQVVFAKLKTLDLSSNKL-AFMGPEFQSAAGVTWISLRNNKLV-LIEK 231

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLIC 196
               S    ++ ++ GN  +              T          +    ++      + 
Sbjct: 232 ALRFSQ-NLEHFDLRGNGFH------------CGTLRDFFSKNQRVQT--VAKQTVKKLT 276

Query: 197 QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
                   +  L     +  ED+P  +      R++ LG+++ 
Sbjct: 277 GQNEEECTVPTLGHYGAYCCEDLPAPFA----DRLIALGHHHH 315

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  103 bits (259), Expect = 3e-24
 Identities = 75/456 (16%), Positives = 138/456 (30%), Gaps = 114/456 (25%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
              L      +N   P +   +A      L    +      +    L  +      G  +
Sbjct: 2   AATLATLPAPINQIFPDA--DLAEGIRAVLQKASVTDV---VTQEELESITKLVVAGEKV 56

Query: 83  VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSI 142
              I                           ++    L YL+++  +I+   P      +
Sbjct: 57  A-SIQG-------------------------IEYLTNLEYLNLNGNQITDISPLSNLVKL 90

Query: 143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202
                L +  N+I        +    L    +L      L+ + +S             +
Sbjct: 91  ---TNLYIGTNKI--------TDISALQNLTNL--RELYLNEDNISDI--------SPLA 129

Query: 203 --KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
               +  L L  NH   D+     N   L  L +  +      P  I  L  L SL+L  
Sbjct: 130 NLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNY 186

Query: 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL 320
           N++  I P    +L+ L       N++    P       +RL  L + +NK     P  L
Sbjct: 187 NQIEDISP--LASLTSLHYFTAYVNQITDITPV---ANMTRLNSLKIGNNKITDLSP--L 239

Query: 321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT 380
             L  L  L++  N +S      IN                                   
Sbjct: 240 ANLSQLTWLEIGTNQISD-----INAVKD------------------------------- 263

Query: 381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440
                     L  ++ +++  N  S    +   NL  L SL L++N       + IG + 
Sbjct: 264 ----------LTKLKMLNVGSNQISDISVLN--NLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
           ++ +L  S N ++   P  +++LS ++  + +N  +
Sbjct: 312 NLTTLFLSQNHITDIRP--LASLSKMDSADFANQVI 345

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 94.5 bits (236), Expect = 3e-21
 Identities = 62/281 (22%), Positives = 117/281 (41%), Gaps = 40/281 (14%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
            N+E+L L+ N  ++  P   +   +L  L +G N  T     ++  L +L  L L  + 
Sbjct: 66  TNLEYLNLNGNQITDISPLSNL--VKLTNLYIGTNKITD--ISALQNLTNLRELYLNEDN 121

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           +S I P    NL+ + +L++G N  + ++        + L  L +  +K     PI    
Sbjct: 122 ISDISP--LANLTKMYSLNLGANHNLSDLSPL--SNMTGLNYLTVTESKVKDVTPIA--N 175

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
           L  L  L + YN +       I+  +++         + + Y ++  N+I +        
Sbjct: 176 LTDLYSLSLNYNQIED-----ISPLASL---------TSLHYFTAYVNQITD-------- 213

Query: 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442
            +    ++  L  S+ I  N  +   P+   NL  L  L +  N  +    + +  +  +
Sbjct: 214 -ITPVANMTRL-NSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISD--INAVKDLTKL 267

Query: 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
           + L+  +NQ+S      ++NLS LN L L+NN L  E    
Sbjct: 268 KMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEV 306

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 90.7 bits (226), Expect = 5e-20
 Identities = 71/441 (16%), Positives = 141/441 (31%), Gaps = 116/441 (26%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
                      L   +V   +     ++ ++  L ++  K+  ++  I    LT L    
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQE--ELESITKLVVAGEKVA-SIQGIE--YLTNLEYLN 72

Query: 77  AHGNSLVFKINPNWVPPF----QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA 132
            +GN +        + P     +L  L + +  +       LQ+   L  L ++   IS 
Sbjct: 73  LNGNQI------TDISPLSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISD 124

Query: 133 KIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIF 192
             P      +     LN+  N                ++  S L ++             
Sbjct: 125 ISPLANLTKM---YSLNLGANH--------------NLSDLSPLSNM------------- 154

Query: 193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS 252
                       + +L ++++   +  P    N   L  L+L  N      P  + +L S
Sbjct: 155 ----------TGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTS 200

Query: 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF 312
           L       N+++ I P    N++ L +L +G N++    P       S+L  L + +N+ 
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSPL---ANLSQLTWLEIGTNQI 255

Query: 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEI 372
                  +  L  L++L+V  N +S      I+  + ++                     
Sbjct: 256 SD--INAVKDLTKLKMLNVGSNQISD-----ISVLNNLS--------------------- 287

Query: 373 VEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432
                               L  S+ ++ N    E    +  L  L +L LS N  T   
Sbjct: 288 -------------------QL-NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR 327

Query: 433 PDNIGVMRSIESLDFSANQLS 453
           P  +  +  ++S DF+   + 
Sbjct: 328 P--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 79.1 bits (196), Expect = 3e-16
 Identities = 47/288 (16%), Positives = 92/288 (31%), Gaps = 67/288 (23%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
                  L K   ++ +    +    +  L +       S+   I  L +L  LNL  N+
Sbjct: 22  AEGIRAVLQKASVTDVVTQEEL--ESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQ 77

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           ++ I P    NL  L  L +G N++  +I     +  + L  L L  +         L  
Sbjct: 78  ITDISP--LSNLVKLTNLYIGTNKIT-DISAL--QNLTNLRELYLNEDNISD--ISPLAN 130

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
           L  +  L++  N     +                                          
Sbjct: 131 LTKMYSLNLGANHNLSDLS----------------------------------------- 149

Query: 383 FLVEYNSILNLV--RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR 440
                  + N+     + ++++      P+   NL  L SL+L++N         +  + 
Sbjct: 150 ------PLSNMTGLNYLTVTESKVKDVTPIA--NLTDLYSLSLNYNQIED--ISPLASLT 199

Query: 441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
           S+       NQ++   P  ++N++ LN L + NN +   +     L  
Sbjct: 200 SLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITD-LSPLANLSQ 244

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.6 bits (174), Expect = 2e-13
 Identities = 42/253 (16%), Positives = 79/253 (31%), Gaps = 60/253 (23%)

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
              L           P     L   +   L+   ++ ++      L  +  L +   ++ 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKV- 56

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
            +I     E  + L  LNL  N+        L  L  L  L +  N ++      I+   
Sbjct: 57  ASIQGI--EYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGTNKITD-----ISALQ 107

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
            +                                         NL R + ++++N S   
Sbjct: 108 NLT----------------------------------------NL-RELYLNEDNISDIS 126

Query: 409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468
           P+   NL  + SLNL  N         +  M  +  L  + +++    P  ++NL+ L  
Sbjct: 127 PLA--NLTKMYSLNLGANHNLS-DLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 469 LNLSNNNLNGEIP 481
           L+L+ N +    P
Sbjct: 182 LSLNYNQIEDISP 194

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (255), Expect = 4e-23
 Identities = 59/279 (21%), Positives = 100/279 (35%), Gaps = 23/279 (8%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
           E        L L KN       D + ++P L  L L  N  +   P +   L +L +L L
Sbjct: 28  EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGL 87

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318
           R+NRL  I    F  LS L  LD+ EN++V  +  ++ +    L  L +  N        
Sbjct: 88  RSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHR 146

Query: 319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
               L SL+ L +   +L+ +IP      S +           +         I      
Sbjct: 147 AFSGLNSLEQLTLEKCNLT-SIPT--EALSHL-------HGLIVLRLRH--LNINA---- 190

Query: 379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDN-IG 437
           +           L  ++ ++IS   +   +         L SL+++H   T  +P   + 
Sbjct: 191 IRDYSF----KRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVR 245

Query: 438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            +  +  L+ S N +S      +  L  L  + L    L
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL 284

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (254), Expect = 4e-23
 Identities = 61/329 (18%), Positives = 111/329 (33%), Gaps = 54/329 (16%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
               R LDL  N +            +LE L+L+ N +   V    F NL  L       
Sbjct: 31  PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRS 89

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N L   I           F  L +                L  LDIS  +I   +    +
Sbjct: 90  NRLK-LIPLG-------VFTGLSN----------------LTKLDISENKIVI-LLDYMF 124

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVP---LITTPSLLGSIFDLSNNALS----GSIF 192
             ++    L V  N +           +         SL      L    L+     ++ 
Sbjct: 125 QDLYNLKSLEVGDNDLV---------YISHRAFSGLNSL--EQLTLEKCNLTSIPTEALS 173

Query: 193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS 252
           HL          +  L+L   + +      +    RL++L + +  +  ++  +     +
Sbjct: 174 HL--------HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLN 225

Query: 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF 312
           L SL++ +  L+ +   + R+L  L+ L++  N +   I   +     RL  + L   + 
Sbjct: 226 LTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQL 284

Query: 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIP 341
               P     L  L++L+V+ N L+ T+ 
Sbjct: 285 AVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  101 bits (253), Expect = 5e-23
 Identities = 69/304 (22%), Positives = 125/304 (41%), Gaps = 41/304 (13%)

Query: 181 DLSNNALSGSIFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
           DL  N +           + F+   ++E L+L++N  S   P  + N   LR L L +N 
Sbjct: 38  DLGKNRIK------TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 239 FTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
               +P+ +   L++L  L++  N++  ++   F++L  LK+L++G+N+LV  I      
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISH---R 146

Query: 298 TFS---RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTD 354
            FS    L  L L            L  L  L +L + + +++  I      F  +    
Sbjct: 147 AFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYS--FKRLYRLK 203

Query: 355 SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-T 413
             +         S    +         G        LNL  S+ I+  N +  +P     
Sbjct: 204 VLEI--------SHWPYLDTMTPNCLYG--------LNL-TSLSITHCNLT-AVPYLAVR 245

Query: 414 NLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS 472
           +L  L+ LNLS+N  +  I  ++   +  ++ +     QL+   P +   L++L  LN+S
Sbjct: 246 HLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

Query: 473 NNNL 476
            N L
Sbjct: 305 GNQL 308

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 60/310 (19%), Positives = 107/310 (34%), Gaps = 22/310 (7%)

Query: 15  NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLV 74
           ++   F  L  L+L+ N V+   P +   + NL  L L +N+L   +    F  L+ L  
Sbjct: 50  DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTK 108

Query: 75  FRAHGNSLVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAK 133
                N +V  +          L  LE+    L             L  L +    ++  
Sbjct: 109 LDISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-S 166

Query: 134 IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFH 193
           IP    + +     L +    I                   L   + ++S+     ++  
Sbjct: 167 IPTEALSHLHGLIVLRLRHLNIN------AIRDYSFKRLYRL--KVLEISHWPYLDTMTP 218

Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL 253
               G     N+  L ++  + +        +   LR LNL  N  +      +  L  L
Sbjct: 219 NCLYG----LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274

Query: 254 MSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFH 313
             + L   +L+ + P +FR L+ L+ L++  N+L   +   +  +   L  L L SN   
Sbjct: 275 QEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEESVFHSVGNLETLILDSNPLA 333

Query: 314 GDFPIQLCRL 323
            D     CRL
Sbjct: 334 CD-----CRL 338

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.2 bits (180), Expect = 7e-14
 Identities = 43/260 (16%), Positives = 78/260 (30%), Gaps = 52/260 (20%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
            + R +      F  ++P  I        L+L  NR+  +    F +   L+ L++ EN 
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           +   +          L  L LRSN+           L +L  LD++ N +   +      
Sbjct: 68  V-SAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIV-ILLD--YM 123

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
           F  +                                         NL +S+++  N+   
Sbjct: 124 FQDLY----------------------------------------NL-KSLEVGDNDLV- 141

Query: 407 EIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLS 464
            I     + L  L+ L L     T  IP      +  +  L      ++     S   L 
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 465 FLNYLNLSNNNLNGEIPSST 484
            L  L +S+      +  + 
Sbjct: 201 RLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 4/156 (2%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L LR             R   L+ L++S+      +  +     NL  L +++  L   
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-A 238

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPLWLQSQKK 119
           V  +   +L  L       N +   I  +      +L  ++L    L    P   +    
Sbjct: 239 VPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI 155
           L  L++S  +++  +    ++S+   + L +  N +
Sbjct: 298 LRVLNVSGNQLTT-LEESVFHSVGNLETLILDSNPL 332

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  100 bits (250), Expect = 7e-23
 Identities = 65/373 (17%), Positives = 131/373 (35%), Gaps = 58/373 (15%)

Query: 117 QKKLYYLDISSTRISAKIPRGFWNSIFQY-DYLNVSGNQIYGGVPKFDSPSVPLITTPSL 175
           Q    + D+     +  +  GF +        +    + +         P+  L +   +
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR------KLPAALLDSFRQV 71

Query: 176 LGSIFDLSNNALSGSIFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLN 233
              + +L++  +   I         F+    I+ L +  N      P  + N P L +L 
Sbjct: 72  --ELLNLNDLQIE-EI-----DTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123

Query: 234 LGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP 292
           L  N+ + SLP  I      L +L++ NN L  I   +F+  + L+ L +  N L  ++ 
Sbjct: 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 181

Query: 293 TWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT 352
                    L   N+  N         L    +++ LD ++NS++  +         +  
Sbjct: 182 L---SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--PVNVELTI 230

Query: 353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV 412
                            N + + A L+              +  +D+S N    +I    
Sbjct: 231 LKLQ------------HNNLTDTAWLLN----------YPGLVEVDLSYNELE-KIMYHP 267

Query: 413 -TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL 471
              +Q L+ L +S+N     +      + +++ LD S N L   + ++      L  L L
Sbjct: 268 FVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYL 325

Query: 472 SNNNLNGEIPSST 484
            +N++   +  ST
Sbjct: 326 DHNSIV-TLKLST 337

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 96.7 bits (241), Expect = 1e-21
 Identities = 64/330 (19%), Positives = 122/330 (36%), Gaps = 45/330 (13%)

Query: 14  TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLL 73
              L  F+ +  L+L++  +      +      ++ L +  N +   +    F N+  L 
Sbjct: 62  AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLT 120

Query: 74  VFRAHGNSL------VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISS 127
           V     N L      +F   P       L  L + + +L        Q+   L  L +SS
Sbjct: 121 VLVLERNDLSSLPRGIFHNTPK------LTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 174

Query: 128 TRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNAL 187
            R++  +      S+F     NVS N +              +  P  +    D S+N++
Sbjct: 175 NRLT-HVDLSLIPSLFH---ANVSYNLL------------STLAIPIAV-EELDASHNSI 217

Query: 188 SGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI 247
           +  +          +  +  LKL  N+ ++      +N+P L  ++L  N     +    
Sbjct: 218 N-VV------RGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307
             +  L  L + NNRL   +    + +  LK LD+  N L+ ++     + F RL  L L
Sbjct: 269 VKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQ-FDRLENLYL 325

Query: 308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
             N       ++L    +L+ L +++N   
Sbjct: 326 DHNSIV---TLKLSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 89.7 bits (223), Expect = 2e-19
 Identities = 52/293 (17%), Positives = 101/293 (34%), Gaps = 28/293 (9%)

Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCW--MNWPRLRMLNLGNNNFTGSLPMSIGALN 251
             C   N   +  F  +  +  ++D+   +  +     +++   N+         + +  
Sbjct: 10  YKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFR 69

Query: 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNK 311
            +  LNL + ++  I   +F     ++ L MG N +   +P  + +    L +L L  N 
Sbjct: 70  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 128

Query: 312 FHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNE 371
                         L  L ++ N+L           +++     S             N 
Sbjct: 129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS------------SNR 176

Query: 372 I--VEDALLVTKGFL-VEYNSILNL-----VRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423
           +  V+ +L+ +     V YN +  L     V  +D S N+ +  +   V     L  L L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRGPV--NVELTILKL 233

Query: 424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            HN  T      +     +  +D S N+L   +      +  L  L +SNN L
Sbjct: 234 QHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRL 284

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 88.2 bits (219), Expect = 5e-19
 Identities = 54/329 (16%), Positives = 112/329 (34%), Gaps = 32/329 (9%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
               + +   T +         + N + +   N+ +   +      +  Q+ +   +   
Sbjct: 22  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 80

Query: 82  LVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
           +  +I+         +  L +    +    P   Q+   L  L +    +S  +PRG ++
Sbjct: 81  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFH 138

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
           +  +   L++S N +                T SL      LS+N L+     LI     
Sbjct: 139 NTPKLTTLSMSNNNLE------RIEDDTFQATTSL--QNLQLSSNRLTHVDLSLI----- 185

Query: 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
              ++    +S N  S  +         +  L+  +N+    +         L  L L++
Sbjct: 186 --PSLFHANVSYNLLST-LAIP----IAVEELDASHNSIN-VVR--GPVNVELTILKLQH 235

Query: 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL 320
           N L+        N   L  +D+  NEL   I         RL  L + +N+      +  
Sbjct: 236 NNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 291

Query: 321 CRLGSLQILDVAYNSLSGTIPRCINNFSA 349
             + +L++LD+++N L   + R    F  
Sbjct: 292 QPIPTLKVLDLSHNHLL-HVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 51/285 (17%), Positives = 95/285 (33%), Gaps = 32/285 (11%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
           L  L L  N ++            L  L +SNN L   + +  F   T L   +   N L
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRL 177

Query: 83  VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSI 142
              ++ + +P   L    +    L       L     +  LD S   I+  +       +
Sbjct: 178 T-HVDLSLIP--SLFHANVSYNLLST-----LAIPIAVEELDASHNSIN-VVRGPVNVEL 228

Query: 143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202
                L +  N +              +     L  + DLS N L   I +         
Sbjct: 229 ---TILKLQHNNLT---------DTAWLLNYPGLVEV-DLSYNELE-KIMYHPFVK---M 271

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
           + +E L +S N     +       P L++L+L +N+    +  +    + L +L L +N 
Sbjct: 272 QRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS 329

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL 307
           +  +  ++      LK L +  N+   N    +    +R  + + 
Sbjct: 330 IVTLKLSTHHT---LKNLTLSHNDWDCNSLRALFRNVARPAVDDA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 37/260 (14%), Positives = 91/260 (35%), Gaps = 53/260 (20%)

Query: 236 NNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWI 295
                  +  ++        +++               L+  K +    + +   +P  +
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAAL 64

Query: 296 GETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDS 355
            ++F ++ +LNL   +             ++Q L + +N++   +P              
Sbjct: 65  LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLP-------------- 109

Query: 356 SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TN 414
                 +F                           + L+  + + +N+ S  +P  +  N
Sbjct: 110 ----PHVFQN-------------------------VPLLTVLVLERNDLS-SLPRGIFHN 139

Query: 415 LQGLQSLNLSHNLFTGRIPDNIGV-MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
              L +L++S+N    RI D+      S+++L  S+N+L+  +   +S +  L + N+S 
Sbjct: 140 TPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSY 195

Query: 474 NNLNGEIPSSTQLQSFGASS 493
           N L+  +     ++   AS 
Sbjct: 196 NLLS-TLAIPIAVEELDASH 214

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 3e-21
 Identities = 92/473 (19%), Positives = 145/473 (30%), Gaps = 123/473 (26%)

Query: 12  HLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVS-EIHFLNLT 70
            +  +    K+      + +      P   G+   +    L +         E++ L L+
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 71  QLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI 130
            L               P   P   L  L      L    P   QS K L   + +   +
Sbjct: 85  SL---------------PELPP--HLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 131 SAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGS 190
           S   P          +YL VS NQ+           +P +   S L  I D+ NN+L   
Sbjct: 127 SDLPP--------LLEYLGVSNNQL---------EKLPELQNSSFL-KIIDVDNNSLK-K 167

Query: 191 IFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL 250
           +  L         ++EF+    N   E +P+   N P L  +   NN+    LP      
Sbjct: 168 LPDLP-------PSLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLK-KLPDLPL-- 215

Query: 251 NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN 310
            SL S+   NN L        +NL  L  +    N L   +P         L  LN+R N
Sbjct: 216 -SLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPS----LEALNVRDN 267

Query: 311 KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDN 370
               D P     L  L + +  ++ LS   P                             
Sbjct: 268 YLT-DLPELPQSLTFLDVSENIFSGLSELPPN---------------------------- 298

Query: 371 EIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 430
                                  +  ++ S N     +     +L+    LN+S+N    
Sbjct: 299 -----------------------LYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI- 330

Query: 431 RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
            +P        +E L  S N L+ ++P+   NL     L++  N L  E P  
Sbjct: 331 ELPALPP---RLERLIASFNHLA-EVPELPQNLK---QLHVEYNPLR-EFPDI 375

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 2e-20
 Identities = 87/475 (18%), Positives = 162/475 (34%), Gaps = 106/475 (22%)

Query: 19  RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH 78
             +    L+L+N  ++  +P       +LE L  S N L          +L  LLV   +
Sbjct: 69  LDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLTELPELPQ--SLKSLLVDNNN 122

Query: 79  GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
             +L          P  L +L + +  L  + P  LQ+   L  +D+ +  +  K+P   
Sbjct: 123 LKAL-------SDLPPLLEYLGVSNNQL-EKLPE-LQNSSFLKIIDVDNNSLK-KLP--- 169

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
            +     +++    NQ+           +P +     L +     NN+L   +  L    
Sbjct: 170 -DLPPSLEFIAAGNNQLE---------ELPELQNLPFL-TAIYADNNSLK-KLPDLPL-- 215

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                ++E +    N   E +P+   N P L  +   NN    +LP       SL +LN+
Sbjct: 216 -----SLESIVAGNNILEE-LPE-LQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNV 264

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIP------------TWIGETFSRLMILN 306
           R+N L+ + P   ++L+ L   +   + L    P              + +    L  LN
Sbjct: 265 RDNYLTDL-PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELN 323

Query: 307 LRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS 366
           + +NK   + P        L+ L  ++N L+  +P    N   +                
Sbjct: 324 VSNNKLI-ELP---ALPPRLERLIASFNHLA-EVPELPQNLKQLH--------------- 363

Query: 367 SGDNEIVEDALLVTKGFLVEYNSILNLVRSI----DISKNNFSGEIPVEVTNLQGLQSLN 422
                             VEYN +           D+  N+   E+P    NL+    L+
Sbjct: 364 ------------------VEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLK---QLH 402

Query: 423 LSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           +  N      PD      S+E L  ++ ++      +      L      +++ +
Sbjct: 403 VETNPLR-EFPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 86.2 bits (214), Expect = 4e-18
 Identities = 63/303 (20%), Positives = 104/303 (34%), Gaps = 82/303 (27%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
           +   +    L+L+    S  +P+     P L  L    N+ T  LP    +L SL+  N 
Sbjct: 67  DCLDRQAHELELNNLGLSS-LPE---LPPHLESLVASCNSLT-ELPELPQSLKSLLVDNN 121

Query: 259 RNNRLSGIIPT---------------SFRNLSILKALDMGENELVGNIPTWIGETFSRLM 303
               LS + P                  +N S LK +D+  N L   +P         L 
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPP----SLE 176

Query: 304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF 363
            +   +N+   + P +L  L  L  +    NSL   +P                      
Sbjct: 177 FIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLP---------------------- 211

Query: 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423
                                   +  L+L  SI    N    E+P E+ NL  L ++  
Sbjct: 212 ------------------------DLPLSL-ESIVAGNNILE-ELP-ELQNLPFLTTIYA 244

Query: 424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
            +NL    +PD      S+E+L+   N L+  +P+   +L+FL+      + L+   P+ 
Sbjct: 245 DNNLLK-TLPDLPP---SLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPNL 299

Query: 484 TQL 486
             L
Sbjct: 300 YYL 302

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 81.2 bits (201), Expect = 2e-16
 Identities = 54/282 (19%), Positives = 98/282 (34%), Gaps = 51/282 (18%)

Query: 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSG 265
              +  +   S  + DC     +   L L N   + SLP        L SL    N L+ 
Sbjct: 53  GNGEQREMAVSR-LRDCLDR--QAHELELNNLGLS-SLPELPP---HLESLVASCNSLT- 104

Query: 266 IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS 325
            +P   ++L  L   +     L    P         L  L + +N+     P +L     
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSDLPPL--------LEYLGVSNNQLE-KLP-ELQNSSF 154

Query: 326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLV 385
           L+I+DV  NSL   +P    +   +               ++G+N++ E         L 
Sbjct: 155 LKIIDVDNNSLK-KLPDLPPSLEFI---------------AAGNNQLEE---------LP 189

Query: 386 EYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL 445
           E  ++  L  +I    N+   ++P    +L+   S+   +N+        +  +  + ++
Sbjct: 190 ELQNLPFL-TAIYADNNSLK-KLPDLPLSLE---SIVAGNNILE--ELPELQNLPFLTTI 242

Query: 446 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 487
               N L   +P    +L  LN  +    +L     S T L 
Sbjct: 243 YADNNLLK-TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLD 283

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.3 bits (191), Expect = 3e-15
 Identities = 65/344 (18%), Positives = 112/344 (32%), Gaps = 62/344 (18%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           L     L+ +D+ NN     +        +LE++   NN+L   + E+   NL  L    
Sbjct: 149 LQNSSFLKIIDVDNN----SLKKLPDLPPSLEFIAAGNNQLE-ELPELQ--NLPFLTAIY 201

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
           A  NSL  K+      P  L  +   +  L       LQ+   L  +   +  +   +P 
Sbjct: 202 ADNNSLK-KLPDL---PLSLESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLP- 253

Query: 137 GFWNSIFQYDYLNVSGNQI------YGGVPKFDSPSVPLITTPSLLGSI--FDLSNNALS 188
              +     + LNV  N +         +   D           L  ++   + S+N + 
Sbjct: 254 ---DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 310

Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG 248
            S+  L         ++E L +S N   E +P      PRL  L    N+    +P    
Sbjct: 311 -SLCDLP-------PSLEELNVSNNKLIE-LPALP---PRLERLIASFNHLA-EVPELPQ 357

Query: 249 ALNSLMSLNLRNNRLSGI--IPTSFRNLSI-------------LKALDMGENELVGNIPT 293
              +L  L++  N L     IP S  +L +             LK L +  N L    P 
Sbjct: 358 ---NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR-EFPD 413

Query: 294 WIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
                   +  L + S +    +         L+     ++   
Sbjct: 414 IPES----VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 74.3 bits (183), Expect = 3e-14
 Identities = 41/265 (15%), Positives = 88/265 (33%), Gaps = 53/265 (20%)

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
           L+     ++N T  +P+    + S        +      P        +    + +    
Sbjct: 13  LQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD- 70

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
                       +   L L +       P        L+ L  + NSL+  +P    +  
Sbjct: 71  -----------RQAHELELNNLGLS-SLPELP---PHLESLVASCNSLT-ELPELPQSLK 114

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
           ++   +++               +               + +  L+  + +S N    ++
Sbjct: 115 SLLVDNNNL------------KAL---------------SDLPPLLEYLGVSNNQLE-KL 146

Query: 409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468
           P E+ N   L+ +++ +N    ++PD      S+E +    NQL  ++P  + NL FL  
Sbjct: 147 P-ELQNSSFLKIIDVDNNSLK-KLPDLPP---SLEFIAAGNNQLE-ELP-ELQNLPFLTA 199

Query: 469 LNLSNNNLNGEIPSSTQLQSFGASS 493
           +   NN+L         L+S  A +
Sbjct: 200 IYADNNSLKKLPDLPLSLESIVAGN 224

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 1e-07
 Identities = 43/256 (16%), Positives = 83/256 (32%), Gaps = 39/256 (15%)

Query: 15  NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLV 74
            +L     L  +   NN +   +P       +LE L++ +N L          +LT L V
Sbjct: 231 PELQNLPFLTTIYADNNLLKT-LPDLPP---SLEALNVRDNYLTDLPELPQ--SLTFLDV 284

Query: 75  FRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKI 134
                + L          P  L +L   S  +     L       L  L++S+ ++  ++
Sbjct: 285 SENIFSGLSEL-------PPNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLI-EL 332

Query: 135 PRGFWNSIFQYDYLNVSGNQIY------GGVPKFDSPSVPLITTPSLLGSIFDLSNNALS 188
           P        + + L  S N +         + +      PL   P +  S+ DL  N+  
Sbjct: 333 P----ALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388

Query: 189 GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG 248
             +  L        +N++ L +  N   E  PD   +   +  L + +         +  
Sbjct: 389 AEVPELP-------QNLKQLHVETNPLRE-FPDIPES---VEDLRMNSERVVDPYEFAHE 437

Query: 249 ALNSLMSLNLRNNRLS 264
             + L      ++   
Sbjct: 438 TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 20/135 (14%)

Query: 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG----- 437
           F+   N     ++      +N + E+PVE  N++       + + +    P   G     
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 438 --------VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQS 488
                   + R    L+ +   LS  +P+   +   L  L  S N+L  E+P     L+S
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKS 115

Query: 489 FGASSFAGNDLCGAP 503
               +     L   P
Sbjct: 116 LLVDNNNLKALSDLP 130

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 92.0 bits (228), Expect = 1e-19
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 79/319 (24%)

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLS---KNHFSEDIPDCWMNWPRLRMLN 233
            + F LS N+   +I        +     E   L    +N     + +C +N  +   L 
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLIN--QFSELQ 65

Query: 234 LGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT 293
           L   N + SLP ++     +  L +  N L   +P    +L   + LD  +N L     +
Sbjct: 66  LNRLNLS-SLPDNLP--PQITVLEITQNALI-SLPELPASL---EYLDACDNRL-----S 113

Query: 294 WIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATT 353
            + E  + L  L++ +N+     P        L+ ++   N L+  +P            
Sbjct: 114 TLPELPASLKHLDVDNNQLT-MLPELP---ALLEYINADNNQLT-MLP------------ 156

Query: 354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT 413
                                                 +L   + +  N  +  +P    
Sbjct: 157 ----------------------------------ELPTSL-EVLSVRNNQLT-FLP---E 177

Query: 414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIES----LDFSANQLSGQIPQSMSNLSFLNYL 469
             + L++L++S NL    +P         E          N+++  IP+++ +L     +
Sbjct: 178 LPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTI 235

Query: 470 NLSNNNLNGEIPSSTQLQS 488
            L +N L+  I  S   Q+
Sbjct: 236 ILEDNPLSSRIRESLSQQT 254

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.9 bits (194), Expect = 2e-15
 Identities = 75/463 (16%), Positives = 144/463 (31%), Gaps = 77/463 (16%)

Query: 36  PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL--NLTQLLVFRAHGNSLVFKINPNWVPP 93
            I L +    +L   +   N ++GT ++         +  +   + N  V          
Sbjct: 2   SIMLPINNNFSLS-QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV---------- 50

Query: 94  FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGN 153
                  L+ C +            +   L ++   +S+ +P      I     L ++ N
Sbjct: 51  -----SLLKECLI-----------NQFSELQLNRLNLSS-LPDNLPPQI---TVLEITQN 90

Query: 154 QIYGGVPKFDSPSVPLITTPSLLGS--IFDLSNNALSGSIFHLICQGENFSKNIEFLKLS 211
                          LI+ P L  S    D  +N LS ++  L         +++ L + 
Sbjct: 91  A--------------LISLPELPASLEYLDACDNRLS-TLPELPA-------SLKHLDVD 128

Query: 212 KNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSF 271
            N  +  +P+       L  +N  NN  T  LP       SL  L++RNN+L+ + P   
Sbjct: 129 NNQLTM-LPELPAL---LEYINADNNQLT-MLPELPT---SLEVLSVRNNQLTFL-PELP 179

Query: 272 RNLSILKALDMGENELVGNIPTWIGETFS---RLMILNLRSNKFHGDFPIQLCRLGSLQI 328
            +L   +ALD+  N L  ++P             +    R N+     P  +  L     
Sbjct: 180 ESL---EALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCT 234

Query: 329 LDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN 388
           + +  N LS  I   ++  +A    D   P      +    N +          +  E  
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQ--PDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENK 292

Query: 389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFS 448
                           +      +  L    S   + + F  ++   +  + +   L   
Sbjct: 293 QSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSAR-NTSGFREQVAAWLEKLSASAELRQQ 351

Query: 449 ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGA 491
           +  ++    +S  +   L + NL    L  +          GA
Sbjct: 352 SFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGA 394

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 77.7 bits (191), Expect = 3e-15
 Identities = 57/289 (19%), Positives = 98/289 (33%), Gaps = 46/289 (15%)

Query: 26  LDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK 85
            +   NT++G            E   L     N  VS +    + Q    + +  +L   
Sbjct: 15  QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLNL--S 72

Query: 86  INPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY 145
             P+ +PP Q+  LE+    L    P    S   L YLD    R+S  +P          
Sbjct: 73  SLPDNLPP-QITVLEITQNALI-SLPELPAS---LEYLDACDNRLST-LP----ELPASL 122

Query: 146 DYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS--IFDLSNNALSGSIFHLICQGENFSK 203
            +L+V  NQ              L   P L       +  NN L+  +  L         
Sbjct: 123 KHLDVDNNQ--------------LTMLPELPALLEYINADNNQLT-MLPELPT------- 160

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL----MSLNLR 259
           ++E L +  N  +  +P+   +   L  L++  N    SLP      +      +    R
Sbjct: 161 SLEVLSVRNNQLTF-LPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
            NR++  IP +  +L     + + +N L   I   + +  ++      R
Sbjct: 216 ENRITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPR 263

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 68.8 bits (168), Expect = 2e-12
 Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 56/306 (18%)

Query: 4   LRRSQFYGHLTNQL------GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKL 57
             +    G   N+               L L+   ++  +P +L     +  L+++ N L
Sbjct: 36  WEKQALPGENRNEAVSLLKECLINQFSELQLNRLNLSS-LPDNLPP--QITVLEITQNAL 92

Query: 58  NGTVSEI--HFLNLTQLLVFRAHGNSLVFKINPNWVP--PFQLAFLELRSCHLGPRFPLW 113
                 +     +L  L    A  N L      + +P  P  L  L++ +  L    P  
Sbjct: 93  ----ISLPELPASLEYL---DACDNRL------STLPELPASLKHLDVDNNQL-TMLPEL 138

Query: 114 LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTP 173
                 L Y++  + +++  +P          + L+V  NQ              L   P
Sbjct: 139 PAL---LEYINADNNQLTM-LP----ELPTSLEVLSVRNNQ--------------LTFLP 176

Query: 174 SLLGS--IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRM 231
            L  S    D+S N L  S+  +  +  +  +   F +  +N  +  IP+  ++      
Sbjct: 177 ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCT 234

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS---GIIPTSFRNLSILKALDMGENELV 288
           + L +N  +  +  S+    +    +      S   G   T  R L+        EN+  
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQS 294

Query: 289 GNIPTW 294
                W
Sbjct: 295 DVSQIW 300

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.3 bits (151), Expect = 2e-10
 Identities = 43/254 (16%), Positives = 82/254 (32%), Gaps = 68/254 (26%)

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET-FS 300
           S+ + I    SL S N   N +SG     F      +   +   E      + + E   +
Sbjct: 2   SIMLPINNNFSL-SQNSFYNTISGTYADYFSAWDKWEKQAL-PGENRNEAVSLLKECLIN 59

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS 360
           +   L L         P  L     + +L++  N+L  ++P                   
Sbjct: 60  QFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLP------------------- 96

Query: 361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQS 420
                                          +L   +D   N  S  +P        L+ 
Sbjct: 97  ---------------------------ELPASL-EYLDACDNRLS-TLPEL---PASLKH 124

Query: 421 LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEI 480
           L++ +N  T  +P+       +E ++   NQL+  +P+  ++L     L++ NN L   +
Sbjct: 125 LDVDNNQLT-MLPELPA---LLEYINADNNQLT-MLPELPTSLE---VLSVRNNQLT-FL 175

Query: 481 PSS-TQLQSFGASS 493
           P     L++   S+
Sbjct: 176 PELPESLEALDVST 189

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 90.3 bits (224), Expect = 4e-19
 Identities = 69/398 (17%), Positives = 126/398 (31%), Gaps = 112/398 (28%)

Query: 95  QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ 154
             A L +    L    P  L +   +  L I    ++  +P        +   L VSGNQ
Sbjct: 41  GNAVLNVGESGL-TTLPDCLPAH--ITTLVIPDNNLT-SLP----ALPPELRTLEVSGNQ 92

Query: 155 IYGGVPKFDSPSVPLITTPSLLGS-----IFDLSNNALSGSIFHLICQGENFSKNIEFLK 209
                         L + P L        IF      L                 +  L 
Sbjct: 93  --------------LTSLPVLPPGLLELSIFSNPLTHLPALP-----------SGLCKLW 127

Query: 210 LSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPT 269
           +  N  +  +P        L+ L++ +N    SLP        L  L   NN+L+ + P 
Sbjct: 128 IFGNQLTS-LPVLPPG---LQELSVSDNQLA-SLPALPS---ELCKLWAYNNQLTSL-PM 178

Query: 270 SFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQIL 329
               L   + L + +N+L  ++PT        L  L   +N+     P        L+ L
Sbjct: 179 LPSGL---QELSVSDNQLA-SLPTLPS----ELYKLWAYNNRLT-SLPALP---SGLKEL 226

Query: 330 DVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNS 389
            V+ N L+ ++P                                                
Sbjct: 227 IVSGNRLT-SLP----------------------------------------------VL 239

Query: 390 ILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA 449
              L + + +S N  +  +P+      GL SL++  N  T R+P+++  + S  +++   
Sbjct: 240 PSEL-KELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293

Query: 450 NQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 487
           N LS +  Q++  ++     +      +    S+ +  
Sbjct: 294 NPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRET 331

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.9 bits (215), Expect = 5e-18
 Identities = 52/292 (17%), Positives = 91/292 (31%), Gaps = 82/292 (28%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
                L + ++  +  +PDC      +  L + +NN T SLP     L +L    +  N+
Sbjct: 40  NGNAVLNVGESGLTT-LPDCLPAH--ITTLVIPDNNLT-SLPALPPELRTL---EVSGNQ 92

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           L+  +P     L  L         L            S L  L +  N+     P+    
Sbjct: 93  LT-SLPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLT-SLPVLP-- 140

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
              LQ L V+ N L+ ++P   +                                     
Sbjct: 141 -PGLQELSVSDNQLA-SLPALPSE------------------------------------ 162

Query: 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442
                      +  +    N  +  +P+  + LQ    L++S N     +P        +
Sbjct: 163 -----------LCKLWAYNNQLT-SLPMLPSGLQ---ELSVSDNQLA-SLPTLPS---EL 203

Query: 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASS 493
             L    N+L+  +P   S L     L +S N L   +P   ++L+    S 
Sbjct: 204 YKLWAYNNRLT-SLPALPSGLK---ELIVSGNRLT-SLPVLPSELKELMVSG 250

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 86.5 bits (214), Expect = 5e-18
 Identities = 61/326 (18%), Positives = 110/326 (33%), Gaps = 60/326 (18%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
              +  L + +N +   +P        L  L++S N+L  ++       L +L +F    
Sbjct: 60  PAHITTLVIPDNNLTS-LPALPP---ELRTLEVSGNQLT-SLPV-LPPGLLELSIFSNPL 113

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
             L     P    P  L  L +    L    P+       L  L +S  +++  +P    
Sbjct: 114 THL-----PAL--PSGLCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLP---- 157

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI--FDLSNNALS------GSI 191
               +   L    NQ              L + P L   +    +S+N L+        +
Sbjct: 158 ALPSELCKLWAYNNQ--------------LTSLPMLPSGLQELSVSDNQLASLPTLPSEL 203

Query: 192 FHLICQGENFSK------NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPM 245
           + L       +        ++ L +S N  +  +P        L+ L +  N  T SLPM
Sbjct: 204 YKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-LPVLPSE---LKELMVSGNRLT-SLPM 258

Query: 246 SIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE-TFSRLMI 304
                  L+SL++  N+L+  +P S  +LS    +++  N L       + E T +    
Sbjct: 259 LPS---GLLSLSVYRNQLTR-LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYS 314

Query: 305 LNLRSNKFHGDFPIQLCRLGSLQILD 330
             +      G    +  R   L   D
Sbjct: 315 GPIIRFDMAGASAPRETRALHLAAAD 340

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 63/303 (20%), Positives = 104/303 (34%), Gaps = 63/303 (20%)

Query: 46  NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCH 105
               L++  + L  T+ +    ++T L++     N+L   +      P +L  LE+    
Sbjct: 41  GNAVLNVGESGLT-TLPDCLPAHITTLVI---PDNNLT-SLPAL---PPELRTLEVSGNQ 92

Query: 106 LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP 165
           L    P+      +L       T + A +P G          L + GNQ           
Sbjct: 93  L-TSLPVLPPGLLELSIFSNPLTHLPA-LPSGL-------CKLWIFGNQ----------- 132

Query: 166 SVPLITTPSLLGSI--FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223
              L + P L   +    +S+N L+ S+  L          +  L    N  +  +P   
Sbjct: 133 ---LTSLPVLPPGLQELSVSDNQLA-SLPALPS-------ELCKLWAYNNQLTS-LPM-- 178

Query: 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
                L+ L++ +N    SLP        L  L   NNRL+  +P        LK L + 
Sbjct: 179 -LPSGLQELSVSDNQLA-SLPTLPS---ELYKLWAYNNRLTS-LPALPSG---LKELIVS 229

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
            N L     T +    S L  L +  N+     P        L  L V  N L+  +P  
Sbjct: 230 GNRL-----TSLPVLPSELKELMVSGNRL-TSLP---MLPSGLLSLSVYRNQLT-RLPES 279

Query: 344 INN 346
           + +
Sbjct: 280 LIH 282

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 16/96 (16%), Positives = 37/96 (38%), Gaps = 8/96 (8%)

Query: 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 450
            N    +++ ++  +  +P  +     + +L +  N  T  +P        + +L+ S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 451 QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL 486
           QL+  +P     L  L+  +    +L        +L
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHLPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 31/172 (18%), Positives = 60/172 (34%), Gaps = 41/172 (23%)

Query: 318 IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDAL 377
           ++ C      +L+V  + L+ T+P C+   + + T    D            N +     
Sbjct: 34  MRACLNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPD------------NNLTSLP- 77

Query: 378 LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG 437
                          L R++++S N  +  +PV    L  L   +         +P    
Sbjct: 78  ----------ALPPEL-RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLT----HLPALPS 121

Query: 438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQS 488
               +  L    NQL+  +P     L     L++S+N L   +P+  ++L  
Sbjct: 122 ---GLCKLWIFGNQLT-SLPVLPPGLQ---ELSVSDNQLA-SLPALPSELCK 165

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 48.4 bits (115), Expect = 6e-06
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 415 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNN 474
             G   LN+  +  T  +PD +     I +L    N L+  +P     L     L +S N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 475 NLNGEIPSS-TQLQSFGASSFAGNDL 499
            L   +P     L      S     L
Sbjct: 92  QLT-SLPVLPPGLLELSIFSNPLTHL 116

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 54/306 (17%), Positives = 104/306 (33%), Gaps = 31/306 (10%)

Query: 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW--PRLRMLNLGNNNF 239
              N          C   N   +  F  +  +  ++D+   + +      +++   N+  
Sbjct: 5   QRYNVKP-RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM 63

Query: 240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
                  + +   +  LNL + ++  I   +F     ++ L MG N +   +P  + +  
Sbjct: 64  RKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNV 122

Query: 300 SRLMILNLRSNKFHGDFPIQL-CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP 358
             L +L L  N      P  +      L  L ++ N+L           +++     S  
Sbjct: 123 PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS-- 179

Query: 359 NSGIFYASSGDNEI--VEDALLVTKGFL-VEYNSILNL-----VRSIDISKNNFSGEIPV 410
                      N +  V+ +L+ +     V YN +  L     V  +D S N+ +  +  
Sbjct: 180 ----------SNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSIN-VVRG 228

Query: 411 EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN 470
            V     L  L L HN  T      +     +  +D S N+L   +      +  L  L 
Sbjct: 229 PV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY 284

Query: 471 LSNNNL 476
           +SNN L
Sbjct: 285 ISNNRL 290

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 88.8 bits (220), Expect = 1e-18
 Identities = 79/478 (16%), Positives = 157/478 (32%), Gaps = 58/478 (12%)

Query: 19  RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH 78
                + +   N+T+       L     +E L+L++ ++   +    F     +      
Sbjct: 49  TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMG 107

Query: 79  GNSLVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRG 137
            N++   + P+       L  L L    L         +  KL  L +S+  +  +I   
Sbjct: 108 FNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDD 165

Query: 138 FWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQ 197
            + +      L +S N++           V L   PSL     ++S N LS ++   I  
Sbjct: 166 TFQATTSLQNLQLSSNRL---------THVDLSLIPSL--FHANVSYNLLS-TLAIPI-- 211

Query: 198 GENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257
                  +E L  S N  +  +         L +L L +NN T      +     L+ ++
Sbjct: 212 ------AVEELDASHNSINV-VRGPVN--VELTILKLQHNNLT-DTA-WLLNYPGLVEVD 260

Query: 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP 317
           L  N L  I+   F  +  L+ L +  N LV  +  +       L +L+L  N       
Sbjct: 261 LSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVE 317

Query: 318 IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDAL 377
               +   L+ L + +NS+  T+   ++    +     S             N+   ++L
Sbjct: 318 RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS------------HNDWDCNSL 362

Query: 378 L-----VTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432
                 V +  + + +    +   ++        + P     LQ +   ++   +   R 
Sbjct: 363 RALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKV--QRA 420

Query: 433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL----NYLNLSNNNLNGEIPSSTQL 486
                   +I S+   ++ ++ Q    +     L    N L      L  E     QL
Sbjct: 421 QGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRAEVQQLTNEQIQQEQL 478

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 87.3 bits (216), Expect = 3e-18
 Identities = 54/329 (16%), Positives = 113/329 (34%), Gaps = 32/329 (9%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
               + +   T +         + N + +   N+ +   +      +  Q+ +   +   
Sbjct: 28  VFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQ 86

Query: 82  LVFKINPNWVPPF-QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
           +  +I+         +  L +    +    P   Q+   L  L +    +S+ +PRG ++
Sbjct: 87  IE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS-LPRGIFH 144

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
           +  +   L++S N +                T SL      LS+N L+     LI     
Sbjct: 145 NTPKLTTLSMSNNNLE------RIEDDTFQATTSL--QNLQLSSNRLTHVDLSLI----- 191

Query: 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
              ++    +S N  S  +         +  L+  +N+    +         L  L L++
Sbjct: 192 --PSLFHANVSYNLLST-LAIP----IAVEELDASHNSIN-VVR--GPVNVELTILKLQH 241

Query: 261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL 320
           N L+        N   L  +D+  NEL   I         RL  L + +N+      +  
Sbjct: 242 NNLTDT--AWLLNYPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297

Query: 321 CRLGSLQILDVAYNSLSGTIPRCINNFSA 349
             + +L++LD+++N L   + R    F  
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDR 325

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 88.0 bits (218), Expect = 1e-18
 Identities = 74/469 (15%), Positives = 162/469 (34%), Gaps = 40/469 (8%)

Query: 18  GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRA 77
              +    L++S N ++      +  ++ L  L +S+N++   +    F    +L     
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDL 76

Query: 78  HGNSLVFKINPNWVPPFQ---LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKI 134
             N LV KI+ +     +   L+F    +  +   F     +  +L +L +S+T +    
Sbjct: 77  SHNKLV-KISCHPTVNLKHLDLSFNAFDALPICKEF----GNMSQLKFLGLSTTHLEKSS 131

Query: 135 PRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPL-ITTPSLLGSIFDLSNNALSGSIFH 193
                +       L +         P+         +         F    +    ++ +
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVAN 191

Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL 253
           L                  +  ++   +  ++   L  +    N+F   L +      ++
Sbjct: 192 LELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV--WHTTV 249

Query: 254 MSLNLRNNRLSGII-----PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
              ++ N +L G +       S  +L  L    +  +   G   ++I E FS + I N  
Sbjct: 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFT 308

Query: 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSG 368
            +       +   ++     LD + N L+ T+     N   +   +              
Sbjct: 309 VSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF---ENCGHLTELE-------TLILQMN 358

Query: 369 DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNL 427
             + +     +T          +  ++ +DIS+N+ S +      +  + L SLN+S N+
Sbjct: 359 QLKELSKIAEMTTQ--------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410

Query: 428 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            T  I   +     I+ LD  +N++   IP+ +  L  L  LN+++N L
Sbjct: 411 LTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 67/359 (18%), Positives = 123/359 (34%), Gaps = 39/359 (10%)

Query: 15  NQL-----GRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLN 68
           N+L          L+ LDLS N  +  PI    G ++ L++L LS   L    S +   +
Sbjct: 79  NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAH 137

Query: 69  LTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
           L    V    G +   K +P  +  F    L +          +   S K +  L++S+ 
Sbjct: 138 LNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNI 197

Query: 129 RIS-------------AKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSV------PL 169
           +               AK+      S    + +  + N     +      +V       +
Sbjct: 198 KCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNV 257

Query: 170 ITTPSLLGSIFDLSNNAL-SGSIFHLICQGENFSKNIEFLKLSK--------NHFSEDIP 220
                L    FD S  +L + SI  ++     F ++  +   S         +       
Sbjct: 258 KLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHM 317

Query: 221 DCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTS--FRNLSILK 278
            C         L+  NN  T ++  + G L  L +L L+ N+L  +   +     +  L+
Sbjct: 318 LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ 377

Query: 279 ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
            LD+ +N +  +           L+ LN+ SN         L     +++LD+  N + 
Sbjct: 378 QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 75.3 bits (185), Expect = 2e-14
 Identities = 54/283 (19%), Positives = 106/283 (37%), Gaps = 19/283 (6%)

Query: 7   SQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG----TVS 62
           S      TN      TL  ++ + N+      L L     + Y  +SN KL G       
Sbjct: 211 SILAKLQTNPKLSNLTLNNIETTWNSFIRI--LQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 63  EIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY 122
           +    +L  L + +   +   F  +  +     +               L         +
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL 182
           LD S+  ++          + + + L +  NQ+   + K    +  + +   L     D+
Sbjct: 329 LDFSNNLLTD-TVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQL-----DI 381

Query: 183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS 242
           S N++S       C     +K++  L +S N  ++ I  C    PR+++L+L +N    S
Sbjct: 382 SQNSVSYDEKKGDCSW---TKSLLSLNMSSNILTDTIFRC--LPPRIKVLDLHSNKIK-S 435

Query: 243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
           +P  +  L +L  LN+ +N+L  +    F  L+ L+ + +  N
Sbjct: 436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 65.7 bits (160), Expect = 2e-11
 Identities = 68/393 (17%), Positives = 127/393 (32%), Gaps = 53/393 (13%)

Query: 122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYG---GVPKFDSPSVPLITTPSLLGS 178
            L+IS   IS ++      S+ +   L +S N+I      V  F            L   
Sbjct: 25  ILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISV--FKF-------NQEL--E 72

Query: 179 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM--NWPRLRMLNLGN 236
             DLS+N L     H          N++ L LS N F   +P C    N  +L+ L L  
Sbjct: 73  YLDLSHNKLVKISCHPT-------VNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLST 124

Query: 237 NNFTGSLPMSIGALNSL-MSLNLRNNRLSGIIPTSFRNLSILK-ALDMGENELVGNIPTW 294
            +   S  + I  LN   + L L         P   ++ +     +    N+    I   
Sbjct: 125 THLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDV 184

Query: 295 IGETFSRLMILNLRSNKFHG------DFPIQLCRLGSLQILDVAYNSLSGT-IPRCINNF 347
             +T + L + N++                +L     L  L +     +     R +   
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLV 244

Query: 348 SAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNL-------------V 394
                   S  N  +       +       L         + +                +
Sbjct: 245 WHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNI 304

Query: 395 RSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453
           ++  +S       + +   + +     L+ S+NL T  + +N G +  +E+L    NQL 
Sbjct: 305 KNFTVSGTRM---VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

Query: 454 --GQIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
              +I +  + +  L  L++S N+++ +     
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGD 394

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 49/289 (16%), Positives = 98/289 (33%), Gaps = 28/289 (9%)

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
           + S+    L +S+N+ SE      ++  +LR+L + +N               L  L+L 
Sbjct: 18  DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLS 77

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS---RLMILNLRSNKFHGDF 316
           +N+L  I   S      LK LD+  N     +P  I + F    +L  L L +       
Sbjct: 78  HNKLVKI---SCHPTVNLKHLDLSFNAF-DALP--ICKEFGNMSQLKFLGLSTTHLEKSS 131

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376
            + +  L   ++L V   +                +     P +  F             
Sbjct: 132 VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF-----------HF 180

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436
           +L      V    + N+   ++ +K ++   I  ++     L +L L++   T      I
Sbjct: 181 ILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRI 240

Query: 437 GVM---RSIESLDFSANQLSGQIPQSMSNLSF-----LNYLNLSNNNLN 477
             +    ++     S  +L GQ+     + S      L+   + ++   
Sbjct: 241 LQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFG 289

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 61.0 bits (148), Expect = 5e-10
 Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 46/240 (19%)

Query: 4   LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE 63
           +    F    +     F  +   + + +       L   +I+   +LD SNN L  TV E
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFE 342

Query: 64  IHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYL 123
               +LT+L       N L        +        ++                K L  L
Sbjct: 343 N-CGHLTELETLILQMNQL------KELSKIAEMTTQM----------------KSLQQL 379

Query: 124 DISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS 183
           DIS   +S    +G  +       LN+S N +   +  F      +         + DL 
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--FRCLPPRI--------KVLDLH 429

Query: 184 NN---ALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW-MNWPRLRMLNLGNNNF 239
           +N   ++   +  L        + ++ L ++ N     +PD        L+ + L  N +
Sbjct: 430 SNKIKSIPKQVVKL--------EALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPW 480

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.4 bits (212), Expect = 3e-18
 Identities = 58/302 (19%), Positives = 103/302 (34%), Gaps = 32/302 (10%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
                 LDL NN +          + NL  L L NNK++  +S   F  L +L       
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSK 109

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI-SAKIPRGF 138
           N L  ++ P  +P   L  L +    +            ++  +++ +  + S+ I  G 
Sbjct: 110 NQLK-EL-PEKMPK-TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 166

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           +  + +  Y+ ++   I          ++P    PSL  +   L  N ++  +       
Sbjct: 167 FQGMKKLSYIRIADTNI---------TTIPQGLPPSL--TELHLDGNKIT-KV-----DA 209

Query: 199 ENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
            +     N+  L LS N  S        N P LR L+L NN     +P  +     +  +
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 268

Query: 257 NLRNNRLSGIIPTSFR------NLSILKALDMGENEL-VGNIPTWIGETFSRLMILNLRS 309
            L NN +S I    F         +    + +  N +    I             + L +
Sbjct: 269 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGN 328

Query: 310 NK 311
            K
Sbjct: 329 YK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 84.3 bits (209), Expect = 6e-18
 Identities = 57/315 (18%), Positives = 109/315 (34%), Gaps = 69/315 (21%)

Query: 181 DLSNNALSGSIFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
           DL NN ++  I     +  +F   KN+  L L  N  S+  P  +    +L  L L  N 
Sbjct: 58  DLQNNKIT-EI-----KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL-VGNIPTWIGE 297
               LP       +L  L +  N ++ +  + F  L+ +  +++G N L    I     +
Sbjct: 112 LK-ELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 298 TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357
              +L  + +         P  L    SL  L +  N ++                    
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-------------------- 205

Query: 358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQ 416
                        ++   +L             LN +  + +S N+ S  +      N  
Sbjct: 206 -------------KVDAASL-----------KGLNNLAKLGLSFNSIS-AVDNGSLANTP 240

Query: 417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG------QIPQSMSNLSFLNYLN 470
            L+ L+L++N    ++P  +   + I+ +    N +S         P   +  +  + ++
Sbjct: 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVS 299

Query: 471 LSNNNLN-GEIPSST 484
           L +N +   EI  ST
Sbjct: 300 LFSNPVQYWEIQPST 314

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 82.4 bits (204), Expect = 2e-17
 Identities = 54/251 (21%), Positives = 91/251 (36%), Gaps = 51/251 (20%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
           P   +L+L NN  T         L +L +L L NN++S I P +F  L  L+ L + +N+
Sbjct: 52  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           L   +P    +    L  L +  N+           L  + ++++  N L          
Sbjct: 112 LK-ELPE---KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK--------- 158

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
                   SS   +G F                           +  +  I I+  N + 
Sbjct: 159 --------SSGIENGAFQG-------------------------MKKLSYIRIADTNIT- 184

Query: 407 EIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSF 465
            IP  +     L  L+L  N  T ++       + ++  L  S N +S     S++N   
Sbjct: 185 TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 241

Query: 466 LNYLNLSNNNL 476
           L  L+L+NN L
Sbjct: 242 LRELHLNNNKL 252

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 58.9 bits (143), Expect = 1e-09
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 47/258 (18%)

Query: 15  NQL-----GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKL-NGTVSEIHFLN 68
           NQL        KTL+ L +  N +          +  +  ++L  N L +  +    F  
Sbjct: 110 NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQG 169

Query: 69  LTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST 128
           + +L   R    ++   I P  +PP  L  L L    +       L+    L  L +S  
Sbjct: 170 MKKLSYIRIADTNIT-TI-PQGLPP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 129 RISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVP--LITTPSLLGSIFDLSNNA 186
            IS  +  G   +      L+++ N++           VP  L     +   +  L NN 
Sbjct: 227 SIS-AVDNGSLANTPHLRELHLNNNKLV---------KVPGGLADHKYI--QVVYLHNNN 274

Query: 187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSL--P 244
           +S                     +  N F    P           ++L +N        P
Sbjct: 275 IS--------------------AIGSNDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQP 312

Query: 245 MSIGALNSLMSLNLRNNR 262
            +   +    ++ L N +
Sbjct: 313 STFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 22/117 (18%), Positives = 47/117 (40%), Gaps = 20/117 (17%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQL- 452
             + +SKN    E+P ++   + LQ L +  N  T ++  ++   +  +  ++   N L 
Sbjct: 103 ERLYLSKNQLK-ELPEKM--PKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLK 158

Query: 453 SGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSST------------QLQSFGASSFAG 496
           S  I       +  L+Y+ +++ N+   IP               ++    A+S  G
Sbjct: 159 SSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKG 214

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.1 bits (97), Expect = 6e-04
 Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
           R +  S      ++P ++        L+L +N  T     +   ++++ +L    N++S 
Sbjct: 34  RVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 90

Query: 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
             P + + L  L  L LS N L  E+P   
Sbjct: 91  ISPGAFAPLVKLERLYLSKNQLK-ELPEKM 119

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.8 bits (205), Expect = 1e-17
 Identities = 56/284 (19%), Positives = 99/284 (34%), Gaps = 51/284 (17%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT--GSLPMSIGALNSLMSL 256
                +   L+L  N         +    +L  L+L +N  +  G    S     SL  L
Sbjct: 24  TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYL 83

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF 316
           +L  N +   + ++F  L  L+ LD   + L       +  +   L+ L++        F
Sbjct: 84  DLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376
                 L SL++L +A NS         + F+ +                          
Sbjct: 143 NGIFNGLSSLEVLKMAGNSFQENFLP--DIFTELR------------------------- 175

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDN 435
                          NL   +D+S+     ++      +L  LQ LN+SHN F   +   
Sbjct: 176 ---------------NL-TFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFF-SLDTF 217

Query: 436 I-GVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLN 477
               + S++ LD+S N +     Q + +  S L +LNL+ N+  
Sbjct: 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 56/309 (18%), Positives = 96/309 (31%), Gaps = 68/309 (22%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN-GTVSEIHFLNLTQLLVFRAH 78
             +   L+L +N +         ++  L  L LS+N L+            T L      
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86

Query: 79  GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
            N ++       +      FL L                  L +LD   + +        
Sbjct: 87  FNGVIT------MSS---NFLGLEQ----------------LEHLDFQHSNLKQMSEFSV 121

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           + S+    YL++S                                N   +G         
Sbjct: 122 FLSLRNLIYLDISHTHTR------------------------VAFNGIFNGL-------- 149

Query: 199 ENFSKNIEFLKLSKNHFSEDI-PDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN 257
                ++E LK++ N F E+  PD +     L  L+L         P +  +L+SL  LN
Sbjct: 150 ----SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP 317
           + +N    +    ++ L+ L+ LD   N ++ +    +    S L  LNL  N F     
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT-- 263

Query: 318 IQLCRLGSL 326
              C   S 
Sbjct: 264 ---CEHQSF 269

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 72.7 bits (179), Expect = 3e-14
 Identities = 50/249 (20%), Positives = 84/249 (33%), Gaps = 51/249 (20%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL-VGN 290
           +   +   T S+P  I   +S   L L +N+L  +    F  L+ L  L +  N L    
Sbjct: 12  IRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 291 IPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAM 350
             +      + L  L+L  N            L  L+ LD  +++L              
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK------------- 114

Query: 351 ATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV 410
                      +F +                         L  +  +DIS  +       
Sbjct: 115 -----QMSEFSVFLS-------------------------LRNLIYLDISHTHTR-VAFN 143

Query: 411 EV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468
            +   L  L+ L ++ N F      +I   +R++  LD S  QL    P + ++LS L  
Sbjct: 144 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 203

Query: 469 LNLSNNNLN 477
           LN+S+NN  
Sbjct: 204 LNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 71.6 bits (176), Expect = 8e-14
 Identities = 38/159 (23%), Positives = 67/159 (42%), Gaps = 6/159 (3%)

Query: 181 DLSNNALSGSIFHLICQGENFS-KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF 239
            LS+N LS   F   C   +F   ++++L LS N     +   ++   +L  L+  ++N 
Sbjct: 58  SLSSNGLS---FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNL 113

Query: 240 TGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET 298
                 S+  +L +L+ L++ +          F  LS L+ L M  N    N    I   
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
              L  L+L   +     P     L SLQ+L++++N+  
Sbjct: 174 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 60/288 (20%), Positives = 98/288 (34%), Gaps = 64/288 (22%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNN--TVNGPIPLSLGQIANLEYLDLSNNKLN 58
            L L  ++          +   L  L LS+N  +  G    S     +L+YLDLS N + 
Sbjct: 32  RLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGV- 90

Query: 59  GTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQK 118
                 +FL L QL       ++L      +        FL LR+               
Sbjct: 91  -ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS-------VFLSLRN--------------- 127

Query: 119 KLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGS 178
            L YLDIS T        G +N +   + L ++GN                         
Sbjct: 128 -LIYLDISHTHTRV-AFNGIFNGLSSLEVLKMAGNSF----------------------- 162

Query: 179 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
             +   +  +              +N+ FL LS+    +  P  + +   L++LN+ +NN
Sbjct: 163 QENFLPDIFTE------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN 210

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNL-SILKALDMGEN 285
           F          LNSL  L+   N +        ++  S L  L++ +N
Sbjct: 211 FFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 68.1 bits (167), Expect = 9e-13
 Identities = 46/225 (20%), Positives = 85/225 (37%), Gaps = 16/225 (7%)

Query: 120 LYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI 179
              L++ S ++   +P G ++ + Q   L++S N +          S     T SL    
Sbjct: 30  ATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS----FKGCCSQSDFGTTSL--KY 82

Query: 180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW-MNWPRLRMLNLGNNN 238
            DLS N +       +       + +E L    ++  +       ++   L  L++ + +
Sbjct: 83  LDLSFNGVIT-----MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 239 FTGSLPMSIGALNSLMSLNLRNNR-LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
              +       L+SL  L +  N      +P  F  L  L  LD+ + +L   +      
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFN 196

Query: 298 TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
           + S L +LN+  N F          L SLQ+LD + N +  T  +
Sbjct: 197 SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKK 240

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 52/266 (19%), Positives = 94/266 (35%), Gaps = 44/266 (16%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
           P   +L+L NN+ +         L  L +L L NN++S I   +F  L  L+ L + +N 
Sbjct: 54  PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           LV  IP       S L+ L +  N+           L ++  +++  N L          
Sbjct: 114 LV-EIPP---NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE--------- 160

Query: 347 FSAMATTDSSDPNSGIFYASS------GDNEIVEDALLVTKGFLVEYNSILNLVRSIDIS 400
                   +S    G F           + ++            +  +    L   + + 
Sbjct: 161 --------NSGFEPGAFDGLKLNYLRISEAKLTG----------IPKDLPETL-NELHLD 201

Query: 401 KNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQ 458
            N     I +E       L  L L HN     I +     + ++  L    N+LS ++P 
Sbjct: 202 HNKIQ-AIELEDLLRYSKLYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS-RVPA 258

Query: 459 SMSNLSFLNYLNLSNNNLNGEIPSST 484
            + +L  L  + L  NN+  ++  + 
Sbjct: 259 GLPDLKLLQVVYLHTNNIT-KVGVND 283

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 52/318 (16%), Positives = 112/318 (35%), Gaps = 76/318 (23%)

Query: 181 DLSNNALSGSIFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN 238
           DL NN +S  +     + ++F   +++  L L  N  S+     +    +L+ L +  N+
Sbjct: 60  DLQNNDIS-EL-----RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE- 297
               +P      +SL+ L + +NR+  +    F  L  +  ++MG N L     +     
Sbjct: 114 LV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE---NSGFEPG 167

Query: 298 TFS--RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDS 355
            F   +L  L +   K  G   I      +L  L + +N +                   
Sbjct: 168 AFDGLKLNYLRISEAKLTG---IPKDLPETLNELHLDHNKIQ------------------ 206

Query: 356 SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TN 414
                           I  + L              + +  + +  N     I     + 
Sbjct: 207 ---------------AIELEDL-----------LRYSKLYRLGLGHNQIR-MIENGSLSF 239

Query: 415 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSM-------SNLSFLN 467
           L  L+ L+L +N  + R+P  +  ++ ++ +    N ++ ++  +           ++ N
Sbjct: 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYN 297

Query: 468 YLNLSNNNL-NGEIPSST 484
            ++L NN +   E+  +T
Sbjct: 298 GISLFNNPVPYWEVQPAT 315

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 77.4 bits (191), Expect = 1e-15
 Identities = 50/304 (16%), Positives = 102/304 (33%), Gaps = 37/304 (12%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
                 LDL NN ++         + +L  L L NNK++  + E  F  L +L       
Sbjct: 53  SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISK 111

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI-SAKIPRGF 138
           N LV +I PN +P   L  L +    +           + +  +++    + ++    G 
Sbjct: 112 NHLV-EIPPN-LPS-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGA 168

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS----GSIFHL 194
           ++ + + +YL +S  ++           +P     +L  +   L +N +       +   
Sbjct: 169 FDGL-KLNYLRISEAKL---------TGIPKDLPETL--NELHLDHNKIQAIELEDLLRY 216

Query: 195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM 254
                     +  L L  N             P LR L+L NN  +  +P  +  L  L 
Sbjct: 217 --------SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 255 SLNLRNNRLSGIIPTSFRNLSI------LKALDMGENEL-VGNIPTWIGETFSRLMILNL 307
            + L  N ++ +    F  +           + +  N +    +        +  + +  
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

Query: 308 RSNK 311
            + K
Sbjct: 328 GNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.8 bits (135), Expect = 1e-08
 Identities = 42/285 (14%), Positives = 79/285 (27%), Gaps = 80/285 (28%)

Query: 15  NQL-----GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNL 69
           N L         +L  L + +N +          + N+  +++  N L  +  E    + 
Sbjct: 112 NHLVEIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDG 171

Query: 70  TQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR 129
            +L   R     L                       +    P      + L  L +   +
Sbjct: 172 LKLNYLRISEAKLT---------------------GIPKDLP------ETLNELHLDHNK 204

Query: 130 ISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG 189
           I   I         +   L +  NQI                          + N +LS 
Sbjct: 205 IQ-AIELEDLLRYSKLYRLGLGHNQIR------------------------MIENGSLSF 239

Query: 190 SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-- 247
                          +  L L  N  S  +P    +   L+++ L  NN T  + ++   
Sbjct: 240 ------------LPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGVNDFC 285

Query: 248 -----GALNSLMSLNLRNNRLS--GIIPTSFRNLSILKALDMGEN 285
                        ++L NN +    + P +FR ++   A+  G  
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 44/258 (17%), Positives = 77/258 (29%), Gaps = 82/258 (31%)

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
           LR++   +     ++P  I        L+L+NN +S +    F+ L  L AL +  N+  
Sbjct: 35  LRVVQCSDLGLK-AVPKEISP--DTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-- 89

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
                          I  +    F          L  LQ L ++ N L   IP       
Sbjct: 90  ---------------ISKIHEKAFSP--------LRKLQKLYISKNHLV-EIP------- 118

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
                        +                             +L   + I  N    ++
Sbjct: 119 -----------PNLP---------------------------SSL-VELRIHDNRIR-KV 138

Query: 409 PVEV-TNLQGLQSLNLSHN-LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL 466
           P  V + L+ +  + +  N L              +  L  S  +L+  IP+ +     L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETL 195

Query: 467 NYLNLSNNNLNGEIPSST 484
           N L+L +N +   I    
Sbjct: 196 NELHLDHNKIQ-AIELED 212

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.6 bits (196), Expect = 2e-16
 Identities = 50/251 (19%), Positives = 84/251 (33%), Gaps = 18/251 (7%)

Query: 97  AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF--WNSIFQYDYLNVSGNQ 154
             L+             +     L  L + + RI ++I  G      I     L +   +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 155 IYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNH 214
           + G  P    P +   T P L  +I +L N + +     L    +     ++ L +++ H
Sbjct: 107 VTGTAP----PPLLEATGPDL--NILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH 160

Query: 215 FSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI----GALNSLMSLNLRNNR---LSGII 267
                 +    +P L  L+L +N   G   +          +L  L LRN      SG+ 
Sbjct: 161 SLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 268 PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ 327
                    L+ LD+  N L         +  S+L  LNL                  L 
Sbjct: 221 SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLS 277

Query: 328 ILDVAYNSLSG 338
           +LD++YN L  
Sbjct: 278 VLDLSYNRLDR 288

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.0 bits (192), Expect = 6e-16
 Identities = 52/290 (17%), Positives = 83/290 (28%), Gaps = 67/290 (23%)

Query: 204 NIEFLKLSKNHFSEDIPDC---WMNWPRLRMLNLGNNNFTGSLPMSIGAL--NSLMSLNL 258
           +++ L +        I       +    L+ L L N   TG+ P  +       L  LNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 259 RNNRLSGI--IPTSFRNLSI--LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG 314
           RN   +         +      LK L + +     N        F  L  L+L  N   G
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHS-LNFSCEQVRVFPALSTLDLSDNPELG 187

Query: 315 DFP----IQLCRLGSLQILDVAYN---SLSGTIPRCINNFSAMATTDSSDPNSGIFYASS 367
           +      +   +  +LQ+L +      + SG                             
Sbjct: 188 ERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV------------------- 228

Query: 368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHN 426
                                    L + +D+S N+               L SLNLS  
Sbjct: 229 ------------------------QL-QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT 263

Query: 427 LFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
               ++P  +     +  LD S N+L    P S   L  +  L+L  N  
Sbjct: 264 GLK-QVPKGLP--AKLSVLDLSYNRLDR-NP-SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 76.5 bits (188), Expect = 2e-15
 Identities = 45/259 (17%), Positives = 81/259 (31%), Gaps = 32/259 (12%)

Query: 22  TLRALDLSNNTVNGPIP---LSLGQIANLEYLDLSNNKLNGTV-SEIHFLNLTQLLVFRA 77
           +L+ L +    +   I    L +  I+ L+ L L N ++ GT    +       L +   
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 78  HGNSLVFKINPNWVPPFQ------LAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRIS 131
              S        W+   Q      L  L +   H        ++    L  LD+S     
Sbjct: 129 RNVSWA--TRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186

Query: 132 AKIPRGFWNSIFQYD-----YLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNA 186
            +      +++          L +    +             L      L    DLS+N+
Sbjct: 187 GERG--LISALCPLKFPTLQVLALRNAGM----ETPSGVCSALAAARVQL-QGLDLSHNS 239

Query: 187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMS 246
           L  +     C    +   +  L LS     + +P       +L +L+L  N      P S
Sbjct: 240 LRDAAGAPSCD---WPSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLD-RNP-S 291

Query: 247 IGALNSLMSLNLRNNRLSG 265
              L  + +L+L+ N    
Sbjct: 292 PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.4 bits (180), Expect = 2e-14
 Identities = 45/273 (16%), Positives = 83/273 (30%), Gaps = 20/273 (7%)

Query: 26  LDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNG--TVSEIHFLNLTQLLVFRAHGNSLV 83
           L   +   +      + +  +L+ L +   ++        +  L ++ L         + 
Sbjct: 49  LKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVT 108

Query: 84  FKINPNWVPPF--QLAFLELRSCHLGPRFPLWLQSQ----KKLYYLDISSTRISAKIPRG 137
               P  +      L  L LR+     R     + Q      L  L I+           
Sbjct: 109 GTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLN-FSCE 167

Query: 138 FWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQ 197
                     L++S N   G        ++  +  P+L   +  L N  +  +   +   
Sbjct: 168 QVRVFPALSTLDLSDNPELGERGL--ISALCPLKFPTL--QVLALRNAGME-TPSGVCSA 222

Query: 198 GENFSKNIEFLKLSKNHFSEDIPDCWMNWP-RLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
                  ++ L LS N   +       +WP +L  LNL        +P  + A   L  L
Sbjct: 223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPA--KLSVL 279

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           +L  NRL      S   L  +  L +  N  + 
Sbjct: 280 DLSYNRLDRN--PSPDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.5 bits (170), Expect = 4e-13
 Identities = 56/246 (22%), Positives = 89/246 (36%), Gaps = 26/246 (10%)

Query: 252 SLMSLNLRNNRLSGIIPTS---FRNLSILKALDMGENELVGNIPTWIGE-TFSRLMILNL 307
           SL  L +R  R+   I         +S L+ L +   E+ G  P  + E T   L ILNL
Sbjct: 69  SLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNL 128

Query: 308 RSNKFHGDFP----IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF 363
           R+  +         +Q      L++L +A           +  F A++T D SD      
Sbjct: 129 RNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD------ 182

Query: 364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL 423
                 N  + +  L++    +++ ++  L    +      SG           LQ L+L
Sbjct: 183 ------NPELGERGLISALCPLKFPTLQVLALR-NAGMETPSGVCSALAAARVQLQGLDL 235

Query: 424 SHNLFTGRIPDNIGV-MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS 482
           SHN                + SL+ S   L        + LS    L+LS N L+   PS
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLS---VLDLSYNRLD-RNPS 291

Query: 483 STQLQS 488
             +L  
Sbjct: 292 PDELPQ 297

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 68.0 bits (166), Expect = 1e-12
 Identities = 45/262 (17%), Positives = 78/262 (29%), Gaps = 37/262 (14%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS--EDIPDCWMNWPRLRMLNLGNNN 238
            +    +   I     +    S  ++ L L     +     P      P L +LNL N +
Sbjct: 74  TVRAARIPSRILFGALRVLGISG-LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132

Query: 239 FTGSLP----MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP-- 292
           +         +       L  L++             R    L  LD+ +N  +G     
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192

Query: 293 -TWIGETFSRLMILNLRSNKFH---GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
                  F  L +L LR+       G           LQ LD+++NSL         ++ 
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
           +   +            S     + +    V KG       +   +  +D+S N      
Sbjct: 253 SQLNS---------LNLSF--TGLKQ----VPKG-------LPAKLSVLDLSYNRLD-RN 289

Query: 409 PVEVTNLQGLQSLNLSHNLFTG 430
           P     L  + +L+L  N F  
Sbjct: 290 PSP-DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 61.5 bits (149), Expect = 2e-10
 Identities = 46/266 (17%), Positives = 71/266 (26%), Gaps = 24/266 (9%)

Query: 222 CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281
           C  + P+    +  N      + +  G  +    L   +        T       LK L 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLT 74

Query: 282 MGENELVGNIPTWIGE--TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT 339
           +    +   I          S L  L L + +  G  P  L       +  +   ++S  
Sbjct: 75  VRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-- 132

Query: 340 IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI 399
                    A           G+   S                F  E   +   + ++D+
Sbjct: 133 ----WATRDAWLAELQQWLKPGLKVLSIAQAHS--------LNFSCEQVRVFPALSTLDL 180

Query: 400 SKNNFSGEIPVEVT----NLQGLQSLNLSHNLFT---GRIPDNIGVMRSIESLDFSANQL 452
           S N   GE  +           LQ L L +       G           ++ LD S N L
Sbjct: 181 SDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSL 240

Query: 453 SGQIPQSM-SNLSFLNYLNLSNNNLN 477
                       S LN LNLS   L 
Sbjct: 241 RDAAGAPSCDWPSQLNSLNLSFTGLK 266

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 17  LGRFKTLRALDLSNN---TVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLL 73
             +F TL+ L L N    T +G           L+ LDLS+N L            +QL 
Sbjct: 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLN 256

Query: 74  VFRAHGNSL 82
                   L
Sbjct: 257 SLNLSFTGL 265

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 64/331 (19%), Positives = 108/331 (32%), Gaps = 42/331 (12%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
            +        I +   +G     ++  LKL  N F +     +     L +L L   N  
Sbjct: 60  KVEQQTPGLVIRNNTFRG---LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD 116

Query: 241 GS-LPMSI-GALNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIP--TWI 295
           G+ L  +    L SL  L LR+N +  I P + F N+     LD+  N++  +I     +
Sbjct: 117 GAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLL 175

Query: 296 GETFSRLMILNLRSNKFHGDFPIQLC--------RLGSLQILDVAYNSLSGTIPRCI-NN 346
                   +L L S          L         +  S+  LD++ N    ++ +   + 
Sbjct: 176 NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNL------------- 393
            +          NS    +S G     +      KG         +L             
Sbjct: 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295

Query: 394 -----VRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLD 446
                +  + +++N  + +I       L  L  LNLS N     I   +   +  +E LD
Sbjct: 296 SHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLD 353

Query: 447 FSANQLSGQIPQSM-SNLSFLNYLNLSNNNL 476
            S N +   +       L  L  L L  N L
Sbjct: 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQL 383

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.9 bits (200), Expect = 2e-16
 Identities = 65/325 (20%), Positives = 113/325 (34%), Gaps = 33/325 (10%)

Query: 23  LRALDLSNNTVNGPI--PLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
           L  L L+   ++G +        + +LE L L +N +        FLN+ +  V     N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 81  SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
            +        +       L  +  H      L L S   +   D++   +  +     + 
Sbjct: 165 KV------KSICE--EDLLNFQGKHFTL---LRLSS---ITLQDMNEYWLGWEKCGNPFK 210

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFH----LIC 196
           +      L++SGN     + K    ++      SL+ S      ++   + F        
Sbjct: 211 NTSI-TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 197 QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMS 255
           +G   S  ++   LSK+     +   + ++  L  L L  N     +  +    L  L+ 
Sbjct: 270 KGLEAS-GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLK 327

Query: 256 LNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF--- 312
           LNL  N L  I    F NL  L+ LD+  N +   +          L  L L +N+    
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSV 386

Query: 313 -HGDFPIQLCRLGSLQILDVAYNSL 336
             G F     RL SLQ + +  N  
Sbjct: 387 PDGIF----DRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 78.2 bits (193), Expect = 1e-15
 Identities = 61/373 (16%), Positives = 125/373 (33%), Gaps = 67/373 (17%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
            +  +DLS N++      S  ++ +L++L +        +    F  L+ L++ +   N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 82  LVFKINPNWVPP------FQLAFLELRSCHLGPRF--PLWLQSQKKLYYLDISSTRISAK 133
            +       +          L  L L  C+L        + +    L  L +    I   
Sbjct: 91  FLQ------LETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI 144

Query: 134 IPRGFWNSIFQYDYLNVSGNQIYGGVPK--FDSPSVPLITTPSLLG-------------- 177
            P  F+ ++ ++  L+++ N++   + +    +      T   L                
Sbjct: 145 QPASFFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 178 -----------SIFDLSNNALSGSIFHLICQGENFSK---------NIEFLKLSKNHFSE 217
                      +  DLS N    S+          +K                   +F  
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK- 262

Query: 218 DIPDCW---MNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRN 273
           D  +     +    ++  +L  +    +L  S+      L  L L  N ++ I   +F  
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG 321

Query: 274 LSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQIL 329
           L+ L  L++ +N L G+I + + E   +L +L+L  N         F      L +L+ L
Sbjct: 322 LTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFL----GLPNLKEL 376

Query: 330 DVAYNSLSGTIPR 342
            +  N L  ++P 
Sbjct: 377 ALDTNQLK-SVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 69.4 bits (170), Expect = 1e-12
 Identities = 55/342 (16%), Positives = 109/342 (31%), Gaps = 52/342 (15%)

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA-LNSLMSLNLRNNR 262
           ++ ++ LS N  +E     +     L+ L +        +  +    L+SL+ L L  N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 263 LSGIIPTSFRNLSILKALDMGENEL-VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL- 320
              +   +F  L+ L+ L + +  L    +     +  + L +L LR N      P    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 321 CRLGSLQILDVAYNSLSGTIPR----------------CINNFSAMATTDSSDPNSGIFY 364
             +    +LD+ +N +  +I                         M          G  +
Sbjct: 151 LNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPF 209

Query: 365 ASSG-------DNEIVEDAL-----LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV 412
            ++         N   E         +    +       +          NF        
Sbjct: 210 KNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTF 269

Query: 413 TNLQ--GLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469
             L+  G+++ +LS +     +  ++      +E L  + N+++     +   L+ L  L
Sbjct: 270 KGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKL 328

Query: 470 NLSNNNLNGEIPSST---------------QLQSFGASSFAG 496
           NLS N L G I S                  +++ G  SF G
Sbjct: 329 NLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 57/299 (19%), Positives = 106/299 (35%), Gaps = 57/299 (19%)

Query: 188 SGSIFHLICQG-------ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           S     ++C         +    N  +L L +N+      D + +   L +L LG N+  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR 112

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
                +   L SL +L L +N L+ I   +F  LS L+ L +  N +  +IP++      
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVP 171

Query: 301 RLMILNL-RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
            LM L+L    K           L +L+ L++   ++       + N + +         
Sbjct: 172 SLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-----MPNLTPLV-------- 218

Query: 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGL 418
                                            L   +++S N+F  EI       L  L
Sbjct: 219 --------------------------------GL-EELEMSGNHFP-EIRPGSFHGLSSL 244

Query: 419 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           + L + ++  +    +    + S+  L+ + N LS       + L +L  L+L +N  N
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 55/267 (20%), Positives = 84/267 (31%), Gaps = 41/267 (15%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
               R L+L  N +      +   + +LE L L  N +   +    F  L  L       
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 80  NSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGF 138
           N L   I         +L  L LR+  +             L  LD+   +    I  G 
Sbjct: 133 NWLTV-IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG 198
           +  +F   YLN+    I   +P                                      
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMPNLTPLV-------------------------------- 218

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                 +E L++S NHF E  P  +     L+ L + N+  +     +   L SL+ LNL
Sbjct: 219 -----GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGEN 285
            +N LS +    F  L  L  L +  N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%)

Query: 45  ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPN-WVPPFQLAFLELRS 103
           +N  YL+L  N +   +    F +L  L V +   NS+  +I    +     L  LEL  
Sbjct: 75  SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFD 163
             L        +   KL  L + +  I   IP   +N +     L++             
Sbjct: 133 NWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGEL---------- 181

Query: 164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW 223
                          +  +S  A  G              N+++L L   +  + +P+  
Sbjct: 182 -------------KKLEYISEGAFEG------------LFNLKYLNLGMCNIKD-MPN-L 214

Query: 224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
                L  L +  N+F    P S   L+SL  L + N+++S I   +F  L+ L  L++ 
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLA 274

Query: 284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSL 326
            N L  ++P  +      L+ L+L  N ++ D     C +  L
Sbjct: 275 HNNLS-SLPHDLFTPLRYLVELHLHHNPWNCD-----CDILWL 311

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 67.8 bits (166), Expect = 3e-12
 Identities = 52/255 (20%), Positives = 85/255 (33%), Gaps = 28/255 (10%)

Query: 88  PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDY 147
           P  +P     +L L   ++        +    L  L +    I  +I  G +N +   + 
Sbjct: 70  PQGIPS-NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNT 127

Query: 148 LNVSGNQIYGGVPKFDSPSVP---LITTPSLLGSIFDLSNNALSGSIFHLICQGENFS-- 202
           L +  N +           +P         L      L NN +  SI         F+  
Sbjct: 128 LELFDNWL---------TVIPSGAFEYLSKL--RELWLRNNPIE-SI-----PSYAFNRV 170

Query: 203 KNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
            ++  L L +           +     L+ LNLG  N    +P ++  L  L  L +  N
Sbjct: 171 PSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGN 228

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
               I P SF  LS LK L +  +++   I     +  + L+ LNL  N           
Sbjct: 229 HFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 322 RLGSLQILDVAYNSL 336
            L  L  L + +N  
Sbjct: 288 PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 21/90 (23%), Positives = 34/90 (37%), Gaps = 4/90 (4%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
             +  ++   S E+P  +      + LNL  N       D    +  +E L    N +  
Sbjct: 57  SKVVCTRRGLS-EVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPSST 484
               + + L+ LN L L +N L   IPS  
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLT-VIPSGA 142

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 15/109 (13%)

Query: 391 LNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS 448
           L+ +  + + +N+   +I V     L  L +L L  N  T  IP      +  +  L   
Sbjct: 98  LHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLR 155

Query: 449 ANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAG 496
            N +   IP    + +  L  L+L             +L+     +F G
Sbjct: 156 NNPIE-SIPSYAFNRVPSLMRLDLGELK---------KLEYISEGAFEG 194

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 80.3 bits (198), Expect = 5e-16
 Identities = 74/462 (16%), Positives = 142/462 (30%), Gaps = 62/462 (13%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
           LR L LS+N +            +LEYLD+S+N+L      I    +  L       N  
Sbjct: 78  LRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL----QNISCCPMASLRHLDLSFNDF 133

Query: 83  VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSI 142
                   V P    F  L                 KL +L +S+ +          +  
Sbjct: 134 D-------VLPVCKEFGNL----------------TKLTFLGLSAAKFRQLDLLPVAHLH 170

