Citrus Sinensis ID: 044370

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MSIQVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHcccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHccccHHHHHHHHHHHccccccHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccccc
cccEEccccccccccccccccccccccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHcHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHccccccHHHHHHHEcccccEcHHHcccHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHcHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcHHHcHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHcHcccccccccHHHHHHHHHHEEccccc
msiqvpqissqnAKSQVMRRtanfhpsvwgdrfanytaedKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYnekysdddteddLYRISLRFRLLRQhgynvscdkfnmfkddkgnfkeslASDALGMLSLYEAAhlgvhgedILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRqplhrglprlehrRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILgvyfepnySLARRILTKVIAMTSIIDdiydvygtpeeLKLFTEVIERWDessmdqlpEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYydeskwfhenyipKMEEYMRVALVTSGYTMLTTVSFlgmdnivtketfdwvfsrpkiiRASEIIGRFMDdikshkfeqeRGHAASAVECYmkqhglseQEVCEELYRQVSNAWKDINeeclnptavpmPLLMRALNLARVIDVVYkegdgythvGNEMKQNVAALLIDQVPI
msiqvpqissqnakSQVMRRTanfhpsvwgDRFANYTAEDKMNHARDLKELKALKEEVGRKLLatagpiqlnLIDAIQRLGVGYHFERELEQALQHLYNekysdddteDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRqplhrglprleHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTketfdwvfsrpkIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
MSIQVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
***********************FHPSVWGDRFANYTAED******DLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLY*************YRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLI*****
***********************FHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLK*************VRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
*******************RTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
******************RRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
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MSIQVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q6Q3H3557 (-)-germacrene D synthase yes no 0.996 0.991 0.649 0.0
F6M8H7562 Probable sesquiterpene sy N/A no 0.994 0.980 0.600 0.0
F6M8H4559 Probable sesquiterpene sy N/A no 0.992 0.983 0.607 0.0
F6M8H5562 Probable sesquiterpene sy N/A no 0.994 0.980 0.596 0.0
Q6Q3H2556 Valencene synthase OS=Vit no no 0.996 0.992 0.616 0.0
B5A435559 Sesquiterpene synthase OS N/A no 0.985 0.976 0.599 0.0
E3W207559 Sesquiterpene synthase OS N/A no 0.992 0.983 0.597 0.0
E3W208562 Sesquiterpene synthase OS N/A no 0.987 0.973 0.588 0.0
F6M8H6562 Probable sesquiterpene sy N/A no 0.987 0.973 0.583 0.0
O23945556 (-)-alpha-pinene synthase N/A no 0.987 0.983 0.554 0.0
>sp|Q6Q3H3|TPSGD_VITVI (-)-germacrene D synthase OS=Vitis vinifera GN=VIT_19s0014g04930 PE=1 SV=1 Back     alignment and function desciption
 Score =  741 bits (1912), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 363/559 (64%), Positives = 429/559 (76%), Gaps = 7/559 (1%)

Query: 1   MSIQVPQI---SSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEE 57
           MS+Q   +    S+N   +V RR ANFHPS+WGD F +Y +E         + ++ LKEE
Sbjct: 1   MSVQSSGVLLAPSKNLSPEVGRRCANFHPSIWGDHFLSYASEFTNTDDHLKQHVQQLKEE 60

Query: 58  VGRKLLATA--GPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRIS 115
           V + L+A       +L LIDAIQRLGV YHFE E+++ L+H+++   S    E+D+Y  S
Sbjct: 61  VRKMLMAADDDSAQKLLLIDAIQRLGVAYHFESEIDEVLKHMFDG--SVVSAEEDVYTAS 118

Query: 116 LRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAI 175
           LRFRLLRQ GY+VSCD FN FKD++GNFKESL+SD  GMLSLYEA H  VHGEDILDEA+
Sbjct: 119 LRFRLLRQQGYHVSCDLFNNFKDNEGNFKESLSSDVRGMLSLYEATHFRVHGEDILDEAL 178

Query: 176 AFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLA 235
           AFTTTHL+S   H SNPL  QV HAL+QP+ +GLPRLE R Y S+YQ D SH KALL LA
Sbjct: 179 AFTTTHLQSATKHSSNPLAEQVVHALKQPIRKGLPRLEARHYFSVYQADDSHNKALLKLA 238

Query: 236 KLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRI 295
           KLDFNL+Q LH+KEL +IS WWKDLDFA KLPFARDR+VECYFWILGVYFEP +  ARRI
Sbjct: 239 KLDFNLLQKLHQKELSDISAWWKDLDFAHKLPFARDRVVECYFWILGVYFEPQFFFARRI 298

Query: 296 LTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEI 355
           LTKVIAMTSIIDDIYDVYGT EEL+LFTE +ERWD S++DQLPEYM+  + ALL +Y+EI
Sbjct: 299 LTKVIAMTSIIDDIYDVYGTLEELELFTEAVERWDISAIDQLPEYMRVCYQALLYVYSEI 358

Query: 356 EKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTT 415
           E+E+A EG SYR+ YAKEAMK  V  YY+E+KW     IP MEEYM VALVTS Y+ML T
Sbjct: 359 EEEMAKEGRSYRLYYAKEAMKNQVRAYYEEAKWLQVQQIPTMEEYMPVALVTSAYSMLAT 418

Query: 416 VSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQ 475
            SF+GM + VTKE+FDW+FS+PKI+RAS I+ R MDD+  HKFEQ+RGH ASAVECYMKQ
Sbjct: 419 TSFVGMGDAVTKESFDWIFSKPKIVRASAIVCRLMDDMVFHKFEQKRGHVASAVECYMKQ 478

Query: 476 HGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTH 535
           HG SEQE   E  + V  AWKDINEECL PTAVPMP+LMR LNLARVIDV+YK  DGYTH
Sbjct: 479 HGASEQETPNEFPQPVREAWKDINEECLIPTAVPMPILMRVLNLARVIDVIYKNEDGYTH 538

Query: 536 VGNEMKQNVAALLIDQVPI 554
            G  +K  V ++LID VPI
Sbjct: 539 FGAVLKDFVTSMLIDPVPI 557
Involved in the biosynthesis of germacrene D. Can use farnesyl diphosphate as substrate, but not geranyl diphosphate or geranylgeranyl diphosphate. Produces mainly (-)-germacrene D along with gamma-cadinene.
Vitis vinifera (taxid: 29760)
EC: 4EC: .EC: 2EC: .EC: 3EC: .EC: 7EC: 5
>sp|F6M8H7|SMST_SANMU Probable sesquiterpene synthase OS=Santalum murrayanum GN=STPS PE=3 SV=1 Back     alignment and function description
>sp|F6M8H4|SAST_SANAL Probable sesquiterpene synthase OS=Santalum album GN=SesquiTPS1 PE=3 SV=1 Back     alignment and function description
>sp|F6M8H5|SAUST_SANAS Probable sesquiterpene synthase OS=Santalum austrocaledonicum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|Q6Q3H2|TPSVS_VITVI Valencene synthase OS=Vitis vinifera GN=ValCS PE=1 SV=1 Back     alignment and function description
>sp|B5A435|STPS1_SANAL Sesquiterpene synthase OS=Santalum album PE=1 SV=1 Back     alignment and function description
>sp|E3W207|SAUSS_SANAS Sesquiterpene synthase OS=Santalum austrocaledonicum PE=2 SV=1 Back     alignment and function description
>sp|E3W208|SPISS_SANSP Sesquiterpene synthase OS=Santalum spicatum PE=2 SV=1 Back     alignment and function description
>sp|F6M8H6|SPIST_SANSP Probable sesquiterpene synthase OS=Santalum spicatum GN=SesquiTPS PE=3 SV=1 Back     alignment and function description
>sp|O23945|PINS_FRAVE (-)-alpha-pinene synthase OS=Fragaria vesca PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
392306394556 sesquiterpene synthase [Toona sinensis] 1.0 0.996 0.773 0.0
315134533556 sesquiterpene synthase [Toona sinensis] 1.0 0.996 0.771 0.0
224133712553 predicted protein [Populus trichocarpa] 0.992 0.994 0.684 0.0
224125898554 predicted protein [Populus trichocarpa] 0.992 0.992 0.673 0.0
359493937557 PREDICTED: (-)-germacrene D synthase [Vi 0.996 0.991 0.652 0.0
147828675557 hypothetical protein VITISV_013313 [Viti 0.996 0.991 0.651 0.0
147856860557 hypothetical protein VITISV_030783 [Viti 0.996 0.991 0.651 0.0
225461172557 PREDICTED: (-)-germacrene D synthase [Vi 0.996 0.991 0.647 0.0
75223414557 RecName: Full=(-)-germacrene D synthase 0.996 0.991 0.649 0.0
347664489557 (E)-beta-caryophyllene synthase [Vitis v 0.996 0.991 0.644 0.0
>gi|392306394|dbj|BAM24405.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
 Score =  897 bits (2319), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/556 (77%), Positives = 474/556 (85%), Gaps = 2/556 (0%)