Query: 143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202
                L++    I GG  +    S+ +  T  L   +    N+  S  +   +    +  
Sbjct: 171 LSCILLDLVSYHIKGGETE----SLQIPNTTVL--HLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL---NSLMSLNLR 259
            +   L                  P L  + L +   T    + +        +  LN+ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGN----IPTWIGETFSRLMILNLRSNKFHGD 315
           N  ++  I       S      +    +           +   F+ + I  L  +     
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 316 FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVED 375
             +      S   L+   N  + ++       S +    +              N +   
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVF---QGCSTLKRLQTLILQR---------NGLK-- 390

Query: 376 ALLVTKGFLVEYNSILNLVRSIDISKNNF-SGEIPVEVTNLQGLQSLNLSHNLFTGRIPD 434
                          ++ + ++D+S N+  S          + +  LNLS N+ TG +  
Sbjct: 391 NFFKVALMTKN----MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 435 NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            +     ++ LD   N++   IP+ +++L  L  LN+++N L
Sbjct: 447 CLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 78.4 bits (193), Expect = 2e-15
 Identities = 75/452 (16%), Positives = 149/452 (32%), Gaps = 68/452 (15%)

Query: 14  TNQL-----GRFKTLRALDLSNNTVNG-PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL 67
            N+L         +LR LDLS N  +  P+    G +  L +L LS  K      ++  L
Sbjct: 109 HNRLQNISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF----RQLDLL 164

Query: 68  NLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQ---SQKKLYYLD 124
            +  L +     + + + I        Q+    +      P     +Q   S   L +L 
Sbjct: 165 PVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ 224

Query: 125 ISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG-SIFDLS 183
           +S+ +++ +  +     + +        N     +      SV L            ++ 
Sbjct: 225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284

Query: 184 NNALSGSIFHLICQGENFS-KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS 242
           N  ++  I          + K++    +    F       +  +  + +  L  ++    
Sbjct: 285 NLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344

Query: 243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE--TFS 300
             +   + +S   LN   N  +  +      L  L+ L +  N L  N           S
Sbjct: 345 HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMS 403

Query: 301 RLMILNLRSNKFHGDFPIQLCRL-GSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
            L  L++  N  +     + C    S+ +L+++ N L+G++ RC+               
Sbjct: 404 SLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP-------------- 449

Query: 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ 419
                                             V+ +D+  N     IP +VT+LQ LQ
Sbjct: 450 --------------------------------PKVKVLDLHNNRIM-SIPKDVTHLQALQ 476

Query: 420 SLNLSHNLFTGRIPDNI-GVMRSIESLDFSAN 450
            LN++ N     +PD +   + S++ +    N
Sbjct: 477 ELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.4 bits (180), Expect = 8e-14
 Identities = 53/291 (18%), Positives = 110/291 (37%), Gaps = 20/291 (6%)

Query: 2   LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIAN---LEYLDLSNNKLN 58
           L     Q      ++L R  TL  + L +        + L Q      +EYL++ N  + 
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289

Query: 59  GTVSE----IHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWL 114
             +           L  L++        +F     +    ++    L          +  
Sbjct: 290 ERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCP 349

Query: 115 QSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS 174
            S     +L+ +    +  + +G  +++ +   L +  N +       +   V L+T   
Sbjct: 350 PSPSSFTFLNFTQNVFTDSVFQGC-STLKRLQTLILQRNGLK------NFFKVALMTKNM 402

Query: 175 LLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL 234
                 D+S N+L+   +   C     +++I  L LS N  +  +  C    P++++L+L
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAW---AESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457

Query: 235 GNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
            NN    S+P  +  L +L  LN+ +N+L  +    F  L+ L+ + + +N
Sbjct: 458 HNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.6 bits (178), Expect = 1e-13
 Identities = 77/456 (16%), Positives = 139/456 (30%), Gaps = 52/456 (11%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN-- 80
           L  LD+S+N +     +S   +A+L +LDLS N  +       F NLT+L          
Sbjct: 102 LEYLDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158

Query: 81  -SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
             L      +      L  L       G    L + +   L+ +   ++  S ++     
Sbjct: 159 RQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVN 218

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
                        ++    +  F S      T  ++     + +       +F       
Sbjct: 219 ALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV-KLFQFFWPRP 277

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
               NI  L +++    E+          L + ++ N  F  S          +    L 
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ 319
            +    I      + S    L+  +N    +       T  RL  L L+ N    +F   
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFT-DSVFQGCSTLKRLQTLILQRNGLK-NFFKV 395

Query: 320 LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLV 379
                ++  L+    SL        N+ ++ A   +      I   +   N +       
Sbjct: 396 ALMTKNMSSLETLDVSL--------NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF-- 445

Query: 380 TKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM 439
                     +   V+ +D+  N     IP +VT+LQ LQ LN++ N     +PD     
Sbjct: 446 --------RCLPPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDG---- 491

Query: 440 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNN 475
                                  L+ L Y+ L +N 
Sbjct: 492 -------------------VFDRLTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 55.6 bits (134), Expect = 3e-08
 Identities = 64/380 (16%), Positives = 119/380 (31%), Gaps = 44/380 (11%)

Query: 122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY---GGVPKFDSPSVPLITTPSLLGS 178
            L +S   IS ++     + + +   L +S N+I      V  F            L   
Sbjct: 56  ALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHV--FLF-------NQDL--E 103

Query: 179 IFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM--NWPRLRMLNLGN 236
             D+S+N L       +        ++  L LS N F   +P C    N  +L  L L  
Sbjct: 104 YLDVSHNRLQNISCCPM-------ASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSA 155

Query: 237 NNFTGSLPMSIGALN-SLMSLNLRNNRLSGIIPTSFRNLSILK-ALDMGENELVGNIPTW 294
             F     + +  L+ S + L+L +  + G    S +  +     L    N L       
Sbjct: 156 AKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNM 215

Query: 295 IGETFSRLMILNLRSNKFH-GDFPIQLCRLG-SLQILDVAYNSLSGTIPRCINNFSAMAT 352
                  L + N++ N  +       L  L     +L+V    +  T    +  F     
Sbjct: 216 SVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWP 275

Query: 353 TDSSDPN-SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF------- 404
                 N   +      D E    +    K  ++E+      + S +   + F       
Sbjct: 276 RPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKM 335

Query: 405 -----SGEIPVEVTN-LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQ 458
                +  I +           LN + N+FT  +      ++ +++L    N L     +
Sbjct: 336 LSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFK 394

Query: 459 SMSNLSFLNYLNLSNNNLNG 478
                  ++ L   + +LN 
Sbjct: 395 VALMTKNMSSLETLDVSLNS 414

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 47/268 (17%), Positives = 88/268 (32%), Gaps = 33/268 (12%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
           PR + L+L  N+ +      I  L+ L  L L +NR+  +    F     L+ LD+  N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKF-----HGDFPIQLCRLGSLQILDVAYNSLSGTIP 341
           L  NI        + L  L+L  N F       +F      L  L  L ++         
Sbjct: 112 LQ-NISC---CPMASLRHLDLSFNDFDVLPVCKEFG----NLTKLTFLGLSAAKFRQLDL 163

Query: 342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK 401
             + +            +   ++   G+ E ++              ++L+LV   +   
Sbjct: 164 LPVAHL----HLSCILLDLVSYHIKGGETESLQIPNT----------TVLHLVFHPNSLF 209

Query: 402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461
           +         + +LQ L ++ L+       +     + R    L+ +   +      S+ 
Sbjct: 210 SVQVNMSVNALGHLQ-LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVK 268

Query: 462 NLSFLN-----YLNLSNNNLNGEIPSST 484
              F       YLN+ N  +   I    
Sbjct: 269 LFQFFWPRPVEYLNIYNLTITERIDREE 296

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 7e-16
 Identities = 60/251 (23%), Positives = 91/251 (36%), Gaps = 48/251 (19%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
              R+LNL  N        S   L  L  L L  N +  I   +F  L+ L  L++ +N 
Sbjct: 64  TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA-YNSLSGTIPRCIN 345
           L   IP       S+L  L LR+N           R+ SL+ LD+     LS  I     
Sbjct: 124 LT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS-YIS---- 177

Query: 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
                          G F                           L+ +R ++++  N  
Sbjct: 178 --------------EGAFEG-------------------------LSNLRYLNLAMCNLR 198

Query: 406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSF 465
            EIP  +T L  L  L+LS N  +   P +   +  ++ L    +Q+      +  NL  
Sbjct: 199 -EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS 256

Query: 466 LNYLNLSNNNL 476
           L  +NL++NNL
Sbjct: 257 LVEINLAHNNL 267

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.0 bits (195), Expect = 7e-16
 Identities = 62/328 (18%), Positives = 111/328 (33%), Gaps = 60/328 (18%)

Query: 188 SGSIFHLICQG-------ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           S     +IC         +  S N   L L +N       + + +   L +L L  N+  
Sbjct: 42  SNQFSKVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR 101

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
                +   L +L +L L +NRL+ I   +F  LS LK L +  N +  +IP++      
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIP 160

Query: 301 RLMILNL-RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
            L  L+L    +           L +L+ L++A  +L       I N +           
Sbjct: 161 SLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-----IPNLTP---------- 205

Query: 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGL 418
                                          L  +  +D+S N+ S  I       L  L
Sbjct: 206 -------------------------------LIKLDELDLSGNHLS-AIRPGSFQGLMHL 233

Query: 419 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN- 477
           Q L +  +       +    ++S+  ++ + N L+       + L  L  ++L +N  N 
Sbjct: 234 QKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC 293

Query: 478 --GEIPSSTQLQSFGASSFAGNDLCGAP 503
               +  S  ++    S+ A    C  P
Sbjct: 294 NCDILWLSWWIKDMAPSNTACCARCNTP 321

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 59/304 (19%), Positives = 100/304 (32%), Gaps = 69/304 (22%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
               R L+L  N +      S   + +LE L LS N +  T+    F  L  L       
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N L   I          AF+ L                  L  L + +  I + IP   +
Sbjct: 122 NRLT-TIPNG-------AFVYLSK----------------LKELWLRNNPIES-IPSYAF 156

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
           N I     L++                   ++          +S  A  G          
Sbjct: 157 NRIPSLRRLDLGEL--------------KRLSY---------ISEGAFEG---------- 183

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
               N+ +L L+  +  E IP+      +L  L+L  N+ +   P S   L  L  L + 
Sbjct: 184 --LSNLRYLNLAMCNLRE-IPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMI 239

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ 319
            +++  I   +F NL  L  +++  N L   +P  +      L  ++L  N ++ +    
Sbjct: 240 QSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNCN---- 294

Query: 320 LCRL 323
            C +
Sbjct: 295 -CDI 297

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 53/255 (20%), Positives = 91/255 (35%), Gaps = 28/255 (10%)

Query: 88  PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDY 147
           P+ +       L L    +        +  + L  L +S   I   I  G +N +   + 
Sbjct: 59  PDGIST-NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNT 116

Query: 148 LNVSGNQIYGGVPKFDSPSVP---LITTPSLLGSIFDLSNNALSGSIFHLICQGENFS-- 202
           L +  N++          ++P    +    L      L NN +  SI         F+  
Sbjct: 117 LELFDNRL---------TTIPNGAFVYLSKL--KELWLRNNPIE-SI-----PSYAFNRI 159

Query: 203 KNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
            ++  L L +    S      +     LR LNL   N    +P ++  L  L  L+L  N
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGN 217

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
            LS I P SF+ L  L+ L M ++++   I     +    L+ +NL  N           
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 322 RLGSLQILDVAYNSL 336
            L  L+ + + +N  
Sbjct: 277 PLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.9 bits (109), Expect = 2e-05
 Identities = 47/224 (20%), Positives = 72/224 (32%), Gaps = 54/224 (24%)

Query: 268 PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ 327
           P+     +    +      L   +P  I    +   +LNL  N+           L  L+
Sbjct: 36  PSVCSCSNQFSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLE 91

Query: 328 ILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY 387
           IL ++ N +  TI                    G F                        
Sbjct: 92  ILQLSRNHIR-TIE------------------IGAFNG---------------------- 110

Query: 388 NSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESL 445
              L  + ++++  N  +  IP      L  L+ L L +N     IP      + S+  L
Sbjct: 111 ---LANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL 165

Query: 446 DFS-ANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
           D     +LS     +   LS L YLNL+  NL  EIP+ T L  
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIK 208

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 76.7 bits (189), Expect = 2e-15
 Identities = 48/286 (16%), Positives = 103/286 (36%), Gaps = 26/286 (9%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLN 257
              ++ ++ L LS N  +            L+ L L +N    ++      +L SL  L+
Sbjct: 48  SGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLD 106

Query: 258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----- 312
           L  N LS +  + F+ LS L  L++  N       T +    ++L IL + +        
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEI 372
             DF      L  L+ L++  + L    P+ + +   ++          +      D   
Sbjct: 167 RKDFA----GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-- 220

Query: 373 VEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432
                  +   L   ++ L+     ++S    +      +      +++ ++      ++
Sbjct: 221 -----TSSVECLELRDTDLDTFHFSELSTGETNS-----LIKKFTFRNVKITDESLF-QV 269

Query: 433 PDNIGVMRSIESLDFSANQLSGQIPQSM-SNLSFLNYLNLSNNNLN 477
              +  +  +  L+FS NQL   +P  +   L+ L  + L  N  +
Sbjct: 270 MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.4 bits (157), Expect = 3e-11
 Identities = 45/272 (16%), Positives = 93/272 (34%), Gaps = 17/272 (6%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
            + +++LDLSNN +       L +  NL+ L L++N +N T+ E  F +L  L       
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 80  NSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPL-WLQSQKKLYYLDISSTRISAKIPRG 137
           N L   ++ +W  P   L FL L                  KL  L + +     KI R 
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 138 FWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALS----GSIFH 193
            +  +   + L +  + +          S+  ++          L            +  
Sbjct: 169 DFAGLTFLEELEIDASDL-QSYEPKSLKSIQNVSH-------LILHMKQHILLLEIFVDV 220

Query: 194 LICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL 253
                    ++ +      +  S    +  +     R + + + +    +   +  ++ L
Sbjct: 221 TSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGL 279

Query: 254 MSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
           + L    N+L  +    F  L+ L+ + +  N
Sbjct: 280 LELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 60.9 bits (148), Expect = 3e-10
 Identities = 49/304 (16%), Positives = 100/304 (32%), Gaps = 67/304 (22%)

Query: 45  ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSC 104
             ++ LDLSNN++   +S         L       N +   I  +       +F  L S 
Sbjct: 52  EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINT-IEED-------SFSSLGS- 101

Query: 105 HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS 164
                          L +LD+S   +S  +   ++  +    +LN+ GN           
Sbjct: 102 ---------------LEHLDLSYNYLSN-LSSSWFKPLSSLTFLNLLGNPY--------- 136

Query: 165 PSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM 224
            ++   +  S L  +  L                        F K+ +  F+        
Sbjct: 137 KTLGETSLFSHLTKLQIL-----------------RVGNMDTFTKIQRKDFA-------- 171

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
               L  L +  ++     P S+ ++ ++  L L   +   ++       S ++ L++ +
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 285 NELVGNIPTWI--GETFSRLMILNLRSNKFHG----DFPIQLCRLGSLQILDVAYNSLSG 338
            +L     + +  GET S +     R+ K            L ++  L  L+ + N L  
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK- 290

Query: 339 TIPR 342
           ++P 
Sbjct: 291 SVPD 294

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 59.0 bits (143), Expect = 1e-09
 Identities = 47/273 (17%), Positives = 84/273 (30%), Gaps = 57/273 (20%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
             ++ L+L NN  T      +    +L +L L +N ++ I   SF +L  L+ LD+  N 
Sbjct: 52  EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL-CRLGSLQILDVAYNSLSGTIPRCIN 345
           L  N+ +   +  S L  LNL  N +       L   L  LQIL V        I     
Sbjct: 112 LS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ---- 166

Query: 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
                            F                          +  L   ++I  ++  
Sbjct: 167 --------------RKDF------------------------AGLTFL-EELEIDASDLQ 187

Query: 406 GEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNL 463
                +   ++Q +  L L        + +    V  S+E L+     L       +S  
Sbjct: 188 -SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTG 245

Query: 464 SF--------LNYLNLSNNNLNGEIPSSTQLQS 488
                        + +++ +L   +    Q+  
Sbjct: 246 ETNSLIKKFTFRNVKITDESLFQVMKLLNQISG 278

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 38/262 (14%), Positives = 80/262 (30%), Gaps = 66/262 (25%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
            R  +    + +   S+P  +    ++ SL+L NNR++ I  +  +    L+AL +  N 
Sbjct: 31  DRNGICKGSSGSLN-SIPSGLTE--AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87

Query: 287 LVGNIPTWIGETFSRLMILNLRSNK--------FHGDFPIQLCRLGSLQILDVAYNSLSG 338
           +   I      +   L  L+L  N         F          L SL  L++  N    
Sbjct: 88  IN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKP--------LSSLTFLNLLGNPY-- 136

Query: 339 TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSID 398
                            +   + +F                         S L  ++ + 
Sbjct: 137 ----------------KTLGETSLF-------------------------SHLTKLQILR 155

Query: 399 ISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQI 456
           +   +   +I  +    L  L+ L +  +             ++++  L     Q    +
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHILLL 214

Query: 457 PQSMSNLSFLNYLNLSNNNLNG 478
              +   S +  L L + +L+ 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDT 236

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 77.0 bits (190), Expect = 4e-15
 Identities = 70/493 (14%), Positives = 149/493 (30%), Gaps = 125/493 (25%)

Query: 23  LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL 82
             +   +   +     +S  Q+A L  LD  N+ +   ++ I    LT L       N  
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSIT-DMTGIE--KLTGLTKLICTSN-- 74

Query: 83  VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSI 142
                        +  L+L                  L YL   S +++  +       +
Sbjct: 75  ------------NITTLDLSQN-------------TNLTYLACDSNKLT-NLDVTPLTKL 108

Query: 143 FQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS 202
               YLN   N++                      +  D+S N                 
Sbjct: 109 ---TYLNCDTNKL----------------------TKLDVSQN----------------- 126

Query: 203 KNIEFLKLSKNHFSE-DIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
             + +L  ++N  +E D+        +L  L+   N     L   +     L +L+   N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHN----TQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN 180

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
           +++ +         +L  L+   N +   +         +L  L+  SNK      I + 
Sbjct: 181 KITEL---DVSQNKLLNRLNCDTNNIT-KLDL---NQNIQLTFLDCSSNKLTE---IDVT 230

Query: 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
            L  L   D + N L+  +   ++  S + T                  +++E       
Sbjct: 231 PLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQ------------TDLLE------- 268

Query: 382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS 441
                   + +  + I            ++VT+   L  L+      T     ++     
Sbjct: 269 ------IDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPK 319

Query: 442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCG 501
           +  L  +  +L+ ++   +S+ + L  L+  N ++  +  S  ++ +   +  A      
Sbjct: 320 LVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQ-DFSSVGKIPALNNNFEAEGQTIT 375

Query: 502 APLSNCTEKNILI 514
            P    T  ++ I
Sbjct: 376 MPKETLTNNSLTI 388

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 71.3 bits (175), Expect = 3e-13
 Identities = 63/473 (13%), Positives = 131/473 (27%), Gaps = 124/473 (26%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
             +  TL +LD  N+++     +   ++  L  L  ++N +    + +     T L    
Sbjct: 38  EEQLATLTSLDCHNSSITDMTGIE--KLTGLTKLICTSNNI----TTLDLSQNTNLTYLA 91

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR 136
              N              +L  L++                 KL YL+  + +++ K+  
Sbjct: 92  CDSN--------------KLTNLDVTPL-------------TKLTYLNCDTNKLT-KLDV 123

Query: 137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLIC 196
                +    YLN + N +                      +  D+S+N           
Sbjct: 124 SQNPLL---TYLNCARNTL----------------------TEIDVSHN----------- 147

Query: 197 QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL 256
                   +  L    N     +        +L  L+   N  T    + +     L  L
Sbjct: 148 ------TQLTELDCHLNKKITKLDVTPQ--TQLTTLDCSFNKITE---LDVSQNKLLNRL 196

Query: 257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF 316
           N   N ++ +          L  LD   N+L   I        ++L   +   N      
Sbjct: 197 NCDTNNITKL---DLNQNIQLTFLDCSSNKLT-EIDV---TPLTQLTYFDCSVNPLT--- 246

Query: 317 PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA 376
            + +  L  L  L      L                 D +     I++ + G  +I E  
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLL--------------EIDLTHNTQLIYFQAEGCRKIKELD 292

Query: 377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI 436
           +           +    +  +D      +    ++++    L  L L++   T  +   +
Sbjct: 293 V-----------THNTQLYLLDCQAAGIT---ELDLSQNPKLVYLYLNNTELT-ELD--V 335

Query: 437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF 489
                ++SL      +      S+  +  LN    +          +    S 
Sbjct: 336 SHNTKLKSLSCVNAHIQ-DFS-SVGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 45/293 (15%), Positives = 88/293 (30%), Gaps = 45/293 (15%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           +     L  LD   N     + ++      L  LD S NK+    +E+       L    
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVT--PQTQLTTLDCSFNKI----TELDVSQNKLLNRLN 197

Query: 77  AHGN---SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAK 133
              N    L    N        L FL+  S  L     +      +L Y D S   ++  
Sbjct: 198 CDTNNITKLDLNQNIQ------LTFLDCSSNKL-TEIDV--TPLTQLTYFDCSVNPLTEL 248

Query: 134 IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG----SIFDLSNNALSG 189
                         L+     +     + D      +      G       D+++N    
Sbjct: 249 DVSTLSK----LTTLHCIQTDLL----EIDLTHNTQLIYFQAEGCRKIKELDVTHNT--- 297

Query: 190 SIFHLICQGENFS-------KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS 242
            ++ L CQ    +         + +L L+    + ++     +  +L+ L+  N +    
Sbjct: 298 QLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-ELDVS--HNTKLKSLSCVNAHIQ-D 353

Query: 243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWI 295
              S+G + +L +      +   +   +  N S+  A+     +  GN     
Sbjct: 354 FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIE 405

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 72.7 bits (179), Expect = 2e-14
 Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 54/256 (21%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
              + + L  N  +     S  A  +L  L L +N L+ I   +F  L++L+ LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 287 LVGNIPTWIGETFS---RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC 343
            + ++      TF    RL  L+L         P     L +LQ L +  N+L   +P  
Sbjct: 92  QLRSVDP---ATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALP-- 145

Query: 344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN 403
                              F                          + NL   + +  N 
Sbjct: 146 ----------------DDTF------------------------RDLGNL-THLFLHGNR 164

Query: 404 FSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMS 461
            S  +P      L  L  L L  N     +  +    +  + +L   AN LS    ++++
Sbjct: 165 IS-SVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 462 NLSFLNYLNLSNNNLN 477
            L  L YL L++N   
Sbjct: 223 PLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 40/168 (23%), Positives = 62/168 (36%), Gaps = 17/168 (10%)

Query: 181 DLSNNALS----GSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLG 235
            L +N L+     +   L          +E L LS N     +    +    RL  L+L 
Sbjct: 62  WLHSNVLARIDAAAFTGL--------ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD 113

Query: 236 NNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTW 294
                  L   +   L +L  L L++N L  +   +FR+L  L  L +  N +  ++P  
Sbjct: 114 RCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS-SVPER 171

Query: 295 IGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
                  L  L L  N+     P     LG L  L +  N+LS  +P 
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 45/266 (16%), Positives = 75/266 (28%), Gaps = 61/266 (22%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
               + + L  N ++     S     NL  L L +N L   +    F  L  L       
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSD 89

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N+ +  ++P         F  L                 +L+ L +    +   +  G +
Sbjct: 90  NAQLRSVDPA-------TFHGLG----------------RLHTLHLDRCGLQE-LGPGLF 125

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
             +    YL +  N +                          L ++              
Sbjct: 126 RGLAALQYLYLQDNALQ------------------------ALPDDTFRDL--------- 152

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
               N+  L L  N  S      +     L  L L  N      P +   L  LM+L L 
Sbjct: 153 ---GNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 260 NNRLSGIIPTSFRNLSILKALDMGEN 285
            N LS +   +   L  L+ L + +N
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 53.8 bits (130), Expect = 4e-08
 Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 76/257 (29%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
              +        ++P+ I    +   + L  NR+S +   SFR    L  L +  N    
Sbjct: 14  VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV--- 67

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSA 349
                         +  + +  F G        L  L+ LD++ N+   ++         
Sbjct: 68  --------------LARIDAAAFTG--------LALLEQLDLSDNAQLRSVD-------- 97

Query: 350 MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
                        F+                          L  + ++ + +     E+ 
Sbjct: 98  ----------PATFHG-------------------------LGRLHTLHLDRCGLQ-ELG 121

Query: 410 VEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLN 467
             +   L  LQ L L  N     +PD+    + ++  L    N++S    ++   L  L+
Sbjct: 122 PGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLD 180

Query: 468 YLNLSNNNLNGEIPSST 484
            L L  N +   +    
Sbjct: 181 RLLLHQNRVA-HVHPHA 196

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 50.4 bits (121), Expect = 6e-07
 Identities = 50/262 (19%), Positives = 84/262 (32%), Gaps = 63/262 (24%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            +FL  ++            + L  L L +N +      +   +A LE LDLS+N    +
Sbjct: 36  RIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRS 95

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
           V    F  L +L         L  ++ P         F  L +                L
Sbjct: 96  VDPATFHGLGRLHTLHLDRCGLQ-ELGPG-------LFRGLAA----------------L 131

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180
            YL +    + A +P   +  +    +L + GN+I                         
Sbjct: 132 QYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRIS------------------------ 166

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
            +   A  G              +++ L L +N  +   P  + +  RL  L L  NN +
Sbjct: 167 SVPERAFRG------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

Query: 241 GSLPMSI-GALNSLMSLNLRNN 261
            +LP      L +L  L L +N
Sbjct: 215 -ALPTEALAPLRALQYLRLNDN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 61.6 bits (150), Expect = 7e-11
 Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 36/239 (15%)

Query: 45  ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSC 104
            + + L L    L  T+    F NL  +       +  + ++  +       +F  L   
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESH-------SFYNLSK- 81

Query: 105 HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS 164
                          + +++I +TR    I       +    +L +    +         
Sbjct: 82  ---------------VTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK------MF 120

Query: 165 PSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM 224
           P +  + +  +   I ++++N    SI     QG         LKL  N F+  +     
Sbjct: 121 PDLTKVYSTDIF-FILEITDNPYMTSIPVNAFQG--LCNETLTLKLYNNGFTS-VQGYAF 176

Query: 225 NWPRLRMLNLGNNNFTGSLPMSI--GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD 281
           N  +L  + L  N +   +      G  +    L++    ++ +      +L  L A +
Sbjct: 177 NGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARN 235

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 33/233 (14%), Positives = 71/233 (30%), Gaps = 37/233 (15%)

Query: 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNK 311
           S  +L L    L  I   +F NL  +  + +  +  +  + +      S++  + +R+ +
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 312 ---------FHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI 362
                               L  L+ L +    L          F  +    S+D    +
Sbjct: 92  NLTYIDPDALKE--------LPLLKFLGIFNTGLK--------MFPDLTKVYSTDIFFIL 135

Query: 363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLN 422
               +     +                + N   ++ +  N F+  +     N   L ++ 
Sbjct: 136 EITDNPYMTSIPVNAF---------QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 423 LSHNLFTGRIPDNI--GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
           L+ N +   I  +   GV      LD S   ++    + + +L  L   N   
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNTWT 238

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 21/118 (17%), Positives = 42/118 (35%), Gaps = 10/118 (8%)

Query: 203 KNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRN 260
            NI  + +S +   + +    + N  ++  + + N      +       L  L  L + N
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 261 NRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETF----SRLMILNLRSNKFH 313
             L      T   +  I   L++ +N  + +IP      F    +  + L L +N F 
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV---NAFQGLCNETLTLKLYNNGFT 169

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 7e-05
 Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 31/155 (20%)

Query: 204 NIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNNNFTGSLP--MSIGALNSLMSLNL-R 259
            +  +++        I  D     P L+ L + N       P    + + +    L +  
Sbjct: 81  KVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITD 139

Query: 260 NNRLSGIIPTSFRNL-SILKALDMGENELVGNIPTWIGETF--SRLMILNLRSNK----- 311
           N  ++ I   +F+ L +    L +  N    ++  +    F  ++L  + L  NK     
Sbjct: 140 NPYMTSIPVNAFQGLCNETLTLKLYNNGF-TSVQGY---AFNGTKLDAVYLNKNKYLTVI 195

Query: 312 ----FHGDFPIQLCRLGS-LQILDVAYNSLSGTIP 341
               F G        + S   +LDV+  S++  +P
Sbjct: 196 DKDAFGG--------VYSGPSLLDVSQTSVT-ALP 221

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 15/103 (14%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 389 SILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLD 446
           S+    +++ + + +    IP    +NL  +  + +S ++   ++  +    +  +  ++
Sbjct: 28  SLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIE 86

Query: 447 FSANQLSGQIPQSM-SNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
               +    I       L  L +L + N  L    P  T++ S
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 13/98 (13%), Positives = 32/98 (32%), Gaps = 5/98 (5%)

Query: 391 LNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS 448
           L  +  I +S +    ++      NL  +  + + +      I  +    +  ++ L   
Sbjct: 54  LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIF 113

Query: 449 ANQLSGQIPQ--SMSNLSFLNYLNLSNNNLNGEIPSST 484
              L    P    + +      L +++N     IP + 
Sbjct: 114 NTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 62.0 bits (150), Expect = 3e-10
 Identities = 53/310 (17%), Positives = 102/310 (32%), Gaps = 83/310 (26%)

Query: 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG 241
             +  +   IF      + F        L K   ++ +         +  +   N++   
Sbjct: 6   TVSTPIK-QIFPD----DAF-AETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK- 56

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL--VGNIPTWIGETF 299
           S+   I  L ++  L L  N+L+ I P    NL  L  L + EN++  + ++     +  
Sbjct: 57  SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSL-----KDL 108

Query: 300 SRLMILNLRSNKFHGDFPIQ----LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDS 355
            +L  L+L  N       I     L  L  L+ L +  N ++      I   S       
Sbjct: 109 KKLKSLSLEHNG------ISDINGLVHLPQLESLYLGNNKIT-----DITVLSR------ 151

Query: 356 SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNL 415
                                              L  + ++ +  N  S +I   +  L
Sbjct: 152 -----------------------------------LTKLDTLSLEDNQIS-DIV-PLAGL 174

Query: 416 QGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
             LQ+L LS N     I D   +  +++++ L+  + +   +     SNL   N +  ++
Sbjct: 175 TKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTD 230

Query: 474 NNLNGEIPSS 483
            +L      S
Sbjct: 231 GSLVTPEIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 1e-08
 Identities = 58/366 (15%), Positives = 114/366 (31%), Gaps = 60/366 (16%)

Query: 169 LITTPSLLGSIFDLSN------NALSG-SIFHLICQGENFSKNIEFLKLSKNHFS--EDI 219
            IT  + +  IF          + L   S+   + Q E    +I+ +  + +     + I
Sbjct: 4   TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQGI 61

Query: 220 PDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279
                  P +  L L  N  T   P  +  L +L  L L  N++  +     ++L  LK+
Sbjct: 62  QYL----PNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 280 LDMGENEL--VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
           L +  N +  +  +         +L  L L +NK        L RL  L  L +  N +S
Sbjct: 114 LSLEHNGISDINGL-----VHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 166

Query: 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI 397
                 I   + +             Y S   N I +          +   + L  +  +
Sbjct: 167 D-----IVPLAGL-------TKLQNLYLS--KNHISD----------LRALAGLKNLDVL 202

Query: 398 DISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 457
           ++       +     +NL    ++  +        P+ I      E  +   +     +P
Sbjct: 203 ELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYEKPNVKWH-----LP 255

Query: 458 QSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLSNCTEKNILIPED 517
           +  + +SF+ Y  ++              Q          D+ G  +    E    I   
Sbjct: 256 EFTNEVSFIFYQPVTIGKAKARF-HGRVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAP 314

Query: 518 ENGSGN 523
           +  +  
Sbjct: 315 KPPTKQ 320

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 55.9 bits (134), Expect = 3e-08
 Identities = 43/304 (14%), Positives = 84/304 (27%), Gaps = 81/304 (26%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL-NLTQLLVF 75
              F      +L   +V   +  +  ++ +++ +  +N+ +      +  +  L  +   
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI----KSVQGIQYLPNVTKL 70

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
             +GN L   I P                         L + K L +L +   +I   + 
Sbjct: 71  FLNGNKLT-DIKP-------------------------LTNLKNLGWLFLDENKIK-DLS 103

Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLI 195
                                            L     L      L +N +S  I  L 
Sbjct: 104 --------------------------------SLKDLKKL--KSLSLEHNGIS-DINGL- 127

Query: 196 CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMS 255
               +    +E L L  N  ++          +L  L+L +N  +  +   +  L  L +
Sbjct: 128 ---VHL-PQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQN 179

Query: 256 LNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD 315
           L L  N +S +       L  L  L++   E + N P            +          
Sbjct: 180 LYLSKNHISDLRA--LAGLKNLDVLELFSQECL-NKPINHQSNLVVPNTVKNTDGSLVTP 236

Query: 316 FPIQ 319
             I 
Sbjct: 237 EIIS 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 44.3 bits (104), Expect = 1e-04
 Identities = 30/226 (13%), Positives = 72/226 (31%), Gaps = 63/226 (27%)

Query: 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF 312
           +      +  +  I P      +     ++ +  +   +        + +  +   ++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDI 55

Query: 313 HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEI 372
                IQ     ++  L +  N L+      I   + +                      
Sbjct: 56  KSVQGIQYLP--NVTKLFLNGNKLT-----DIKPLTNLK--------------------- 87

Query: 373 VEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI 432
                              NL   + + +N    ++   + +L+ L+SL+L HN     I
Sbjct: 88  -------------------NL-GWLFLDENKIK-DLS-SLKDLKKLKSLSLEHN----GI 121

Query: 433 PD--NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            D   +  +  +ESL    N+++      +S L+ L+ L+L +N +
Sbjct: 122 SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQI 165

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.7 bits (140), Expect = 8e-10
 Identities = 26/136 (19%), Positives = 52/136 (38%), Gaps = 6/136 (4%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
            NI+ L ++  H + +          L  L +   + T     ++  L SL  L++ ++ 
Sbjct: 66  HNIKDLTINNIHAT-NYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSA 123

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
               I T    L  + ++D+  N  + +I     +T   L  LN++ +  H    I+   
Sbjct: 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPL--KTLPELKSLNIQFDGVHDYRGIE--D 179

Query: 323 LGSLQILDVAYNSLSG 338
              L  L     ++ G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 18/88 (20%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
           + + I+  + +   P+    L  L+ L +     T     N+  + S+  LD S +    
Sbjct: 69  KDLTINNIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 455 QIPQSMSNLSFLNYLNLSNNNLNGEIPS 482
            I   ++ L  +N ++LS N    +I  
Sbjct: 127 SILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.6 bits (119), Expect = 4e-07
 Identities = 29/231 (12%), Positives = 72/231 (31%), Gaps = 55/231 (23%)

Query: 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
              + ++  L  +  + I      +L+ +   ++   +L G       E    +  L + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGI------EYAHNIKDLTIN 74

Query: 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSG 368
           +       PI    L +L+ L +    ++      ++  +                    
Sbjct: 75  NIHATNYNPIS--GLSNLERLRIMGKDVTSDKIPNLSGLT-------------------- 112

Query: 369 DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLF 428
                                  +L   +DIS +     I  ++  L  + S++LS+N  
Sbjct: 113 -----------------------SL-TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 429 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE 479
              I   +  +  ++SL+   + +       + +   LN L   +  + G+
Sbjct: 149 ITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.6 bits (114), Expect = 2e-06
 Identities = 15/93 (16%), Positives = 41/93 (44%), Gaps = 4/93 (4%)

Query: 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 450
           +N +  I ++  N +    +E      ++ L +++   T    + I  + ++E L     
Sbjct: 43  MNSLTYITLANINVTDLTGIE--YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGK 98

Query: 451 QLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS 483
            ++     ++S L+ L  L++S++  +  I + 
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 26/138 (18%), Positives = 54/138 (39%), Gaps = 8/138 (5%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
           K      L ++  + +I +  MN   L  + L N N T  L   I   +++  L + N  
Sbjct: 23  KAYLNGLLGQSSTA-NITEAQMN--SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIH 77

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
            +   P     LS L+ L +   ++  +    +    + L +L++  +        ++  
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSAHDDSILTKINT 134

Query: 323 LGSLQILDVAYNSLSGTI 340
           L  +  +D++YN     I
Sbjct: 135 LPKVNSIDLSYNGAITDI 152

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.0 bits (102), Expect = 7e-05
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 4/115 (3%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           +     L  L +    V      +L  + +L  LD+S++  + ++       L ++    
Sbjct: 84  ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT-KINTLPKVNSID 142

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRIS 131
              N  +  I P    P +L  L ++   +       ++   KL  L   S  I 
Sbjct: 143 LSYNGAITDIMPLKTLP-ELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQTIG 194

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 48/253 (18%), Positives = 78/253 (30%), Gaps = 55/253 (21%)

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
            + L+L  N        S  +   L  L+L    +  I   ++++LS L  L +  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI- 88

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHG--DFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
            ++        S L  L           +FPI    L +L+ L+VA+N +          
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIG--HLKTLKELNVAHNLI---------- 136

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG 406
                    S      F                        +++ NL   +D+S N    
Sbjct: 137 --------QSFKLPEYF------------------------SNLTNL-EHLDLSSNKIQ- 162

Query: 407 EIPVEV----TNLQGLQ-SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461
            I          +  L  SL+LS N     I         ++ L    NQL         
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221

Query: 462 NLSFLNYLNLSNN 474
            L+ L  + L  N
Sbjct: 222 RLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 38/175 (21%), Positives = 63/175 (36%), Gaps = 28/175 (16%)

Query: 181 DLSNNALS----GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
           DLS   +     G+   L         ++  L L+ N         +     L+ L    
Sbjct: 58  DLSRCEIQTIEDGAYQSL--------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109

Query: 237 NNFTGSLP-MSIGALNSLMSLNLRNNRLSGII-PTSFRNLSILKALDMGENELVGNIPTW 294
            N   SL    IG L +L  LN+ +N +     P  F NL+ L+ LD+  N++  +I   
Sbjct: 110 TNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYC- 166

Query: 295 IGETFSRL-------MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
                  L       + L+L  N  +        +   L+ L +  N L  ++P 
Sbjct: 167 --TDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-SVPD 217

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 51/268 (19%), Positives = 80/268 (29%), Gaps = 66/268 (24%)

Query: 22  TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
           + + LDLS N +      S      L+ LDLS  ++  T+ +  + +L+ L      GN 
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNP 87

Query: 82  LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS 141
           +        +     AF  L                  L  L    T ++  +       
Sbjct: 88  IQS------LALG--AFSGL----------------SSLQKLVAVETNLA-SLENFPIGH 122

Query: 142 IFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENF 201
           +     LNV+ N I      F  P              F            +L       
Sbjct: 123 LKTLKELNVAHNLI----QSFKLPEY------------FS-----------NLT------ 149

Query: 202 SKNIEFLKLSKNHFS---EDIPDCWMNWPRLRM-LNLGNNNFTGSLPMSIGALNSLMSLN 257
             N+E L LS N                P L + L+L  N     +         L  L 
Sbjct: 150 --NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELA 206

Query: 258 LRNNRLSGIIPTSFRNLSILKALDMGEN 285
           L  N+L  +    F  L+ L+ + +  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 63/285 (22%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLN 257
            +  +N   L+             +  +  L  + +  N+    +   +   L  L  + 
Sbjct: 26  SDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR 85

Query: 258 LRN-NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF---- 312
           +   N L  I P +F+NL  L+ L +    +  ++P        + ++L+++ N      
Sbjct: 86  IEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTI 144

Query: 313 -HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNE 371
               F   L       IL +  N +   I                   +  F        
Sbjct: 145 ERNSFV-GLSFE--SVILWLNKNGIQ-EIH------------------NSAF-------- 174

Query: 372 IVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTG 430
                            +   L        NN   E+P +V     G   L++S      
Sbjct: 175 -----------------NGTQLDELNLSDNNNLE-ELPNDVFHGASGPVILDISRTRIH- 215

Query: 431 RIPDNIGVMRSIESLDF-SANQLSGQIPQSMSNLSFLNYLNLSNN 474
            +P     + +++ L   S   L  ++P ++  L  L   +L+  
Sbjct: 216 SLPS--YGLENLKKLRARSTYNLK-KLP-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.8 bits (137), Expect = 8e-09
 Identities = 49/291 (16%), Positives = 82/291 (28%), Gaps = 63/291 (21%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
            +    L      +      +     +LE +++S N +   +    F NL +L   R   
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
            + +  INP        AF  L                  L YL IS+T I   +P    
Sbjct: 89  ANNLLYINPE-------AFQNLP----------------NLQYLLISNTGIK-HLPDVHK 124

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
               Q   L++  N                        +I  +  N+  G          
Sbjct: 125 IHSLQKVLLDIQDN-----------------------INIHTIERNSFVG---------- 151

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
             S     L L+KN   E     +       +    NNN            +  + L++ 
Sbjct: 152 -LSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS 210

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN 310
             R+  +      NL  L+A      + +  +     E    LM  +L   
Sbjct: 211 RTRIHSLPSYGLENLKKLRARSTYNLKKLPTL-----EKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 55.6 bits (134), Expect = 2e-08
 Identities = 46/264 (17%), Positives = 91/264 (34%), Gaps = 33/264 (12%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           R+     +  T  +P  +    + + L     +L  I   +F     L+ +++ +N+++ 
Sbjct: 12  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 290 NIPTWIGETFSRLMILN----LRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCIN 345
            I     + FS L  L+     ++N      P     L +LQ L ++   +   +P    
Sbjct: 69  VIEA---DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHK 124

Query: 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
             S          N  I       + I  ++             +      + ++KN   
Sbjct: 125 IHSLQKVLLDIQDNINI-------HTIERNSF----------VGLSFESVILWLNKNGIQ 167

Query: 406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLS 464
            EI     N   L  LNLS N     +P+++         LD S  ++       + NL 
Sbjct: 168 -EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK 226

Query: 465 FLNYLNLSNNNLNGEIPSSTQLQS 488
            L   +  N     ++P+  +L +
Sbjct: 227 KLRARSTYNLK---KLPTLEKLVA 247

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 32/221 (14%), Positives = 66/221 (29%), Gaps = 20/221 (9%)

Query: 118 KKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVS-GNQIYGGVPKFDSPSVPLITTPSLL 176
             L  ++IS   +   I    ++++ +   + +   N +      + +P       P+L 
Sbjct: 54  GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL-----LYINPEA-FQNLPNL- 106

Query: 177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW--PRLRMLNL 234
                +SN  +   +  +       S     L +  N     I             +L L
Sbjct: 107 -QYLLISNTGIK-HLPDVHKIH---SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL 161

Query: 235 GNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTW 294
             N        +             NN L  +    F   S    LD+    +  ++P++
Sbjct: 162 NKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSY 220

Query: 295 IGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS 335
             E   +L   +  + K          +L +L    + Y S
Sbjct: 221 GLENLKKLRARSTYNLKKLPTLE----KLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 43.3 bits (102), Expect = 1e-04
 Identities = 40/254 (15%), Positives = 66/254 (25%), Gaps = 50/254 (19%)

Query: 15  NQLGRFKTLRALDLSNNTVNGPIPLS-LGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLL 73
                F  L  +++S N V   I       +  L  + +        ++   F NL  L 
Sbjct: 48  GAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQ 107

Query: 74  VFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAK 133
                   +        +P      +                       LDI        
Sbjct: 108 YLLISNTGIKH------LPDV--HKIHSLQ----------------KVLLDIQDNINIHT 143

Query: 134 IPRG-FWNSIFQYDYLNVSGNQIYGGVPK--FDSPSVPLITTPSLLGSIFDLSNNALSGS 190
           I R  F    F+   L ++ N I   +    F+            L  +    NN L   
Sbjct: 144 IERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ---------LDELNLSDNNNLE-- 191

Query: 191 IFHLICQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG 248
                   + F        L +S+            N  +LR  +  N      LP ++ 
Sbjct: 192 ----ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLP-TLE 243

Query: 249 ALNSLMSLNLRNNR 262
            L +LM  +L    
Sbjct: 244 KLVALMEASLTYPS 257

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 5e-09
 Identities = 79/498 (15%), Positives = 155/498 (31%), Gaps = 120/498 (24%)

Query: 20  FKTLRALDLSNN--TVNGPIPLS--LGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
            +  + + L +   T      +S  L     L  L+L +N+L           + Q L  
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHC----VLQGLQ- 81

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPR----FPLWLQSQKKLYYLDISSTRIS 131
                           P  ++  L L++C L           L++   L  L +S   + 
Sbjct: 82  ---------------TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG 126

Query: 132 AK----IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNAL 187
                 +  G  +   + + L +    +     +  +    L   P        +SNN +
Sbjct: 127 DAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV--LRAKPDF--KELTVSNNDI 182

Query: 188 SGSIFHLICQG-ENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGNNNFTGS 242
           + +   ++CQG ++    +E LKL     + D    +     +   LR L LG+N     
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242

Query: 243 LPMSIGA-----LNSLMSLNLRNNRLS----GIIPTSFRNLSILKALDMGENEL----VG 289
               +        + L +L +    ++    G +    R    LK L +  NEL      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQLC----RLGSLQILDVAYNSLSGTIPRCIN 345
            +   + E   +L  L ++S  F             +   L  L ++ N L         
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE-------- 354

Query: 346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS 405
                        ++G+     G               L +  S+L   R + ++  + S
Sbjct: 355 -------------DAGVRELCQG---------------LGQPGSVL---RVLWLADCDVS 383

Query: 406 GE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS 461
                 +   +     L+ L+LS+N        + G+++ +ES+                
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCL-----GDAGILQLVESV--------------RQ 424

Query: 462 NLSFLNYLNLSNNNLNGE 479
               L  L L +   + E
Sbjct: 425 PGCLLEQLVLYDIYWSEE 442

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 51/292 (17%), Positives = 86/292 (29%), Gaps = 51/292 (17%)

Query: 12  HLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQI-----ANLEYLDLSNNKLNGTVSEI-- 64
            L + L      + L +SNN +N      L Q        LE L L +  +         
Sbjct: 161 PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLC 220

Query: 65  -HFLNLTQLLVFRAHGNSL---------VFKINPNWVPPFQLAFLELRSCHLGPR----F 110
               +   L       N L            ++P+     +L  L +  C +  +     
Sbjct: 221 GIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS----RLRTLWIWECGITAKGCGDL 276

Query: 111 PLWLQSQKKLYYLDISSTRISAK----IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPS 166
              L++++ L  L ++   +  +    +         Q + L V               S
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAACCSHFS 334

Query: 167 VPLITTPSLLGSIFDLSNNALSGSIFHLICQG-ENFSKNIEFLKLSKNHFSED------- 218
             L     L      +SNN L  +    +CQG       +  L L+    S+        
Sbjct: 335 SVLAQNRFL--LELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA 392

Query: 219 -IPDCWMNWPRLRMLNLGNNNFTGS----LPMSIGALNS-LMSLNLRNNRLS 264
            +         LR L+L NN    +    L  S+      L  L L +   S
Sbjct: 393 TLLAN----HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 43/274 (15%), Positives = 108/274 (39%), Gaps = 39/274 (14%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
            N   +   K++ ++ +    +    +  L+      T ++   +  LN+L+ L L++N+
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADL--DGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQ 74

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           ++ + P   +NL+ +  L++  N L  N+          +  L+L S +     P  L  
Sbjct: 75  ITDLAP--LKNLTKITELELSGNPLK-NVSAI--AGLQSIKTLDLTSTQITDVTP--LAG 127

Query: 323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
           L +LQ+L +  N ++      I+  + +         + + Y S G+ ++ +        
Sbjct: 128 LSNLQVLYLDLNQITN-----ISPLAGL---------TNLQYLSIGNAQVSD-------- 165

Query: 383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI 442
             +   + L+ + ++    N  S   P+   +L  L  ++L +N  +      +    ++
Sbjct: 166 --LTPLANLSKLTTLKADDNKISDISPLA--SLPNLIEVHLKNNQISD--VSPLANTSNL 219

Query: 443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
             +  +   ++ Q     +NL   N +   +   
Sbjct: 220 FIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.1 bits (133), Expect = 2e-08
 Identities = 44/267 (16%), Positives = 87/267 (32%), Gaps = 44/267 (16%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
                    +    + V   +  +   +  +  L      +  T+  +    L  L+   
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQ--YLNNLIGLE 69

Query: 77  AHGNSLVFKINPNWVPPF----QLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA 132
              N +        + P     ++  LEL    L       +   + +  LD++ST+I+ 
Sbjct: 70  LKDNQI------TDLAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITD 121

Query: 133 KIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG--S 190
             P    +++     L +  NQI        +   PL    +L      + N  +S    
Sbjct: 122 VTPLAGLSNL---QVLYLDLNQI--------TNISPLAGLTNL--QYLSIGNAQVSDLTP 168

Query: 191 IFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL 250
           + +L          +  LK   N  S DI     + P L  ++L NN  +   P  +   
Sbjct: 169 LANL--------SKLTTLKADDNKIS-DISPL-ASLPNLIEVHLKNNQISDVSP--LANT 216

Query: 251 NSLMSLNLRNNRLSGIIPTSFRNLSIL 277
           ++L  + L N  ++        NL + 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNNLVVP 243

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.1 bits (120), Expect = 8e-07
 Identities = 48/310 (15%), Positives = 107/310 (34%), Gaps = 83/310 (26%)

Query: 28  LSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKIN 87
                +N   P     +AN   +    + +  TV++     +T L  F     + V  I 
Sbjct: 4   TQPTAINVIFPDP--ALANAIKIAAGKSNVTDTVTQADLDGITTLSAF----GTGVTTIE 57

Query: 88  PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDY 147
                                     +Q    L  L++   +I+   P     ++ +   
Sbjct: 58  G-------------------------VQYLNNLIGLELKDNQITDLAPLK---NLTKITE 89

Query: 148 LNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEF 207
           L +SGN +                      ++  ++                   ++I+ 
Sbjct: 90  LELSGNPL---------------------KNVSAIAGL-----------------QSIKT 111

Query: 208 LKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGII 267
           L L+    ++  P   +    L++L L  N  T ++   +  L +L  L++ N ++S + 
Sbjct: 112 LDLTSTQITDVTPLAGL--SNLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQVSDLT 167

Query: 268 PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ 327
           P    NLS L  L   +N++  +I      +   L+ ++L++N+     P+      +L 
Sbjct: 168 P--LANLSKLTTLKADDNKIS-DISPL--ASLPNLIEVHLKNNQISDVSPLA--NTSNLF 220

Query: 328 ILDVAYNSLS 337
           I+ +   +++
Sbjct: 221 IVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 35/228 (15%), Positives = 77/228 (33%), Gaps = 59/228 (25%)

Query: 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
           AL + + +    + ++  +     +L  +  L      +   I     +  + L+ L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELK 71

Query: 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSG 368
            N+   D    L  L  +  L+++ N L       ++  + +                  
Sbjct: 72  DNQIT-DLA-PLKNLTKITELELSGNPLKN-----VSAIAGLQ----------------- 107

Query: 369 DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLF 428
                                  ++ +++D++    +   P+    L  LQ L L  N  
Sbjct: 108 -----------------------SI-KTLDLTSTQITDVTPLA--GLSNLQVLYLDLNQI 141

Query: 429 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
           T  I   +  + +++ L     Q+S   P  ++NLS L  L   +N +
Sbjct: 142 T-NIS-PLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.2 bits (138), Expect = 7e-09
 Identities = 33/154 (21%), Positives = 58/154 (37%), Gaps = 18/154 (11%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCW-MNWPRLRMLNLGNNNFTGSLPMSIGA---LNSLM 254
           ++       L LS N+ S    +        L  L L +N+    +     A   + +L 
Sbjct: 35  QSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS--EAFVPVPNLR 91

Query: 255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM---ILNLRSNK 311
            L+L +N L  +    F +L  L+ L +  N +V  +       F  +     L L  N+
Sbjct: 92  YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDR---NAFEDMAQLQKLYLSQNQ 147

Query: 312 ---FHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
              F  +      +L  L +LD++ N L   +P 
Sbjct: 148 ISRFPVELIKDGNKLPKLMLLDLSSNKLK-KLPL 180

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 8e-05
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 21/142 (14%)

Query: 181 DLSNNALS----GSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
            LS+N L+     +   +         N+ +L LS NH        + +   L +L L N
Sbjct: 70  LLSHNHLNFISSEAFVPV--------PNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYN 121

Query: 237 NNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRN---LSILKALDMGENELVGNIP 292
           N+    +  +    +  L  L L  N++S       ++   L  L  LD+  N+L   +P
Sbjct: 122 NHIV-VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKL-KKLP 179

Query: 293 TWIGETFSRLMILNLRSNKFHG 314
                   +L          H 
Sbjct: 180 ---LTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 9/88 (10%)

Query: 395 RSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQL 452
           R +D+S N+    +   + ++LQ L+ L L +N     +  N    M  ++ L  S NQ+
Sbjct: 91  RYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQI 148

Query: 453 SGQIP----QSMSNLSFLNYLNLSNNNL 476
           S + P    +  + L  L  L+LS+N L
Sbjct: 149 S-RFPVELIKDGNKLPKLMLLDLSSNKL 175

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 19/88 (21%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 391 LNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFS 448
           L  + S+ +S N+ +  I  E    +  L+ L+LS N     + + +   ++++E L   
Sbjct: 63  LTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLY 120

Query: 449 ANQLSGQIPQSMSNLSFLNYLNLSNNNL 476
            N +      +  +++ L  L LS N +
Sbjct: 121 NNHIVVVDRNAFEDMAQLQKLYLSQNQI 148

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 9e-09
 Identities = 37/143 (25%), Positives = 57/143 (39%), Gaps = 13/143 (9%)

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263
           +   L LS+N          M + RL  LNL     T  L +    L  L +L+L +N+L
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGT-LPVLGTLDLSHNQL 89

Query: 264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQ 319
              +P   + L  L  LD+  N L  ++P         L  L L+ N+      G     
Sbjct: 90  QS-LPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLT-- 145

Query: 320 LCRLGSLQILDVAYNSLSGTIPR 342
                 L+ L +A N+L+  +P 
Sbjct: 146 --PTPKLEKLSLANNNLT-ELPA 165

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 55.9 bits (135), Expect = 1e-08
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 13/143 (9%)

Query: 204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL 263
            +  L L +   ++ +       P L  L+L +N    SLP+    L +L  L++  NRL
Sbjct: 56  RLTQLNLDRAELTK-LQVDG-TLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112

Query: 264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQ 319
           + +   + R L  L+ L +  NEL   +P  +     +L  L+L +N       G     
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLTELPAGLLN-- 169

Query: 320 LCRLGSLQILDVAYNSLSGTIPR 342
              L +L  L +  NSL  TIP+
Sbjct: 170 --GLENLDTLLLQENSLY-TIPK 189

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 45/245 (18%), Positives = 83/245 (33%), Gaps = 56/245 (22%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI 291
           +N    N T +LP  +        L+L  N L      +    + L  L++   EL   +
Sbjct: 15  VNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKL 70

Query: 292 PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA 351
                     L  L+L  N+     P+    L +L +LDV++N L+ ++P          
Sbjct: 71  QVDGTLP--VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP---------- 116

Query: 352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVE 411
                    G                            +  L + + +  N     +P  
Sbjct: 117 --------LGAL------------------------RGLGEL-QELYLKGNELK-TLPPG 142

Query: 412 V-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469
           + T    L+ L+L++N  T  +P  +   + ++++L    N L   IP+       L + 
Sbjct: 143 LLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFA 200

Query: 470 NLSNN 474
            L  N
Sbjct: 201 FLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 46/242 (19%), Positives = 70/242 (28%), Gaps = 68/242 (28%)

Query: 45  ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSC 104
            +   L LS N L  T S    +  T+L         L        +             
Sbjct: 31  KDTTILHLSENLL-YTFSLATLMPYTRLTQLNLDRAELTK------LQVDG--------- 74

Query: 105 HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS 164
                      +   L  LD+S  ++ + +P      +     L+VS N++         
Sbjct: 75  -----------TLPVLGTLDLSHNQLQS-LPLLGQT-LPALTVLDVSFNRL--------- 112

Query: 165 PSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM 224
                    SL                  L          ++ L L  N      P    
Sbjct: 113 --------TSLPLGALR-----------GL--------GELQELYLKGNELKTLPPGLLT 145

Query: 225 NWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG 283
             P+L  L+L NNN T  LP  +   L +L +L L+ N L  I    F +   L    + 
Sbjct: 146 PTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHL-LPFAFLH 203

Query: 284 EN 285
            N
Sbjct: 204 GN 205

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 5e-08
 Identities = 39/319 (12%), Positives = 90/319 (28%), Gaps = 32/319 (10%)

Query: 159 VPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED 218
              F  P        +LL  + +   +    +          +  ++    L+       
Sbjct: 258 SVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHT 317

Query: 219 IPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK 278
               W      +   L  +               L    L   + + ++ +   +   L+
Sbjct: 318 FRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKST-VLQSELESCKELQ 375

Query: 279 ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG 338
            L+                     +IL +R+          L    +L+ +D     +  
Sbjct: 376 ELEPENK------------WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD----PMRA 419

Query: 339 TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSID 398
                + +   +  +      + +        ++            + +   L LV  +D
Sbjct: 420 AYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV----------LCHLEQLLLVTHLD 469

Query: 399 ISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG-QIP 457
           +S N     +P  +  L+ L+ L  S N     +   +  +  ++ L    N+L      
Sbjct: 470 LSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQSAAI 526

Query: 458 QSMSNLSFLNYLNLSNNNL 476
           Q + +   L  LNL  N+L
Sbjct: 527 QPLVSCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 7/112 (6%)

Query: 394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS 453
           VR + ++  + +  +   +  L  +  L+LSHN     +P  +  +R +E L  S N L 
Sbjct: 443 VRVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE 499

Query: 454 GQIPQSMSNLSFLNYLNLSNNNLNG--EIPSSTQLQSFGASSFAGNDLCGAP 503
             +   ++NL  L  L L NN L     I            +  GN LC   
Sbjct: 500 -NVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 52.7 bits (127), Expect = 9e-08
 Identities = 41/181 (22%), Positives = 74/181 (40%), Gaps = 29/181 (16%)

Query: 184 NNAL----------SGSIFHLICQGENFSK-------NIEFLKLSKNHFSEDIPDCWMNW 226
           N AL          + +   + C  +  +        + + L L  N  S      +   
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60

Query: 227 PRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
            +LR+L L +N    +LP  I   L +L +L + +N+L  +    F  L  L  L +  N
Sbjct: 61  TKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119

Query: 286 ELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQILDVAYNSLSGTIP 341
           +L  ++P  + ++ ++L  L+L  N+      G F     +L SL+ L +  N L   +P
Sbjct: 120 QLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFD----KLTSLKELRLYNNQLK-RVP 173

Query: 342 R 342
            
Sbjct: 174 E 174

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 3/107 (2%)

Query: 229 LRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL 287
           L  L L  N    SLP  +  +L  L  L+L  N L  +    F  L+ LK L +  N+L
Sbjct: 111 LAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL 169

Query: 288 VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYN 334
              +P    +  + L  L L +N+           L  L++L +  N
Sbjct: 170 -KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.7 bits (109), Expect = 2e-05
 Identities = 51/248 (20%), Positives = 91/248 (36%), Gaps = 60/248 (24%)

Query: 233 NLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP 292
           +  +   T ++P +I A      L+L++N+LS +   +F  L+ L+ L + +N+L   +P
Sbjct: 22  DCSSKKLT-AIPSNIPA--DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP 77

Query: 293 TWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
             I +    L  L +  NK      G F     +L +L  L +  N L  ++P       
Sbjct: 78  AGIFKELKNLETLWVTDNKLQALPIGVFD----QLVNLAELRLDRNQLK-SLP------- 125

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
                        +F                        +S+  L   + +  N     +
Sbjct: 126 -----------PRVF------------------------DSLTKL-TYLSLGYNELQ-SL 148

Query: 409 PVEV-TNLQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDFSANQLSGQIPQSMSNLSFL 466
           P  V   L  L+ L L +N    R+P+     +  +++L    NQL      +  +L  L
Sbjct: 149 PKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKL 207

Query: 467 NYLNLSNN 474
             L L  N
Sbjct: 208 KMLQLQEN 215

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 46/308 (14%), Positives = 94/308 (30%), Gaps = 57/308 (18%)

Query: 17  LGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQL 72
           L    +++ + LS NT+       +  ++    +LE  + S+        EI        
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEI-------P 80

Query: 73  LVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPR----FPLWLQSQKKLYYLDISST 128
              R    +L     P       L  + L     GP        +L     L +L + + 
Sbjct: 81  EALRLLLQAL--LKCPK------LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN 132

Query: 129 RISAK------------IPRGFWNSIFQYDYLNVSGNQIY-GGVPKFDSPSVPLITTPSL 175
            +  +                   +      +    N++  G + ++   +    +   L
Sbjct: 133 GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW---AKTFQSHRLL 189

Query: 176 LGSIFDLSNNALSGS-IFHLICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLR 230
                 +  N +    I HL+ +G  + + ++ L L  N F+      +     +WP LR
Sbjct: 190 --HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 247

Query: 231 MLNLGNNNFTG------SLPMSIGALNSLMSLNLRNNRLS-----GIIPTSFRNLSILKA 279
            L L +   +           S      L +L L+ N +       +       +  L  
Sbjct: 248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 307

Query: 280 LDMGENEL 287
           L++  N  
Sbjct: 308 LELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 49/341 (14%), Positives = 101/341 (29%), Gaps = 78/341 (22%)

Query: 21  KTLRALDLSNNTVNG----PIPLSLGQIANLEYLDLSNNKL--------------NGTVS 62
            ++    L  + +       +   L +  +++ + LS N +                 + 
Sbjct: 4   FSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLE 63

Query: 63  EIHF-------LNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPR----FP 111
              F       +        R    +L     P       L  + L     GP       
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQAL--LKCPK------LHTVRLSDNAFGPTAQEPLI 115

Query: 112 LWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLIT 171
            +L     L +L + +  +  +                           +  + +     
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQ------------------AGAKIARALQELAVNKKAKN 157

Query: 172 TPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED-----IPDCWMNW 226
            P L         N L         +     + +  +K+ +N    +     + +     
Sbjct: 158 APPL--RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC 215

Query: 227 PRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLS--GIIP-----TSFRNLS 275
             L++L+L +N FT     +L +++ +  +L  L L +  LS  G        +   N+ 
Sbjct: 216 QELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG 275

Query: 276 ILKALDMGENEL----VGNIPTWIGETFSRLMILNLRSNKF 312
            L+ L +  NE+    V  + T I E    L+ L L  N+F
Sbjct: 276 -LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 48.2 bits (115), Expect = 5e-06
 Identities = 45/405 (11%), Positives = 113/405 (27%), Gaps = 116/405 (28%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGN 236
            L  +A++      +        +++ + LS N    +    + +   +   L +    +
Sbjct: 10  SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-S 68

Query: 237 NNFTGSL----PMSIGAL-------NSLMSLNLRNNRLS--GIIP--TSFRNLSILKALD 281
           + FTG +    P ++  L         L ++ L +N        P        + L+ L 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 128

Query: 282 MGENE------------LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ-----LCRLG 324
           +  N             L         +    L  +    N+   +  ++          
Sbjct: 129 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWAKTFQSHR 187

Query: 325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL 384
            L  + +  N +                               G   ++ + L       
Sbjct: 188 LLHTVKMVQNGIR----------------------------PEGIEHLLLEGL------- 212

Query: 385 VEYNSILNLVRSIDISKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM- 439
             Y   L   + +D+  N F+      + + + +   L+ L L+  L +       G   
Sbjct: 213 -AYCQEL---KVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLS-----ARGAAA 263

Query: 440 ----------RSIESLDFSANQLSGQ----IPQSM-SNLSFLNYLNLSNNNLNGEIPSST 484
                       +++L    N++       +   +   +  L +L L+ N  + E     
Sbjct: 264 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE----- 318

Query: 485 QLQSFGASSFAGNDLCGAPLSNCTEKNILIPEDENGSGNEDDDED 529
                        ++     S      +   +D     +E+++++
Sbjct: 319 -----DDVVDEIREV----FSTRGRGELDELDDMEELTDEEEEDE 354

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 51/293 (17%)

Query: 229 LRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSG----IIPTSFRNLSILKAL 280
           +   +L  +  T     S+   +   +S+  + L  N +       +  +  +   L+  
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 281 DMGENELVGNIPTWIGE----------TFSRLMILNLRSNKFHGDFPIQLCRL----GSL 326
           +  +    G +   I E             +L  + L  N F       L         L
Sbjct: 66  EFSDIFT-GRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 124

Query: 327 QILDVAYNSLSGTIPRCINNFSAM----ATTDSSDPNSGIFYASSGDNEIVEDALLVTKG 382
           + L +  N L    P+     +      A    +     +     G N + E+  +    
Sbjct: 125 EHLYLHNNGLG---PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRL-ENGSMKEWA 180

Query: 383 FLVEYNSILNLVRSIDISKNNFSGE-----IPVEVTNLQGLQSLNLSHNLFTGR----IP 433
              + + +L    ++ + +N    E     +   +   Q L+ L+L  N FT      + 
Sbjct: 181 KTFQSHRLL---HTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA 237

Query: 434 DNIGVMRSIESLDFSANQLS-------GQIPQSMSNLSFLNYLNLSNNNLNGE 479
             +    ++  L  +   LS             + N+  L  L L  N +  +
Sbjct: 238 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIG-LQTLRLQYNEIELD 289

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 40/246 (16%), Positives = 71/246 (28%), Gaps = 51/246 (20%)

Query: 12  HLTNQLGRFKTLRALDLSNN--TVNGPIPLS--LGQIANLEYLDLSNNK----------- 56
            L   L +   L  + LS+N        PL   L +   LE+L L NN            
Sbjct: 85  LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR 144

Query: 57  -LNGTVSEIHFLNLTQLLVFRAHGNSL----------VFKINPNWVPPFQLAFLELRSCH 105
            L          N   L       N L           F+ +        L  +++    
Sbjct: 145 ALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL------LHTVKMVQNG 198

Query: 106 LGPR-----FPLWLQSQKKLYYLDISSTRISAK----IPRGF--WNSIFQYDYLNVSGNQ 154
           + P          L   ++L  LD+     +      +      W ++     L ++   
Sbjct: 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL---RELGLNDCL 255

Query: 155 IYG-GVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG-ENFSKNIEFLKLSK 212
           +   G       +   +    L      L  N +       +    +    ++ FL+L+ 
Sbjct: 256 LSARGAAAV-VDAFSKLENIGLQ--TLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312

Query: 213 NHFSED 218
           N FSE+
Sbjct: 313 NRFSEE 318

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.8 bits (122), Expect = 2e-07
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 10/135 (7%)

Query: 200 NFSKNIEFLKLSKNHFSEDIPD-CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
           +  +    L+L+ N F+       +   P+LR +N  NN  T     +    + +  + L
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HG 314
            +NRL  +    F+ L  LK L +  N +   +        S + +L+L  N+      G
Sbjct: 89  TSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPG 147

Query: 315 DFPIQLCRLGSLQIL 329
            F      L SL  L
Sbjct: 148 AFD----TLHSLSTL 158

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 37/142 (26%), Positives = 64/142 (45%), Gaps = 12/142 (8%)

Query: 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLS 264
           E L L     +      +    +L  LNL  N    +L   +   L  L +L L NN+L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 265 GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQL 320
            +    F +L+ L  L +G N+L   +P+ + +  ++L  L L +N+      G F    
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQSIPAGAFD--- 152

Query: 321 CRLGSLQILDVAYNSLSGTIPR 342
            +L +LQ L ++ N L  ++P 
Sbjct: 153 -KLTNLQTLSLSTNQLQ-SVPH 172

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 49/254 (19%), Positives = 93/254 (36%), Gaps = 41/254 (16%)

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
            +      NL   + T ++      LNS+  +   N+ +  +     + L  +  L +  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNG 77

Query: 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCI 344
           N+L  +I          L  L L  NK        L  L  L+ L + +N +S      I
Sbjct: 78  NKLT-DIKPL--ANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGIS-----DI 127

Query: 345 NNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF 404
           N    +       P     Y    +N+I +          +   S L  + ++ +  N  
Sbjct: 128 NGLVHL-------PQLESLYLG--NNKITD----------ITVLSRLTKLDTLSLEDNQI 168

Query: 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQSMSN 462
           S  +P+    L  LQ+L LS N     I D   +  +++++ L+  + +   +     SN
Sbjct: 169 SDIVPLA--GLTKLQNLYLSKN----HISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 463 LSFLNYLNLSNNNL 476
           L   N +  ++ +L
Sbjct: 223 LVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 45/275 (16%), Positives = 88/275 (32%), Gaps = 60/275 (21%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFL-NLTQLLVF 75
              F      +L   +V   +  +  ++ +++ +  +N+ +      +  +  L  +   
Sbjct: 20  DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDI----KSVQGIQYLPNVTKL 73

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP 135
             +GN L   I P                         L + K L +L +   ++   + 
Sbjct: 74  FLNGNKLT-DIKP-------------------------LANLKNLGWLFLDENKVK-DLS 106

Query: 136 RGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLI 195
                 + +   L++  N I        S    L+  P L      L NN ++  I    
Sbjct: 107 --SLKDLKKLKSLSLEHNGI--------SDINGLVHLPQL--ESLYLGNNKIT-DI---- 149

Query: 196 CQGENFS--KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSL 253
                 S    ++ L L  N  S DI        +L+ L L  N+ +  L  ++  L +L
Sbjct: 150 ---TVLSRLTKLDTLSLEDNQIS-DIVPL-AGLTKLQNLYLSKNHIS-DLR-ALAGLKNL 202

Query: 254 MSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
             L L +            NL +   +   +  LV
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 56/321 (17%), Positives = 111/321 (34%), Gaps = 59/321 (18%)

Query: 169 LITTPSLLGSIFDLSN------NALSG-SIFHLICQGENFSKNIEFLKLSKNHFS--EDI 219
            IT P+ +  IF          + L   S+   + Q E    +I+ +  + +     + I
Sbjct: 7   TITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNEL--NSIDQIIANNSDIKSVQGI 64

Query: 220 PDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279
                  P +  L L  N  T   P  +  L +L  L L  N++  +  +S ++L  LK+
Sbjct: 65  QYL----PNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS 116

Query: 280 LDMGENEL--VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
           L +  N +  +  +         +L  L L +NK   D  + L RL  L  L +  N +S
Sbjct: 117 LSLEHNGISDINGL-----VHLPQLESLYLGNNKIT-DITV-LSRLTKLDTLSLEDNQIS 169

Query: 338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI 397
                 I   + +             Y S   N I +          +   + L  +  +
Sbjct: 170 D-----IVPLAGL-------TKLQNLYLS--KNHISD----------LRALAGLKNLDVL 205

Query: 398 DISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 457
           ++       +     +NL    ++  +        P+ I      +  D+    +   +P
Sbjct: 206 ELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIIS-----DDGDYEKPNVKWHLP 258

Query: 458 QSMSNLSFLNYLNLSNNNLNG 478
           +  + +SF+ Y  ++      
Sbjct: 259 EFTNEVSFIFYQPVTIGKAKA 279

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 22/101 (21%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 227 PRLRMLNLGNNNFTGSLP-MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
             L  L + N      L    +  L  L +L +  + L  + P +F     L  L++  N
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90

Query: 286 ELVGNIPTWI-GETFS--RLMILNLRSNKFHGDFPIQLCRL 323
            L       +  +T     L  L L  N  H       C L
Sbjct: 91  AL-----ESLSWKTVQGLSLQELVLSGNPLHCS-----CAL 121

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 407 EIPVEVTNLQGLQSLNLSHNLFTGRIPDN-IGVMRSIESLDFSANQLSGQIPQSMSNLSF 465
           +    +   + L  L + +      +    +  +  + +L    + L    P +      
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 466 LNYLNLSNNNL 476
           L+ LNLS N L
Sbjct: 82  LSRLNLSFNAL 92

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.0 bits (103), Expect = 1e-04
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 242 SLPMSIGALNSLMSLNLRNNRLSGIIPT-SFRNLSILKALDMGENELVGNIPTWIGETFS 300
                +    +L  L + N +    +     R L  L+ L + ++ L   +         
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL 336
           RL  LNL  N        +  +  SLQ L ++ N L
Sbjct: 81  RLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 1e-04
 Identities = 16/89 (17%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 391 LNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPDNIGV-MRSIESLDFS 448
              +  + I        + +     L  L++L +  +     +  +       +  L+ S
Sbjct: 30  AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLS 88

Query: 449 ANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
            N L     +++  LS L  L LS N L+
Sbjct: 89  FNALESLSWKTVQGLS-LQELVLSGNPLH 116

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
             + L  N      P +      L  ++L NN++S + P +F+ L  L +L +  N++  
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93

Query: 290 NIPTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
            +P  + E    L +L L +NK        F      L +L +L +  N L  TI +
Sbjct: 94  ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ----DLHNLNLLSLYDNKLQ-TIAK 145

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 7/89 (7%)

Query: 203 KNIEFLKLSKNHFS--EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
            N+EFL L         ++P      P+L+ L L  N   G L M    L +L  LNL  
Sbjct: 49  VNLEFLSLINVGLISVSNLPKL----PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSG 104

Query: 261 NRLSGI-IPTSFRNLSILKALDMGENELV 288
           N+L  I      + L  LK+LD+   E+ 
Sbjct: 105 NKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 5e-05
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 3/83 (3%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
             +D  K+N  G+I         L+ L+L +      +  N+  +  ++ L+ S N++ G
Sbjct: 29  LVLDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG 85

Query: 455 QIPQSMSNLSFLNYLNLSNNNLN 477
            +      L  L +LNLS N L 
Sbjct: 86  GLDMLAEKLPNLTHLNLSGNKLK 108

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 7/88 (7%)

Query: 203 KNIEFLKLSKNHFS--EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
           + +EFL       +   ++P       +L+ L L +N  +G L +      +L  LNL  
Sbjct: 42  EELEFLSTINVGLTSIANLPKL----NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSG 97

Query: 261 NRLSGI-IPTSFRNLSILKALDMGENEL 287
           N++  +      + L  LK+LD+   E+
Sbjct: 98  NKIKDLSTIEPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 5e-05
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 3/83 (3%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG 454
             +D S++N  G++       + L+ L+  +   T  I  N+  +  ++ L+ S N++SG
Sbjct: 22  LVLDNSRSN-EGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG 78

Query: 455 QIPQSMSNLSFLNYLNLSNNNLN 477
            +         L +LNLS N + 
Sbjct: 79  GLEVLAEKCPNLTHLNLSGNKIK 101

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 63/441 (14%), Positives = 125/441 (28%), Gaps = 118/441 (26%)

Query: 91  VPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW------NSIFQ 144
           +  F+ AF++   C      P  + S++++ ++ +S   +S    R FW        + Q
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-GTLRLFWTLLSKQEEMVQ 80

Query: 145 ----------YDYL------------------NVSGNQIYGGVPKFDSPSVPLITTPSLL 176
                     Y +L                      +++Y     F   +V         
Sbjct: 81  KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS---RLQPY 137

Query: 177 GSIFDLSNNALSG--SIFHLICQG-ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLN 233
             +      AL       +++  G     K    L +  ++  +   D  + W     LN
Sbjct: 138 LKL----RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW-----LN 188

Query: 234 LGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT 293
           L N N   ++   +  L   +  N   +R         R       +   + EL      
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHSSNIKLR-------IHSIQAEL------ 234

Query: 294 WIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS----A 349
                  RL+      N               L +L    N       +  N F+     
Sbjct: 235 ------RRLLKSKPYEN--------------CLLVLLNVQN------AKAWNAFNLSCKI 268

Query: 350 MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
           + TT        +    S            +     +    L L++ +D        ++P
Sbjct: 269 LLTTR----FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL-LLKYLDCRP----QDLP 319

Query: 410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL--- 466
            EV     L +     ++    I D +           + ++L+  I  S++ L      
Sbjct: 320 REV-----LTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372

Query: 467 -NYLNLS--NNNLNGEIPSST 484
             +  LS    + +  IP+  
Sbjct: 373 KMFDRLSVFPPSAH--IPTIL 391

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 29/100 (29%), Positives = 42/100 (42%), Gaps = 10/100 (10%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI 291
           L L  N FT  +P  +     L  ++L NNR+S +   SF N++ L  L +  N L   I
Sbjct: 36  LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-RCI 93

Query: 292 PTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQ 327
           P    +    L +L+L  N       G F      L +L 
Sbjct: 94  PPRTFDGLKSLRLLSLHGNDISVVPEGAFN----DLSALS 129

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 5e-05
 Identities = 25/111 (22%), Positives = 36/111 (32%), Gaps = 12/111 (10%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS--EDIPDCWMNWPRLRMLNLGNNN 238
           DL    +   I +L   G       + +  S N     +  P       RL+ L + NN 
Sbjct: 25  DLRGYKIP-VIENL---GATL-DQFDAIDFSDNEIRKLDGFPLL----RRLKTLLVNNNR 75

Query: 239 FTGSLPMSIGALNSLMSLNLRNNRLSGI-IPTSFRNLSILKALDMGENELV 288
                     AL  L  L L NN L  +       +L  L  L +  N + 
Sbjct: 76  ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN 450
               R +D+        I      L    +++ S N    ++ D   ++R +++L  + N
Sbjct: 18  AVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNN 74

Query: 451 QLSGQIPQSMSNLSFLNYLNLSNNNLN 477
           ++          L  L  L L+NN+L 
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLV 101

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 14/111 (12%)

Query: 231 MLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI--IPTSFRNLSILKALDMGENEL- 287
           M+ L       +             L+LR  ++  I  +  +        A+D  +NE+ 
Sbjct: 1   MVKLTAELIEQA--AQYTNAVRDRELDLRGYKIPVIENLGATLDQF---DAIDFSDNEIR 55

Query: 288 -VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS 337
            +   P        RL  L + +N+           L  L  L +  NSL 
Sbjct: 56  KLDGFPL-----LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV 101

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 54/299 (18%), Positives = 96/299 (32%), Gaps = 56/299 (18%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQI-----ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF 75
             + +LDLS N +     + L Q      A++  L+LS N L       +   L Q+L  
Sbjct: 22  HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSL----GFKNSDELVQILA- 76

Query: 76  RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWL-----QSQKKLYYLDISSTRI 130
                            P  +  L L    L  +    L          +  LD+     
Sbjct: 77  ---------------AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDF 121

Query: 131 SAK----IPRGFWNSIFQYDYLNVSGNQI-YGGVPKFDSPSVPLITTPSLLGSIFDLSNN 185
           S+K      + F N       LN+ GN +      +       L   P+ + S+ +L  N
Sbjct: 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL---IQILAAIPANVNSL-NLRGN 177

Query: 186 ALSGSIFHLICQG-ENFSKNIEFLKLSKNHFSED-----IPDCWMNWPRLRMLNLGNNNF 239
            L+      + +   +   ++  L LS N                    +  LNL  N  
Sbjct: 178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

Query: 240 TGS----LPMSIGALNSLMSLNLRNNRLSGI-------IPTSFRNLSILKALDMGENEL 287
            G     L +   +L  L ++ L  + +  +       +  +F N+  +  +D    E+
Sbjct: 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 45/339 (13%), Positives = 107/339 (31%), Gaps = 58/339 (17%)

Query: 182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM--------NWPRLRMLN 233
           ++         + + +  +    +  L LS N+         +            +  LN
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLY---SISTVELIQAFANTPASVTSLN 57

Query: 234 LGNNNFTGSLPMSIGAL-----NSLMSLNLRNNRLS-----GIIPTSFRNLSILKALDMG 283
           L  N+        +  +      ++ SLNL  N LS      ++ T       +  LD+G
Sbjct: 58  LSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 284 ENEL----VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRL-----GSLQILDVAYN 334
            N+                 + +  LNLR N        +L ++      ++  L++  N
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

Query: 335 SLSGTIPRCINNFSAMATTDS-SDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNL 393
           +L+        + +        +   + +       N +   +            + +  
Sbjct: 178 NLA--------SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV-- 227

Query: 394 VRSIDISKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDN-------IGVMRSI 442
             S+++  N   G     + +   +L+ LQ++ L +++      +           ++ I
Sbjct: 228 -VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 443 ESLDFSANQLSG----QIPQSMSNLSF-LNYLNLSNNNL 476
             +D +  ++       I   +  LS   +  +L N  L
Sbjct: 287 ILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCL 325

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 17/115 (14%)

Query: 229 LRMLNLGNNNFTGSLPMSIGA---LNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN 285
           +R L LG N         I A   L +L  L L  N+L  +    F  L+ LK L + EN
Sbjct: 65  VRYLALGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN 119

Query: 286 ELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQILDVAYNSL 336
           +L  ++P  + +  + L  LNL  N+      G F     +L +L  LD++YN L
Sbjct: 120 QLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFD----KLTNLTELDLSYNQL 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 10/117 (8%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
             L+L  N+           L SL  L L  N+L  +    F  L+ L  L++  N+L  
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ- 89

Query: 290 NIPTWIGETFSRLMILNLRSNKF----HGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
           ++P  + +  ++L  L L +N+      G F     +L  L+ L +  N L  ++P 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQSLPDGVFD----KLTQLKDLRLYQNQLK-SVPD 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 30/135 (22%), Positives = 56/135 (41%), Gaps = 12/135 (8%)

Query: 203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR 262
            N     L K   ++ +    +    ++  N  N+N   SL   +    +L  L+L +N+
Sbjct: 19  ANAVKQNLGKQSVTDLVSQKEL--SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQ 74

Query: 263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR 322
           +S + P   ++L+ L+ L +  N     +    G   + L  L L +N+        L  
Sbjct: 75  ISDLSP--LKDLTKLEELSVNRN----RLKNLNGIPSACLSRLFLDNNELRDTDS--LIH 126

Query: 323 LGSLQILDVAYNSLS 337
           L +L+IL +  N L 
Sbjct: 127 LKNLEILSIRNNKLK 141

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 9e-04
 Identities = 32/256 (12%), Positives = 74/256 (28%), Gaps = 68/256 (26%)

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
                   NLG  + T  +      L+ + + N  N+ +  +     +  + LK L +  
Sbjct: 17  GLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSH 72

Query: 285 NEL--VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR 342
           N++  +  +     +  ++L  L++  N+      I       L  L +  N L      
Sbjct: 73  NQISDLSPL-----KDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRD---- 120

Query: 343 CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN 402
             ++   +                                         NL   + I  N
Sbjct: 121 -TDSLIHL----------------------------------------KNL-EILSIRNN 138

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQSM 460
                + +    L  L+ L+L  N     I +   +  ++ +  +D +  +   +  +  
Sbjct: 139 KLKSIVMLG--FLSKLEVLDLHGN----EITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQ 192

Query: 461 SNLSFLNYLNLSNNNL 476
             L   N +   +   
Sbjct: 193 PELYITNTVKDPDGRW 208

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 12/127 (9%)

Query: 206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI-GALNSLMSLNLRNNRLS 264
           + L L  N  ++  P  + +   L+ L LG+N    +LP+ +  +L  L  L+L  N+L+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 265 GIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF----HGDFPIQL 320
            +    F  L  LK L M  N+L   +P  I E  + L  L L  N+     HG F    
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGI-ERLTHLTHLALDQNQLKSIPHGAFD--- 156

Query: 321 CRLGSLQ 327
            RL SL 
Sbjct: 157 -RLSSLT 162

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 8e-04
 Identities = 13/97 (13%), Positives = 36/97 (37%), Gaps = 14/97 (14%)

Query: 397 IDISKNNFSGEIPVEV-------TNLQGLQSLNLSHNLFTGRIPDNIG---VMRSIESLD 446
           + +   ++  +  + V            L+ L +        + +      ++  +E++D
Sbjct: 226 LYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMD 285

Query: 447 FSANQLSG----QIPQSMSNLSFLNYLNLSNNNLNGE 479
            SA  L+      +   +  +  L ++N+  N L+ E
Sbjct: 286 ISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	596
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.96
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.96
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.96
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.96
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.92
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.92
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.81
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.76
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.72
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.68
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.66
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.64
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.64
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.63
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.63
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.56
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.52
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.38
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.33
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.27
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	99.21
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.19
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.17
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.85
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.83
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.46
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.26
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.2
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.95
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.59
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.16
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.03
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.47
2ks1_B	44	Epidermal growth factor receptor; ERBB1, ERBB2, tr	88.97
2l2t_A	44	Receptor tyrosine-protein kinase ERBB-4; transmemb	87.96
2jwa_A	44	Receptor tyrosine-protein kinase ERBB-2; transmemb	85.44
2k1k_A	38	Ephrin type-A receptor 1; EPHA1, receptor tyrosine	84.88

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.3e-59  Score=519.70  Aligned_cols=496  Identities=30%  Similarity=0.433  Sum_probs=362.9

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      |+|++|++++.+|. ++++++|++|++++|.+++.+|..+..+++|++|++++|++++.++..   .+++|++|++++|.
T Consensus       205 L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~  280 (768)
T 3rgz_A          205 LDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENK  280 (768)
T ss_dssp             EECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC---CCTTCCEEECCSSE
T ss_pred             EECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc---ccCCCCEEECcCCc
Confidence            67888888877776 888888888888888888777888888888888888888887666642   77888888888888


Q ss_pred             eeeEeCCCCCCC-CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353           82 LVFKINPNWVPP-FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP  160 (596)
Q Consensus        82 l~~~~~~~~~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (596)
                      +++..+..+... ++|++|++++|++.+..|..++++++|++|++++|.+++.+|...+..+++|++|++++|++++..|
T Consensus       281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p  360 (768)
T 3rgz_A          281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP  360 (768)
T ss_dssp             EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred             cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence            887777777664 8899999999988888888888899999999999988888887766668889999999998887776


Q ss_pred             CCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc
Q 044353          161 KFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT  240 (596)
Q Consensus       161 ~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  240 (596)
                      ..+.....       .-+.+++++|.+.+..+..++.  ..+++|++|++++|.+.+.+|..+..+++|++|++++|.++
T Consensus       361 ~~l~~l~~-------~L~~L~Ls~N~l~~~~~~~~~~--~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~  431 (768)
T 3rgz_A          361 ESLTNLSA-------SLLTLDLSSNNFSGPILPNLCQ--NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLS  431 (768)
T ss_dssp             TTHHHHTT-------TCSEEECCSSEEEEECCTTTTC--STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             HHHHhhhc-------CCcEEEccCCCcCCCcChhhhh--cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCccc
Confidence            65432210       0155666666666554433321  11345666666666666566666666666666666666666


Q ss_pred             ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc
Q 044353          241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL  320 (596)
Q Consensus       241 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  320 (596)
                      +..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+++.+|..+
T Consensus       432 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          432 GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS-NCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGG
T ss_pred             CcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHh-cCCCCCEEEccCCccCCcCChHH
Confidence            66666666666666666666666666666666666666666666666655555554 56666666666666666666666


Q ss_pred             CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc-CCCC------------Ccee--------------
Q 044353          321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA-SSGD------------NEIV--------------  373 (596)
Q Consensus       321 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~------------~~~~--------------  373 (596)
                      +.+++|++|++++|++++.+|..+.+++.|+.++++.+...-..+ ....            ..+.              
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            666666666666666666666666666666666665543210000 0000            0000              


Q ss_pred             -----------------------eeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcc
Q 044353          374 -----------------------EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTG  430 (596)
Q Consensus       374 -----------------------~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  430 (596)
                                             ........+..+..+..+++|+.||+++|.+++.+|..++.+++|+.|+|++|+++|
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence                                   000011223334455678899999999999999999999999999999999999999


Q ss_pred             cCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCCCCCC
Q 044353          431 RIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNCTE  509 (596)
Q Consensus       431 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~~c~~  509 (596)
                      .+|+.++.+++|+.|||++|++++.+|..+..++.|++||+++|+++|.+|...++.++...++.||| +||.|+..|..
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~  750 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDP  750 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCS
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 99999888864


Q ss_pred             CC
Q 044353          510 KN  511 (596)
Q Consensus       510 ~~  511 (596)
                      ..
T Consensus       751 ~~  752 (768)
T 3rgz_A          751 SN  752 (768)
T ss_dssp             CC
T ss_pred             Cc
Confidence            43

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-53  Score=479.89  Aligned_cols=486  Identities=18%  Similarity=0.183  Sum_probs=353.6

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccC-CccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPI-PLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG   79 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~   79 (596)
                      +|||++|.+++..|..|+++++|++|++++|...+.+ |.+|.++++|++|+|++|.+.+..|. .|.++++|++|+|++
T Consensus        28 ~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~Ls~  106 (844)
T 3j0a_A           28 RLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD-AFQGLFHLFELRLYF  106 (844)
T ss_dssp             EEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT-SSCSCSSCCCEECTT
T ss_pred             EEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh-HccCCcccCEeeCcC
Confidence            3799999999988999999999999999999555444 78899999999999999999855454 899999999999999


Q ss_pred             CeeeeEeCCC--CCCCCCccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCChhHHhcC--CCCcEEEccccc
Q 044353           80 NSLVFKINPN--WVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPRGFWNSI--FQYDYLNVSGNQ  154 (596)
Q Consensus        80 n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l--~~L~~L~l~~n~  154 (596)
                      |.+.+..+..  +..+++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..+.. +  ++|+.|+++.|.
T Consensus       107 n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~-l~~~~L~~L~L~~n~  185 (844)
T 3j0a_A          107 CGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP-LQGKTLSFFSLAANS  185 (844)
T ss_dssp             CCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH-HHHCSSCCCEECCSB
T ss_pred             CCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc-ccCCccceEECCCCc
Confidence            9988755554  8899999999999999987655 57899999999999999998777766543 3  789999999998


Q ss_pred             ccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCC--------------------------------C-
Q 044353          155 IYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN--------------------------------F-  201 (596)
Q Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~--------------------------------~-  201 (596)
                      +.+..+..+........  ...-+.+++++|.+.+..+..+...+.                                . 
T Consensus       186 l~~~~~~~~~~~~~~~~--~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l  263 (844)
T 3j0a_A          186 LYSRVSVDWGKCMNPFR--NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGL  263 (844)
T ss_dssp             SCCCCCCCCCSSSCTTT--TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTT
T ss_pred             cccccccchhhcCCccc--cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhcc
Confidence            88766655443321110  111167778877766555444332211                                1 


Q ss_pred             -CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353          202 -SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       202 -~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  280 (596)
                       .++|+.|++++|.+.+..+..|..+++|+.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|+.|
T Consensus       264 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  343 (844)
T 3j0a_A          264 ARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYI  343 (844)
T ss_dssp             TTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEE
T ss_pred             ccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEE
Confidence             2578888888888887778888888888888888888887778888888888888888888887778888888888888


Q ss_pred             EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353          281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS  360 (596)
Q Consensus       281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~  360 (596)
                      ++++|.+. .++...+..+++|++|++++|.+++. +    .+++|+.|++++|+++ .+|..   ...++.++++.+..
T Consensus       344 ~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          344 DLQKNHIA-IIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRL  413 (844)
T ss_dssp             ECCSCCCC-CCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCC
T ss_pred             ECCCCCCC-ccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc---ccccceeecccCcc
Confidence            88888886 55554444688888888888887732 2    2566677777766666 34432   22333333333322


Q ss_pred             CccccC--CCCCceeeeeEEEeccc----eeecccccccccEEEccCCccc-----ccCCccccCcccCCeeeccCccCc
Q 044353          361 GIFYAS--SGDNEIVEDALLVTKGF----LVEYNSILNLVRSIDISKNNFS-----GEIPVEVTNLQGLQSLNLSHNLFT  429 (596)
Q Consensus       361 ~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~n~l~  429 (596)
                      ......  ...........+.....    .......+++|+.|++++|.++     +..+..|.++++|+.|+|++|+++
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~  493 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN  493 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHT
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCccc
Confidence            111000  00000011111111110    0112334677888888888886     344566888899999999999999


Q ss_pred             ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCC
Q 044353          430 GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPL  504 (596)
Q Consensus       430 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~  504 (596)
                      +..|..|..+++|+.|+|++|++++..+..+.  ++|+.|++++|++++..|..  +..+..+++.+|| .|.|+.
T Consensus       494 ~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~~C~c~~  565 (844)
T 3j0a_A          494 SLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKFICECEL  565 (844)
T ss_dssp             TCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECCCCSSSC
T ss_pred             ccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCccccccc
Confidence            88888889999999999999999977776665  78999999999998887754  5678888899999 787754

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=3.8e-53  Score=470.96  Aligned_cols=470  Identities=29%  Similarity=0.420  Sum_probs=315.0

Q ss_pred             eeecCCCccccCCcc---ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEcc
Q 044353            2 LFLRRSQFYGHLTNQ---LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAH   78 (596)
Q Consensus         2 l~L~~n~l~~~~~~~---l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~   78 (596)
                      |||++|++++..|..   +.++++|++|++++|.+++..+  +..+++|++|+|++|++.+.++.  +.++++|++|+++
T Consensus       156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~--l~~l~~L~~L~Ls  231 (768)
T 3rgz_A          156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF--LGDCSALQHLDIS  231 (768)
T ss_dssp             EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB--CTTCCSCCEEECC
T ss_pred             EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc--cccCCCCCEEECc
Confidence            677777777666655   5566666666666666554433  24555555555555555544442  5555555555555


Q ss_pred             CCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccccc
Q 044353           79 GNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGG  158 (596)
Q Consensus        79 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~  158 (596)
                      +|.+++..+..+..+++|++|++++|.+.+..|..  .+++|++|++++|.+++.+|..++..+++|++|++++|++++.
T Consensus       232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~  309 (768)
T 3rgz_A          232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGA  309 (768)
T ss_dssp             SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEEC
T ss_pred             CCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCc
Confidence            55555444455555555555555555554433332  4455555555555554444444443334555555555555444


Q ss_pred             CCCCCCCCCCc--cc--------------cCCCCC-ceEEcccCccccccccccccCCCCCC-CccEEeCcCCcCCCCCC
Q 044353          159 VPKFDSPSVPL--IT--------------TPSLLG-SIFDLSNNALSGSIFHLICQGENFSK-NIEFLKLSKNHFSEDIP  220 (596)
Q Consensus       159 ~~~~~~~~~~~--~~--------------~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~  220 (596)
                      .|..+......  ++              +..++. +.+++++|.+.+.++..+..    ++ +|+.|++++|.+.+..|
T Consensus       310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~----l~~~L~~L~Ls~N~l~~~~~  385 (768)
T 3rgz_A          310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTN----LSASLLTLDLSSNNFSGPIL  385 (768)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHH----HTTTCSEEECCSSEEEEECC
T ss_pred             cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHh----hhcCCcEEEccCCCcCCCcC
Confidence            44332221110  00              011122 56666666666555544333    33 67777777777766666


Q ss_pred             cccCC--CCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhh
Q 044353          221 DCWMN--WPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET  298 (596)
Q Consensus       221 ~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  298 (596)
                      ..+..  +++|++|++++|.+++.+|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.+|..+. .
T Consensus       386 ~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~-~  464 (768)
T 3rgz_A          386 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM-Y  464 (768)
T ss_dssp             TTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-G
T ss_pred             hhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHc-C
Confidence            65555  66777777777777777777777777777777777777777777777777777777777777767776665 5


Q ss_pred             cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEE
Q 044353          299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL  378 (596)
Q Consensus       299 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~  378 (596)
                      +++|++|++++|.+++.+|..+..+++|++|++++|++++.+|..++.++.|+.++++.+...                 
T Consensus       465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-----------------  527 (768)
T 3rgz_A          465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS-----------------  527 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-----------------
T ss_pred             CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc-----------------
Confidence            777777777777777777777777777777777777777777777777777777777765432                 


Q ss_pred             EeccceeecccccccccEEEccCCcccccCCc------------------------------------------------
Q 044353          379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPV------------------------------------------------  410 (596)
Q Consensus       379 ~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~------------------------------------------------  410 (596)
                         +..+..+..+++|+.|++++|.+++.+|.                                                
T Consensus       528 ---~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  604 (768)
T 3rgz_A          528 ---GNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL  604 (768)
T ss_dssp             ---EECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGG
T ss_pred             ---CcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhh
Confidence               12233445577788888887777765554                                                


Q ss_pred             ----------------------cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 044353          411 ----------------------EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY  468 (596)
Q Consensus       411 ----------------------~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  468 (596)
                                            .+..+++|+.|+|++|+++|.+|..++.++.|+.|+|++|++++.+|..++.+++|+.
T Consensus       605 ~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~  684 (768)
T 3rgz_A          605 NRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI  684 (768)
T ss_dssp             GGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             hccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCE
Confidence                                  3445678999999999999999999999999999999999999999999999999999


Q ss_pred             EecccccCccCCCCC-CccCccccccccCCCCCCC
Q 044353          469 LNLSNNNLNGEIPSS-TQLQSFGASSFAGNDLCGA  502 (596)
Q Consensus       469 L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~lc~~  502 (596)
                      ||+++|+++|.+|.. ..+..++.+++++|++.|.
T Consensus       685 LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~  719 (768)
T 3rgz_A          685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGP  719 (768)
T ss_dssp             EECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEE
T ss_pred             EECCCCcccCcCChHHhCCCCCCEEECcCCccccc
Confidence            999999999999876 6788899999999986654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5e-50  Score=436.05  Aligned_cols=489  Identities=19%  Similarity=0.160  Sum_probs=330.5

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..|..|+++++|++|++++|.+++..|.+|.++++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus        37 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~n  115 (606)
T 3t6q_A           37 CLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAET-ALSGPKALKHLFFIQT  115 (606)
T ss_dssp             EEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTT-TTSSCTTCCEEECTTS
T ss_pred             EEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChh-hhcccccccEeecccc
Confidence            379999999998899999999999999999999988899999999999999999999855454 8999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCc--EEEccccccccc
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYD--YLNVSGNQIYGG  158 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~--~L~l~~n~l~~~  158 (596)
                      .++...+..+..+++|++|++++|++.+.....+..+++|++|++++|.+++..+..+ ..+++|+  .|++++|++++.
T Consensus       116 ~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~l~L~l~~n~l~~~  194 (606)
T 3t6q_A          116 GISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGI  194 (606)
T ss_dssp             CCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHH-HTTTTCCSEEEECTTCCCCEE
T ss_pred             CcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhh-hhhcccceeEEecCCCccCcc
Confidence            9988777889999999999999999987655555569999999999999986445444 5578898  899999999887


Q ss_pred             CCCCCCCCCCccccCCCCCceEEcccCc---------------------ccc----ccccccccCCCCCCCccEEeCcCC
Q 044353          159 VPKFDSPSVPLITTPSLLGSIFDLSNNA---------------------LSG----SIFHLICQGENFSKNIEFLKLSKN  213 (596)
Q Consensus       159 ~~~~~~~~~~~~~~~~~~~~~l~ls~n~---------------------l~~----~~~~~~~~~l~~~~~L~~L~l~~n  213 (596)
                      .+..+... ..        +.++++++.                     +.+    .+.......+.. .+++.|++++|
T Consensus       195 ~~~~~~~~-~L--------~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~-~~L~~L~l~~n  264 (606)
T 3t6q_A          195 EPGAFDSA-VF--------QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCE-MSVESINLQKH  264 (606)
T ss_dssp             CTTTTTTC-EE--------EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGG-SEEEEEECTTC
T ss_pred             ChhHhhhc-cc--------cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhc-CceeEEEeecC
Confidence            76654321 00        222222221                     000    000000000000 14555555555


Q ss_pred             cCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCch
Q 044353          214 HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPT  293 (596)
Q Consensus       214 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  293 (596)
                      .+.+..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++.
T Consensus       265 ~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  343 (606)
T 3t6q_A          265 YFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGT  343 (606)
T ss_dssp             CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCS
T ss_pred             ccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccch
Confidence            555555555555555555555555555 4455555555555555555555555555555555555555555555544544


Q ss_pred             hhhhhcccccEEEccCCcCcCcC--CcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccC--CCC
Q 044353          294 WIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYAS--SGD  369 (596)
Q Consensus       294 ~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~--~~~  369 (596)
                      ..+..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..|..+..++.|+.++++.+........  ...
T Consensus       344 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  423 (606)
T 3t6q_A          344 GCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQN  423 (606)
T ss_dssp             STTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTT
T ss_pred             hhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhC
Confidence            43334555555555555555333  44455555555555555555555555555555555555554432211110  001


Q ss_pred             CceeeeeEEE---eccceeecccccccccEEEccCCccccc---CCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353          370 NEIVEDALLV---TKGFLVEYNSILNLVRSIDISKNNFSGE---IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  443 (596)
Q Consensus       370 ~~~~~~~~~~---~~~~~~~~~~~~~~L~~L~Ls~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  443 (596)
                      ........+.   .....+..+..+++|+.|++++|.+++.   .+..+..+++|++|+|++|++++..|..|+.+++|+
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence            1111111111   1122233455678899999999988762   335688889999999999999888888899999999


Q ss_pred             EEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC-CCCCC
Q 044353          444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       444 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +|++++|++++..|+.+..++.| .|++++|++++..|.. ..++.++.+++.+|| .|.++
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999998888889999999 9999999998776654 557778888899998 66543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=6.8e-49  Score=432.88  Aligned_cols=497  Identities=20%  Similarity=0.150  Sum_probs=341.2

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus        29 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n  107 (680)
T 1ziw_A           29 VLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTELHLMSN  107 (680)
T ss_dssp             EEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEEECCSS
T ss_pred             EEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEEECCCC
Confidence            3799999999888888999999999999999999888999999999999999999998 777667999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHH-hcCCCCcEEEcccccccccC
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW-NSIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~-~~l~~L~~L~l~~n~l~~~~  159 (596)
                      .+....+..|..+++|++|++++|.+.+..+..++++++|++|++++|.+++..+..+. ..+++|++|++++|++++..
T Consensus       108 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~  187 (680)
T 1ziw_A          108 SIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS  187 (680)
T ss_dssp             CCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBC
T ss_pred             ccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccC
Confidence            99887778899999999999999999988888899999999999999999865554432 13478999999999887766


Q ss_pred             CCCCCCCCC-----------------------------ccc-------------cCCC--C-CceEEcccCccccccccc
Q 044353          160 PKFDSPSVP-----------------------------LIT-------------TPSL--L-GSIFDLSNNALSGSIFHL  194 (596)
Q Consensus       160 ~~~~~~~~~-----------------------------~~~-------------~~~~--~-~~~l~ls~n~l~~~~~~~  194 (596)
                      +..+.....                             .+.             +..+  . -+.+++++|.+.+..+. 
T Consensus       188 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~-  266 (680)
T 1ziw_A          188 PGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGND-  266 (680)
T ss_dssp             TTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTT-
T ss_pred             hhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcc-
Confidence            543322110                             000             0000  1 14555555555443322 


Q ss_pred             cccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc-----cCC----ccCcCCCCCcEEEccCCcccc
Q 044353          195 ICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG-----SLP----MSIGALNSLMSLNLRNNRLSG  265 (596)
Q Consensus       195 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~----~~~~~l~~L~~L~L~~n~l~~  265 (596)
                         .++.+++|+.|++++|.+.+..|..|..+++|+.|++++|...+     .+|    ..|..+++|++|++++|.+.+
T Consensus       267 ---~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~  343 (680)
T 1ziw_A          267 ---SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG  343 (680)
T ss_dssp             ---TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCC
T ss_pred             ---cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCC
Confidence               23345666666666666655555555544444444444432221     111    134455556666666666665


Q ss_pred             cCChhhcCCCCCCEEEccCC----------------------------cccccCchhhhhhcccccEEEccCCcCcCcCC
Q 044353          266 IIPTSFRNLSILKALDMGEN----------------------------ELVGNIPTWIGETFSRLMILNLRSNKFHGDFP  317 (596)
Q Consensus       266 ~~~~~~~~l~~L~~L~L~~n----------------------------~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  317 (596)
                      ..+..|.++++|++|++++|                            ++.+..|..+ ..+++|++|++++|.+.+.++
T Consensus       344 ~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~  422 (680)
T 1ziw_A          344 IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAF-SWLGHLEVLDLGLNEIGQELT  422 (680)
T ss_dssp             CCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTT-TTCTTCCEEECCSSCCEEECC
T ss_pred             CChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhh-hCCCCCCEEeCCCCcCccccC
Confidence            55555555555555554443                            3332223233 356777777777777765444


Q ss_pred             -cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc---cccCCCCCceeeeeEEE---eccceeecccc
Q 044353          318 -IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI---FYASSGDNEIVEDALLV---TKGFLVEYNSI  390 (596)
Q Consensus       318 -~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  390 (596)
                       ..+.++++|++|++++|++.+..+..+..++.|+.++++.+....   ...............+.   ........+..
T Consensus       423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~  502 (680)
T 1ziw_A          423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG  502 (680)
T ss_dssp             SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence             566777777777777777776666677777777777766654321   11111111111112211   11222334566


Q ss_pred             cccccEEEccCCcccccCC--------ccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          391 LNLVRSIDISKNNFSGEIP--------VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                      +++|+.|++++|.+++..+        ..|.++++|+.|+|++|+++...+..|..+++|+.|++++|+++++.+..|..
T Consensus       503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~  582 (680)
T 1ziw_A          503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNN  582 (680)
T ss_dssp             CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred             ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCC
Confidence            8889999999999875422        23788899999999999998555567899999999999999999877788889


Q ss_pred             CCCCCEEecccccCccCCCCCC--ccCccccccccCCC-CCCCC
Q 044353          463 LSFLNYLNLSNNNLNGEIPSST--QLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       463 l~~L~~L~ls~N~l~~~~~~~~--~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +++|+.|++++|++++..+...  .++.++.+++.+|| .|+|+
T Consensus       583 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          583 QVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             CTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             CCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999999999987766542  57788899999999 77665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3e-48  Score=422.05  Aligned_cols=463  Identities=18%  Similarity=0.100  Sum_probs=367.7

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..+..|+++++|++|++++|.+++..|.+|.++++|++|+|++|++++..|. .|.++++|++|++++|
T Consensus        36 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L~~L~L~~n  114 (606)
T 3vq2_A           36 NIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPG-SFSGLTSLENLVAVET  114 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTT-SSTTCTTCCEEECTTS
T ss_pred             EEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChh-hcCCcccCCEEEccCC
Confidence            378999999988888999999999999999999988888899999999999999999844454 8999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCC----CcEEEcccccc
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQ----YDYLNVSGNQI  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l~~n~l  155 (596)
                      .+....+..+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+.. +++    +..+++++|.+
T Consensus       115 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~~l~~L~l~~n~l  193 (606)
T 3vq2_A          115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQF-LRENPQVNLSLDMSLNPI  193 (606)
T ss_dssp             CCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHH-HHHCTTCCCEEECTTCCC
T ss_pred             ccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhh-hhccccccceeeccCCCc
Confidence            9987777789999999999999999876 56888999999999999999998765554432 333    44788888888


Q ss_pred             cccCCCCCCCCCCccccCCCCCceEEcccCccccc---------------------------------------------
Q 044353          156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGS---------------------------------------------  190 (596)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~---------------------------------------------  190 (596)
                      ++..+..+... ..        +.+++++|.+.+.                                             
T Consensus       194 ~~~~~~~~~~~-~L--------~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  264 (606)
T 3vq2_A          194 DFIQDQAFQGI-KL--------HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTID  264 (606)
T ss_dssp             CEECTTTTTTC-EE--------EEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEE
T ss_pred             ceeCcccccCc-ee--------eeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHh
Confidence            76554443221 11        4455555543210                                             


Q ss_pred             ---------cccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          191 ---------IFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       191 ---------~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                               .....+ .+..+++|+.|++++|.+.. +| .+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|
T Consensus       265 ~l~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n  338 (606)
T 3vq2_A          265 EFRLTYTNDFSDDIV-KFHCLANVSAMSLAGVSIKY-LE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMN  338 (606)
T ss_dssp             EEEECCCTTCCGGGG-SCGGGTTCSEEEEESCCCCC-CC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESC
T ss_pred             heecccccccccccc-ccccCCCCCEEEecCccchh-hh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCC
Confidence                     001111 14457889999999999865 44 788889999999999999 4777 45 8899999999999


Q ss_pred             cccccCChhhcCCCCCCEEEccCCccccc--CchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGN--IPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT  339 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  339 (596)
                      ...+..  .+..+++|+.|++++|.+.+.  ++..+. .+++|++|++++|.+++ +|..+..+++|+.|++++|.+.+.
T Consensus       339 ~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~  414 (606)
T 3vq2_A          339 KGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDL-GTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRV  414 (606)
T ss_dssp             SSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHH-CCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEEST
T ss_pred             cCccch--hhccCCCCCEEECcCCccCCCcchhhhhc-cCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCc
Confidence            655433  567899999999999998744  255555 78999999999999884 667888999999999999999877


Q ss_pred             CC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc-cCCccccCccc
Q 044353          340 IP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG-EIPVEVTNLQG  417 (596)
Q Consensus       340 ~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~  417 (596)
                      .| ..+..+++|+.++++.+.....                    .+..+..+++|++|++++|.+++ .+|..|..+++
T Consensus       415 ~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          415 TEFSAFLSLEKLLYLDISYTNTKID--------------------FDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             TTTTTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cChhhhhccccCCEEECcCCCCCcc--------------------chhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            77 6888999999999987654221                    12234557889999999999987 47888999999


Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccC-ccccccccC
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ-SFGASSFAG  496 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~-~l~~~~~~~  496 (596)
                      |++|+|++|++++..|..++.+++|++|++++|++++..|..+..+++|+.|++++|+++...+....++ .++.+++.+
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~  554 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTN  554 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCS
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccC
Confidence            9999999999998888999999999999999999998889999999999999999999985444435555 488889999


Q ss_pred             CC-CCCCCC
Q 044353          497 ND-LCGAPL  504 (596)
Q Consensus       497 n~-lc~~~~  504 (596)
                      || .|.++.
T Consensus       555 N~~~c~c~~  563 (606)
T 3vq2_A          555 NSVACICEH  563 (606)
T ss_dssp             CCCCCSSTT
T ss_pred             CCcccCCcc
Confidence            99 676654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-48  Score=422.94  Aligned_cols=447  Identities=19%  Similarity=0.178  Sum_probs=326.8

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..|++|+++++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus        61 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~-~l~~~~~~~l~~L~~L~L~~n  139 (606)
T 3t6q_A           61 FLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGIS-SIDFIPLHNQKTLESLYLGSN  139 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCS-CGGGSCCTTCTTCCEEECCSS
T ss_pred             EEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcc-cCCcchhccCCcccEEECCCC
Confidence            4799999999999999999999999999999999888999999999999999999998 554448999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc--EEEcccCcCcccCChhHHhcCCCCcEEEcccc-----
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY--YLDISSTRISAKIPRGFWNSIFQYDYLNVSGN-----  153 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n-----  153 (596)
                      .+.....+.+..+++|++|++++|.+.+..+..++.+++|+  .|++++|.+++..+..+ . ...|+.|++++|     
T Consensus       140 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~-~-~~~L~~L~l~~~~~~~~  217 (606)
T 3t6q_A          140 HISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAF-D-SAVFQSLNFGGTQNLLV  217 (606)
T ss_dssp             CCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTT-T-TCEEEEEECTTCSCHHH
T ss_pred             cccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHh-h-hccccccccCCchhHHH
Confidence            99876666677799999999999999988899999999999  89999999987655543 2 234555555544     


Q ss_pred             -----------------------------------------------cccccCCCCCCCCCCccccCCCCC-ceEEcccC
Q 044353          154 -----------------------------------------------QIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNN  185 (596)
Q Consensus       154 -----------------------------------------------~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n  185 (596)
                                                                     .+++..+..+..         ++. +.+++++|
T Consensus       218 ~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~---------l~~L~~L~l~~n  288 (606)
T 3t6q_A          218 IFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHC---------FSGLQELDLTAT  288 (606)
T ss_dssp             HHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTT---------CTTCSEEECTTS
T ss_pred             HhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhcc---------ccCCCEEeccCC
Confidence                                                           333322222211         112 55566665


Q ss_pred             ccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCc-cCcCCCCCcEEEccCCccc
Q 044353          186 ALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPM-SIGALNSLMSLNLRNNRLS  264 (596)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~  264 (596)
                      .++ .    ++..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.++. .+..+++|++|++++|.+.
T Consensus       289 ~l~-~----lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  363 (606)
T 3t6q_A          289 HLS-E----LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIE  363 (606)
T ss_dssp             CCS-C----CCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCC
T ss_pred             ccC-C----CChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccc
Confidence            554 1    222334456666666666666655555566666666666666665533333 3556666666666666665


Q ss_pred             ccC--ChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc-ccCCCCCCcEEeCCCCcCcccCC
Q 044353          265 GII--PTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI-QLCRLGSLQILDVAYNSLSGTIP  341 (596)
Q Consensus       265 ~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~  341 (596)
                      +..  +..+..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+. .+..+++|++|++++|.+++..|
T Consensus       364 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  442 (606)
T 3t6q_A          364 TSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK-ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE  442 (606)
T ss_dssp             EEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT-TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT
T ss_pred             cccCcchhcccCCCCCEEECCCCcCCcCCHHHhc-CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH
Confidence            444  45566666666666666666533333333 566666666666666544333 35566666666666666665566


Q ss_pred             ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCee
Q 044353          342 RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL  421 (596)
Q Consensus       342 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  421 (596)
                      ..+..+++|+.++++.+......                 ......+..+++|+.|++++|.+++..|..|..+++|++|
T Consensus       443 ~~~~~l~~L~~L~L~~n~l~~~~-----------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  505 (606)
T 3t6q_A          443 QLFDGLPALQHLNLQGNHFPKGN-----------------IQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV  505 (606)
T ss_dssp             TTTTTCTTCCEEECTTCBCGGGE-----------------ECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             HHHhCCCCCCEEECCCCCCCccc-----------------cccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence            66666666666666554321100                 0011335668999999999999998889999999999999


Q ss_pred             eccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          422 NLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       422 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      +|++|++++..|+.+..++.| .|++++|++++..|..+..+++|+.|++++|++.|.|+..
T Consensus       506 ~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  566 (606)
T 3t6q_A          506 DLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI  566 (606)
T ss_dssp             ECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred             ECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence            999999999999999999999 9999999999988999999999999999999999998854

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=7.8e-47  Score=416.43  Aligned_cols=481  Identities=19%  Similarity=0.159  Sum_probs=338.5

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|.+++..|.+++++++|++|++++|.++...+.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus        53 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n  131 (680)
T 1ziw_A           53 SLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ-KIKNNPFVKQKNLITLDLSHN  131 (680)
T ss_dssp             EEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCSCTTTTCTTCCEEECCSS
T ss_pred             EEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccC-ccChhHccccCCCCEEECCCC
Confidence            3799999999999999999999999999999999776678999999999999999998 565558999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhc--CCCCCcEEEcccCcCcccCChhHHh------------------
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQ--SQKKLYYLDISSTRISAKIPRGFWN------------------  140 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~------------------  140 (596)
                      .+.+..+..+..+++|++|++++|.+++..+..+.  .+++|+.|++++|.+++..+..+..                  
T Consensus       132 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~  211 (680)
T 1ziw_A          132 GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSL  211 (680)
T ss_dssp             CCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHH
T ss_pred             cccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhh
Confidence            99988888899999999999999999887777654  5688999999988887655543321                  


Q ss_pred             --------cCCCCcEEEcccccccccCCCCCCCC----CCccc-------------cCCCCC-ceEEcccCccccccccc
Q 044353          141 --------SIFQYDYLNVSGNQIYGGVPKFDSPS----VPLIT-------------TPSLLG-SIFDLSNNALSGSIFHL  194 (596)
Q Consensus       141 --------~l~~L~~L~l~~n~l~~~~~~~~~~~----~~~~~-------------~~~~~~-~~l~ls~n~l~~~~~~~  194 (596)
                              ..++|+.|++++|.+++..+..+...    ++.++             +..++. +.+++++|.+.+..+..
T Consensus       212 ~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (680)
T 1ziw_A          212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS  291 (680)
T ss_dssp             HHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT
T ss_pred             HHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh
Confidence                    01345555555555555444433221    11111             111222 67777777776544322


Q ss_pred             cc-----------------------------cCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc--ccC
Q 044353          195 IC-----------------------------QGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT--GSL  243 (596)
Q Consensus       195 ~~-----------------------------~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~  243 (596)
                      +.                             ..++.+++|++|++++|.+.+..+..|..+++|++|++++|.+.  ...
T Consensus       292 ~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~  371 (680)
T 1ziw_A          292 LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT  371 (680)
T ss_dssp             TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEEC
T ss_pred             hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcc
Confidence            11                             14556778888888888888777777888888888877776533  112


Q ss_pred             CccCcCC--CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          244 PMSIGAL--NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       244 ~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      ...|..+  ++|+.|++++|.+.++.+..|..+++|+.|++++|.+.+.+|...+..+++|++|++++|.+.+..+..+.
T Consensus       372 ~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  451 (680)
T 1ziw_A          372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA  451 (680)
T ss_dssp             TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT
T ss_pred             hhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh
Confidence            2222222  35666666666666666667777777777777777776556654444666777777777766655555555


Q ss_pred             CCCCCcEEeCCCCcCc--ccCCccccccccCcccCCCCCCCCccccC-CCCCceeeeeEEEeccc-----------eeec
Q 044353          322 RLGSLQILDVAYNSLS--GTIPRCINNFSAMATTDSSDPNSGIFYAS-SGDNEIVEDALLVTKGF-----------LVEY  387 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~~~  387 (596)
                      .+++|+.|++++|.+.  +.+|..+..+++|+.++++.+........ ...........+.....           ....
T Consensus       452 ~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  531 (680)
T 1ziw_A          452 LVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYF  531 (680)
T ss_dssp             TCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCT
T ss_pred             cCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchh
Confidence            5556666666655554  34455555555555555555443322211 11111111111111100           1123


Q ss_pred             ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc-CCCCC
Q 044353          388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS-NLSFL  466 (596)
Q Consensus       388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L  466 (596)
                      +..+++|+.|++++|.+++..+..|.++++|+.|+|++|++++..+..|..+++|+.|++++|++++..+..+. .+++|
T Consensus       532 ~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L  611 (680)
T 1ziw_A          532 LKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNL  611 (680)
T ss_dssp             TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTC
T ss_pred             hcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhccccccc
Confidence            56789999999999999955556799999999999999999977778889999999999999999988888787 78999


Q ss_pred             CEEecccccCccCCCC
Q 044353          467 NYLNLSNNNLNGEIPS  482 (596)
Q Consensus       467 ~~L~ls~N~l~~~~~~  482 (596)
                      +.+++++|++.|.|+.
T Consensus       612 ~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          612 TELDMRFNPFDCTCES  627 (680)
T ss_dssp             SEEECTTCCCCBCCCC
T ss_pred             CEEEccCCCcccCCcc
Confidence            9999999999999986

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=7e-48  Score=432.96  Aligned_cols=451  Identities=20%  Similarity=0.197  Sum_probs=354.4

Q ss_pred             CeeecCCCccccC-CccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccCh-hhhhcCCCCcEEEcc
Q 044353            1 SLFLRRSQFYGHL-TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSE-IHFLNLTQLLVFRAH   78 (596)
Q Consensus         1 ~l~L~~n~l~~~~-~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~~l~~L~~L~L~   78 (596)
                      +|||++|.+.+.+ |.+|+++++|++|+|++|.+++..|.+|.++++|++|+|++|.+++.++. ..|.++++|++|+++
T Consensus        52 ~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls  131 (844)
T 3j0a_A           52 LLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLS  131 (844)
T ss_dssp             EEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEE
T ss_pred             EEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECC
Confidence            4799999766665 88999999999999999999998999999999999999999999865554 348999999999999


Q ss_pred             CCeeeeEeC-CCCCCCCCccEEEccCCCCCCCcchhhcCC--CCCcEEEcccCcCcccCChhHHhcCC------CCcEEE
Q 044353           79 GNSLVFKIN-PNWVPPFQLAFLELRSCHLGPRFPLWLQSQ--KKLYYLDISSTRISAKIPRGFWNSIF------QYDYLN  149 (596)
Q Consensus        79 ~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~l~~n~i~~~~~~~~~~~l~------~L~~L~  149 (596)
                      +|.+.+..+ ..|..+++|++|++++|.+.+..+..+..+  ++|+.|++++|.+.+..+..+.. +.      .|+.|+
T Consensus       132 ~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~  210 (844)
T 3j0a_A          132 KNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILD  210 (844)
T ss_dssp             SCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEB
T ss_pred             CCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEe
Confidence            999987655 478999999999999999998888888877  89999999999998777665422 22      499999


Q ss_pred             cccccccccCCCCCCCCCCc-----cc----------------------cCCC--CC-ceEEcccCccccccccccccCC
Q 044353          150 VSGNQIYGGVPKFDSPSVPL-----IT----------------------TPSL--LG-SIFDLSNNALSGSIFHLICQGE  199 (596)
Q Consensus       150 l~~n~l~~~~~~~~~~~~~~-----~~----------------------~~~~--~~-~~l~ls~n~l~~~~~~~~~~~l  199 (596)
                      +++|.+++..+..+......     +.                      +...  .. +.+++++|.+.+..+.    .+
T Consensus       211 Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~----~~  286 (844)
T 3j0a_A          211 VSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR----VF  286 (844)
T ss_dssp             CSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC----CS
T ss_pred             cCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh----hh
Confidence            99998877665443322110     00                      0111  22 8899999988765443    34


Q ss_pred             CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       200 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      +.+++|+.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|+.|++++|.+..+.+..|..+++|++
T Consensus       287 ~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~  366 (844)
T 3j0a_A          287 ETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQT  366 (844)
T ss_dssp             SSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCE
T ss_pred             hcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCE
Confidence            55899999999999999988999999999999999999999888999999999999999999999888889999999999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcc----------------------cCCCCCCcEEeCCCCcCc
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ----------------------LCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~  337 (596)
                      |++++|.++ .++.     +++|+.|++++|.++ .+|..                      +..+++|+.|++++|+++
T Consensus       367 L~Ls~N~l~-~i~~-----~~~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  439 (844)
T 3j0a_A          367 LDLRDNALT-TIHF-----IPSIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS  439 (844)
T ss_dssp             EEEETCCSC-CCSS-----CCSCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCC
T ss_pred             EECCCCCCC-cccC-----CCCcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccc
Confidence            999999987 4442     567778887777776 33322                      224445555555555544


Q ss_pred             ccCCc-cccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcc
Q 044353          338 GTIPR-CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQ  416 (596)
Q Consensus       338 ~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  416 (596)
                      +..+. .+..+++|+.++++.+.......               .+.....+..+++|+.|+|++|.+++..|..|.+++
T Consensus       440 ~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~---------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  504 (844)
T 3j0a_A          440 SCSGDQTPSENPSLEQLFLGENMLQLAWE---------------TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLT  504 (844)
T ss_dssp             CCCSSSSSCSCTTCCBCEEESCCCSSSCC---------------SCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCC
T ss_pred             ccccccccccCCccccccCCCCccccccc---------------cccchhhhcCcccccEEECCCCcccccChhHccchh
Confidence            32221 23334444444444433211100               012223456689999999999999998999999999


Q ss_pred             cCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          417 GLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       417 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      +|++|+|++|++++..+..+.  ++|+.|++++|++++..|..|   .+|+.+++++|++.|.|+..
T Consensus       505 ~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C~c~~~  566 (844)
T 3j0a_A          505 ALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFICECELS  566 (844)
T ss_dssp             SCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCCSSSCC
T ss_pred             hhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CCcCEEEecCCCcccccccH
Confidence            999999999999977777665  899999999999999888776   47999999999999999854

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.5e-46  Score=401.44  Aligned_cols=444  Identities=20%  Similarity=0.166  Sum_probs=304.9

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..+.+|+.+++|++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus        32 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n  110 (570)
T 2z63_A           32 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET  110 (570)
T ss_dssp             EEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred             EEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccccccc
Confidence            3789999999888889999999999999999999888888999999999999999998 555458999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC----cEEEcccccc
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY----DYLNVSGNQI  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L----~~L~l~~n~l  155 (596)
                      .+.......+..+++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+ ..+++|    +.+++++|.+
T Consensus       111 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~~~~~L~l~~n~l  189 (570)
T 2z63_A          111 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPM  189 (570)
T ss_dssp             CCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGG-HHHHTCTTCCCEEECTTCCC
T ss_pred             ccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHc-cchhccchhhhhcccCCCCc
Confidence            9887766678999999999999999887 468889999999999999999986555544 346677    8899999998


Q ss_pred             cccCCCCCCCCCCccccCCCCCceEEcccCcccc----------------------------------------------
Q 044353          156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG----------------------------------------------  189 (596)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~----------------------------------------------  189 (596)
                      .+..+..+... ..        +.+++++|....                                              
T Consensus       190 ~~~~~~~~~~~-~L--------~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~  260 (570)
T 2z63_A          190 NFIQPGAFKEI-RL--------HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE  260 (570)
T ss_dssp             CEECTTTTTTC-EE--------EEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred             eecCHHHhccC-cc--------eeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence            87666544321 10        233333321100                                              


Q ss_pred             --------ccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          190 --------SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       190 --------~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                              ......+..+..+++|+.|++++|.+.+ +|..+..+ +|++|++++|.+. .+|.  ..+++|+.|++++|
T Consensus       261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n  335 (570)
T 2z63_A          261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSN  335 (570)
T ss_dssp             EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESC
T ss_pred             hhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCC
Confidence                    0011112233345667777777776653 55555666 6777777777666 4443  34566777777777


Q ss_pred             cccccCChhhcCCCCCCEEEccCCcccccC--chhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGNI--PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT  339 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  339 (596)
                      .+.+..+.  ..+++|++|++++|.+.+..  +..+. .+++|++|++++|.+.+..+ .+..+++|++|++++|.+.+.
T Consensus       336 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~-~~~~l~~L~~L~l~~n~l~~~  411 (570)
T 2z63_A          336 KGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDF-GTTSLKYLDLSFNGVITMSS-NFLGLEQLEHLDFQHSNLKQM  411 (570)
T ss_dssp             BSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHH-TCSCCCEEECCSCSEEEEEE-EEETCTTCCEEECTTSEEESC
T ss_pred             cccccccc--ccCCCCCEEeCcCCccCcccccccccc-ccCccCEEECCCCccccccc-cccccCCCCEEEccCCccccc
Confidence            66644433  56677777777777665322  34443 56777777777776664333 366677777777777776655


Q ss_pred             CC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc-ccCCccccCccc
Q 044353          340 IP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS-GEIPVEVTNLQG  417 (596)
Q Consensus       340 ~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~  417 (596)
                      .| ..+..+++|+.++++.+.....                    ....+..+++|+.|++++|.++ +.+|..+..+++
T Consensus       412 ~~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          412 SEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             TTSCTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             cchhhhhcCCCCCEEeCcCCccccc--------------------chhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            44 4566666666666665532111                    1122334666777777777765 456666777777


Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST  484 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~  484 (596)
                      |++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+.|++++|+++|.||...
T Consensus       472 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~  538 (570)
T 2z63_A          472 LTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID  538 (570)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred             CCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence            7777777777766666667777777777777777776666666677777777777777777766553

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=3.7e-46  Score=405.54  Aligned_cols=448  Identities=19%  Similarity=0.140  Sum_probs=371.4

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..|.+|+++++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|
T Consensus        60 ~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n  138 (606)
T 3vq2_A           60 WLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA-SLESFPIGQLITLKKLNVAHN  138 (606)
T ss_dssp             EEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCC-CSSSSCCTTCTTCCEEECCSS
T ss_pred             EEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccc-cccccccCCCCCCCEEeCCCC
Confidence            3799999999999999999999999999999999888999999999999999999998 555447999999999999999


Q ss_pred             eeee-EeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc----EEEcccCcCcccCChhHHhcCCCCcEEEcccccc
Q 044353           81 SLVF-KINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY----YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI  155 (596)
Q Consensus        81 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  155 (596)
                      .+.. ..+..+..+++|++|++++|++.+..+..++.+++|+    .|++++|.+++ ++...+.. .+|+.|++++|.+
T Consensus       139 ~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~-~~~~~~~~-~~L~~L~L~~n~~  216 (606)
T 3vq2_A          139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQDQAFQG-IKLHELTLRGNFN  216 (606)
T ss_dssp             CCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCE-ECTTTTTT-CEEEEEEEESCCS
T ss_pred             cccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcce-eCcccccC-ceeeeeeccCCcc
Confidence            9986 4578899999999999999999988787777665554    89999999984 55554453 3899999999876


Q ss_pred             cccC-CCCCC-----------------------------CCC---------------CccccC---CCCC-ceEEcccCc
Q 044353          156 YGGV-PKFDS-----------------------------PSV---------------PLITTP---SLLG-SIFDLSNNA  186 (596)
Q Consensus       156 ~~~~-~~~~~-----------------------------~~~---------------~~~~~~---~~~~-~~l~ls~n~  186 (596)
                      ++.. +..+.                             ...               -.-..|   .+.. +.++++++.
T Consensus       217 ~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  296 (606)
T 3vq2_A          217 SSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS  296 (606)
T ss_dssp             CHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCC
T ss_pred             chhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCcc
Confidence            5210 00000                             000               000011   1222 778888887


Q ss_pred             cccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccccc
Q 044353          187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI  266 (596)
Q Consensus       187 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~  266 (596)
                      +.. ++     .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+++.
T Consensus       297 ~~~-l~-----~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~  365 (606)
T 3vq2_A          297 IKY-LE-----DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFS  365 (606)
T ss_dssp             CCC-CC-----CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEE
T ss_pred             chh-hh-----hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCC
Confidence            753 22     456688999999999999 5677 45 9999999999999655443  577899999999999999876


Q ss_pred             --CChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCcc
Q 044353          267 --IPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRC  343 (596)
Q Consensus       267 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~  343 (596)
                        .+..+..+++|++|++++|.+. .+|..+. .+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..
T Consensus       366 ~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  443 (606)
T 3vq2_A          366 GCCSYSDLGTNSLRHLDLSFNGAI-IMSANFM-GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGI  443 (606)
T ss_dssp             EECCHHHHCCSCCCEEECCSCSEE-EECCCCT-TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTT
T ss_pred             cchhhhhccCCcccEeECCCCccc-cchhhcc-CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhh
Confidence              3788999999999999999997 5775555 79999999999999997777 68899999999999999999999999


Q ss_pred             ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeec
Q 044353          344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL  423 (596)
Q Consensus       344 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  423 (596)
                      +..+++|+.++++.+....                   ...+..+..+++|+.|++++|.+++..|..|.++++|++|+|
T Consensus       444 ~~~l~~L~~L~l~~n~l~~-------------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  504 (606)
T 3vq2_A          444 FLGLTSLNTLKMAGNSFKD-------------------NTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM  504 (606)
T ss_dssp             TTTCTTCCEEECTTCEEGG-------------------GEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred             hcCCCCCCEEECCCCcCCC-------------------cchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence            9999999999998764321                   012334566899999999999999999999999999999999


Q ss_pred             cCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC-CCCEEecccccCccCCCCCC
Q 044353          424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPSST  484 (596)
Q Consensus       424 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~~~~~~  484 (596)
                      ++|++++..|..++.+++|++|++++|+++ .+|..+..++ +|+.|++++|++.|.|+..+
T Consensus       505 s~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~  565 (606)
T 3vq2_A          505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQK  565 (606)
T ss_dssp             CSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred             CCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence            999999888999999999999999999999 5666688887 59999999999999998653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=7.3e-46  Score=403.08  Aligned_cols=410  Identities=18%  Similarity=0.267  Sum_probs=307.6

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCccccc---------------------------------CCccCc------
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGP---------------------------------IPLSLG------   42 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~---------------------------------~~~~~~------   42 (596)
                      |+|++|++.|.+|++++++++|++|+|++|.+...                                 .|..+.      
T Consensus        86 L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l  165 (636)
T 4eco_A           86 LSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC  165 (636)
T ss_dssp             EECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHH
T ss_pred             EEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHH
Confidence            78999999999999999999999999999865210                                 000110      


Q ss_pred             -------------CCCCCCEEECc--CCcCccccChhhhhcCCCCcEEEccCCeeeeE-----------------eCCCC
Q 044353           43 -------------QIANLEYLDLS--NNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK-----------------INPNW   90 (596)
Q Consensus        43 -------------~l~~L~~L~Ls--~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~~~~~   90 (596)
                                   ....++.+.+.  +|++++ +|. .|.++++|++|++++|.+++.                 +|..+
T Consensus       166 ~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~-~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l  243 (636)
T 4eco_A          166 INSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSK-AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL  243 (636)
T ss_dssp             HHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC
T ss_pred             hhcCccccccccccccchhhhhhccccCCCcc-CCH-HHhcccCCCEEECcCCccccccccccccccccchhcccCchhh
Confidence                         11122222222  567776 887 788999999999999998875                 78888


Q ss_pred             C--CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCc-Ccc-cCChhHHhc-----CCCCcEEEcccccccccCCC
Q 044353           91 V--PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR-ISA-KIPRGFWNS-----IFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        91 ~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~~~-----l~~L~~L~l~~n~l~~~~~~  161 (596)
                      .  .+++|++|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+...     +++|++|++++|+++ .+|.
T Consensus       244 ~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~  322 (636)
T 4eco_A          244 KWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPV  322 (636)
T ss_dssp             CGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCC
T ss_pred             hhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCc
Confidence            8  89999999999999888889899999999999999998 887 788777542     378999999999887 4544


Q ss_pred             --CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCC-CcEEEcccc
Q 044353          162 --FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRMLNLGNN  237 (596)
Q Consensus       162 --~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n  237 (596)
                        .+...         .. +.+++++|.+.|.++ .    ++.+++|+.|++++|.+. .+|..+..+++ |++|++++|
T Consensus       323 ~~~l~~l---------~~L~~L~L~~N~l~g~ip-~----~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          323 ETSLQKM---------KKLGMLECLYNQLEGKLP-A----FGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             HHHHTTC---------TTCCEEECCSCCCEEECC-C----CEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             hhhhccC---------CCCCEEeCcCCcCccchh-h----hCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence              33322         22 667777777776665 2    334678888888888887 56777888887 888888888


Q ss_pred             cccccCCccCcCCC--CCcEEEccCCcccccCChhhc-------CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353          238 NFTGSLPMSIGALN--SLMSLNLRNNRLSGIIPTSFR-------NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR  308 (596)
Q Consensus       238 ~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  308 (596)
                      .++ .+|..+..++  +|+.|++++|.+.+..|..+.       .+++|++|++++|.+. .+|..++..+++|++|+++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence            887 6777776654  788888888888877777777       6778888888888887 7777777667888888888


Q ss_pred             CCcCcCcCCcc-cCCC-------CCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353          309 SNKFHGDFPIQ-LCRL-------GSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT  380 (596)
Q Consensus       309 ~n~l~~~~~~~-~~~l-------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~  380 (596)
                      +|.++ .+|.. +...       ++|++|++++|.++ .+|..+..                                  
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~----------------------------------  509 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA----------------------------------  509 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST----------------------------------
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh----------------------------------
Confidence            88887 44443 3322       27888888888887 56655430                                  


Q ss_pred             ccceeecccccccccEEEccCCcccccCCccccCcccCCeeec------cCccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353          381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL------SHNLFTGRIPDNIGVMRSIESLDFSANQLSG  454 (596)
Q Consensus       381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  454 (596)
                              ..+++|+.|+|++|.+++ +|..+..+++|++|+|      ++|++.+.+|..++.+++|++|+|++|++. 
T Consensus       510 --------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-  579 (636)
T 4eco_A          510 --------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-  579 (636)
T ss_dssp             --------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-
T ss_pred             --------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-
Confidence                    014457888888888886 7888888888888888      457777788888888888888888888884 


Q ss_pred             cCCccccCCCCCCEEecccccCccC
Q 044353          455 QIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       455 ~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      .+|..+.  ++|+.|++++|++.+.
T Consensus       580 ~ip~~~~--~~L~~L~Ls~N~l~~~  602 (636)
T 4eco_A          580 KVNEKIT--PNISVLDIKDNPNISI  602 (636)
T ss_dssp             BCCSCCC--TTCCEEECCSCTTCEE
T ss_pred             ccCHhHh--CcCCEEECcCCCCccc
Confidence            6666554  7888888888888754

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=4.1e-44  Score=386.80  Aligned_cols=458  Identities=21%  Similarity=0.199  Sum_probs=368.6

Q ss_pred             eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353            3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL   82 (596)
Q Consensus         3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l   82 (596)
                      +-++.+++ .+|..+.  +++++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|.+
T Consensus        13 ~c~~~~l~-~ip~~l~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~L~~n~l   88 (570)
T 2z63_A           13 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI   88 (570)
T ss_dssp             ECCSSCCS-SCCSSSC--SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC
T ss_pred             EeCCCCcc-ccCCCcc--ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-ccCcccccCchhCCEEeCcCCcC
Confidence            34445555 4565543  57999999999999888889999999999999999998 56555899999999999999999


Q ss_pred             eeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcc-cCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           83 VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA-KIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      +...+..|..+++|++|++++|++.+..+..++++++|++|++++|.+++ .+|..+ ..+++|++|++++|++++..+.
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~-~~l~~L~~L~l~~n~l~~~~~~  167 (570)
T 2z63_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLEHLDLSSNKIQSIYCT  167 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGG-GGCTTCCEEECTTSCCCEECGG
T ss_pred             CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhh-cccCCCCEEeCcCCccceecHH
Confidence            99888999999999999999999987777679999999999999999986 357766 4489999999999998765443


Q ss_pred             CCCCCCCccccCCCC--CceEEcccCccccccccccccCCCCCCCccEEeCcCC--------------------------
Q 044353          162 FDSPSVPLITTPSLL--GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKN--------------------------  213 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~--~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n--------------------------  213 (596)
                      .+..      ++.++  ...+++++|.+.+..+..+..     .+|+.|++++|                          
T Consensus       168 ~~~~------l~~L~~~~~~L~l~~n~l~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~  236 (570)
T 2z63_A          168 DLRV------LHQMPLLNLSLDLSLNPMNFIQPGAFKE-----IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE  236 (570)
T ss_dssp             GGHH------HHTCTTCCCEEECTTCCCCEECTTTTTT-----CEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEE
T ss_pred             Hccc------hhccchhhhhcccCCCCceecCHHHhcc-----CcceeEecccccccccchhhhhcCccccceeeecccc
Confidence            2221      11111  156899999988765543322     25777776665                          


Q ss_pred             --------------------------------cCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          214 --------------------------------HFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       214 --------------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                                                      .+.+..+..+..+++|++|++++|.++ .+|..+..+ +|++|++++|
T Consensus       237 ~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n  314 (570)
T 2z63_A          237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNC  314 (570)
T ss_dssp             CCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESC
T ss_pred             ccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccC
Confidence                                            333445666777888999999999887 677778777 8999999999


Q ss_pred             cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcC--CcccCCCCCCcEEeCCCCcCccc
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF--PIQLCRLGSLQILDVAYNSLSGT  339 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~  339 (596)
                      .+.. .|.  ..+++|+.|++++|.+.+..+.   ..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+.
T Consensus       315 ~~~~-l~~--~~l~~L~~L~l~~n~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  388 (570)
T 2z63_A          315 KFGQ-FPT--LKLKSLKRLTFTSNKGGNAFSE---VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM  388 (570)
T ss_dssp             BCSS-CCB--CBCSSCCEEEEESCBSCCBCCC---CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE
T ss_pred             cccc-cCc--ccccccCEEeCcCCcccccccc---ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc
Confidence            8883 333  4678899999999988755554   36889999999999887543  56788889999999999998854


Q ss_pred             CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCC
Q 044353          340 IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ  419 (596)
Q Consensus       340 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  419 (596)
                       +..+..++.|+.++++.+......                   ....+..+++|++|++++|.+.+..|..|.++++|+
T Consensus       389 -~~~~~~l~~L~~L~l~~n~l~~~~-------------------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  448 (570)
T 2z63_A          389 -SSNFLGLEQLEHLDFQHSNLKQMS-------------------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE  448 (570)
T ss_dssp             -EEEEETCTTCCEEECTTSEEESCT-------------------TSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC
T ss_pred             -cccccccCCCCEEEccCCcccccc-------------------chhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCc
Confidence             444888999999888765321110                   012345688999999999999988999999999999


Q ss_pred             eeeccCccCc-ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCC
Q 044353          420 SLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGN  497 (596)
Q Consensus       420 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n  497 (596)
                      +|+|++|+++ +.+|..+..+++|++|++++|++++..|..+..+++|+.|++++|++++..+.. ..++.++.+++.+|
T Consensus       449 ~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N  528 (570)
T 2z63_A          449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTN  528 (570)
T ss_dssp             EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCC
Confidence            9999999997 578999999999999999999999988999999999999999999999887754 67888999999999


Q ss_pred             C-CCCCCC
Q 044353          498 D-LCGAPL  504 (596)
Q Consensus       498 ~-lc~~~~  504 (596)
                      + .|.++.
T Consensus       529 ~~~~~~~~  536 (570)
T 2z63_A          529 PWDCSCPR  536 (570)
T ss_dssp             CBCCCTTT
T ss_pred             cccCCCcc
Confidence            9 666553

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.2e-44  Score=397.52  Aligned_cols=429  Identities=18%  Similarity=0.237  Sum_probs=320.4

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEEC-cCCcccccCCccC--------------------------------------
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDL-SNNTVNGPIPLSL--------------------------------------   41 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~l-s~n~i~~~~~~~~--------------------------------------   41 (596)
                      .|+|++|++.|.+|++++++++|++|+| ++|.+++..|...                                      
T Consensus       327 ~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~  406 (876)
T 4ecn_A          327 GLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQD  406 (876)
T ss_dssp             EEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHH
T ss_pred             EEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHH
Confidence            3799999999999999999999999999 8888776522110                                      


Q ss_pred             -------------cCCCCCCEEECcC--CcCccccChhhhhcCCCCcEEEccCCeeee-----------------EeCCC
Q 044353           42 -------------GQIANLEYLDLSN--NKLNGTVSEIHFLNLTQLLVFRAHGNSLVF-----------------KINPN   89 (596)
Q Consensus        42 -------------~~l~~L~~L~Ls~--n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~~~   89 (596)
                                   .....++.+.+..  |++++ +|. .|.++++|++|+|++|.+++                 .+|..
T Consensus       407 ~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~-~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~  484 (876)
T 4ecn_A          407 AINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISK-AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE  484 (876)
T ss_dssp             HHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECG-GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred             HhhhCccccccccccccchhhceeccccCcccc-hhH-HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence                         1122334444433  77775 887 79999999999999999988                 37777


Q ss_pred             CC--CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCc-Ccc-cCChhHHh------cCCCCcEEEcccccccccC
Q 044353           90 WV--PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTR-ISA-KIPRGFWN------SIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        90 ~~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~-i~~-~~~~~~~~------~l~~L~~L~l~~n~l~~~~  159 (596)
                      +.  .+++|++|+|++|.+.+.+|..++++++|+.|++++|+ +++ .+|..+..      .+++|++|++++|+++ .+
T Consensus       485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~i  563 (876)
T 4ecn_A          485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EF  563 (876)
T ss_dssp             CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BC
T ss_pred             hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-cc
Confidence            77  99999999999999999999999999999999999998 887 78876643      2348999999999987 55


Q ss_pred             CC--CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCC-CcEEEcc
Q 044353          160 PK--FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPR-LRMLNLG  235 (596)
Q Consensus       160 ~~--~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~  235 (596)
                      |.  .+...         .. +.+++++|.+. .++     .++.+++|+.|++++|.+. .+|..+..+++ |+.|+++
T Consensus       564 p~~~~l~~L---------~~L~~L~Ls~N~l~-~lp-----~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          564 PASASLQKM---------VKLGLLDCVHNKVR-HLE-----AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             CCHHHHTTC---------TTCCEEECTTSCCC-BCC-----CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred             CChhhhhcC---------CCCCEEECCCCCcc-cch-----hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence            54  33322         22 67888888776 433     4556788888888888887 57777888887 8888888


Q ss_pred             cccccccCCccCcCCCC--CcEEEccCCcccccCChhh---c--CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353          236 NNNFTGSLPMSIGALNS--LMSLNLRNNRLSGIIPTSF---R--NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR  308 (596)
Q Consensus       236 ~n~l~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  308 (596)
                      +|.++ .+|..+..++.  |+.|++++|.+.+..|...   .  .+++|+.|++++|.+. .+|..++..+++|+.|+++
T Consensus       628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls  705 (876)
T 4ecn_A          628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILS  705 (876)
T ss_dssp             SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECC
T ss_pred             CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECC
Confidence            88887 67777766544  8888888888876554322   2  3457888888888887 7888777677888888888


Q ss_pred             CCcCcCcCCcccCC--------CCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353          309 SNKFHGDFPIQLCR--------LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT  380 (596)
Q Consensus       309 ~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~  380 (596)
                      +|.++ .+|..+..        +++|+.|++++|+++ .+|..+..                                  
T Consensus       706 ~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~----------------------------------  749 (876)
T 4ecn_A          706 NNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRA----------------------------------  749 (876)
T ss_dssp             SCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGST----------------------------------
T ss_pred             CCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhh----------------------------------
Confidence            88887 45543332        227888888888887 56655430                                  


Q ss_pred             ccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccC------ccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353          381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSH------NLFTGRIPDNIGVMRSIESLDFSANQLSG  454 (596)
Q Consensus       381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  454 (596)
                              ..+++|+.|+|++|.+++ +|..+..+++|+.|+|++      |++.+.+|..++.+++|+.|+|++|++ +
T Consensus       750 --------~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~  819 (876)
T 4ecn_A          750 --------TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-R  819 (876)
T ss_dssp             --------TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-C
T ss_pred             --------ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-C
Confidence                    124558889999999986 788888899999998876      778888898899999999999999999 4


Q ss_pred             cCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC
Q 044353          455 QIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND  498 (596)
Q Consensus       455 ~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~  498 (596)
                      .+|..+.  ++|+.||+++|++...-+.. ..........+.+|+
T Consensus       820 ~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~  862 (876)
T 4ecn_A          820 KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK  862 (876)
T ss_dssp             BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCT
T ss_pred             ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCC
Confidence            6776654  68999999999886543322 112223344555554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=4.6e-44  Score=384.45  Aligned_cols=443  Identities=17%  Similarity=0.163  Sum_probs=294.2

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..|..|+++++|++|++++|++++..|.+|..+++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus        30 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n  108 (549)
T 2z81_A           30 SLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGN  108 (549)
T ss_dssp             EEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEECTTC
T ss_pred             EEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEECCCC
Confidence            3788888888888888888889999999988888877788888888999999888887 455546888888888888888


Q ss_pred             eeeeE-eCCCCCCCCCccEEEccCCCCCCCc-chhhcCCCCCcEEEcccCcCcccCChhHHh------------------
Q 044353           81 SLVFK-INPNWVPPFQLAFLELRSCHLGPRF-PLWLQSQKKLYYLDISSTRISAKIPRGFWN------------------  140 (596)
Q Consensus        81 ~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~------------------  140 (596)
                      .++.. .+..+..+++|++|++++|.+.+.+ +..++++++|++|++++|.+++..|..+..                  
T Consensus       109 ~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~  188 (549)
T 2z81_A          109 PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLL  188 (549)
T ss_dssp             CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHH
T ss_pred             cccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccc
Confidence            88753 4567788888888888888743333 456788888888888888887666554422                  


Q ss_pred             -----cCCCCcEEEcccccccccCCC--CCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcC
Q 044353          141 -----SIFQYDYLNVSGNQIYGGVPK--FDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK  212 (596)
Q Consensus       141 -----~l~~L~~L~l~~n~l~~~~~~--~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~  212 (596)
                           .+++|++|++++|++++....  ....        .... +.+++++|.+.+..+..+...+..+++++.+++++
T Consensus       189 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~--------~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~  260 (549)
T 2z81_A          189 EIFADILSSVRYLELRDTNLARFQFSPLPVDE--------VSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD  260 (549)
T ss_dssp             HHHHHSTTTBSEEEEESCBCTTCCCCCCSSCC--------CCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEES
T ss_pred             hhhHhhcccccEEEccCCccccccccccchhh--------hhhcccceeccccccchhHHHHHHHHhhhhcccccccccc
Confidence                 234444444444444332100  0000        0111 45555555555544444444444556666666666


Q ss_pred             CcCCCCC------CcccCCCCCCcEEEccccccccc-----CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          213 NHFSEDI------PDCWMNWPRLRMLNLGNNNFTGS-----LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       213 n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      |.+.+..      ...+..+++|+.|++.++.+...     .+..+...++|+.|++++|.+..+....+..+++|++|+
T Consensus       261 ~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~  340 (549)
T 2z81_A          261 CTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLD  340 (549)
T ss_dssp             CEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEE
T ss_pred             ccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEE
Confidence            6554421      12234556666677666655421     111122345677777777777643333335677788888


Q ss_pred             ccCCcccccCchhh--hhhcccccEEEccCCcCcCcCC--cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          282 MGENELVGNIPTWI--GETFSRLMILNLRSNKFHGDFP--IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       282 L~~n~l~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      +++|.+.+.+|...  ...+++|++|++++|.+++..+  ..+..+++|++|++++|+++ .+|..+..+++|+.++++.
T Consensus       341 Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~  419 (549)
T 2z81_A          341 LSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS  419 (549)
T ss_dssp             CCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTT
T ss_pred             ccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCC
Confidence            88887765554321  2256778888888887764322  34677777888888888777 6777777777777777776


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  437 (596)
                      +.......                       ...++|+.|++++|.+++..    ..+++|++|+|++|+++ .+|. ..
T Consensus       420 N~l~~l~~-----------------------~~~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~  470 (549)
T 2z81_A          420 TGIRVVKT-----------------------CIPQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-AS  470 (549)
T ss_dssp             SCCSCCCT-----------------------TSCTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred             CCcccccc-----------------------hhcCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cc
Confidence            54321111                       11246788888888887532    46778888888888887 5665 45


Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353          438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       438 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      .+++|++|+|++|++++.+|..+..+++|+.|++++|++.|.||.
T Consensus       471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  515 (549)
T 2z81_A          471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  515 (549)
T ss_dssp             GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred             cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence            678888888888888877777788888888888888888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.7e-43  Score=384.51  Aligned_cols=426  Identities=18%  Similarity=0.242  Sum_probs=302.8

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCc------c------ccChh--------------------hh--
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLN------G------TVSEI--------------------HF--   66 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~------~------~~~~~--------------------~~--   66 (596)
                      .+++.|+|+++.+++.+|.+++++++|++|+|++|.+.      +      .+|..                    .+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~  160 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD  160 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence            58999999999999999999999999999999999751      1      01100                    00  


Q ss_pred             -----------------hcCCCCcEEEcc--CCeeeeEeCCCCCCCCCccEEEccCCCCCCC-----------------c
Q 044353           67 -----------------LNLTQLLVFRAH--GNSLVFKINPNWVPPFQLAFLELRSCHLGPR-----------------F  110 (596)
Q Consensus        67 -----------------~~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-----------------~  110 (596)
                                       .....++.+.+.  .|.+++ +|..+..+++|++|++++|++++.                 +
T Consensus       161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i  239 (636)
T 4eco_A          161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK  239 (636)
T ss_dssp             HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence                             001122222222  578888 888999999999999999999985                 8


Q ss_pred             chhhc--CCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc-ccc-cCCCCCCCCCCccccCCCCCceEEcccCc
Q 044353          111 PLWLQ--SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ-IYG-GVPKFDSPSVPLITTPSLLGSIFDLSNNA  186 (596)
Q Consensus       111 ~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~~~~~~l~ls~n~  186 (596)
                      |..++  ++++|++|++++|.+.+.+|..+. .+++|++|++++|+ +++ ..|..+....                   
T Consensus       240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-------------------  299 (636)
T 4eco_A          240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALA-------------------  299 (636)
T ss_dssp             TSCCCGGGCTTCCEEEEECCTTCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHH-------------------
T ss_pred             chhhhhcccCCCCEEEecCCcCCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhh-------------------
Confidence            88988  999999999999999999998775 48999999999998 876 5553322100                   


Q ss_pred             cccccccccccCCCCCCCccEEeCcCCcCCCCCCc--ccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccc
Q 044353          187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPD--CWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS  264 (596)
Q Consensus       187 l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  264 (596)
                                 .+..+++|++|++++|.++ .+|.  .+..+++|++|++++|.+++.+| .+..+++|++|++++|.+.
T Consensus       300 -----------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~  366 (636)
T 4eco_A          300 -----------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT  366 (636)
T ss_dssp             -----------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE
T ss_pred             -----------ccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc
Confidence                       0011356666666666666 4555  56666666666666666665666 6666666666666666666


Q ss_pred             ccCChhhcCCCC-CCEEEccCCcccccCchhhhh-hcccccEEEccCCcCcCcCCcccC-------CCCCCcEEeCCCCc
Q 044353          265 GIIPTSFRNLSI-LKALDMGENELVGNIPTWIGE-TFSRLMILNLRSNKFHGDFPIQLC-------RLGSLQILDVAYNS  335 (596)
Q Consensus       265 ~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~l~~n~  335 (596)
                       ..|..+..+++ |++|++++|.++ .+|..+.. .+++|++|++++|.+++..|..+.       .+++|++|++++|.
T Consensus       367 -~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~  444 (636)
T 4eco_A          367 -EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ  444 (636)
T ss_dssp             -ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC
T ss_pred             -cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc
Confidence             45555666666 666666666665 56654431 123566666666666666665555       55566666666666


Q ss_pred             CcccCCcc-ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc-
Q 044353          336 LSGTIPRC-INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT-  413 (596)
Q Consensus       336 l~~~~~~~-~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-  413 (596)
                      ++ .+|.. +..++.|+.++++.+...........             ........+++|+.|++++|.++ .+|..+. 
T Consensus       445 l~-~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~-------------~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~  509 (636)
T 4eco_A          445 IS-KFPKELFSTGSPLSSINLMGNMLTEIPKNSLK-------------DENENFKNTYLLTSIDLRFNKLT-KLSDDFRA  509 (636)
T ss_dssp             CC-SCCTHHHHTTCCCSEEECCSSCCSBCCSSSSE-------------ETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred             cC-cCCHHHHccCCCCCEEECCCCCCCCcCHHHhc-------------cccccccccCCccEEECcCCcCC-ccChhhhh
Confidence            66 34433 33466666666665543311111000             00000123458999999999999 7888886 


Q ss_pred             -CcccCCeeeccCccCcccCCccccCCCCCCEEEC------CCCcCcccCCccccCCCCCCEEecccccCccCCCCCCcc
Q 044353          414 -NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDF------SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQL  486 (596)
Q Consensus       414 -~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L------s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~  486 (596)
                       .+++|++|+|++|++++ +|..+..+++|+.|+|      ++|++.+.+|..+..+++|+.|++++|++ +.+|.. ..
T Consensus       510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~  586 (636)
T 4eco_A          510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT  586 (636)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC
T ss_pred             ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh
Confidence             99999999999999996 8999999999999999      56888889999999999999999999999 677765 33


Q ss_pred             CccccccccCCC-CC
Q 044353          487 QSFGASSFAGND-LC  500 (596)
Q Consensus       487 ~~l~~~~~~~n~-lc  500 (596)
                      +.++.+++++|+ .|
T Consensus       587 ~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          587 PNISVLDIKDNPNIS  601 (636)
T ss_dssp             TTCCEEECCSCTTCE
T ss_pred             CcCCEEECcCCCCcc
Confidence            789999999998 45

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=3e-43  Score=378.13  Aligned_cols=454  Identities=17%  Similarity=0.186  Sum_probs=339.2

Q ss_pred             eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353            3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL   82 (596)
Q Consensus         3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l   82 (596)
                      |.++++++ .+|..+.  ++|++|++++|.+++..|.+|.++++|++|++++|+++ .++...|.++++|++|++++|.+
T Consensus        11 ~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l   86 (549)
T 2z81_A           11 DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL   86 (549)
T ss_dssp             ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCC
T ss_pred             ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccChhhccccccCCEEECCCCcc
Confidence            66788888 5666554  89999999999999888999999999999999999998 45444899999999999999999


Q ss_pred             eeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           83 VFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      .+..+..|..+++|++|++++|.+.+ ..+..++++++|++|++++|.+.+.++...+..+++|++|++++|++++..+.
T Consensus        87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  166 (549)
T 2z81_A           87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ  166 (549)
T ss_dssp             CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred             CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence            88777779999999999999999986 35678999999999999999855567655556689999999999999987777


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCC--C-cccCCCCCCcEEEccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDI--P-DCWMNWPRLRMLNLGNNN  238 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~-~~~~~l~~L~~L~l~~n~  238 (596)
                      .+......        +.++++.|.+... +..+   ++.+++|+.|++++|.+.+..  + .....+++|+.|++++|.
T Consensus       167 ~l~~l~~L--------~~L~l~~n~~~~~-~~~~---~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~  234 (549)
T 2z81_A          167 SLKSIRDI--------HHLTLHLSESAFL-LEIF---ADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV  234 (549)
T ss_dssp             TTTTCSEE--------EEEEEECSBSTTH-HHHH---HHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCE
T ss_pred             hhhccccC--------ceEecccCccccc-chhh---HhhcccccEEEccCCccccccccccchhhhhhcccceeccccc
Confidence            66543221        5566666554321 1111   112456666666666665431  1 112234455555555554


Q ss_pred             ccccCC----------------------------------ccCcCCCCCcEEEccCCccccc-----CChhhcCCCCCCE
Q 044353          239 FTGSLP----------------------------------MSIGALNSLMSLNLRNNRLSGI-----IPTSFRNLSILKA  279 (596)
Q Consensus       239 l~~~~~----------------------------------~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~  279 (596)
                      +++..+                                  ..+..+++|+.|++.++.+...     .+..+...++|+.
T Consensus       235 l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~  314 (549)
T 2z81_A          235 LTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKR  314 (549)
T ss_dssp             EEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCE
T ss_pred             cchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceE
Confidence            442111                                  1233445555555555544321     1222344578999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCCCCcCcccCC--ccccccccCcccC
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVAYNSLSGTIP--RCINNFSAMATTD  354 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~l~  354 (596)
                      |++++|.+. .+|..++..+++|++|++++|.+++..|   ..+..+++|++|++++|++++..+  ..+..+++|+.++
T Consensus       315 L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~  393 (549)
T 2z81_A          315 ITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLD  393 (549)
T ss_dssp             EEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEE
T ss_pred             EEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEE
Confidence            999999987 8998887679999999999999987654   346788999999999999985432  4588899999999


Q ss_pred             CCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCc
Q 044353          355 SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD  434 (596)
Q Consensus       355 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~  434 (596)
                      ++.+.....                     +.....+++|+.|++++|.++ .+|..+  .++|++|+|++|++++.+  
T Consensus       394 Ls~N~l~~l---------------------p~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~--  447 (549)
T 2z81_A          394 ISRNTFHPM---------------------PDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS--  447 (549)
T ss_dssp             CTTCCCCCC---------------------CSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC--
T ss_pred             CCCCCCccC---------------------ChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc--
Confidence            988754321                     112344788999999999997 444443  268999999999998643  


Q ss_pred             cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-CccCccccccccCCC-CCCCC
Q 044353          435 NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       435 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~~~l~~~~~~~n~-lc~~~  503 (596)
                        +.+++|++|++++|+++ .+|. ...+++|+.|++++|++++..|.. ..++.++.+++++|+ .|.++
T Consensus       448 --~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          448 --LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             --CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             --ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence              57899999999999999 5565 467899999999999999887764 678889999999999 67655

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=3e-43  Score=375.38  Aligned_cols=454  Identities=17%  Similarity=0.167  Sum_probs=302.3

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +||+++|+++ .+|..+.  ++|++|++++|.+++..|.+|.++++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus         4 ~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            4 LVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS-VFKFNQELEYLDLSHN   79 (520)
T ss_dssp             EEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGG-GGTTCTTCCEEECCSS
T ss_pred             eEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChH-HhhcccCCCEEecCCC
Confidence            4899999999 5777666  9999999999999988888999999999999999999854454 8999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC--cEEEcccccc--
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY--DYLNVSGNQI--  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~l--  155 (596)
                      .++... ..  .+++|++|++++|.+.+ ..|..++++++|++|++++|.+++.   . +..+++|  ++|++++|.+  
T Consensus        80 ~l~~lp-~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~---~-~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLVKIS-CH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKS---S-VLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCCEEE-CC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGG---G-GGGGTTSCEEEEEEEECTTTT
T ss_pred             ceeecC-cc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccchh---h-ccccccceeeEEEeecccccc
Confidence            998544 33  89999999999999987 4678999999999999999999752   2 3446788  9999999998  


Q ss_pred             cccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCc-------CCCCCCcccCCCCC
Q 044353          156 YGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNH-------FSEDIPDCWMNWPR  228 (596)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~~~~l~~  228 (596)
                      .+..+..+.....       ....+++++|.+.+..+.   ..+..+++|+.|++++|.       +.+.++ .+..+++
T Consensus       153 ~~~~~~~l~~l~~-------~~l~l~l~~n~~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~  221 (520)
T 2z7x_B          153 EKEDPEGLQDFNT-------ESLHIVFPTNKEFHFILD---VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPK  221 (520)
T ss_dssp             SSCCTTTTTTCCE-------EEEEEECCSSSCCCCCCC---CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTT
T ss_pred             ccccccccccccc-------ceEEEEeccCcchhhhhh---hhhhcccceeeccccccccccccceeecchh-hhccccc
Confidence            6655555443210       013456666666654332   233446777777777775       444343 4666677


Q ss_pred             CcEEEcccccccccCCccCc---CCCCCcEEEccCCcccccCChhh-----cCCCCCCEEEccCCcccccCc-hhhhhhc
Q 044353          229 LRMLNLGNNNFTGSLPMSIG---ALNSLMSLNLRNNRLSGIIPTSF-----RNLSILKALDMGENELVGNIP-TWIGETF  299 (596)
Q Consensus       229 L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~-~~~~~~l  299 (596)
                      |+.|++++|.+++..+..+.   ..++|++|++++|.+.+..|..+     ..+++|+.+++++|.+  .+| .+++ .+
T Consensus       222 L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~-~~  298 (520)
T 2z7x_B          222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY-EI  298 (520)
T ss_dssp             CCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH-HH
T ss_pred             hhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh-cc
Confidence            77777776665532211111   13466777777777666666655     6666667777776666  455 3333 22


Q ss_pred             ---ccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353          300 ---SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA  376 (596)
Q Consensus       300 ---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  376 (596)
                         .+|+.|++++|.+....  ....+++|++|++++|.+++.+|..+..++.|+.++++.+......            
T Consensus       299 ~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~------------  364 (520)
T 2z7x_B          299 FSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELS------------  364 (520)
T ss_dssp             HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHH------------
T ss_pred             cccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccc------------
Confidence               44666666666654321  1245666666666666666666666666666666666655432100            


Q ss_pred             EEEeccceeecccccccccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353          377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  455 (596)
Q Consensus       377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  455 (596)
                            ..+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++..|..+.  ++|+.|++++|+++ .
T Consensus       365 ------~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~  435 (520)
T 2z7x_B          365 ------KIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-S  435 (520)
T ss_dssp             ------HHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-C
T ss_pred             ------cchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-c
Confidence                  0111223456667777777777653443 366666777777777766655555443  56777777777766 5


Q ss_pred             CCccccCCCCCCEEecccccCccCCCC-CCccCccccccccCCC-CCCC
Q 044353          456 IPQSMSNLSFLNYLNLSNNNLNGEIPS-STQLQSFGASSFAGND-LCGA  502 (596)
Q Consensus       456 ~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~l~~~~~~~n~-lc~~  502 (596)
                      +|..+..+++|+.|++++|+++...+. ...++.++.+++++|+ .|.+
T Consensus       436 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          436 IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             cchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccC
Confidence            555555667777777777766643332 2445566666666666 4443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=2.9e-41  Score=369.40  Aligned_cols=449  Identities=21%  Similarity=0.185  Sum_probs=345.5

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|||++|+|++..+.+|.++++|++|+|++|.|+++.+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus        56 ~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L~Ls~N  134 (635)
T 4g8a_A           56 NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVET  134 (635)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEEECTTS
T ss_pred             EEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEEECCCC
Confidence            4899999999888889999999999999999999888889999999999999999998 777768999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCC-CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCC----CcEEEcccccc
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGP-RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQ----YDYLNVSGNQI  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l~~n~l  155 (596)
                      .++...+..|..+++|++|++++|.+.+ ..|..++.+++|++|++++|++++..+..+. .+.+    ...++++.|.+
T Consensus       135 ~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~-~L~~l~~~~~~~~ls~n~l  213 (635)
T 4g8a_A          135 NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLR-VLHQMPLLNLSLDLSLNPM  213 (635)
T ss_dssp             CCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGH-HHHTCTTCCCEEECTTCCC
T ss_pred             cCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccccc-chhhhhhhhhhhhcccCcc
Confidence            9988777789999999999999999876 4577888999999999999999866555442 2322    34677777776


Q ss_pred             cccCCCCCCCCCC-ccc--------------cCCCCC-------------------------------------------
Q 044353          156 YGGVPKFDSPSVP-LIT--------------TPSLLG-------------------------------------------  177 (596)
Q Consensus       156 ~~~~~~~~~~~~~-~~~--------------~~~~~~-------------------------------------------  177 (596)
                      ....+..+..... .+.              +..+..                                           
T Consensus       214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~  293 (635)
T 4g8a_A          214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY  293 (635)
T ss_dssp             CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred             cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence            5543332221100 000              000000                                           


Q ss_pred             ---------------ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc
Q 044353          178 ---------------SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS  242 (596)
Q Consensus       178 ---------------~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  242 (596)
                                     ..+++..+.+..      ...+.....++.|++.+|.+.+..+.   .++.|+.+++.+|.....
T Consensus       294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~L~~l~l~~n~~~~~  364 (635)
T 4g8a_A          294 YLDGIIDLFNCLTNVSSFSLVSVTIER------VKDFSYNFGWQHLELVNCKFGQFPTL---KLKSLKRLTFTSNKGGNA  364 (635)
T ss_dssp             CEEECTTTTGGGTTCSEEEEESCEEEE------CGGGGSCCCCSEEEEESCEESSCCCC---BCTTCCEEEEESCCSCCB
T ss_pred             cccchhhhhhhhccccccccccccccc------ccccccchhhhhhhcccccccCcCcc---cchhhhhcccccccCCCC
Confidence                           111111111111      11233456899999999988765443   467789999999887643


Q ss_pred             CCccCcCCCCCcEEEccCCcccc--cCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcC-Ccc
Q 044353          243 LPMSIGALNSLMSLNLRNNRLSG--IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDF-PIQ  319 (596)
Q Consensus       243 ~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~  319 (596)
                        .....+++|+.|++++|.+..  ..+..+..+.+|+.+++..+... ..+..+. .+++|+.+++..+...... +..
T Consensus       365 --~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~  440 (635)
T 4g8a_A          365 --FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSV  440 (635)
T ss_dssp             --CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCT-TCTTCCEEECTTSEEESTTSSCT
T ss_pred             --cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-ccccccc-ccccccchhhhhccccccccccc
Confidence              234578999999999998863  45667778899999999999886 4444444 6899999999988766443 346


Q ss_pred             cCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEc
Q 044353          320 LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI  399 (596)
Q Consensus       320 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  399 (596)
                      +..+++++.++++.|.+.+..+..+..++.++.++++.+...                   ....+..+..+++|++|+|
T Consensus       441 ~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~-------------------~~~~~~~~~~l~~L~~L~L  501 (635)
T 4g8a_A          441 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ-------------------ENFLPDIFTELRNLTFLDL  501 (635)
T ss_dssp             TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-------------------GGEECSCCTTCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccccchhhhhhhhhhcccc-------------------cccCchhhhhccccCEEEC
Confidence            788999999999999999888888888888888888765321                   1122334556788999999


Q ss_pred             cCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCcc
Q 044353          400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNG  478 (596)
Q Consensus       400 s~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~  478 (596)
                      ++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|+.+..+ ++|++|++++|++.|
T Consensus       502 s~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             CCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            9999998888899999999999999999998888889999999999999999998888888888 579999999999999


Q ss_pred             CCCCC
Q 044353          479 EIPSS  483 (596)
Q Consensus       479 ~~~~~  483 (596)
                      .|...
T Consensus       582 ~C~~~  586 (635)
T 4g8a_A          582 TCEHQ  586 (635)
T ss_dssp             SGGGH
T ss_pred             cCCcH
Confidence            88754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=1.2e-41  Score=356.92  Aligned_cols=389  Identities=17%  Similarity=0.169  Sum_probs=304.3

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      ++.++++++ .+|. +  .++|++|++++|.+++..|.+|.++++|++|++++|.+.+.++...|.++++|++|++++|.
T Consensus        15 ~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~   90 (455)
T 3v47_A           15 AICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ   90 (455)
T ss_dssp             EECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred             cCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence            455666666 3454 2  37899999999999988899999999999999999998777876689999999999999999


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchh--hcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLW--LQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGV  159 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~  159 (596)
                      ++...+..|..+++|++|++++|.+.+..+..  ++.+++|++|++++|.+++..|..++..+++|++|++++|++++..
T Consensus        91 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A           91 FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             TCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             cCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            99888899999999999999999998755555  8899999999999999987778776677889999999999886554


Q ss_pred             CCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc--------CCCCCCcE
Q 044353          160 PKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW--------MNWPRLRM  231 (596)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~--------~~l~~L~~  231 (596)
                      +..+...                                  ...+++.|++++|.+.+..+..+        ..+++|++
T Consensus       171 ~~~l~~l----------------------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~  216 (455)
T 3v47_A          171 EEDLLNF----------------------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITT  216 (455)
T ss_dssp             TTTSGGG----------------------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEE
T ss_pred             hhhhhcc----------------------------------ccccccccccccCcccccchhhccccccccccccceeee
Confidence            4332210                                  02477888888888776544332        24456777


Q ss_pred             EEcccccccccCCccCcCC---CCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh-hhcccccEEEc
Q 044353          232 LNLGNNNFTGSLPMSIGAL---NSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG-ETFSRLMILNL  307 (596)
Q Consensus       232 L~l~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~~l~~L~~L~L  307 (596)
                      |++++|.+++..|..+...   ++|+.|++++|...+...              ..+.+.+..+..+. -..++|++|++
T Consensus       217 L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l  282 (455)
T 3v47_A          217 LDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDL  282 (455)
T ss_dssp             EECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEEC
T ss_pred             EecCCCcccccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEe
Confidence            7777776665555544332   566666666665543211              01111111111111 02468999999


Q ss_pred             cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353          308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY  387 (596)
Q Consensus       308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (596)
                      ++|.+.+..|..+..+++|++|++++|.+++..|..+..                                         
T Consensus       283 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-----------------------------------------  321 (455)
T 3v47_A          283 SKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-----------------------------------------  321 (455)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-----------------------------------------
T ss_pred             cCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-----------------------------------------
Confidence            999999888889999999999999999998777766655                                         


Q ss_pred             ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 044353          388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN  467 (596)
Q Consensus       388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  467 (596)
                         +++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|++|++++|++++..+..+..+++|+
T Consensus       322 ---l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  398 (455)
T 3v47_A          322 ---LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQ  398 (455)
T ss_dssp             ---CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ---cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCccc
Confidence               44488999999999988889999999999999999999988899999999999999999999987778889999999


Q ss_pred             EEecccccCccCCCCCCcc
Q 044353          468 YLNLSNNNLNGEIPSSTQL  486 (596)
Q Consensus       468 ~L~ls~N~l~~~~~~~~~~  486 (596)
                      .|++++|+++|.||....+
T Consensus       399 ~L~l~~N~l~~~~~~~~~l  417 (455)
T 3v47_A          399 KIWLHTNPWDCSCPRIDYL  417 (455)
T ss_dssp             EEECCSSCBCCCTTTTHHH
T ss_pred             EEEccCCCcccCCCcchHH
Confidence            9999999999999976443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=3.9e-42  Score=379.67  Aligned_cols=426  Identities=16%  Similarity=0.186  Sum_probs=287.1