Query: 1   MSIQVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGR 60
           MS+ V QI S  AK  +MRR AN+HP++WGDRF NY   DKMNH   L+ ++ LK+ V R
Sbjct: 1   MSVPVSQIPSLKAKGVIMRRNANYHPNIWGDRFINYVPVDKMNHTCHLQAIEELKDAVRR 60

Query: 61  KLLATAGPIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRL 120
           +LL   G  QLNLIDAIQRLGVGYHFERELE+ALQH+Y++ +  DDTED+LY ISLRFRL
Sbjct: 61  ELLTATGLSQLNLIDAIQRLGVGYHFERELEEALQHVYHKNHYHDDTEDNLYSISLRFRL 120

Query: 121 LRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTT 180
           LRQHGY VSCD  N FKD+K NFKESL +D  GMLSLYEAAH GVHGEDILDEAIAFTTT
Sbjct: 121 LRQHGYYVSCDILNKFKDEKDNFKESLTTDVPGMLSLYEAAHPGVHGEDILDEAIAFTTT 180

Query: 181 HLKSVAT-HLSNP-LKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLD 238
           HLKS+A  HL NP L +QV HALRQPLHRG+PRLE+RRYISIYQD+ SH KAL+ L KLD
Sbjct: 181 HLKSLAIDHLRNPSLASQVIHALRQPLHRGVPRLENRRYISIYQDEVSHNKALVKLFKLD 240

Query: 239 FNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTK 298
           FNLVQSLHKKEL EISRWWK+LD A KLPFARDR+VECYFWI+GVY+EP YSLAR+ILTK
Sbjct: 241 FNLVQSLHKKELSEISRWWKELDLANKLPFARDRLVECYFWIIGVYYEPQYSLARKILTK 300

Query: 299 VIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKE 358
            IAM SIIDDIYDVYGTPEEL LFT+ IERWD S MDQLPEYMQ F+ ALLDLYNEIEKE
Sbjct: 301 TIAMGSIIDDIYDVYGTPEELNLFTDAIERWDASCMDQLPEYMQIFYEALLDLYNEIEKE 360

Query: 359 IANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF 418
           IA EGWSYRV YAKEAMKIL  GY+DESKWFH NYIP MEEYM VALVTSGYTMLTT SF
Sbjct: 361 IAKEGWSYRVHYAKEAMKILARGYHDESKWFHNNYIPTMEEYMHVALVTSGYTMLTTSSF 420

Query: 419 LGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGL 478
           LGMDNIVTKETFDWVFS PKIIRAS  I R MDD+KSHKFEQERGHAASAVECYM+QHG+
Sbjct: 421 LGMDNIVTKETFDWVFSGPKIIRASGTIARLMDDVKSHKFEQERGHAASAVECYMEQHGV 480

Query: 479 SEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGN 538
           SEQEVC+E Y+QV NAWKDIN++ L PT VPM +LMR LNLARVIDVVYKEGDGYTHVG 
Sbjct: 481 SEQEVCKEFYQQVGNAWKDINQDFLKPTDVPMTILMRVLNLARVIDVVYKEGDGYTHVGK 540