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEEC-cCCcCccccChhhh---------------------------------
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDL-SNNKLNGTVSEIHF---------------------------------   66 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~L-s~n~i~~~~~~~~~---------------------------------   66 (596)
                      ..++.|+|++|.+++.+|.+++++++|++|+| ++|.+.|..+....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            57999999999999999999999999999999 88877655221100                                 


Q ss_pred             -----------------hcCCCCcEEEccC--CeeeeEeCCCCCCCCCccEEEccCCCCCC-----------------Cc
Q 044353           67 -----------------LNLTQLLVFRAHG--NSLVFKINPNWVPPFQLAFLELRSCHLGP-----------------RF  110 (596)
Q Consensus        67 -----------------~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~  110 (596)
                                       .....++.+.+..  |.+++ +|..+..+++|+.|+|++|++++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             1122344444443  78888 78899999999999999999998                 37


Q ss_pred             chhhc--CCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccc-ccc-cCCCCCCCCCCccccCCCCC-ceEEcccC
Q 044353          111 PLWLQ--SQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQ-IYG-GVPKFDSPSVPLITTPSLLG-SIFDLSNN  185 (596)
Q Consensus       111 ~~~l~--~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~-~~~~~~~~~~~~~~~~~~~~-~~l~ls~n  185 (596)
                      |..++  ++++|+.|++++|.+.+.+|..+. .+++|+.|++++|+ +++ .+|..+.....  ....++. +.+++++|
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~--~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLAD--DEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHH--CTTTTTTCCEEECCSS
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhh--cccccCCccEEEeeCC
Confidence            88877  999999999999999999997764 48999999999998 876 55532221100  0001111 45555555


Q ss_pred             ccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCC-CcEEEccCCccc
Q 044353          186 ALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS-LMSLNLRNNRLS  264 (596)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~L~~n~l~  264 (596)
                      .+. .++..  ..++.+++|+.|++++|.+. .+| .|..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.+.
T Consensus       559 ~L~-~ip~~--~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~  632 (876)
T 4ecn_A          559 NLE-EFPAS--ASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK  632 (876)
T ss_dssp             CCC-BCCCH--HHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC
T ss_pred             cCC-ccCCh--hhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC
Confidence            554 32220  02233555555555555555 344 4555555555555555555 45555555555 555555555555


Q ss_pred             ccCChhhcCCCC--CCEEEccCCcccccCchhh---h-hhcccccEEEccCCcCcCcCCcc-cCCCCCCcEEeCCCCcCc
Q 044353          265 GIIPTSFRNLSI--LKALDMGENELVGNIPTWI---G-ETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       265 ~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~---~-~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~  337 (596)
                       ..|..+..++.  |+.|++++|.+.+.+|...   . ..+++|+.|++++|.++ .+|.. +..+++|+.|++++|.++
T Consensus       633 -~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~  710 (876)
T 4ecn_A          633 -YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT  710 (876)
T ss_dssp             -SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS
T ss_pred             -cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC
Confidence             34444444332  5555555555554333211   0 01235555555555555 23332 234555555555555555


Q ss_pred             ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc--Cc
Q 044353          338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT--NL  415 (596)
Q Consensus       338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~--~l  415 (596)
                       .+|..+.....                                    .....+++|+.|+|++|.++ .+|..+.  .+
T Consensus       711 -~ip~~~~~~~~------------------------------------~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l  752 (876)
T 4ecn_A          711 -SIPENSLKPKD------------------------------------GNYKNTYLLTTIDLRFNKLT-SLSDDFRATTL  752 (876)
T ss_dssp             -CCCTTSSSCTT------------------------------------SCCTTGGGCCEEECCSSCCC-CCCGGGSTTTC
T ss_pred             -ccChHHhcccc------------------------------------ccccccCCccEEECCCCCCc-cchHHhhhccC
Confidence             33332211000                                    00122558999999999999 7888887  99


Q ss_pred             ccCCeeeccCccCcccCCccccCCCCCCEEECCC------CcCcccCCccccCCCCCCEEecccccCccCCCCCCccCcc
Q 044353          416 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSA------NQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSF  489 (596)
Q Consensus       416 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~------N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l  489 (596)
                      ++|+.|+|++|++++ +|..++.+++|+.|+|++      |++.+.+|..+..+++|+.|++++|++ +.+|.. ..+.+
T Consensus       753 ~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~-l~~~L  829 (876)
T 4ecn_A          753 PYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEK-LTPQL  829 (876)
T ss_dssp             TTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCSSS
T ss_pred             CCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHh-hcCCC
Confidence            999999999999996 788999999999999976      888889999999999999999999999 677776 33688


Q ss_pred             ccccccCCCC
Q 044353          490 GASSFAGNDL  499 (596)
Q Consensus       490 ~~~~~~~n~l  499 (596)
                      +.+++++|++
T Consensus       830 ~~LdLs~N~l  839 (876)
T 4ecn_A          830 YILDIADNPN  839 (876)
T ss_dssp             CEEECCSCTT
T ss_pred             CEEECCCCCC
Confidence            9999999974

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=2.2e-43  Score=376.38  Aligned_cols=436  Identities=17%  Similarity=0.150  Sum_probs=341.8

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|+|++|++++..|..|+++++|++|++++|.+++..|.+|.++++|++|+|++|+++ .+|..   .+++|++|++++|
T Consensus        25 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~---~l~~L~~L~L~~N  100 (520)
T 2z7x_B           25 ILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH---PTVNLKHLDLSFN  100 (520)
T ss_dssp             EEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC---CCCCCSEEECCSS
T ss_pred             EEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc---ccCCccEEeccCC
Confidence            4899999999988899999999999999999999888999999999999999999998 78763   8999999999999


Q ss_pred             eeee-EeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCC--cEEEcccCcC--cccCChhHHhcCC-CCcEEEccccc
Q 044353           81 SLVF-KINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL--YYLDISSTRI--SAKIPRGFWNSIF-QYDYLNVSGNQ  154 (596)
Q Consensus        81 ~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L--~~L~l~~n~i--~~~~~~~~~~~l~-~L~~L~l~~n~  154 (596)
                      .+++ ..+..|..+++|++|++++|.+.+   ..+..+++|  +.|++++|.+  .+..|..+.. +. ....+++++|+
T Consensus       101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~-l~~~~l~l~l~~n~  176 (520)
T 2z7x_B          101 AFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQD-FNTESLHIVFPTNK  176 (520)
T ss_dssp             CCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTT-CCEEEEEEECCSSS
T ss_pred             ccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccc-cccceEEEEeccCc
Confidence            9987 456789999999999999999975   456777788  9999999999  6667765533 22 23356778888


Q ss_pred             ccccCCCCCCCCCCccccCCCCC-ceEEcccCc-------cccccccccccCCCCCCCccEEeCcCCcCCCCCCccc---
Q 044353          155 IYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNA-------LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW---  223 (596)
Q Consensus       155 l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~-------l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---  223 (596)
                      +.+..+......        +.. +.+++++|.       +.+.++     .++.+++|+.|++++|.+.+..+..+   
T Consensus       177 ~~~~~~~~~~~~--------l~~L~~L~l~~n~~~~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~l~~~~~~~~~~~  243 (520)
T 2z7x_B          177 EFHFILDVSVKT--------VANLELSNIKCVLEDNKCSYFLSILA-----KLQTNPKLSNLTLNNIETTWNSFIRILQL  243 (520)
T ss_dssp             CCCCCCCCCCTT--------CSEEEECCEEECCSTTTTHHHHHHHH-----GGGGCTTCCEEEEEEEEEEHHHHHHHHHH
T ss_pred             chhhhhhhhhhc--------ccceeeccccccccccccceeecchh-----hhccccchhhccccccccCHHHHHHHHHH
Confidence            776555443322        222 667777775       444332     34457888899988887764322111   


Q ss_pred             CCCCCCcEEEcccccccccCCccC-----cCCCCCcEEEccCCcccccCChhhcCC---CCCCEEEccCCcccccCchhh
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSI-----GALNSLMSLNLRNNRLSGIIPTSFRNL---SILKALDMGENELVGNIPTWI  295 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~l~~~~~~~~  295 (596)
                      ...++|++|++++|.+++.+|..+     ..++.|+.+++++|.+ ......+..+   .+|+.|++++|.+. ..+.  
T Consensus       244 ~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~-~~~~--  319 (520)
T 2z7x_B          244 VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMV-HMLC--  319 (520)
T ss_dssp             HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCC-CCCC--
T ss_pred             hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccc-cccc--
Confidence            123588899999998888888887     7888888999988888 2332444444   67888999888876 3321  


Q ss_pred             hhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc--cCCccccccccCcccCCCCCCCCccccCCCCCcee
Q 044353          296 GETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG--TIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIV  373 (596)
Q Consensus       296 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~  373 (596)
                      ...+++|++|++++|.+++..|..+..+++|++|++++|++++  .+|..+..++.|+.++++.+......+        
T Consensus       320 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~--------  391 (520)
T 2z7x_B          320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK--------  391 (520)
T ss_dssp             CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGG--------
T ss_pred             hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccc--------
Confidence            1257888899999998887788888888899999999998886  556778888888888888765432111        


Q ss_pred             eeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          374 EDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       374 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                                 ...+..+++|+.|++++|.+++..|..+.  ++|+.|+|++|+++ .+|..+..+++|++|++++|+++
T Consensus       392 -----------~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~  457 (520)
T 2z7x_B          392 -----------KGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK  457 (520)
T ss_dssp             -----------GCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             -----------cchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC
Confidence                       11234478899999999999888777664  79999999999999 78888889999999999999999


Q ss_pred             ccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          454 GQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       454 ~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      ...+..+..+++|+.|++++|+++|.|+..
T Consensus       458 ~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~  487 (520)
T 2z7x_B          458 SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  487 (520)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             ccCHHHhccCCcccEEECcCCCCcccCCch
Confidence            554455999999999999999999988743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1.1e-39  Score=356.90  Aligned_cols=460  Identities=19%  Similarity=0.139  Sum_probs=341.7

Q ss_pred             cCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCC
Q 044353           12 HLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWV   91 (596)
Q Consensus        12 ~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~   91 (596)
                      .+|..+.  +++++|||++|+|+.+.+.+|.++++|++|+|++|+|+ .++..+|.++++|++|+|++|.++...+..|.
T Consensus        45 ~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~  121 (635)
T 4g8a_A           45 KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFS  121 (635)
T ss_dssp             SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred             ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence            3554442  47999999999999888889999999999999999998 77777999999999999999999988888999


Q ss_pred             CCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCC----
Q 044353           92 PPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSV----  167 (596)
Q Consensus        92 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~----  167 (596)
                      ++++|++|++++|++++..+..|+++++|++|++++|.+++......+..+++|++|++++|++++..+..+....    
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence            9999999999999999888888999999999999999997543334456689999999999999876554321100    


Q ss_pred             --Ccc--------ccCC--CCC---ceEEcccCcccccccccc-------------------------------------
Q 044353          168 --PLI--------TTPS--LLG---SIFDLSNNALSGSIFHLI-------------------------------------  195 (596)
Q Consensus       168 --~~~--------~~~~--~~~---~~l~ls~n~l~~~~~~~~-------------------------------------  195 (596)
                        ...        .++.  +..   ..+++..|..........                                     
T Consensus       202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence              000        0110  111   345555543321111000                                     


Q ss_pred             -----------------ccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEc
Q 044353          196 -----------------CQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL  258 (596)
Q Consensus       196 -----------------~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  258 (596)
                                       ...+....+++.+.+..+.+....  .+.....++.|++.+|.+....+   ..+..|+.+++
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~~l~l  356 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPT---LKLKSLKRLTF  356 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCC---CBCTTCCEEEE
T ss_pred             hhhhhhhhhhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcCc---ccchhhhhccc
Confidence                             001111223344444444333211  23344566666666666653322   23456677777


Q ss_pred             cCCcccccCChhhcCCCCCCEEEccCCcccc--cCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcC
Q 044353          259 RNNRLSGIIPTSFRNLSILKALDMGENELVG--NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL  336 (596)
Q Consensus       259 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  336 (596)
                      ..|.+...  .....+++|+.+++++|.+..  ..+.... .+.+|+++++..+... ..+..+..+++|+.+++..++.
T Consensus       357 ~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~-~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~  432 (635)
T 4g8a_A          357 TSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDF-GTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNL  432 (635)
T ss_dssp             ESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHH-SCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEE
T ss_pred             ccccCCCC--cccccccccccchhhccccccccccccchh-hhhhhhhhhccccccc-cccccccccccccchhhhhccc
Confidence            77766533  234578999999999998752  3444544 6889999999999887 4556788899999999999887


Q ss_pred             cccCC-ccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc-cccCCccccC
Q 044353          337 SGTIP-RCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF-SGEIPVEVTN  414 (596)
Q Consensus       337 ~~~~~-~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l-~~~~~~~~~~  414 (596)
                      ....+ ..+..+..+..++++.+.....                    .......++.++.|++++|.+ .+..|..|..
T Consensus       433 ~~~~~~~~~~~l~~l~~l~ls~n~l~~~--------------------~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~  492 (635)
T 4g8a_A          433 KQMSEFSVFLSLRNLIYLDISHTHTRVA--------------------FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE  492 (635)
T ss_dssp             ESTTSSCTTTTCTTCCEEECTTSCCEEC--------------------CTTTTTTCTTCCEEECTTCEEGGGEECSCCTT
T ss_pred             cccccccccccccccccccccccccccc--------------------cccccccchhhhhhhhhhcccccccCchhhhh
Confidence            65544 5677888888888876543222                    122345578899999999985 4467889999


Q ss_pred             cccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-Ccc-Cccccc
Q 044353          415 LQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFGAS  492 (596)
Q Consensus       415 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~-~~l~~~  492 (596)
                      +++|+.|+|++|++++..|..|+++++|++|+|++|++++..|..|..+++|++|++++|++++..|.. ..+ ..++.+
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L  572 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL  572 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEE
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEE
Confidence            999999999999999999999999999999999999999999999999999999999999999988875 334 578999


Q ss_pred             cccCCC-CCCCC
Q 044353          493 SFAGND-LCGAP  503 (596)
Q Consensus       493 ~~~~n~-lc~~~  503 (596)
                      ++++|| .|+|.
T Consensus       573 ~L~~Np~~C~C~  584 (635)
T 4g8a_A          573 NLTQNDFACTCE  584 (635)
T ss_dssp             ECTTCCBCCSGG
T ss_pred             EeeCCCCcccCC
Confidence            999999 78765

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=3e-40  Score=355.16  Aligned_cols=446  Identities=17%  Similarity=0.154  Sum_probs=300.7

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      ++|+++|++++ +|..+.  ++|++|++++|.+++..+.+|.++++|++|+|++|+++ .++...|.++++|++|++++|
T Consensus        35 ~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N  110 (562)
T 3a79_B           35 MVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHN  110 (562)
T ss_dssp             EEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTTS
T ss_pred             EEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCCC
Confidence            37999999996 776654  89999999999999888889999999999999999998 554448999999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCC-cchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCC--cEEEcccccc--
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPR-FPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQY--DYLNVSGNQI--  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L--~~L~l~~n~l--  155 (596)
                      .++. ++..  .+++|++|++++|++.+. .|..++++++|++|++++|.+++..    +..+++|  ++|++++|++  
T Consensus       111 ~l~~-lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~----~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          111 RLQN-ISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD----LLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             CCCE-ECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT----TGGGTTSCEEEEEEEESSCCC
T ss_pred             cCCc-cCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCc----hhhhhhceeeEEEeecccccc
Confidence            9985 4444  799999999999999874 4688999999999999999997532    2334566  9999999998  


Q ss_pred             cccCCCCCCCCC-----------------CccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC
Q 044353          156 YGGVPKFDSPSV-----------------PLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE  217 (596)
Q Consensus       156 ~~~~~~~~~~~~-----------------~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~  217 (596)
                      ++..+..+....                 .......+.. +.+++++|...-.........+...++++.++++++.+.+
T Consensus       184 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~  263 (562)
T 3a79_B          184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW  263 (562)
T ss_dssp             CSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH
T ss_pred             cccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH
Confidence            655554432211                 0000011112 4455555431100000011122335666666666655542


Q ss_pred             CC----CcccCCCCCCcEEEcccccccccCCccC-----cCCCCCcEEEccCCcccccCChhhc---CCCCCCEEEccCC
Q 044353          218 DI----PDCWMNWPRLRMLNLGNNNFTGSLPMSI-----GALNSLMSLNLRNNRLSGIIPTSFR---NLSILKALDMGEN  285 (596)
Q Consensus       218 ~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~~~~---~l~~L~~L~L~~n  285 (596)
                      ..    +.. ...++|++|++++|.+++.+|..+     ..++.|+.+++..+.+ ......+.   ...+|+.|++++|
T Consensus       264 ~~~~~~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n  341 (562)
T 3a79_B          264 KCSVKLFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDT  341 (562)
T ss_dssp             HHHHHHHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESS
T ss_pred             HHHHHHHHh-hhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCC
Confidence            11    111 123467777777777776666655     4455555555555554 11112221   1245667777776


Q ss_pred             cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc--cCCccccccccCcccCCCCCCCCcc
Q 044353          286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG--TIPRCINNFSAMATTDSSDPNSGIF  363 (596)
Q Consensus       286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~l~l~~~~~~~~  363 (596)
                      .+. ..+  ....+++|++|++++|.+++..|..+..+++|++|++++|.+++  .+|..+..+++|+.++++.+.....
T Consensus       342 ~~~-~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~  418 (562)
T 3a79_B          342 PFI-HMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSH  418 (562)
T ss_dssp             CCC-CCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSC
T ss_pred             Ccc-ccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCc
Confidence            654 221  11245667777777776666666666666777777777776664  2234566666666666665543221


Q ss_pred             ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353          364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  443 (596)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  443 (596)
                      ..                   ...+..+++|+.|++++|.+++..|..+.  ++|+.|+|++|+++ .+|..+..+++|+
T Consensus       419 ~~-------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~  476 (562)
T 3a79_B          419 AY-------------------DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQ  476 (562)
T ss_dssp             CS-------------------SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCS
T ss_pred             cC-------------------hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCC
Confidence            00                   11123467799999999999877766554  78999999999998 6777777999999


Q ss_pred             EEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCC
Q 044353          444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSST  484 (596)
Q Consensus       444 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~  484 (596)
                      +|++++|+++.+.+..+..+++|+.|++++|++.|.|+..+
T Consensus       477 ~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~  517 (562)
T 3a79_B          477 ELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR  517 (562)
T ss_dssp             EEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred             EEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchHH
Confidence            99999999995444458899999999999999999887543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.1e-38  Score=330.96  Aligned_cols=380  Identities=17%  Similarity=0.176  Sum_probs=258.5

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe-CCCCCCCCCccEEEcc
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI-NPNWVPPFQLAFLELR  102 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~  102 (596)
                      +.++.+++.++ .+|. +  .++|++|+|++|.+++..+. .|.++++|++|++++|.+.+.+ +..|..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNET-SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTT-TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChh-HhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            45777777777 3454 2  27889999999988744344 7888888888888888876444 5578888888888888


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccCcCcccCChh-HHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353          103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRG-FWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD  181 (596)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~  181 (596)
                      +|++.+..|..++++++|++|++++|.+++..+.. .+..+++|++|++++|++++..+..+                  
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------  149 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------------------  149 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG------------------
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc------------------
Confidence            88887777778888888888888888776533322 12334555555555555432211110                  


Q ss_pred             cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCC--CCCcEEEcccccccccCCccCcCCCCCcEEEcc
Q 044353          182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNW--PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR  259 (596)
Q Consensus       182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  259 (596)
                                       +..+++|++|++++|.+.+..+..+..+  .+|+.|++++|.+.+..+..+..          
T Consensus       150 -----------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------  202 (455)
T 3v47_A          150 -----------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------  202 (455)
T ss_dssp             -----------------GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH----------
T ss_pred             -----------------cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc----------
Confidence                             1113455555555555554444444433  34444555554444322211110          


Q ss_pred             CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhh--cccccEEEccCCcCcC----------cCCcccC--CCCC
Q 044353          260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGET--FSRLMILNLRSNKFHG----------DFPIQLC--RLGS  325 (596)
Q Consensus       260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--l~~L~~L~L~~n~l~~----------~~~~~~~--~l~~  325 (596)
                            .....+..+++|++|++++|.+.+..|..+...  .++|+.|++++|...+          ..+..+.  ..++
T Consensus       203 ------~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (455)
T 3v47_A          203 ------EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASG  276 (455)
T ss_dssp             ------HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSC
T ss_pred             ------cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccC
Confidence                  000012234556666666665554444444321  1456666666553332          1112222  2368


Q ss_pred             CcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc
Q 044353          326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS  405 (596)
Q Consensus       326 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  405 (596)
                      |+.|++++|.+++..|..+..+                                            ++|+.|++++|.++
T Consensus       277 L~~L~l~~n~l~~~~~~~~~~l--------------------------------------------~~L~~L~Ls~n~l~  312 (455)
T 3v47_A          277 VKTCDLSKSKIFALLKSVFSHF--------------------------------------------TDLEQLTLAQNEIN  312 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTC--------------------------------------------TTCCEEECTTSCCC
T ss_pred             ceEEEecCccccccchhhcccC--------------------------------------------CCCCEEECCCCccc
Confidence            9999999999998777776654                                            44899999999999


Q ss_pred             ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-C
Q 044353          406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-T  484 (596)
Q Consensus       406 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~  484 (596)
                      +..|..|..+++|++|+|++|++++..+..++.+++|++|++++|++++..|..|..+++|++|++++|++++..+.. .
T Consensus       313 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  392 (455)
T 3v47_A          313 KIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD  392 (455)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTT
T ss_pred             ccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhc
Confidence            888999999999999999999999888999999999999999999999998999999999999999999999766654 5


Q ss_pred             ccCccccccccCCC-CCCCC
Q 044353          485 QLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       485 ~~~~l~~~~~~~n~-lc~~~  503 (596)
                      .++.++.+++++|+ .|.+|
T Consensus       393 ~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          393 RLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TCTTCCEEECCSSCBCCCTT
T ss_pred             cCCcccEEEccCCCcccCCC
Confidence            78899999999999 67666

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=8.8e-38  Score=335.90  Aligned_cols=441  Identities=17%  Similarity=0.153  Sum_probs=325.6

Q ss_pred             CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccE
Q 044353           19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAF   98 (596)
Q Consensus        19 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~   98 (596)
                      .+...+++++++|.++. +|..+.  ++|++|+|++|.++ .++...|.++++|++|++++|.+++..+.+|..+++|++
T Consensus        29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  104 (562)
T 3a79_B           29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEY  104 (562)
T ss_dssp             ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCE
Confidence            45556899999999995 676554  89999999999998 566558999999999999999999998999999999999


Q ss_pred             EEccCCCCCCCcchhhcCCCCCcEEEcccCcCccc-CChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353           99 LELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAK-IPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG  177 (596)
Q Consensus        99 L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  177 (596)
                      |++++|+++ .+|..  .+++|++|++++|++++. .|..+ ..+++|++|++++|++++.....         ++.+.-
T Consensus       105 L~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~-~~l~~L~~L~L~~n~l~~~~~~~---------l~~L~L  171 (562)
T 3a79_B          105 LDVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEF-GNLTKLTFLGLSAAKFRQLDLLP---------VAHLHL  171 (562)
T ss_dssp             EECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGG-GGCTTCCEEEEECSBCCTTTTGG---------GTTSCE
T ss_pred             EECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhh-cccCcccEEecCCCccccCchhh---------hhhcee
Confidence            999999998 45544  799999999999999853 33554 55899999999999986521111         122211


Q ss_pred             ceEEcccCcc--cccccccccc----------------------CCCCCCCccEEeCcCCcC-----CCCCCcccCCCCC
Q 044353          178 SIFDLSNNAL--SGSIFHLICQ----------------------GENFSKNIEFLKLSKNHF-----SEDIPDCWMNWPR  228 (596)
Q Consensus       178 ~~l~ls~n~l--~~~~~~~~~~----------------------~l~~~~~L~~L~l~~n~l-----~~~~~~~~~~l~~  228 (596)
                      +.++++.|.+  .+..+..+..                      .+..+++|+.+++++|..     .+ ....+..+++
T Consensus       172 ~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~-~~~~l~~l~~  250 (562)
T 3a79_B          172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMT-FLSELTRGPT  250 (562)
T ss_dssp             EEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHH-HHHHHHSCSS
T ss_pred             eEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHH-HHHHHhccCc
Confidence            6678888777  5544443332                      112234455555555431     11 1112344555


Q ss_pred             CcEEEccccccccc----CCccCcCCCCCcEEEccCCcccccCChhh-----cCCCCCCEEEccCCcccccCch-hhhhh
Q 044353          229 LRMLNLGNNNFTGS----LPMSIGALNSLMSLNLRNNRLSGIIPTSF-----RNLSILKALDMGENELVGNIPT-WIGET  298 (596)
Q Consensus       229 L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~~~~-~~~~~  298 (596)
                      |+.++++++.+.+.    .+..+ ..++|++|++++|.+.+..|..+     ..++.|+.+++..+.+  .+|. +++..
T Consensus       251 L~~L~L~~~~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~  327 (562)
T 3a79_B          251 LLNVTLQHIETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSV  327 (562)
T ss_dssp             CEEEEEEEEEECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHH
T ss_pred             ceEEEecCCcCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhh
Confidence            55565555544421    11111 23589999999999998777776     6677777777777776  5563 33321


Q ss_pred             --cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353          299 --FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA  376 (596)
Q Consensus       299 --l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  376 (596)
                        ..+|++|++++|.+....  ....+++|++|++++|.+++..|..+.++++|+.++++.+......            
T Consensus       328 ~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~------------  393 (562)
T 3a79_B          328 FAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFF------------  393 (562)
T ss_dssp             HHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTT------------
T ss_pred             hccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcc------------
Confidence              257999999999886322  1267899999999999999989999999999999999887543210            


Q ss_pred             EEEeccceeecccccccccEEEccCCcccccCCc-cccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353          377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV-EVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  455 (596)
Q Consensus       377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  455 (596)
                            ..+..+..+++|+.|++++|.+++.+|. .+..+++|++|+|++|++++.+|..+.  ++|+.|++++|+++ .
T Consensus       394 ------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~  464 (562)
T 3a79_B          394 ------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-S  464 (562)
T ss_dssp             ------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-C
T ss_pred             ------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-c
Confidence                  1112345688999999999999974554 588999999999999999887777654  79999999999999 5


Q ss_pred             CCccccCCCCCCEEecccccCccCCCC-CCccCccccccccCCC-CCCCC
Q 044353          456 IPQSMSNLSFLNYLNLSNNNLNGEIPS-STQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       456 ~~~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +|..+..+++|+.|++++|+++...+. ...++.++.+++++|+ .|.++
T Consensus       465 ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          465 IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            666666999999999999999954444 4678889999999999 67654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-37  Score=326.72  Aligned_cols=346  Identities=21%  Similarity=0.202  Sum_probs=211.5

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS  103 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  103 (596)
                      +.++.++++++ .+|..+.  +++++|+|++|+++ .++...|.++++|++|+|++|.+....+..|..+++|++|+|++
T Consensus        14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccc-eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            45666666665 3444432  46677777777766 33333666666666666666666665556666666666666666


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcc
Q 044353          104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS  183 (596)
Q Consensus       104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls  183 (596)
                      |+++...+..|.++++|++|++++|.+++..+..+                                             
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~---------------------------------------------  124 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF---------------------------------------------  124 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTT---------------------------------------------
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccccCChhHc---------------------------------------------
Confidence            66554444445555555555555555543222211                                             


Q ss_pred             cCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc
Q 044353          184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL  263 (596)
Q Consensus       184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  263 (596)
                                      ..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus       125 ----------------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i  188 (477)
T 2id5_A          125 ----------------QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNI  188 (477)
T ss_dssp             ----------------TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred             ----------------cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcC
Confidence                            1145566666666666655566666777777777777777655555666777777777777777


Q ss_pred             cccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCcc
Q 044353          264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRC  343 (596)
Q Consensus       264 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  343 (596)
                      .+..+..|..+++|+.|++++|...+.+|...+ ...+|+.|++++|.++...+..+..+++|+.|++++|.++      
T Consensus       189 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------  261 (477)
T 2id5_A          189 NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS------  261 (477)
T ss_dssp             CEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCC------
T ss_pred             cEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCC------
Confidence            766666677777777777777666555665555 3446666666666666333344555555555555555554      


Q ss_pred             ccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeec
Q 044353          344 INNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNL  423 (596)
Q Consensus       344 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  423 (596)
                                                                                    +..+..|..+++|++|+|
T Consensus       262 --------------------------------------------------------------~~~~~~~~~l~~L~~L~L  279 (477)
T 2id5_A          262 --------------------------------------------------------------TIEGSMLHELLRLQEIQL  279 (477)
T ss_dssp             --------------------------------------------------------------EECTTSCTTCTTCCEEEC
T ss_pred             --------------------------------------------------------------ccChhhccccccCCEEEC
Confidence                                                                          344445566666777777


Q ss_pred             cCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCC
Q 044353          424 SHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGA  502 (596)
Q Consensus       424 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~  502 (596)
                      ++|++++..|..|..+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|+..+.+.......+.++. .|..
T Consensus       280 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~  359 (477)
T 2id5_A          280 VGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCAT  359 (477)
T ss_dssp             CSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEE
T ss_pred             CCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCC
Confidence            777776666667777777777777777777666666677777777777777777766554444433444455554 5654


Q ss_pred             C
Q 044353          503 P  503 (596)
Q Consensus       503 ~  503 (596)
                      |
T Consensus       360 p  360 (477)
T 2id5_A          360 P  360 (477)
T ss_dssp             S
T ss_pred             c
Confidence            4

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.5e-37  Score=320.30  Aligned_cols=383  Identities=21%  Similarity=0.278  Sum_probs=196.7

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCC-------------CEEECcCCcCccccChhhhh
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANL-------------EYLDLSNNKLNGTVSEIHFL   67 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L-------------~~L~Ls~n~i~~~~~~~~~~   67 (596)
                      +|++++|.+ +.+|++++++++|++|++++|.+++.+|.+++.+++|             ++|++++|.++ .+|.    
T Consensus        15 ~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~lp~----   88 (454)
T 1jl5_A           15 EPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-SLPE----   88 (454)
T ss_dssp             --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-CCCS----
T ss_pred             hhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccc-cCCC----
Confidence            367778888 6788888888888888888888887788888777654             88888888876 4543    


Q ss_pred             cCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcE
Q 044353           68 NLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDY  147 (596)
Q Consensus        68 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~  147 (596)
                      -.++|++|++++|.+++ ++.   ..++|++|++++|++.+... .   .++|++|++++|.+++ +| . +..+++|++
T Consensus        89 ~~~~L~~L~l~~n~l~~-lp~---~~~~L~~L~l~~n~l~~l~~-~---~~~L~~L~L~~n~l~~-lp-~-~~~l~~L~~  157 (454)
T 1jl5_A           89 LPPHLESLVASCNSLTE-LPE---LPQSLKSLLVDNNNLKALSD-L---PPLLEYLGVSNNQLEK-LP-E-LQNSSFLKI  157 (454)
T ss_dssp             CCTTCSEEECCSSCCSS-CCC---CCTTCCEEECCSSCCSCCCS-C---CTTCCEEECCSSCCSS-CC-C-CTTCTTCCE
T ss_pred             CcCCCCEEEccCCcCCc-ccc---ccCCCcEEECCCCccCcccC-C---CCCCCEEECcCCCCCC-Cc-c-cCCCCCCCE
Confidence            13678888888887775 332   23678888888887764221 1   1578888888887774 66 3 345677888


Q ss_pred             EEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCC
Q 044353          148 LNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWP  227 (596)
Q Consensus       148 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  227 (596)
                      |++++|++++ .|....           .-+.+++++|.+.+ ++     .++.+++|+.|++++|.+.+ +|..   .+
T Consensus       158 L~l~~N~l~~-lp~~~~-----------~L~~L~L~~n~l~~-l~-----~~~~l~~L~~L~l~~N~l~~-l~~~---~~  215 (454)
T 1jl5_A          158 IDVDNNSLKK-LPDLPP-----------SLEFIAAGNNQLEE-LP-----ELQNLPFLTAIYADNNSLKK-LPDL---PL  215 (454)
T ss_dssp             EECCSSCCSC-CCCCCT-----------TCCEEECCSSCCSS-CC-----CCTTCTTCCEEECCSSCCSS-CCCC---CT
T ss_pred             EECCCCcCcc-cCCCcc-----------cccEEECcCCcCCc-Cc-----cccCCCCCCEEECCCCcCCc-CCCC---cC
Confidence            8888877753 222110           00445555554443 11     13334555555555555443 2211   12


Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL  307 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  307 (596)
                      +|++|++++|.++ .+| .+..+++|++|++++|.+.+. |.   .+++|+.|++++|.+. .+|..    +++|++|++
T Consensus       216 ~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l-~~---~~~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l  284 (454)
T 1jl5_A          216 SLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL-PD---LPPSLEALNVRDNYLT-DLPEL----PQSLTFLDV  284 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC-CS---CCTTCCEEECCSSCCS-CCCCC----CTTCCEEEC
T ss_pred             cccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc-cc---cccccCEEECCCCccc-ccCcc----cCcCCEEEC
Confidence            4555555555554 333 244555555555555555432 21   1244555555555544 23321    244555555


Q ss_pred             cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353          308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY  387 (596)
Q Consensus       308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (596)
                      ++|.+++ ++..   .++|+.|++++|.+++ ++                                              
T Consensus       285 s~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----------------------------------------------  313 (454)
T 1jl5_A          285 SENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----------------------------------------------  313 (454)
T ss_dssp             CSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----------------------------------------------
T ss_pred             cCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----------------------------------------------
Confidence            5554443 1110   1345555555554442 11                                              


Q ss_pred             ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcc--cCCccccCC--
Q 044353          388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG--QIPQSMSNL--  463 (596)
Q Consensus       388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~l--  463 (596)
                       ...++|+.|++++|.+++ +|..   +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|..+..+  
T Consensus       314 -~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~  384 (454)
T 1jl5_A          314 -DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRM  384 (454)
T ss_dssp             -CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEEC
T ss_pred             -CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhh
Confidence             012468899999999885 5554   578999999999988 5665   46889999999999987  677777766  


Q ss_pred             -----------CCCCEEecccccCcc--CCCCCCccCccccccccCCC
Q 044353          464 -----------SFLNYLNLSNNNLNG--EIPSSTQLQSFGASSFAGND  498 (596)
Q Consensus       464 -----------~~L~~L~ls~N~l~~--~~~~~~~~~~l~~~~~~~n~  498 (596)
                                 ++|+.|++++|++++  .+|.     .+..+.+.+|.
T Consensus       385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~  427 (454)
T 1jl5_A          385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSER  427 (454)
T ss_dssp             CC----------------------------------------------
T ss_pred             cccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcc
Confidence                       789999999999987  4543     34555555554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.5e-35  Score=309.12  Aligned_cols=348  Identities=24%  Similarity=0.322  Sum_probs=282.0

Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353           18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA   97 (596)
Q Consensus        18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   97 (596)
                      ..+++++.|+++++.++. +| .+..+++|++|++++|.++ .++.  +.++++|++|++++|.+....+  +..+++|+
T Consensus        43 ~~l~~l~~L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  115 (466)
T 1o6v_A           43 TDLDQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLT-DITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT  115 (466)
T ss_dssp             HHHHTCCEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hHhccccEEecCCCCCcc-Cc-chhhhcCCCEEECCCCccC-Cchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence            347789999999999885 44 4788999999999999987 4543  8899999999999998876654  88899999


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353           98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG  177 (596)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  177 (596)
                      +|++++|.+.+..+  +.++++|++|++++|.+++ ++.  +..+++|++|++++ .+.+.                   
T Consensus       116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~-~~~~~-------------------  170 (466)
T 1o6v_A          116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-ISA--LSGLTSLQQLSFGN-QVTDL-------------------  170 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CGG--GTTCTTCSEEEEEE-SCCCC-------------------
T ss_pred             EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Chh--hccCCcccEeecCC-cccCc-------------------
Confidence            99999999876544  8889999999999998874 332  45578899888853 32110                   


Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN  257 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  257 (596)
                                         ..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++..+  +..+++|+.|+
T Consensus       171 -------------------~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  227 (466)
T 1o6v_A          171 -------------------KPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELS  227 (466)
T ss_dssp             -------------------GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEE
T ss_pred             -------------------hhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEE
Confidence                               1133478999999999998764  347889999999999999886554  67789999999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+.+.  ..+..+++|+.|++++|.+.+ ++.  +..+++|++|++++|.+++..+  +..+++|+.|++++|.++
T Consensus       228 l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~-~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          228 LNGNQLKDI--GTLASLTNLTDLDLANNQISN-LAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE  300 (466)
T ss_dssp             CCSSCCCCC--GGGGGCTTCSEEECCSSCCCC-CGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS
T ss_pred             CCCCCcccc--hhhhcCCCCCEEECCCCcccc-chh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc
Confidence            999998864  468889999999999999974 443  3368999999999999986443  788999999999999987


Q ss_pred             ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353          338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG  417 (596)
Q Consensus       338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  417 (596)
                      +..+  +..                                            +++|+.|++++|.+++..|  +..+++
T Consensus       301 ~~~~--~~~--------------------------------------------l~~L~~L~L~~n~l~~~~~--~~~l~~  332 (466)
T 1o6v_A          301 DISP--ISN--------------------------------------------LKNLTYLTLYFNNISDISP--VSSLTK  332 (466)
T ss_dssp             CCGG--GGG--------------------------------------------CTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred             Cchh--hcC--------------------------------------------CCCCCEEECcCCcCCCchh--hccCcc
Confidence            5332  222                                            5668999999999986655  788999


Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      |+.|++++|++++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|++++.
T Consensus       333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            99999999999854  468899999999999999998776  88999999999999999874

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.5e-35  Score=308.21  Aligned_cols=354  Identities=19%  Similarity=0.174  Sum_probs=252.3

Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC
Q 044353            9 FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP   88 (596)
Q Consensus         9 l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   88 (596)
                      ..+..+..++++++|++|++++|.+++. | .+..+++|++|++++|++++ ++   +.++++|++|++++|.+++.   
T Consensus        30 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~---~~~l~~L~~L~Ls~N~l~~~---  100 (457)
T 3bz5_A           30 MQATDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD---LSQNTNLTYLACDSNKLTNL---  100 (457)
T ss_dssp             CCTTSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSCC---
T ss_pred             cCcccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec---cccCCCCCEEECcCCCCcee---
Confidence            3444566788899999999999999965 5 68899999999999999984 43   78899999999999998864   


Q ss_pred             CCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCC
Q 044353           89 NWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVP  168 (596)
Q Consensus        89 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~  168 (596)
                      .+..+++|++|++++|++++. +  ++.+++|++|++++|++++ ++   +..+++|++|++++|+..+..+        
T Consensus       101 ~~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~~--------  165 (457)
T 3bz5_A          101 DVTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKLD--------  165 (457)
T ss_dssp             CCTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCCC--------
T ss_pred             ecCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCcccccc--------
Confidence            288899999999999999864 3  8889999999999999986 43   3457889999999885432221        


Q ss_pred             ccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCc
Q 044353          169 LITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIG  248 (596)
Q Consensus       169 ~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  248 (596)
                                                    +..+++|+.|++++|.+++. |  +..+++|+.|++++|.+++.   .+.
T Consensus       166 ------------------------------~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l~  209 (457)
T 3bz5_A          166 ------------------------------VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DLN  209 (457)
T ss_dssp             ------------------------------CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CCT
T ss_pred             ------------------------------cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---ccc
Confidence                                          12245666666666666652 2  55666666666666666643   256


Q ss_pred             CCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEE----------EccCCcCcCcCCc
Q 044353          249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL----------NLRSNKFHGDFPI  318 (596)
Q Consensus       249 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~~~  318 (596)
                      .+++|+.|++++|.++++ |  +..+++|+.|++++|++++ +|..   .+++|+.|          ++++|.+.+.+| 
T Consensus       210 ~l~~L~~L~Ls~N~l~~i-p--~~~l~~L~~L~l~~N~l~~-~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~-  281 (457)
T 3bz5_A          210 QNIQLTFLDCSSNKLTEI-D--VTPLTQLTYFDCSVNPLTE-LDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ-  281 (457)
T ss_dssp             TCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEE-
T ss_pred             cCCCCCEEECcCCccccc-C--ccccCCCCEEEeeCCcCCC-cCHH---HCCCCCEEeccCCCCCEEECCCCccCCccc-
Confidence            666666666666666653 3  5566666666776666653 3321   24444444          444454444443 


Q ss_pred             ccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEE
Q 044353          319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSID  398 (596)
Q Consensus       319 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  398 (596)
                       +..+++|+.|++++|...+.+|..   ...++.++++                                 .+++|+.|+
T Consensus       282 -~~~l~~L~~L~Ls~n~~l~~l~~~---~~~L~~L~l~---------------------------------~~~~L~~L~  324 (457)
T 3bz5_A          282 -AEGCRKIKELDVTHNTQLYLLDCQ---AAGITELDLS---------------------------------QNPKLVYLY  324 (457)
T ss_dssp             -CTTCTTCCCCCCTTCTTCCEEECT---TCCCSCCCCT---------------------------------TCTTCCEEE
T ss_pred             -ccccccCCEEECCCCcccceeccC---CCcceEechh---------------------------------hcccCCEEE
Confidence             456677888888887766666642   3344444443                                 246689999


Q ss_pred             ccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353          399 ISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       399 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  478 (596)
                      +++|.+++. +  +..+++|+.|++++|++++        ++.|..|++++|.+++.     ..+..|+.+++++|+++|
T Consensus       325 L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g  388 (457)
T 3bz5_A          325 LNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTI  388 (457)
T ss_dssp             CTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEE
T ss_pred             CCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEE
Confidence            999999863 3  8888999999999998874        24566678888888865     244567888999999999


Q ss_pred             CCCCC
Q 044353          479 EIPSS  483 (596)
Q Consensus       479 ~~~~~  483 (596)
                      .+|..
T Consensus       389 ~ip~~  393 (457)
T 3bz5_A          389 AVSPD  393 (457)
T ss_dssp             ECCTT
T ss_pred             EcChh
Confidence            98864

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=4.8e-35  Score=308.38  Aligned_cols=275  Identities=18%  Similarity=0.158  Sum_probs=190.6

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      ++.++++++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|+|++|.+++..+ ..|.++++|++|++++|.
T Consensus        16 v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           16 VLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-GAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-hhhhCCccCCEEECCCCc
Confidence            456677776 4566553  689999999999998888999999999999999999984445 489999999999999999


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      ++...+..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+ ..+++|++|++++|++      
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l------  164 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-SGLNSLEQLTLEKCNL------  164 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSS-TTCTTCCEEEEESCCC------
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhc-cCCCCCCEEECCCCcC------
Confidence            998777789999999999999999998888999999999999999998875444433 3345555555555544      


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG  241 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  241 (596)
                                                                            ++..+..+..+++|+.|++++|.+.+
T Consensus       165 ------------------------------------------------------~~~~~~~l~~l~~L~~L~l~~n~i~~  190 (477)
T 2id5_A          165 ------------------------------------------------------TSIPTEALSHLHGLIVLRLRHLNINA  190 (477)
T ss_dssp             ------------------------------------------------------SSCCHHHHTTCTTCCEEEEESCCCCE
T ss_pred             ------------------------------------------------------cccChhHhcccCCCcEEeCCCCcCcE
Confidence                                                                  33333344455555555555555554


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      ..+..|..+++|+.|++++|...+..+.......+|+.|++++|.++ .+|...+..+++|+.|++++|.+++..+..+.
T Consensus       191 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  269 (477)
T 2id5_A          191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLH  269 (477)
T ss_dssp             ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCTTCCEEECCSSCCCEECTTSCT
T ss_pred             eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCccccCeeECCCCcCCccChhhcc
Confidence            44445555555555555555444444444334445666666666665 45544444566666666666666655555566


Q ss_pred             CCCCCcEEeCCCCcCcccCCc
Q 044353          322 RLGSLQILDVAYNSLSGTIPR  342 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~~~~~~  342 (596)
                      .+++|+.|++++|.+++..|.
T Consensus       270 ~l~~L~~L~L~~n~l~~~~~~  290 (477)
T 2id5_A          270 ELLRLQEIQLVGGQLAVVEPY  290 (477)
T ss_dssp             TCTTCCEEECCSSCCSEECTT
T ss_pred             ccccCCEEECCCCccceECHH
Confidence            666666666666665543333

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-34  Score=303.00  Aligned_cols=340  Identities=22%  Similarity=0.311  Sum_probs=280.8

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      |+++++.+.. +| .+..+++|++|++++|.+++..+  +..+++|++|++++|++. .++.  +.++++|++|++++|.
T Consensus        51 L~l~~~~i~~-l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L~~n~  123 (466)
T 1o6v_A           51 LQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLTLFNNQ  123 (466)
T ss_dssp             EECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSC
T ss_pred             EecCCCCCcc-Cc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccc-cChh--hcCCCCCCEEECCCCC
Confidence            6788888875 44 48899999999999999997644  899999999999999998 4443  8999999999999999


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      +....+  +..+++|++|++++|.+.+.  ..+..+++|+.|++++ .+.+. +.  +..+++|++|++++|++++.   
T Consensus       124 l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~-~~~~~-~~--~~~l~~L~~L~l~~n~l~~~---  192 (466)
T 1o6v_A          124 ITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFGN-QVTDL-KP--LANLTTLERLDISSNKVSDI---  192 (466)
T ss_dssp             CCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEEE-SCCCC-GG--GTTCTTCCEEECCSSCCCCC---
T ss_pred             CCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecCC-cccCc-hh--hccCCCCCEEECcCCcCCCC---
Confidence            886543  88999999999999998753  2588999999999974 44432 22  45689999999999987421   


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG  241 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  241 (596)
                                                         ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+++
T Consensus       193 -----------------------------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  235 (466)
T 1o6v_A          193 -----------------------------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD  235 (466)
T ss_dssp             -----------------------------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC
T ss_pred             -----------------------------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc
Confidence                                               012237899999999999987655  6778999999999999885


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      .  ..+..+++|+.|++++|.+.+..+  +..+++|+.|++++|.+. .++. + ..+++|+.|++++|.+++..+  +.
T Consensus       236 ~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~-~-~~l~~L~~L~L~~n~l~~~~~--~~  306 (466)
T 1o6v_A          236 I--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP-L-AGLTALTNLELNENQLEDISP--IS  306 (466)
T ss_dssp             C--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG-G-TTCTTCSEEECCSSCCSCCGG--GG
T ss_pred             c--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc-c-cCCCccCeEEcCCCcccCchh--hc
Confidence            3  467889999999999999986654  889999999999999998 4554 3 368999999999999986543  78


Q ss_pred             CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC
Q 044353          322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK  401 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  401 (596)
                      .+++|+.|++++|++++..|  +..                                            +++|+.|++++
T Consensus       307 ~l~~L~~L~L~~n~l~~~~~--~~~--------------------------------------------l~~L~~L~l~~  340 (466)
T 1o6v_A          307 NLKNLTYLTLYFNNISDISP--VSS--------------------------------------------LTKLQRLFFYN  340 (466)
T ss_dssp             GCTTCSEEECCSSCCSCCGG--GGG--------------------------------------------CTTCCEEECCS
T ss_pred             CCCCCCEEECcCCcCCCchh--hcc--------------------------------------------CccCCEeECCC
Confidence            89999999999999886443  222                                            55689999999


Q ss_pred             CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCccc
Q 044353          402 NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQ  455 (596)
Q Consensus       402 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  455 (596)
                      |.+++.  ..+..+++|+.|++++|++++..|  +..+++|+.|++++|.+++.
T Consensus       341 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~  390 (466)
T 1o6v_A          341 NKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNA  390 (466)
T ss_dssp             SCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred             CccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence            999854  478899999999999999997776  88999999999999999963

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.3e-34  Score=296.68  Aligned_cols=335  Identities=19%  Similarity=0.224  Sum_probs=221.7

Q ss_pred             CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353           43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY  122 (596)
Q Consensus        43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  122 (596)
                      .++++++|++++|.++ .+|...|.++++|++|++++|.+....+..|..+++|++|++++|.+.+..+..++++++|++
T Consensus        43 ~l~~l~~l~l~~~~l~-~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  121 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  121 (390)
T ss_dssp             GGCCCSEEEEESCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             ccCCceEEEecCCchh-hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCE
Confidence            4688999999999987 788767899999999999999998887788888999999999999988887888888888888


Q ss_pred             EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353          123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS  202 (596)
Q Consensus       123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~  202 (596)
                      |++++|.++ .+|..++..+++|++|++++|++                                               
T Consensus       122 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l-----------------------------------------------  153 (390)
T 3o6n_A          122 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNL-----------------------------------------------  153 (390)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSCC-----------------------------------------------
T ss_pred             EECCCCccC-cCCHHHhcCCCCCcEEECCCCcc-----------------------------------------------
Confidence            888888887 45555444455566655555554                                               


Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                                   .+..+..|..+++|++|++++|.+++.   .+..+++|+.|++++|.+.+.     ...++|+.|++
T Consensus       154 -------------~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~~-----~~~~~L~~L~l  212 (390)
T 3o6n_A          154 -------------ERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  212 (390)
T ss_dssp             -------------CBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSEE-----ECCSSCSEEEC
T ss_pred             -------------CccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccccccc-----CCCCcceEEEC
Confidence                         333333344444444444444444422   123334445555555444422     12234555555


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      ++|.+. .+|..   ..++|+.|++++|.+++.  ..+..+++|++|++++|.+++..|..+..                
T Consensus       213 ~~n~l~-~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~----------------  270 (390)
T 3o6n_A          213 SHNSIN-VVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVK----------------  270 (390)
T ss_dssp             CSSCCC-EEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTT----------------
T ss_pred             CCCeee-ecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccc----------------
Confidence            555554 33322   134556666666655532  34555666666666666666554544443                


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  442 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  442 (596)
                                                  +++|+.|++++|.++ .++..+..+++|++|+|++|+++ .+|..+..+++|
T Consensus       271 ----------------------------l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L  320 (390)
T 3o6n_A          271 ----------------------------MQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  320 (390)
T ss_dssp             ----------------------------CSSCCEEECCSSCCC-EEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             ----------------------------cccCCEEECCCCcCc-ccCcccCCCCCCCEEECCCCcce-ecCccccccCcC
Confidence                                        233566666666665 34555677888999999999988 567778888999


Q ss_pred             CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +.|++++|.++.. +  +..+++|+.|++++|++.|.+.. ..+..+....+.+++ .|..+
T Consensus       321 ~~L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~  378 (390)
T 3o6n_A          321 ENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID  378 (390)
T ss_dssp             SEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred             CEEECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence            9999999999854 2  67788999999999999886433 233444455556665 66543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=1.3e-34  Score=286.82  Aligned_cols=258  Identities=31%  Similarity=0.576  Sum_probs=240.6

Q ss_pred             CCccEEeCcCCcCCC--CCCcccCCCCCCcEEEccc-ccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          203 KNIEFLKLSKNHFSE--DIPDCWMNWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      .+++.|++++|.+.+  .+|..+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+.+..|..|..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999998  8899999999999999995 9999899999999999999999999999999999999999999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC-CCcEEeCCCCcCcccCCccccccccCcccCCCCC
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG-SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDP  358 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~  358 (596)
                      |++++|.+.+.+|..+. .+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..+           
T Consensus       130 L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----------  197 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-----------  197 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGC-----------
T ss_pred             EeCCCCccCCcCChHHh-cCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCC-----------
Confidence            99999999988888877 799999999999999988999999998 99999999999998888777543           


Q ss_pred             CCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC
Q 044353          359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  438 (596)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  438 (596)
                                                       + |+.|++++|.+++..|..|..+++|+.|+|++|++++.+|. +..
T Consensus       198 ---------------------------------~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~  242 (313)
T 1ogq_A          198 ---------------------------------N-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGL  242 (313)
T ss_dssp             ---------------------------------C-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCC
T ss_pred             ---------------------------------c-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccc
Confidence                                             2 78999999999999999999999999999999999966665 888


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCCCC
Q 044353          439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNC  507 (596)
Q Consensus       439 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~~c  507 (596)
                      +++|++|++++|++++.+|..+..+++|+.|++++|++++.+|....++.++.+.+.+|+ +|+.|...|
T Consensus       243 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~~C  312 (313)
T 1ogq_A          243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPAC  312 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCC
T ss_pred             cCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCCCC
Confidence            999999999999999999999999999999999999999999999899999999999999 999887777

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.3e-34  Score=296.35  Aligned_cols=371  Identities=24%  Similarity=0.262  Sum_probs=203.4

Q ss_pred             CCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCC-------------cEEEccCCeeeeE
Q 044353           19 RFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQL-------------LVFRAHGNSLVFK   85 (596)
Q Consensus        19 ~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~   85 (596)
                      +.++|++|++++|.+ +.+|.+++++++|++|++++|++.|.+|. .++++.+|             ++|++++|.+++.
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~-~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l   86 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPP-GNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL   86 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCT-TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCc-ccccchhcchhhhhhhhccCCCEEEecCCccccC
Confidence            568999999999999 58899999999999999999999888887 78887765             7777777776542


Q ss_pred             eCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCC
Q 044353           86 INPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSP  165 (596)
Q Consensus        86 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~  165 (596)
                      . .   -.++|++|++++|.+++ +|..   .++|+.|++++|.+++ ++..    .++|++|++++|++++ .|. +..
T Consensus        87 p-~---~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~----~~~L~~L~L~~n~l~~-lp~-~~~  151 (454)
T 1jl5_A           87 P-E---LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL----PPLLEYLGVSNNQLEK-LPE-LQN  151 (454)
T ss_dssp             C-S---CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC----CTTCCEEECCSSCCSS-CCC-CTT
T ss_pred             C-C---CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC----CCCCCEEECcCCCCCC-Ccc-cCC
Confidence            2 1   13567777777777765 3432   3677777777777763 3321    2567777777777654 231 111


Q ss_pred             CCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCC
Q 044353          166 SVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLP  244 (596)
Q Consensus       166 ~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  244 (596)
                               +.. +.+++++|.+++ ++..       .++|++|++++|.+++ +| .+..+++|++|++++|.+++ +|
T Consensus       152 ---------l~~L~~L~l~~N~l~~-lp~~-------~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~  211 (454)
T 1jl5_A          152 ---------SSFLKIIDVDNNSLKK-LPDL-------PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LP  211 (454)
T ss_dssp             ---------CTTCCEEECCSSCCSC-CCCC-------CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CC
T ss_pred             ---------CCCCCEEECCCCcCcc-cCCC-------cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CC
Confidence                     111 555555555543 1111       2355555555555554 23 35555555555555555553 23


Q ss_pred             ccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC
Q 044353          245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG  324 (596)
Q Consensus       245 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  324 (596)
                      ...   ++|++|++++|.+. ..| .+..+++|++|++++|++. .+|..    +++|++|++++|.+++ +|..   .+
T Consensus       212 ~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~-~l~~~----~~~L~~L~l~~N~l~~-l~~~---~~  277 (454)
T 1jl5_A          212 DLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDL----PPSLEALNVRDNYLTD-LPEL---PQ  277 (454)
T ss_dssp             CCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSC----CTTCCEEECCSSCCSC-CCCC---CT
T ss_pred             CCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC-ccccc----ccccCEEECCCCcccc-cCcc---cC
Confidence            221   35555555555555 233 2555555555555555554 33321    2455555555555553 3322   24


Q ss_pred             CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcc
Q 044353          325 SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF  404 (596)
Q Consensus       325 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l  404 (596)
                      +|++|++++|.+++ +|.                                               ..++|+.|++++|.+
T Consensus       278 ~L~~L~ls~N~l~~-l~~-----------------------------------------------~~~~L~~L~l~~N~l  309 (454)
T 1jl5_A          278 SLTFLDVSENIFSG-LSE-----------------------------------------------LPPNLYYLNASSNEI  309 (454)
T ss_dssp             TCCEEECCSSCCSE-ESC-----------------------------------------------CCTTCCEEECCSSCC
T ss_pred             cCCEEECcCCccCc-ccC-----------------------------------------------cCCcCCEEECcCCcC
Confidence            55555555555542 110                                               124589999999999


Q ss_pred             cccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc--CCCC
Q 044353          405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG--EIPS  482 (596)
Q Consensus       405 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~--~~~~  482 (596)
                      ++ ++.   -.++|++|++++|++++ +|..   +++|++|++++|+++. +|.   .+++|++|++++|++++  .+|.
T Consensus       310 ~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~  377 (454)
T 1jl5_A          310 RS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE  377 (454)
T ss_dssp             SE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT
T ss_pred             Cc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH
Confidence            85 222   12589999999999985 6654   5899999999999994 555   47899999999999998  5554


Q ss_pred             C-Ccc-------------CccccccccCCCCC
Q 044353          483 S-TQL-------------QSFGASSFAGNDLC  500 (596)
Q Consensus       483 ~-~~~-------------~~l~~~~~~~n~lc  500 (596)
                      . ..+             +.++.+++++|++.
T Consensus       378 ~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          378 SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             TCCEEECCC-----------------------
T ss_pred             HHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            3 223             45666677777643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-33  Score=303.83  Aligned_cols=335  Identities=19%  Similarity=0.221  Sum_probs=229.5

Q ss_pred             CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353           43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY  122 (596)
Q Consensus        43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  122 (596)
                      .+.+++.+++++|.+. .+|...|.++++|++|++++|.+....+..|..+++|++|+|++|.+.+..+..|+++++|++
T Consensus        49 ~l~~l~~l~l~~~~l~-~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  127 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV  127 (597)
T ss_dssp             GGCCCSEEEESSCEES-EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             cCCCceEEEeeCCCCC-CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence            3578899999999887 777767888999999999999988887778888888899999888888877778888888888


Q ss_pred             EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353          123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS  202 (596)
Q Consensus       123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~  202 (596)
                      |++++|.++ .+|..++..+++|++|++++|.                                                
T Consensus       128 L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~------------------------------------------------  158 (597)
T 3oja_B          128 LVLERNDLS-SLPRGIFHNTPKLTTLSMSNNN------------------------------------------------  158 (597)
T ss_dssp             EECCSSCCC-CCCTTTTTTCTTCCEEECCSSC------------------------------------------------
T ss_pred             EEeeCCCCC-CCCHHHhccCCCCCEEEeeCCc------------------------------------------------
Confidence            888888877 4555444444555555555544                                                


Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                                  +.+..|..|..+++|++|++++|.+++..   +..+++|+.|++++|.+.+.     ...++|+.|++
T Consensus       159 ------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l-----~~~~~L~~L~l  218 (597)
T 3oja_B          159 ------------LERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTL-----AIPIAVEELDA  218 (597)
T ss_dssp             ------------CCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEE-----ECCTTCSEEEC
T ss_pred             ------------CCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccc-----cCCchhheeec
Confidence                        44444444555555555555555554321   23345555555555555432     22345566666


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      ++|.+. .++...   .++|+.|++++|.+++  +..+..+++|+.|++++|.+++..|..+..+               
T Consensus       219 s~n~l~-~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l---------------  277 (597)
T 3oja_B          219 SHNSIN-VVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKM---------------  277 (597)
T ss_dssp             CSSCCC-EEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTC---------------
T ss_pred             cCCccc-cccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCc---------------
Confidence            666554 333322   2456666666666654  2456666677777777777766556555443               


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  442 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  442 (596)
                                                   ++|+.|+|++|.+++ +|..+..+++|+.|+|++|.++ .+|..++.+++|
T Consensus       278 -----------------------------~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          278 -----------------------------QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             -----------------------------SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             -----------------------------cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence                                         336667777777764 4556677889999999999998 677778889999


Q ss_pred             CEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          443 ESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       443 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +.|+|++|.+++..   +..+++|+.|++++|++.|.+... .+..+....+.+++ .|+.+
T Consensus       327 ~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~~~~~-~~~~~~~~~~~~~~~~C~~~  384 (597)
T 3oja_B          327 ENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCNSLRA-LFRNVARPAVDDADQHCKID  384 (597)
T ss_dssp             SEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHHHHHH-HTTTCCTTTBCCCCCCCCTT
T ss_pred             CEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCChhHHH-HHHHHhhhccccccccCCcc
Confidence            99999999998553   677889999999999998875432 34455555666776 77654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=2e-33  Score=292.27  Aligned_cols=341  Identities=19%  Similarity=0.175  Sum_probs=239.0

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|++++|.+++. | .++.+++|++|++++|.+++. |  +..+++|++|++++|++++ ++   +.++++|++|++++|
T Consensus        46 ~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~-~~---~~~l~~L~~L~L~~N  116 (457)
T 3bz5_A           46 SLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTN-LD---VTPLTKLTYLNCDTN  116 (457)
T ss_dssp             EEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSC-CC---CTTCTTCCEEECCSS
T ss_pred             EEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCce-ee---cCCCCcCCEEECCCC
Confidence            379999999975 5 799999999999999999975 4  8899999999999999984 43   889999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCC
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVP  160 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  160 (596)
                      .+++.   .+..+++|++|++++|++++.   .++++++|+.|++++|...+.++   +..+++|++|++++|++++. +
T Consensus       117 ~l~~l---~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~l~~L~~L~ls~n~l~~l-~  186 (457)
T 3bz5_A          117 KLTKL---DVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTPQTQLTTLDCSFNKITEL-D  186 (457)
T ss_dssp             CCSCC---CCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTTCTTCCEEECCSSCCCCC-C
T ss_pred             cCCee---cCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---cccCCcCCEEECCCCcccee-c
Confidence            99874   288999999999999999874   38899999999999996544553   34578999999999998652 1


Q ss_pred             CCCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccc
Q 044353          161 KFDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNF  239 (596)
Q Consensus       161 ~~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  239 (596)
                        +.         .++. +.+++++|.+++.       .++.+++|+.|++++|.+++ +|  +..+++|+.|++++|.+
T Consensus       187 --l~---------~l~~L~~L~l~~N~l~~~-------~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l  245 (457)
T 3bz5_A          187 --VS---------QNKLLNRLNCDTNNITKL-------DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPL  245 (457)
T ss_dssp             --CT---------TCTTCCEEECCSSCCSCC-------CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCC
T ss_pred             --cc---------cCCCCCEEECcCCcCCee-------ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcC
Confidence              11         1111 4455555555442       13334555555555555554 23  44555555555555555


Q ss_pred             cccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc-
Q 044353          240 TGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI-  318 (596)
Q Consensus       240 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-  318 (596)
                      ++..   +..+++|+.|++++|              +|+.+++++|...+.+|.   ..+++|+.|++++|...+.+|. 
T Consensus       246 ~~~~---~~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~~  305 (457)
T 3bz5_A          246 TELD---VSTLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDCQ  305 (457)
T ss_dssp             SCCC---CTTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEECT
T ss_pred             CCcC---HHHCCCCCEEeccCC--------------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceeccC
Confidence            5332   223334444443332              344455555555444542   2456677777777655444332 


Q ss_pred             -------ccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccccc
Q 044353          319 -------QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL  391 (596)
Q Consensus       319 -------~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  391 (596)
                             .+..+++|++|++++|++++. +  +++                                            +
T Consensus       306 ~~~L~~L~l~~~~~L~~L~L~~N~l~~l-~--l~~--------------------------------------------l  338 (457)
T 3bz5_A          306 AAGITELDLSQNPKLVYLYLNNTELTEL-D--VSH--------------------------------------------N  338 (457)
T ss_dssp             TCCCSCCCCTTCTTCCEEECTTCCCSCC-C--CTT--------------------------------------------C
T ss_pred             CCcceEechhhcccCCEEECCCCccccc-c--ccc--------------------------------------------C
Confidence                   244557888888888888752 2  322                                            5


Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS  461 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  461 (596)
                      ++|+.|++++|++++        ++.|+.|++++|.+.|.     +.+..|+.+++++|++++.+|..+.
T Consensus       339 ~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~  395 (457)
T 3bz5_A          339 TKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDLL  395 (457)
T ss_dssp             TTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTCB
T ss_pred             CcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhHh
Confidence            568999999999985        35678889999998865     3556788899999999998887553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=2.9e-32  Score=274.82  Aligned_cols=196  Identities=24%  Similarity=0.371  Sum_probs=107.6

Q ss_pred             cCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccc
Q 044353          223 WMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRL  302 (596)
Q Consensus       223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  302 (596)
                      +..+++|++|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|+.+++++|.+. .++.  +..+++|
T Consensus       151 ~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L  223 (347)
T 4fmz_A          151 LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT-DITP--VANMTRL  223 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GGGCTTC
T ss_pred             hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC-CCch--hhcCCcC
Confidence            3444444444444444432211  3444444555555544443222  444555555555555554 2222  1234555


Q ss_pred             cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353          303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG  382 (596)
Q Consensus       303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (596)
                      ++|++++|.+++..+  +..+++|++|++++|.+++.  ..+.                                     
T Consensus       224 ~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~-------------------------------------  262 (347)
T 4fmz_A          224 NSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVK-------------------------------------  262 (347)
T ss_dssp             CEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGT-------------------------------------
T ss_pred             CEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHh-------------------------------------
Confidence            555555555543222  55555666666666555421  1111                                     


Q ss_pred             ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                             .+++|+.|++++|.+++.  ..+..+++|+.|++++|++++..+..++.+++|++|++++|.+++..|  +..
T Consensus       263 -------~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~  331 (347)
T 4fmz_A          263 -------DLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LAS  331 (347)
T ss_dssp             -------TCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGG
T ss_pred             -------cCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhh
Confidence                   133456666666666532  346677778888888887777777777778888888888888776555  677


Q ss_pred             CCCCCEEecccccCc
Q 044353          463 LSFLNYLNLSNNNLN  477 (596)
Q Consensus       463 l~~L~~L~ls~N~l~  477 (596)
                      +++|+.|++++|+++
T Consensus       332 l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          332 LSKMDSADFANQVIK  346 (347)
T ss_dssp             CTTCSEESSSCC---
T ss_pred             hhccceeehhhhccc
Confidence            788888888888764

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.6e-32  Score=277.81  Aligned_cols=304  Identities=20%  Similarity=0.191  Sum_probs=247.2

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      |++++|.++...+..+..+++|++|++++|.+++..+.+|..+++|++|+|++|+++ .++...|.++++|++|++++|.
T Consensus        50 l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~  128 (390)
T 3o6n_A           50 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND  128 (390)
T ss_dssp             EEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCc
Confidence            678888888665666788999999999999998877778899999999999999988 4544478889999999999998


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      +....+..|..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++. +   ...+++|++|++++|.+++....
T Consensus       129 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~---~~~l~~L~~L~l~~n~l~~~~~~  204 (390)
T 3o6n_A          129 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D---LSLIPSLFHANVSYNLLSTLAIP  204 (390)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-C---GGGCTTCSEEECCSSCCSEEECC
T ss_pred             cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-c---cccccccceeecccccccccCCC
Confidence            8866666678889999999999998888788888899999999999988753 3   23468899999998887643211


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG  241 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  241 (596)
                      .             .-+.+++++|.+.....       ...++|+.|++++|.+++.  ..+..+++|++|++++|.+++
T Consensus       205 ~-------------~L~~L~l~~n~l~~~~~-------~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~  262 (390)
T 3o6n_A          205 I-------------AVEELDASHNSINVVRG-------PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEK  262 (390)
T ss_dssp             S-------------SCSEEECCSSCCCEEEC-------CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCE
T ss_pred             C-------------cceEEECCCCeeeeccc-------cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCC
Confidence            0             11778899988875422       1246899999999999864  568889999999999999998


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      ..|..|..+++|++|++++|.+++. +..+..+++|++|++++|++. .+|..+. .+++|++|++++|.++.. +  +.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~-~~~~~~~-~l~~L~~L~L~~N~i~~~-~--~~  336 (390)
T 3o6n_A          263 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LS  336 (390)
T ss_dssp             EESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CC
T ss_pred             cChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcce-ecCcccc-ccCcCCEEECCCCcccee-C--ch
Confidence            8888999999999999999999854 556678899999999999997 7777766 689999999999998854 3  67


Q ss_pred             CCCCCcEEeCCCCcCcc
Q 044353          322 RLGSLQILDVAYNSLSG  338 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~~  338 (596)
                      .+++|+.|++++|++..
T Consensus       337 ~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          337 THHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             TTCCCSEEECCSSCEEH
T ss_pred             hhccCCEEEcCCCCccc
Confidence            78899999999999874

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=9.7e-32  Score=270.98  Aligned_cols=306  Identities=23%  Similarity=0.339  Sum_probs=197.0

Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353           18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA   97 (596)
Q Consensus        18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   97 (596)
                      ..+++|++|++++|.++.. + .+..+++|++|++++|+++ .++.  +.++++|++|++++|.++..  +         
T Consensus        41 ~~l~~L~~L~l~~~~i~~~-~-~~~~~~~L~~L~l~~n~i~-~~~~--~~~l~~L~~L~L~~n~i~~~--~---------  104 (347)
T 4fmz_A           41 EELESITKLVVAGEKVASI-Q-GIEYLTNLEYLNLNGNQIT-DISP--LSNLVKLTNLYIGTNKITDI--S---------  104 (347)
T ss_dssp             HHHTTCSEEECCSSCCCCC-T-TGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--G---------
T ss_pred             hhcccccEEEEeCCccccc-h-hhhhcCCccEEEccCCccc-cchh--hhcCCcCCEEEccCCcccCc--h---------
Confidence            4555666666666665532 2 2555666666666666555 3332  55555555555555554431  2         


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353           98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG  177 (596)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  177 (596)
                                     .+..+++|++|++++|.+++ ++.  +..+++|++|++++|......                  
T Consensus       105 ---------------~~~~l~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~l~~n~~~~~~------------------  148 (347)
T 4fmz_A          105 ---------------ALQNLTNLRELYLNEDNISD-ISP--LANLTKMYSLNLGANHNLSDL------------------  148 (347)
T ss_dssp             ---------------GGTTCTTCSEEECTTSCCCC-CGG--GTTCTTCCEEECTTCTTCCCC------------------
T ss_pred             ---------------HHcCCCcCCEEECcCCcccC-chh--hccCCceeEEECCCCCCcccc------------------
Confidence                           34455555555555555542 222  233455555555555321100                  


Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN  257 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  257 (596)
                                         ..+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|+.|+
T Consensus       149 -------------------~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  205 (347)
T 4fmz_A          149 -------------------SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFT  205 (347)
T ss_dssp             -------------------GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred             -------------------cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceee
Confidence                               012235667777777776654433  6677777777777777764322  66777888888


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+.+..+  +..+++|++|++++|.++ .++.  ...+++|++|++++|.+++.  ..+..+++|++|++++|.++
T Consensus       206 l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~  278 (347)
T 4fmz_A          206 AYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS  278 (347)
T ss_dssp             CCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred             cccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC
Confidence            88887775543  677888888888888876 4444  33678888888888887743  45778888888888888877


Q ss_pred             ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353          338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG  417 (596)
Q Consensus       338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  417 (596)
                      +.  ..+.                                            .+++|+.|++++|.+++..+..+..+++
T Consensus       279 ~~--~~~~--------------------------------------------~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          279 DI--SVLN--------------------------------------------NLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             CC--GGGG--------------------------------------------GCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             CC--hhhc--------------------------------------------CCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            42  1222                                            2556888999999998888888999999


Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                      |++|+|++|++++..|  +..+++|++|++++|.++
T Consensus       313 L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            9999999999986555  888999999999999876

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.1e-31  Score=287.85  Aligned_cols=305  Identities=20%  Similarity=0.194  Sum_probs=256.0

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      +++++|.+....+..+..+++|++|++++|.+++..|.+|..+++|++|+|++|.+++ ++...|.++++|++|++++|.
T Consensus        56 l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~  134 (597)
T 3oja_B           56 VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERND  134 (597)
T ss_dssp             EEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             EEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCCEEEeeCCC
Confidence            6788888887777778899999999999999998888899999999999999999984 554488999999999999999


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPK  161 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  161 (596)
                      +....+..|..+++|++|++++|.+.+..+..++.+++|+.|++++|.+++ ++.   ..+++|+.|++++|.+++....
T Consensus       135 l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~---~~l~~L~~L~l~~n~l~~l~~~  210 (597)
T 3oja_B          135 LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VDL---SLIPSLFHANVSYNLLSTLAIP  210 (597)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CCG---GGCTTCSEEECCSSCCSEEECC
T ss_pred             CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cCh---hhhhhhhhhhcccCccccccCC
Confidence            987777778899999999999999998888889999999999999999875 332   3468899999999988653211


Q ss_pred             CCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccc
Q 044353          162 FDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTG  241 (596)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  241 (596)
                      .             ....+++++|.+.......       .++|+.|++++|.+++  +..+..+++|+.|++++|.+++
T Consensus       211 ~-------------~L~~L~ls~n~l~~~~~~~-------~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~  268 (597)
T 3oja_B          211 I-------------AVEELDASHNSINVVRGPV-------NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK  268 (597)
T ss_dssp             T-------------TCSEEECCSSCCCEEECSC-------CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE
T ss_pred             c-------------hhheeeccCCccccccccc-------CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC
Confidence            1             1177899999886543221       3689999999999986  4678899999999999999998


Q ss_pred             cCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          242 SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       242 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      ..|..|..+++|+.|+|++|.+.++ |..+..+++|+.|++++|.+. .+|..+. .+++|++|++++|.+++. +  +.
T Consensus       269 ~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~-~l~~L~~L~L~~N~l~~~-~--~~  342 (597)
T 3oja_B          269 IMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLL-HVERNQP-QFDRLENLYLDHNSIVTL-K--LS  342 (597)
T ss_dssp             EESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCC-CCGGGHH-HHTTCSEEECCSSCCCCC-C--CC
T ss_pred             CCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCC-ccCcccc-cCCCCCEEECCCCCCCCc-C--hh
Confidence            8899999999999999999999964 556678999999999999998 7888776 799999999999998854 3  67


Q ss_pred             CCCCCcEEeCCCCcCccc
Q 044353          322 RLGSLQILDVAYNSLSGT  339 (596)
Q Consensus       322 ~l~~L~~L~l~~n~l~~~  339 (596)
                      .+++|+.|++++|++.+.
T Consensus       343 ~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          343 THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             TTCCCSEEECCSSCEEHH
T ss_pred             hcCCCCEEEeeCCCCCCh
Confidence            788999999999998753

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=1.1e-31  Score=265.65  Aligned_cols=250  Identities=26%  Similarity=0.418  Sum_probs=219.9

Q ss_pred             ceEEcccCcccc--ccccccccCCCCCCCccEEeCcC-CcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCc
Q 044353          178 SIFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLM  254 (596)
Q Consensus       178 ~~l~ls~n~l~~--~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  254 (596)
                      +.++++++.+.+  .++.    .+..+++|++|++++ |.+.+.+|..|..+++|++|++++|.+++..|..|..+++|+
T Consensus        53 ~~L~L~~~~l~~~~~~~~----~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPS----SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             EEEEEECCCCSSCEECCG----GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEECCCCCccCCcccCh----hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            334444444444  3333    334489999999995 999989999999999999999999999999999999999999


Q ss_pred             EEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcc-cccEEEccCCcCcCcCCcccCCCCCCcEEeCCC
Q 044353          255 SLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS-RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAY  333 (596)
Q Consensus       255 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  333 (596)
                      +|++++|.+.+..|..+..+++|++|++++|.+++.+|..+. .++ +|++|++++|.+++..|..+..++ |++|++++
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            999999999999999999999999999999999989998887 576 999999999999989999999887 99999999


Q ss_pred             CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcccc
Q 044353          334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVT  413 (596)
Q Consensus       334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~  413 (596)
                      |.+++..|..+..                                            +++|+.|++++|.+++.++. +.
T Consensus       207 N~l~~~~~~~~~~--------------------------------------------l~~L~~L~L~~N~l~~~~~~-~~  241 (313)
T 1ogq_A          207 NMLEGDASVLFGS--------------------------------------------DKNTQKIHLAKNSLAFDLGK-VG  241 (313)
T ss_dssp             SEEEECCGGGCCT--------------------------------------------TSCCSEEECCSSEECCBGGG-CC
T ss_pred             CcccCcCCHHHhc--------------------------------------------CCCCCEEECCCCceeeecCc-cc
Confidence            9999877776655                                            44589999999999866665 88


Q ss_pred             CcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          414 NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       414 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      .+++|++|+|++|++++.+|..+..+++|+.|++++|++++.+|.. ..+++|+.+++++|+..|.
T Consensus       242 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             CCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccC
Confidence            8999999999999999999999999999999999999999998886 8899999999999995544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=1.2e-34  Score=304.18  Aligned_cols=383  Identities=17%  Similarity=0.106  Sum_probs=186.6

Q ss_pred             CCCEEECcCCcccccCCcc-CcCCCCCCEEECcCCcCccc----cChhhhhcCCCCcEEEccCCeeeeEeCCCC-CCCC-
Q 044353           22 TLRALDLSNNTVNGPIPLS-LGQIANLEYLDLSNNKLNGT----VSEIHFLNLTQLLVFRAHGNSLVFKINPNW-VPPF-   94 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~~~~~-~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~-   94 (596)
                      +|++||+++|.+++..... +..+++|++|+|++|++++.    ++. .+..+++|++|++++|.+.......+ ..+. 
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~-~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHH-HHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4455555555554332221 44455555555555554421    122 34445555555555555432221111 1122 


Q ss_pred             ---CccEEEccCCCCCC----CcchhhcCCCCCcEEEcccCcCcccCChhHHhc----CCCCcEEEcccccccccCCCCC
Q 044353           95 ---QLAFLELRSCHLGP----RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS----IFQYDYLNVSGNQIYGGVPKFD  163 (596)
Q Consensus        95 ---~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~----l~~L~~L~l~~n~l~~~~~~~~  163 (596)
                         +|++|++++|.++.    .++..+..+++|++|++++|.+++..+..+...    .++|++|++++|++++.     
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~-----  157 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAA-----  157 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG-----
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHH-----
Confidence               46666666665553    335556666666666666666654434333322    23455555555554321     


Q ss_pred             CCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccC-----CCCCCcEEEccccc
Q 044353          164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM-----NWPRLRMLNLGNNN  238 (596)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~  238 (596)
                                                 ....++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.
T Consensus       158 ---------------------------~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  210 (461)
T 1z7x_W          158 ---------------------------SCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  210 (461)
T ss_dssp             ---------------------------GHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             ---------------------------HHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCC
Confidence                                       1111112222245566666666555433222221     23456666666665


Q ss_pred             cccc----CCccCcCCCCCcEEEccCCcccccC-----ChhhcCCCCCCEEEccCCccccc----CchhhhhhcccccEE
Q 044353          239 FTGS----LPMSIGALNSLMSLNLRNNRLSGII-----PTSFRNLSILKALDMGENELVGN----IPTWIGETFSRLMIL  305 (596)
Q Consensus       239 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L  305 (596)
                      ++..    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+. .+++|++|
T Consensus       211 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~-~~~~L~~L  289 (461)
T 1z7x_W          211 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLR-AKESLKEL  289 (461)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHH-HCTTCCEE
T ss_pred             CcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHh-hCCCcceE
Confidence            5532    3444455566666666666555332     11222455666666666655422    233322 35566666


Q ss_pred             EccCCcCcCcCCcccC-----CCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEe
Q 044353          306 NLRSNKFHGDFPIQLC-----RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVT  380 (596)
Q Consensus       306 ~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~  380 (596)
                      ++++|.+++..+..+.     ..++|++|++++|.+++.....+..                                  
T Consensus       290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~----------------------------------  335 (461)
T 1z7x_W          290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS----------------------------------  335 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH----------------------------------
T ss_pred             ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHH----------------------------------
Confidence            6666655432222211     2246666666666655321111100                                  


Q ss_pred             ccceeecccccccccEEEccCCcccccCCccccC-----cccCCeeeccCccCcc----cCCccccCCCCCCEEECCCCc
Q 044353          381 KGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTN-----LQGLQSLNLSHNLFTG----RIPDNIGVMRSIESLDFSANQ  451 (596)
Q Consensus       381 ~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-----l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~N~  451 (596)
                            ....+++|+.|++++|.+++..+..+..     .++|++|+|++|++++    .++..+..+++|++|++++|+
T Consensus       336 ------~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~  409 (461)
T 1z7x_W          336 ------VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC  409 (461)
T ss_dssp             ------HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred             ------HHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence                  0111344666666666665443333321     4567777777777664    556666667777777777777


Q ss_pred             CcccCCcccc-----CCCCCCEEecccccCcc
Q 044353          452 LSGQIPQSMS-----NLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       452 l~~~~~~~~~-----~l~~L~~L~ls~N~l~~  478 (596)
                      +++.....+.     ...+|+.|++.++.+..
T Consensus       410 i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~  441 (461)
T 1z7x_W          410 LGDAGILQLVESVRQPGCLLEQLVLYDIYWSE  441 (461)
T ss_dssp             CCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence            7643221111     23456777766666543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=3.1e-30  Score=258.08  Aligned_cols=82  Identities=16%  Similarity=0.121  Sum_probs=53.7

Q ss_pred             CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEc
Q 044353           46 NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDI  125 (596)
Q Consensus        46 ~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l  125 (596)
                      +++.++++++.++ .+|. .+  .++|++|++++|.+....+..|..+++|++|++++|.+.+..+..++++++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~-~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPK-EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCS-CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCC-CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            5777777777776 5654 22  246677777777666665566666666666666666666555666666666666666


Q ss_pred             ccCcCc
Q 044353          126 SSTRIS  131 (596)
Q Consensus       126 ~~n~i~  131 (596)
                      ++|.++
T Consensus       110 ~~n~l~  115 (332)
T 2ft3_A          110 SKNHLV  115 (332)
T ss_dssp             CSSCCC
T ss_pred             CCCcCC
Confidence            666665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=9.8e-30  Score=254.27  Aligned_cols=198  Identities=19%  Similarity=0.269  Sum_probs=97.9

Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccc--cCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEE
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSG--IIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL  305 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  305 (596)
                      +|++|++++|.+++..+..|.++++|+.|++++|.+..  ..+..+..+++|+.|++++|.+. .+|....   ++|++|
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---~~L~~L  197 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---PSLTEL  197 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---TTCSEE
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---ccCCEE
Confidence            44444444444443333344444444444444444432  33444445555555555555554 3443322   455555


Q ss_pred             EccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecccee
Q 044353          306 NLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLV  385 (596)
Q Consensus       306 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (596)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..                                       
T Consensus       198 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~---------------------------------------  238 (330)
T 1xku_A          198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN---------------------------------------  238 (330)
T ss_dssp             ECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG---------------------------------------
T ss_pred             ECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC---------------------------------------
Confidence            55555555444455555555555555555555433333322                                       


Q ss_pred             ecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC------CCCCCEEECCCCcCcc--cCC
Q 044353          386 EYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV------MRSIESLDFSANQLSG--QIP  457 (596)
Q Consensus       386 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~------l~~L~~L~Ls~N~l~~--~~~  457 (596)
                           +++|+.|++++|.++ .+|..+..+++|++|+|++|++++..+..|..      .+.|+.|++++|.+..  +.|
T Consensus       239 -----l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~  312 (330)
T 1xku_A          239 -----TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQP  312 (330)
T ss_dssp             -----STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCG
T ss_pred             -----CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCc
Confidence                 223555555555555 45555555666666666666665444444432      2455566666665543  344


Q ss_pred             ccccCCCCCCEEecccc
Q 044353          458 QSMSNLSFLNYLNLSNN  474 (596)
Q Consensus       458 ~~~~~l~~L~~L~ls~N  474 (596)
                      ..|..++.++.+++++|
T Consensus       313 ~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          313 STFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             GGGTTCCCGGGEEC---
T ss_pred             cccccccceeEEEeccc
Confidence            55555666666666655

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.1e-34  Score=301.02  Aligned_cols=388  Identities=20%  Similarity=0.156  Sum_probs=289.0

Q ss_pred             CeeecCCCccccCC-ccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCccccChhhhhcCC----C
Q 044353            1 SLFLRRSQFYGHLT-NQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLT----Q   71 (596)
Q Consensus         1 ~l~L~~n~l~~~~~-~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~----~   71 (596)
                      +|||++|+++.... ..+..+++|++|++++|.+++.    ++..+..+++|++|+|++|.+.+......+..++    +
T Consensus         7 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~   86 (461)
T 1z7x_W            7 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK   86 (461)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCC
T ss_pred             ehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCc
Confidence            47999999986543 3478999999999999999853    4677888999999999999997544433445566    7


Q ss_pred             CcEEEccCCeeee----EeCCCCCCCCCccEEEccCCCCCCCcchhhc-----CCCCCcEEEcccCcCcccCChhH---H
Q 044353           72 LLVFRAHGNSLVF----KINPNWVPPFQLAFLELRSCHLGPRFPLWLQ-----SQKKLYYLDISSTRISAKIPRGF---W  139 (596)
Q Consensus        72 L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~-----~l~~L~~L~l~~n~i~~~~~~~~---~  139 (596)
                      |++|++++|.+..    ..+..+..+++|++|++++|.+....+..+.     ..++|++|++++|.+++.....+   +
T Consensus        87 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l  166 (461)
T 1z7x_W           87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL  166 (461)
T ss_dssp             CCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH
T ss_pred             eeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH
Confidence            9999999999874    4467788999999999999998755444333     35689999999999986543332   3


Q ss_pred             hcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCC-CCCCccEEeCcCCcCCCC
Q 044353          140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN-FSKNIEFLKLSKNHFSED  218 (596)
Q Consensus       140 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~  218 (596)
                      ..+++|++|++++|.+++....                                .+...+. ..++|++|++++|.+++.
T Consensus       167 ~~~~~L~~L~L~~n~i~~~~~~--------------------------------~l~~~l~~~~~~L~~L~L~~n~l~~~  214 (461)
T 1z7x_W          167 RAKPDFKELTVSNNDINEAGVR--------------------------------VLCQGLKDSPCQLEALKLESCGVTSD  214 (461)
T ss_dssp             HHCTTCCEEECCSSBCHHHHHH--------------------------------HHHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred             hhCCCCCEEECcCCCcchHHHH--------------------------------HHHHHHhcCCCCceEEEccCCCCcHH
Confidence            4468999999999987532111                                1111111 145899999999998764


Q ss_pred             ----CCcccCCCCCCcEEEcccccccccC-----CccCcCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEccCC
Q 044353          219 ----IPDCWMNWPRLRMLNLGNNNFTGSL-----PMSIGALNSLMSLNLRNNRLSGI----IPTSFRNLSILKALDMGEN  285 (596)
Q Consensus       219 ----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n  285 (596)
                          ++..+..+++|++|++++|.+++..     +..+..+++|++|++++|.+++.    .+..+..+++|++|++++|
T Consensus       215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n  294 (461)
T 1z7x_W          215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN  294 (461)
T ss_dssp             HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred             HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence                3556778899999999999887432     23334688999999999999864    4667778999999999999


Q ss_pred             cccccCchhhhhh----cccccEEEccCCcCcCc----CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          286 ELVGNIPTWIGET----FSRLMILNLRSNKFHGD----FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       286 ~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      .+.+..+..+...    .++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+...-         
T Consensus       295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---------  365 (461)
T 1z7x_W          295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL---------  365 (461)
T ss_dssp             CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH---------
T ss_pred             CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH---------
Confidence            9875444444422    36999999999998854    455677789999999999998865444332210         


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc----cCCccccCcccCCeeeccCccCcccCC
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGRIP  433 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~  433 (596)
                                                    ....++|+.|++++|.+++    .++..+..+++|++|+|++|++++...
T Consensus       366 ------------------------------~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~  415 (461)
T 1z7x_W          366 ------------------------------GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  415 (461)
T ss_dssp             ------------------------------TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ------------------------------cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHH
Confidence                                          0014569999999999986    678888899999999999999875432


Q ss_pred             cccc-----CCCCCCEEECCCCcCcccCCcc
Q 044353          434 DNIG-----VMRSIESLDFSANQLSGQIPQS  459 (596)
Q Consensus       434 ~~~~-----~l~~L~~L~Ls~N~l~~~~~~~  459 (596)
                      ..+.     ...+|+.|++.++......++.
T Consensus       416 ~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~  446 (461)
T 1z7x_W          416 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDR  446 (461)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCHHHHHH
T ss_pred             HHHHHHhccCCcchhheeecccccCHHHHHH
Confidence            2221     2457999999988887544443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2e-29  Score=252.00  Aligned_cols=291  Identities=21%  Similarity=0.274  Sum_probs=220.4

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEE
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLE  100 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  100 (596)
                      .+++.++++++.++ .+|..+.  ++|++|++++|+++ .++...|.++++|++|++++|.++...+..|..+++|++|+
T Consensus        31 c~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           31 CHLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             EETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCC-EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            37889999998888 4565543  68899999999988 55555788999999999999999888788899999999999


Q ss_pred             ccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceE
Q 044353          101 LRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF  180 (596)
Q Consensus       101 L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l  180 (596)
                      +++|+++. +|..+.  ++|+.|++++|.+++ ++...+..+++|++|++++|.+.....                    
T Consensus       107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~--------------------  162 (330)
T 1xku_A          107 LSKNQLKE-LPEKMP--KTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGI--------------------  162 (330)
T ss_dssp             CCSSCCSB-CCSSCC--TTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGGB--------------------
T ss_pred             CCCCcCCc-cChhhc--ccccEEECCCCcccc-cCHhHhcCCccccEEECCCCcCCccCc--------------------
Confidence            99998873 444433  789999999999874 555555668899999999988742100                    


Q ss_pred             EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccC
Q 044353          181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN  260 (596)
Q Consensus       181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~  260 (596)
                                    ....+..+++|+.|++++|.++. +|..+.  ++|++|++++|.+++..+..|..+++|++|++++
T Consensus       163 --------------~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  225 (330)
T 1xku_A          163 --------------ENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF  225 (330)
T ss_dssp             --------------CTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCS
T ss_pred             --------------ChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCC
Confidence                          01122336788888888888875 343332  6888888888888877778888888888888888


Q ss_pred             CcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC------CCCCcEEeCCCC
Q 044353          261 NRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR------LGSLQILDVAYN  334 (596)
Q Consensus       261 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~n  334 (596)
                      |.+.+..+..+..+++|++|++++|++. .+|.++. .+++|++|++++|.+++..+..|..      .+.++.+++++|
T Consensus       226 n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N  303 (330)
T 1xku_A          226 NSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN  303 (330)
T ss_dssp             SCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS
T ss_pred             CcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc-cCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecC
Confidence            8888777778888888888888888887 7777765 6888888888888888665555543      367888888888


Q ss_pred             cCcc--cCCccccccccCcccCCCCC
Q 044353          335 SLSG--TIPRCINNFSAMATTDSSDP  358 (596)
Q Consensus       335 ~l~~--~~~~~~~~l~~L~~l~l~~~  358 (596)
                      ++..  ..|..+..+..++.++++++
T Consensus       304 ~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          304 PVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             SSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cccccccCccccccccceeEEEeccc
Confidence            8753  45677777888887777653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=8.7e-30  Score=254.80  Aligned_cols=287  Identities=20%  Similarity=0.279  Sum_probs=210.8

Q ss_pred             CCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353           22 TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL  101 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  101 (596)
                      +++.++++++.++ .+|..+.  ++|++|++++|.++ .++...|.++++|++|++++|.++...+..|..+++|++|++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  109 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI  109 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred             cCCEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence            7999999999998 5566553  78999999999998 555458999999999999999999888889999999999999


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccc--cCCCCCCCCCCccccCCCCCce
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYG--GVPKFDSPSVPLITTPSLLGSI  179 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~~~~~~~~~~~~~~  179 (596)
                      ++|.+.. +|..+.  ++|++|++++|.+++ ++...+..+++|++|++++|.++.  ..+..                 
T Consensus       110 ~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-----------------  168 (332)
T 2ft3_A          110 SKNHLVE-IPPNLP--SSLVELRIHDNRIRK-VPKGVFSGLRNMNCIEMGGNPLENSGFEPGA-----------------  168 (332)
T ss_dssp             CSSCCCS-CCSSCC--TTCCEEECCSSCCCC-CCSGGGSSCSSCCEEECCSCCCBGGGSCTTS-----------------
T ss_pred             CCCcCCc-cCcccc--ccCCEEECCCCccCc-cCHhHhCCCccCCEEECCCCccccCCCCccc-----------------
Confidence            9999984 444443  899999999999984 565555678999999999998853  21211                 


Q ss_pred             EEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEcc
Q 044353          180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR  259 (596)
Q Consensus       180 l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  259 (596)
                                         +..+ +|+.|++++|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|+.|+++
T Consensus       169 -------------------~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~  225 (332)
T 2ft3_A          169 -------------------FDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG  225 (332)
T ss_dssp             -------------------SCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC
T ss_pred             -------------------ccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECC
Confidence                               1113 66677777777765 333332  567777777777776666677777777777777


Q ss_pred             CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC------CCCCcEEeCCC
Q 044353          260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR------LGSLQILDVAY  333 (596)
Q Consensus       260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~l~~  333 (596)
                      +|.+.+..+..+..+++|+.|++++|++. .+|..+. .+++|++|++++|.+++..+..+..      .++|+.|++++
T Consensus       226 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~  303 (332)
T 2ft3_A          226 HNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLP-DLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN  303 (332)
T ss_dssp             SSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGG-GCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCS
T ss_pred             CCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhh-cCccCCEEECCCCCCCccChhHccccccccccccccceEeec
Confidence            77777666667777777777777777776 6666655 5777777777777777555555543      35677777777


Q ss_pred             CcCc--ccCCccccccccCcccCCCCC
Q 044353          334 NSLS--GTIPRCINNFSAMATTDSSDP  358 (596)
Q Consensus       334 n~l~--~~~~~~~~~l~~L~~l~l~~~  358 (596)
                      |++.  +..|..+..++.++.++++++
T Consensus       304 N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          304 NPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             SSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             CcccccccCcccccccchhhhhhcccc
Confidence            7776  455667777777777766543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.96  E-value=7.9e-29  Score=244.97  Aligned_cols=237  Identities=23%  Similarity=0.270  Sum_probs=203.0

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc--CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS--LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      .+++++|++++|.+++..+..|..+++|++|++++|.++..  .+..+..+++|++|++++|.+.. .+..+..+++|++
T Consensus        27 ~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~  105 (306)
T 2z66_A           27 PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH  105 (306)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred             CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence            36899999999999876666789999999999999998732  35667788999999999999984 5566889999999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcc-cCCccccccccCcccCCCCC
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSG-TIPRCINNFSAMATTDSSDP  358 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~l~l~~~  358 (596)
                      |++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ ..|..+..            
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~------------  173 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE------------  173 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTT------------
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhh------------
Confidence            99999999843332444478999999999999988888889999999999999999875 45555544            


Q ss_pred             CCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC
Q 044353          359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  438 (596)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  438 (596)
                                                      +++|+.|++++|.+++..|..|..+++|++|+|++|++++..+..+..
T Consensus       174 --------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          174 --------------------------------LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             --------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             --------------------------------CcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence                                            455899999999999888999999999999999999999877778999


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCC-CCCEEecccccCccCCCCC
Q 044353          439 MRSIESLDFSANQLSGQIPQSMSNLS-FLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       439 l~~L~~L~Ls~N~l~~~~~~~~~~l~-~L~~L~ls~N~l~~~~~~~  483 (596)
                      +++|+.|++++|++++..|..+..++ +|+.|++++|+++|.++..
T Consensus       222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~  267 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ  267 (306)
T ss_dssp             CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred             cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence            99999999999999999999999985 9999999999999987643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.96  E-value=7e-28  Score=251.50  Aligned_cols=235  Identities=23%  Similarity=0.270  Sum_probs=209.5

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      .++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++.+.+..|..+++|++|+
T Consensus        74 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           74 PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            36899999999999998899999999999999999999988889999999999999999999988888899999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS  360 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~  360 (596)
                      +++|.+. .++...+..+++|++|++++| .+....+..+..+++|++|++++|.+++ +|. +.               
T Consensus       154 L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~---------------  215 (452)
T 3zyi_A          154 LRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPN-LT---------------  215 (452)
T ss_dssp             CCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCC-CT---------------
T ss_pred             CCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-ccc-cc---------------
Confidence            9999998 677766668999999999985 5554445578899999999999999883 331 21               


Q ss_pred             CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353          361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  440 (596)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  440 (596)
                                                   .+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..++
T Consensus       216 -----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          216 -----------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             -----------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             -----------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence                                         256699999999999988899999999999999999999989999999999


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       441 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      +|+.|+|++|+++...+..|..+++|+.|++++|++.|.|...
T Consensus       267 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~~  309 (452)
T 3zyi_A          267 SLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDIL  309 (452)
T ss_dssp             TCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred             CCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCch
Confidence            9999999999999888888999999999999999999998754

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.96  E-value=7.7e-28  Score=250.27  Aligned_cols=234  Identities=23%  Similarity=0.255  Sum_probs=207.4

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      ++++.|++++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|+|++|.++.+.+..|..+++|++|++
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  143 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL  143 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence            58999999999999888889999999999999999999888889999999999999999999888888999999999999


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCC-cCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSN-KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG  361 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~  361 (596)
                      ++|.+. .++...+..+++|++|++++| .+....+..|..+++|++|++++|.++ .+|. +.                
T Consensus       144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~----------------  204 (440)
T 3zyj_A          144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LT----------------  204 (440)
T ss_dssp             CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCC-CT----------------
T ss_pred             CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccc-cC----------------
Confidence            999997 666666668999999999985 455444557889999999999999987 3442 11                


Q ss_pred             ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353          362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  441 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  441 (596)
                                                  .+++|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++
T Consensus       205 ----------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          205 ----------------------------PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             ----------------------------TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             ----------------------------CCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence                                        2566999999999999888999999999999999999999999999999999


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      |+.|+|++|+++...+..|..+++|+.|++++|++.|.|...
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l~  298 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDIL  298 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTTH
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCch
Confidence            999999999999888888999999999999999999998754

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.96  E-value=5.1e-28  Score=236.51  Aligned_cols=250  Identities=20%  Similarity=0.205  Sum_probs=191.4

Q ss_pred             cEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCC
Q 044353          206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN  285 (596)
Q Consensus       206 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  285 (596)
                      +.++.+++.++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence            567777777764 34332  357788888888887666677778888888888888888777777888888888888888


Q ss_pred             c-ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353          286 E-LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY  364 (596)
Q Consensus       286 ~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  364 (596)
                      . +. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..                  
T Consensus        91 ~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------  151 (285)
T 1ozn_A           91 AQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD------------------  151 (285)
T ss_dssp             TTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             CCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc------------------
Confidence            6 55 553333336788888888888888766777888888888888888887544444443                  


Q ss_pred             cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353          365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  444 (596)
                                                +++|+.|++++|.+++..+..|..+++|++|+|++|++++..|..+..+++|+.
T Consensus       152 --------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  205 (285)
T 1ozn_A          152 --------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT  205 (285)
T ss_dssp             --------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             --------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccE
Confidence                                      444788888888888666677889999999999999999888999999999999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      |++++|.+++..+..+..+++|+.|++++|++.|.++..+.+..++......+. .|..|
T Consensus       206 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          206 LYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             EECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             eeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence            999999999877778999999999999999999988765555555555555555 45444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.6e-28  Score=247.77  Aligned_cols=237  Identities=17%  Similarity=0.187  Sum_probs=164.2

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKAL  280 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L  280 (596)
                      +++|+.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+ ..|..+++|++|
T Consensus        75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L  154 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL  154 (353)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEE
Confidence            5677777777777776666667777777777777777775444446677777777777777775444 466677777777


Q ss_pred             EccCCc-ccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCC
Q 044353          281 DMGENE-LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN  359 (596)
Q Consensus       281 ~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~  359 (596)
                      ++++|. +. .++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+. .+|..+.              
T Consensus       155 ~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~--------------  218 (353)
T 2z80_A          155 RVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFV--------------  218 (353)
T ss_dssp             EEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHH--------------
T ss_pred             ECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhh--------------
Confidence            777773 43 444333336777777777777777666777777777777777777765 2222211              


Q ss_pred             CCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccc---cCcccCCeeeccCccCcc----cC
Q 044353          360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV---TNLQGLQSLNLSHNLFTG----RI  432 (596)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~----~~  432 (596)
                                                   ..+++|+.|++++|.+++..+..+   .....++.++|+++.+++    .+
T Consensus       219 -----------------------------~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          219 -----------------------------DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             -----------------------------HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             -----------------------------hhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence                                         124557888888888876544433   235667777888777765    46


Q ss_pred             CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      |+.+..+++|++|++++|+++.+.+..|..+++|++|++++|++.|.+|..
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~~l  320 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  320 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred             HHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcCCCc
Confidence            778889999999999999999554455789999999999999999988743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.4e-27  Score=240.82  Aligned_cols=284  Identities=16%  Similarity=0.200  Sum_probs=178.6

Q ss_pred             CCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcE
Q 044353           43 QIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYY  122 (596)
Q Consensus        43 ~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  122 (596)
                      .|+.....+.+++.++ .+|. .+.  ++|++|++++|.++...+..+..+++|++|++++|.+++..+..++++++|++
T Consensus        29 ~C~~~~~c~~~~~~l~-~iP~-~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           29 SCDRNGICKGSSGSLN-SIPS-GLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             EECTTSEEECCSTTCS-SCCT-TCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCCeEeeCCCCCcc-cccc-ccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            3444555666666665 5554 222  35666666666666555556666666666666666666555666666777777


Q ss_pred             EEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCC
Q 044353          123 LDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFS  202 (596)
Q Consensus       123 L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~  202 (596)
                      |++++|.++ .++...+..+++|++|++++                                                  
T Consensus       105 L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~--------------------------------------------------  133 (353)
T 2z80_A          105 LDLSYNYLS-NLSSSWFKPLSSLTFLNLLG--------------------------------------------------  133 (353)
T ss_dssp             EECCSSCCS-SCCHHHHTTCTTCSEEECTT--------------------------------------------------
T ss_pred             EECCCCcCC-cCCHhHhCCCccCCEEECCC--------------------------------------------------
Confidence            777777666 34444333344444444444                                                  


Q ss_pred             CCccEEeCcCCcCCCCCC-cccCCCCCCcEEEcccc-cccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353          203 KNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGNN-NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  280 (596)
                                |.+.+..+ ..+..+++|++|++++| .+....+..|.++++|++|++++|.+.+..|..+..+++|++|
T Consensus       134 ----------n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  203 (353)
T 2z80_A          134 ----------NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL  203 (353)
T ss_dssp             ----------CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEE
T ss_pred             ----------CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCee
Confidence                      44433222 34566667777777766 3555556667777777777777777777777777777888888


Q ss_pred             EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353          281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS  360 (596)
Q Consensus       281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~  360 (596)
                      ++++|.+. .+|...+..+++|++|++++|.+++..+..+....                                    
T Consensus       204 ~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~------------------------------------  246 (353)
T 2z80_A          204 ILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE------------------------------------  246 (353)
T ss_dssp             EEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------------------------------------------
T ss_pred             cCCCCccc-cchhhhhhhcccccEEECCCCcccccccccccccc------------------------------------
Confidence            88888775 66666665677888888888877754332221100                                    


Q ss_pred             CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc----cCCccccCcccCCeeeccCccCcccCCccc
Q 044353          361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG----EIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  436 (596)
                                                   ....++.++++++.+++    .+|..+..+++|++|+|++|+++...+..|
T Consensus       247 -----------------------------~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~  297 (353)
T 2z80_A          247 -----------------------------TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF  297 (353)
T ss_dssp             -----------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             -----------------------------ccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHH
Confidence                                         01113334444443332    467788899999999999999994444446


Q ss_pred             cCCCCCCEEECCCCcCcccCC
Q 044353          437 GVMRSIESLDFSANQLSGQIP  457 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N~l~~~~~  457 (596)
                      ..+++|++|++++|.+.+..|
T Consensus       298 ~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          298 DRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             TTCTTCCEEECCSSCBCCCHH
T ss_pred             hcCCCCCEEEeeCCCccCcCC
Confidence            899999999999999986544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.6e-27  Score=235.66  Aligned_cols=227  Identities=18%  Similarity=0.256  Sum_probs=202.2

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      .+.++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+. ..|..+..+++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence            468999999999998 56777888999999999999999 88999999999999999999999 6688899999999999


Q ss_pred             ccCCcccccCchhhh--------hhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCccc
Q 044353          282 MGENELVGNIPTWIG--------ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATT  353 (596)
Q Consensus       282 L~~n~l~~~~~~~~~--------~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  353 (596)
                      +++|.+.+.+|..+.        ..+++|++|++++|.++ .+|..+..+++|++|++++|.++ .+|..+..       
T Consensus       157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~-------  227 (328)
T 4fcg_A          157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHH-------  227 (328)
T ss_dssp             EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGG-------
T ss_pred             CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhcc-------
Confidence            999888888888764        24889999999999998 78888999999999999999998 45555554       


Q ss_pred             CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCC
Q 044353          354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP  433 (596)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~  433 (596)
                                                           +++|++|++++|.+.+.+|..+..+++|++|+|++|++.+.+|
T Consensus       228 -------------------------------------l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p  270 (328)
T 4fcg_A          228 -------------------------------------LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP  270 (328)
T ss_dssp             -------------------------------------CTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCC
T ss_pred             -------------------------------------CCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcc
Confidence                                                 4458899999999998999999999999999999999988999


Q ss_pred             ccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353          434 DNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       434 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  477 (596)
                      ..++.+++|++|+|++|.+.+.+|..+..+++|+.+++..+.+.
T Consensus       271 ~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~  314 (328)
T 4fcg_A          271 LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA  314 (328)
T ss_dssp             TTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred             hhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence            99999999999999999999999999999999999999987664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=7.6e-30  Score=276.42  Aligned_cols=414  Identities=12%  Similarity=0.036  Sum_probs=221.8

Q ss_pred             CCccccCCCCCCEEECcCCccc---ccCCccCc------------CCCCCCEEECcCCcCccccChhhhhc-CC-CCcEE
Q 044353           13 LTNQLGRFKTLRALDLSNNTVN---GPIPLSLG------------QIANLEYLDLSNNKLNGTVSEIHFLN-LT-QLLVF   75 (596)
Q Consensus        13 ~~~~l~~l~~L~~L~ls~n~i~---~~~~~~~~------------~l~~L~~L~Ls~n~i~~~~~~~~~~~-l~-~L~~L   75 (596)
                      .+..+.++++|++|+++++..-   +.+|..++            .+++|++|+|++|.+++.... .+.. ++ +|++|
T Consensus        65 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~-~l~~~~~~~L~~L  143 (592)
T 3ogk_B           65 PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLD-RLAKARADDLETL  143 (592)
T ss_dssp             HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHHGGGCCEE
T ss_pred             hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHH-HHHHhccccCcEE
Confidence            3445678889999999875321   22333333            688999999999988754443 4444 34 49999


Q ss_pred             EccCCee-eeE-eCCCCCCCCCccEEEccCCCCCCC----cchhhcCCCCCcEEEcccCcCcccCC---hhHHhcCCCCc
Q 044353           76 RAHGNSL-VFK-INPNWVPPFQLAFLELRSCHLGPR----FPLWLQSQKKLYYLDISSTRISAKIP---RGFWNSIFQYD  146 (596)
Q Consensus        76 ~L~~n~l-~~~-~~~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~---~~~~~~l~~L~  146 (596)
                      ++++|.. ... .......+++|++|++++|.+.+.    ++.....+++|+.|++++|.+++...   ..+...+++|+
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~  223 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV  223 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCC
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCc
Confidence            9998862 111 111223678999999999987655    34456678999999999998863222   22344578899


Q ss_pred             EEEcccccccccCCCCCCCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCC
Q 044353          147 YLNVSGNQIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN  225 (596)
Q Consensus       147 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  225 (596)
                      .|++++|.+.+. +..+..         .+. +.++++...... ........+..+++|+.|+++++.. +..|..+..
T Consensus       224 ~L~L~~~~~~~l-~~~~~~---------~~~L~~L~l~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~  291 (592)
T 3ogk_B          224 SVKVGDFEILEL-VGFFKA---------AANLEEFCGGSLNEDI-GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPF  291 (592)
T ss_dssp             EEECSSCBGGGG-HHHHHH---------CTTCCEEEECBCCCCT-TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGG
T ss_pred             EEeccCccHHHH-HHHHhh---------hhHHHhhccccccccc-chHHHHHHhhccccccccCccccch-hHHHHHHhh
Confidence            999988876431 110000         000 223332211000 0011112223344444444444322 123333444


Q ss_pred             CCCCcEEEcccccccccCC-ccCcCCCCCcEEEccCCccc-ccCChhhcCCCCCCEEEccC-----------CcccccCc
Q 044353          226 WPRLRMLNLGNNNFTGSLP-MSIGALNSLMSLNLRNNRLS-GIIPTSFRNLSILKALDMGE-----------NELVGNIP  292 (596)
Q Consensus       226 l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~-----------n~l~~~~~  292 (596)
                      +++|++|++++|.+++... ..+..+++|++|+++ +.+. ...+..+..+++|++|++++           +.+++...
T Consensus       292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            4445555555444332111 123344445555444 2222 11222223444455555541           23322212


Q ss_pred             hhhhhhcccccEEEccCCcCcCcCCcccCC-CCCCcEEeCC----CCcCcccCCccccccccCcccCCCCCCCCccccCC
Q 044353          293 TWIGETFSRLMILNLRSNKFHGDFPIQLCR-LGSLQILDVA----YNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASS  367 (596)
Q Consensus       293 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~----~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  367 (596)
                      ..+...+++|++|+++.+.+++..+..+.. +++|+.|+++    .|.+++. |..                        
T Consensus       371 ~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~------------------------  425 (592)
T 3ogk_B          371 IALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLD------------------------  425 (592)
T ss_dssp             HHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCH------------------------
T ss_pred             HHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHH------------------------
Confidence            222223444555554444444333323322 4444444443    2233211 000                        


Q ss_pred             CCCceeeeeEEEeccceeecccccccccEEEccCCc--ccccCCcccc-CcccCCeeeccCccCcc-cCCccccCCCCCC
Q 044353          368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN--FSGEIPVEVT-NLQGLQSLNLSHNLFTG-RIPDNIGVMRSIE  443 (596)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~  443 (596)
                                    .........+++|+.|++++|.  +++..+..+. .+++|++|+|++|++++ .++..+..+++|+
T Consensus       426 --------------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          426 --------------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             --------------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred             --------------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence                          0011123346778999997543  5554444443 47889999999998875 3344557789999


Q ss_pred             EEECCCCcCccc-CCccccCCCCCCEEecccccCccC
Q 044353          444 SLDFSANQLSGQ-IPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       444 ~L~Ls~N~l~~~-~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      +|++++|.+++. ++.....+++|+.|++++|+++..
T Consensus       492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            999999998754 334456788999999999997654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=8.9e-27  Score=230.18  Aligned_cols=248  Identities=19%  Similarity=0.216  Sum_probs=211.7

Q ss_pred             cEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccccc--CChhhcCCCCCCEEEcc
Q 044353          206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGI--IPTSFRNLSILKALDMG  283 (596)
Q Consensus       206 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~  283 (596)
                      +.++.+++.++. +|..+  .++|++|++++|.++...+..|.++++|++|++++|.+...  .+..+..+++|++|+++
T Consensus        10 ~~l~c~~~~l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A           10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred             CEEEcCCCCccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence            468888888865 44433  36899999999999966556689999999999999999844  36778889999999999


Q ss_pred             CCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      +|.+. .+|..+. .+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..                
T Consensus        87 ~n~i~-~l~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~----------------  148 (306)
T 2z66_A           87 FNGVI-TMSSNFL-GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG----------------  148 (306)
T ss_dssp             SCSEE-EEEEEEE-TCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT----------------
T ss_pred             CCccc-cChhhcC-CCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc----------------
Confidence            99997 6777655 79999999999999986554 57889999999999999998776666554                


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccc-cCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSG-EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  441 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  441 (596)
                                                  +++|++|++++|.+++ ..|..+..+++|++|+|++|++++..|..+..+++
T Consensus       149 ----------------------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          149 ----------------------------LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             ----------------------------CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ----------------------------CcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence                                        4458999999999986 58889999999999999999999888999999999


Q ss_pred             CCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC-Ccc-CccccccccCCC-CCCC
Q 044353          442 IESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS-TQL-QSFGASSFAGND-LCGA  502 (596)
Q Consensus       442 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~-~~~-~~l~~~~~~~n~-lc~~  502 (596)
                      |++|++++|.+++..+..+..+++|+.|++++|++++..+.. ..+ ..++.+++++|+ .|.+
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeeccc
Confidence            999999999999888888999999999999999999887754 445 478999999999 5654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.95  E-value=2.2e-26  Score=239.21  Aligned_cols=246  Identities=20%  Similarity=0.218  Sum_probs=119.8

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS  103 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  103 (596)
                      +.++.++..++ .+|..+.  ++++.|+|++|++. .++...|.++++|++|+|++|.+....+..|..+++|++|+|++
T Consensus        46 ~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~  121 (440)
T 3zyj_A           46 SKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD  121 (440)
T ss_dssp             CEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCS
T ss_pred             CEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCC
Confidence            44555555554 2333332  44555555555554 33333555555555555555555554445555555555555555


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcc
Q 044353          104 CHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLS  183 (596)
Q Consensus       104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls  183 (596)
                      |+++...+..+..+++|++|++++|.++. ++...+..+++|++|++++|+..+..+.                      
T Consensus       122 n~l~~~~~~~~~~l~~L~~L~L~~N~i~~-~~~~~~~~l~~L~~L~l~~~~~l~~i~~----------------------  178 (440)
T 3zyj_A          122 NRLTTIPNGAFVYLSKLKELWLRNNPIES-IPSYAFNRIPSLRRLDLGELKRLSYISE----------------------  178 (440)
T ss_dssp             SCCSSCCTTTSCSCSSCCEEECCSCCCCE-ECTTTTTTCTTCCEEECCCCTTCCEECT----------------------
T ss_pred             CcCCeeCHhHhhccccCceeeCCCCcccc-cCHHHhhhCcccCEeCCCCCCCcceeCc----------------------
Confidence            55554444455555555555555555542 3333333455555555555322111110                      


Q ss_pred             cCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc
Q 044353          184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL  263 (596)
Q Consensus       184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  263 (596)
                                   ..+..+++|+.|++++|.++. +| .+..+++|++|++++|.+++..+..|.++++|+.|++++|.+
T Consensus       179 -------------~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  243 (440)
T 3zyj_A          179 -------------GAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI  243 (440)
T ss_dssp             -------------TTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred             -------------chhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCce
Confidence                         011123455555555555543 22 244455555555555555544455555555555555555555


Q ss_pred             cccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcC
Q 044353          264 SGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKF  312 (596)
Q Consensus       264 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  312 (596)
                      .++.+..|..+++|+.|+|++|+++ .++...+..+++|+.|++++|.+
T Consensus       244 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          244 QVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCE
T ss_pred             eEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCc
Confidence            5555555555555555555555554 34433333455555555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.95  E-value=2e-26  Score=240.50  Aligned_cols=248  Identities=21%  Similarity=0.225  Sum_probs=162.1

Q ss_pred             CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEcc
Q 044353           23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELR  102 (596)
Q Consensus        23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  102 (596)
                      ...++.++..++ .+|..+.  +++++|+|++|+++ .++...|.++++|++|++++|.+....+..|..+++|++|+|+
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCc-eECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            456677776666 3454443  56777777777776 3433467777777777777777777766777777777777777


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEc
Q 044353          103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL  182 (596)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~l  182 (596)
                      +|++++..+..+..+++|++|++++|.++ .++...+..+++|++|++++|...+..+.                     
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~---------------------  189 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISE---------------------  189 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECT---------------------
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccCh---------------------
Confidence            77777666666777777777777777776 34444445567777777776432211111                     


Q ss_pred             ccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353          183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR  262 (596)
Q Consensus       183 s~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  262 (596)
                                    ..+..+++|+.|++++|.+.+. | .+..+++|++|++++|.+++..|..|.++++|+.|++++|.
T Consensus       190 --------------~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  253 (452)
T 3zyi_A          190 --------------GAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ  253 (452)
T ss_dssp             --------------TTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC
T ss_pred             --------------hhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc
Confidence                          1122356677777777766643 2 35666677777777777776666667777777777777777


Q ss_pred             ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCc
Q 044353          263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFH  313 (596)
Q Consensus       263 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  313 (596)
                      +.++.+..|..+++|+.|++++|+++ .+|...+..+++|+.|++++|.+.
T Consensus       254 l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          254 VSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CceECHHHhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcC
Confidence            77666666777777777777777776 555554445667777777777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.8e-26  Score=224.11  Aligned_cols=255  Identities=19%  Similarity=0.188  Sum_probs=186.7

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS  103 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  103 (596)
                      ++++.+++.++. +|..+  .++|++|++++|.++ .++...|.++++|++|++++|.+....+..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~-ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQA-VPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSS-CCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCccc-CCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            677888888774 45433  467888888888887 55544788888888888888888877777888888888888888


Q ss_pred             CC-CCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEc
Q 044353          104 CH-LGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL  182 (596)
Q Consensus       104 n~-l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~l  182 (596)
                      |. +....+..+..+++|++|++++|.+++..+.. +..+++|++|++++|++++..+..                    
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~--------------------  148 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGL-FRGLAALQYLYLQDNALQALPDDT--------------------  148 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTT-TTTCTTCCEEECCSSCCCCCCTTT--------------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhH-hhCCcCCCEEECCCCcccccCHhH--------------------
Confidence            86 77666777888888888888888887544443 345678888888888765322221                    


Q ss_pred             ccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353          183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR  262 (596)
Q Consensus       183 s~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  262 (596)
                                      ++.+++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|..+++|+.|++++|.
T Consensus       149 ----------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          149 ----------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------hccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence                            2236788888888888887776778888889999999888888778888888889999999998


Q ss_pred             ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       263 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      +.+..+..+..+++|+.|++++|++....+....  ...++.+....+.+....|..+.
T Consensus       213 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~--~~~l~~~~~~~~~~~c~~p~~l~  269 (285)
T 1ozn_A          213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRLA  269 (285)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESGGGT
T ss_pred             CCcCCHHHcccCcccCEEeccCCCccCCCCcHHH--HHHHHhcccccCccccCCchHhC
Confidence            8877777788888899999998888644333211  22334444555555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.94  E-value=7.3e-29  Score=268.67  Aligned_cols=410  Identities=12%  Similarity=0.028  Sum_probs=253.2

Q ss_pred             cCCccCcCCCCCCEEECcCCcCc---cccC-----------hhhhhcCCCCcEEEccCCeeeeEeCCCCCC-CC-CccEE
Q 044353           36 PIPLSLGQIANLEYLDLSNNKLN---GTVS-----------EIHFLNLTQLLVFRAHGNSLVFKINPNWVP-PF-QLAFL   99 (596)
Q Consensus        36 ~~~~~~~~l~~L~~L~Ls~n~i~---~~~~-----------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L   99 (596)
                      ..+..+..+++|++|+|+++...   +.+|           ...+..+++|++|+|++|.+.......+.. ++ +|++|
T Consensus        64 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L  143 (592)
T 3ogk_B           64 TPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETL  143 (592)
T ss_dssp             CHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEE
T ss_pred             ChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEE
Confidence            33445667899999999886421   1111           112337999999999999876554444444 34 49999


Q ss_pred             EccCCC-CCC-CcchhhcCCCCCcEEEcccCcCcccCCh---hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCC
Q 044353          100 ELRSCH-LGP-RFPLWLQSQKKLYYLDISSTRISAKIPR---GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPS  174 (596)
Q Consensus       100 ~L~~n~-l~~-~~~~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~  174 (596)
                      ++++|. +.. ..+.....+++|++|++++|.+++....   .+...+++|++|++++|.+++.....+...     ...
T Consensus       144 ~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~-----~~~  218 (592)
T 3ogk_B          144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI-----ARN  218 (592)
T ss_dssp             EEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHH-----HHH
T ss_pred             ECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHH-----Hhh
Confidence            999987 221 1223345789999999999998765432   345668999999999998752111000000     001


Q ss_pred             CCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC---CCCCcccCCCCCCcEEEcccccccccCCccCcCC
Q 044353          175 LLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS---EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL  250 (596)
Q Consensus       175 ~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~---~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l  250 (596)
                      .+. +.+++++|.+.+ .+    ..+..+++|++|+++.....   ...+..+..+++|+.++++++... .+|..+..+
T Consensus       219 ~~~L~~L~L~~~~~~~-l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~  292 (592)
T 3ogk_B          219 CRSLVSVKVGDFEILE-LV----GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFA  292 (592)
T ss_dssp             CTTCCEEECSSCBGGG-GH----HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGG
T ss_pred             CCCCcEEeccCccHHH-HH----HHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhc
Confidence            112 566666666554 11    22233566777776643221   122334555667777777664332 455556666


Q ss_pred             CCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccC-----------CcCcCc-CC
Q 044353          251 NSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS-----------NKFHGD-FP  317 (596)
Q Consensus       251 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-----------n~l~~~-~~  317 (596)
                      ++|++|++++|.+.+... ..+..+++|+.|+++ +.+.+.....+...+++|++|++++           +.++.. ++
T Consensus       293 ~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~  371 (592)
T 3ogk_B          293 AQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI  371 (592)
T ss_dssp             GGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHH
T ss_pred             CCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHH
Confidence            677777777776553322 334667777777776 3333233333334566777777773           334322 11


Q ss_pred             cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEE
Q 044353          318 IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSI  397 (596)
Q Consensus       318 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  397 (596)
                      .....+++|++|+++.|.+++..+..+..                                           .+++|+.|
T Consensus       372 ~l~~~~~~L~~L~l~~~~l~~~~~~~l~~-------------------------------------------~~~~L~~L  408 (592)
T 3ogk_B          372 ALAQGCQELEYMAVYVSDITNESLESIGT-------------------------------------------YLKNLCDF  408 (592)
T ss_dssp             HHHHHCTTCSEEEEEESCCCHHHHHHHHH-------------------------------------------HCCSCCEE
T ss_pred             HHHhhCccCeEEEeecCCccHHHHHHHHh-------------------------------------------hCCCCcEE
Confidence            22334667777777666665433333221                                           25568888


Q ss_pred             Ecc----CCccccc-----CCccccCcccCCeeeccCcc--CcccCCcccc-CCCCCCEEECCCCcCccc-CCccccCCC
Q 044353          398 DIS----KNNFSGE-----IPVEVTNLQGLQSLNLSHNL--FTGRIPDNIG-VMRSIESLDFSANQLSGQ-IPQSMSNLS  464 (596)
Q Consensus       398 ~Ls----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~-~~~~~~~l~  464 (596)
                      +++    .|.+++.     ++..+.++++|+.|+|++|.  +++..+..++ .+++|++|++++|++++. .+..+..++
T Consensus       409 ~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  488 (592)
T 3ogk_B          409 RLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCP  488 (592)
T ss_dssp             EEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCT
T ss_pred             EEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCc
Confidence            886    6677642     33446779999999998543  6655555554 489999999999999863 455668899


Q ss_pred             CCCEEecccccCccC-CCCC-CccCccccccccCCCCC
Q 044353          465 FLNYLNLSNNNLNGE-IPSS-TQLQSFGASSFAGNDLC  500 (596)
Q Consensus       465 ~L~~L~ls~N~l~~~-~~~~-~~~~~l~~~~~~~n~lc  500 (596)
                      +|+.|++++|+++.. ++.. ..++.++.+++++|++.
T Consensus       489 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it  526 (592)
T 3ogk_B          489 NLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS  526 (592)
T ss_dssp             TCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred             ccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence            999999999998643 2221 35778889999998743

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=236.28  Aligned_cols=240  Identities=17%  Similarity=0.164  Sum_probs=186.0

Q ss_pred             CCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353          201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       201 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  280 (596)
                      .+++|++|++++|.+++..|..|..+++|++|++++|.+++..+  +..+++|++|++++|.+++..     ..++|++|
T Consensus        32 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~L  104 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETL  104 (317)
T ss_dssp             TGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCEE
T ss_pred             cCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCEE
Confidence            36789999999999998877889999999999999999986554  889999999999999998544     34899999


Q ss_pred             EccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCC
Q 044353          281 DMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNS  360 (596)
Q Consensus       281 ~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~  360 (596)
                      ++++|.+.+ ++..   .+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.               
T Consensus       105 ~l~~n~l~~-~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~---------------  165 (317)
T 3o53_A          105 HAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA---------------  165 (317)
T ss_dssp             ECCSSCCSE-EEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGG---------------
T ss_pred             ECCCCccCC-cCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHh---------------
Confidence            999999974 4332   367899999999999987777888899999999999999865555442               


Q ss_pred             CccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353          361 GIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  440 (596)
Q Consensus       361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  440 (596)
                                                  ..+++|+.|++++|.+++. + ....+++|++|+|++|++++ +|..+..++
T Consensus       166 ----------------------------~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~  214 (317)
T 3o53_A          166 ----------------------------ASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAA  214 (317)
T ss_dssp             ----------------------------GGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGT
T ss_pred             ----------------------------hccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccC
Confidence                                        1245588888888888754 2 23347888888888888884 444588888


Q ss_pred             CCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC--CccCccccccccCCC
Q 044353          441 SIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS--TQLQSFGASSFAGND  498 (596)
Q Consensus       441 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~--~~~~~l~~~~~~~n~  498 (596)
                      +|+.|++++|+++ .+|..+..+++|+.|++++|++.|.....  ..++.++.+.+.+++
T Consensus       215 ~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          215 GVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             TCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            8888888888888 45667888888888888888888432211  334445555555443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=6.2e-26  Score=225.75  Aligned_cols=205  Identities=18%  Similarity=0.278  Sum_probs=184.6

Q ss_pred             CCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcC-------
Q 044353          201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRN-------  273 (596)
Q Consensus       201 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-------  273 (596)
                      .+++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..|..+..       
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~  179 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEH  179 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCE
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhh
Confidence            3689999999999998 68888999999999999999998 78889999999999999998888788876654       


Q ss_pred             --CCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCc
Q 044353          274 --LSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA  351 (596)
Q Consensus       274 --l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  351 (596)
                        +++|++|++++|.++ .+|..+. .+++|++|++++|.++ .+|..+..+++|++|++++|++.+.+|..+..+    
T Consensus       180 ~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l----  252 (328)
T 4fcg_A          180 QGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGR----  252 (328)
T ss_dssp             EESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCC----
T ss_pred             ccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCC----
Confidence              999999999999998 8988876 7999999999999999 467789999999999999999998888777654    


Q ss_pred             ccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc
Q 044353          352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR  431 (596)
Q Consensus       352 ~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  431 (596)
                                                              ++|+.|+|++|.+.+.+|..+..+++|++|+|++|++.+.
T Consensus       253 ----------------------------------------~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          253 ----------------------------------------APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             ----------------------------------------CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             ----------------------------------------CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence                                                    4488999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCEEECCCCcCcc
Q 044353          432 IPDNIGVMRSIESLDFSANQLSG  454 (596)
Q Consensus       432 ~~~~~~~l~~L~~L~Ls~N~l~~  454 (596)
                      +|+.++.+++|+.+++..+.+..
T Consensus       293 iP~~l~~L~~L~~l~l~~~~~~~  315 (328)
T 4fcg_A          293 LPSLIAQLPANCIILVPPHLQAQ  315 (328)
T ss_dssp             CCGGGGGSCTTCEEECCGGGSCC
T ss_pred             ccHHHhhccCceEEeCCHHHHHH
Confidence            99999999999999999887663

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.9e-26  Score=241.93  Aligned_cols=222  Identities=18%  Similarity=0.168  Sum_probs=188.4

Q ss_pred             CCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       200 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      ..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..|  +..+++|++|+|++|.+++..+     .++|++
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~  103 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIET  103 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCE
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCE
Confidence            345689999999999999888899999999999999999986655  8899999999999999986543     389999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCC
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN  359 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~  359 (596)
                      |++++|.+.+ ++..   .+++|+.|++++|.+++..|..+..+++|+.|++++|.+++..|..+..             
T Consensus       104 L~L~~N~l~~-~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~-------------  166 (487)
T 3oja_A          104 LHAANNNISR-VSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA-------------  166 (487)
T ss_dssp             EECCSSCCCC-EEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGG-------------
T ss_pred             EECcCCcCCC-CCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhh-------------
Confidence            9999999984 4332   4689999999999999888888999999999999999999777666541             


Q ss_pred             CCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCC
Q 044353          360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVM  439 (596)
Q Consensus       360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l  439 (596)
                                                    .+++|+.|+|++|.+++..+  ...+++|+.|+|++|++++.. ..+..+
T Consensus       167 ------------------------------~l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~-~~~~~l  213 (487)
T 3oja_A          167 ------------------------------SSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG-PEFQSA  213 (487)
T ss_dssp             ------------------------------GTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC-GGGGGG
T ss_pred             ------------------------------hCCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC-HhHcCC
Confidence                                          14558899999999986533  345899999999999999644 458899


Q ss_pred             CCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          440 RSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       440 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      ++|+.|++++|.+++ +|..+..+++|+.|++++|++.|.
T Consensus       214 ~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~  252 (487)
T 3oja_A          214 AGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCG  252 (487)
T ss_dssp             TTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHH
T ss_pred             CCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCc
Confidence            999999999999995 577788999999999999999854

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=229.96  Aligned_cols=263  Identities=18%  Similarity=0.182  Sum_probs=190.8

Q ss_pred             eecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCee
Q 044353            3 FLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSL   82 (596)
Q Consensus         3 ~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l   82 (596)
                      +++.+.+.......+..+++|++|++++|.+++..|..|..+++|++|+|++|++++..   .|.++++|++|++++|.+
T Consensus        16 ~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           16 KVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL---DLESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             SCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE---EETTCTTCCEEECCSSEE
T ss_pred             eccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch---hhhhcCCCCEEECcCCcc
Confidence            45556665555556667788999999999998877788888999999999999887433   278888999999999888


Q ss_pred             eeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCC
Q 044353           83 VFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKF  162 (596)
Q Consensus        83 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  162 (596)
                      +...     ..++|++|++++|++.+..+..   +++|+.|++++|++++..+..+ ..+++|++|++++|++++..+..
T Consensus        93 ~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~~  163 (317)
T 3o53_A           93 QELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAE  163 (317)
T ss_dssp             EEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCT-GGGSSEEEEECTTSCCCEEEGGG
T ss_pred             cccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhh-hccCCCCEEECCCCCCCcccHHH
Confidence            7654     2378888888888887655433   5778888888888875444333 44678888888888764322111


Q ss_pred             CCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc
Q 044353          163 DSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS  242 (596)
Q Consensus       163 ~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  242 (596)
                                                      +.   ..+++|++|++++|.+++..+  ...+++|++|++++|.+++ 
T Consensus       164 --------------------------------~~---~~l~~L~~L~L~~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~-  205 (317)
T 3o53_A          164 --------------------------------LA---ASSDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAF-  205 (317)
T ss_dssp             --------------------------------GG---GGTTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCE-
T ss_pred             --------------------------------Hh---hccCcCCEEECCCCcCccccc--ccccccCCEEECCCCcCCc-
Confidence                                            11   125788888888888876532  3357888888888888884 


Q ss_pred             CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCccc-ccCchhhhhhcccccEEEccCC-cCcCcCC
Q 044353          243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV-GNIPTWIGETFSRLMILNLRSN-KFHGDFP  317 (596)
Q Consensus       243 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  317 (596)
                      +|..+..+++|+.|++++|.+++ .|..+..+++|+.|++++|++. +.++.++. .+++|+.+++.++ .+.+..+
T Consensus       206 l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~-~~~~L~~l~l~~~~~l~~~~~  280 (317)
T 3o53_A          206 MGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFS-KNQRVQTVAKQTVKKLTGQNE  280 (317)
T ss_dssp             ECGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCCBHHHHHHHHH-TCHHHHHHHHHHHHHHHSSSS
T ss_pred             chhhhcccCcccEEECcCCcccc-hhhHhhcCCCCCEEEccCCCccCcCHHHHHh-ccccceEEECCCchhccCCch
Confidence            44457888888888888888884 5667888888888888888887 55555555 6788888888744 4444333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.93  E-value=9.1e-25  Score=212.29  Aligned_cols=212  Identities=21%  Similarity=0.210  Sum_probs=142.3

Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL  307 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  307 (596)
                      +|++|++++|.+++..+..|.++++|++|++++|.+.++.+..|..+++|++|++++|.+. .++...+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence            4566666666665554545556666666666666666555555666666666666666665 233222225666666666


Q ss_pred             cCCcCcCcCCcccCCCCCCcEEeCCCCcCccc-CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceee
Q 044353          308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT-IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVE  386 (596)
Q Consensus       308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (596)
                      ++|.+.+..+..+..+++|++|++++|.+++. +|..+..                                        
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~----------------------------------------  147 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN----------------------------------------  147 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGG----------------------------------------
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhcc----------------------------------------
Confidence            66666655444566667777777777766642 3444443                                        


Q ss_pred             cccccccccEEEccCCcccccCCccccCcccCC----eeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          387 YNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ----SLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       387 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~----~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                          +++|+.|++++|.+++..+..+..+++|+    +|++++|++++..+..+. ..+|+.|++++|++++..+..+..
T Consensus       148 ----l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~  222 (276)
T 2z62_A          148 ----LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDR  222 (276)
T ss_dssp             ----CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTT
T ss_pred             ----CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcc
Confidence                33366677777777766666666666666    789999999866555554 458999999999999777778899


Q ss_pred             CCCCCEEecccccCccCCCCCCc
Q 044353          463 LSFLNYLNLSNNNLNGEIPSSTQ  485 (596)
Q Consensus       463 l~~L~~L~ls~N~l~~~~~~~~~  485 (596)
                      +++|+.|++++|++.|.|+....
T Consensus       223 l~~L~~L~l~~N~~~c~c~~l~~  245 (276)
T 2z62_A          223 LTSLQKIWLHTNPWDCSCPRIDY  245 (276)
T ss_dssp             CCSCCEEECCSSCBCCCTTTTHH
T ss_pred             cccccEEEccCCcccccCCchHH
Confidence            99999999999999999986533

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=1.9e-24  Score=231.26  Aligned_cols=269  Identities=25%  Similarity=0.250  Sum_probs=190.2

Q ss_pred             CCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353           22 TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL  101 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  101 (596)
                      +++.|++++|.++ .+|..+.  ++|++|+|++|.++ .+|.    .+++|++|++++|.++.. +.   .+++|++|++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLTSL-PV---LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC----CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEE
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC----cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEEC
Confidence            4666777777766 4454443  56777777777666 5553    456677777777766532 22   4566777777


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD  181 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~  181 (596)
                      ++|.+++...    .+++|+.|++++|+++. +|..    +++|++|++++|++++. +.....           -+.++
T Consensus       109 s~N~l~~l~~----~l~~L~~L~L~~N~l~~-lp~~----l~~L~~L~Ls~N~l~~l-~~~~~~-----------L~~L~  167 (622)
T 3g06_A          109 FSNPLTHLPA----LPSGLCKLWIFGNQLTS-LPVL----PPGLQELSVSDNQLASL-PALPSE-----------LCKLW  167 (622)
T ss_dssp             CSCCCCCCCC----CCTTCCEEECCSSCCSC-CCCC----CTTCCEEECCSSCCSCC-CCCCTT-----------CCEEE
T ss_pred             cCCcCCCCCC----CCCCcCEEECCCCCCCc-CCCC----CCCCCEEECcCCcCCCc-CCccCC-----------CCEEE
Confidence            7776654322    45667777777776653 4432    35677777777766532 111100           05566


Q ss_pred             cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                      +++|.+++. +       ..+++|+.|++++|.+++ +|.   .+++|+.|++++|.++ .+|..   +++|+.|++++|
T Consensus       168 L~~N~l~~l-~-------~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~~---~~~L~~L~Ls~N  231 (622)
T 3g06_A          168 AYNNQLTSL-P-------MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPAL---PSGLKELIVSGN  231 (622)
T ss_dssp             CCSSCCSCC-C-------CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECCSS
T ss_pred             CCCCCCCCC-c-------ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCCC---CCCCCEEEccCC
Confidence            677666542 1       236789999999999986 333   2478999999999998 45543   478999999999


Q ss_pred             cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCC
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP  341 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  341 (596)
                      .++++ |   ..+++|+.|++++|.++ .+|.    .+++|+.|++++|.++ .+|..+..+++|+.|++++|++++..|
T Consensus       232 ~L~~l-p---~~l~~L~~L~Ls~N~L~-~lp~----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~  301 (622)
T 3g06_A          232 RLTSL-P---VLPSELKELMVSGNRLT-SLPM----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTL  301 (622)
T ss_dssp             CCSCC-C---CCCTTCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHH
T ss_pred             ccCcC-C---CCCCcCcEEECCCCCCC-cCCc----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCH
Confidence            99964 3   46789999999999998 7776    4689999999999999 678889999999999999999998888


Q ss_pred             cccccccc
Q 044353          342 RCINNFSA  349 (596)
Q Consensus       342 ~~~~~l~~  349 (596)
                      ..+..++.
T Consensus       302 ~~l~~L~~  309 (622)
T 3g06_A          302 QALREITS  309 (622)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHhccc
Confidence            88877664

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3e-24  Score=229.64  Aligned_cols=269  Identities=23%  Similarity=0.263  Sum_probs=207.0

Q ss_pred             CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEE
Q 044353           45 ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLD  124 (596)
Q Consensus        45 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  124 (596)
                      .++++|++++|.++ .+|. .+.  ++|++|++++|.++.. +.   .+++|++|++++|++++ +|.   .+++|++|+
T Consensus        40 ~~l~~L~ls~n~L~-~lp~-~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLNVGESGLT-TLPD-CLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEECCSSCCS-CCCS-CCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEE
T ss_pred             CCCcEEEecCCCcC-ccCh-hhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEE
Confidence            46999999999998 8886 333  7999999999998843 33   57899999999999985 443   679999999


Q ss_pred             cccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCC
Q 044353          125 ISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKN  204 (596)
Q Consensus       125 l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~  204 (596)
                      +++|.+++ +|.    .+++|+.|++++|+++.. +.                                       .+++
T Consensus       108 Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~~l-p~---------------------------------------~l~~  142 (622)
T 3g06_A          108 IFSNPLTH-LPA----LPSGLCKLWIFGNQLTSL-PV---------------------------------------LPPG  142 (622)
T ss_dssp             ECSCCCCC-CCC----CCTTCCEEECCSSCCSCC-CC---------------------------------------CCTT
T ss_pred             CcCCcCCC-CCC----CCCCcCEEECCCCCCCcC-CC---------------------------------------CCCC
Confidence            99999985 554    368899999999987531 11                                       0367


Q ss_pred             ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353          205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE  284 (596)
Q Consensus       205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  284 (596)
                      |++|++++|.+++. |.   .+++|+.|++++|.+++ +|   ..+++|+.|++++|.++++.+    .+++|+.|++++
T Consensus       143 L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l~~----~~~~L~~L~L~~  210 (622)
T 3g06_A          143 LQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASLPT----LPSELYKLWAYN  210 (622)
T ss_dssp             CCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCS
T ss_pred             CCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCCCC----ccchhhEEECcC
Confidence            88888888888753 32   34678888888888884 45   346788888888888885332    347888888888


Q ss_pred             CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353          285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY  364 (596)
Q Consensus       285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  364 (596)
                      |.++ .+|.    .+++|+.|++++|.+++ +|   ..+++|+.|++++|.++ .+|.   .                  
T Consensus       211 N~l~-~l~~----~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~------------------  259 (622)
T 3g06_A          211 NRLT-SLPA----LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---L------------------  259 (622)
T ss_dssp             SCCS-SCCC----CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---C------------------
T ss_pred             Cccc-ccCC----CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---c------------------
Confidence            8887 6664    24788899999988884 55   45678899999999887 3443   1                  


Q ss_pred             cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353          365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  440 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  440 (596)
                                                +++|+.|+|++|.++ .+|..+..+++|+.|+|++|.+++..|..+..++
T Consensus       260 --------------------------~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          260 --------------------------PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             --------------------------CTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             --------------------------cccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence                                      445888899999888 6788888999999999999998887777665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.3e-24  Score=208.58  Aligned_cols=207  Identities=20%  Similarity=0.230  Sum_probs=131.9

Q ss_pred             ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353          205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE  284 (596)
Q Consensus       205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  284 (596)
                      .+.++++++.++. +|..+.  +++++|++++|.+++..+..|.++++|++|++++|.++.+.+..|..+++|++|++++
T Consensus        18 ~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~   94 (270)
T 2o6q_A           18 KNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD   94 (270)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred             CCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence            4455555555543 332221  3455555555555544444455555555555555555544444444444555555554


Q ss_pred             CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353          285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY  364 (596)
Q Consensus       285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  364 (596)
                      |                         .+++..+..+..+++|++|++++|.+++..+..+..                  
T Consensus        95 n-------------------------~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~------------------  131 (270)
T 2o6q_A           95 N-------------------------KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS------------------  131 (270)
T ss_dssp             S-------------------------CCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT------------------
T ss_pred             C-------------------------cCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc------------------
Confidence            4                         444333344455555555555555555333333322                  


Q ss_pred             cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353          365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  444 (596)
                                                +++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|..+++|++
T Consensus       132 --------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  185 (270)
T 2o6q_A          132 --------------------------LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKT  185 (270)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCE
T ss_pred             --------------------------CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCE
Confidence                                      333566666666666555566888999999999999999777778999999999


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      |++++|++++..+..+..+++|+.|++++|++.|.++..
T Consensus       186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  224 (270)
T 2o6q_A          186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNGI  224 (270)
T ss_dssp             EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSSS
T ss_pred             EECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCccH
Confidence            999999999877778999999999999999999988754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.92  E-value=1.4e-26  Score=229.14  Aligned_cols=226  Identities=23%  Similarity=0.282  Sum_probs=129.0

Q ss_pred             ccEEeCcCCcCC-CCCCcccC-------CCCCCcEEEcccccccccCCccC--cCCCCCcEEEccCCcccccCChhhcCC
Q 044353          205 IEFLKLSKNHFS-EDIPDCWM-------NWPRLRMLNLGNNNFTGSLPMSI--GALNSLMSLNLRNNRLSGIIPTSFRNL  274 (596)
Q Consensus       205 L~~L~l~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l  274 (596)
                      ++.|++++|.+. ..+|..+.       ++++|++|++++|.+++..|..+  ..+++|++|++++|.+.+. |..+..+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHH
Confidence            555555555552 22332222       45556666666666655555544  5555666666666666544 4444444


Q ss_pred             -----CCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCc--CCccc--CCCCCCcEEeCCCCcCcccCCcccc
Q 044353          275 -----SILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGD--FPIQL--CRLGSLQILDVAYNSLSGTIPRCIN  345 (596)
Q Consensus       275 -----~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~  345 (596)
                           ++|++|++++|++.+..+..+. .+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++ ++... 
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~-  220 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVR-VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMET-PSGVC-  220 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCC-CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCC-HHHHH-
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhc-cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcc-hHHHH-
Confidence                 5566666666665522223332 455666666666654432  12222  555666666666666551 11000 


Q ss_pred             ccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCC-ccccCcccCCeeecc
Q 044353          346 NFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP-VEVTNLQGLQSLNLS  424 (596)
Q Consensus       346 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls  424 (596)
                                                             ......+++|+.|++++|.+++..| ..+..+++|++|+|+
T Consensus       221 ---------------------------------------~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls  261 (312)
T 1wwl_A          221 ---------------------------------------SALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLS  261 (312)
T ss_dssp             ---------------------------------------HHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECT
T ss_pred             ---------------------------------------HHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECC
Confidence                                                   0011124457777777777776553 445567778888888


Q ss_pred             CccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353          425 HNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       425 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  478 (596)
                      +|+++ .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       262 ~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          262 FTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             TSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             CCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            88777 6666655  7788888888888755 54 7777788888888887764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.92  E-value=1.4e-27  Score=258.77  Aligned_cols=410  Identities=12%  Similarity=0.067  Sum_probs=210.8

Q ss_pred             cccCCCCCCEEECcCCcccc---cCCc------------cCcCCCCCCEEECcCCcCccccChhhhh-cCCCCcEEEccC
Q 044353           16 QLGRFKTLRALDLSNNTVNG---PIPL------------SLGQIANLEYLDLSNNKLNGTVSEIHFL-NLTQLLVFRAHG   79 (596)
Q Consensus        16 ~l~~l~~L~~L~ls~n~i~~---~~~~------------~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-~l~~L~~L~L~~   79 (596)
                      .+.++++|++|+++++....   ..|.            ....+++|++|+|++|.+++.... .+. .+++|++|++++
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~-~l~~~~~~L~~L~L~~  139 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLE-LIAKSFKNFKVLVLSS  139 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHH-HHHHHCTTCCEEEEES
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHH-HHHHhCCCCcEEeCCC
Confidence            45678888888888875221   1111            123578888899988887755444 343 688888998888


Q ss_pred             C-eeeeE-eCCCCCCCCCccEEEccCCCCCCCcchhh----cCCCCCcEEEcccCc--CcccCChhHHhcCCCCcEEEcc
Q 044353           80 N-SLVFK-INPNWVPPFQLAFLELRSCHLGPRFPLWL----QSQKKLYYLDISSTR--ISAKIPRGFWNSIFQYDYLNVS  151 (596)
Q Consensus        80 n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~l~  151 (596)
                      | .+... .+.....+++|++|++++|.+++..+..+    ..+++|+.|+++++.  ++......+...+++|++|+++
T Consensus       140 ~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~  219 (594)
T 2p1m_B          140 CEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN  219 (594)
T ss_dssp             CEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECC
T ss_pred             cCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecC
Confidence            8 34322 22233467888888888888765444433    366788888888886  3322223334446888888888


Q ss_pred             cccccccCCCCCCCCCCccccCCCCC-ceEEcccCc--cccccccccccCCCCCCCccEE-eCcCCcCCCCCCcccCCCC
Q 044353          152 GNQIYGGVPKFDSPSVPLITTPSLLG-SIFDLSNNA--LSGSIFHLICQGENFSKNIEFL-KLSKNHFSEDIPDCWMNWP  227 (596)
Q Consensus       152 ~n~l~~~~~~~~~~~~~~~~~~~~~~-~~l~ls~n~--l~~~~~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~~~~l~  227 (596)
                      +|......+..+..         .+. +.++++.+.  +.......+...+..+++|+.| .+..... +.++..+..++
T Consensus       220 ~~~~~~~l~~~~~~---------~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~  289 (594)
T 2p1m_B          220 RAVPLEKLATLLQR---------APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCS  289 (594)
T ss_dssp             TTSCHHHHHHHHHH---------CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHT
T ss_pred             CCCcHHHHHHHHhc---------CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhhC
Confidence            77211111110000         000 223322221  0000001111122334555555 2222211 11222223445


Q ss_pred             CCcEEEcccccccccC-CccCcCCCCCcEEEccCCccccc-CChhhcCCCCCCEEEccC---------CcccccCchhhh
Q 044353          228 RLRMLNLGNNNFTGSL-PMSIGALNSLMSLNLRNNRLSGI-IPTSFRNLSILKALDMGE---------NELVGNIPTWIG  296 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~  296 (596)
                      +|++|++++|.+++.. ...+..+++|++|++++| +... .+.....+++|++|++.+         +.+++.....+.
T Consensus       290 ~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            5666666655544221 112334555666666555 2211 111222355566665522         233322222223


Q ss_pred             hhcccccEEEccCCcCcCcCCcccC-CCCCCcEEeCC--C----CcCcccCCccccccccCcccCCCCCCCCccccCCCC
Q 044353          297 ETFSRLMILNLRSNKFHGDFPIQLC-RLGSLQILDVA--Y----NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGD  369 (596)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~--~----n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  369 (596)
                      ..+++|++|.+..+.+++.....+. .+++|+.|+++  +    +.+++ .|..                          
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~-~~~~--------------------------  421 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL-EPLD--------------------------  421 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC-CCTH--------------------------
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC-Cchh--------------------------
Confidence            2355566665555555433222232 35555666555  2    22221 0000                          


Q ss_pred             CceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccC-cccCCeeeccCccCcccCCccc-cCCCCCCEEEC
Q 044353          370 NEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTN-LQGLQSLNLSHNLFTGRIPDNI-GVMRSIESLDF  447 (596)
Q Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L  447 (596)
                                  .........+++|+.|++++ .+++..+..+.. +++|+.|+|++|.+++..+..+ ..+++|+.|++
T Consensus       422 ------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L  488 (594)
T 2p1m_B          422 ------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEI  488 (594)
T ss_dssp             ------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEE
T ss_pred             ------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEEC
Confidence                        00011123356677777766 555444444444 6778888888887765544444 55778888888


Q ss_pred             CCCcCcccCCc-cccCCCCCCEEecccccCc
Q 044353          448 SANQLSGQIPQ-SMSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       448 s~N~l~~~~~~-~~~~l~~L~~L~ls~N~l~  477 (596)
                      ++|.+++.... ....+++|+.|++++|+++
T Consensus       489 ~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~  519 (594)
T 2p1m_B          489 RDCPFGDKALLANASKLETMRSLWMSSCSVS  519 (594)
T ss_dssp             ESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred             cCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence            88877644333 3344677888888887763

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=8.4e-24  Score=206.33  Aligned_cols=207  Identities=21%  Similarity=0.259  Sum_probs=146.9

Q ss_pred             cCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccc
Q 044353          223 WMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRL  302 (596)
Q Consensus       223 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L  302 (596)
                      +.+++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|+.|++++|.++ .++..  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcC
Confidence            344555666666666665 3443332  45666666666666555666666666666666666665 33332  246677


Q ss_pred             cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353          303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG  382 (596)
Q Consensus       303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (596)
                      ++|++++|.++ .+|..+..+++|++|++++|.+++..+..|..                                    
T Consensus        80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~------------------------------------  122 (290)
T 1p9a_G           80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG------------------------------------  122 (290)
T ss_dssp             CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT------------------------------------
T ss_pred             CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcC------------------------------------
Confidence            77777777766 55666677777777777777777544444443                                    


Q ss_pred             ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                              +++|+.|++++|++++..+..|..+++|+.|+|++|++++..+..|..+++|+.|+|++|+++ .+|..+..
T Consensus       123 --------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~  193 (290)
T 1p9a_G          123 --------LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG  193 (290)
T ss_dssp             --------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred             --------CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcc
Confidence                    334677778888887666777888999999999999999766677888999999999999999 66777777


Q ss_pred             CCCCCEEecccccCccCCC
Q 044353          463 LSFLNYLNLSNNNLNGEIP  481 (596)
Q Consensus       463 l~~L~~L~ls~N~l~~~~~  481 (596)
                      +++|+.+++++|++.|.|.
T Consensus       194 ~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TCCCSEEECCSCCBCCSGG
T ss_pred             cccCCeEEeCCCCccCcCc
Confidence            8899999999999998874

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.3e-24  Score=214.97  Aligned_cols=245  Identities=18%  Similarity=0.137  Sum_probs=170.0

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCccc-ccCCccCc-------CCCCCCEEECcCCcCccccChhhh-hcCCCC
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVN-GPIPLSLG-------QIANLEYLDLSNNKLNGTVSEIHF-LNLTQL   72 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~-~~~~~~~~-------~l~~L~~L~Ls~n~i~~~~~~~~~-~~l~~L   72 (596)
                      |++++|.+  .+|..+...  |++|++++|.++ ..+|..+.       ++++|++|+|++|++++.+|...| ..+++|
T Consensus        48 l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L  123 (312)
T 1wwl_A           48 LLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDL  123 (312)
T ss_dssp             HHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCC
T ss_pred             Eeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCc
Confidence            45667777  556655544  777788888774 33454444       677888888888887766666332 777888


Q ss_pred             cEEEccCCeeeeEeCCCCCCC-----CCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccC--ChhH-HhcCCC
Q 044353           73 LVFRAHGNSLVFKINPNWVPP-----FQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKI--PRGF-WNSIFQ  144 (596)
Q Consensus        73 ~~L~L~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~--~~~~-~~~l~~  144 (596)
                      ++|++++|.+++. +..+..+     ++|++|++++|++.+..+..++++++|++|++++|++.+.+  +..+ +..+++
T Consensus       124 ~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~  202 (312)
T 1wwl_A          124 NILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT  202 (312)
T ss_dssp             SEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTT
T ss_pred             cEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCC
Confidence            8888888877765 5555554     77888888888887777777888888888888888765432  2222 245678


Q ss_pred             CcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-ccc
Q 044353          145 YDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCW  223 (596)
Q Consensus       145 L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~  223 (596)
                      |++|++++|++++..                                 ......+..+++|++|++++|.+.+..| ..+
T Consensus       203 L~~L~L~~N~l~~~~---------------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          203 LQVLALRNAGMETPS---------------------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCEEECTTSCCCCHH---------------------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             CCEEECCCCcCcchH---------------------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence            888888888764100                                 0000111125688888888888877664 445


Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG  289 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  289 (596)
                      ..+++|++|++++|.++ .+|..+.  ++|++|++++|.+++. |. +..+++|++|++++|++++
T Consensus       250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            66788888888888888 6676665  7888888888888866 44 7888888888888888763

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=1.2e-24  Score=228.26  Aligned_cols=221  Identities=20%  Similarity=0.206  Sum_probs=189.5

Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM  303 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  303 (596)
                      ..+++|++|++++|.+++..|..|..+++|++|+|++|.+.+..|  +..+++|++|++++|.++ .+|.     .++|+
T Consensus        31 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~-----~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLV-----GPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEE-----CTTCC
T ss_pred             ccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCC-----CCCcC
Confidence            345589999999999998888899999999999999999997665  899999999999999997 4442     47999


Q ss_pred             EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccc
Q 044353          304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGF  383 (596)
Q Consensus       304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (596)
                      +|++++|.+++..+.   .+++|+.|++++|.+++..|..++.                                     
T Consensus       103 ~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~-------------------------------------  142 (487)
T 3oja_A          103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGC-------------------------------------  142 (487)
T ss_dssp             EEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGG-------------------------------------
T ss_pred             EEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcC-------------------------------------
Confidence            999999999865543   4688999999999999777776655                                     


Q ss_pred             eeecccccccccEEEccCCcccccCCcccc-CcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          384 LVEYNSILNLVRSIDISKNNFSGEIPVEVT-NLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       384 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                             +++|+.|++++|.+++..|..+. .+++|++|+|++|.+++. +. ...+++|+.|+|++|.+++.+|. +..
T Consensus       143 -------l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~-~~~  212 (487)
T 3oja_A          143 -------RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAFMGPE-FQS  212 (487)
T ss_dssp             -------GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCEECGG-GGG
T ss_pred             -------CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-cc-cccCCCCCEEECCCCCCCCCCHh-HcC
Confidence                   44489999999999988888876 799999999999999865 33 44689999999999999976554 889


Q ss_pred             CCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCC
Q 044353          463 LSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGA  502 (596)
Q Consensus       463 l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~  502 (596)
                      +++|+.|++++|.+++..+....++.+..+++.+|+ .|+.
T Consensus       213 l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          213 AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             GTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            999999999999999865555777889999999999 6654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.4e-23  Score=202.22  Aligned_cols=211  Identities=20%  Similarity=0.213  Sum_probs=183.2

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.+.+..+..|.++++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            57999999999999888888999999999999999999888888999999999999999999888899999999999999


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCc-CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGD-FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG  361 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~  361 (596)
                      ++|.+. .++...+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+..++.         
T Consensus       108 ~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~---------  177 (276)
T 2z62_A          108 VETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL---------  177 (276)
T ss_dssp             TTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT---------
T ss_pred             CCCCcc-ccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccc---------
Confidence            999998 45543344799999999999999864 5889999999999999999999776777776665433         


Q ss_pred             ccccCCCCCceeeeeEEEeccceeeccccccccc-EEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCC
Q 044353          362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVR-SIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR  440 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  440 (596)
                                                      +. .|++++|.+++..+..+. ..+|++|+|++|++++..+..+..++
T Consensus       178 --------------------------------l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          178 --------------------------------LNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             --------------------------------CCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             --------------------------------cceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccc
Confidence                                            33 799999999966665554 45899999999999977777789999


Q ss_pred             CCCEEECCCCcCcccC
Q 044353          441 SIESLDFSANQLSGQI  456 (596)
Q Consensus       441 ~L~~L~Ls~N~l~~~~  456 (596)
                      +|+.|++++|.+++..
T Consensus       225 ~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          225 SLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             SCCEEECCSSCBCCCT
T ss_pred             cccEEEccCCcccccC
Confidence            9999999999998543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.1e-26  Score=251.62  Aligned_cols=398  Identities=12%  Similarity=0.039  Sum_probs=267.1

Q ss_pred             ccCCCCCCEEECcCCcccccCCccCc-CCCCCCEEECcCC-cCccccChhhhhcCCCCcEEEccCCeeeeEeCC----CC
Q 044353           17 LGRFKTLRALDLSNNTVNGPIPLSLG-QIANLEYLDLSNN-KLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP----NW   90 (596)
Q Consensus        17 l~~l~~L~~L~ls~n~i~~~~~~~~~-~l~~L~~L~Ls~n-~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~   90 (596)
                      ...+++|++|++++|.+++..+..+. .+++|++|+|++| .+++......+.++++|++|++++|.++.....    ..
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            34789999999999999877666665 6899999999999 554221222556899999999999997754433    23


Q ss_pred             CCCCCccEEEccCCC--CCC-CcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccccc-------cccC
Q 044353           91 VPPFQLAFLELRSCH--LGP-RFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGNQI-------YGGV  159 (596)
Q Consensus        91 ~~l~~L~~L~L~~n~--l~~-~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~l-------~~~~  159 (596)
                      ..+++|+.|++++|.  +.. .+.....++++|+.|++++| .+. .++. +...+++|++|+++.+..       .+..
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~  258 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLS  258 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHH-HHhcCCcceEcccccccCccchhhHHHHH
Confidence            367799999999987  321 12223456799999999998 443 3443 345579999999765531       1100


Q ss_pred             CCCCCCCCCccccCCCCC-ceE-EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC-cccCCCCCCcEEEccc
Q 044353          160 PKFDSPSVPLITTPSLLG-SIF-DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP-DCWMNWPRLRMLNLGN  236 (596)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~-~~l-~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~  236 (596)
                      + .+         ..... +.+ .+..     .....+...+..+++|++|++++|.+++... ..+..+++|++|++++
T Consensus       259 ~-~l---------~~~~~L~~Ls~~~~-----~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~  323 (594)
T 2p1m_B          259 V-AL---------SGCKELRCLSGFWD-----AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLD  323 (594)
T ss_dssp             H-HH---------HTCTTCCEEECCBT-----CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEG
T ss_pred             H-HH---------hcCCCcccccCCcc-----cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcC
Confidence            0 00         00111 222 1111     1112222222346899999999998764322 2356889999999999


Q ss_pred             cccccc-CCccCcCCCCCcEEEccC---------CcccccCChhhc-CCCCCCEEEccCCcccccCchhhhhhcccccEE
Q 044353          237 NNFTGS-LPMSIGALNSLMSLNLRN---------NRLSGIIPTSFR-NLSILKALDMGENELVGNIPTWIGETFSRLMIL  305 (596)
Q Consensus       237 n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L  305 (596)
                      | ++.. ++.....+++|++|++++         +.+++.....+. .+++|+.|.+..+.+++.....+...+++|+.|
T Consensus       324 ~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L  402 (594)
T 2p1m_B          324 Y-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRF  402 (594)
T ss_dssp             G-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEE
T ss_pred             c-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCccee
Confidence            8 4422 222233588999999943         455544333343 589999999999998866666666568999999


Q ss_pred             Ecc--C----CcCcCc-----CCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceee
Q 044353          306 NLR--S----NKFHGD-----FPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVE  374 (596)
Q Consensus       306 ~L~--~----n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  374 (596)
                      +++  +    +.++..     ++..+..+++|+.|++++ .+++..+..+..                            
T Consensus       403 ~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~----------------------------  453 (594)
T 2p1m_B          403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGT----------------------------  453 (594)
T ss_dssp             EEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHH----------------------------
T ss_pred             EeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHH----------------------------
Confidence            999  3    445421     112256788999999977 555433322221                            


Q ss_pred             eeEEEeccceeecccccccccEEEccCCcccccCCccc-cCcccCCeeeccCccCcccCCc-cccCCCCCCEEECCCCcC
Q 044353          375 DALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGRIPD-NIGVMRSIESLDFSANQL  452 (596)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~-~~~~l~~L~~L~Ls~N~l  452 (596)
                                     .+++|+.|+|++|.+++..+..+ .++++|++|+|++|.+++.... .+..+++|+.|++++|++
T Consensus       454 ---------------~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          454 ---------------YAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             ---------------HCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             ---------------hchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence                           25569999999999976655555 6789999999999999654443 445689999999999999


Q ss_pred             cccCCccc-cCCCCCCEEecccccC
Q 044353          453 SGQIPQSM-SNLSFLNYLNLSNNNL  476 (596)
Q Consensus       453 ~~~~~~~~-~~l~~L~~L~ls~N~l  476 (596)
                      +......+ ..+|.|+...+..+.-
T Consensus       519 ~~~~~~~l~~~lp~l~i~~~~~~~~  543 (594)
T 2p1m_B          519 SFGACKLLGQKMPKLNVEVIDERGA  543 (594)
T ss_dssp             BHHHHHHHHHHCTTEEEEEECSSSC
T ss_pred             CHHHHHHHHHhCCCCEEEEecCCCc
Confidence            65444444 5578887766665543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=1.6e-22  Score=195.67  Aligned_cols=201  Identities=21%  Similarity=0.263  Sum_probs=155.1

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN  257 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  257 (596)
                      +.++++++.++. ++..+      .+++++|++++|.+.+..+..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus        19 ~~l~~~~~~l~~-ip~~~------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~   91 (270)
T 2o6q_A           19 NSVDCSSKKLTA-IPSNI------PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLW   91 (270)
T ss_dssp             TEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEE
T ss_pred             CEEEccCCCCCc-cCCCC------CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEE
Confidence            679999998874 33332      35899999999999988888899999999999999999977777788999999999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.++
T Consensus        92 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           92 VTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            9999999888888888999999999999887 455444446777777777777776544445566666666666665554


Q ss_pred             ccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc
Q 044353          338 GTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG  417 (596)
Q Consensus       338 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  417 (596)
                                                                                          +..+..|..+++
T Consensus       171 --------------------------------------------------------------------~~~~~~~~~l~~  182 (270)
T 2o6q_A          171 --------------------------------------------------------------------RVPEGAFDKLTE  182 (270)
T ss_dssp             --------------------------------------------------------------------CCCTTTTTTCTT
T ss_pred             --------------------------------------------------------------------EeChhHhccCCC
Confidence                                                                                334445666777


Q ss_pred             CCeeeccCccCcccCCccccCCCCCCEEECCCCcCcc
Q 044353          418 LQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSG  454 (596)
Q Consensus       418 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~  454 (596)
                      |++|+|++|++++..+..+..+++|+.|++++|.+..
T Consensus       183 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  219 (270)
T 2o6q_A          183 LKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC  219 (270)
T ss_dssp             CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeC
Confidence            8888888888776666667778888888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=1.8e-22  Score=196.89  Aligned_cols=207  Identities=21%  Similarity=0.209  Sum_probs=173.9

Q ss_pred             cCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCC
Q 044353          246 SIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGS  325 (596)
Q Consensus       246 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  325 (596)
                      .+..++++++++++++.++.+. ..+  .++++.|++++|.+. .++...+..+++|++|++++|.+++..+  ...+++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip-~~~--~~~l~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALP-PDL--PKDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCC-SCC--CTTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTT
T ss_pred             cccccCCccEEECCCCCCCcCC-CCC--CCCCCEEEcCCCcCC-ccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCc
Confidence            3567889999999999999544 333  368999999999998 4444444479999999999999985433  278899


Q ss_pred             CcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccc
Q 044353          326 LQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFS  405 (596)
Q Consensus       326 L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  405 (596)
                      |++|++++|.++ .+|..+..                                            +++|+.|++++|+++
T Consensus        79 L~~L~Ls~N~l~-~l~~~~~~--------------------------------------------l~~L~~L~l~~N~l~  113 (290)
T 1p9a_G           79 LGTLDLSHNQLQ-SLPLLGQT--------------------------------------------LPALTVLDVSFNRLT  113 (290)
T ss_dssp             CCEEECCSSCCS-SCCCCTTT--------------------------------------------CTTCCEEECCSSCCC
T ss_pred             CCEEECCCCcCC-cCchhhcc--------------------------------------------CCCCCEEECCCCcCc
Confidence            999999999998 56654433                                            455899999999999


Q ss_pred             ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCc
Q 044353          406 GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQ  485 (596)
Q Consensus       406 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~  485 (596)
                      +..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|+++...+..|..+++|+.|++++|+++...+....
T Consensus       114 ~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~  193 (290)
T 1p9a_G          114 SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG  193 (290)
T ss_dssp             CCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcc
Confidence            77778999999999999999999988888889999999999999999977777889999999999999999966555567


Q ss_pred             cCccccccccCCC-CCCCC
Q 044353          486 LQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       486 ~~~l~~~~~~~n~-lc~~~  503 (596)
                      ...++.+.+.+|| .|.+.
T Consensus       194 ~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          194 SHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TCCCSEEECCSCCBCCSGG
T ss_pred             cccCCeEEeCCCCccCcCc
Confidence            7788999999999 77653

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=1.6e-24  Score=221.31  Aligned_cols=254  Identities=14%  Similarity=0.189  Sum_probs=194.1

Q ss_pred             cCccccccccccccCCCCCCCccEEeCcCCcCCCCCC----cccCCCCCCcEEEccccc---ccccCCccC-------cC
Q 044353          184 NNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP----DCWMNWPRLRMLNLGNNN---FTGSLPMSI-------GA  249 (596)
Q Consensus       184 ~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~l~~n~---l~~~~~~~~-------~~  249 (596)
                      .+.++......+...+..+++|++|++++|.+.+..+    ..+..+++|++|++++|.   +++.+|..+       ..
T Consensus        13 ~~~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~   92 (386)
T 2ca6_A           13 LDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK   92 (386)
T ss_dssp             ESSCCSHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh
Confidence            3344444444455555567899999999999876533    347788999999999964   444555444       68


Q ss_pred             CCCCcEEEccCCcccc----cCChhhcCCCCCCEEEccCCcccccCchhhhh---hc---------ccccEEEccCCcCc
Q 044353          250 LNSLMSLNLRNNRLSG----IIPTSFRNLSILKALDMGENELVGNIPTWIGE---TF---------SRLMILNLRSNKFH  313 (596)
Q Consensus       250 l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~l---------~~L~~L~L~~n~l~  313 (596)
                      +++|++|+|++|.+..    ..+..+..+++|++|++++|.+.+..+..+..   .+         ++|++|++++|.++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            8999999999999987    36677889999999999999986444443332   23         89999999999987


Q ss_pred             -CcCC---cccCCCCCCcEEeCCCCcCccc-----CCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353          314 -GDFP---IQLCRLGSLQILDVAYNSLSGT-----IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL  384 (596)
Q Consensus       314 -~~~~---~~~~~l~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (596)
                       ..++   ..+..+++|++|++++|.++..     .+..+.                                       
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~---------------------------------------  213 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA---------------------------------------  213 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGG---------------------------------------
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhh---------------------------------------
Confidence             3334   3567788999999999988621     111222                                       


Q ss_pred             eecccccccccEEEccCCccc----ccCCccccCcccCCeeeccCccCccc----CCccc--cCCCCCCEEECCCCcCcc
Q 044353          385 VEYNSILNLVRSIDISKNNFS----GEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNI--GVMRSIESLDFSANQLSG  454 (596)
Q Consensus       385 ~~~~~~~~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~--~~l~~L~~L~Ls~N~l~~  454 (596)
                           .+++|+.|+|++|.++    +.+|..+..+++|++|+|++|.+++.    ++..+  +.+++|++|+|++|.++.
T Consensus       214 -----~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~  288 (386)
T 2ca6_A          214 -----YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  288 (386)
T ss_dssp             -----GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             -----cCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence                 2566899999999996    56788899999999999999999865    45666  348999999999999997


Q ss_pred             ----cCCccc-cCCCCCCEEecccccCccCCC
Q 044353          455 ----QIPQSM-SNLSFLNYLNLSNNNLNGEIP  481 (596)
Q Consensus       455 ----~~~~~~-~~l~~L~~L~ls~N~l~~~~~  481 (596)
                          .+|..+ .++++|++|++++|++++..+
T Consensus       289 ~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          289 DAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence                477766 668999999999999987653

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2e-22  Score=195.08  Aligned_cols=203  Identities=20%  Similarity=0.225  Sum_probs=129.8

Q ss_pred             CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353          225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI  304 (596)
Q Consensus       225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  304 (596)
                      .+++|+.|++++|.++. . ..+..+++|++|++++|.+.+.  ..+..+++|++|++++|.++ .++...+..+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  113 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKE  113 (272)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             cccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCE
Confidence            44455555555555442 1 1244455555555555555532  24555555555555555555 333333334555666


Q ss_pred             EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353          305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL  384 (596)
Q Consensus       305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (596)
                      |++++|.+++..+..+..+++|++|++++|.+++..+..+..                                      
T Consensus       114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------------------------------------  155 (272)
T 3rfs_A          114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------------------------------------  155 (272)
T ss_dssp             EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------------------------------------
T ss_pred             EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------------------------------------
Confidence            666666655544555566666666666666666433333332                                      


Q ss_pred             eecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044353          385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS  464 (596)
Q Consensus       385 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  464 (596)
                            +++|+.|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|+.|++++|.+.+.       ++
T Consensus       156 ------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~  222 (272)
T 3rfs_A          156 ------LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CP  222 (272)
T ss_dssp             ------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TT
T ss_pred             ------CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc-------Cc
Confidence                  33466677777777766666778889999999999999887887888999999999999988743       56


Q ss_pred             CCCEEecccccCccCCCCC
Q 044353          465 FLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       465 ~L~~L~ls~N~l~~~~~~~  483 (596)
                      .|+.++++.|.++|.+|..
T Consensus       223 ~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          223 GIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             TTHHHHHHHHHTGGGBBCT
T ss_pred             HHHHHHHHHHhCCCcccCc
Confidence            7889999999999988864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=2.6e-22  Score=194.24  Aligned_cols=186  Identities=20%  Similarity=0.255  Sum_probs=111.9

Q ss_pred             cCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCc
Q 044353          248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ  327 (596)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  327 (596)
                      ..+++|+.|++++|.+...  ..+..+++|++|++++|.+. .++ .+. .+++|++|++++|.+++..+..+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~-~~~-~l~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH-DIS-ALK-ELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCC-CCG-GGT-TCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCC-Cch-hhc-CCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            3455666666666666532  23556666666666666665 232 222 466666666666666655555566666666


Q ss_pred             EEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc
Q 044353          328 ILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE  407 (596)
Q Consensus       328 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  407 (596)
                      +|++++|.+++..+..+..                                            +++|++|++++|.+++.
T Consensus       113 ~L~L~~n~l~~~~~~~~~~--------------------------------------------l~~L~~L~L~~n~l~~~  148 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDK--------------------------------------------LTNLTYLNLAHNQLQSL  148 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTT--------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred             EEECCCCcCCccCHHHhcc--------------------------------------------CCCCCEEECCCCccCcc
Confidence            6666666666443333333                                            33356666666666655


Q ss_pred             CCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353          408 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       408 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      .+..|..+++|++|++++|++++..+..++.+++|++|++++|++++..+..+..+++|+.|++++|++.|.+|.
T Consensus       149 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  223 (272)
T 3rfs_A          149 PKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG  223 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence            555566666666666666666655555566666666666666666665555566666666666666666666553