Query: 539 EMKQNVAALLIDQVPI 554
            MK+NVA+LLID +P+
Sbjct: 541 VMKENVASLLIDPIPV 556

Source: Toona sinensis

Species: Toona sinensis

Genus: Toona

Family: Meliaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|315134533|dbj|BAJ46125.1| sesquiterpene synthase [Toona sinensis] Back     alignment and taxonomy information
>gi|224133712|ref|XP_002321642.1| predicted protein [Populus trichocarpa] gi|222868638|gb|EEF05769.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125898|ref|XP_002329744.1| predicted protein [Populus trichocarpa] gi|222870652|gb|EEF07783.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359493937|ref|XP_003634696.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|302143188|emb|CBI20483.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147828675|emb|CAN68620.1| hypothetical protein VITISV_013313 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147856860|emb|CAN83470.1| hypothetical protein VITISV_030783 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225461172|ref|XP_002282996.1| PREDICTED: (-)-germacrene D synthase [Vitis vinifera] gi|313755404|gb|ADR74193.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|75223414|sp|Q6Q3H3.1|TPSGD_VITVI RecName: Full=(-)-germacrene D synthase gi|45478053|gb|AAS66357.1| (-)-germacrene D synthase [Vitis vinifera] Back     alignment and taxonomy information
>gi|347664489|gb|AEP17005.1| (E)-beta-caryophyllene synthase [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
UNIPROTKB|B5A435559 B5A435 "Sesquiterpene synthase 0.985 0.976 0.599 2.3e-181
UNIPROTKB|B2KSJ5571 B2KSJ5 "(+)-gamma-cadinene syn 0.998 0.968 0.507 5.5e-148
UNIPROTKB|J7LMP2565 J7LMP2 "Bicyclogermacrene synt 0.994 0.975 0.502 8.4e-145
UNIPROTKB|B3TPQ6550 B3TPQ6 "Beta-cubebene synthase 0.981 0.989 0.492 1.1e-144
UNIPROTKB|J7LP58564 J7LP58 "Alpha-copaene/delta-ca 0.981 0.964 0.503 1.2e-143
UNIPROTKB|J7LJN5555 J7LJN5 "Beta-caryophyllene syn 0.976 0.974 0.493 9.9e-142
UNIPROTKB|Q49SP5554 Q49SP5 "Germacrene A synthase" 0.972 0.972 0.476 2e-136
UNIPROTKB|Q49SP4545 Q49SP4 "Germacrene D synthase 0.954 0.970 0.480 3.2e-136
UNIPROTKB|E2E2N7555 TPS4 "Bicyclogermacrene syntha 0.967 0.965 0.446 8.7e-127
UNIPROTKB|Q49SP6554 Q49SP6 "Germacrene D synthase 0.967 0.967 0.458 2.9e-126
UNIPROTKB|B5A435 B5A435 "Sesquiterpene synthase" [Santalum album (taxid:35974)] Back     alignment and assigned GO terms
 Score = 1760 (624.6 bits), Expect = 2.3e-181, P = 2.3e-181
 Identities = 331/552 (59%), Positives = 416/552 (75%)

Query:     4 QVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLL 63
             +VP  S  N K ++ R  ANF PS+WGDRF NY  ED+   A+  ++++ LKE+V R+L 
Sbjct:     5 KVPISSVPNLK-ELSRPIANFPPSIWGDRFINYACEDENEQAQKERQVEELKEQVRRELA 63

Query:    64 ATAG-PIQ-LNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDT---EDDLYRISLRF 118
             AT   P+Q LN+IDA QRLG+ YHFE E+E++L+H+Y   Y +++      DLY ++L F
Sbjct:    64 ATVDKPLQQLNIIDATQRLGIAYHFENEIEESLEHIYLHTYVENNCFQGSHDLYSVALWF 123

Query:   119 RLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFT 178
             RLLRQ GY VSCD F+ F+D + NFK SL  DA G+L LYEA HL VHGE++LD+A+ F 
Sbjct:   124 RLLRQDGYKVSCDVFDKFRDYEDNFKNSLMEDAKGLLELYEATHLSVHGEEMLDDALEFA 183