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=7.3e-24  Score=214.25  Aligned_cols=256  Identities=18%  Similarity=0.202  Sum_probs=187.5

Q ss_pred             EEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC----cccCCCC-CCcEEEcccccccccCCccCcCC----
Q 044353          180 FDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP----DCWMNWP-RLRMLNLGNNNFTGSLPMSIGAL----  250 (596)
Q Consensus       180 l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l----  250 (596)
                      ++++.|.+++.++..+.    ..++|++|++++|.+++..+    .++..++ +|++|++++|.+++..+..+..+    
T Consensus         3 ~~ls~n~~~~~~~~~~~----~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~   78 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTS----IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAI   78 (362)
T ss_dssp             EECCCCTTCCHHHHHHT----SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTS
T ss_pred             cccccccchHHHHHHHh----CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhcc
Confidence            45666666665554433    25679999999999987666    6677888 89999999999987767666654    


Q ss_pred             -CCCcEEEccCCcccccCChhh----cCC-CCCCEEEccCCcccccCchhhhhh----cccccEEEccCCcCcCcC----
Q 044353          251 -NSLMSLNLRNNRLSGIIPTSF----RNL-SILKALDMGENELVGNIPTWIGET----FSRLMILNLRSNKFHGDF----  316 (596)
Q Consensus       251 -~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~~~~~~~~~----l~~L~~L~L~~n~l~~~~----  316 (596)
                       ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+...    .++|++|++++|.++...    
T Consensus        79 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  158 (362)
T 3goz_A           79 PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDEL  158 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHH
T ss_pred             CCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHH
Confidence             899999999999987766644    344 899999999999985555444322    358999999999888533    


Q ss_pred             CcccCCCC-CCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeeccccc-ccc
Q 044353          317 PIQLCRLG-SLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSIL-NLV  394 (596)
Q Consensus       317 ~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~L  394 (596)
                      +..+...+ +|++|++++|.+++..+..+...-                                        ..+ ++|
T Consensus       159 ~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l----------------------------------------~~~~~~L  198 (362)
T 3goz_A          159 IQILAAIPANVNSLNLRGNNLASKNCAELAKFL----------------------------------------ASIPASV  198 (362)
T ss_dssp             HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHH----------------------------------------HTSCTTC
T ss_pred             HHHHhcCCccccEeeecCCCCchhhHHHHHHHH----------------------------------------HhCCCCC
Confidence            33345555 899999999998865554443210                                        112 368


Q ss_pred             cEEEccCCccccc----CCccccC-cccCCeeeccCccCcccCC----ccccCCCCCCEEECCCCcCcccC-------Cc
Q 044353          395 RSIDISKNNFSGE----IPVEVTN-LQGLQSLNLSHNLFTGRIP----DNIGVMRSIESLDFSANQLSGQI-------PQ  458 (596)
Q Consensus       395 ~~L~Ls~n~l~~~----~~~~~~~-l~~L~~L~Ls~n~l~~~~~----~~~~~l~~L~~L~Ls~N~l~~~~-------~~  458 (596)
                      +.|+|++|.+++.    ++..+.. .++|++|+|++|.+++..+    ..+..+++|++|++++|.+..+.       +.
T Consensus       199 ~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~  278 (362)
T 3goz_A          199 TSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGA  278 (362)
T ss_dssp             CEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHT
T ss_pred             CEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHH
Confidence            9999999999853    4445555 4589999999999986554    34567789999999999855333       34


Q ss_pred             cccCCCCCCEEecccccCccC
Q 044353          459 SMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       459 ~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      .+..+++|+.||+++|++...
T Consensus       279 ~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          279 AFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             TSTTCCEEEEECTTSCBCCGG
T ss_pred             HhccCCceEEEecCCCcCCCc
Confidence            567788899999999998755

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=1.1e-23  Score=212.80  Aligned_cols=81  Identities=19%  Similarity=0.139  Sum_probs=53.0

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCC----ccCcCCC-CCCEEECcCCcCccccChhhhhcC-----CC
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIP----LSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNL-----TQ   71 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~----~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l-----~~   71 (596)
                      +.|++|.+++.+|..+...++|++|++++|.+++..+    .+|..++ +|++|+|++|++++..+ ..+..+     ++
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~-~~l~~~l~~~~~~   81 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNS-DELVQILAAIPAN   81 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCH-HHHHHHHHTSCTT
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHH-HHHHHHHhccCCC
Confidence            4677788887777777777778888888888776555    5666777 77777777777763322 244443     55


Q ss_pred             CcEEEccCCeee
Q 044353           72 LLVFRAHGNSLV   83 (596)
Q Consensus        72 L~~L~L~~n~l~   83 (596)
                      |++|++++|.+.
T Consensus        82 L~~L~Ls~n~l~   93 (362)
T 3goz_A           82 VTSLNLSGNFLS   93 (362)
T ss_dssp             CCEEECCSSCGG
T ss_pred             ccEEECcCCcCC
Confidence            555555555443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.1e-23  Score=215.13  Aligned_cols=248  Identities=19%  Similarity=0.247  Sum_probs=138.9

Q ss_pred             CCccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcC---ccccChh------hhhcCCCCcEEEccC
Q 044353           13 LTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKL---NGTVSEI------HFLNLTQLLVFRAHG   79 (596)
Q Consensus        13 ~~~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i---~~~~~~~------~~~~l~~L~~L~L~~   79 (596)
                      ++..+..+++|++|+|++|.+++.    ++..+..+++|++|+|++|.+   .+.+|..      .+..+++|++|+|++
T Consensus        24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            455666677777777777777654    233466677777777777533   2333321      123445555555554


Q ss_pred             CeeeeEeCCCCCCCCCccEEEccCCCCCC----CcchhhcCCCCCcEEEcccCcCcccCChhHHhc---C---------C
Q 044353           80 NSLVFKINPNWVPPFQLAFLELRSCHLGP----RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS---I---------F  143 (596)
Q Consensus        80 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~---l---------~  143 (596)
                                              |.+..    .++..+..+++|++|++++|.+++..+..+...   +         +
T Consensus       104 ------------------------n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~  159 (386)
T 2ca6_A          104 ------------------------NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP  159 (386)
T ss_dssp             ------------------------CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             ------------------------CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCC
Confidence                                    44443    244455566666666666666653333333221   1         5


Q ss_pred             CCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCC-----C
Q 044353          144 QYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSE-----D  218 (596)
Q Consensus       144 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~-----~  218 (596)
                      +|++|++++|+++...                                ...+...+..+++|++|++++|.+..     .
T Consensus       160 ~L~~L~L~~n~l~~~~--------------------------------~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l  207 (386)
T 2ca6_A          160 PLRSIICGRNRLENGS--------------------------------MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL  207 (386)
T ss_dssp             CCCEEECCSSCCTGGG--------------------------------HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHH
T ss_pred             CCcEEECCCCCCCcHH--------------------------------HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHH
Confidence            6666666666553110                                00111122224566666666666652     2


Q ss_pred             CCcccCCCCCCcEEEccccccc----ccCCccCcCCCCCcEEEccCCccccc----CChhhcC--CCCCCEEEccCCccc
Q 044353          219 IPDCWMNWPRLRMLNLGNNNFT----GSLPMSIGALNSLMSLNLRNNRLSGI----IPTSFRN--LSILKALDMGENELV  288 (596)
Q Consensus       219 ~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~  288 (596)
                      .+..+..+++|++|++++|.++    ..+|..+..+++|+.|+|++|.+.+.    .+..+..  +++|+.|++++|.++
T Consensus       208 ~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~  287 (386)
T 2ca6_A          208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIE  287 (386)
T ss_dssp             HHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCC
Confidence            3335566667777777777664    34555666667777777777776644    3344432  677777777777776


Q ss_pred             c----cCchhhhhhcccccEEEccCCcCcCcC
Q 044353          289 G----NIPTWIGETFSRLMILNLRSNKFHGDF  316 (596)
Q Consensus       289 ~----~~~~~~~~~l~~L~~L~L~~n~l~~~~  316 (596)
                      +    .+|..++..+++|++|++++|.+++..
T Consensus       288 ~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          288 LDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            4    266665445677777777777776544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=7.4e-22  Score=187.27  Aligned_cols=131  Identities=19%  Similarity=0.215  Sum_probs=74.8

Q ss_pred             CccEEeCcCCcCCCCCCcccCCCCCCcEEEccccc-ccccCCccCcCCCCCcEEEccC-CcccccCChhhcCCCCCCEEE
Q 044353          204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNN-FTGSLPMSIGALNSLMSLNLRN-NRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +++.|++++|.++++.+..|..+++|++|++++|. ++...+..|.++++|++|++++ |.++++.+..|.++++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            56666666666665555556666666666666665 5544455566666666666665 666655555566666666666


Q ss_pred             ccCCcccccCchhhhhhccccc---EEEccCC-cCcCcCCcccCCCCCCc-EEeCCCCcCc
Q 044353          282 MGENELVGNIPTWIGETFSRLM---ILNLRSN-KFHGDFPIQLCRLGSLQ-ILDVAYNSLS  337 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~  337 (596)
                      +++|.++ .+|.  +..+++|+   +|++++| .+++..+..|..+++|+ .|++++|.++
T Consensus       112 l~~n~l~-~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~  169 (239)
T 2xwt_C          112 IFNTGLK-MFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT  169 (239)
T ss_dssp             EEEECCC-SCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred             CCCCCCc-cccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence            6666665 3444  22444554   5555555 55544444455555555 5555555444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.1e-22  Score=200.91  Aligned_cols=208  Identities=19%  Similarity=0.219  Sum_probs=117.0

Q ss_pred             CccEEeCcCCcCCCCCCccc--CCCCCCcEEEcccccccccCC----ccCcCCCCCcEEEccCCcccccCChhhcCCCCC
Q 044353          204 NIEFLKLSKNHFSEDIPDCW--MNWPRLRMLNLGNNNFTGSLP----MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSIL  277 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  277 (596)
                      +|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|.+.+..+..|..+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            45555555555555555444  455555555555555553222    122334455555555555554444445555555


Q ss_pred             CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      ++|++++|++.+...                     -..+..+..+++|++|++++|.++ .++.....           
T Consensus       172 ~~L~Ls~N~l~~~~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-----------  218 (310)
T 4glp_A          172 TSLDLSDNPGLGERG---------------------LMAALCPHKFPAIQNLALRNTGME-TPTGVCAA-----------  218 (310)
T ss_dssp             CEEECCSCTTCHHHH---------------------HHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH-----------
T ss_pred             CEEECCCCCCccchh---------------------hhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH-----------
Confidence            555555554331100                     001122345566666777776665 11111000           


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCc---ccCCeeeccCccCcccCCc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNL---QGLQSLNLSHNLFTGRIPD  434 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~Ls~n~l~~~~~~  434 (596)
                                                   ....+++|++|++++|.+++..|..+..+   ++|++|+|++|+++ .+|.
T Consensus       219 -----------------------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~  268 (310)
T 4glp_A          219 -----------------------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPK  268 (310)
T ss_dssp             -----------------------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCS
T ss_pred             -----------------------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhh
Confidence                                         01113446777777777776656666555   58888888888887 5666


Q ss_pred             cccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353          435 NIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       435 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  478 (596)
                      .+.  ++|++|+|++|++++. |. +..+++|+.|++++|+++.
T Consensus       269 ~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          269 GLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             hhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            664  7888888888888854 33 6777888888888888763

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.1e-22  Score=187.00  Aligned_cols=196  Identities=18%  Similarity=0.211  Sum_probs=128.5

Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCc-ccccCChhhcCCCCCCEEEccC-CcccccCchhhhhhcccccEE
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR-LSGIIPTSFRNLSILKALDMGE-NELVGNIPTWIGETFSRLMIL  305 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~~l~~L~~L  305 (596)
                      +|++|++++|.+++..+..|.++++|++|++++|. ++.+.+..|.++++|++|++++ |.++ .++...+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            78888888888886666678888888888888886 7767777788888888888887 7776 5555444467777788


Q ss_pred             EccCCcCcCcCCcccCCCCCCc---EEeCCCC-cCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEec
Q 044353          306 NLRSNKFHGDFPIQLCRLGSLQ---ILDVAYN-SLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK  381 (596)
Q Consensus       306 ~L~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (596)
                      ++++|.+++ +|. +..+++|+   +|++++| .+++..+..|..                                   
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-----------------------------------  153 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQG-----------------------------------  153 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTT-----------------------------------
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccc-----------------------------------
Confidence            877777774 454 66666666   7777777 666433333433                                   


Q ss_pred             cceeeccccccccc-EEEccCCcccccCCccccCcccCCeeeccCcc-CcccCCccccCC-CCCCEEECCCCcCcccCCc
Q 044353          382 GFLVEYNSILNLVR-SIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM-RSIESLDFSANQLSGQIPQ  458 (596)
Q Consensus       382 ~~~~~~~~~~~~L~-~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~  458 (596)
                               +++|+ .|++++|.++...+..|.. ++|++|+|++|+ +++..+..|..+ ++|+.|++++|+++...+.
T Consensus       154 ---------l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~  223 (239)
T 2xwt_C          154 ---------LCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK  223 (239)
T ss_dssp             ---------TBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT
T ss_pred             ---------hhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh
Confidence                     33356 6666666666333333443 666666666663 665555566666 6666666666666643332


Q ss_pred             cccCCCCCCEEecccc
Q 044353          459 SMSNLSFLNYLNLSNN  474 (596)
Q Consensus       459 ~~~~l~~L~~L~ls~N  474 (596)
                         .+++|+.|+++++
T Consensus       224 ---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          224 ---GLEHLKELIARNT  236 (239)
T ss_dssp             ---TCTTCSEEECTTC
T ss_pred             ---HhccCceeeccCc
Confidence               4456666666654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=5.1e-21  Score=182.88  Aligned_cols=182  Identities=18%  Similarity=0.225  Sum_probs=124.1

Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL  307 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  307 (596)
                      ..++++++++.++ .+|..+.  +.++.|++++|.+.+..+..|..+++|++|++++|.+.+ ++...+..+++|++|++
T Consensus        15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEEC
T ss_pred             CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEEC
Confidence            4556777777666 4554443  466667777766666666666666666666666666652 33322224555555555


Q ss_pred             cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353          308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY  387 (596)
Q Consensus       308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (596)
                      ++|.+++..+..+..+++                                                              
T Consensus        91 ~~n~l~~~~~~~~~~l~~--------------------------------------------------------------  108 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQ--------------------------------------------------------------  108 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTT--------------------------------------------------------------
T ss_pred             CCCcccccChhHhcccCC--------------------------------------------------------------
Confidence            555554433334444444                                                              


Q ss_pred             ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCC
Q 044353          388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN  467 (596)
Q Consensus       388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  467 (596)
                            |++|++++|.+++..+..|..+++|++|+|++|++++..+..|+.+++|++|+|++|++++..+..+..+++|+
T Consensus       109 ------L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  182 (251)
T 3m19_A          109 ------LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ  182 (251)
T ss_dssp             ------CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred             ------CCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCC
Confidence                  45555555555545555677888999999999999877777889999999999999999988888899999999


Q ss_pred             EEecccccCccCCC
Q 044353          468 YLNLSNNNLNGEIP  481 (596)
Q Consensus       468 ~L~ls~N~l~~~~~  481 (596)
                      .|++++|++.|.+.
T Consensus       183 ~L~l~~N~~~c~~~  196 (251)
T 3m19_A          183 TITLFGNQFDCSRC  196 (251)
T ss_dssp             EEECCSCCBCTTST
T ss_pred             EEEeeCCceeCCcc
Confidence            99999999998743

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.2e-22  Score=203.34  Aligned_cols=231  Identities=17%  Similarity=0.215  Sum_probs=158.8

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc-CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS-LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEE
Confidence            5788888888888776554 45678888888888887754 666777888888888888888777777788888888888


Q ss_pred             ccCC-ccccc-CchhhhhhcccccEEEccCC-cCcCc-CCcccCCCC-CCcEEeCCCCc--Cc-ccCCccccccccCccc
Q 044353          282 MGEN-ELVGN-IPTWIGETFSRLMILNLRSN-KFHGD-FPIQLCRLG-SLQILDVAYNS--LS-GTIPRCINNFSAMATT  353 (596)
Q Consensus       282 L~~n-~l~~~-~~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~~n~--l~-~~~~~~~~~l~~L~~l  353 (596)
                      +++| .+++. ++..+ ..+++|++|++++| .+++. ++..+..++ +|++|++++|.  ++ +.+|..+.        
T Consensus       149 L~~~~~l~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~--------  219 (336)
T 2ast_B          149 LSGCSGFSEFALQTLL-SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR--------  219 (336)
T ss_dssp             CTTCBSCCHHHHHHHH-HHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH--------
T ss_pred             CCCCCCCCHHHHHHHH-hcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh--------
Confidence            8888 56532 33333 36788888888888 77643 455667777 88888888873  33 22222222        


Q ss_pred             CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCc-ccccCCccccCcccCCeeeccCcc-Cccc
Q 044353          354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNN-FSGEIPVEVTNLQGLQSLNLSHNL-FTGR  431 (596)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  431 (596)
                                                          .+++|+.|++++|. +++..+..+..+++|++|++++|. +...
T Consensus       220 ------------------------------------~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~  263 (336)
T 2ast_B          220 ------------------------------------RCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE  263 (336)
T ss_dssp             ------------------------------------HCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG
T ss_pred             ------------------------------------hCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH
Confidence                                                24557788888887 666667777788888888888884 3322


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCCccccCC-CCCCEEecccccCccCCCCC
Q 044353          432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNL-SFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l-~~L~~L~ls~N~l~~~~~~~  483 (596)
                      ....++.+++|+.|++++| ++.   +.+..+ ..++.|++++|.+++..|..
T Consensus       264 ~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          264 TLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             GGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             HHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcceEEecccCccccCCc
Confidence            2235677888888888887 332   233333 23666667888887766543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.86  E-value=1.4e-22  Score=202.92  Aligned_cols=257  Identities=16%  Similarity=0.131  Sum_probs=167.0

Q ss_pred             CCCCEEECcCCcccccCCccCcCC--CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeE-eCCCCCCCCCcc
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQI--ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK-INPNWVPPFQLA   97 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l--~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~   97 (596)
                      ..++.++++++.+.   +..+..+  +++++|++++|.+.+..+.  +.++++|++|++++|.+... .+..+..+++|+
T Consensus        47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~--~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE--HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS--CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh--hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            34778888887776   3455555  7888888888887755443  55678888888888877644 555677788888


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEcccc-cccccCCCCCCCCCCccccCCC
Q 044353           98 FLELRSCHLGPRFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGN-QIYGGVPKFDSPSVPLITTPSL  175 (596)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~~~~~~~~  175 (596)
                      +|++++|.+.+..+..++.+++|++|++++| .+++......+..+++|++|++++| .+++..                
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~----------------  185 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH----------------  185 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH----------------
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH----------------
Confidence            8888888887777788888888999999888 6765333344455778888888877 653210                


Q ss_pred             CCceEEcccCccccccccccccCCCCCC-CccEEeCcCC--cCC-CCCCcccCCCCCCcEEEccccc-ccccCCccCcCC
Q 044353          176 LGSIFDLSNNALSGSIFHLICQGENFSK-NIEFLKLSKN--HFS-EDIPDCWMNWPRLRMLNLGNNN-FTGSLPMSIGAL  250 (596)
Q Consensus       176 ~~~~l~ls~n~l~~~~~~~~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l  250 (596)
                                         +...+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+
T Consensus       186 -------------------~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l  246 (336)
T 2ast_B          186 -------------------VQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  246 (336)
T ss_dssp             -------------------HHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             -------------------HHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCC
Confidence                               011112256 7777888777  343 2344455667777788887777 565666677777


Q ss_pred             CCCcEEEccCCc-ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC
Q 044353          251 NSLMSLNLRNNR-LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC  321 (596)
Q Consensus       251 ~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  321 (596)
                      ++|++|++++|. +.......+..+++|+.|++++| +....-..+.   .++..|++++|.+++..|..+.
T Consensus       247 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l~---~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          247 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLK---EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHH---HHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHHH---hhCcceEEecccCccccCCccc
Confidence            777777777774 32222235667777777777777 3321111111   2344555666666665555444

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=5e-21  Score=188.55  Aligned_cols=193  Identities=22%  Similarity=0.383  Sum_probs=116.7

Q ss_pred             CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353          225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI  304 (596)
Q Consensus       225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  304 (596)
                      .+++|++|++++|.++. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+. .++ .+. .+++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~-~~~-~~~-~l~~L~~  111 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NVS-AIA-GLQSIKT  111 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CCG-GGT-TCTTCCE
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCC-Cch-hhc-CCCCCCE
Confidence            34455555555555542 22 34555555555555555554333  555556666666666554 333 222 4556666


Q ss_pred             EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccce
Q 044353          305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFL  384 (596)
Q Consensus       305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (596)
                      |++++|.+++. + .+..+++|++|++++|.+++..+  +..                                      
T Consensus       112 L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~--------------------------------------  149 (308)
T 1h6u_A          112 LDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAG--------------------------------------  149 (308)
T ss_dssp             EECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGG--------------------------------------
T ss_pred             EECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccC--------------------------------------
Confidence            66666666532 2 25666666666666666653211  221                                      


Q ss_pred             eecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCC
Q 044353          385 VEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS  464 (596)
Q Consensus       385 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  464 (596)
                            +++|+.|++++|.+++. +. +..+++|+.|++++|++++..+  +..+++|++|++++|++++..  .+..++
T Consensus       150 ------l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~  217 (308)
T 1h6u_A          150 ------LTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTS  217 (308)
T ss_dssp             ------CTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCT
T ss_pred             ------CCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCC
Confidence                  34466677777777643 32 7777888888888888874333  777888888888888887554  377788


Q ss_pred             CCCEEecccccCcc
Q 044353          465 FLNYLNLSNNNLNG  478 (596)
Q Consensus       465 ~L~~L~ls~N~l~~  478 (596)
                      +|+.|++++|++++
T Consensus       218 ~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          218 NLFIVTLTNQTITN  231 (308)
T ss_dssp             TCCEEEEEEEEEEC
T ss_pred             CCCEEEccCCeeec
Confidence            88888888888765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.86  E-value=1.7e-21  Score=192.45  Aligned_cols=223  Identities=20%  Similarity=0.255  Sum_probs=167.9

Q ss_pred             CCcEEEcccccccccCCc---cCcCCCCCcEEEccCCcccccCChhh--cCCCCCCEEEccCCcccccCc----hhhhhh
Q 044353          228 RLRMLNLGNNNFTGSLPM---SIGALNSLMSLNLRNNRLSGIIPTSF--RNLSILKALDMGENELVGNIP----TWIGET  298 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~----~~~~~~  298 (596)
                      .++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+. .
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~-~  143 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW-L  143 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT-B
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh-h
Confidence            456666666655421000   11234568888888888877777776  778888888888888875444    2223 5


Q ss_pred             cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCccc--CC--ccccccccCcccCCCCCCCCccccCCCCCceee
Q 044353          299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT--IP--RCINNFSAMATTDSSDPNSGIFYASSGDNEIVE  374 (596)
Q Consensus       299 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~--~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~  374 (596)
                      +++|++|++++|.+.+..+..+..+++|++|++++|++.+.  ++  ..+..                            
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~----------------------------  195 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK----------------------------  195 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS----------------------------
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc----------------------------
Confidence            88999999999999888888999999999999999997642  11  11122                            


Q ss_pred             eeEEEeccceeecccccccccEEEccCCcccccCCc----cccCcccCCeeeccCccCcccCCccccCC---CCCCEEEC
Q 044353          375 DALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPV----EVTNLQGLQSLNLSHNLFTGRIPDNIGVM---RSIESLDF  447 (596)
Q Consensus       375 ~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~----~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l---~~L~~L~L  447 (596)
                                      +++|++|++++|.++. ++.    .+..+++|++|+|++|++++..|..+..+   ++|++|++
T Consensus       196 ----------------l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~L  258 (310)
T 4glp_A          196 ----------------FPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNL  258 (310)
T ss_dssp             ----------------SCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEEC
T ss_pred             ----------------CCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEEC
Confidence                            5568889999999962 232    35788999999999999998878877776   69999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCCCC
Q 044353          448 SANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLC  500 (596)
Q Consensus       448 s~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~lc  500 (596)
                      ++|+++ .+|..+.  ++|+.|++++|++++. |....++.++.+++++|++.
T Consensus       259 s~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          259 SFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQPDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CCTTSCCCCSCEECSSTTTS
T ss_pred             CCCCCC-chhhhhc--CCCCEEECCCCcCCCC-chhhhCCCccEEECcCCCCC
Confidence            999999 5666654  7999999999999974 44567889999999999854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=2.8e-20  Score=177.68  Aligned_cols=181  Identities=20%  Similarity=0.243  Sum_probs=148.2

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      ...+.++++++.++. +|..+.  +.++.|++++|.+++..+..|.++++|++|++++|.+.+..+..|..+++|++|++
T Consensus        14 ~~~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            467899999999975 554443  58999999999999888889999999999999999999998889999999999999


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      ++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++                        
T Consensus        91 ~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~------------------------  145 (251)
T 3m19_A           91 ANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS------------------------  145 (251)
T ss_dssp             TTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC------------------------
T ss_pred             CCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCc------------------------
Confidence            999998 6666665589999999999999997666667777777777777777663                        


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI  442 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L  442 (596)
                                                                  ..+..|..+++|++|+|++|++++..+..+..+++|
T Consensus       146 --------------------------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          146 --------------------------------------------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             --------------------------------------------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             --------------------------------------------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCC
Confidence                                                        333356667777777777777776666677777888


Q ss_pred             CEEECCCCcCccc
Q 044353          443 ESLDFSANQLSGQ  455 (596)
Q Consensus       443 ~~L~Ls~N~l~~~  455 (596)
                      +.|++++|.+...
T Consensus       182 ~~L~l~~N~~~c~  194 (251)
T 3m19_A          182 QTITLFGNQFDCS  194 (251)
T ss_dssp             CEEECCSCCBCTT
T ss_pred             CEEEeeCCceeCC
Confidence            8888888877754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.84  E-value=4.5e-20  Score=185.41  Aligned_cols=241  Identities=21%  Similarity=0.129  Sum_probs=119.4

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEe-CCCCCCCCCccE-EEc
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKI-NPNWVPPFQLAF-LEL  101 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~-L~L  101 (596)
                      ++++-++++++ .+|..+  .+++++|+|++|+|+ .++..+|.++++|++|+|++|.+...+ ..+|.++++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCS-EECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCC-CcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            34555555555 334333  235555555555555 555445555555555555555543322 234555555443 334


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccc-ccccccCCCCCCCCCCccccCCCCCceE
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSG-NQIYGGVPKFDSPSVPLITTPSLLGSIF  180 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~~~~~~~~~~~~l  180 (596)
                      .+|++.+..+..|..+++|++|++++|+++...+..+ ....++..+++.+ +++....+..+..               
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~-~~~~~l~~l~l~~~~~i~~l~~~~f~~---------------  151 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHK-IHSLQKVLLDIQDNINIHTIERNSFVG---------------  151 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTT-CCBSSCEEEEEESCTTCCEECTTSSTT---------------
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhh-cccchhhhhhhccccccccccccchhh---------------
Confidence            4455555555556666666666666666553222222 2233455555543 2332111111100               


Q ss_pred             EcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccc-ccccccCCccCcCCCCCcEEEcc
Q 044353          181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLR  259 (596)
Q Consensus       181 ~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~  259 (596)
                                          ....++.|++++|.++.+.+..| ...+|+++++.+ |.++...+++|.++++|++|+++
T Consensus       152 --------------------~~~~l~~L~L~~N~i~~i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs  210 (350)
T 4ay9_X          152 --------------------LSFESVILWLNKNGIQEIHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDIS  210 (350)
T ss_dssp             --------------------SBSSCEEEECCSSCCCEECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECT
T ss_pred             --------------------cchhhhhhccccccccCCChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcC
Confidence                                01245666666666665444333 334566666653 44554444456666667777777


Q ss_pred             CCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCC
Q 044353          260 NNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN  310 (596)
Q Consensus       260 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n  310 (596)
                      +|+++.+.+..|   .+|+.|.+.++.-...+|. + ..+++|+.+++.++
T Consensus       211 ~N~l~~lp~~~~---~~L~~L~~l~~~~l~~lP~-l-~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          211 RTRIHSLPSYGL---ENLKKLRARSTYNLKKLPT-L-EKLVALMEASLTYP  256 (350)
T ss_dssp             TSCCCCCCSSSC---TTCCEEECTTCTTCCCCCC-T-TTCCSCCEEECSCH
T ss_pred             CCCcCccChhhh---ccchHhhhccCCCcCcCCC-c-hhCcChhhCcCCCC
Confidence            776665444333   3344444433332235553 2 24667777776543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=3.1e-20  Score=182.92  Aligned_cols=192  Identities=20%  Similarity=0.295  Sum_probs=160.3

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +++|++|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+.  ..+..+++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~  113 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (308)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEEeeCCCccCc-h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEE
Confidence            57899999999998763 4 58889999999999999985444  88999999999999999864  3688999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG  361 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~  361 (596)
                      +++|.+. .++. + ..+++|++|++++|.+++..+  +..+++|+.|++++|.+++. +. +..               
T Consensus       114 l~~n~l~-~~~~-l-~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~---------------  171 (308)
T 1h6u_A          114 LTSTQIT-DVTP-L-AGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LAN---------------  171 (308)
T ss_dssp             CTTSCCC-CCGG-G-TTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTT---------------
T ss_pred             CCCCCCC-Cchh-h-cCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcC---------------
Confidence            9999997 5554 3 378999999999999985433  88899999999999998842 22 322               


Q ss_pred             ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353          362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  441 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  441 (596)
                                                   +++|+.|++++|.+++..+  +..+++|++|+|++|++++..  .+..+++
T Consensus       172 -----------------------------l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~  218 (308)
T 1h6u_A          172 -----------------------------LSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSN  218 (308)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTT
T ss_pred             -----------------------------CCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCC
Confidence                                         5568999999999985443  888999999999999998554  3889999


Q ss_pred             CCEEECCCCcCcc
Q 044353          442 IESLDFSANQLSG  454 (596)
Q Consensus       442 L~~L~Ls~N~l~~  454 (596)
                      |+.|++++|.+++
T Consensus       219 L~~L~l~~N~i~~  231 (308)
T 1h6u_A          219 LFIVTLTNQTITN  231 (308)
T ss_dssp             CCEEEEEEEEEEC
T ss_pred             CCEEEccCCeeec
Confidence            9999999999985

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.82  E-value=2.4e-20  Score=174.01  Aligned_cols=179  Identities=21%  Similarity=0.216  Sum_probs=131.5

Q ss_pred             CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCC-cccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353          278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFP-IQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS  356 (596)
Q Consensus       278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  356 (596)
                      +.+++++|.++ .+|..+.   +.+++|++++|.+++..+ ..|..+++|++|++++|.+++..+..|..          
T Consensus        14 ~~l~~s~n~l~-~iP~~~~---~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------   79 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP---QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG----------   79 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred             CEeEeCCCCcc-cCccCCC---CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC----------
Confidence            35666666665 5555432   345667777777665433 34667777777777777777554445544          


Q ss_pred             CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353          357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  436 (596)
                                                        +++|++|+|++|.+++..+..|..+++|++|+|++|++++..|..|
T Consensus        80 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  125 (220)
T 2v70_A           80 ----------------------------------ASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSF  125 (220)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSS
T ss_pred             ----------------------------------CCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHc
Confidence                                              3347778888888877777789999999999999999998889999


Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccc-cccCCCCCCCCC
Q 044353          437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGAS-SFAGNDLCGAPL  504 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~-~~~~n~lc~~~~  504 (596)
                      ..+++|+.|+|++|++++..|..|..+++|+.|++++|++.|.|+..+....+... ...+++.|..|.
T Consensus       126 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~  194 (220)
T 2v70_A          126 IGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPY  194 (220)
T ss_dssp             TTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESG
T ss_pred             CCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCCh
Confidence            99999999999999999888999999999999999999999988754332222222 234566776664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=1.5e-19  Score=181.63  Aligned_cols=242  Identities=15%  Similarity=0.154  Sum_probs=180.7

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccC-CccCcCCCCCcE-
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSL-PMSIGALNSLMS-  255 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~-  255 (596)
                      ++++.+++.++. +|..+      ++++++|+|++|.++.+.+.+|.++++|++|++++|.+.+.+ +.+|.+++++++ 
T Consensus        12 ~~v~C~~~~Lt~-iP~~l------~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~   84 (350)
T 4ay9_X           12 RVFLCQESKVTE-IPSDL------PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI   84 (350)
T ss_dssp             TEEEEESTTCCS-CCTTC------CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEE
T ss_pred             CEEEecCCCCCc-cCcCc------CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhh
Confidence            678888888763 33332      358999999999999877788999999999999999986544 457888888765 


Q ss_pred             EEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccC-CcCcCcCCcccCCCC-CCcEEeCCC
Q 044353          256 LNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRS-NKFHGDFPIQLCRLG-SLQILDVAY  333 (596)
Q Consensus       256 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~l~~  333 (596)
                      +.+..|++..+.+..|..+++|++|++++|++. .+|...+....++..+++.+ +.+....+..|..+. .++.|++++
T Consensus        85 l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           85 RIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK  163 (350)
T ss_dssp             EEEEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS
T ss_pred             hcccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc
Confidence            667789999888999999999999999999997 56655443566788888866 466655555666664 688999999


Q ss_pred             CcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccC-CcccccCCccc
Q 044353          334 NSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK-NNFSGEIPVEV  412 (596)
Q Consensus       334 n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-n~l~~~~~~~~  412 (596)
                      |.++. +|.....                                            ..+|+.+++++ |.++...+..|
T Consensus       164 N~i~~-i~~~~f~--------------------------------------------~~~L~~l~l~~~n~l~~i~~~~f  198 (350)
T 4ay9_X          164 NGIQE-IHNSAFN--------------------------------------------GTQLDELNLSDNNNLEELPNDVF  198 (350)
T ss_dssp             SCCCE-ECTTSST--------------------------------------------TEEEEEEECTTCTTCCCCCTTTT
T ss_pred             ccccC-CChhhcc--------------------------------------------ccchhHHhhccCCcccCCCHHHh
Confidence            99984 4433222                                            23478888875 66664445678


Q ss_pred             cCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccC
Q 044353          413 TNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNL  476 (596)
Q Consensus       413 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l  476 (596)
                      .++++|+.|+|++|+|+...+..   +.+|+.|.+.++.--..+| .+..+++|+.++++++.-
T Consensus       199 ~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~~~  258 (350)
T 4ay9_X          199 HGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYPSH  258 (350)
T ss_dssp             TTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCHHH
T ss_pred             ccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCCcc
Confidence            99999999999999998444433   4566777766654443566 478889999999986543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.81  E-value=4.7e-20  Score=172.01  Aligned_cols=157  Identities=18%  Similarity=0.198  Sum_probs=127.0

Q ss_pred             CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      +.++.+++.++ .+|..+.   ++++.|++++|.+++..+..|..+++|+.|++++|.+++..|..|..+          
T Consensus        14 ~~v~c~~~~l~-~iP~~l~---~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l----------   79 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP---ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL----------   79 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC---TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC----------
T ss_pred             CEEEcCCCCcC-cCCCccC---cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC----------
Confidence            45666676665 6665443   567777787777776666677778888888888888876666666543          


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  437 (596)
                                                        ++|++|+|++|.+++..+..|.++++|++|+|++|++++..+..|.
T Consensus        80 ----------------------------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~  125 (220)
T 2v9t_B           80 ----------------------------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQ  125 (220)
T ss_dssp             ----------------------------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred             ----------------------------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcC
Confidence                                              3477888888888866666788999999999999999988899999


Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353          438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       438 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      .+++|+.|+|++|++++..+..|..+++|+.|++++|++.|.|.-
T Consensus       126 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B          126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            999999999999999988888899999999999999999988764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=8e-19  Score=162.48  Aligned_cols=110  Identities=24%  Similarity=0.297  Sum_probs=60.7

Q ss_pred             CCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEE
Q 044353          227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN  306 (596)
Q Consensus       227 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  306 (596)
                      ++|++|++++|.+++..+..|..+++|++|++++|.+.+..+..|..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            35555666666555444444555555666666666555554445555556666666666555 34443333455555666


Q ss_pred             ccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          307 LRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       307 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+++..+..+..+++|++|++++|.++
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  137 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK  137 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccc
Confidence            6555555444444555556666666665555

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.80  E-value=5.6e-19  Score=163.53  Aligned_cols=135  Identities=25%  Similarity=0.288  Sum_probs=120.5

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      .+++++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|+
T Consensus        27 ~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           27 PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEE
Confidence            46899999999999988777889999999999999999977777789999999999999999988888899999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       107 L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A          107 LNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            9999998 666665557999999999999999776667888999999999998765

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.4e-18  Score=183.52  Aligned_cols=187  Identities=29%  Similarity=0.412  Sum_probs=124.3

Q ss_pred             CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 044353          204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG  283 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  283 (596)
                      +++.|++++|.+++ +|..+  +++|++|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|+.|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            67788888888776 44433  267888888888877 455   345778888888888776 444 443  77788888


Q ss_pred             CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcc
Q 044353          284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF  363 (596)
Q Consensus       284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~  363 (596)
                      +|.++ .+|.    .+++|+.|++++|.+++ +|.   .+++|+.|++++|.+++ +|. +.                  
T Consensus       129 ~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~------------------  179 (571)
T 3cvr_A          129 NNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP------------------  179 (571)
T ss_dssp             SSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC------------------
T ss_pred             CCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh------------------
Confidence            88776 3665    36777777777777774 444   45677777777777764 443 21                  


Q ss_pred             ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccC-------CeeeccCccCcccCCccc
Q 044353          364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGL-------QSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~n~l~~~~~~~~  436 (596)
                                                  ++|+.|+|++|.++ .+|. |..  +|       +.|+|++|+|+ .+|..+
T Consensus       180 ----------------------------~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          180 ----------------------------ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ----------------------------TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ----------------------------CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence                                        23667777777776 4554 443  55       77777777776 566666


Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCC
Q 044353          437 GVMRSIESLDFSANQLSGQIPQSMSNL  463 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l  463 (596)
                      ..+++|+.|+|++|.+++.+|..+..+
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            667777777777777776666665543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.78  E-value=2.1e-18  Score=161.91  Aligned_cols=158  Identities=21%  Similarity=0.207  Sum_probs=126.8

Q ss_pred             CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353          277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS  356 (596)
Q Consensus       277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  356 (596)
                      -+.++.+++.+. .+|..+.   ++|++|++++|.+++..+..+..+++|++|++++|.++...+..|..          
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~----------   86 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP---TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS----------   86 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT----------
T ss_pred             CCEeEccCCCcC-ccCCCCC---CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc----------
Confidence            345667777665 6665443   67788888888887777777788888888888888876433333333          


Q ss_pred             CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353          357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  436 (596)
                                                        +++|+.|+|++|.+++..+..|..+++|++|+|++|+++ .+|..+
T Consensus        87 ----------------------------------l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~  131 (229)
T 3e6j_A           87 ----------------------------------LTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGI  131 (229)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTG
T ss_pred             ----------------------------------CCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCccc
Confidence                                              445788888888888777777899999999999999998 788889


Q ss_pred             cCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCC
Q 044353          437 GVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      ..+++|++|+|++|+++...+..|..+++|+.|++++|++.|.++..
T Consensus       132 ~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~  178 (229)
T 3e6j_A          132 ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECRDI  178 (229)
T ss_dssp             GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBGGG
T ss_pred             ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcchh
Confidence            99999999999999999887788999999999999999999988743

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=2.3e-18  Score=181.92  Aligned_cols=182  Identities=22%  Similarity=0.373  Sum_probs=152.2

Q ss_pred             CCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEc
Q 044353          228 RLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNL  307 (596)
Q Consensus       228 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  307 (596)
                      +++.|++++|.+++ +|..+  .++|++|++++|.++ .+|   ..+++|+.|++++|.++ .+|. +.   .+|++|++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~ip~-l~---~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-TLPE-LP---ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-CCCC-CC---TTCCEEEC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-Ccch-hh---cCCCEEEC
Confidence            89999999999985 66655  378999999999999 455   45799999999999998 4887 44   29999999


Q ss_pred             cCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeec
Q 044353          308 RSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEY  387 (596)
Q Consensus       308 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  387 (596)
                      ++|.+++ +|.   .+++|+.|++++|.+++ +|.   .                                         
T Consensus       128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~-----------------------------------------  158 (571)
T 3cvr_A          128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---L-----------------------------------------  158 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---C-----------------------------------------
T ss_pred             CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---c-----------------------------------------
Confidence            9999996 665   67899999999999984 443   1                                         


Q ss_pred             ccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCC-------CEEECCCCcCcccCCccc
Q 044353          388 NSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSI-------ESLDFSANQLSGQIPQSM  460 (596)
Q Consensus       388 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L-------~~L~Ls~N~l~~~~~~~~  460 (596)
                         +++|+.|++++|.+++ +|. |.  ++|+.|+|++|+|+ .+|. +..  +|       +.|+|++|+|+ .+|..+
T Consensus       159 ---l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l  226 (571)
T 3cvr_A          159 ---PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENI  226 (571)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGG
T ss_pred             ---CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHH
Confidence               4458999999999996 666 65  99999999999999 6776 654  77       99999999999 577777


Q ss_pred             cCCCCCCEEecccccCccCCCC
Q 044353          461 SNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       461 ~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      ..+++|+.|++++|++++.+|.
T Consensus       227 ~~l~~L~~L~L~~N~l~~~~p~  248 (571)
T 3cvr_A          227 LSLDPTCTIILEDNPLSSRIRE  248 (571)
T ss_dssp             GGSCTTEEEECCSSSCCHHHHH
T ss_pred             hcCCCCCEEEeeCCcCCCcCHH
Confidence            7799999999999999987653

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.77  E-value=6.7e-19  Score=177.53  Aligned_cols=180  Identities=23%  Similarity=0.216  Sum_probs=114.5

Q ss_pred             cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc-CCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353          230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR-NLSILKALDMGENELVGNIPTWIGETFSRLMILNLR  308 (596)
Q Consensus       230 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  308 (596)
                      +.++++++.++ .+|..+.  +.++.|+|++|.+++..+..|. .+++|+.|+|++|++. .++...+..+++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            56777777776 4554443  3466777777777766665565 6666666666666665 3333222244555555555


Q ss_pred             CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353          309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN  388 (596)
Q Consensus       309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (596)
                      +|.++...+..|..+++                                                               
T Consensus        97 ~N~l~~~~~~~~~~l~~---------------------------------------------------------------  113 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQA---------------------------------------------------------------  113 (361)
T ss_dssp             SSCCCEECTTTTTTCTT---------------------------------------------------------------
T ss_pred             CCcCCcCCHHHhCCCcC---------------------------------------------------------------
Confidence            55544333333444444                                                               


Q ss_pred             cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc---cCCCCCCEEECCCCcCcccCCccccCCCC
Q 044353          389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI---GVMRSIESLDFSANQLSGQIPQSMSNLSF  465 (596)
Q Consensus       389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  465 (596)
                           |+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|   ..+++|+.|+|++|+++...+..+..++.
T Consensus       114 -----L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  188 (361)
T 2xot_A          114 -----LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPA  188 (361)
T ss_dssp             -----CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCH
T ss_pred             -----CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccH
Confidence                 4555555555555566677778888888888888875444444   56888888888888888766677777776


Q ss_pred             --CCEEecccccCccCCC
Q 044353          466 --LNYLNLSNNNLNGEIP  481 (596)
Q Consensus       466 --L~~L~ls~N~l~~~~~  481 (596)
                        ++.|++++|++.|.|.
T Consensus       189 ~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          189 WVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHHTTEECCSSCEECCHH
T ss_pred             hhcceEEecCCCccCCcC
Confidence              4889999999988765

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=5.1e-18  Score=165.46  Aligned_cols=189  Identities=21%  Similarity=0.296  Sum_probs=109.6

Q ss_pred             ccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC
Q 044353          205 IEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE  284 (596)
Q Consensus       205 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  284 (596)
                      +..+.+..+.+.+..  .+..+++|+.|++++|.+... + .+..+++|+.|++++|.+++..+  +..+++|+.|++++
T Consensus        26 ~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~   99 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDE   99 (291)
T ss_dssp             HHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCS
T ss_pred             HHHHHhcCCCccccc--chhhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCC
Confidence            334445555554322  234556677777777766632 2 35566666666666666664433  56666666666666


Q ss_pred             CcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccc
Q 044353          285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFY  364 (596)
Q Consensus       285 n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~  364 (596)
                      |.+. .++. +. .+++|++|++++|.+++.  ..+..+++                                       
T Consensus       100 n~l~-~~~~-l~-~l~~L~~L~L~~n~i~~~--~~l~~l~~---------------------------------------  135 (291)
T 1h6t_A          100 NKVK-DLSS-LK-DLKKLKSLSLEHNGISDI--NGLVHLPQ---------------------------------------  135 (291)
T ss_dssp             SCCC-CGGG-GT-TCTTCCEEECTTSCCCCC--GGGGGCTT---------------------------------------
T ss_pred             CcCC-CChh-hc-cCCCCCEEECCCCcCCCC--hhhcCCCC---------------------------------------
Confidence            6654 2322 22 344555555555544421  23333444                                       


Q ss_pred             cCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCE
Q 044353          365 ASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIES  444 (596)
Q Consensus       365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  444 (596)
                                                   |+.|++++|.+++.  ..+..+++|+.|+|++|++++..+  +..+++|+.
T Consensus       136 -----------------------------L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~  182 (291)
T 1h6t_A          136 -----------------------------LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN  182 (291)
T ss_dssp             -----------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             -----------------------------CCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCE
Confidence                                         55555555555432  356667777777777777764433  677777777


Q ss_pred             EECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353          445 LDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       445 L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  478 (596)
                      |++++|.+++. + .+..+++|+.|++++|+++.
T Consensus       183 L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          183 LYLSKNHISDL-R-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             EECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEEC
T ss_pred             EECCCCcCCCC-h-hhccCCCCCEEECcCCcccC
Confidence            77777777743 3 36777777777777777754

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.76  E-value=2.5e-18  Score=173.40  Aligned_cols=178  Identities=22%  Similarity=0.209  Sum_probs=138.0

Q ss_pred             CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccC-CCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353          278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC-RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS  356 (596)
Q Consensus       278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  356 (596)
                      +.++++++.+. .+|..+.   +.++.|+|++|.+++..+..+. .+++|+.|++++|.+++..+..|..          
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~----------   86 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVP----------   86 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTT----------
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccC----------
Confidence            46777777776 6666543   4577888888888766666676 7888888888888888655555544          


Q ss_pred             CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccc
Q 044353          357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  436 (596)
                                                        +++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..+..|
T Consensus        87 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~  132 (361)
T 2xot_A           87 ----------------------------------VPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF  132 (361)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             ----------------------------------CCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh
Confidence                                              3447888888898887777789999999999999999998889999


Q ss_pred             cCCCCCCEEECCCCcCcccCCccc---cCCCCCCEEecccccCccCCCCC-CccCc--cccccccCCC-CCCCC
Q 044353          437 GVMRSIESLDFSANQLSGQIPQSM---SNLSFLNYLNLSNNNLNGEIPSS-TQLQS--FGASSFAGND-LCGAP  503 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N~l~~~~~~~~---~~l~~L~~L~ls~N~l~~~~~~~-~~~~~--l~~~~~~~n~-lc~~~  503 (596)
                      ..+++|+.|+|++|+++...+..|   ..+++|+.|+|++|+++...+.. ..++.  ++.+.+.+|| .|++.
T Consensus       133 ~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          133 EDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             TTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred             CCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence            999999999999999997666666   57999999999999998543321 22333  3678899999 78763

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.75  E-value=5.3e-18  Score=154.49  Aligned_cols=156  Identities=20%  Similarity=0.265  Sum_probs=119.2

Q ss_pred             cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCc-cccccccCcccCCCCCCCCccccCCCCCceeeeeEEEec
Q 044353          303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPR-CINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK  381 (596)
Q Consensus       303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (596)
                      +.+++++|.++ .+|..+.  +++++|++++|.+++..+. .+..                                   
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~-----------------------------------   52 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGR-----------------------------------   52 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGG-----------------------------------
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCcccccc-----------------------------------
Confidence            56777777775 4555443  2778888888877744433 2333                                   


Q ss_pred             cceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCcccc
Q 044353          382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMS  461 (596)
Q Consensus       382 ~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  461 (596)
                               +++|++|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..|..+.
T Consensus        53 ---------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  123 (192)
T 1w8a_A           53 ---------LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             ---------CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             ---------CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhh
Confidence                     44578888888888878888999999999999999999988888899999999999999999999999999


Q ss_pred             CCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCC
Q 044353          462 NLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLS  505 (596)
Q Consensus       462 ~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~  505 (596)
                      .+++|++|++++|++.|.++..+....++...+.++. .|+.|..
T Consensus       124 ~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~  168 (192)
T 1w8a_A          124 HLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT
T ss_pred             cCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChH
Confidence            9999999999999999988754333333333444444 6766644

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.75  E-value=2.8e-18  Score=167.30  Aligned_cols=125  Identities=25%  Similarity=0.324  Sum_probs=105.3

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +++|+.|++++|.+... + .+..+++|++|++++|.+++..+  +..+++|+.|++++|.+.+.  ..+..+++|++|+
T Consensus        45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~  118 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS  118 (291)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred             cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence            67899999999999865 3 48889999999999999996544  89999999999999999864  3489999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +++|.+. .++ .+. .+++|++|++++|.+++.  ..+..+++|+.|++++|.++
T Consensus       119 L~~n~i~-~~~-~l~-~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~  169 (291)
T 1h6t_A          119 LEHNGIS-DIN-GLV-HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIS  169 (291)
T ss_dssp             CTTSCCC-CCG-GGG-GCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             CCCCcCC-CCh-hhc-CCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccc
Confidence            9999997 454 333 689999999999999854  56777778888888777776

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2e-17  Score=154.17  Aligned_cols=150  Identities=19%  Similarity=0.244  Sum_probs=128.7

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      +++++++++ .+|..+.  ++|++|++++|.|+++.+..|..+++|++|+|++|+++ .+....|.++++|++|+|++|.
T Consensus        16 v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           16 VDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             EECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSC
T ss_pred             EEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCc
Confidence            677888888 4565554  78999999999999887888999999999999999998 4543489999999999999999


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEccccccc
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIY  156 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~  156 (596)
                      ++...+..|..+++|++|+|++|++.+..+..|..+++|+.|++++|.+++ ++...+..+++|+.|++++|++.
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCcC
Confidence            997777788999999999999999998888999999999999999999985 44444566889999999999874

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.74  E-value=1.9e-17  Score=154.27  Aligned_cols=155  Identities=16%  Similarity=0.243  Sum_probs=93.9

Q ss_pred             cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCC-hhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353          230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIP-TSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR  308 (596)
Q Consensus       230 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  308 (596)
                      +.+++++|.++ .+|..+.  ..+++|++++|.+++..+ ..|..+++|++|++++|.++                    
T Consensus        14 ~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~--------------------   70 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--------------------   70 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC--------------------
T ss_pred             CEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC--------------------
Confidence            45666666665 3444332  344566666666654432 33455555555555555554                    


Q ss_pred             CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353          309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN  388 (596)
Q Consensus       309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (596)
                           +..+..|..+++|++|++++|.+++..+..|..                                          
T Consensus        71 -----~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~------------------------------------------  103 (220)
T 2v70_A           71 -----DIEEGAFEGASGVNEILLTSNRLENVQHKMFKG------------------------------------------  103 (220)
T ss_dssp             -----EECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT------------------------------------------
T ss_pred             -----EECHHHhCCCCCCCEEECCCCccCccCHhHhcC------------------------------------------
Confidence                 333344455555555555555555333333332                                          


Q ss_pred             cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353          389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI  456 (596)
Q Consensus       389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  456 (596)
                        +++|++|+|++|.+++..|..|..+++|++|+|++|++++..|..|..+++|+.|++++|.++...
T Consensus       104 --l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  169 (220)
T 2v70_A          104 --LESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNC  169 (220)
T ss_dssp             --CSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSG
T ss_pred             --CcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCC
Confidence              223555666666666566777778888888888888888777888888888888888888887543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=5.1e-18  Score=181.32  Aligned_cols=104  Identities=23%  Similarity=0.315  Sum_probs=43.8

Q ss_pred             CCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccE
Q 044353          225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMI  304 (596)
Q Consensus       225 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~  304 (596)
                      .+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+  +..+++|+.|+|++|.+. .++ .+. .+++|+.
T Consensus        41 ~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~l~-~l~~L~~  113 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-SLK-DLKKLKS  113 (605)
T ss_dssp             HHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-TST-TCTTCCE
T ss_pred             cCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-hhc-cCCCCCE
Confidence            34444444444444442 22 24444444444444444443322  444444444444444443 222 111 3444444


Q ss_pred             EEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          305 LNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       305 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      |+|++|.+.+.  ..+..+++|+.|++++|.++
T Consensus       114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A          114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCSEEECCSSCCC
T ss_pred             EEecCCCCCCC--ccccCCCccCEEECCCCccC
Confidence            44444444421  22344444444444444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=3.9e-17  Score=174.49  Aligned_cols=190  Identities=22%  Similarity=0.316  Sum_probs=152.7

Q ss_pred             CcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEcc
Q 044353          229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR  308 (596)
Q Consensus       229 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~  308 (596)
                      +..+.+..+.+....+  +..+++|+.|++++|.+... + .+..+++|+.|+|++|.+. .++. + ..+++|+.|+|+
T Consensus        23 l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~-~~~~-l-~~l~~L~~L~Ls   95 (605)
T 1m9s_A           23 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLT-DIKP-L-TNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCC-CCGG-G-GGCTTCCEEECC
T ss_pred             HHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCC-CChh-h-ccCCCCCEEECc
Confidence            3444555555553333  45678999999999999854 3 5889999999999999998 4554 3 379999999999


Q ss_pred             CCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecc
Q 044353          309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYN  388 (596)
Q Consensus       309 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (596)
                      +|.+.+ ++ .+..+++|+.|++++|.+++ + ..+..                                          
T Consensus        96 ~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~~-l-~~l~~------------------------------------------  129 (605)
T 1m9s_A           96 ENKIKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVH------------------------------------------  129 (605)
T ss_dssp             SSCCCC-CT-TSTTCTTCCEEECTTSCCCC-C-GGGGG------------------------------------------
T ss_pred             CCCCCC-Ch-hhccCCCCCEEEecCCCCCC-C-ccccC------------------------------------------
Confidence            999985 34 78899999999999999884 2 22332                                          


Q ss_pred             cccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCE
Q 044353          389 SILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY  468 (596)
Q Consensus       389 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  468 (596)
                        +++|+.|+|++|.+++.  ..+..+++|+.|+|++|++++..|  +..+++|+.|+|++|++++.  ..+..+++|+.
T Consensus       130 --l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~  201 (605)
T 1m9s_A          130 --LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDV  201 (605)
T ss_dssp             --CTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSE
T ss_pred             --CCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCE
Confidence              55688999999999854  678899999999999999986655  88899999999999999864  35888999999


Q ss_pred             EecccccCccC
Q 044353          469 LNLSNNNLNGE  479 (596)
Q Consensus       469 L~ls~N~l~~~  479 (596)
                      |+|++|++++.
T Consensus       202 L~L~~N~l~~~  212 (605)
T 1m9s_A          202 LELFSQECLNK  212 (605)
T ss_dssp             EECCSEEEECC
T ss_pred             EEccCCcCcCC
Confidence            99999998764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.2e-17  Score=163.12  Aligned_cols=264  Identities=15%  Similarity=0.085  Sum_probs=142.0

Q ss_pred             CCCCCEEECcCCccc--ccCCccCcCCCCCCEEECcCCcCccccChhhhhc--------CCCCcEEEccCCeeeeEeCCC
Q 044353           20 FKTLRALDLSNNTVN--GPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLN--------LTQLLVFRAHGNSLVFKINPN   89 (596)
Q Consensus        20 l~~L~~L~ls~n~i~--~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~--------l~~L~~L~L~~n~l~~~~~~~   89 (596)
                      +++|++|||++|+|.  ...+..+   +.++.+.+..|    .++..+|.+        |++|+.|++.+ .++.....+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            888999999999998  3222222   22455555555    445557777        88888888877 677777777


Q ss_pred             CCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcC---cccCChhHHhcCCCCc-EEEcccccccccCCCCCCC
Q 044353           90 WVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRI---SAKIPRGFWNSIFQYD-YLNVSGNQIYGGVPKFDSP  165 (596)
Q Consensus        90 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i---~~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~  165 (596)
                      |..+++|+.+++.+|.+....+..|..+.++..+....+..   ...+....+..+..|+ .+.+....--   +     
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l---~-----  191 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKL---E-----  191 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCH---H-----
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcH---H-----
Confidence            88888888888888877767777777777666666544211   0011222222344554 3333222100   0     


Q ss_pred             CCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCccc-CCCCCCcEEEcccccccccCC
Q 044353          166 SVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCW-MNWPRLRMLNLGNNNFTGSLP  244 (596)
Q Consensus       166 ~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~  244 (596)
                                                 ..+...--...+++.+.+.++-.. .....+ ..+++|+.+++++|.++...+
T Consensus       192 ---------------------------~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~  243 (329)
T 3sb4_A          192 ---------------------------DEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPD  243 (329)
T ss_dssp             ---------------------------HHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred             ---------------------------HHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecH
Confidence                                       000000000123334443332111 000011 124555556665555555555


Q ss_pred             ccCcCCCCCcEEEccCCcccccCChhhcCCCCCC-EEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCC
Q 044353          245 MSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK-ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRL  323 (596)
Q Consensus       245 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  323 (596)
                      .+|.++.+|+.+++.+| +..+.+.+|.++++|+ .+++.+ .++ .++...|..|++|+.+++.+|.++...+.+|.++
T Consensus       244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~-~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVT-AIEFGAFMGCDNLRYVLATGDKITTLGDELFGNG  320 (329)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCC-EECTTTTTTCTTEEEEEECSSCCCEECTTTTCTT
T ss_pred             hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cce-EEchhhhhCCccCCEEEeCCCccCccchhhhcCC
Confidence            55555556666666555 5545555566666665 666655 443 4555555556666666666666655555566666


Q ss_pred             CCCcEEe
Q 044353          324 GSLQILD  330 (596)
Q Consensus       324 ~~L~~L~  330 (596)
                      ++|+.++
T Consensus       321 ~~L~~ly  327 (329)
T 3sb4_A          321 VPSKLIY  327 (329)
T ss_dssp             CCCCEEE
T ss_pred             cchhhhc
Confidence            6666654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=2.2e-16  Score=148.18  Aligned_cols=153  Identities=24%  Similarity=0.242  Sum_probs=132.4

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLN  257 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  257 (596)
                      +.++.+++.+.. ++..+      .++|+.|++++|.+.+..+..|..+++|++|++++|.++...+..|.++++|+.|+
T Consensus        22 ~~v~c~~~~l~~-ip~~~------~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~   94 (229)
T 3e6j_A           22 TTVDCRSKRHAS-VPAGI------PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLD   94 (229)
T ss_dssp             TEEECTTSCCSS-CCSCC------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CEeEccCCCcCc-cCCCC------CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEE
Confidence            456666555542 22221      37899999999999998899999999999999999999877777789999999999


Q ss_pred             ccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          258 LRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       258 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      |++|.++++.+..|..+++|++|++++|++. .+|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus        95 Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           95 LGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIE-RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGG-GCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccc-cCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            9999999888888999999999999999998 8888876 7999999999999999777778999999999999999987


Q ss_pred             cc
Q 044353          338 GT  339 (596)
Q Consensus       338 ~~  339 (596)
                      ..
T Consensus       173 c~  174 (229)
T 3e6j_A          173 CE  174 (229)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.71  E-value=1.7e-17  Score=165.02  Aligned_cols=220  Identities=11%  Similarity=0.073  Sum_probs=152.7

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcc----cccCChhhcCCCCC
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRL----SGIIPTSFRNLSIL  277 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l----~~~~~~~~~~l~~L  277 (596)
                      +++|+++++.. .++.+.+.+|.++++|+.+++++|.+....+.+|.++.++..+.+..+..    ..+...+|.++..|
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L  178 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPL  178 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccccc
Confidence            67888888887 77777777788888888888888887777777787777777666655322    22344556667777


Q ss_pred             C-EEEccCCcccccCchhhhhh---cccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCccc
Q 044353          278 K-ALDMGENELVGNIPTWIGET---FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATT  353 (596)
Q Consensus       278 ~-~L~L~~n~l~~~~~~~~~~~---l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l  353 (596)
                      + .+.+....   .++..++..   ..++..+.+.++-...........+++|+.+++++|.++...+..|.+++     
T Consensus       179 ~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~-----  250 (329)
T 3sb4_A          179 ETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKK-----  250 (329)
T ss_dssp             EEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCT-----
T ss_pred             ceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCC-----
Confidence            6 45554322   344443322   45666666665422211111112368889999998888855455565544     


Q ss_pred             CCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCC-eeeccCccCcccC
Q 044353          354 DSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQ-SLNLSHNLFTGRI  432 (596)
Q Consensus       354 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~  432 (596)
                                                             +|+.+++.+| +....+.+|.++++|+ ++++.+ +++.+.
T Consensus       251 ---------------------------------------~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~  289 (329)
T 3sb4_A          251 ---------------------------------------YLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIE  289 (329)
T ss_dssp             ---------------------------------------TCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEEC
T ss_pred             ---------------------------------------CCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEc
Confidence                                                   4677778777 6656777899999999 999988 677677


Q ss_pred             CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353          433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL  471 (596)
Q Consensus       433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  471 (596)
                      +.+|.++++|+.+++++|+++.+.+.+|.++++|+.++.
T Consensus       290 ~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          290 FGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             TTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             hhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence            788999999999999999999888889999999998864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.70  E-value=4.8e-17  Score=148.97  Aligned_cols=152  Identities=15%  Similarity=0.204  Sum_probs=89.9

Q ss_pred             CCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcc
Q 044353          273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT  352 (596)
Q Consensus       273 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  352 (596)
                      .+++|+.|++++|.+. .+| .+. .+++|++|++++|.++  .+..+..+++|++|++++|.+++..+..+..      
T Consensus        42 ~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~------  110 (197)
T 4ezg_A           42 QMNSLTYITLANINVT-DLT-GIE-YAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSG------  110 (197)
T ss_dssp             HHHTCCEEEEESSCCS-CCT-TGG-GCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTT------
T ss_pred             hcCCccEEeccCCCcc-ChH-HHh-cCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcC------
Confidence            3444555555555554 344 222 3555555555555443  1224555556666666666555444444333      


Q ss_pred             cCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCcc-Cccc
Q 044353          353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGR  431 (596)
Q Consensus       353 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~  431 (596)
                                                            +++|+.|++++|.+++..+..+..+++|++|+|++|+ ++ .
T Consensus       111 --------------------------------------l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~  151 (197)
T 4ezg_A          111 --------------------------------------LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-D  151 (197)
T ss_dssp             --------------------------------------CTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-C
T ss_pred             --------------------------------------CCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-c
Confidence                                                  3335666666666665566667777778888888887 55 4


Q ss_pred             CCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCc
Q 044353          432 IPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       432 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~  477 (596)
                      ++ .+..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus       152 ~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          152 IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC---
T ss_pred             cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCcccC
Confidence            44 577778888888888888753 3 6777788888888888764

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=5.2e-17  Score=155.76  Aligned_cols=168  Identities=19%  Similarity=0.318  Sum_probs=105.2

Q ss_pred             CCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeC
Q 044353          252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDV  331 (596)
Q Consensus       252 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  331 (596)
                      ++..++++++.+++..  .+..+++|+.|++++|.+. .++ .+. .+++|++|++++|.+++..+  +..+++|+.|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~-~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQ-FFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGG-GCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHh-hCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            3444455555555332  3445555555555555554 444 222 45566666666666553322  556666666666


Q ss_pred             CCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCcc
Q 044353          332 AYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVE  411 (596)
Q Consensus       332 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~  411 (596)
                      ++|++++ +|...                                              .++|+.|++++|.+++ + ..
T Consensus        93 ~~N~l~~-l~~~~----------------------------------------------~~~L~~L~L~~N~l~~-~-~~  123 (263)
T 1xeu_A           93 NRNRLKN-LNGIP----------------------------------------------SACLSRLFLDNNELRD-T-DS  123 (263)
T ss_dssp             CSSCCSC-CTTCC----------------------------------------------CSSCCEEECCSSCCSB-S-GG
T ss_pred             CCCccCC-cCccc----------------------------------------------cCcccEEEccCCccCC-C-hh
Confidence            6666652 22100                                              0236777777777764 2 34


Q ss_pred             ccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          412 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       412 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      +..+++|+.|+|++|++++. + .++.+++|+.|++++|++++.  ..+..+++|+.|++++|++++.
T Consensus       124 l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          124 LIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             GTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             hcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            77788888888888888743 3 577888888888888888865  5678888888888888888765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=5.2e-19  Score=187.89  Aligned_cols=85  Identities=25%  Similarity=0.356  Sum_probs=49.1

Q ss_pred             ccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC-CccccCCCCCCEEecc
Q 044353          394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI-PQSMSNLSFLNYLNLS  472 (596)
Q Consensus       394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~ls  472 (596)
                      |+.|+|++|.++ .+|..|..+++|+.|+|++|++++ +| .++.+++|+.|+|++|++++.. |..+..+++|+.|+++
T Consensus       465 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~  541 (567)
T 1dce_A          465 VTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ  541 (567)
T ss_dssp             CCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECT
T ss_pred             CcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEec
Confidence            555555555555 455555556666666666666653 44 4555666666666666665544 5555666666666666


Q ss_pred             cccCccCCC
Q 044353          473 NNNLNGEIP  481 (596)
Q Consensus       473 ~N~l~~~~~  481 (596)
                      +|++++.++
T Consensus       542 ~N~l~~~~~  550 (567)
T 1dce_A          542 GNSLCQEEG  550 (567)
T ss_dssp             TSGGGGSSS
T ss_pred             CCcCCCCcc
Confidence            666655544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.69  E-value=6.7e-17  Score=147.11  Aligned_cols=133  Identities=20%  Similarity=0.252  Sum_probs=108.8

Q ss_pred             cEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEecc
Q 044353          303 MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKG  382 (596)
Q Consensus       303 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (596)
                      +.++++++.++ .+|..+.  ++|++|++++|.++ .+|..+..                                    
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~------------------------------------   52 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSN------------------------------------   52 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGG------------------------------------
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhc------------------------------------
Confidence            46777777776 4554433  57788888888877 55555544                                    


Q ss_pred             ceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccC
Q 044353          383 FLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN  462 (596)
Q Consensus       383 ~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  462 (596)
                              +++|+.|++++|.+++..+..|.++++|++|+|++|++++..+..|..+++|+.|+|++|.++...+..|..
T Consensus        53 --------l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~  124 (193)
T 2wfh_A           53 --------YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFND  124 (193)
T ss_dssp             --------CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT
T ss_pred             --------ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhc
Confidence                    344788888888888777788999999999999999999888889999999999999999999777778999


Q ss_pred             CCCCCEEecccccCccCCCCC
Q 044353          463 LSFLNYLNLSNNNLNGEIPSS  483 (596)
Q Consensus       463 l~~L~~L~ls~N~l~~~~~~~  483 (596)
                      +++|+.|++++|++.|.|...
T Consensus       125 l~~L~~L~L~~N~~~C~c~l~  145 (193)
T 2wfh_A          125 LSALSHLAIGANPLYCDCNMQ  145 (193)
T ss_dssp             CTTCCEEECCSSCEECSGGGH
T ss_pred             CccccEEEeCCCCeecCCcCH
Confidence            999999999999999988643

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=1.8e-17  Score=158.98  Aligned_cols=123  Identities=25%  Similarity=0.343  Sum_probs=77.9

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEc
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDM  282 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  282 (596)
                      .+++.++++++.+++..  .+..+++|+.|++++|.++ .++ .+..+++|+.|++++|.+++..+  +..+++|+.|++
T Consensus        19 ~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           19 ANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEEC
Confidence            45666677777776533  4566777777777777776 334 56677777777777777775544  677777777777


Q ss_pred             cCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          283 GENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       283 ~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      ++|++. .+|....   ++|++|++++|.+++.  ..+..+++|+.|++++|+++
T Consensus        93 ~~N~l~-~l~~~~~---~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           93 NRNRLK-NLNGIPS---ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             CSSCCS-CCTTCCC---SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCC
T ss_pred             CCCccC-CcCcccc---CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCC
Confidence            777775 3443221   5666666666666532  23555666666666666555

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.68  E-value=1.9e-16  Score=145.02  Aligned_cols=153  Identities=25%  Similarity=0.289  Sum_probs=81.4

Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLM  303 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  303 (596)
                      ..+++|+.|++++|.++ .+| .+..+++|++|++++|.+..  +..+..+++|                         +
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L-------------------------~   91 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNL-------------------------E   91 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTC-------------------------C
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCC-------------------------C
Confidence            34455566666666555 333 34555555555555554431  1234444444                         4


Q ss_pred             EEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccc
Q 044353          304 ILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGF  383 (596)
Q Consensus       304 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (596)
                      +|++++|.+++..+..+..+++|++|++++|.+++..|..+..                                     
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-------------------------------------  134 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-------------------------------------  134 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-------------------------------------
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-------------------------------------
Confidence            5555544444434444555555555555555555433333332                                     


Q ss_pred             eeecccccccccEEEccCCc-ccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          384 LVEYNSILNLVRSIDISKNN-FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       384 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                             +++|+.|++++|. ++ .++ .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus       135 -------l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          135 -------LPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             -------CSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             -------CCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence                   2235555555555 33 333 46667777777777777764 33 5677777777777777765

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.66  E-value=5.2e-15  Score=150.23  Aligned_cols=268  Identities=12%  Similarity=0.102  Sum_probs=204.1

Q ss_pred             cCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCcc
Q 044353           18 GRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLA   97 (596)
Q Consensus        18 ~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~   97 (596)
                      .-+..++.+.+.+ .++.+...+|.++ +|+.+.+..+ ++ .++..+|.++ +|+.+.+.. .+......+|..+.+|+
T Consensus       110 ~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~-~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LK-SIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CC-EECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-cc-EECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            3457788888865 4565667788886 7999998877 65 7777788885 699999876 67777778899999999


Q ss_pred             EEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCC
Q 044353           98 FLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG  177 (596)
Q Consensus        98 ~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~  177 (596)
                      .+++.+|.+.......|. +.+|+.+.+..+ ++ .++...|..+++|+.+++..+ ++.                    
T Consensus       184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~--------------------  239 (401)
T 4fdw_A          184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VST--------------------  239 (401)
T ss_dssp             EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCE--------------------
T ss_pred             eeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccC--------------------
Confidence            999998888877677776 688999998755 55 566666677888999888764 211                    


Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccc-----ccCCccCcCCCC
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT-----GSLPMSIGALNS  252 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~  252 (596)
                          +....|            .. .+|+.+.+. +.+..+...+|.++++|+.+++.++.+.     ...+.+|.++++
T Consensus       240 ----I~~~aF------------~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          240 ----IGQEAF------------RE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             ----ECTTTT------------TT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             ----cccccc------------cc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence                111111            11 468888884 4566677788999999999999887664     466778999999


Q ss_pred             CcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCC-CCcEEeC
Q 044353          253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLG-SLQILDV  331 (596)
Q Consensus       253 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l  331 (596)
                      |+.+++.+ .+..+...+|.++++|+.+.+..+ ++ .+....|..+ +|+.+++.+|......+..|.+++ +++.|.+
T Consensus       302 L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~-~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          302 LARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VT-QINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             CCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CC-EECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             CCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-cc-EEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence            99999984 577788889999999999999665 54 6777777778 999999999988766667787775 7888888


Q ss_pred             CCCcCc
Q 044353          332 AYNSLS  337 (596)
Q Consensus       332 ~~n~l~  337 (596)
                      ..+.+.
T Consensus       378 p~~~~~  383 (401)
T 4fdw_A          378 PAESVE  383 (401)
T ss_dssp             CGGGHH
T ss_pred             CHHHHH
Confidence            876544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.65  E-value=9.4e-15  Score=149.05  Aligned_cols=335  Identities=11%  Similarity=0.058  Sum_probs=161.1

Q ss_pred             ccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcch
Q 044353           33 VNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPL  112 (596)
Q Consensus        33 i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  112 (596)
                      ++.+-..+|.+|.+|+.+.|..+ ++ .++..+|.+|.+|+.+++..+ ++.....+|..+..|+.+.+..+ +......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~  134 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVE  134 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecce
Confidence            33344455555555555555433 43 455555555555555555433 44444445555555555544432 2223334


Q ss_pred             hhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccc
Q 044353          113 WLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIF  192 (596)
Q Consensus       113 ~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~  192 (596)
                      .|..+..+........  . .+....+..+.+|+.+.+..+...                         +..        
T Consensus       135 aF~~~~~~~~~~~~~~--~-~i~~~aF~~c~~L~~i~l~~~~~~-------------------------I~~--------  178 (394)
T 4fs7_A          135 AFKGCDFKEITIPEGV--T-VIGDEAFATCESLEYVSLPDSMET-------------------------LHN--------  178 (394)
T ss_dssp             TTTTCCCSEEECCTTC--C-EECTTTTTTCTTCCEEECCTTCCE-------------------------ECT--------
T ss_pred             eeecccccccccCccc--c-ccchhhhcccCCCcEEecCCccce-------------------------ecc--------
Confidence            4444433322222111  1 122233344555665555433210                         000        


Q ss_pred             cccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhc
Q 044353          193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR  272 (596)
Q Consensus       193 ~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  272 (596)
                          ..+..+.+|+.+.+..+ +..+...+|.++..|+.+.+..+...  +.+.+.....|+.+.+... +..+...+|.
T Consensus       179 ----~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~  250 (394)
T 4fs7_A          179 ----GLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFY  250 (394)
T ss_dssp             ----TTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTT
T ss_pred             ----ccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCC-ceeccccccc
Confidence                01112344555555443 33334445555555555555443322  1222223345555555433 2224445555


Q ss_pred             CCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcc
Q 044353          273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMAT  352 (596)
Q Consensus       273 ~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  352 (596)
                      ++..++.+.+..+..  .+....+..+..++.+......+   ....|..+.+|+.+.+..+ ++.....+|.++.+   
T Consensus       251 ~~~~l~~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~---  321 (394)
T 4fs7_A          251 GCTDLESISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTS---  321 (394)
T ss_dssp             TCSSCCEEEECCTTC--EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTTTTTCTT---
T ss_pred             ccccceeEEcCCCcc--eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhhhcCCCC---
Confidence            556666665555432  23333343455555555544322   1234555566666666543 33233334444333   


Q ss_pred             cCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC
Q 044353          353 TDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI  432 (596)
Q Consensus       353 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  432 (596)
                                                               |+.++|..+ ++.....+|.+|++|+++++..+ ++.+.
T Consensus       322 -----------------------------------------L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          322 -----------------------------------------LVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             -----------------------------------------CCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             -----------------------------------------CCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence                                                     344444322 33344567777888888888766 55566


Q ss_pred             CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353          433 PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       433 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  469 (596)
                      ..+|.++++|+.+++..+ +. .+..+|.++++|+.+
T Consensus       359 ~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred             HHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence            677888888888888654 33 234567777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.65  E-value=6.6e-17  Score=177.20  Aligned_cols=218  Identities=18%  Similarity=0.165  Sum_probs=92.3

Q ss_pred             CCccEEeCcCCcCCCCCCcccCCCCCC-----cEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCC
Q 044353          203 KNIEFLKLSKNHFSEDIPDCWMNWPRL-----RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSIL  277 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~~~~~~~~~l~~L-----~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  277 (596)
                      +.++.|++.+|.+... +..+.....|     ..+++..|.+. ..++.+..++.|+.|+|++|.+. .+|..+..+++|
T Consensus       173 ~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L  249 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA-NQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFL  249 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSC
T ss_pred             CccceEEeeCCCCCcc-hhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCC
Confidence            3456666666665542 2222111112     22223333333 44666667777777777777776 344445567777


Q ss_pred             CEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          278 KALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       278 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      ++|+|++|.++ .+|..+. .+++|++|+|++|.++ .+|..+..+++|++|+|++|.++ .+|..|+.++         
T Consensus       250 ~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~---------  316 (727)
T 4b8c_D          250 TRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLC---------  316 (727)
T ss_dssp             SCCBCTTSCCS-CCCGGGG-GGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCT---------
T ss_pred             CEEEeeCCcCc-ccChhhh-CCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCC---------
Confidence            77777777776 6776654 5777777777777777 55667777777777777777776 5565554433         


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCccc-CCeeeccCccCcccCCccc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQG-LQSLNLSHNLFTGRIPDNI  436 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~-L~~L~Ls~n~l~~~~~~~~  436 (596)
                                                         +|+.|+|++|.+++.+|..+..+.. +..|+|++|.+++.+|.  
T Consensus       317 -----------------------------------~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~--  359 (727)
T 4b8c_D          317 -----------------------------------NLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH--  359 (727)
T ss_dssp             -----------------------------------TCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC--
T ss_pred             -----------------------------------CccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc--
Confidence                                               3666777777777666666544322 22366777777766654  


Q ss_pred             cCCCCCCEEECCCC--------cCcccCCccccCCCCCCEEecccccCc
Q 044353          437 GVMRSIESLDFSAN--------QLSGQIPQSMSNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       437 ~~l~~L~~L~Ls~N--------~l~~~~~~~~~~l~~L~~L~ls~N~l~  477 (596)
                          .|+.|++++|        .+....+..+..+..+....+++|-+.
T Consensus       360 ----~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          360 ----ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC  404 (727)
T ss_dssp             ----C-----------------------------------------CCC
T ss_pred             ----ccceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence                3445555555        333333344455555666666777664

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.65  E-value=1e-14  Score=148.08  Aligned_cols=264  Identities=11%  Similarity=0.073  Sum_probs=206.6

Q ss_pred             cCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCc
Q 044353           42 GQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLY  121 (596)
Q Consensus        42 ~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~  121 (596)
                      ..+..++.+.+.++ ++ .++..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+.......|.+|++|+
T Consensus       110 ~~~~~l~~i~ip~~-i~-~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~  183 (401)
T 4fdw_A          110 EILKGYNEIILPNS-VK-SIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK  183 (401)
T ss_dssp             EECSSCSEEECCTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred             EecCCccEEEECCc-cC-EehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence            34578899999875 55 7777799986 7999999876 777777888885 799999986 67777788899999999


Q ss_pred             EEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCC
Q 044353          122 YLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENF  201 (596)
Q Consensus       122 ~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~  201 (596)
                      .+++.+|.++ .++...+. +.+|+.+.+..+ +...                        ..            ..+..
T Consensus       184 ~l~l~~n~l~-~I~~~aF~-~~~L~~l~lp~~-l~~I------------------------~~------------~aF~~  224 (401)
T 4fdw_A          184 KADLSKTKIT-KLPASTFV-YAGIEEVLLPVT-LKEI------------------------GS------------QAFLK  224 (401)
T ss_dssp             EEECTTSCCS-EECTTTTT-TCCCSEEECCTT-CCEE------------------------CT------------TTTTT
T ss_pred             eeecCCCcce-EechhhEe-ecccCEEEeCCc-hhee------------------------hh------------hHhhC
Confidence            9999999987 56666555 578999988644 3211                        11            22334


Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCccc-----ccCChhhcCCCC
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLS-----GIIPTSFRNLSI  276 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~  276 (596)
                      +++|+.+++..+ ++.+...+|.+ ++|+.+.+. +.++.....+|.++++|+.+++.++.+.     .+.+.+|.++++
T Consensus       225 ~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~  301 (401)
T 4fdw_A          225 TSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPK  301 (401)
T ss_dssp             CTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTT
T ss_pred             CCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCcc
Confidence            788999999875 66667778888 789999994 4577677889999999999999988765     577889999999


Q ss_pred             CCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccc-cCcccCC
Q 044353          277 LKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS-AMATTDS  355 (596)
Q Consensus       277 L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~l~l  355 (596)
                      |+.+++.+ .+. .++...|..|.+|+.+.+..+ ++.+...+|.++ +|+.+++.+|......+..|..++ .+..+.+
T Consensus       302 L~~l~l~~-~i~-~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~v  377 (401)
T 4fdw_A          302 LARFEIPE-SIR-ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRV  377 (401)
T ss_dssp             CCEECCCT-TCC-EECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEE
T ss_pred             CCeEEeCC-ceE-EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEe
Confidence            99999984 465 788888878999999999655 665667789999 999999999988766667777764 4555555


Q ss_pred             CC
Q 044353          356 SD  357 (596)
Q Consensus       356 ~~  357 (596)
                      ..
T Consensus       378 p~  379 (401)
T 4fdw_A          378 PA  379 (401)
T ss_dssp             CG
T ss_pred             CH
Confidence            43

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.64  E-value=8.5e-18  Score=178.56  Aligned_cols=197  Identities=19%  Similarity=0.176  Sum_probs=159.9

Q ss_pred             CCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc-------------ccccCChhhcCCCCCCEEE-ccCCcccc
Q 044353          224 MNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR-------------LSGIIPTSFRNLSILKALD-MGENELVG  289 (596)
Q Consensus       224 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~l~~  289 (596)
                      ..++.|+.|++++|.++ .+|..++.+++|+.|++++|.             ..+..|..+..+++|+.|+ ++.|.+. 
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence            56788999999999998 789999999999999997775             4556677888888898888 6666543 


Q ss_pred             cCchhhh-----h--hcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCc
Q 044353          290 NIPTWIG-----E--TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGI  362 (596)
Q Consensus       290 ~~~~~~~-----~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~  362 (596)
                      .++....     .  ....|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+               
T Consensus       424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l---------------  485 (567)
T 1dce_A          424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL---------------  485 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC---------------
T ss_pred             hhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC---------------
Confidence            3322110     0  12368999999999985 665 889999999999999998 778777654               


Q ss_pred             cccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC-CccccCCCC
Q 044353          363 FYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRS  441 (596)
Q Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~  441 (596)
                                                   ++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..++.+++
T Consensus       486 -----------------------------~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~  534 (567)
T 1dce_A          486 -----------------------------RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPR  534 (567)
T ss_dssp             -----------------------------TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTT
T ss_pred             -----------------------------CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCC
Confidence                                         448899999999995 66 8999999999999999999776 999999999


Q ss_pred             CCEEECCCCcCcccCCc---cccCCCCCCEEec
Q 044353          442 IESLDFSANQLSGQIPQ---SMSNLSFLNYLNL  471 (596)
Q Consensus       442 L~~L~Ls~N~l~~~~~~---~~~~l~~L~~L~l  471 (596)
                      |+.|+|++|.+++.+|.   .+..+++|+.|++
T Consensus       535 L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          535 LVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99999999999976553   2345899999875

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.64  E-value=1e-14  Score=148.76  Aligned_cols=318  Identities=8%  Similarity=0.010  Sum_probs=217.9

Q ss_pred             CccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353           57 LNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR  136 (596)
Q Consensus        57 i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  136 (596)
                      ++ .|+..+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++.++ ++......|..++.|+.+.+..+ +. .+..
T Consensus        59 Vt-sIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~-~i~~  133 (394)
T 4fs7_A           59 VV-SIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LK-SIGV  133 (394)
T ss_dssp             EE-EECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CC-EECT
T ss_pred             Ee-EhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-ee-eecc
Confidence            44 67777899999999999975 477777788999999999999754 66566777888888888776544 32 2333


Q ss_pred             hHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCC
Q 044353          137 GFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS  216 (596)
Q Consensus       137 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~  216 (596)
                      ..+..+. +.........                         ..+.            ..++..+++|+.+.+..+. .
T Consensus       134 ~aF~~~~-~~~~~~~~~~-------------------------~~i~------------~~aF~~c~~L~~i~l~~~~-~  174 (394)
T 4fs7_A          134 EAFKGCD-FKEITIPEGV-------------------------TVIG------------DEAFATCESLEYVSLPDSM-E  174 (394)
T ss_dssp             TTTTTCC-CSEEECCTTC-------------------------CEEC------------TTTTTTCTTCCEEECCTTC-C
T ss_pred             eeeeccc-ccccccCccc-------------------------cccc------------hhhhcccCCCcEEecCCcc-c
Confidence            3333332 2222111110                         0011            1234447889999987653 4


Q ss_pred             CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhh
Q 044353          217 EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG  296 (596)
Q Consensus       217 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  296 (596)
                      .+...+|.++.+|+.+.+..+ ++.....+|.++..|+.+.+..+... +. ..+....+|+.+.+.... . .+....+
T Consensus       175 ~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~-i~-~~~~~~~~l~~i~ip~~~-~-~i~~~~f  249 (394)
T 4fs7_A          175 TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY-LG-DFALSKTGVKNIIIPDSF-T-ELGKSVF  249 (394)
T ss_dssp             EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE-EC-TTTTTTCCCCEEEECTTC-C-EECSSTT
T ss_pred             eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE-ee-hhhcccCCCceEEECCCc-e-ecccccc
Confidence            456678888999999998776 55566778888889988888776544 32 333455678888886543 2 4555556


Q ss_pred             hhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeee
Q 044353          297 ETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDA  376 (596)
Q Consensus       297 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~  376 (596)
                      ..+..++.+.+..+... .....|..+..++.+....+.+.   ...+..                              
T Consensus       250 ~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~------------------------------  295 (394)
T 4fs7_A          250 YGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYG------------------------------  295 (394)
T ss_dssp             TTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTT------------------------------
T ss_pred             cccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccc------------------------------
Confidence            57888999888776543 55667888888888877654322   122322                              


Q ss_pred             EEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccC
Q 044353          377 LLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQI  456 (596)
Q Consensus       377 ~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  456 (596)
                                    +.+|+.+.+..+ +......+|.++++|++++|..+ ++.+...+|.++.+|+.+++..+ ++.+.
T Consensus       296 --------------~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~  358 (394)
T 4fs7_A          296 --------------CSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIG  358 (394)
T ss_dssp             --------------CTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEEC
T ss_pred             --------------cccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEeh
Confidence                          444666666544 44455677889999999999755 66566788899999999999877 77677


Q ss_pred             CccccCCCCCCEEecccc
Q 044353          457 PQSMSNLSFLNYLNLSNN  474 (596)
Q Consensus       457 ~~~~~~l~~L~~L~ls~N  474 (596)
                      ..+|.++++|+.+++..+
T Consensus       359 ~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          359 ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTBTTCTTCCEEEEEGG
T ss_pred             HHHhhCCCCCCEEEECCC
Confidence            788999999999998765

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.63  E-value=1.1e-16  Score=175.42  Aligned_cols=191  Identities=20%  Similarity=0.211  Sum_probs=122.3

Q ss_pred             EeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcc
Q 044353          208 LKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL  287 (596)
Q Consensus       208 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  287 (596)
                      +++..|.+. ..+..+..++.|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|..+++|++|+|++|.+
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l  282 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL  282 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcC
Confidence            344444443 45777899999999999999998 67777779999999999999999 7788899999999999999999


Q ss_pred             cccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCC
Q 044353          288 VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASS  367 (596)
Q Consensus       288 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~  367 (596)
                      + .+|..+. .+++|++|+|++|.++ .+|..|..+++|+.|+|++|.+++.+|..+..+...                 
T Consensus       283 ~-~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~-----------------  342 (727)
T 4b8c_D          283 T-SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVT-----------------  342 (727)
T ss_dssp             S-SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHH-----------------
T ss_pred             C-ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchh-----------------
Confidence            8 8898877 7999999999999998 778889999999999999999998888777553221                 


Q ss_pred             CCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCc--------cCcccCCccccCC
Q 044353          368 GDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHN--------LFTGRIPDNIGVM  439 (596)
Q Consensus       368 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n--------~l~~~~~~~~~~l  439 (596)
                                                +..+++++|.+++.+|..      |+.|++++|        .+.+..+..+..+
T Consensus       343 --------------------------~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l  390 (727)
T 4b8c_D          343 --------------------------GLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDL  390 (727)
T ss_dssp             --------------------------HHHHHHHHCCCCCCCCCC------------------------------------
T ss_pred             --------------------------hhHHhhccCcccCcCccc------cceeEeecccccccccCCccccccchhhcc
Confidence                                      223677788887766654      455666666        3333444445566


Q ss_pred             CCCCEEECCCCcCc
Q 044353          440 RSIESLDFSANQLS  453 (596)
Q Consensus       440 ~~L~~L~Ls~N~l~  453 (596)
                      ..++...+++|-+.
T Consensus       391 ~~~~~~~ls~Nil~  404 (727)
T 4b8c_D          391 AKRTFTVLSYNTLC  404 (727)
T ss_dssp             -----------CCC
T ss_pred             cccceeeeeccccc
Confidence            66777777888765

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.63  E-value=2.3e-15  Score=136.97  Aligned_cols=131  Identities=16%  Similarity=0.171  Sum_probs=108.3

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCc-cCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPL-SLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +++++|+++ .+|..+..  ++++|++++|.+++..+. .|..+++|++|+|++|++++..+. .|.++++|++|++++|
T Consensus        13 l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           13 VDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPN-AFEGASHIQELQLGEN   88 (192)
T ss_dssp             EECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTT-TTTTCTTCCEEECCSC
T ss_pred             EEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHh-HcCCcccCCEEECCCC
Confidence            688888885 56665543  889999999999876654 488899999999999998854454 8888999999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCCh
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPR  136 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~  136 (596)
                      .+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..+.
T Consensus        89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            99888888888899999999999999888888888889999999999988766553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=4.3e-15  Score=133.36  Aligned_cols=93  Identities=18%  Similarity=0.193  Sum_probs=78.5

Q ss_pred             cccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEe
Q 044353          391 LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN  470 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  470 (596)
                      +++|++|++++|.+++..+..|..+++|++|+|++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A           51 LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             cccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEE
Confidence            33467777777777766666788899999999999999977777789999999999999999977777788999999999


Q ss_pred             cccccCccCCCCC
Q 044353          471 LSNNNLNGEIPSS  483 (596)
Q Consensus       471 ls~N~l~~~~~~~  483 (596)
                      +++|++.|.++..
T Consensus       131 l~~N~~~~~~~~l  143 (177)
T 2o6r_A          131 LHTNPWDCSCPRI  143 (177)
T ss_dssp             CCSSCBCCCHHHH
T ss_pred             ecCCCeeccCccH
Confidence            9999999887743

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=3.2e-15  Score=132.99  Aligned_cols=137  Identities=21%  Similarity=0.162  Sum_probs=116.4

Q ss_pred             CCCccEEeCcCCcCC-CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353          202 SKNIEFLKLSKNHFS-EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  280 (596)
                      +++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            578999999999997 56787888999999999999999865  778899999999999999998788888889999999


Q ss_pred             EccCCcccccCch-hhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCCCCcCcccCCc
Q 044353          281 DMGENELVGNIPT-WIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVAYNSLSGTIPR  342 (596)
Q Consensus       281 ~L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~  342 (596)
                      ++++|.++ .++. ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       101 ~Ls~N~l~-~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          101 NLSGNKLK-DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             ECBSSSCC-SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             eccCCccC-cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            99999997 5542 333378999999999999986544   47889999999999999887 4443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.59  E-value=2.1e-15  Score=134.18  Aligned_cols=87  Identities=20%  Similarity=0.269  Sum_probs=59.9

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccC-CccccCCCCCCEEECCCCcCcccCC---ccccCCCCCC
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRI-PDNIGVMRSIESLDFSANQLSGQIP---QSMSNLSFLN  467 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~  467 (596)
                      ++|+.|++++|.+++.+|..+..+++|+.|+|++|++++.. +..+..+++|+.|++++|.+++..+   ..+..+++|+
T Consensus        71 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~  150 (168)
T 2ell_A           71 PKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLT  150 (168)
T ss_dssp             SSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCC
T ss_pred             CCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCc
Confidence            33555666666665455666666777777777777777432 2567777888888888888875554   4677788888


Q ss_pred             EEecccccCcc
Q 044353          468 YLNLSNNNLNG  478 (596)
Q Consensus       468 ~L~ls~N~l~~  478 (596)
                      .|++++|.+..
T Consensus       151 ~L~l~~n~~~~  161 (168)
T 2ell_A          151 YLDGYDREDQE  161 (168)
T ss_dssp             EETTEETTSCB
T ss_pred             EecCCCCChhh
Confidence            88888887653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=1.9e-15  Score=131.51  Aligned_cols=129  Identities=21%  Similarity=0.259  Sum_probs=100.1

Q ss_pred             cccccEEEccCCcCc-CcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeE
Q 044353          299 FSRLMILNLRSNKFH-GDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDAL  377 (596)
Q Consensus       299 l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~  377 (596)
                      .++++.|++++|.++ +.+|..+..+++|+.|++++|.+++.  ..+..                               
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-------------------------------   62 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-------------------------------   62 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-------------------------------
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-------------------------------
Confidence            467888888888877 56777777888888888888887743  22222                               


Q ss_pred             EEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCccc-CCccccCCCCCCEEECCCCcCcccC
Q 044353          378 LVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR-IPDNIGVMRSIESLDFSANQLSGQI  456 (596)
Q Consensus       378 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~  456 (596)
                                   +++|+.|++++|.+++.+|..+..+++|++|++++|++++. .+..++.+++|++|++++|.+++..
T Consensus        63 -------------l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~  129 (149)
T 2je0_A           63 -------------LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLN  129 (149)
T ss_dssp             -------------CTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGST
T ss_pred             -------------CCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchH
Confidence                         45578888888888866777777788999999999998853 3477888999999999999998766


Q ss_pred             C---ccccCCCCCCEEeccc
Q 044353          457 P---QSMSNLSFLNYLNLSN  473 (596)
Q Consensus       457 ~---~~~~~l~~L~~L~ls~  473 (596)
                      +   ..+..+++|+.||+++
T Consensus       130 ~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          130 DYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             THHHHHHHHCTTCCEETTBC
T ss_pred             HHHHHHHHHCCCcccccCCC
Confidence            5   5788889999998864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=9.6e-15  Score=132.80  Aligned_cols=125  Identities=22%  Similarity=0.229  Sum_probs=60.4

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      +++++|+++ .+|..+.  ++|++|++++|.++ .+|..|..+++|++|+|++|+|+ .++...|.++++|++|+|++|.
T Consensus        15 l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N~   89 (193)
T 2wfh_A           15 VRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNR   89 (193)
T ss_dssp             EECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCCc
Confidence            344455544 2333222  34555555555554 33444555555555555555554 3333345555555555555555


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCc
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRIS  131 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  131 (596)
                      ++...+..|..+++|++|+|++|.++...+..|..+++|+.|++++|.+.
T Consensus        90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            55444444555555555555555554444444444555555555555443

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.56  E-value=2e-14  Score=129.01  Aligned_cols=130  Identities=18%  Similarity=0.159  Sum_probs=94.2

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      +++++|+++. +|..+  .++|++|++++|.+++..+..|..+++|++|++++|+++ .++...|.++++|++|++++|.
T Consensus        12 l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           12 IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             EECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSC
T ss_pred             EEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCCC
Confidence            5667777763 34332  367888888888887666666777888888888888877 5555467778888888888888


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIP  135 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~  135 (596)
                      ++...+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            776666667777788888888887776666666777788888888887765444

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.56  E-value=7.6e-15  Score=127.66  Aligned_cols=127  Identities=20%  Similarity=0.202  Sum_probs=95.4

Q ss_pred             CCCccEEeCcCCcCC-CCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEE
Q 044353          202 SKNIEFLKLSKNHFS-EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKAL  280 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  280 (596)
                      .++++.|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            357888888888887 56777778888888888888888754  667788888888888888887677777778888888


Q ss_pred             EccCCcccccCc--hhhhhhcccccEEEccCCcCcCcCC---cccCCCCCCcEEeCC
Q 044353          281 DMGENELVGNIP--TWIGETFSRLMILNLRSNKFHGDFP---IQLCRLGSLQILDVA  332 (596)
Q Consensus       281 ~L~~n~l~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~l~  332 (596)
                      ++++|.++ .++  ..+. .+++|++|++++|.+++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~-~~~~~~~~~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIK-DLSTIEPLK-KLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCC-SHHHHGGGG-GCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCC-ChHHHHHHh-hCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            88888876 333  3333 67778888888887775444   356777777777765

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.52  E-value=4.8e-14  Score=125.34  Aligned_cols=92  Identities=20%  Similarity=0.192  Sum_probs=85.1

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL  471 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  471 (596)
                      +.|+.|+|++|.+++..|..|.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus        30 ~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           30 TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeCHHHhcCCCCCCEEEe
Confidence            34899999999999888999999999999999999999877888899999999999999999888888999999999999


Q ss_pred             ccccCccCCCCC
Q 044353          472 SNNNLNGEIPSS  483 (596)
Q Consensus       472 s~N~l~~~~~~~  483 (596)
                      ++|++.|.++..
T Consensus       110 ~~N~~~c~c~~l  121 (170)
T 3g39_A          110 LNNPWDCACSDI  121 (170)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCCCCCchhH
Confidence            999999988744

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=7.2e-14  Score=125.15  Aligned_cols=84  Identities=14%  Similarity=0.197  Sum_probs=56.7

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCc--cccCCCCCCEEECCCCcCcccCCc----cccCCCC
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPD--NIGVMRSIESLDFSANQLSGQIPQ----SMSNLSF  465 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~----~~~~l~~  465 (596)
                      ++|+.|++++|.+++..+..|..+++|++|+|++|+++ .+|.  .+..+++|+.|++++|.++. .|.    .+..+++
T Consensus        64 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~  141 (176)
T 1a9n_A           64 RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQ  141 (176)
T ss_dssp             SSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTT
T ss_pred             CCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCc
Confidence            34556666666665444444567777777777777775 4444  67777788888888888773 344    3777788


Q ss_pred             CCEEecccccCc
Q 044353          466 LNYLNLSNNNLN  477 (596)
Q Consensus       466 L~~L~ls~N~l~  477 (596)
                      |+.||+++|...
T Consensus       142 L~~Ld~~~n~~~  153 (176)
T 1a9n_A          142 VRVLDFQKVKLK  153 (176)
T ss_dssp             CSEETTEECCHH
T ss_pred             cceeCCCcCCHH
Confidence            888888877654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.48  E-value=1.7e-13  Score=122.21  Aligned_cols=92  Identities=21%  Similarity=0.209  Sum_probs=83.8

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEec
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNL  471 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l  471 (596)
                      +.|+.|+|++|.+++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34899999999999888999999999999999999999777777899999999999999999777777999999999999


Q ss_pred             ccccCccCCCCC
Q 044353          472 SNNNLNGEIPSS  483 (596)
Q Consensus       472 s~N~l~~~~~~~  483 (596)
                      ++|++.|.++..
T Consensus       113 ~~N~~~c~~~~~  124 (174)
T 2r9u_A          113 YNNPWDCECRDI  124 (174)
T ss_dssp             CSSCBCTTBGGG
T ss_pred             CCCCcccccccH
Confidence            999999887644

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.4e-13  Score=123.31  Aligned_cols=130  Identities=17%  Similarity=0.152  Sum_probs=108.3

Q ss_pred             CCCCccEEeCcCCcCCCCCCcccCCC-CCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          201 FSKNIEFLKLSKNHFSEDIPDCWMNW-PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       201 ~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      .+++|++|++++|.++.. +. +..+ ++|++|++++|.+++.  ..+..+++|++|++++|.+++..+..|..+++|++
T Consensus        17 ~~~~L~~L~l~~n~l~~i-~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVI-EN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   92 (176)
T ss_dssp             CTTSCEEEECTTSCCCSC-CC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             CcCCceEEEeeCCCCchh-HH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence            367899999999999854 54 4444 4999999999999865  67889999999999999999777677789999999


Q ss_pred             EEccCCcccccCch--hhhhhcccccEEEccCCcCcCcCCc----ccCCCCCCcEEeCCCCcCc
Q 044353          280 LDMGENELVGNIPT--WIGETFSRLMILNLRSNKFHGDFPI----QLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       280 L~L~~n~l~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  337 (596)
                      |++++|.+. .+|.  .+. .+++|++|++++|.++ ..|.    .+..+++|+.||+++|...
T Consensus        93 L~L~~N~i~-~~~~~~~l~-~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           93 LILTNNSLV-ELGDLDPLA-SLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EECCSCCCC-CGGGGGGGG-GCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EECCCCcCC-cchhhHhhh-cCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            999999996 6776  444 7899999999999998 4555    3888999999999998865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.44  E-value=1.9e-15  Score=138.45  Aligned_cols=147  Identities=17%  Similarity=0.135  Sum_probs=121.3

Q ss_pred             eeecCCCccccCCc------cccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEE
Q 044353            2 LFLRRSQFYGHLTN------QLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVF   75 (596)
Q Consensus         2 l~L~~n~l~~~~~~------~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L   75 (596)
                      ++++.+.+++..|.      .+..+++|++|++++|.+++ +| .+..+++|++|++++|+++ .++. .+..+++|++|
T Consensus        23 l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~~~~L~~L   98 (198)
T 1ds9_A           23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEEL   98 (198)
T ss_dssp             TTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHHHHHCSEE
T ss_pred             cchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhcCCcCCEE
Confidence            57888889888887      89999999999999999986 56 8889999999999999998 7776 77788999999


Q ss_pred             EccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCCh---------hHHhcCCCC
Q 044353           76 RAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPR---------GFWNSIFQY  145 (596)
Q Consensus        76 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---------~~~~~l~~L  145 (596)
                      ++++|.++...  .+..+++|++|++++|++.+..+ ..+..+++|++|++++|.+++..|.         ..+..+++|
T Consensus        99 ~L~~N~l~~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L  176 (198)
T 1ds9_A           99 WISYNQIASLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNL  176 (198)
T ss_dssp             EEEEEECCCHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSC
T ss_pred             ECcCCcCCcCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCc
Confidence            99999987632  57778899999999999986443 5788999999999999998765443         234567899


Q ss_pred             cEEEccccccc
Q 044353          146 DYLNVSGNQIY  156 (596)
Q Consensus       146 ~~L~l~~n~l~  156 (596)
                      +.|+  ++.++
T Consensus       177 ~~Ld--~~~i~  185 (198)
T 1ds9_A          177 KKLD--GMPVD  185 (198)
T ss_dssp             SEEC--CGGGT
T ss_pred             EEEC--CcccC
Confidence            9886  55553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=1.6e-11  Score=125.02  Aligned_cols=114  Identities=10%  Similarity=0.076  Sum_probs=61.3

Q ss_pred             ccccCCccCcCCC-CCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe---eeeEeCCCCCCCCCccEEEccCCCCCC
Q 044353           33 VNGPIPLSLGQIA-NLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS---LVFKINPNWVPPFQLAFLELRSCHLGP  108 (596)
Q Consensus        33 i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~---l~~~~~~~~~~l~~L~~L~L~~n~l~~  108 (596)
                      ++.+-..+|.+++ .|+.+.+..+ ++ .+...+|.+|.+|+.+.+..+.   ++.....+|..+.+|+.+.+..+ +..
T Consensus        51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt-~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~  127 (394)
T 4gt6_A           51 VSKIGDRVFCNYKYVLTSVQIPDT-VT-EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTE  127 (394)
T ss_dssp             EEEECTTTTTTCCSCCCEEEECTT-CC-EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSE
T ss_pred             eeEcCHhhccCCCCcCEEEEECCC-ee-EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cce
Confidence            3334445666664 4777777654 44 5666677777777777766542   44455556666666666555443 333


Q ss_pred             CcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcc
Q 044353          109 RFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVS  151 (596)
Q Consensus       109 ~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~  151 (596)
                      .....|..+.+|+.+.+..+. . .+....+..+..|+.+.+.
T Consensus       128 I~~~aF~~c~~L~~i~lp~~~-~-~I~~~~F~~c~~L~~i~~~  168 (394)
T 4gt6_A          128 IDSEAFHHCEELDTVTIPEGV-T-SVADGMFSYCYSLHTVTLP  168 (394)
T ss_dssp             ECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCEEECC
T ss_pred             ehhhhhhhhccccccccccee-e-eecccceeccccccccccc
Confidence            444455566666666654332 1 2333333444455555443

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.44  E-value=1.8e-11  Score=124.72  Aligned_cols=135  Identities=8%  Similarity=0.074  Sum_probs=104.3

Q ss_pred             cCCccccCCC-CCCEEECcCCcccccCCccCcCCCCCCEEECcCCc---CccccChhhhhcCCCCcEEEccCCeeeeEeC
Q 044353           12 HLTNQLGRFK-TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNK---LNGTVSEIHFLNLTQLLVFRAHGNSLVFKIN   87 (596)
Q Consensus        12 ~~~~~l~~l~-~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~---i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   87 (596)
                      ....+|.+++ .|+.+.+..+ ++.+-..+|.+|.+|+.+.+..|.   ++ .++..+|.++.+|+.+.+..+ ++....
T Consensus        54 Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I~~  130 (394)
T 4gt6_A           54 IGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEIDS  130 (394)
T ss_dssp             ECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEECT
T ss_pred             cCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-cceehh
Confidence            3455788885 5999999764 776778999999999999998874   55 788889999999999888654 566777


Q ss_pred             CCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccc
Q 044353           88 PNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGN  153 (596)
Q Consensus        88 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n  153 (596)
                      .+|..+.+|+.+.+..+ +.......|..+..|+.+.+.++ ++ .+....+. ...|+.+.+..+
T Consensus       131 ~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~-~~~l~~i~ip~~  192 (394)
T 4gt6_A          131 EAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFT-GTALTQIHIPAK  192 (394)
T ss_dssp             TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTT-TCCCSEEEECTT
T ss_pred             hhhhhhcccccccccce-eeeecccceecccccccccccce-ee-Eecccccc-ccceeEEEECCc
Confidence            89999999999999754 44466778899999999998765 33 34444444 357888777544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.43  E-value=1.8e-15  Score=138.58  Aligned_cols=82  Identities=21%  Similarity=0.308  Sum_probs=53.4

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCC-ccccCCCCCCEEECCCCcCcccCCc----------cc
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQ----------SM  460 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~----------~~  460 (596)
                      ++|+.|++++|.+++ +| .+..+++|+.|++++|++++..+ ..+..+++|++|++++|.+++..|.          .+
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            336666666666653 33 46667777777777777764322 3567777777777777777655443          26


Q ss_pred             cCCCCCCEEecccccCc
Q 044353          461 SNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       461 ~~l~~L~~L~ls~N~l~  477 (596)
                      ..+++|+.||  +|+++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            6777788776  56554

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=1.7e-12  Score=115.34  Aligned_cols=108  Identities=19%  Similarity=0.129  Sum_probs=79.9

Q ss_pred             CCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEcc
Q 044353           23 LRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELR  102 (596)
Q Consensus        23 L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  102 (596)
                      .+++++++|.++. +|..+.  ++|++|+|++|+|+ .++...|.++++|++|+|++|.++...+..|..+++|++|+|+
T Consensus        11 ~~~l~~s~n~l~~-ip~~~~--~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLAS-VPTGIP--TTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcCc-cCccCC--CCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4677777777774 455442  67788888888877 4433377778888888888888776666677778888888888


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccCcCcccC
Q 044353          103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKI  134 (596)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~  134 (596)
                      +|++++..+..+..+++|+.|++++|.++...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            88887776777888888888888888887543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.38  E-value=1.8e-12  Score=115.48  Aligned_cols=105  Identities=18%  Similarity=0.142  Sum_probs=77.0

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS  103 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  103 (596)
                      +.+++++|.++ .+|..+.  ++|++|+|++|+++ .++...|.++++|++|+|++|.++...+..|..+++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            67777777776 4455443  67778888888777 34333777777888888888877776666677778888888888


Q ss_pred             CCCCCCcchhhcCCCCCcEEEcccCcCcc
Q 044353          104 CHLGPRFPLWLQSQKKLYYLDISSTRISA  132 (596)
Q Consensus       104 n~l~~~~~~~l~~l~~L~~L~l~~n~i~~  132 (596)
                      |++.+..+..+..+++|+.|++++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            88876666668888888888888888764

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.33  E-value=7.4e-14  Score=140.37  Aligned_cols=166  Identities=19%  Similarity=0.134  Sum_probs=91.8

Q ss_pred             CCCcEEEccCCcccccCChhhcC-----CCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCccc-----
Q 044353          251 NSLMSLNLRNNRLSGIIPTSFRN-----LSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQL-----  320 (596)
Q Consensus       251 ~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----  320 (596)
                      +.|+.|++++|.++......+..     .++|++|+|++|.+.+.....+...+++|+.|+|++|.++......+     
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            56777777777776544333332     25788888888877644444444456677788888777764322222     


Q ss_pred             CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEcc
Q 044353          321 CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDIS  400 (596)
Q Consensus       321 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  400 (596)
                      ...++|++|++++|.++......+..                                        ....+++|++|+|+
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~----------------------------------------~L~~~~~L~~L~Ls  191 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLME----------------------------------------GLAGNTSVTHLSLL  191 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHH----------------------------------------HHHTCSSCCEEECT
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHH----------------------------------------HHhcCCCcCEEeCC
Confidence            23567777777777765321111110                                        00113346666666


Q ss_pred             CCccccc----CCccccCcccCCeeeccCccCcccC----CccccCCCCCCEEECCCCcCcccC
Q 044353          401 KNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRI----PDNIGVMRSIESLDFSANQLSGQI  456 (596)
Q Consensus       401 ~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~N~l~~~~  456 (596)
                      +|.+++.    ++..+...++|++|+|++|.+++..    ...+...++|++|+|++|.++...
T Consensus       192 ~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g  255 (372)
T 3un9_A          192 HTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEG  255 (372)
T ss_dssp             TSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred             CCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence            6666532    2334455556666666666665322    222334456666666666665433

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.29  E-value=8.7e-10  Score=111.64  Aligned_cols=277  Identities=10%  Similarity=0.071  Sum_probs=130.7

Q ss_pred             ccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCc
Q 044353           17 LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQL   96 (596)
Q Consensus        17 l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   96 (596)
                      +....+|+.+.+.. .++.+-..+|.+|.+|+.++|..+ ++ .++..+|.++ +|+.+.+..+ ++.....+|..+ +|
T Consensus        42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~-~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L  115 (379)
T 4h09_A           42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VT-SIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DL  115 (379)
T ss_dssp             GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CC-EECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CC
T ss_pred             cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ce-EechhhhcCC-CCceEECCce-eeEeccceeccC-Cc
Confidence            44456677777654 455555667777777777777644 44 6666677776 4666655432 444444555543 56


Q ss_pred             cEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCC
Q 044353           97 AFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLL  176 (596)
Q Consensus        97 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~  176 (596)
                      +.+.+.++ +.......|.++ .++.+.+..+ ++ .+....+..+..++.+.+..+.........              
T Consensus       116 ~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~--------------  177 (379)
T 4h09_A          116 DDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENY--------------  177 (379)
T ss_dssp             SEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETT--------------
T ss_pred             ccccCCCc-cccccccccccc-eeeeeeccce-ee-ccccchhcccccccccccccccceeecccc--------------
Confidence            77666543 222333334433 3444443322 22 122222333455555544433211000000              


Q ss_pred             CceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEE
Q 044353          177 GSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL  256 (596)
Q Consensus       177 ~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  256 (596)
                         .....       .......+.....+..+.+.... ......++..+.+|+.+.+..+ +......+|.++..|+.+
T Consensus       178 ---~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i  245 (379)
T 4h09_A          178 ---VLYNK-------NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEI  245 (379)
T ss_dssp             ---EEEET-------TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEE
T ss_pred             ---eeccc-------ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEE
Confidence               00000       00000111113344444443322 1223344555556666666443 333444555566666666


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCC
Q 044353          257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA  332 (596)
Q Consensus       257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~  332 (596)
                      .+..+ ++.+...+|.++.+|+.+.+..+ +. .++...+..+.+|+.+.+.++.++.+-..+|.++.+|+.+++.
T Consensus       246 ~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          246 AIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             EECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             EcCCC-ccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            66544 44455555666666666655433 22 4444444455555555555554443334455555555555553

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.27  E-value=6.3e-12  Score=125.85  Aligned_cols=91  Identities=20%  Similarity=0.195  Sum_probs=82.1

Q ss_pred             cccccEEEccC-CcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353          391 LNLVRSIDISK-NNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       391 ~~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  469 (596)
                      +++|+.|+|++ |.+++..+..|.++++|+.|+|++|+|++..|..|..+++|+.|+|++|+|++..+..|..++ |+.|
T Consensus        30 ~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l  108 (347)
T 2ifg_A           30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQEL  108 (347)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEE
T ss_pred             CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEE
Confidence            34489999996 999988888999999999999999999999999999999999999999999987777777777 9999


Q ss_pred             ecccccCccCCCC
Q 044353          470 NLSNNNLNGEIPS  482 (596)
Q Consensus       470 ~ls~N~l~~~~~~  482 (596)
                      ++++|++.|.|..
T Consensus       109 ~l~~N~~~c~c~l  121 (347)
T 2ifg_A          109 VLSGNPLHCSCAL  121 (347)
T ss_dssp             ECCSSCCCCCGGG
T ss_pred             EeeCCCccCCCcc
Confidence            9999999988763

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=99.21  E-value=2e-09  Score=108.96  Aligned_cols=300  Identities=9%  Similarity=0.044  Sum_probs=198.5

Q ss_pred             ccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCC
Q 044353            9 FYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINP   88 (596)
Q Consensus         9 l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   88 (596)
                      ++.....+|.++.+|+.++|..+ ++.+-..+|.++ +|+.+.+..+ +. .++..+|.++ +|+.+.+..+ +......
T Consensus        57 vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~~-~L~~i~lp~~-~~~i~~~  130 (379)
T 4h09_A           57 ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQGT-DLDDFEFPGA-TTEIGNY  130 (379)
T ss_dssp             EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTTC-CCSEEECCTT-CCEECTT
T ss_pred             ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-EeccceeccC-CcccccCCCc-ccccccc
Confidence            44445668999999999999764 676777889888 6888888765 54 7777788876 7999999765 4445556


Q ss_pred             CCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEE-EcccccccccCCCCCCCCC
Q 044353           89 NWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYL-NVSGNQIYGGVPKFDSPSV  167 (596)
Q Consensus        89 ~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L-~l~~n~l~~~~~~~~~~~~  167 (596)
                      +|..+ .|+...+..+ ++......+..+..++.+.+................ ...... ....+.           ..
T Consensus       131 ~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----------~~  196 (379)
T 4h09_A          131 IFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYN-KNKTILESYPAAK-----------TG  196 (379)
T ss_dssp             TTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEE-TTSSEEEECCTTC-----------CC
T ss_pred             ccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecc-cccceeccccccc-----------cc
Confidence            67665 5666666543 444556678888999988877654321111111000 000000 000000           00


Q ss_pred             CccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccC
Q 044353          168 PLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSI  247 (596)
Q Consensus       168 ~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  247 (596)
                                ..+.+...     ........+..+.+++.+.+..+ +..+...+|.++..|+.+.+..+ ++.....+|
T Consensus       197 ----------~~~~~~~~-----~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF  259 (379)
T 4h09_A          197 ----------TEFTIPST-----VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLL  259 (379)
T ss_dssp             ----------SEEECCTT-----CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTT
T ss_pred             ----------cccccccc-----eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCcccc
Confidence                      11111100     00111122333567888888654 44556677888899999999776 665677788


Q ss_pred             cCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCc
Q 044353          248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ  327 (596)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  327 (596)
                      .++.+|+.+.+..+ +..+...+|.++.+|+.+.+.++.+. .++...|..+.+|+.+.+..+ ++.+-..+|.++.+|+
T Consensus       260 ~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~-~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          260 QNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIE-TLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             ceeehhcccccccc-ceeccccccccccccccccccccccc-eehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            88999999998654 55577788999999999999888886 777888878899999999754 5545567889999999


Q ss_pred             EEeCCCCcCcccCCcccccccc
Q 044353          328 ILDVAYNSLSGTIPRCINNFSA  349 (596)
Q Consensus       328 ~L~l~~n~l~~~~~~~~~~l~~  349 (596)
                      .+.+..+ ++..-..+|.++..
T Consensus       337 ~i~ip~~-v~~I~~~aF~~c~~  357 (379)
T 4h09_A          337 TISYPKS-ITLIESGAFEGSSI  357 (379)
T ss_dssp             CCCCCTT-CCEECTTTTTTSSC
T ss_pred             EEEECCc-cCEEchhHhhCCCC
Confidence            9988654 55455667776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.19  E-value=1.9e-13  Score=137.36  Aligned_cols=188  Identities=14%  Similarity=0.071  Sum_probs=106.9

Q ss_pred             CCCCCEEECcCCcCccccChhhhhc-----CCCCcEEEccCCeeeeEeCCCC-CCCCCccEEEccCCCCCCCcchhh---
Q 044353           44 IANLEYLDLSNNKLNGTVSEIHFLN-----LTQLLVFRAHGNSLVFKINPNW-VPPFQLAFLELRSCHLGPRFPLWL---  114 (596)
Q Consensus        44 l~~L~~L~Ls~n~i~~~~~~~~~~~-----l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~l---  114 (596)
                      +++|++|+|++|.++ ......+..     ..+|++|+|++|.+.......+ ..+.+|+.|+|++|.++......+   
T Consensus        71 ~~~L~~L~Ls~n~l~-~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMT-PVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCC-HHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCC-HHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            356777777777765 222112222     2577777777776653322222 234567788888887765444443   


Q ss_pred             --cCCCCCcEEEcccCcCcccCChhHH---hcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCcccc
Q 044353          115 --QSQKKLYYLDISSTRISAKIPRGFW---NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSG  189 (596)
Q Consensus       115 --~~l~~L~~L~l~~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~  189 (596)
                        ...++|+.|++++|.+++.....+.   ...++|++|++++|.+++.                               
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~-------------------------------  198 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDE-------------------------------  198 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHH-------------------------------
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcH-------------------------------
Confidence              2467788888888887653333332   3356777777777776421                               


Q ss_pred             ccccccccCCCCCCCccEEeCcCCcCCCCC----CcccCCCCCCcEEEcccccccccCCccCcCC---C--CCcEEE--c
Q 044353          190 SIFHLICQGENFSKNIEFLKLSKNHFSEDI----PDCWMNWPRLRMLNLGNNNFTGSLPMSIGAL---N--SLMSLN--L  258 (596)
Q Consensus       190 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l---~--~L~~L~--L  258 (596)
                       ....++..+..+++|++|++++|.+++..    +..+...++|++|++++|.++......+..+   .  .|+.+.  +
T Consensus       199 -g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll  277 (372)
T 3un9_A          199 -GLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLT  277 (372)
T ss_dssp             -HHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC
T ss_pred             -HHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhh
Confidence             11222333344567888888888886432    2334456788888888888874433333222   2  266666  6


Q ss_pred             cCCccc
Q 044353          259 RNNRLS  264 (596)
Q Consensus       259 ~~n~l~  264 (596)
                      ..+.+.
T Consensus       278 ~~~~~~  283 (372)
T 3un9_A          278 EGTAVS  283 (372)
T ss_dssp             ----CH
T ss_pred             cCCccC
Confidence            666655

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.17  E-value=5.1e-11  Score=119.21  Aligned_cols=107  Identities=16%  Similarity=0.194  Sum_probs=94.1

Q ss_pred             cEEEccCC-cccccCCccccCcccCCeeeccC-ccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          395 RSIDISKN-NFSGEIPVEVTNLQGLQSLNLSH-NLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       395 ~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      ..++.+++ .++ .+|. +..+++|++|+|++ |++++..+..|+.+++|+.|+|++|+|++..|..|..+++|+.|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            45788888 888 5788 99999999999996 99998888899999999999999999999999999999999999999


Q ss_pred             cccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          473 NNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       473 ~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +|++++..+.......++.+.+.+|+ .|.+.
T Consensus        89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           89 FNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             SSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            99999776665544458899999999 67654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.85  E-value=9.6e-10  Score=109.37  Aligned_cols=83  Identities=13%  Similarity=0.277  Sum_probs=50.0

Q ss_pred             cccccEEEccCCcccccCCccc---cCcccCCeeeccCccCccc----CCccccCCCCCCEEECCCCcCcccCCccccC-
Q 044353          391 LNLVRSIDISKNNFSGEIPVEV---TNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQLSGQIPQSMSN-  462 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~~~~~~~---~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-  462 (596)
                      +++|+.|+|++|.+.+..+..+   ..+++|++|+|+.|.+++.    ++..+..+++|+.|++++|.++...-..+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            5567777777777654332222   2467788888887777653    2333455677888888888776443333332 


Q ss_pred             CCCCCEEeccccc
Q 044353          463 LSFLNYLNLSNNN  475 (596)
Q Consensus       463 l~~L~~L~ls~N~  475 (596)
                      +  ...+++++++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            2  3456777665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.83  E-value=1.5e-09  Score=107.93  Aligned_cols=181  Identities=19%  Similarity=0.225  Sum_probs=104.1

Q ss_pred             CCCCCcEEEccccccc---------ccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhh
Q 044353          225 NWPRLRMLNLGNNNFT---------GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWI  295 (596)
Q Consensus       225 ~l~~L~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  295 (596)
                      .+++|+.|.+......         +.+...+..+|+|+.|++++|.-. ..+. + .+++|+.|++..+.+.......+
T Consensus       137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l  213 (362)
T 2ra8_A          137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDI  213 (362)
T ss_dssp             HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred             hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence            4556666666443211         112233455677777777766311 1222 3 26777777777766643222222


Q ss_pred             h-hhcccccEEEccC--CcCcCc-----CCccc--CCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc
Q 044353          296 G-ETFSRLMILNLRS--NKFHGD-----FPIQL--CRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA  365 (596)
Q Consensus       296 ~-~~l~~L~~L~L~~--n~l~~~-----~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  365 (596)
                      . ..+++|+.|+|+.  +...+.     +...+  ..+++|+.|++.+|.+.+..+..+...+                 
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~-----------------  276 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESD-----------------  276 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCS-----------------
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCc-----------------
Confidence            2 1467777777753  111111     11122  2478899999988887643332222111                 


Q ss_pred             CCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc----CCccccCcccCCeeeccCccCcccCCccccC-CC
Q 044353          366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV-MR  440 (596)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~  440 (596)
                                              .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++...-..+.. + 
T Consensus       277 ------------------------~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-  331 (362)
T 2ra8_A          277 ------------------------ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-  331 (362)
T ss_dssp             ------------------------SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-
T ss_pred             ------------------------cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-
Confidence                                    256789999999988763    3334456789999999999887554444443 2 


Q ss_pred             CCCEEECCCCc
Q 044353          441 SIESLDFSANQ  451 (596)
Q Consensus       441 ~L~~L~Ls~N~  451 (596)
                       ...+++++++
T Consensus       332 -g~~~~~~~~~  341 (362)
T 2ra8_A          332 -PMKIDVSDSQ  341 (362)
T ss_dssp             -CSEEECCSBC
T ss_pred             -CCEEEecCCc
Confidence             3568888887

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.46  E-value=2.3e-08  Score=89.63  Aligned_cols=68  Identities=13%  Similarity=0.142  Sum_probs=37.0

Q ss_pred             ccccCCCCCCEEECcCC-ccccc----CCccCcCCCCCCEEECcCCcCccc----cChhhhhcCCCCcEEEccCCeee
Q 044353           15 NQLGRFKTLRALDLSNN-TVNGP----IPLSLGQIANLEYLDLSNNKLNGT----VSEIHFLNLTQLLVFRAHGNSLV   83 (596)
Q Consensus        15 ~~l~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~~l~~L~~L~L~~n~l~   83 (596)
                      ..+...+.|++|+|++| .+.+.    +...+...++|++|+|++|.|.+.    +.. .+...+.|++|+|++|.+.
T Consensus        30 ~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~-~L~~n~~L~~L~L~~N~i~  106 (185)
T 1io0_A           30 RIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAE-MLKVNNTLKSLNVESNFIS  106 (185)
T ss_dssp             HHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHH-HHHHCSSCCEEECCSSCCC
T ss_pred             HHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHH-HHHhCCCcCEEECcCCcCC
Confidence            34556666777777666 66532    233445566666666666666421    111 3344455666666555554

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=6.4e-07  Score=84.33  Aligned_cols=62  Identities=23%  Similarity=0.345  Sum_probs=27.9

Q ss_pred             cccccEEEccCCcccc--cCCccccCcccCCeeeccCccCcccCCccccCCC--CCCEEECCCCcCcc
Q 044353          391 LNLVRSIDISKNNFSG--EIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMR--SIESLDFSANQLSG  454 (596)
Q Consensus       391 ~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~--~L~~L~Ls~N~l~~  454 (596)
                      +++|+.|+|++|.+++  .++..+..+++|+.|+|++|+|++.  ..+..+.  +|++|+|++|.+++
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence            4445555555555543  2233344455555555555555432  1122222  45555555555443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.26  E-value=1.8e-07  Score=83.83  Aligned_cols=89  Identities=13%  Similarity=0.156  Sum_probs=40.2

Q ss_pred             CCCCCcEEEccCCcccccC----ChhhcCCCCCCEEEccCCcccccCchhhhh---hcccccEEEc--cCCcCcCc----
Q 044353          249 ALNSLMSLNLRNNRLSGII----PTSFRNLSILKALDMGENELVGNIPTWIGE---TFSRLMILNL--RSNKFHGD----  315 (596)
Q Consensus       249 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~---~l~~L~~L~L--~~n~l~~~----  315 (596)
                      ..++|++|+|++|.+....    ...+...++|++|+|++|.+.+.....+..   ..++|++|++  ++|.+...    
T Consensus        63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~  142 (185)
T 1io0_A           63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  142 (185)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence            3344444444444444221    222333445555555555554222111111   2334555555  44555422    


Q ss_pred             CCcccCCCCCCcEEeCCCCcCc
Q 044353          316 FPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       316 ~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      +...+...++|++|++++|.+.
T Consensus       143 l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          143 IANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCcCEEeccCCCCC
Confidence            2233444566777777777654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.20  E-value=1.6e-07  Score=88.36  Aligned_cols=106  Identities=25%  Similarity=0.198  Sum_probs=63.3

Q ss_pred             ccCCCCCCE--EECcCCccc---ccCCccCcCCCCCCEEECcCCcCcc--ccChhhhhcCCCCcEEEccCCeeeeEe-CC
Q 044353           17 LGRFKTLRA--LDLSNNTVN---GPIPLSLGQIANLEYLDLSNNKLNG--TVSEIHFLNLTQLLVFRAHGNSLVFKI-NP   88 (596)
Q Consensus        17 l~~l~~L~~--L~ls~n~i~---~~~~~~~~~l~~L~~L~Ls~n~i~~--~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~   88 (596)
                      +...+.|..  ++++.|...   ..++....++++|++|+|++|+|++  .++. .+..+++|++|+|++|.+.+.. ..
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~-~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSS-IVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTT-HHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchh-HHhhCCCCCEEECCCCccCCchhhh
Confidence            444445554  556666332   1112222456777777777777763  2333 5567777777777777776431 11


Q ss_pred             CCCCCCCccEEEccCCCCCCCcc-------hhhcCCCCCcEEE
Q 044353           89 NWVPPFQLAFLELRSCHLGPRFP-------LWLQSQKKLYYLD  124 (596)
Q Consensus        89 ~~~~l~~L~~L~L~~n~l~~~~~-------~~l~~l~~L~~L~  124 (596)
                      .+..+ +|+.|+|.+|.+.+..+       ..+..+++|+.||
T Consensus       216 ~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             GGTTS-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             hcccC-CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            22233 78888888888765443       3467789998886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=4.8e-07  Score=78.85  Aligned_cols=85  Identities=13%  Similarity=0.139  Sum_probs=70.6

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCcc-CcccCCccccCC----CCCCEEECCCCc-CcccCCccccCCCC
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVM----RSIESLDFSANQ-LSGQIPQSMSNLSF  465 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l----~~L~~L~Ls~N~-l~~~~~~~~~~l~~  465 (596)
                      ..|+.||+++|.++..-...+.++++|++|+|++|. +++..-..++.+    ++|++|+|++|. ++...-..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            359999999999987777778899999999999995 776655666664    479999999985 88655567788999


Q ss_pred             CCEEecccccC
Q 044353          466 LNYLNLSNNNL  476 (596)
Q Consensus       466 L~~L~ls~N~l  476 (596)
                      |++|++++++-
T Consensus       141 L~~L~L~~c~~  151 (176)
T 3e4g_A          141 LKYLFLSDLPG  151 (176)
T ss_dssp             CCEEEEESCTT
T ss_pred             CCEEECCCCCC
Confidence            99999999863

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.95  E-value=2.3e-06  Score=74.52  Aligned_cols=86  Identities=14%  Similarity=0.092  Sum_probs=49.2

Q ss_pred             CCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe-eeeEeCCCCCCC----CCccEEEccCCC-CCCCcchhhcCCC
Q 044353           45 ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS-LVFKINPNWVPP----FQLAFLELRSCH-LGPRFPLWLQSQK  118 (596)
Q Consensus        45 ~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~  118 (596)
                      .+|++||++++.|++. .-..+.++++|++|+|++|. ++......+..+    ++|++|++++|. ++...-..+++++
T Consensus        61 ~~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            3456666666555422 11244555666666666653 333222233332    357777777764 6655566677788


Q ss_pred             CCcEEEcccCc-Cc
Q 044353          119 KLYYLDISSTR-IS  131 (596)
Q Consensus       119 ~L~~L~l~~n~-i~  131 (596)
                      +|+.|+++++. ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            88888888874 54

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.59  E-value=9.7e-05  Score=61.30  Aligned_cols=61  Identities=16%  Similarity=0.200  Sum_probs=48.4

Q ss_pred             eeeccCccCc-ccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCC
Q 044353          420 SLNLSHNLFT-GRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPS  482 (596)
Q Consensus       420 ~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~  482 (596)
                      .++-+++.++ ..+|..+.  ++|+.|+|++|+|+.+.+..|..+++|+.|+|++|++.|.+..
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~l   73 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRL   73 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGGG
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCcc
Confidence            5677777775 34555432  5789999999999977778889999999999999999988764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.16  E-value=0.00014  Score=64.62  Aligned_cols=65  Identities=15%  Similarity=0.163  Sum_probs=29.4

Q ss_pred             cCCCCCCEEECcCC-ccccc----CCccCcCCCCCCEEECcCCcCccccC---hhhhhcCCCCcEEEccCCee
Q 044353           18 GRFKTLRALDLSNN-TVNGP----IPLSLGQIANLEYLDLSNNKLNGTVS---EIHFLNLTQLLVFRAHGNSL   82 (596)
Q Consensus        18 ~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l   82 (596)
                      .+-+.|++|+|++| .|.+.    +.+++..-+.|+.|+|++|+|.+.-.   ...+..-+.|++|+|+.|.|
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            34455555555553 44421    23334444555555555555541110   01233344455555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.03  E-value=0.00035  Score=61.97  Aligned_cols=115  Identities=9%  Similarity=0.055  Sum_probs=77.9

Q ss_pred             cCcCCCCCCEEECcCC-cCccc----cChhhhhcCCCCcEEEccCCeeeeEeCCCCC----CCCCccEEEccCCCCCCCc
Q 044353           40 SLGQIANLEYLDLSNN-KLNGT----VSEIHFLNLTQLLVFRAHGNSLVFKINPNWV----PPFQLAFLELRSCHLGPRF  110 (596)
Q Consensus        40 ~~~~l~~L~~L~Ls~n-~i~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~----~l~~L~~L~L~~n~l~~~~  110 (596)
                      .+.+-+.|++|+|++| +|.+.    +- .++..-..|+.|+|++|.+......++.    .-+.|++|+|++|.|....
T Consensus        36 ll~~n~~L~~L~L~~nn~igd~ga~~la-~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G  114 (197)
T 1pgv_A           36 LREDDTDLKEVNINNMKRVSKERIRSLI-EAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL  114 (197)
T ss_dssp             HHTTCSSCCEEECTTCCSSCHHHHHHHH-HHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred             HHhcCCCccEEECCCCCCCCHHHHHHHH-HHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence            3456688999999986 77521    22 2566778899999999998755544443    4568999999999987543


Q ss_pred             ----chhhcCCCCCcEEEcccC---cCcccCChhHH---hcCCCCcEEEcccccc
Q 044353          111 ----PLWLQSQKKLYYLDISST---RISAKIPRGFW---NSIFQYDYLNVSGNQI  155 (596)
Q Consensus       111 ----~~~l~~l~~L~~L~l~~n---~i~~~~~~~~~---~~l~~L~~L~l~~n~l  155 (596)
                          ...+..-+.|+.|+|+++   .+.......+.   ..-+.|+.|+++.+.+
T Consensus       115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence                344566678999999865   34433222222   2336788888876654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.47  E-value=0.0047  Score=51.01  Aligned_cols=57  Identities=16%  Similarity=0.277  Sum_probs=47.3

Q ss_pred             cEEEccCCccc-ccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCc
Q 044353          395 RSIDISKNNFS-GEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLS  453 (596)
Q Consensus       395 ~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~  453 (596)
                      ..++.+++.++ ..+|..+  .++|+.|+|++|+|+...++.|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888898886 3566543  257999999999999777788999999999999999876

>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}

Probab=88.97  E-value=0.2  Score=31.59  Aligned_cols=28  Identities=18%  Similarity=0.156  Sum_probs=13.4

Q ss_pred             eeehhhhHHHHHHHHHHhhhhhhccchh
Q 044353          535 LYISMALGFVVGFWCFIGPLLIKRRWRY  562 (596)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  562 (596)
                      +..+++.|++++++++.+.++|.+|++.
T Consensus        13 IA~gVVgGv~~~~ii~~~~~~~~RRr~~   40 (44)
T 2ks1_B           13 IATGMVGALLLLLVVALGIGLFMRRRHI   40 (44)
T ss_dssp             STHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             EEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence            3344444455544555554555555443

>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}

Probab=87.96  E-value=0.18  Score=31.74  Aligned_cols=27  Identities=15%  Similarity=0.012  Sum_probs=12.8

Q ss_pred             ehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353          537 ISMALGFVVGFWCFIGPLLIKRRWRYK  563 (596)
Q Consensus       537 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (596)
                      .+++.|++++++++.+.++|.+|++++
T Consensus        14 ~gVVgGv~~v~ii~~~~~~~~RRRr~~   40 (44)
T 2l2t_A           14 AGVIGGLFILVIVGLTFAVYVRRKSIK   40 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred             EeehHHHHHHHHHHHHHHHHhhhhhhh
Confidence            333444444444454445555554443

>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A

Probab=85.44  E-value=0.28  Score=30.83  Aligned_cols=29  Identities=17%  Similarity=0.085  Sum_probs=14.0

Q ss_pred             eeehhhhHHHHHHHHHHhhhhhhccchhh
Q 044353          535 LYISMALGFVVGFWCFIGPLLIKRRWRYK  563 (596)
Q Consensus       535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  563 (596)
                      .+++.++|+++.+++.+++++|.||++++
T Consensus        13 ~Ia~~vVGvll~vi~~l~~~~~~RRR~~~   41 (44)
T 2jwa_A           13 SIISAVVGILLVVVLGVVFGILIKRRQQK   41 (44)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCSC
T ss_pred             chHHHHHHHHHHHHHHHHHHhheehhhhh
Confidence            34555555444444444445555554443

>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A

Probab=84.88  E-value=0.52  Score=28.74  Aligned_cols=28  Identities=18%  Similarity=0.350  Sum_probs=16.5

Q ss_pred             cceeeehhhhHHHHHHHHHHhhhhhhcc
Q 044353          532 DWLLYISMALGFVVGFWCFIGPLLIKRR  559 (596)
Q Consensus       532 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  559 (596)
                      ....+++++++.++++.+++++.++.+|
T Consensus         9 s~GaIAGiVvG~v~gv~li~~l~~~~~r   36 (38)
T 2k1k_A            9 TGGEIVAVIFGLLLGAALLLGILVFRSR   36 (38)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             CCCceeeeehHHHHHHHHHHHHHHHHee
Confidence            3456677777777666555555444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	596
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-20
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-15
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	5e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	6e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-10
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	9e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	4e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	1e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	9e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-05
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	9e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	3e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 89.4 bits (220), Expect = 3e-20
 Identities = 68/262 (25%), Positives = 111/262 (42%), Gaps = 6/262 (2%)

Query: 253 LMSLNLRNNRLSGI--IPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSN 310
           + +L+L    L     IP+S  NL  L  L +G    +           ++L  L +   
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111

Query: 311 KFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTD-SSDPNSGIFYASSGD 369
              G  P  L ++ +L  LD +YN+LSGT+P  I++   +       +  SG    S G 
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171

Query: 370 NEIVEDALLVTKGFLVE--YNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL 427
              +  ++ +++  L      +  NL  +      N        +               
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231

Query: 428 FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ 487
                   +G+ +++  LD   N++ G +PQ ++ L FL+ LN+S NNL GEIP    LQ
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQ 291

Query: 488 SFGASSFAGND-LCGAPLSNCT 508
            F  S++A N  LCG+PL  CT
Sbjct: 292 RFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 74.8 bits (182), Expect = 3e-15
 Identities = 57/280 (20%), Positives = 89/280 (31%), Gaps = 17/280 (6%)

Query: 15  NQLGRFKTLRALDLSNNTVNG--PIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQL 72
           +   +   +  LDLS   +    PIP SL  +  L +L +                LTQL
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 73  LVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISA 132
                   ++   I         L  L+     L    P  + S   L  +     RIS 
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 133 KIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIF 192
            IP  + +    +  + +S N++ G +P   +                +L+   LS ++ 
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--------------LNLAFVDLSRNML 209

Query: 193 HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS 252
                    S           +              L  L+L NN   G+LP  +  L  
Sbjct: 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF 269

Query: 253 LMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIP 292
           L SLN+  N L G IP    NL          N+ +   P
Sbjct: 270 LHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 71.3 bits (173), Expect = 3e-14
 Identities = 61/294 (20%), Positives = 107/294 (36%), Gaps = 9/294 (3%)

Query: 170 ITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFS--EDIPDCWMNWP 227
           +  P+ L S +  + +  + +   ++C  +  +  +  L LS  +      IP    N P
Sbjct: 18  LGNPTTLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP 76

Query: 228 RLRMLNL-GNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
            L  L + G NN  G +P +I  L  L  L + +  +SG IP     +  L  LD   N 
Sbjct: 77  YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA 136

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
           L G +P  I  +   L+ +    N+  G  P        L        +           
Sbjct: 137 LSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 347 FSAMATTDSSDPNSGIFYASSGDNEI---VEDALLVTKGFLVEYNSILNLVRSIDISKNN 403
              +A  D S        +    ++           +  F +    +   +  +D+  N 
Sbjct: 196 NLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNR 255

Query: 404 FSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIP 457
             G +P  +T L+ L SLN+S N   G IP   G ++  +   ++ N+     P
Sbjct: 256 IYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.9 bits (107), Expect = 7e-06
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 4   LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKL 57
           LR ++ YG L   L + K L +L++S N + G IP   G +   +    +NNK 
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 3e-14
 Identities = 52/343 (15%), Positives = 98/343 (28%), Gaps = 38/343 (11%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
              +  L      +       +  + NL  ++ SNN+L       +   L  +L+     
Sbjct: 43  LDQVTTLQADRLGIKSID--GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI 100

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
             +    N   +    L   ++             + +     +   S        +   
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSI-FDLSNNALSGSIFHLICQG 198
                 D   ++       +    +    +     L        +NN +S      I   
Sbjct: 161 FGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL-- 218

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
                N++ L L+ N   +       +   L  L+L NN  +   P  +  L  L  L L
Sbjct: 219 ----TNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKL 270

Query: 259 RNNRLSGIIP--------------------TSFRNLSILKALDMGENELVGNIPTWIGET 298
             N++S I P                    +   NL  L  L +  N +    P     +
Sbjct: 271 GANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPV---SS 327

Query: 299 FSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIP 341
            ++L  L   +NK        L  L ++  L   +N +S   P
Sbjct: 328 LTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP 368

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 5e-14
 Identities = 71/430 (16%), Positives = 133/430 (30%), Gaps = 68/430 (15%)

Query: 45  ANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSC 104
           A      L    +  TVS+     +T L   R    S+      N      L  +   + 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLN-----NLTQINFSNN 76

Query: 105 HLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDS 164
            L    P  L++  KL  + +++ +I+   P     ++      N     I       + 
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 165 PSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWM 224
             + L +      S      +    S  + +   +  +      +L  +           
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
               L  L   NN  +   P+ I    +L  L+L  N+L  I   +  +L+ L  LD+  
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKDI--GTLASLTNLTDLDLAN 250

Query: 285 NELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCI 344
           N++    P       ++L  L L +N+     P+                  + T     
Sbjct: 251 NQISNLAPLS---GLTKLTELKLGANQISNISPL--------------AGLTALTNLELN 293

Query: 345 NNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNF 404
            N                                      +   S L  +  + +  NN 
Sbjct: 294 ENQLED----------------------------------ISPISNLKNLTYLTLYFNNI 319

Query: 405 SGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLS 464
           S   PV   +L  LQ L  ++N  +     ++  + +I  L    NQ+S   P  ++NL+
Sbjct: 320 SDISPVS--SLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLT 373

Query: 465 FLNYLNLSNN 474
            +  L L++ 
Sbjct: 374 RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.3 bits (163), Expect = 1e-12
 Identities = 57/331 (17%), Positives = 99/331 (29%), Gaps = 46/331 (13%)

Query: 17  LGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFR 76
           +     L  ++ SNN +    P  L  +  L  + ++NN++       +  NLT L +F 
Sbjct: 62  VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFN 119

Query: 77  AHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQK-----------KLYYLDI 125
                +    N   +   +L+   +             Q               L  L+ 
Sbjct: 120 NQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLER 179

Query: 126 SSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPL-------ITTPSLLGS 178
                +          +   + L  + NQI    P     ++         +     L S
Sbjct: 180 LDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLAS 239

Query: 179 -----IFDLSNNALSGSIF--------HLICQGENFSKNIEFLKLSKNHFSEDIPDCWMN 225
                  DL+NN +S             L       S       L+     E   +   +
Sbjct: 240 LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED 299

Query: 226 WPR------LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279
                    L  L L  NN +   P  + +L  L  L   NN++S    +S  NL+ +  
Sbjct: 300 ISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINW 355

Query: 280 LDMGENELVGNIPTWIGETFSRLMILNLRSN 310
           L  G N++    P       +R+  L L   
Sbjct: 356 LSAGHNQISDLTPL---ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 1e-10
 Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 35/209 (16%)

Query: 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332
            L+ L++L    N++    P  I    + L  L+L  N+        L  L +L  LD+A
Sbjct: 195 KLTNLESLIATNNQISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLA 249

Query: 333 YNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILN 392
            N +S   P  ++  + +                +G   +    L   +   +   S L 
Sbjct: 250 NNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLK 307

Query: 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
            +  + +  NN S   PV   +L  LQ L  ++N  +                       
Sbjct: 308 NLTYLTLYFNNISDISPVS--SLTKLQRLFFANNKVSD---------------------- 343

Query: 453 SGQIPQSMSNLSFLNYLNLSNNNLNGEIP 481
                 S++NL+ +N+L+  +N ++   P
Sbjct: 344 ----VSSLANLTNINWLSAGHNQISDLTP 368

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 71.2 bits (173), Expect = 4e-14
 Identities = 58/290 (20%), Positives = 105/290 (36%), Gaps = 27/290 (9%)

Query: 1   SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGT 60
            L L+ ++            K L  L L NN ++   P +   +  LE L LS N+L   
Sbjct: 35  LLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL 94

Query: 61  VSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKL 120
             ++      Q L    +  + V K   N +    +  L               Q  KKL
Sbjct: 95  PEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180
            Y+ I+ T I+  IP+G   S+     L++ GN+I                  + L  + 
Sbjct: 153 SYIRIADTNIT-TIPQGLPPSL---TELHLDGNKITK-------------VDAASLKGLN 195

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           +L+   LS +    +  G   +          N+    +P    +   ++++ L NNN +
Sbjct: 196 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 255

Query: 241 G------SLPMSIGALNSLMSLNLRNNRLS--GIIPTSFRNLSILKALDM 282
                    P       S   ++L +N +    I P++FR + +  A+ +
Sbjct: 256 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.8 bits (172), Expect = 5e-14
 Identities = 46/309 (14%), Positives = 99/309 (32%), Gaps = 52/309 (16%)

Query: 199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNL 258
           ++   +   L L  N  +E     + N   L  L L NN  +   P +   L  L  L L
Sbjct: 27  KDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL 86

Query: 259 RNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI 318
             N+L  +     + L  L+  +    ++  ++   +      ++ L     K  G    
Sbjct: 87  SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL--NQMIVVELGTNPLKSSGIENG 144

Query: 319 QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALL 378
               +  L  + +A  +++ TIP                                     
Sbjct: 145 AFQGMKKLSYIRIADTNIT-TIP------------------------------------- 166

Query: 379 VTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV 438
                      +   +  + +  N  +      +  L  L  L LS N  +     ++  
Sbjct: 167 ---------QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN 217

Query: 439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGA--SSFAG 496
              +  L  + N+L  ++P  +++  ++  + L NNN++    +      +    +S++G
Sbjct: 218 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSG 276

Query: 497 NDLCGAPLS 505
             L   P+ 
Sbjct: 277 VSLFSNPVQ 285

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 46/271 (16%), Positives = 92/271 (33%), Gaps = 28/271 (10%)

Query: 229 LRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV 288
           LR++   +      +P  +        L+L+NN+++ I    F+NL  L  L +  N++ 
Sbjct: 12  LRVVQCSDLGLE-KVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 68

Query: 289 GNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFS 348
              P        +L  L L  N+           L  L++ +     +  ++   +N   
Sbjct: 69  KISPGAFAP-LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMI 127

Query: 349 AMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEI 408
            +    +   +SGI   +                        +  +  I I+  N +   
Sbjct: 128 VVELGTNPLKSSGIENGAFQG---------------------MKKLSYIRIADTNIT--- 163

Query: 409 PVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNY 468
            +       L  L+L  N  T     ++  + ++  L  S N +S     S++N   L  
Sbjct: 164 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRE 223

Query: 469 LNLSNNNLNGEIPSSTQLQSFGASSFAGNDL 499
           L+L+NN L          +         N++
Sbjct: 224 LHLNNNKLVKVPGGLADHKYIQVVYLHNNNI 254

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.5 bits (153), Expect = 1e-11
 Identities = 53/273 (19%), Positives = 84/273 (30%), Gaps = 25/273 (9%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
                LDL NN +          + NL  L L NNK++       F  L +L       N
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGA-FAPLVKLERLYLSKN 89

Query: 81  SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
            L            +L   E     +       L     +  L  +  + S      F  
Sbjct: 90  QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVV-ELGTNPLKSSGIENGAFQG 148

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
            + +  Y+ ++   I          ++P    PSL  +   L  N ++      +     
Sbjct: 149 -MKKLSYIRIADTNI---------TTIPQGLPPSL--TELHLDGNKITKVDAASLKG--- 193

Query: 201 FSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRN 260
              N+  L LS N  S        N P LR L+L NN      P  +     +  + L N
Sbjct: 194 -LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHN 251

Query: 261 NRLSGIIPTSF------RNLSILKALDMGENEL 287
           N +S I    F         +    + +  N +
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPV 284

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.9 bits (141), Expect = 4e-10
 Identities = 45/246 (18%), Positives = 90/246 (36%), Gaps = 19/246 (7%)

Query: 93  PFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSG 152
           P   A L+L++  +        ++ K L+ L + + +IS   P  F   + + + L +S 
Sbjct: 30  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-LVKLERLYLSK 88

Query: 153 NQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK 212
           NQ+     K       L    + +  +     N L+  I   +               + 
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT-------------NP 135

Query: 213 NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272
              S      +    +L  + + + N T    +  G   SL  L+L  N+++ +   S +
Sbjct: 136 LKSSGIENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLK 192

Query: 273 NLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVA 332
            L+ L  L +  N +       +      L  L+L +NK     P  L     +Q++ + 
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLH 250

Query: 333 YNSLSG 338
            N++S 
Sbjct: 251 NNNISA 256

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 43/274 (15%), Positives = 86/274 (31%), Gaps = 10/274 (3%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI 291
            +        ++P+ I A  +   + L  NR+S +   SFR    L  L +  N L    
Sbjct: 16  TSCPQQGLQ-AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 292 PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA 351
                       +    + +     P     LG L  L +    L    P      +A+ 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 352 TTDSSDPNSGIFYASSGDNEIVEDALLVTK----GFLVEYNSILNLVRSIDISKNNFSGE 407
                D         +  +      L +               L+ +  + + +N  +  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192

Query: 408 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLN 467
            P    +L  L +L L  N  +    + +  +R+++ L  + N       ++    ++L 
Sbjct: 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQ 251

Query: 468 YLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCG 501
               S++ +   +P     +       A NDL G
Sbjct: 252 KFRGSSSEVPCSLPQRLAGRDL--KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.3 bits (139), Expect = 6e-10
 Identities = 47/256 (18%), Positives = 94/256 (36%), Gaps = 8/256 (3%)

Query: 227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENE 286
              + + L  N  +     S  A  +L  L L +N L+ I   +F  L++L+ LD+ +N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 287 LVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINN 346
            + ++         RL  L+L         P     L +LQ L +  N+L         +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151

Query: 347 FSAMATTD-SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSI---LNLVRSIDISKN 402
              +       +  S +   +      ++  LL        +      L  + ++ +  N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211

Query: 403 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462
           N S      +  L+ LQ L L+ N +         +   ++    S++++   +PQ ++ 
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVC-DCRARPLWAWLQKFRGSSSEVPCSLPQRLAG 270

Query: 463 LSFLNYLNLSNNNLNG 478
                   L+ N+L G
Sbjct: 271 RDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.9 bits (138), Expect = 9e-10
 Identities = 42/270 (15%), Positives = 74/270 (27%), Gaps = 17/270 (6%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
               + + L  N ++     S     NL  L L +N L    +           +  +  
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
             L       +    +L  L L  C L    P   +    L YL +    + A     F 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
           + +    +L + GN+I         P        SL      L  N ++    H      
Sbjct: 151 D-LGNLTHLFLHGNRISS------VPERAFRGLHSL--DRLLLHQNRVAHVHPHAFRDLG 201

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
                        N+ S    +       L+ L L +N +             L      
Sbjct: 202 RLMTLYL----FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGS 256

Query: 260 NNRLSGIIPTSFRNLSILKALDMGENELVG 289
           ++ +   +P       +     +  N+L G
Sbjct: 257 SSEVPCSLPQRLAGRDL---KRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 1e-06
 Identities = 43/211 (20%), Positives = 66/211 (31%), Gaps = 25/211 (11%)

Query: 220 PDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA 279
           P  +    RL  L+L         P     L +L  L L++N L  +   +FR+L  L  
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTH 157

Query: 280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGT 339
           L +  N +   +P         L  L L  N+     P     LG L  L +  N+LS  
Sbjct: 158 LFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216

Query: 340 IPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI 399
               +    A+     +            DN  V D              +   ++    
Sbjct: 217 PTEALAPLRALQYLRLN------------DNPWVCDCRAR---------PLWAWLQKFRG 255

Query: 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTG 430
           S +     +P     L G     L+ N   G
Sbjct: 256 SSSEVPCSLP---QRLAGRDLKRLAANDLQG 283

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 1e-08
 Identities = 34/284 (11%), Positives = 94/284 (33%), Gaps = 23/284 (8%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           DL+   L   +      G   S+ +   +  ++   + + +   +  R++ ++L N+   
Sbjct: 6   DLTGKNLHPDVT-----GRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIE 59

Query: 241 G-SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETF 299
             +L   +   + L +L+L   RLS  I  +    S L  L++               + 
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS 119

Query: 300 SRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPN 359
              +     S  F          +  +       N     +     N      +      
Sbjct: 120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN-----LSGYRKNLQKSDLSTLVRRC 174

Query: 360 SGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISK-NNFSGEIPVEVTNLQGL 418
             + +    D+ ++++          +    LN ++ + +S+  +   E  +E+  +  L
Sbjct: 175 PNLVHLDLSDSVMLKNDC-------FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTL 227

Query: 419 QSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSN 462
           ++L +   +  G +     +  ++  L  + +  +     ++ N
Sbjct: 228 KTLQVFGIVPDGTLQL---LKEALPHLQINCSHFTTIARPTIGN 268

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-05
 Identities = 23/208 (11%), Positives = 64/208 (30%), Gaps = 7/208 (3%)

Query: 393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
           L +++D++  N   ++   + + QG+ +     +     + ++    R ++ +D S + +
Sbjct: 1   LWQTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFR-VQHMDLSNSVI 58

Query: 453 SG-QIPQSMSNLSFLNYLNLSNNNLNGEIPSS----TQLQSFGASSFAGNDLCGAPLSNC 507
               +   +S  S L  L+L    L+  I ++    + L     S  +G           
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLS 118

Query: 508 TEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYCHF 567
           +   +            +         +  ++    + G+   +    +    R      
Sbjct: 119 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178

Query: 568 LDRLWDGCFVRKCYQIFHVCTCVFYVLN 595
              L D   ++               L+
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLS 206

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-05
 Identities = 34/254 (13%), Positives = 72/254 (28%), Gaps = 9/254 (3%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
           + + A     + ++ P+         ++++DLSN+ +  +         ++L      G 
Sbjct: 23  QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 81

Query: 81  SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWN 140
            L   I         L  L L  C     F L           +++ +       +    
Sbjct: 82  RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141

Query: 141 SIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGEN 200
           ++          N          S    L+     L  +    +  L    F        
Sbjct: 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF---- 197

Query: 201 FSKNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLR 259
               ++ L LS+      +        P L+ L +      G+L +      +L  L + 
Sbjct: 198 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK---EALPHLQIN 254

Query: 260 NNRLSGIIPTSFRN 273
            +  + I   +  N
Sbjct: 255 CSHFTTIARPTIGN 268

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 48.7 bits (114), Expect = 9e-07
 Identities = 33/292 (11%), Positives = 79/292 (27%), Gaps = 17/292 (5%)

Query: 13  LTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNGTVSEI--HF 66
           +   L    +++ + LS NT+       +  ++    +LE  + S+        EI    
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 67  LNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDIS 126
             L Q L+     +++    N       +     L          L            I+
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 127 STRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNA 186
                  + +   N+      +        G + ++           ++      +    
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 187 LSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMS 246
           +   +   +   +             +  S  +     +WP LR L L +   +     +
Sbjct: 203 IEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAA 262

Query: 247 IG------ALNSLMSLNLRNNRLSGIIPTS-----FRNLSILKALDMGENEL 287
           +           L +L L+ N +      +        +  L  L++  N  
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 4e-04
 Identities = 30/325 (9%), Positives = 85/325 (26%), Gaps = 24/325 (7%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGN 236
            L  +A++      +        +++ + LS N    +    + +   +   L +    +
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 237 NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIG 296
                       AL  L+   L+  +L  +  +        +   +        +     
Sbjct: 69  IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYL 128

Query: 297 ETFSRL--MILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTD 354
                       +           +      L+ +    N L     +            
Sbjct: 129 HNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLL 188

Query: 355 SSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTN 414
            +                 E    +    L     +  L    +   +  S  + + + +
Sbjct: 189 HTVKMVQNGI-------RPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 241

Query: 415 LQGLQSLNLSHNLFTGRIPDNIGVM------RSIESLDFSANQLSGQIPQSM-----SNL 463
              L+ L L+  L + R    +           +++L    N++     +++       +
Sbjct: 242 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301

Query: 464 SFLNYLNLSNNNLNGEIPSSTQLQS 488
             L +L L+ N  + E     +++ 
Sbjct: 302 PDLLFLELNGNRFSEEDDVVDEIRE 326

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.1 bits (89), Expect = 0.001
 Identities = 35/326 (10%), Positives = 91/326 (27%), Gaps = 26/326 (7%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN 80
           K+L+   ++       +   L +  +++ + LS N +    +      L++ +  +    
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARW----LSENIASKKDLE 62

Query: 81  SLVFKINPNWVPPFQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPRGFW 139
              F          ++            + P L         +   +   +   + +   
Sbjct: 63  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
                     +               +V      +          N L         +  
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNL---------GNNNFTGSLPMSIGAL 250
              + +  +K+ +N    +  +  +         L           +  + +L +++ + 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSW 242

Query: 251 NSLMSLNLRNNRLSGIIPT------SFRNLSILKALDMGENELVGN----IPTWIGETFS 300
            +L  L L +  LS           S      L+ L +  NE+  +    + T I E   
Sbjct: 243 PNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP 302

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSL 326
            L+ L L  N+F  +    +  +  +
Sbjct: 303 DLLFLELNGNRF-SEEDDVVDEIREV 327

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 48.7 bits (114), Expect = 1e-06
 Identities = 40/328 (12%), Positives = 81/328 (24%), Gaps = 34/328 (10%)

Query: 21  KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG- 79
           +    L+L+N  ++  +P       +LE L  S N L         L    +        
Sbjct: 38  RQAHELELNNLGLSS-LPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 80  ----NSLVFKINPNWVPPFQLAFLELRSC---------------HLGPRFPLWLQSQKKL 120
                 L +    N                                     +   + +  
Sbjct: 94  SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE 153

Query: 121 YYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIF 180
              ++ +      I     +     D      + + G     + P +  +   + + +  
Sbjct: 154 ELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADN 213

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
           +L                 +              F +   + +     L       N  +
Sbjct: 214 NLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASS 273

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
             +        SL  LN+ NN+L   +P        L+ L    N L       + E   
Sbjct: 274 NEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-----AEVPELPQ 324

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQI 328
            L  L++  N     FP     +  L++
Sbjct: 325 NLKQLHVEYNPLRE-FPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 400 SKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQS 459
             N  S EI         L+ LN+S+N     +P        +E L  S N L+ ++P+ 
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLA-EVPEL 322

Query: 460 MSNLSFLNYLNLSNNNLNG--EIPSS 483
             NL     L++  N L    +IP S
Sbjct: 323 PQNLK---QLHVEYNPLREFPDIPES 345

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 32/210 (15%), Positives = 67/210 (31%), Gaps = 10/210 (4%)

Query: 246 SIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMIL 305
            +  + S + +N     L+ + P   ++ +I   L + EN L       +   ++RL  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDLPKDTTI---LHLSENLLYTFSLATLMP-YTRLTQL 60

Query: 306 NLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA 365
           NL   +           L  L  LD+++N L           +      S +  + +   
Sbjct: 61  NLDRAELT--KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118

Query: 366 SSGDNEIVEDALLVTKGFLVEYNSI---LNLVRSIDISKNNFSGEIPVEVTNLQGLQSLN 422
           +      +++  L           +      +  + ++ NN +      +  L+ L +L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 423 LSHNLFTGRIPDNIGVMRSIESLDFSANQL 452
           L  N     IP        +       N  
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 5e-06
 Identities = 28/209 (13%), Positives = 55/209 (26%), Gaps = 6/209 (2%)

Query: 270 SFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQIL 329
               ++    ++  +  L   +P  +        IL+L  N  +      L     L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 330 DVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNS 389
           ++    L+                  +   S      +     V D        L     
Sbjct: 61  NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL 120

Query: 390 ILNLVRSIDISKNNFSGEIPVEVTNLQGLQSL-NLSHNLFTGRIPDNIGVMRSIESLDFS 448
                      K N    +P  +          +L++N  T      +  + ++++L   
Sbjct: 121 RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQ 180

Query: 449 ANQLSGQIPQSMSNLSFLNYLNLSNNNLN 477
            N L   IP+       L +  L  N   
Sbjct: 181 ENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 6e-05
 Identities = 35/193 (18%), Positives = 57/193 (29%), Gaps = 17/193 (8%)

Query: 93  PFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSG 152
           P     L L    L       L    +L  L++    ++     G    +   D  +   
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 153 NQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK 212
             +        + +V  ++   L                  L          ++ L L  
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTS----------------LPLGALRGLGELQELYLKG 133

Query: 213 NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFR 272
           N      P      P+L  L+L NNN T      +  L +L +L L+ N L   IP  F 
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFF 192

Query: 273 NLSILKALDMGEN 285
              +L    +  N
Sbjct: 193 GSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 0.003
 Identities = 34/233 (14%), Positives = 68/233 (29%), Gaps = 21/233 (9%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
            K    L LS N +      +L     L  L+L   +L     +     L  L +     
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQL 89

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
            SL                    +           + Q+     +         +P G  
Sbjct: 90  QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-----TLPPGLL 144

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
               + + L+++ N +                   LL  + +L    L  +  + I +G 
Sbjct: 145 TPTPKLEKLSLANNNLTE-------------LPAGLLNGLENLDTLLLQENSLYTIPKGF 191

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNS 252
             S  + F  L  N +   + +C + + R  + +   N +     + + A+ S
Sbjct: 192 FGSHLLPFAFLHGNPW---LCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTS 241

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.4 bits (85), Expect = 0.003
 Identities = 44/251 (17%), Positives = 68/251 (27%), Gaps = 18/251 (7%)

Query: 118 KKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLG 177
           K    L +S   +             +   LN+   ++         P            
Sbjct: 31  KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV----------- 78

Query: 178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNN 237
               L    LS +    +         +  L +S N  +            L+ L L  N
Sbjct: 79  ----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134

Query: 238 NFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGE 297
                 P  +     L  L+L NN L+ +       L  L  L + EN L   IP     
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFG 193

Query: 298 TFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD 357
               L    L  N +  +  I   R       +  Y    G   + + +  A    D+SD
Sbjct: 194 -SHLLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSD 252

Query: 358 PNSGIFYASSG 368
                 Y   G
Sbjct: 253 KFPVYKYPGKG 263

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.9 bits (109), Expect = 5e-06
 Identities = 48/471 (10%), Positives = 103/471 (21%), Gaps = 39/471 (8%)

Query: 23  LRALDLSNNTVN-GPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS 81
           +++LD+    ++       L  +   + + L +  L    +E    +++  L        
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGL----TEARCKDISSAL-------- 51

Query: 82  LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNS 141
              ++NP       LA L LRS  LG      +    +     I    +      G    
Sbjct: 52  ---RVNPA------LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG 102

Query: 142 IFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENF 201
           +       +   Q           +            + +   +         +      
Sbjct: 103 VLSSTLRTLPTLQELHLSDNLLGDAGL--------QLLCEGLLDPQCRLEKLQLEYCSLS 154

Query: 202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN 261
           + + E L        +       N                  P  + AL         +N
Sbjct: 155 AASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDN 214

Query: 262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLC 321
                   + +      AL   +   VG      G       +  L   +          
Sbjct: 215 CRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGD 274

Query: 322 RLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK 381
               L+  +                   +  T                +         + 
Sbjct: 275 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS 334

Query: 382 GFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGR----IPDNIG 437
                   +   + +  +                  L+ L L+    +      +   + 
Sbjct: 335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLL 394

Query: 438 VMRSIESLDFSANQLSGQIPQSMS-----NLSFLNYLNLSNNNLNGEIPSS 483
              S+  LD S N L       +          L  L L +   + E+   
Sbjct: 395 ANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDR 445

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 9e-06
 Identities = 25/207 (12%), Positives = 51/207 (24%), Gaps = 6/207 (2%)

Query: 391 LNLVRSIDISKNNFSGEIPVEV-TNLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESL 445
           L++ +S+DI     S     E+   LQ  Q + L     T      I   + V  ++  L
Sbjct: 2   LDI-QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 446 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGNDLCGAPLS 505
           +  +N+L       +          +   +L     +        ++      L    LS
Sbjct: 61  NLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLS 120

Query: 506 NCTEKNILIPEDENGSGNEDDDEDGVDWLLYISMALGFVVGFWCFIGPLLIKRRWRYKYC 565
           +    +  +     G  +     + +        A                K        
Sbjct: 121 DNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND 180

Query: 566 HFLDRLWDGCFVRKCYQIFHVCTCVFY 592
                +   C   K          +  
Sbjct: 181 INEAGVRVLCQGLKDSPCQLEALKLES 207

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (102), Expect = 3e-05
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 215 FSEDIPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSLNLRNNRLSGIIPTS 270
             E           LR+L L + + +     SL  ++ A +SL  L+L NN L       
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 271 F-----RNLSILKALDMGENELVGNIPTWIGE 297
                 +   +L+ L + +      +   +  
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 448

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 9e-04
 Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 5/75 (6%)

Query: 202 SKNIEFLKLSKNHFS-EDIPDCWMNWPRLRMLNLGNNNFTG----SLPMSIGALNSLMSL 256
           S +I+ L +     S     +      + +++ L +   T      +  ++    +L  L
Sbjct: 1   SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL 60

Query: 257 NLRNNRLSGIIPTSF 271
           NLR+N L  +     
Sbjct: 61  NLRSNELGDVGVHCV 75

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.003
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 9/85 (10%)

Query: 203 KNIEFLKLSKNHFS----EDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGA-----LNSL 253
             +  L L+    S      +    +    LR L+L NN    +  + +          L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 254 MSLNLRNNRLSGIIPTSFRNLSILK 278
             L L +   S  +    + L   K
Sbjct: 429 EQLVLYDIYWSEEMEDRLQALEKDK 453

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 27/110 (24%), Positives = 46/110 (41%), Gaps = 7/110 (6%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           R+L+L + + T      +  L  +  L+L +NRL  + P     L+ L+ L++ +     
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPP----ALAALRCLEVLQASDNA 54

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQ-LCRLGSLQILDVAYNSLSG 338
                      RL  L L +N+      IQ L     L +L++  NSL  
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 3e-05
 Identities = 21/116 (18%), Positives = 39/116 (33%), Gaps = 24/116 (20%)

Query: 395 RSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP--------------------- 433
           R + ++  + +  +   +  L  +  L+LSHN      P                     
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58

Query: 434 DNIGVMRSIESLDFSANQL-SGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQS 488
           D +  +  ++ L    N+L      Q + +   L  LNL  N+L  E     +L  
Sbjct: 59  DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.4 bits (86), Expect = 8e-04
 Identities = 20/109 (18%), Positives = 39/109 (35%), Gaps = 7/109 (6%)

Query: 24  RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLV 83
           R L L++  +   +   L Q+  + +LDLS+N+L      +  L      +     +   
Sbjct: 1   RVLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPALAALR----CLEVLQASDNA 54

Query: 84  FKINPNWVPPFQLAFLELRSCHL-GPRFPLWLQSQKKLYYLDISSTRIS 131
            +         +L  L L +  L        L S  +L  L++    + 
Sbjct: 55  LENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 103

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.8 bits (82), Expect = 0.003
 Identities = 22/127 (17%), Positives = 35/127 (27%), Gaps = 15/127 (11%)

Query: 179 IFDLSNNALSG--SIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
           +  L++  L+    +  L          +  L LS N      P          +  L  
Sbjct: 2   VLHLAHKDLTVLCHLEQL--------LLVTHLDLSHNRLRALPPALAALR---CLEVLQA 50

Query: 237 NNFTGSLPMSIGALNSLMSLNLRNNRLSGI-IPTSFRNLSILKALDMGENELVGNIPTWI 295
           ++        +  L  L  L L NNRL          +   L  L++  N L        
Sbjct: 51  SDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQ 109

Query: 296 GETFSRL 302
                 L
Sbjct: 110 ERLAEML 116

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.4 bits (103), Expect = 9e-06
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 8/156 (5%)

Query: 181 DLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFT 240
            L++N                  ++  L+L +N  +   P+ +     ++ L LG N   
Sbjct: 35  LLNDNE---LGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 241 GSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFS 300
                    L+ L +LNL +N++S ++P SF +L+ L +L++  N    N        + 
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWL 151

Query: 301 RLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL 336
           R    +L         P    ++  +QI D+ ++  
Sbjct: 152 RK--KSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 20/217 (9%), Positives = 51/217 (23%), Gaps = 8/217 (3%)

Query: 20  FKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHG 79
                 +    + V   +  +   +  +  L      +  T+  +    L  L+      
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVT-TIEGVQ--YLNNLIGLELKD 72

Query: 80  NSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFW 139
           N +        +       L                 +         +            
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 140 NSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE 199
                 + +            ++ S     ++  + L ++  L+      +    I    
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 200 NFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGN 236
           +   N+  + L  N  S+  P    N   L ++ L N
Sbjct: 193 SL-PNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 32/225 (14%), Positives = 74/225 (32%), Gaps = 15/225 (6%)

Query: 249 ALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLR 308
           AL + + +    + ++  +  +  +L  +  L      +   I     +  + L+ L L+
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVT-TIEGV--QYLNNLIGLELK 71

Query: 309 SNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSG 368
            N+     P++     +   L          I    +  +   T+      + +      
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG---- 127

Query: 369 DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLF 428
                   L +    +   + +  L     +S  N        + NL  L +L    N  
Sbjct: 128 --LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKI 185

Query: 429 TGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN 473
           +   P  +  + ++  +    NQ+S   P  ++N S L  + L+N
Sbjct: 186 SDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 2e-04
 Identities = 25/220 (11%), Positives = 68/220 (30%), Gaps = 16/220 (7%)

Query: 232 LNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNI 291
           +  G +N T ++  +   L+ + +L+     ++ I     + L+ L  L++ +N++    
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQI---- 75

Query: 292 PTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMA 351
                     L  +       +    +               ++    +       +   
Sbjct: 76  --TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 352 TTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVE 411
                +  + I   +   N             L    ++  L  ++    N  S   P+ 
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKL-TTLKADDNKISDISPLA 192

Query: 412 VTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQ 451
             +L  L  ++L +N  +   P  +    ++  +  + NQ
Sbjct: 193 --SLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT-NQ 227

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 27/253 (10%), Positives = 71/253 (28%), Gaps = 23/253 (9%)

Query: 230 RMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           R+     +  T  +P  +    + + L     +L  I   +F     L+ +++ +N+++ 
Sbjct: 11  RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 290 NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSA 349
            I   +     +L  + +           +  +                     +     
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ-----------------NLPNLQYLLI 110

Query: 350 MATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIP 409
             T     P+    ++       ++D + +       +  +      + ++KN       
Sbjct: 111 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN 170

Query: 410 VEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL 469
                 Q  +     +N       D          LD S  ++       + NL  L   
Sbjct: 171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 230

Query: 470 NLSNNNLNGEIPS 482
           +  N     ++P+
Sbjct: 231 STYN---LKKLPT 240

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 9e-05
 Identities = 15/91 (16%), Positives = 25/91 (27%)

Query: 192 FHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALN 251
                     S     L L+KN   E     +       +    NNN            +
Sbjct: 142 TIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGAS 201

Query: 252 SLMSLNLRNNRLSGIIPTSFRNLSILKALDM 282
             + L++   R+  +      NL  L+A   
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (98), Expect = 3e-05
 Identities = 28/143 (19%), Positives = 47/143 (32%), Gaps = 12/143 (8%)

Query: 173 PSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK-NHFSEDIPDCWMNWPRLRM 231
             ++   +D S  AL            +       + L++ +  +  +     N P L  
Sbjct: 13  KLIMSKRYDGSQQALDLKGLRSD---PDLVAQNIDVVLNRRSSMAATLRIIEENIPELLS 69

Query: 232 LNLGNNNFTG--SLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVG 289
           LNL NN       +   +    +L  LNL  N L             L+ L +  N L  
Sbjct: 70  LNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD 129

Query: 290 NIP------TWIGETFSRLMILN 306
                    + I E F +L+ L+
Sbjct: 130 TFRDQSTYISAIRERFPKLLRLD 152

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.004
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 225 NWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE 284
           N  R R L+L        +      L+   +++  +N +  +       L  LK L +  
Sbjct: 16  NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLLVNN 72

Query: 285 NELVGNIPTW 294
           N +       
Sbjct: 73  NRICRIGEGL 82

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	596
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.96
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.91
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.78
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.74
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.61
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.51
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.47
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.43
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.33
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.19
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.21
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.75
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.61
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.19
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.77