Query:   179 TTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLD 238
              T L+S+  HL+ PL  QVRHAL +PL +GLPRLE   +  IY+   SH KALL LAKLD
Sbjct:   184 KTRLESIVNHLNYPLAEQVRHALYRPLRKGLPRLEAVYFFRIYEAYDSHNKALLKLAKLD 243

Query:   239 FNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTK 298
             FNL+QSLHKKEL +++RWWK LDFA K PFARDR+VE YFW+LGVYFEP YSLAR+I+ K
Sbjct:   244 FNLLQSLHKKELSDMARWWKSLDFAAKFPFARDRLVEGYFWVLGVYFEPQYSLARKIIIK 303

Query:   299 VIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKE 358
             V  M S IDDIYD YGT +EL+LFT+ ++RWD  S+DQLPEYM+  + ++LD+YNEIE+E
Sbjct:   304 VFTMISTIDDIYDAYGTLDELELFTKAMQRWDVGSLDQLPEYMKPCYKSILDVYNEIEEE 363

Query:   359 IANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSF 418
             + N+G  +R+ YAKE MK LVEGY DE+KW HE Y+P  EEYM VALVTSGYT LTT+S+
Sbjct:   364 MDNQGSLFRMHYAKEVMKKLVEGYMDEAKWCHEKYVPTFEEYMPVALVTSGYTFLTTISY 423

Query:   419 LGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGL 478
             LGM  I +KE FDW+FS P +I ASE + R MDD++SHKFEQERGH AS +ECYMKQ+G+
Sbjct:   424 LGMGEIASKEAFDWLFSHPPVIEASESVCRLMDDMRSHKFEQERGHVASGIECYMKQYGV 483

Query:   479 SEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGN 538
             +E+E  +E  +Q+  AWKDINEECL P  VP PLLMR LNL RVIDV+YK  DGYTHV  
Sbjct:   484 TEEEAHDEFRKQLVKAWKDINEECLRPYRVPKPLLMRILNLTRVIDVIYKNEDGYTHVKK 543

Query:   539 EMKQNVAALLID 550
              MK N+A+LLID
Sbjct:   544 AMKDNIASLLID 555
GO:0010334 "sesquiterpene synthase activity" evidence=IDA
GO:0033383 "geranyl diphosphate metabolic process" evidence=IDA
UNIPROTKB|B2KSJ5 B2KSJ5 "(+)-gamma-cadinene synthase" [Cucumis melo (taxid:3656)] Back     alignment and assigned GO terms
UNIPROTKB|J7LMP2 J7LMP2 "Bicyclogermacrene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|B3TPQ6 B3TPQ6 "Beta-cubebene synthase" [Magnolia grandiflora (taxid:3406)] Back     alignment and assigned GO terms
UNIPROTKB|J7LP58 J7LP58 "Alpha-copaene/delta-cadinene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|J7LJN5 J7LJN5 "Beta-caryophyllene synthase" [Phyla dulcis (taxid:542674)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP5 Q49SP5 "Germacrene A synthase" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP4 Q49SP4 "Germacrene D synthase 1" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms
UNIPROTKB|E2E2N7 TPS4 "Bicyclogermacrene synthase" [Origanum vulgare (taxid:39352)] Back     alignment and assigned GO terms
UNIPROTKB|Q49SP6 Q49SP6 "Germacrene D synthase 2" [Pogostemon cablin (taxid:28511)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
J9RLZ7TPS1_VALOF4, ., 2, ., 3, ., 7, 50.50270.95840.9431N/Ano
P93665DCS1_GOSHI4, ., 2, ., 3, ., 1, 30.53340.98550.9855N/Ano
Q8SA63CARS_ARTAN4, ., 2, ., 3, ., 5, 70.50450.96020.9708N/Ano
O49853DCS4_GOSAR4, ., 2, ., 3, ., 1, 30.54240.98550.9855N/Ano
O23945PINS_FRAVE4, ., 2, ., 3, ., 1, 40.55410.98730.9838N/Ano
F6M8H5SAUST_SANAS4, ., 2, ., 3, ., -0.59670.99450.9804N/Ano
F6M8H4SAST_SANAL4, ., 2, ., 3, ., -0.60720.99270.9838N/Ano
F6M8H7SMST_SANMU4, ., 2, ., 3, ., -0.60030.99450.9804N/Ano
F6M8H6SPIST_SANSP4, ., 2, ., 3, ., -0.58300.98730.9733N/Ano
Q39978VTSS1_HYOMU4, ., 2, ., 3, ., 2, 10.50680.91150.9711N/Ano
Q43714DCS3_GOSAR4, ., 2, ., 3, ., 1, 30.54800.97470.9729N/Ano
Q39760DCS2_GOSAR4, ., 2, ., 3, ., 1, 30.54610.98550.9855N/Ano
Q39761DCS1_GOSAR4, ., 2, ., 3, ., 1, 30.54240.98550.9855N/Ano
E3W207SAUSS_SANAS4, ., 2, ., 3, ., -0.59710.99270.9838N/Ano
E3W208SPISS_SANSP4, ., 2, ., 3, ., -0.58840.98730.9733N/Ano
B5A435STPS1_SANAL4, ., 2, ., 3, ., -0.59960.98550.9767N/Ano
Q6Q3H3TPSGD_VITVI4, ., 2, ., 3, ., 7, 50.64930.99630.9910yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.30.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00150645
hypothetical protein (553 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
cd00684542 cd00684, Terpene_cyclase_plant_C1, Plant Terpene C 0.0
cd00868284 cd00868, Terpene_cyclase_C1, Terpene cyclases, Cla 1e-123
pfam03936270 pfam03936, Terpene_synth_C, Terpene synthase famil 1e-121
pfam01397177 pfam01397, Terpene_synth, Terpene synthase, N-term 1e-79
PLN02279784 PLN02279, PLN02279, ent-kaur-16-ene synthase 1e-49
cd00385243 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth 8e-42
PLN02592800 PLN02592, PLN02592, ent-copalyl diphosphate syntha 4e-26
PLN0215096 PLN02150, PLN02150, terpene synthase/cyclase famil 5e-19
>gnl|CDD|173832 cd00684, Terpene_cyclase_plant_C1, Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
 Score =  755 bits (1951), Expect = 0.0
 Identities = 291/543 (53%), Positives = 379/543 (69%), Gaps = 11/543 (2%)

Query: 19  RRTANFHPSVWGD-RFANYTAEDKMNHARDLKELKALKEEVGRKLLATAGPI----QLNL 73
           R +ANF PS+WGD  F + +++         +E++ LKEEV + L  +  P+    +L L
Sbjct: 1   RPSANFPPSLWGDDHFLSLSSDYSEEDEL-EEEIEELKEEVRKMLEDSEYPVDLFERLWL 59

Query: 74  IDAIQRLGVGYHFERELEQALQHLYNE-KYSDDDTEDDLYRISLRFRLLRQHGYNVSCDK 132
           ID +QRLG+ YHFE E+++ L ++Y       +  EDDLY  +L FRLLRQHGYNVS D 
Sbjct: 60  IDRLQRLGISYHFEDEIKEILDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDV 119

Query: 133 FNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTHLKSVA---THL 189
           F  FKD+ G FKESL  D  GMLSLYEA+HL   GEDILDEA++FTT HL+        +
Sbjct: 120 FKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILDEALSFTTKHLEEKLESNWII 179

Query: 190 SNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKE 249
              L  ++ +AL  PLH  LPRLE R YI  Y+ +  H + LL LAKLDFN++Q+LH++E
Sbjct: 180 DPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE 239

Query: 250 LCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDI 309
           L  +SRWWKDLD A KLPFARDR+VECYFW  G YFEP YSLAR  L K IA+ ++IDD 
Sbjct: 240 LKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDT 299

Query: 310 YDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQ 369
           YDVYGT EEL+LFTE +ERWD S++DQLPEYM+  F ALL+  NEIE+E+  EG SY V 
Sbjct: 300 YDVYGTLEELELFTEAVERWDISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVP 359

Query: 370 YAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKET 429
           Y KEA K LV+ Y  E+KW HE Y+P  EEYM  ALV+ G   L   SFLGM +I+T+E 
Sbjct: 360 YLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIGLGPLLLTSFLGMGDILTEEA 419