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=3.1e-31  Score=260.68  Aligned_cols=259  Identities=32%  Similarity=0.579  Sum_probs=236.4

Q ss_pred             CCccEEeCcCCcCCC--CCCcccCCCCCCcEEEccc-ccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCE
Q 044353          203 KNIEFLKLSKNHFSE--DIPDCWMNWPRLRMLNLGN-NNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKA  279 (596)
Q Consensus       203 ~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  279 (596)
                      .+++.|+++++.+.+  .+|..++++++|++|++++ |.+++.+|..|.++++|++|+|++|++.+..+..+..+++|+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            479999999999987  4788999999999999987 7899899999999999999999999999999999999999999


Q ss_pred             EEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCC-cEEeCCCCcCcccCCccccccccCcccCCCCC
Q 044353          280 LDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSL-QILDVAYNSLSGTIPRCINNFSAMATTDSSDP  358 (596)
Q Consensus       280 L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~  358 (596)
                      +++++|.+.+.+|..+. .++.++.+++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.          
T Consensus       130 l~l~~N~~~~~~p~~l~-~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~----------  198 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSIS-SLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN----------  198 (313)
T ss_dssp             EECCSSEEESCCCGGGG-GCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC----------
T ss_pred             cccccccccccCchhhc-cCcccceeeccccccccccccccccccccccccccccccccccccccccccc----------
Confidence            99999999888888887 79999999999999998999988888776 8999999999988887765432          


Q ss_pred             CCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccC
Q 044353          359 NSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGV  438 (596)
Q Consensus       359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  438 (596)
                                                         ...++++++...+.+|..+..+++++.+++++|.+.+.++ .++.
T Consensus       199 -----------------------------------~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~  242 (313)
T d1ogqa_         199 -----------------------------------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL  242 (313)
T ss_dssp             -----------------------------------CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCC
T ss_pred             -----------------------------------cccccccccccccccccccccccccccccccccccccccc-cccc
Confidence                                               3468899999999999999999999999999999986655 5888


Q ss_pred             CCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCCCCCCC
Q 044353          439 MRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAPLSNCT  508 (596)
Q Consensus       439 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~~~~c~  508 (596)
                      +++|+.|+|++|++++.+|+.+.++++|++|+|++|+++|.+|....+..++.+.+.+|+ +||.|+..|+
T Consensus       243 ~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp~c~  313 (313)
T d1ogqa_         243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLPACT  313 (313)
T ss_dssp             CTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSSCCC
T ss_pred             ccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCCCCC
Confidence            999999999999999999999999999999999999999999988889999999999999 9999988784

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.96  E-value=4.2e-27  Score=238.13  Aligned_cols=341  Identities=21%  Similarity=0.243  Sum_probs=204.7

Q ss_pred             CCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEE
Q 044353           44 IANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYL  123 (596)
Q Consensus        44 l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  123 (596)
                      +.+|++|+++++.|+ .++  .+..+++|++|++++|.++...  .+..+++|++|++++|++.+..  .++++++|+.|
T Consensus        43 l~~l~~L~l~~~~I~-~l~--gl~~L~nL~~L~Ls~N~l~~l~--~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L  115 (384)
T d2omza2          43 LDQVTTLQADRLGIK-SID--GVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGL  115 (384)
T ss_dssp             HTTCCEEECCSSCCC-CCT--TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEE
T ss_pred             hCCCCEEECCCCCCC-Ccc--ccccCCCCCEEeCcCCcCCCCc--cccCCccccccccccccccccc--ccccccccccc
Confidence            344555555555544 332  3444555555555555544322  2445555555555555554322  25556666666


Q ss_pred             EcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCC
Q 044353          124 DISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSK  203 (596)
Q Consensus       124 ~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~  203 (596)
                      +++++.+++..+.   .....+.......+.+..............        ..........         ..+....
T Consensus       116 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~~~~~~~~~---------~~~~~~~  175 (384)
T d2omza2         116 TLFNNQITDIDPL---KNLTNLNRLELSSNTISDISALSGLTSLQQ--------LSFGNQVTDL---------KPLANLT  175 (384)
T ss_dssp             ECCSSCCCCCGGG---TTCTTCSEEEEEEEEECCCGGGTTCTTCSE--------EEEEESCCCC---------GGGTTCT
T ss_pred             ccccccccccccc---cccccccccccccccccccccccccccccc--------cccccccchh---------hhhcccc
Confidence            6666655432221   112344555555544422111111000000        0000000000         1111233


Q ss_pred             CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEcc
Q 044353          204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMG  283 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  283 (596)
                      .........+...  ....+..+++++.+++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.++++
T Consensus       176 ~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~  249 (384)
T d2omza2         176 TLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLA  249 (384)
T ss_dssp             TCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             ccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCCc--chhhcccccchhccc
Confidence            4444555554433  33456677788888888888775443  45567888888888887743  356778888888888


Q ss_pred             CCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcc
Q 044353          284 ENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIF  363 (596)
Q Consensus       284 ~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~  363 (596)
                      +|.+. .++. +. .+++|++++++++.+.+..  .+..++.++.+++..|.+++.  ..+.                  
T Consensus       250 ~n~l~-~~~~-~~-~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~------------------  304 (384)
T d2omza2         250 NNQIS-NLAP-LS-GLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPIS------------------  304 (384)
T ss_dssp             SSCCC-CCGG-GT-TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGG------------------
T ss_pred             cCccC-CCCc-cc-ccccCCEeeccCcccCCCC--ccccccccccccccccccccc--cccc------------------
Confidence            88886 3433 22 5778888888888877432  366778888888888877631  1121                  


Q ss_pred             ccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCC
Q 044353          364 YASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIE  443 (596)
Q Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  443 (596)
                                                .++.++.|++++|.+++..  .+..+++|++|++++|++++ ++ .++.+++|+
T Consensus       305 --------------------------~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~  354 (384)
T d2omza2         305 --------------------------NLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNIN  354 (384)
T ss_dssp             --------------------------GCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCC
T ss_pred             --------------------------hhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCC
Confidence                                      2455788899999888543  37889999999999999984 44 588999999


Q ss_pred             EEECCCCcCcccCCccccCCCCCCEEecccc
Q 044353          444 SLDFSANQLSGQIPQSMSNLSFLNYLNLSNN  474 (596)
Q Consensus       444 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N  474 (596)
                      +|++++|++++..|  +.++++|+.|++++|
T Consensus       355 ~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             EEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            99999999997654  888999999999987

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.95  E-value=1.5e-27  Score=234.07  Aligned_cols=252  Identities=25%  Similarity=0.407  Sum_probs=215.5

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcC-CcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSK-NHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSL  256 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  256 (596)
                      +.++++++.+.|.  ..++..++++++|++|++++ |.+.+.+|..|+++++|++|++++|++.+..+..+..+..|+.+
T Consensus        53 ~~L~L~~~~l~g~--~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          53 NNLDLSGLNLPKP--YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEECCCCSSC--EECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred             EEEECCCCCCCCC--CCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence            3455555555442  12334455689999999997 88998999999999999999999999999899999999999999


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhccc-ccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCc
Q 044353          257 NLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSR-LMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNS  335 (596)
Q Consensus       257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~  335 (596)
                      ++++|.+.+..|..+..+++++.+++++|.+.+.+|..+. .+.. ++.+++++|++++..|..+..+.. ..+++..+.
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~  208 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNM  208 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSE
T ss_pred             ccccccccccCchhhccCcccceeeccccccccccccccc-ccccccccccccccccccccccccccccc-ccccccccc
Confidence            9999999999999999999999999999999989999887 4555 489999999999888888887654 579999999


Q ss_pred             CcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCc
Q 044353          336 LSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNL  415 (596)
Q Consensus       336 l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  415 (596)
                      ..+.+|..+..                                            +++++.+++++|.+.+.++ .+..+
T Consensus       209 ~~~~~~~~~~~--------------------------------------------~~~l~~l~~~~~~l~~~~~-~~~~~  243 (313)
T d1ogqa_         209 LEGDASVLFGS--------------------------------------------DKNTQKIHLAKNSLAFDLG-KVGLS  243 (313)
T ss_dssp             EEECCGGGCCT--------------------------------------------TSCCSEEECCSSEECCBGG-GCCCC
T ss_pred             ccccccccccc--------------------------------------------ccccccccccccccccccc-ccccc
Confidence            88877766654                                            3447889999999986554 68889


Q ss_pred             ccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccC
Q 044353          416 QGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGE  479 (596)
Q Consensus       416 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~  479 (596)
                      ++|+.|+|++|++++.+|+.++.+++|++|+|++|++++.+|+ +..+++|+.+++++|+..|.
T Consensus       244 ~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEES
T ss_pred             cccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccC
Confidence            9999999999999999999999999999999999999998885 67889999999999985443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.1e-25  Score=227.58  Aligned_cols=354  Identities=21%  Similarity=0.282  Sum_probs=258.5

Q ss_pred             ecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeee
Q 044353            4 LRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLV   83 (596)
Q Consensus         4 L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~   83 (596)
                      ++.+.+++.+.  .+.+.+|++|+++++.|++.  +.+..+++|++|+|++|+|+ .++  .+.++++|++|++++|.+.
T Consensus        29 l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~-~l~--~l~~L~~L~~L~L~~n~i~  101 (384)
T d2omza2          29 LGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT-DIT--PLKNLTKLVDILMNNNQIA  101 (384)
T ss_dssp             TTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCC-CCG--GGTTCTTCCEEECCSSCCC
T ss_pred             hCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCC-CCc--cccCCcccccccccccccc
Confidence            44555665443  35678999999999999864  46788999999999999998 565  4899999999999999987


Q ss_pred             eEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCC
Q 044353           84 FKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFD  163 (596)
Q Consensus        84 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~  163 (596)
                      ...  .+..+++|+.|++.++.+.+..+  ......+..+....+.+........ ....................    
T Consensus       102 ~i~--~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----  172 (384)
T d2omza2         102 DIT--PLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSG-LTSLQQLSFGNQVTDLKPLA----  172 (384)
T ss_dssp             CCG--GGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTT-CTTCSEEEEEESCCCCGGGT----
T ss_pred             ccc--ccccccccccccccccccccccc--ccccccccccccccccccccccccc-cccccccccccccchhhhhc----
Confidence            543  47889999999999998875444  3445677777777776653222211 11111122211111111100    


Q ss_pred             CCCCCccccCCCCC-ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc
Q 044353          164 SPSVPLITTPSLLG-SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS  242 (596)
Q Consensus       164 ~~~~~~~~~~~~~~-~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  242 (596)
                                .... .......+....      ......+++++.+++++|.+++..|  +..+++|++|++++|.++. 
T Consensus       173 ----------~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-  233 (384)
T d2omza2         173 ----------NLTTLERLDISSNKVSD------ISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-  233 (384)
T ss_dssp             ----------TCTTCCEEECCSSCCCC------CGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-
T ss_pred             ----------ccccccccccccccccc------ccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-
Confidence                      0011 222233332221      1222346889999999999987654  4567899999999999884 


Q ss_pred             CCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC
Q 044353          243 LPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR  322 (596)
Q Consensus       243 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  322 (596)
                      + +.+..+++|+.|++++|.+++..  .+..+++|++|+++++++. .++...  .++.++.+.+..|.+++.  ..+..
T Consensus       234 ~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~~~--~~~~l~~l~~~~n~l~~~--~~~~~  305 (384)
T d2omza2         234 I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NISPLA--GLTALTNLELNENQLEDI--SPISN  305 (384)
T ss_dssp             C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCGGGT--TCTTCSEEECCSSCCSCC--GGGGG
T ss_pred             c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCCccc--cccccccccccccccccc--cccch
Confidence            3 36788999999999999998654  4788999999999999997 555422  588999999999998752  35788


Q ss_pred             CCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCC
Q 044353          323 LGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN  402 (596)
Q Consensus       323 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n  402 (596)
                      +++++.|++++|++++..+  +..                                            +++|++|++++|
T Consensus       306 ~~~l~~L~ls~n~l~~l~~--l~~--------------------------------------------l~~L~~L~L~~n  339 (384)
T d2omza2         306 LKNLTYLTLYFNNISDISP--VSS--------------------------------------------LTKLQRLFFANN  339 (384)
T ss_dssp             CTTCSEEECCSSCCSCCGG--GGG--------------------------------------------CTTCCEEECCSS
T ss_pred             hcccCeEECCCCCCCCCcc--ccc--------------------------------------------CCCCCEEECCCC
Confidence            8999999999999985321  332                                            556899999999


Q ss_pred             cccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCC
Q 044353          403 NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSAN  450 (596)
Q Consensus       403 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  450 (596)
                      .+++ ++ .+.++++|++|++++|++++..|  +.++++|+.|+|++|
T Consensus       340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            9984 44 68999999999999999996554  889999999999998

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.1e-25  Score=214.08  Aligned_cols=249  Identities=20%  Similarity=0.209  Sum_probs=183.6

Q ss_pred             EEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccC-C
Q 044353          207 FLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGE-N  285 (596)
Q Consensus       207 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n  285 (596)
                      .++.++++++. +|..+.  +.+++|+|++|+++...+.+|.++++|++|++++|.+..+.+..+..+..++.++... +
T Consensus        15 ~v~c~~~~L~~-iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~   91 (284)
T d1ozna_          15 TTSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA   91 (284)
T ss_dssp             EEECCSSCCSS-CCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCCCCCCc-cCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccccccccccccccccc
Confidence            34555555553 343332  3567777777777766666677777777777777777777777777777777776654 3


Q ss_pred             cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc
Q 044353          286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA  365 (596)
Q Consensus       286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  365 (596)
                      .+. .++...+..+++|++|++++|.+....+..+...++|+.+++++|.+++..+..|..                   
T Consensus        92 ~~~-~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-------------------  151 (284)
T d1ozna_          92 QLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-------------------  151 (284)
T ss_dssp             TCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-------------------
T ss_pred             ccc-cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-------------------
Confidence            443 555555556777888888887777666666777778888888888887544444443                   


Q ss_pred             CCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEE
Q 044353          366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL  445 (596)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  445 (596)
                                               +++|+.|++++|.+++..+..|.++++|+.+++++|++++..|..|..+++|++|
T Consensus       152 -------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L  206 (284)
T d1ozna_         152 -------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL  206 (284)
T ss_dssp             -------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             -------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccc
Confidence                                     3347788888888887788889999999999999999998889999999999999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          446 DFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       446 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      ++++|++++..+..|..+++|++|++++|++.|.|+..+....++......+. .|..|
T Consensus       207 ~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~~l~~~~~~~~~~~C~~p  265 (284)
T d1ozna_         207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP  265 (284)
T ss_dssp             ECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred             cccccccccccccccccccccCEEEecCCCCCCCccchHHHHHHHhCcCCCCceEeCCc
Confidence            99999999888889999999999999999999998765444444444444343 45433

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.3e-23  Score=205.00  Aligned_cols=268  Identities=19%  Similarity=0.269  Sum_probs=192.3

Q ss_pred             CCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccC
Q 044353          119 KLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQG  198 (596)
Q Consensus       119 ~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~  198 (596)
                      ..+.++.++..++ .+|..+   .+++++|++++|+++...+.                                    .
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l---~~~l~~L~Ls~N~i~~l~~~------------------------------------~   50 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDL---PPDTALLDLQNNKITEIKDG------------------------------------D   50 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSC---CTTCCEEECCSSCCCCBCTT------------------------------------T
T ss_pred             cCCEEEecCCCCC-ccCCCC---CCCCCEEECcCCcCCCcChh------------------------------------H
Confidence            4456677776666 566654   25677777777776432221                                    1


Q ss_pred             CCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCC
Q 044353          199 ENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILK  278 (596)
Q Consensus       199 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  278 (596)
                      +..+++|++|++++|.+....|..|..++.|++|++++|+++ .+|..+  ...++.|++.+|.+..+.+..+.....+.
T Consensus        51 f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~  127 (305)
T d1xkua_          51 FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMI  127 (305)
T ss_dssp             TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCC
T ss_pred             hhccccccccccccccccccchhhhhCCCccCEecccCCccC-cCccch--hhhhhhhhccccchhhhhhhhhhcccccc
Confidence            223678888888888888777778888888888888888887 444433  35778888888888877777777788888


Q ss_pred             EEEccCCcccc-cCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          279 ALDMGENELVG-NIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       279 ~L~L~~n~l~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      .++...|.... ......+..+++|+++++++|.+. .+|..+  .++|+.|++++|...+..+..+..           
T Consensus       128 ~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-----------  193 (305)
T d1xkua_         128 VVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAASLKG-----------  193 (305)
T ss_dssp             EEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CTTCSEEECTTSCCCEECTGGGTT-----------
T ss_pred             ccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CCccCEEECCCCcCCCCChhHhhc-----------
Confidence            88887775431 122223336778888888888776 344332  467888888888877666655544           


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  437 (596)
                                                       ++.+++|++++|.+++..+..+.++++|++|+|++|+++ .+|+++.
T Consensus       194 ---------------------------------~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~  239 (305)
T d1xkua_         194 ---------------------------------LNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA  239 (305)
T ss_dssp             ---------------------------------CTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred             ---------------------------------cccccccccccccccccccccccccccceeeeccccccc-ccccccc
Confidence                                             334778888888888777888888899999999999888 5677888


Q ss_pred             CCCCCCEEECCCCcCcccCCccc------cCCCCCCEEecccccCc
Q 044353          438 VMRSIESLDFSANQLSGQIPQSM------SNLSFLNYLNLSNNNLN  477 (596)
Q Consensus       438 ~l~~L~~L~Ls~N~l~~~~~~~~------~~l~~L~~L~ls~N~l~  477 (596)
                      .+++|++|+|++|+|+.+....|      ..+++|+.|++++|++.
T Consensus       240 ~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         240 DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            88999999999998886544443      34677888999998885

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=1.7e-23  Score=204.12  Aligned_cols=269  Identities=21%  Similarity=0.257  Sum_probs=189.8

Q ss_pred             CCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEc
Q 044353           22 TLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLEL  101 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  101 (596)
                      ..+++|=++++++ .+|..+.  +++++|+|++|+|+ .++...|.++++|++|++++|.+....+.+|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKIT-EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCC-CcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            4566777777777 4455543  56888888888877 666657778888888888888777766777777888888888


Q ss_pred             cCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEE
Q 044353          102 RSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFD  181 (596)
Q Consensus       102 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~  181 (596)
                      ++|+++... ..  ....+..|++.+|.+.+ ++...+.....+..++...+......                      
T Consensus        87 ~~n~l~~l~-~~--~~~~l~~L~~~~n~l~~-l~~~~~~~~~~~~~l~~~~n~~~~~~----------------------  140 (305)
T d1xkua_          87 SKNQLKELP-EK--MPKTLQELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSG----------------------  140 (305)
T ss_dssp             CSSCCSBCC-SS--CCTTCCEEECCSSCCCB-BCHHHHTTCTTCCEEECCSSCCCGGG----------------------
T ss_pred             cCCccCcCc-cc--hhhhhhhhhccccchhh-hhhhhhhccccccccccccccccccC----------------------
Confidence            888776433 22  23567778888887763 55554555556666666665431100                      


Q ss_pred             cccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCC
Q 044353          182 LSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNN  261 (596)
Q Consensus       182 ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n  261 (596)
                              .    ....+..+++|+.+++++|.+.. ++..  .+++|+.|++++|..+...+..|.+++.++.|++++|
T Consensus       141 --------~----~~~~~~~l~~L~~l~l~~n~l~~-l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n  205 (305)
T d1xkua_         141 --------I----ENGAFQGMKKLSYIRIADTNITT-IPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN  205 (305)
T ss_dssp             --------B----CTTGGGGCTTCCEEECCSSCCCS-CCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS
T ss_pred             --------C----CccccccccccCccccccCCccc-cCcc--cCCccCEEECCCCcCCCCChhHhhccccccccccccc
Confidence                    0    01112235678888888887764 3332  2567888888888888777888888888888888888


Q ss_pred             cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcc------cCCCCCCcEEeCCCCc
Q 044353          262 RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQ------LCRLGSLQILDVAYNS  335 (596)
Q Consensus       262 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------~~~l~~L~~L~l~~n~  335 (596)
                      .+.+..+..+.++++|++|+|++|+++ .+|.++. .+++|++|++++|+++......      ....++|+.|++++|+
T Consensus       206 ~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~-~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA-DHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT-TCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             cccccccccccccccceeeeccccccc-ccccccc-cccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCc
Confidence            888887888888888888888888887 7777665 6888888888888887543333      3456789999999998


Q ss_pred             Cc
Q 044353          336 LS  337 (596)
Q Consensus       336 l~  337 (596)
                      ++
T Consensus       284 ~~  285 (305)
T d1xkua_         284 VQ  285 (305)
T ss_dssp             SC
T ss_pred             Cc
Confidence            75

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-23  Score=202.19  Aligned_cols=256  Identities=19%  Similarity=0.210  Sum_probs=189.1

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEcc-
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELR-  102 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~-  102 (596)
                      ..++.++++++ .+|..+.  +.+++|+|++|+|+ .++...|.++++|++|++++|.+.......+..+..++.+... 
T Consensus        14 ~~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCS-SCCTTCC--TTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCC-CCCHHHhhcccccccccccccccccccccccccccccccccccc
Confidence            34566677776 4465443  56788888888887 7776678888888888888888888888888888888888765 


Q ss_pred             CCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEc
Q 044353          103 SCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDL  182 (596)
Q Consensus       103 ~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~l  182 (596)
                      .+.+....+..++++++|++|++++|.+.. ++...+....+|+.+++++|++++..+..                    
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~l~l~~N~l~~i~~~~--------------------  148 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDT--------------------  148 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTT--------------------
T ss_pred             ccccccccchhhcccccCCEEecCCccccc-ccccccchhcccchhhhccccccccChhH--------------------
Confidence            455666667788888889999988888763 44444455677888888888775332222                    


Q ss_pred             ccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCc
Q 044353          183 SNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNR  262 (596)
Q Consensus       183 s~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~  262 (596)
                                      ++.+++|+.|++++|.+.+..+.+|.++++|+.+++++|.+++..|..|.++++|++|++++|.
T Consensus       149 ----------------f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~  212 (284)
T d1ozna_         149 ----------------FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (284)
T ss_dssp             ----------------TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             ----------------hccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccc
Confidence                            2235688899999999888888888899999999999999988888899999999999999999


Q ss_pred             ccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCC
Q 044353          263 LSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCR  322 (596)
Q Consensus       263 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  322 (596)
                      +.+..+..|..+++|+.|++++|++....+....  ...++.+....+.+....|..+.+
T Consensus       213 i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l--~~~l~~~~~~~~~~~C~~p~~l~g  270 (284)
T d1ozna_         213 LSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRLAG  270 (284)
T ss_dssp             CSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHH--HHHHHHCCSEECCCBEEESGGGTT
T ss_pred             cccccccccccccccCEEEecCCCCCCCccchHH--HHHHHhCcCCCCceEeCCchHHcC
Confidence            9988888888999999999999988744332111  223444444445555455555543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.3e-23  Score=198.49  Aligned_cols=204  Identities=21%  Similarity=0.270  Sum_probs=146.6

Q ss_pred             CCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEE
Q 044353          227 PRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILN  306 (596)
Q Consensus       227 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~  306 (596)
                      ..+.+++.+++.++ .+|..+.  +++++|+|++|.++++.+..|.++++|++|+|++|+++ .++..  ..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~~--~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEEE
T ss_pred             CCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccccc--cccccccccc
Confidence            34445555555555 3454432  35666666666666555566666666666666666665 44432  2466677777


Q ss_pred             ccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceee
Q 044353          307 LRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVE  386 (596)
Q Consensus       307 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (596)
                      +++|+++ ..+..+..+++|+.|++++|.+.+..+..+..                                        
T Consensus        84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~----------------------------------------  122 (266)
T d1p9ag_          84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRG----------------------------------------  122 (266)
T ss_dssp             CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT----------------------------------------
T ss_pred             ccccccc-ccccccccccccccccccccccceeecccccc----------------------------------------
Confidence            7777666 34556677777777777777766433333322                                        


Q ss_pred             cccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCC
Q 044353          387 YNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFL  466 (596)
Q Consensus       387 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L  466 (596)
                          +.+++.|++++|.+++..+..+..++.++.|++++|++++..++.|..+++|++|+|++|+|+ .+|+.+..+++|
T Consensus       123 ----l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L  197 (266)
T d1p9ag_         123 ----LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLL  197 (266)
T ss_dssp             ----CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCC
T ss_pred             ----ccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc-ccChhHCCCCCC
Confidence                344777888888887677777888999999999999999888888999999999999999999 677778889999


Q ss_pred             CEEecccccCccCCCC
Q 044353          467 NYLNLSNNNLNGEIPS  482 (596)
Q Consensus       467 ~~L~ls~N~l~~~~~~  482 (596)
                      +.|+|++|++.|.|..
T Consensus       198 ~~L~L~~Np~~CdC~~  213 (266)
T d1p9ag_         198 PFAFLHGNPWLCNCEI  213 (266)
T ss_dssp             SEEECCSCCBCCSGGG
T ss_pred             CEEEecCCCCCCCcch
Confidence            9999999999998753

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=184.72  Aligned_cols=205  Identities=22%  Similarity=0.237  Sum_probs=172.2

Q ss_pred             cCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCc
Q 044353          248 GALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQ  327 (596)
Q Consensus       248 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  327 (596)
                      .....+.+++.+++.++. +|..+.  +++++|+|++|.++ .+|...+..+++|++|+|++|.++. ++ .+..+++|+
T Consensus         7 ~~~~~~~~v~C~~~~L~~-iP~~lp--~~l~~L~Ls~N~i~-~l~~~~f~~l~~L~~L~L~~N~l~~-l~-~~~~l~~L~   80 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLY-TFSLATLMPYTRLTQLNLDRAELTK-LQ-VDGTLPVLG   80 (266)
T ss_dssp             ECSTTCCEEECTTSCCSS-CCSCCC--TTCCEEECTTSCCS-EEEGGGGTTCTTCCEEECTTSCCCE-EE-CCSCCTTCC
T ss_pred             cccCCCeEEEccCCCCCe-eCcCcC--cCCCEEECcCCcCC-CcCHHHhhccccccccccccccccc-cc-ccccccccc
Confidence            345667788999999995 454442  57999999999998 6777666689999999999999984 43 457899999


Q ss_pred             EEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc
Q 044353          328 ILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE  407 (596)
Q Consensus       328 ~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~  407 (596)
                      +|++++|+++. .+..+..                                            +++|+.|++++|.+.+.
T Consensus        81 ~L~Ls~N~l~~-~~~~~~~--------------------------------------------l~~L~~L~l~~~~~~~~  115 (266)
T d1p9ag_          81 TLDLSHNQLQS-LPLLGQT--------------------------------------------LPALTVLDVSFNRLTSL  115 (266)
T ss_dssp             EEECCSSCCSS-CCCCTTT--------------------------------------------CTTCCEEECCSSCCCCC
T ss_pred             ccccccccccc-ccccccc--------------------------------------------cccccccccccccccee
Confidence            99999999883 3444433                                            45589999999999988


Q ss_pred             CCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccC
Q 044353          408 IPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQ  487 (596)
Q Consensus       408 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~  487 (596)
                      .+..+..+.++++|++++|.++...+..+..++.|+.+++++|++++..++.|..+++|++|+|++|+++...+......
T Consensus       116 ~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~  195 (266)
T d1p9ag_         116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH  195 (266)
T ss_dssp             CSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             eccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCC
Confidence            88889999999999999999998888888999999999999999998888899999999999999999994444457788


Q ss_pred             ccccccccCCC-CCCCC
Q 044353          488 SFGASSFAGND-LCGAP  503 (596)
Q Consensus       488 ~l~~~~~~~n~-lc~~~  503 (596)
                      .++.+.+.||| .|+|.
T Consensus       196 ~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         196 LLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             CCSEEECCSCCBCCSGG
T ss_pred             CCCEEEecCCCCCCCcc
Confidence            89999999999 78764

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.80  E-value=2.4e-17  Score=163.33  Aligned_cols=95  Identities=23%  Similarity=0.250  Sum_probs=57.8

Q ss_pred             CCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCC-CCccEE
Q 044353           21 KTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPP-FQLAFL   99 (596)
Q Consensus        21 ~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L   99 (596)
                      .++++|||+++.++ .+|+.   .++|++|+|++|+|+ .+|. .   ..+|++|++++|.++..     ..+ +.|++|
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~-~---~~~L~~L~l~~n~l~~l-----~~lp~~L~~L  103 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPE-L---PQSLKSLLVDNNNLKAL-----SDLPPLLEYL  103 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCC-C---CTTCCEEECCSSCCSCC-----CSCCTTCCEE
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-cccc-c---hhhhhhhhhhhcccchh-----hhhccccccc
Confidence            36788888888887 45643   467888888888887 6664 2   35677778877766422     122 245666


Q ss_pred             EccCCCCCCCcchhhcCCCCCcEEEcccCcCc
Q 044353          100 ELRSCHLGPRFPLWLQSQKKLYYLDISSTRIS  131 (596)
Q Consensus       100 ~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  131 (596)
                      ++++|.+... | .++.+++|+.|+++++.+.
T Consensus       104 ~L~~n~l~~l-p-~~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_         104 GVSNNQLEKL-P-ELQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             ECCSSCCSSC-C-CCTTCTTCCEEECCSSCCS
T ss_pred             cccccccccc-c-chhhhccceeecccccccc
Confidence            6666655422 2 2344555555555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=2.6e-17  Score=163.18  Aligned_cols=133  Identities=16%  Similarity=0.136  Sum_probs=94.9

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|||++|+++ .+|+.   .++|++|++++|+|+ .+|+.   ..+|+.|++++|+++ .++.  +  .+.|++|++++|
T Consensus        42 ~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~--l--p~~L~~L~L~~n  108 (353)
T d1jl5a_          42 ELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD--L--PPLLEYLGVSNN  108 (353)
T ss_dssp             EEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS--C--CTTCCEEECCSS
T ss_pred             EEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh--h--cccccccccccc
Confidence            4899999998 46754   578999999999999 55755   468999999999987 5543  1  246999999999


Q ss_pred             eeeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccCcCcccCChhHHhcCCCCcEEEcccccc
Q 044353           81 SLVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQYDYLNVSGNQI  155 (596)
Q Consensus        81 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~L~~L~l~~n~l  155 (596)
                      .+... + .+..+++|++|+++++.+.....    ....+..+.+..+.....  .. ...++.++.+++.+|..
T Consensus       109 ~l~~l-p-~~~~l~~L~~L~l~~~~~~~~~~----~~~~l~~l~~~~~~~~~~--~~-l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         109 QLEKL-P-ELQNSSFLKIIDVDNNSLKKLPD----LPPSLEFIAAGNNQLEEL--PE-LQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CCSSC-C-CCTTCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSSC--CC-CTTCTTCCEEECCSSCC
T ss_pred             ccccc-c-chhhhccceeecccccccccccc----ccccccchhhcccccccc--cc-ccccccceecccccccc
Confidence            98754 2 46789999999999998763322    235666777666554321  11 12345666666666654

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.3e-21  Score=201.96  Aligned_cols=384  Identities=17%  Similarity=0.112  Sum_probs=219.0

Q ss_pred             CCCEEECcCCcccccC-CccCcCCCCCCEEECcCCcCcc----ccChhhhhcCCCCcEEEccCCeeeeEe----CCCCC-
Q 044353           22 TLRALDLSNNTVNGPI-PLSLGQIANLEYLDLSNNKLNG----TVSEIHFLNLTQLLVFRAHGNSLVFKI----NPNWV-   91 (596)
Q Consensus        22 ~L~~L~ls~n~i~~~~-~~~~~~l~~L~~L~Ls~n~i~~----~~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~-   91 (596)
                      +|+.||+++|++++.. .+-+..++++++|+|++|.++.    .+.. .+..+++|++|+|++|.++...    ...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~-~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS-ALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHH-HHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHH-HHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            5788999999998642 3345668889999999998862    1222 5678889999999998875321    12222 


Q ss_pred             CCCCccEEEccCCCCCCC----cchhhcCCCCCcEEEcccCcCcccCChhHHhcCCC----CcEEEcccccccccCCCCC
Q 044353           92 PPFQLAFLELRSCHLGPR----FPLWLQSQKKLYYLDISSTRISAKIPRGFWNSIFQ----YDYLNVSGNQIYGGVPKFD  163 (596)
Q Consensus        92 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~~l~~----L~~L~l~~n~l~~~~~~~~  163 (596)
                      ...+|++|++++|.++..    ++..+..+++|++|++++|.+++.....+...+..    ..........         
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~---------  152 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS---------  152 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC---------
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccc---------
Confidence            335788999998888653    34456778888888888888865433333322111    1122211111         


Q ss_pred             CCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCC----ccc-CCCCCCcEEEccccc
Q 044353          164 SPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIP----DCW-MNWPRLRMLNLGNNN  238 (596)
Q Consensus       164 ~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~~-~~l~~L~~L~l~~n~  238 (596)
                                             +...........+.....++.++++++.......    ..+ ........+++..+.
T Consensus       153 -----------------------~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~  209 (460)
T d1z7xw1         153 -----------------------LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCG  209 (460)
T ss_dssp             -----------------------CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC
T ss_pred             -----------------------cchhhhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                   1111111111122224556666666665432100    001 112244556666655


Q ss_pred             cccc----CCccCcCCCCCcEEEccCCccccc-----CChhhcCCCCCCEEEccCCcccccCchhh---hhhcccccEEE
Q 044353          239 FTGS----LPMSIGALNSLMSLNLRNNRLSGI-----IPTSFRNLSILKALDMGENELVGNIPTWI---GETFSRLMILN  306 (596)
Q Consensus       239 l~~~----~~~~~~~l~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~~l~~L~~L~  306 (596)
                      +...    ....+...+.++.+++++|.+...     ....+.....++.+++++|.+........   ....+.++.++
T Consensus       210 ~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~  289 (460)
T d1z7xw1         210 VTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELS  289 (460)
T ss_dssp             CBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEE
T ss_pred             ccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            4311    112233456677777777765422     22333456677777777776642221111   11356677777


Q ss_pred             ccCCcCcCcCCc----c-cCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEec
Q 044353          307 LRSNKFHGDFPI----Q-LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTK  381 (596)
Q Consensus       307 L~~n~l~~~~~~----~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (596)
                      +++|.++.....    . ......|+.+++++|.++......+..+                                  
T Consensus       290 l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~----------------------------------  335 (460)
T d1z7xw1         290 LAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV----------------------------------  335 (460)
T ss_dssp             CTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH----------------------------------
T ss_pred             cccccccccccchhhccccccccccccccccccchhhhhhhhcccc----------------------------------
Confidence            777776532111    1 1234578888888887764332222211                                  


Q ss_pred             cceeecccccccccEEEccCCccccc----CCcccc-CcccCCeeeccCccCccc----CCccccCCCCCCEEECCCCcC
Q 044353          382 GFLVEYNSILNLVRSIDISKNNFSGE----IPVEVT-NLQGLQSLNLSHNLFTGR----IPDNIGVMRSIESLDFSANQL  452 (596)
Q Consensus       382 ~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~-~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l  452 (596)
                            ....++|++|+|++|.+++.    +++.+. ..+.|++|+|++|++++.    +.+.+..+++|++|+|++|++
T Consensus       336 ------~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         336 ------LAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             ------HHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSC
T ss_pred             ------cccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcC
Confidence                  11244588888888887643    223332 456788888888888643    334456678888888888888


Q ss_pred             cccCCcc----cc-CCCCCCEEecccccCcc
Q 044353          453 SGQIPQS----MS-NLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       453 ~~~~~~~----~~-~l~~L~~L~ls~N~l~~  478 (596)
                      +......    +. +...|+.|++++|.+..
T Consensus       410 ~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~  440 (460)
T d1z7xw1         410 GDAGILQLVESVRQPGCLLEQLVLYDIYWSE  440 (460)
T ss_dssp             CHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred             CHHHHHHHHHHHHhCCCccCEEECCCCCCCH
Confidence            7533322    22 33468888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-21  Score=201.41  Aligned_cols=397  Identities=19%  Similarity=0.154  Sum_probs=239.6

Q ss_pred             CeeecCCCcccc-CCccccCCCCCCEEECcCCccccc----CCccCcCCCCCCEEECcCCcCccc----cChhhhh-cCC
Q 044353            1 SLFLRRSQFYGH-LTNQLGRFKTLRALDLSNNTVNGP----IPLSLGQIANLEYLDLSNNKLNGT----VSEIHFL-NLT   70 (596)
Q Consensus         1 ~l~L~~n~l~~~-~~~~l~~l~~L~~L~ls~n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~----~~~~~~~-~l~   70 (596)
                      +||+++|++++. +.+.+..+++++.|+|++|.+++.    ++.++..+++|++|||++|+|+..    +.. .+. ...
T Consensus         6 ~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~-~l~~~~~   84 (460)
T d1z7xw1           6 SLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ-GLQTPSC   84 (460)
T ss_dssp             EEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH-TTCSTTC
T ss_pred             EEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHH-HHhcCCC
Confidence            489999999874 355567899999999999998842    455678899999999999998621    111 122 235


Q ss_pred             CCcEEEccCCeeeeE----eCCCCCCCCCccEEEccCCCCCCCcchhh----c-CCCCCcEEEcccCcCcccCChhH---
Q 044353           71 QLLVFRAHGNSLVFK----INPNWVPPFQLAFLELRSCHLGPRFPLWL----Q-SQKKLYYLDISSTRISAKIPRGF---  138 (596)
Q Consensus        71 ~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~i~~~~~~~~---  138 (596)
                      +|++|++++|.++..    .+..+..+++|++|++++|.+.......+    . ..............+.......+   
T Consensus        85 ~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (460)
T d1z7xw1          85 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV  164 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred             CCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccc
Confidence            899999999998643    23457788999999999999864332222    1 22334455554444332211111   


Q ss_pred             HhcCCCCcEEEcccccccccCCCCCCCCCCccccCCCCCceEEcccCccccccccccccCC-CCCCCccEEeCcCCcCCC
Q 044353          139 WNSIFQYDYLNVSGNQIYGGVPKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGE-NFSKNIEFLKLSKNHFSE  217 (596)
Q Consensus       139 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~  217 (596)
                      ......++.++++.+........                                .....+ ........+++..+.+..
T Consensus       165 l~~~~~~~~~~ls~~~~~~~~~~--------------------------------~~~~~l~~~~~~~~~l~~~~~~~~~  212 (460)
T d1z7xw1         165 LRAKPDFKELTVSNNDINEAGVR--------------------------------VLCQGLKDSPCQLEALKLESCGVTS  212 (460)
T ss_dssp             HHHCTTCCEEECCSSBCHHHHHH--------------------------------HHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             ccccccccccccccccccccccc--------------------------------ccccccccccccccccccccccccc
Confidence            22345677777776654321100                                000000 001234456666554432


Q ss_pred             CC----CcccCCCCCCcEEEcccccccc-----cCCccCcCCCCCcEEEccCCcccccC----ChhhcCCCCCCEEEccC
Q 044353          218 DI----PDCWMNWPRLRMLNLGNNNFTG-----SLPMSIGALNSLMSLNLRNNRLSGII----PTSFRNLSILKALDMGE  284 (596)
Q Consensus       218 ~~----~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~  284 (596)
                      ..    ...+...+.++.+++++|.+..     ...........++.+++++|.+....    ...+...+.++.+++++
T Consensus       213 ~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~  292 (460)
T d1z7xw1         213 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG  292 (460)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             hhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            11    1122345667777777776532     22233344567888888887776332    23345677788888888


Q ss_pred             CcccccCchhhh----hhcccccEEEccCCcCcCcCCc----ccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCC
Q 044353          285 NELVGNIPTWIG----ETFSRLMILNLRSNKFHGDFPI----QLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSS  356 (596)
Q Consensus       285 n~l~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~  356 (596)
                      |.+.+.....+.    .....|+.+++++|.++.....    .+...++|++|++++|++++.....+..  .       
T Consensus       293 n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~--~-------  363 (460)
T d1z7xw1         293 NELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ--G-------  363 (460)
T ss_dssp             CCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH--H-------
T ss_pred             ccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh--h-------
Confidence            877533322222    1234688888888877643222    3345568888999888876422111110  0       


Q ss_pred             CCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCccccc----CCccccCcccCCeeeccCccCcccC
Q 044353          357 DPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRI  432 (596)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~  432 (596)
                                                    .....+.|++|+|++|.++..    +++.+..+++|++|+|++|++++..
T Consensus       364 ------------------------------l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g  413 (460)
T d1z7xw1         364 ------------------------------LGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  413 (460)
T ss_dssp             ------------------------------HTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             ------------------------------hhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHH
Confidence                                          001134588899999988643    4455667789999999999987543


Q ss_pred             Cccc----c-CCCCCCEEECCCCcCcccCCccc----cCCCCCCEE
Q 044353          433 PDNI----G-VMRSIESLDFSANQLSGQIPQSM----SNLSFLNYL  469 (596)
Q Consensus       433 ~~~~----~-~l~~L~~L~Ls~N~l~~~~~~~~----~~l~~L~~L  469 (596)
                      ...+    . +...|+.|++.+|.+.......+    ...|+|+.+
T Consensus       414 ~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~l~~~~~~l~~~  459 (460)
T d1z7xw1         414 ILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI  459 (460)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred             HHHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHHHHHhCCCCEEe
Confidence            3333    2 33479999999999885544433    344666554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=1.2e-17  Score=154.38  Aligned_cols=205  Identities=21%  Similarity=0.343  Sum_probs=145.3

Q ss_pred             cEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCC
Q 044353          206 EFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGEN  285 (596)
Q Consensus       206 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  285 (596)
                      ..++++.+.+++..  .++.+.+|+.|++.+|.++. ++ .+..+++|++|++++|.+.+..+  +..+++++.+++++|
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n   95 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGN   95 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSC
T ss_pred             HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeecccc--ccccccccccccccc
Confidence            34556666665533  34566778888888887774 33 47778888888888888775433  777888888888888


Q ss_pred             cccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCcccc
Q 044353          286 ELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYA  365 (596)
Q Consensus       286 ~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~  365 (596)
                      .++ .++. +. .+++|+.++++++...+.  ..+...+.++.+.++++.+....  .+.                    
T Consensus        96 ~~~-~i~~-l~-~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~--------------------  148 (227)
T d1h6ua2          96 PLK-NVSA-IA-GLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLA--------------------  148 (227)
T ss_dssp             CCS-CCGG-GT-TCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGG--------------------
T ss_pred             ccc-cccc-cc-cccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhc--------------------
Confidence            776 4543 33 577888888887766532  33556677888888777765221  121                    


Q ss_pred             CCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEE
Q 044353          366 SSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESL  445 (596)
Q Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  445 (596)
                                              .+++|+.|++++|.+.+.  ..+.++++|++|+|++|++++ ++. ++.+++|++|
T Consensus       149 ------------------------~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~~-l~~l~~L~~L  200 (227)
T d1h6ua2         149 ------------------------GLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-ISP-LASLPNLIEV  200 (227)
T ss_dssp             ------------------------GCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEE
T ss_pred             ------------------------cccccccccccccccccc--hhhcccccceecccCCCccCC-Chh-hcCCCCCCEE
Confidence                                    244578888888887632  347889999999999999884 443 7889999999


Q ss_pred             ECCCCcCcccCCccccCCCCCCEEeccc
Q 044353          446 DFSANQLSGQIPQSMSNLSFLNYLNLSN  473 (596)
Q Consensus       446 ~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  473 (596)
                      +|++|+++.+.  .+.++++|+.|++++
T Consensus       201 ~Ls~N~lt~i~--~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         201 HLKNNQISDVS--PLANTSNLFIVTLTN  226 (227)
T ss_dssp             ECTTSCCCBCG--GGTTCTTCCEEEEEE
T ss_pred             ECcCCcCCCCc--ccccCCCCCEEEeeC
Confidence            99999998553  388899999999874

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=7.6e-18  Score=157.65  Aligned_cols=104  Identities=22%  Similarity=0.158  Sum_probs=63.5

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeE-eCCCCCCCCCccEEEcc
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFK-INPNWVPPFQLAFLELR  102 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~  102 (596)
                      +.++.++..++ .+|..+.  +++++|+|++|+|+ .++...|.++++|++|++++|.+... .+.+|..++.++++.+.
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCC-ccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            45666666666 3444432  45677777777766 56655667777777777777665443 23456666666666654


Q ss_pred             C-CCCCCCcchhhcCCCCCcEEEcccCcCc
Q 044353          103 S-CHLGPRFPLWLQSQKKLYYLDISSTRIS  131 (596)
Q Consensus       103 ~-n~l~~~~~~~l~~l~~L~~L~l~~n~i~  131 (596)
                      . +.+....+..+..+++|+.+++++|.+.
T Consensus        87 ~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~  116 (242)
T d1xwdc1          87 KANNLLYINPEAFQNLPNLQYLLISNTGIK  116 (242)
T ss_dssp             CCTTCCEECTTSEECCTTCCEEEEESCCCC
T ss_pred             ccccccccccccccccccccccccchhhhc
Confidence            3 4455555556666667777777666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=154.35  Aligned_cols=79  Identities=15%  Similarity=0.006  Sum_probs=51.8

Q ss_pred             ccEEEccCCcccccCCccccCcccCCe-eeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          394 VRSIDISKNNFSGEIPVEVTNLQGLQS-LNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~-L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      ++.|++++|++++..+..|. ..++++ +++++|+++...++.|.++++|++|++++|+++...+..|.++++|+.+++.
T Consensus       155 l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~  233 (242)
T d1xwdc1         155 SVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  233 (242)
T ss_dssp             CEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEE
T ss_pred             ceeeeccccccccccccccc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCC
Confidence            56677777777644444443 344433 4567777775555667888888888888888886656667777777666654


Q ss_pred             c
Q 044353          473 N  473 (596)
Q Consensus       473 ~  473 (596)
                      +
T Consensus       234 ~  234 (242)
T d1xwdc1         234 N  234 (242)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.71  E-value=2e-17  Score=148.45  Aligned_cols=111  Identities=23%  Similarity=0.344  Sum_probs=68.3

Q ss_pred             cccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecc
Q 044353          393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLS  472 (596)
Q Consensus       393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls  472 (596)
                      +|+.|+|++|.+.+..+..|..+++|++|+|++|++++..+++|.++++|++|+|++|+|+.+.+++|..+++|++|+++
T Consensus        55 ~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~  134 (192)
T d1w8aa_          55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA  134 (192)
T ss_dssp             TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECT
T ss_pred             eEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccc
Confidence            35566666666665666666666777777777777766666666667777777777777776666666677777777777


Q ss_pred             cccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          473 NNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       473 ~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      +|++.|.++..+....++...+.++. .|..|
T Consensus       135 ~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p  166 (192)
T d1w8aa_         135 SNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             TCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred             ccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence            77776665443333333333444443 44443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.3e-16  Score=145.62  Aligned_cols=187  Identities=20%  Similarity=0.291  Sum_probs=149.9

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +.+|+.|++.+|+++.. + .+..+++|++|++++|.+++..+  +..+++++.+++++|.++.+  ..+.++++|+.++
T Consensus        40 l~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~i--~~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc-h-hHhcCCCCcEeecCCceeecccc--cccccccccccccccccccc--ccccccccccccc
Confidence            56899999999999864 3 58899999999999999985443  88999999999999998854  3578999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCC
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSG  361 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~  361 (596)
                      ++++... .++. +. ..+.+..+.++++.+...  ..+...++|+.|++++|.+.+..  .+++               
T Consensus       114 l~~~~~~-~~~~-~~-~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~l~~---------------  171 (227)
T d1h6ua2         114 LTSTQIT-DVTP-LA-GLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLT--PLAN---------------  171 (227)
T ss_dssp             CTTSCCC-CCGG-GT-TCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCG--GGTT---------------
T ss_pred             ccccccc-ccch-hc-cccchhhhhchhhhhchh--hhhccccccccccccccccccch--hhcc---------------
Confidence            9999876 3333 22 478899999999887643  34677889999999999876321  1222               


Q ss_pred             ccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCC
Q 044353          362 IFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRS  441 (596)
Q Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  441 (596)
                                                   +++|++|++++|.+++ ++ .+.++++|++|+|++|++++ ++. ++++++
T Consensus       172 -----------------------------l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~-i~~-l~~l~~  218 (227)
T d1h6ua2         172 -----------------------------LSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD-VSP-LANTSN  218 (227)
T ss_dssp             -----------------------------CTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB-CGG-GTTCTT
T ss_pred             -----------------------------cccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC-Ccc-cccCCC
Confidence                                         5568999999999974 33 48899999999999999985 443 889999


Q ss_pred             CCEEECCC
Q 044353          442 IESLDFSA  449 (596)
Q Consensus       442 L~~L~Ls~  449 (596)
                      |+.|++++
T Consensus       219 L~~L~lsn  226 (227)
T d1h6ua2         219 LFIVTLTN  226 (227)
T ss_dssp             CCEEEEEE
T ss_pred             CCEEEeeC
Confidence            99999974

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.69  E-value=3.1e-17  Score=147.14  Aligned_cols=173  Identities=19%  Similarity=0.263  Sum_probs=104.7

Q ss_pred             EEEccCCcccccCchhhhhhcccccEEEccCCcCcC-cCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCC
Q 044353          279 ALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG-DFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSD  357 (596)
Q Consensus       279 ~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~  357 (596)
                      +++.++++++ .+|..+.   +++++|+|++|.+++ ..+..|.++++|++|++++|.+....+..+..           
T Consensus        12 ~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-----------   76 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-----------   76 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             EEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-----------
Confidence            4555555555 5554432   355666666666653 23344556666666666666666444444433           


Q ss_pred             CCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCcccc
Q 044353          358 PNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIG  437 (596)
Q Consensus       358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~  437 (596)
                                                       +++|+.|+|++|++++..+.+|.++++|++|+|++|+|++..+++|.
T Consensus        77 ---------------------------------~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~  123 (192)
T d1w8aa_          77 ---------------------------------ASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE  123 (192)
T ss_dssp             ---------------------------------CTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSST
T ss_pred             ---------------------------------ccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhc
Confidence                                             23356666666666666667778888888888888888877777788


Q ss_pred             CCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCccCCCCCCccCccccccccCCC-CCCC
Q 044353          438 VMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNGEIPSSTQLQSFGASSFAGND-LCGA  502 (596)
Q Consensus       438 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~  502 (596)
                      .+++|++|+|++|.+....... .-...++.+.+..+.+.|..|.  .+..+...++..|. .|..
T Consensus       124 ~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~~~~c~~p~--~l~~~~l~~L~~n~l~C~~  186 (192)
T d1w8aa_         124 HLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAPS--KVRDVQIKDLPHSEFKCSS  186 (192)
T ss_dssp             TCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSST--TTTTSBGGGSCTTTCCCCC
T ss_pred             CCcccccccccccccccccchH-HHhhhhhhhcccCCCeEeCCCh--hhcCCEeeecCHhhCcCCC
Confidence            8888888888888776432211 1112345566677777776654  34444555566666 4543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=3.1e-16  Score=142.68  Aligned_cols=74  Identities=22%  Similarity=0.377  Sum_probs=48.2

Q ss_pred             ccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEeccc
Q 044353          394 VRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSN  473 (596)
Q Consensus       394 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~  473 (596)
                      ++.+++++|.+++  +..+..+++|+.+++++|++++ +++ ++++++|++|++++|+++. ++ .+.++++|+.|++++
T Consensus       136 l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~-i~~-l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         136 LESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISD-IVP-LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             ccccccccccccc--cccccccccccccccccccccc-ccc-ccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            4555555555542  2345566777777777777764 332 6777788888888887774 33 477777888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8.2e-16  Score=138.57  Aligned_cols=118  Identities=23%  Similarity=0.370  Sum_probs=55.8

Q ss_pred             EeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCcc
Q 044353          208 LKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENEL  287 (596)
Q Consensus       208 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  287 (596)
                      ..++.+.+++..+  ...++++++|++++|.++. + +.+..+++|++|++++|.+++..+  +.++++|+.|++++|.+
T Consensus        23 ~~l~~~~~~~~~~--~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~   96 (199)
T d2omxa2          23 TVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQI   96 (199)
T ss_dssp             HHTTCSSTTSEEC--HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred             HHhCCCCCCCccC--HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccc
Confidence            3444444443322  2344556666666666552 2 234455566666666665554322  55555555555555555


Q ss_pred             cccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcC
Q 044353          288 VGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSL  336 (596)
Q Consensus       288 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  336 (596)
                      . .++. + ..++.|+.+++++|.....  ..+..+++|+.|++++|.+
T Consensus        97 ~-~~~~-l-~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l  140 (199)
T d2omxa2          97 A-DITP-L-ANLTNLTGLTLFNNQITDI--DPLKNLTNLNRLELSSNTI  140 (199)
T ss_dssp             C-CCGG-G-TTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCC
T ss_pred             c-cccc-c-ccccccccccccccccccc--cccchhhhhHHhhhhhhhh
Confidence            4 3332 1 1344555555554444321  1233444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=4.5e-16  Score=141.56  Aligned_cols=180  Identities=21%  Similarity=0.333  Sum_probs=115.6

Q ss_pred             eCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEEccCCccc
Q 044353          209 KLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALDMGENELV  288 (596)
Q Consensus       209 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  288 (596)
                      .+..+.+++.++.  ..+.+|+.|++++|.++.. + .+..+++|++|++++|.+++..  .+..+++|+.|++++|+++
T Consensus        30 ~l~~~~~~~~~~~--~~L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~  103 (210)
T d1h6ta2          30 NLKKKSVTDAVTQ--NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVK  103 (210)
T ss_dssp             HTTCSCTTSEECH--HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred             HhCcCccCCccCH--HHhcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCcc--ccccCcccccccccccccc
Confidence            4444444443321  2345667777777766632 2 3566677777777777776543  3566777777777777775


Q ss_pred             ccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCC
Q 044353          289 GNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSG  368 (596)
Q Consensus       289 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~  368 (596)
                       .++. +. .+++|+.|++++|.+.. + ..+..++.++.+++++|.+++.  ..+.                       
T Consensus       104 -~l~~-l~-~l~~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~-----------------------  153 (210)
T d1h6ta2         104 -DLSS-LK-DLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLS-----------------------  153 (210)
T ss_dssp             -CGGG-GT-TCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGG-----------------------
T ss_pred             -cccc-cc-ccccccccccccccccc-c-cccccccccccccccccccccc--cccc-----------------------
Confidence             4443 22 56777777777776652 2 3466677777777777776521  1111                       


Q ss_pred             CCceeeeeEEEeccceeecccccccccEEEccCCcccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECC
Q 044353          369 DNEIVEDALLVTKGFLVEYNSILNLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFS  448 (596)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  448 (596)
                                           .+++|+.+++++|++++ ++ .+.++++|++|+|++|+++ .++ .+..+++|++|+|+
T Consensus       154 ---------------------~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         154 ---------------------RLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ---------------------GCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             ---------------------ccccccccccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence                                 24557788888888874 33 3778888999999999887 344 48888899999886


Q ss_pred             C
Q 044353          449 A  449 (596)
Q Consensus       449 ~  449 (596)
                      +
T Consensus       209 ~  209 (210)
T d1h6ta2         209 S  209 (210)
T ss_dssp             E
T ss_pred             C
Confidence            4

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=5.3e-15  Score=133.15  Aligned_cols=125  Identities=25%  Similarity=0.339  Sum_probs=101.7

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      ++++++|++++|.+...  ..+..+++|++|++++|++++..+  +.++++|++|++++|.+....  .+.++++|+.++
T Consensus        39 l~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc--cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccccc
Confidence            56899999999998753  347889999999999999985433  889999999999999988543  488999999999


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCcccCCCCCCcEEeCCCCcCc
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPIQLCRLGSLQILDVAYNSLS  337 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  337 (596)
                      ++++... .++ .+. .+++|+.+++++|.+.. + ..+..+++|+.|++.+|.++
T Consensus       113 l~~~~~~-~~~-~~~-~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         113 LFNNQIT-DID-PLK-NLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             CCSSCCC-CCG-GGT-TCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             ccccccc-ccc-ccc-hhhhhHHhhhhhhhhcc-c-cccccccccccccccccccc
Confidence            9999886 343 233 68999999999998873 3 35778888888888888776

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=4e-16  Score=148.96  Aligned_cols=255  Identities=17%  Similarity=0.133  Sum_probs=125.8

Q ss_pred             eeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCe
Q 044353            2 LFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNS   81 (596)
Q Consensus         2 l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~   81 (596)
                      |||+++.+.......+.. ..+..+.++...+.... .......+|++||++++.+++......+.++++|++|++++|.
T Consensus         5 lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~   82 (284)
T d2astb2           5 LDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR   82 (284)
T ss_dssp             EECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB
T ss_pred             EECCCCCCCchHHHHHHh-ccceEeeccccccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC
Confidence            566666554322222211 12345555554444221 2223344666666666655433222245555555555555554


Q ss_pred             eeeEeCCCCCCCCCccEEEccCCCCCCCcchhhcCCCCCcEEEcccC-cCcccCChhHHhcCCCCcEEEccccc-ccccC
Q 044353           82 LVFKINPNWVPPFQLAFLELRSCHLGPRFPLWLQSQKKLYYLDISST-RISAKIPRGFWNSIFQYDYLNVSGNQ-IYGGV  159 (596)
Q Consensus        82 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~  159 (596)
                      +                        ....+..++++++|++|+++++ .+++.....+...+++|++|+++++. +++..
T Consensus        83 l------------------------~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~  138 (284)
T d2astb2          83 L------------------------SDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH  138 (284)
T ss_dssp             C------------------------CHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred             C------------------------CcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcccccccccccccccc
Confidence            4                        3344445555555666666553 34433223334445566666665542 11000


Q ss_pred             CCCCCCCCCccccCCCCCceEEcccCccccccccccccCCCCCCCccEEeCcCCc--CCCC-CCcccCCCCCCcEEEccc
Q 044353          160 PKFDSPSVPLITTPSLLGSIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNH--FSED-IPDCWMNWPRLRMLNLGN  236 (596)
Q Consensus       160 ~~~~~~~~~~~~~~~~~~~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~  236 (596)
                                                     ....+.   ..+++|+.|+++++.  ++.. +...+..+++|++|++++
T Consensus       139 -------------------------------~~~~~~---~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~  184 (284)
T d2astb2         139 -------------------------------VQVAVA---HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD  184 (284)
T ss_dssp             -------------------------------HHHHHH---HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTT
T ss_pred             -------------------------------chhhhc---ccccccchhhhccccccccccccccccccccccccccccc
Confidence                                           000000   013456666666542  2211 111234566777777776


Q ss_pred             cc-ccccCCccCcCCCCCcEEEccCC-cccccCChhhcCCCCCCEEEccCCcccccCchhhhhhcccccEEEccCCcCcC
Q 044353          237 NN-FTGSLPMSIGALNSLMSLNLRNN-RLSGIIPTSFRNLSILKALDMGENELVGNIPTWIGETFSRLMILNLRSNKFHG  314 (596)
Q Consensus       237 n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~  314 (596)
                      |. +++.....+..+++|++|++++| .+++.....+..+++|+.|+++++ +.+..-..+.+.+++|+   +..+.++.
T Consensus       185 ~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~  260 (284)
T d2astb2         185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTT  260 (284)
T ss_dssp             CTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCC
T ss_pred             ccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCC
Confidence            53 55555566667777777777774 465555556677788888888776 33233233333455554   34455554


Q ss_pred             cCCccc
Q 044353          315 DFPIQL  320 (596)
Q Consensus       315 ~~~~~~  320 (596)
                      ..+..+
T Consensus       261 ~~~~~~  266 (284)
T d2astb2         261 IARPTI  266 (284)
T ss_dssp             TTCSSC
T ss_pred             CCCCcc
Confidence            433333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2e-15  Score=144.11  Aligned_cols=224  Identities=17%  Similarity=0.162  Sum_probs=133.0

Q ss_pred             ceEEcccCccccccccccccCCCCCCCccEEeCcCCcCCCCCCcccCCCCCCcEEEccccccccc-CCccCcCCCCCcEE
Q 044353          178 SIFDLSNNALSGSIFHLICQGENFSKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGS-LPMSIGALNSLMSL  256 (596)
Q Consensus       178 ~~l~ls~n~l~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L  256 (596)
                      +.+|++++.+.......+..     ..+..+.++...+...... .....+|++|+++++.++.. +...+.++++|++|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-----~~~~~lrl~~~~~~~~~~~-~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L   76 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-----QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL   76 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-----TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred             CEEECCCCCCCchHHHHHHh-----ccceEeeccccccccchhh-hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence            34566655554332222211     2344566665555432222 23445788888888877632 34456778888888


Q ss_pred             EccCCcccccCChhhcCCCCCCEEEccCC-cccccCchhhhhhcccccEEEccCCc-CcCc-CCccc-CCCCCCcEEeCC
Q 044353          257 NLRNNRLSGIIPTSFRNLSILKALDMGEN-ELVGNIPTWIGETFSRLMILNLRSNK-FHGD-FPIQL-CRLGSLQILDVA  332 (596)
Q Consensus       257 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~-~~l~~L~~L~l~  332 (596)
                      +++++.+.+..+..+..+++|++|+++++ .+++..-..+...+++|++|++++|. ++.. +...+ ...++|+.|+++
T Consensus        77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~  156 (284)
T d2astb2          77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS  156 (284)
T ss_dssp             ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred             cccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhc
Confidence            88888887777777888888888888885 34422223344467888888888763 3321 11122 224677888877


Q ss_pred             CCc--CcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEccCC-cccccCC
Q 044353          333 YNS--LSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDISKN-NFSGEIP  409 (596)
Q Consensus       333 ~n~--l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~  409 (596)
                      ++.  ++..   .+                                        ......+++|++|++++| .+++...
T Consensus       157 ~~~~~i~~~---~l----------------------------------------~~l~~~~~~L~~L~L~~~~~itd~~~  193 (284)
T d2astb2         157 GYRKNLQKS---DL----------------------------------------STLVRRCPNLVHLDLSDSVMLKNDCF  193 (284)
T ss_dssp             SCGGGSCHH---HH----------------------------------------HHHHHHCTTCSEEECTTCTTCCGGGG
T ss_pred             ccccccccc---cc----------------------------------------cccccccccccccccccccCCCchhh
Confidence            652  2210   01                                        011122555777777765 3555556


Q ss_pred             ccccCcccCCeeeccCc-cCcccCCccccCCCCCCEEECCCC
Q 044353          410 VEVTNLQGLQSLNLSHN-LFTGRIPDNIGVMRSIESLDFSAN  450 (596)
Q Consensus       410 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N  450 (596)
                      ..+..+++|++|+|++| .+++.....++.+++|+.|+++++
T Consensus       194 ~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         194 QEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            66667777777777774 465555556667777777777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-14  Score=124.60  Aligned_cols=131  Identities=19%  Similarity=0.067  Sum_probs=109.4

Q ss_pred             ccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCC
Q 044353           15 NQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPF   94 (596)
Q Consensus        15 ~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   94 (596)
                      ..+.+..++++|+|++|.|+.+ +..+..+++|++|+|++|+|+ .++  .|..+++|++|++++|.++...+..+..++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~-~l~--~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~   87 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIR-KLD--GFPLLRRLKTLLVNNNRICRIGEGLDQALP   87 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCC-EEC--CCCCCSSCCEEECCSSCCCEECSCHHHHCT
T ss_pred             HhccCcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCC-ccC--CcccCcchhhhhcccccccCCCcccccccc
Confidence            3467888999999999999954 666788999999999999998 775  588999999999999999877666677899


Q ss_pred             CccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCCh---hHHhcCCCCcEEEc
Q 044353           95 QLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPR---GFWNSIFQYDYLNV  150 (596)
Q Consensus        95 ~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~---~~~~~l~~L~~L~l  150 (596)
                      +|++|++++|++..... ..++.+++|++|++++|.++. .+.   .....+++|+.||.
T Consensus        88 ~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          88 DLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             TCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETT
T ss_pred             ccccceeccccccccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeCC
Confidence            99999999999975433 568899999999999999874 442   34566899998874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.51  E-value=1e-15  Score=150.97  Aligned_cols=246  Identities=13%  Similarity=0.155  Sum_probs=162.5

Q ss_pred             ccccCCCCCCCccEEeCcCCcCCCC----CCcccCCCCCCcEEEcccccccc----------cCCccCcCCCCCcEEEcc
Q 044353          194 LICQGENFSKNIEFLKLSKNHFSED----IPDCWMNWPRLRMLNLGNNNFTG----------SLPMSIGALNSLMSLNLR  259 (596)
Q Consensus       194 ~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~----------~~~~~~~~l~~L~~L~L~  259 (596)
                      .+...+....++++|+|++|.+...    +...+...++|+.++++++....          .+...+..+++|+.|+|+
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~  101 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS  101 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence            3334444567888888888877532    22345667888888888765431          122334567889999999


Q ss_pred             CCcccccC----ChhhcCCCCCCEEEccCCcccccCchhh------------hhhcccccEEEccCCcCcCc----CCcc
Q 044353          260 NNRLSGII----PTSFRNLSILKALDMGENELVGNIPTWI------------GETFSRLMILNLRSNKFHGD----FPIQ  319 (596)
Q Consensus       260 ~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------~~~l~~L~~L~L~~n~l~~~----~~~~  319 (596)
                      +|.+....    ...+...++|+.|++++|.+.......+            ....+.|+.+.+++|.+...    +...
T Consensus       102 ~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         102 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccch
Confidence            99887543    3344567889999999887642211111            12356788888888877632    2234


Q ss_pred             cCCCCCCcEEeCCCCcCcccCCccccccccCcccCCCCCCCCccccCCCCCceeeeeEEEeccceeecccccccccEEEc
Q 044353          320 LCRLGSLQILDVAYNSLSGTIPRCINNFSAMATTDSSDPNSGIFYASSGDNEIVEDALLVTKGFLVEYNSILNLVRSIDI  399 (596)
Q Consensus       320 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~L  399 (596)
                      +...+.|++|++++|.+.......+                                       .......+++|+.|++
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~---------------------------------------l~~~l~~~~~L~~L~L  222 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHL---------------------------------------LLEGLAYCQELKVLDL  222 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHH---------------------------------------HHTTGGGCTTCCEEEC
T ss_pred             hhhhhhhcccccccccccccccccc---------------------------------------hhhhhcchhhhccccc
Confidence            5567789999999888763210000                                       0111223666899999


Q ss_pred             cCCccccc----CCccccCcccCCeeeccCccCcccCCccc----c--CCCCCCEEECCCCcCcccC----Ccccc-CCC
Q 044353          400 SKNNFSGE----IPVEVTNLQGLQSLNLSHNLFTGRIPDNI----G--VMRSIESLDFSANQLSGQI----PQSMS-NLS  464 (596)
Q Consensus       400 s~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~----~--~l~~L~~L~Ls~N~l~~~~----~~~~~-~l~  464 (596)
                      ++|.++..    +...+..+++|++|+|++|.+++.....+    .  ..+.|++|++++|.++...    ...+. +++
T Consensus       223 s~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~  302 (344)
T d2ca6a1         223 QDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMP  302 (344)
T ss_dssp             CSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCT
T ss_pred             ccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCC
Confidence            99998643    44567788999999999999875433333    2  2367999999999987532    23332 578


Q ss_pred             CCCEEecccccCcc
Q 044353          465 FLNYLNLSNNNLNG  478 (596)
Q Consensus       465 ~L~~L~ls~N~l~~  478 (596)
                      .|+.|++++|++..
T Consensus       303 ~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         303 DLLFLELNGNRFSE  316 (344)
T ss_dssp             TCCEEECTTSBSCT
T ss_pred             CCCEEECCCCcCCC
Confidence            89999999999864

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=6.9e-14  Score=114.59  Aligned_cols=119  Identities=22%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             CEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCCCCccEEEccC
Q 044353           24 RALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPPFQLAFLELRS  103 (596)
Q Consensus        24 ~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  103 (596)
                      |.|++++|+++.. + .+..+++|++|++++|+++ .+|. .|..+++|++|++++|.++..  +.+..+++|++|++++
T Consensus         1 R~L~Ls~n~l~~l-~-~l~~l~~L~~L~ls~N~l~-~lp~-~~~~l~~L~~L~l~~N~i~~l--~~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLTVL-C-HLEQLLLVTHLDLSHNRLR-ALPP-ALAALRCLEVLQASDNALENV--DGVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCSSC-C-CGGGGTTCCEEECCSSCCC-CCCG-GGGGCTTCCEEECCSSCCCCC--GGGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCCCC-c-ccccCCCCCEEECCCCccC-cchh-hhhhhhccccccccccccccc--CccccccccCeEECCC
Confidence            4556666666532 2 3555666666666666665 5554 455666666666666665532  2355666666666666


Q ss_pred             CCCCCCc-chhhcCCCCCcEEEcccCcCccc--CChhHHhcCCCCcEE
Q 044353          104 CHLGPRF-PLWLQSQKKLYYLDISSTRISAK--IPRGFWNSIFQYDYL  148 (596)
Q Consensus       104 n~l~~~~-~~~l~~l~~L~~L~l~~n~i~~~--~~~~~~~~l~~L~~L  148 (596)
                      |++.... ...+..+++|+.|++++|++++.  .+..+...+++|+.+
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            6665433 24567778888888888877532  234555666777665

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=4.6e-15  Score=146.13  Aligned_cols=112  Identities=17%  Similarity=0.229  Sum_probs=53.0

Q ss_pred             CCCCcEEEcccccccc-----cCCccCcCCCCCcEEEccCCccccc----CChhhcCCCCCCEEEccCCcccccCchhhh
Q 044353          226 WPRLRMLNLGNNNFTG-----SLPMSIGALNSLMSLNLRNNRLSGI----IPTSFRNLSILKALDMGENELVGNIPTWIG  296 (596)
Q Consensus       226 l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  296 (596)
                      ++.|++|++++|.++.     .+...+..+++|+.|++++|.+...    ....+..+++|++|++++|.+.+.....+.
T Consensus       185 ~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~  264 (344)
T d2ca6a1         185 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVV  264 (344)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHH
T ss_pred             hhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHH
Confidence            3445555555554431     1222344445555555555554422    223344555566666666655433222222


Q ss_pred             hh-----cccccEEEccCCcCcCc----CCcccC-CCCCCcEEeCCCCcCc
Q 044353          297 ET-----FSRLMILNLRSNKFHGD----FPIQLC-RLGSLQILDVAYNSLS  337 (596)
Q Consensus       297 ~~-----l~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~  337 (596)
                      ..     .+.|++|++++|.++..    +...+. ..++|+.|++++|.+.
T Consensus       265 ~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         265 DAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             HHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            11     23466666666655421    112221 3556777777777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.2e-14  Score=120.90  Aligned_cols=124  Identities=17%  Similarity=0.139  Sum_probs=88.9

Q ss_pred             CCCccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccCChhhcCCCCCCEEE
Q 044353          202 SKNIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGIIPTSFRNLSILKALD  281 (596)
Q Consensus       202 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  281 (596)
                      +.++++|++++|+++.+ +..+..+++|+.|++++|.++..  +.|..+++|++|++++|.++.+.+..+..+++|++|+
T Consensus        17 ~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccccce
Confidence            56788888888888754 55567778888888888888743  3477788888888888888877666677788888888


Q ss_pred             ccCCcccccCch-hhhhhcccccEEEccCCcCcCcCCc----ccCCCCCCcEEe
Q 044353          282 MGENELVGNIPT-WIGETFSRLMILNLRSNKFHGDFPI----QLCRLGSLQILD  330 (596)
Q Consensus       282 L~~n~l~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~  330 (596)
                      +++|++. .++. .....+++|+++++++|.++. .|.    .+..+|+|+.||
T Consensus        94 L~~N~i~-~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          94 LTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred             ecccccc-ccccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence            8888876 4443 223357778888888877763 332    456677777776

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.3e-13  Score=112.93  Aligned_cols=117  Identities=24%  Similarity=0.250  Sum_probs=97.5

Q ss_pred             CeeecCCCccccCCccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCC
Q 044353            1 SLFLRRSQFYGHLTNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGN   80 (596)
Q Consensus         1 ~l~L~~n~l~~~~~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n   80 (596)
                      +|||++|+++. ++ .+..+++|++|++++|.|+ .+|..+..+++|++|++++|+|+ .++  .+.++++|++|++++|
T Consensus         2 ~L~Ls~n~l~~-l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~-~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLTV-LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCSS-CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCG--GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCCC-Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccc-ccC--ccccccccCeEECCCC
Confidence            48999999984 34 5899999999999999998 56778999999999999999998 665  5899999999999999


Q ss_pred             eeeeEeC-CCCCCCCCccEEEccCCCCCC---CcchhhcCCCCCcEE
Q 044353           81 SLVFKIN-PNWVPPFQLAFLELRSCHLGP---RFPLWLQSQKKLYYL  123 (596)
Q Consensus        81 ~l~~~~~-~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~~L  123 (596)
                      .+..... ..+..+++|+.|++++|++..   ........+++|+.|
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            9985543 467889999999999999853   223344557777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.8e-12  Score=109.55  Aligned_cols=91  Identities=19%  Similarity=0.177  Sum_probs=75.0

Q ss_pred             cccccEEEccCC-cccccCCccccCcccCCeeeccCccCcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEE
Q 044353          391 LNLVRSIDISKN-NFSGEIPVEVTNLQGLQSLNLSHNLFTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYL  469 (596)
Q Consensus       391 ~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  469 (596)
                      +++|+.|++++| .++...+..|.++++|+.|+|++|+|+.+.+++|..+++|++|+|++|+++.+.++.|..+ +|+.|
T Consensus        30 l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L  108 (156)
T d2ifga3          30 AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQEL  108 (156)
T ss_dssp             CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEE
T ss_pred             ccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccc
Confidence            344677777655 4776667789999999999999999998888899999999999999999996666666654 69999


Q ss_pred             ecccccCccCCCC
Q 044353          470 NLSNNNLNGEIPS  482 (596)
Q Consensus       470 ~ls~N~l~~~~~~  482 (596)
                      +|++|++.|.|..
T Consensus       109 ~L~~Np~~C~C~~  121 (156)
T d2ifga3         109 VLSGNPLHCSCAL  121 (156)
T ss_dssp             ECCSSCCCCCGGG
T ss_pred             ccCCCcccCCchH
Confidence            9999999887743

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=4.7e-12  Score=108.09  Aligned_cols=111  Identities=15%  Similarity=0.149  Sum_probs=95.9

Q ss_pred             ccccEEEccCCcccccCCccccCcccCCeeeccCcc-CcccCCccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEe
Q 044353          392 NLVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNL-FTGRIPDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLN  470 (596)
Q Consensus       392 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  470 (596)
                      ...+.++.+++.+. ..|..+..+++|++|++++|+ ++...+++|.++++|+.|++++|+|+.+.+.+|..+++|++|+
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            34567888998887 678889999999999998764 8877778899999999999999999998899999999999999


Q ss_pred             cccccCccCCCCCCccCccccccccCCC-CCCCC
Q 044353          471 LSNNNLNGEIPSSTQLQSFGASSFAGND-LCGAP  503 (596)
Q Consensus       471 ls~N~l~~~~~~~~~~~~l~~~~~~~n~-lc~~~  503 (596)
                      |++|+++...+.......+..+++++|| .|.+.
T Consensus        87 Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~  120 (156)
T d2ifga3          87 LSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (156)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             ccCCCCcccChhhhccccccccccCCCcccCCch
Confidence            9999999666666666678899999999 67553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=3.1e-13  Score=120.71  Aligned_cols=76  Identities=22%  Similarity=0.319  Sum_probs=46.3

Q ss_pred             cccEEEccCCcccccCCccccCcccCCeeeccCccCcccCC-ccccCCCCCCEEECCCCcCcccCCcc----------cc
Q 044353          393 LVRSIDISKNNFSGEIPVEVTNLQGLQSLNLSHNLFTGRIP-DNIGVMRSIESLDFSANQLSGQIPQS----------MS  461 (596)
Q Consensus       393 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~----------~~  461 (596)
                      +|+.|++++|.++. + ..+..+++|+.|+|++|+++.... ..+..+++|+.|++++|.+....+..          +.
T Consensus        94 ~L~~L~l~~N~i~~-l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~  171 (198)
T d1m9la_          94 TLEELWISYNQIAS-L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVK  171 (198)
T ss_dssp             HCCEEECSEEECCC-H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHH
T ss_pred             cccccccccccccc-c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHH
Confidence            35566666666653 2 235666777777777777763221 34667777777777777766433321          45


Q ss_pred             CCCCCCEEe
Q 044353          462 NLSFLNYLN  470 (596)
Q Consensus       462 ~l~~L~~L~  470 (596)
                      .+|+|+.||
T Consensus       172 ~lp~L~~LD  180 (198)
T d1m9la_         172 RLPNLKKLD  180 (198)
T ss_dssp             HCSSCCEES
T ss_pred             HCCCcCEeC
Confidence            577777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.19  E-value=1.4e-13  Score=122.96  Aligned_cols=130  Identities=17%  Similarity=0.120  Sum_probs=93.7

Q ss_pred             CccccCCCCCCEEECcCCcccccCCccCcCCCCCCEEECcCCcCccccChhhhhcCCCCcEEEccCCeeeeEeCCCCCCC
Q 044353           14 TNQLGRFKTLRALDLSNNTVNGPIPLSLGQIANLEYLDLSNNKLNGTVSEIHFLNLTQLLVFRAHGNSLVFKINPNWVPP   93 (596)
Q Consensus        14 ~~~l~~l~~L~~L~ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l   93 (596)
                      +.+++.+++|++|+|++|.|+.+ + .+..+++|++|+|++|+++ .++. .+..+++|++|++++|.++..  +.+..+
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~-~i~~-~~~~~~~L~~L~l~~N~i~~l--~~~~~l  114 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIK-KIEN-LDAVADTLEELWISYNQIASL--SGIEKL  114 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEEC-SCSS-HHHHHHHCCEEECSEEECCCH--HHHHHH
T ss_pred             hhHHhcccccceeECcccCCCCc-c-cccCCccccChhhcccccc-cccc-ccccccccccccccccccccc--cccccc
Confidence            35677888888888888888854 3 5778888888888888887 6664 455566788888888887643  236667


Q ss_pred             CCccEEEccCCCCCCCcc-hhhcCCCCCcEEEcccCcCcccCChh---------HHhcCCCCcEEE
Q 044353           94 FQLAFLELRSCHLGPRFP-LWLQSQKKLYYLDISSTRISAKIPRG---------FWNSIFQYDYLN  149 (596)
Q Consensus        94 ~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~l~~n~i~~~~~~~---------~~~~l~~L~~L~  149 (596)
                      ++|+.|++++|+++.... ..++.+++|+.|++++|++....+..         +...+++|+.||
T Consensus       115 ~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         115 VNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            788888888888865432 46788888888888888775433221         234467788775

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.8e-08  Score=83.27  Aligned_cols=121  Identities=25%  Similarity=0.172  Sum_probs=69.8

Q ss_pred             CccEEeCcCCcCCCCCCcccCCCCCCcEEEcccccccccCCccCcCCCCCcEEEccCCcccccC--ChhhcCCCCCCEEE
Q 044353          204 NIEFLKLSKNHFSEDIPDCWMNWPRLRMLNLGNNNFTGSLPMSIGALNSLMSLNLRNNRLSGII--PTSFRNLSILKALD  281 (596)
Q Consensus       204 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~  281 (596)
                      ..+.|++++....   + .+..+..+..+....+... .++..+..++.|++|+|++|+++...  +..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~~---~-~l~~~~~~~~l~~~~~~~~-~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRSD---P-DLVAQNIDVVLNRRSSMAA-TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSSC---T-TTTTTTCCCCTTSHHHHHH-HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCCC---c-hhhhccchhhcchhhhHhh-hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            3445666554422   1 1333333344444444332 33444456778888888888887543  34566778888888


Q ss_pred             ccCCcccccCchhhhhhcccccEEEccCCcCcCcCCc-------ccCCCCCCcEEe
Q 044353          282 MGENELVGNIPTWIGETFSRLMILNLRSNKFHGDFPI-------QLCRLGSLQILD  330 (596)
Q Consensus       282 L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------~~~~l~~L~~L~  330 (596)
                      +++|.+. .+++..+-...+|+.+++++|.+......       .+..+|+|+.||
T Consensus        98 Ls~N~i~-~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          98 LSGNELK-SERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             CTTSCCC-CGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             cccCccc-cchhhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            8888876 55543332345677777777777644332       245677777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3e-07  Score=78.11  Aligned_cols=66  Identities=26%  Similarity=0.222  Sum_probs=30.8

Q ss_pred             cCcccCCeeeccCccCcccC--CccccCCCCCCEEECCCCcCcccCCccccCCCCCCEEecccccCcc
Q 044353          413 TNLQGLQSLNLSHNLFTGRI--PDNIGVMRSIESLDFSANQLSGQIPQSMSNLSFLNYLNLSNNNLNG  478 (596)
Q Consensus       413 ~~l~~L~~L~Ls~n~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ls~N~l~~  478 (596)
                      ..++.|++|+|++|+|+...  +..+..+++|+.|+|++|.++...+-.+.....|+.+++++|++++
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCc
Confidence            34455555555555554321  2234445555555555555553332222233345555555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.75  E-value=7.7e-06  Score=69.47  Aligned_cols=88  Identities=11%  Similarity=0.087  Sum_probs=48.0

Q ss_pred             cCCCCCCEEECcCC-ccccc----CCccCcCCCCCCEEECcCCcCccccC---hhhhhcCCCCcEEEccCCeeeeEe---
Q 044353           18 GRFKTLRALDLSNN-TVNGP----IPLSLGQIANLEYLDLSNNKLNGTVS---EIHFLNLTQLLVFRAHGNSLVFKI---   86 (596)
Q Consensus        18 ~~l~~L~~L~ls~n-~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~---   86 (596)
                      .+.++|++|+|+++ .++..    +..++...++|++|+|++|.+.....   ...+...+.|++|++++|.+....   
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~   91 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR   91 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence            35677888888763 45432    23345666777777777777652111   113445566677777666654221   


Q ss_pred             -CCCCCCCCCccEEEccCCC
Q 044353           87 -NPNWVPPFQLAFLELRSCH  105 (596)
Q Consensus        87 -~~~~~~l~~L~~L~L~~n~  105 (596)
                       ..++...+.|++|++++|.
T Consensus        92 l~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          92 LLRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHHhCCcCCEEECCCCc
Confidence             1133344445555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.61  E-value=1.5e-05  Score=67.53  Aligned_cols=63  Identities=21%  Similarity=0.269  Sum_probs=28.0

Q ss_pred             CCCccEEeCcCC-cCCCC----CCcccCCCCCCcEEEccccccccc----CCccCcCCCCCcEEEccCCccc
Q 044353          202 SKNIEFLKLSKN-HFSED----IPDCWMNWPRLRMLNLGNNNFTGS----LPMSIGALNSLMSLNLRNNRLS  264 (596)
Q Consensus       202 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~  264 (596)
                      .++|++|+|+++ .++..    +..++...+.|++|++++|.+...    +...+...+.|++|+|++|.+.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcc
Confidence            456666666653 33321    112233445555555555555421    1112223344555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.19  E-value=2.3e-05  Score=66.36  Aligned_cols=115  Identities=15%  Similarity=0.086  Sum_probs=63.7

Q ss_pred             CccccCCCCCCEEECcC-Cccccc----CCccCcCCCCCCEEECcCCcCccccC---hhhhhcCCCCcEEEccCCeeeeE
Q 044353           14 TNQLGRFKTLRALDLSN-NTVNGP----IPLSLGQIANLEYLDLSNNKLNGTVS---EIHFLNLTQLLVFRAHGNSLVFK   85 (596)
Q Consensus        14 ~~~l~~l~~L~~L~ls~-n~i~~~----~~~~~~~l~~L~~L~Ls~n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~   85 (596)
                      .....+.+.|++|++++ +.++..    +..++...++|++|+|++|.+.....   ...+...+.++.+++++|.+...
T Consensus        10 ~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~   89 (166)
T d1io0a_          10 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS   89 (166)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccch
Confidence            33445678888888887 456532    33445677888888888888762211   11455667777777777765422


Q ss_pred             e----CCCCCCCCCccEEEcc--CCCCCC----CcchhhcCCCCCcEEEcccC
Q 044353           86 I----NPNWVPPFQLAFLELR--SCHLGP----RFPLWLQSQKKLYYLDISST  128 (596)
Q Consensus        86 ~----~~~~~~l~~L~~L~L~--~n~l~~----~~~~~l~~l~~L~~L~l~~n  128 (596)
                      .    ...+...+.|+.++|.  +|.+..    .+...+...+.|+.|+++.+
T Consensus        90 g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          90 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             hHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            1    1233444555544443  333432    12223344555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.77  E-value=0.00022  Score=60.05  Aligned_cols=116  Identities=16%  Similarity=0.002  Sum_probs=78.2

Q ss_pred             cCcCCCCCCEEECcC-CcCccccC---hhhhhcCCCCcEEEccCCeeeeEeC----CCCCCCCCccEEEccCCCCCCCc-
Q 044353           40 SLGQIANLEYLDLSN-NKLNGTVS---EIHFLNLTQLLVFRAHGNSLVFKIN----PNWVPPFQLAFLELRSCHLGPRF-  110 (596)
Q Consensus        40 ~~~~l~~L~~L~Ls~-n~i~~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-  110 (596)
                      ...+.+.|++|+|++ +.++...-   ..++...++|++|++++|.+.....    ..+...+.++.+++++|.+.... 
T Consensus        12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            345679999999998 45652211   1255678999999999998753322    23455678999999999886433 


Q ss_pred             ---chhhcCCCCCcEEEcc--cCcCcccCChhHH---hcCCCCcEEEcccccc
Q 044353          111 ---PLWLQSQKKLYYLDIS--STRISAKIPRGFW---NSIFQYDYLNVSGNQI  155 (596)
Q Consensus       111 ---~~~l~~l~~L~~L~l~--~n~i~~~~~~~~~---~~l~~L~~L~l~~n~l  155 (596)
                         ...+...+.|+.++|+  +|.+.+.....+.   ...+.|++|++..+..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence               3556778889876664  5667544333332   3467899998876643