Query: 430 FDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYR 489
           F+W+ SRPK++RAS  IGR M+DI +++ E +RG  AS++ECYMK++G+SE+E  EE+ +
Sbjct: 420 FEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKK 479

Query: 490 QVSNAWKDINEECLNP-TAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALL 548
            + +AWK++NEE L P + VP P+  R LNLARVIDV YKEGDG+TH   E+K ++ +LL
Sbjct: 480 MIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLL 539

Query: 549 IDQ 551
            + 
Sbjct: 540 FEP 542

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal region forms a cap over the catalytic core. Loss of diphosphate from the enzyme-bound substrate (GPP, FPP, or GGPP) results in an allylic carbocation that electrophilically attacks a double bond further down the terpene chain to effect the first ring closure. Unlike monoterpene, sesquiterene, and macrocyclic diterpenes synthases, which undergo substrate ionization by diphosphate ester scission, Tpsc-like diterpene synthases catalyze cyclization reactions by an initial protonation step producing a copalyl diphosphate intermediate. These enzymes lack the aspartate-rich sequences mentioned above. Most diterpene synthases have an N-terminal, internal element (approx 210 aa) whose function is unknown. Length = 542
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1 Back     alignment and domain information
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding domain Back     alignment and domain information
>gnl|CDD|216477 pfam01397, Terpene_synth, Terpene synthase, N-terminal domain Back     alignment and domain information
>gnl|CDD|177918 PLN02279, PLN02279, ent-kaur-16-ene synthase Back     alignment and domain information
>gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>gnl|CDD|215321 PLN02592, PLN02592, ent-copalyl diphosphate synthase Back     alignment and domain information
>gnl|CDD|177811 PLN02150, PLN02150, terpene synthase/cyclase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
cd00684542 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, C 100.0
PLN02279784 ent-kaur-16-ene synthase 100.0
PLN02592800 ent-copalyl diphosphate synthase 100.0
PF01397183 Terpene_synth: Terpene synthase, N-terminal domain 100.0
PF03936270 Terpene_synth_C: Terpene synthase family, metal bi 100.0
cd00868284 Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp 100.0
cd00687303 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl 100.0
PLN0215096 terpene synthase/cyclase family protein 99.97
cd00385243 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym 99.85
PF06330376 TRI5: Trichodiene synthase (TRI5); InterPro: IPR02 97.97
cd00686357 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene C 97.86
cd00867236 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. 93.88
PF00494267 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR 91.18
cd00685259 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase 89.28
TIGR03465266 HpnD squalene synthase HpnD. The genes of this fam 88.6
TIGR02749322 prenyl_cyano solanesyl diphosphate synthase. Membe 83.18
>cd00684 Terpene_cyclase_plant_C1 Plant Terpene Cyclases, Class 1 Back     alignment and domain information 
Probab=100.00  E-value=4.6e-153  Score=1263.44  Aligned_cols=532  Identities=55%  Similarity=0.916  Sum_probs=510.2

Q ss_pred             ccCCCCCCCCCcc-cccccCchhhhchhHHHHHHHHHHHHHHHHhhc---cCCC-cchhHHHHHHHhCCccccHHHHHHH
Q 044370           19 RRTANFHPSVWGD-RFANYTAEDKMNHARDLKELKALKEEVGRKLLA---TAGP-IQLNLIDAIQRLGVGYHFERELEQA   93 (554)
Q Consensus        19 r~~~~~~ps~w~~-~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~---~~~~-~~l~liD~lqrLGi~~hF~~EI~~~   93 (554)
                      ||++|||||+||| +|+++++++.. ...+.+++++||++||+||..   ..|+ ++|+|||+||||||+|||++||+++
T Consensus         1 r~~~~~~~~~w~~~~~~s~~~~~~~-~~~~~~~~~~lk~~v~~~~~~~~~~~~~~~~l~liD~lqrLGi~~hF~~EI~~~   79 (542)
T cd00684           1 RPSANFPPSLWGDDHFLSLSSDYSE-EDELEEEIEELKEEVRKMLEDSEYPVDLFERLWLIDRLQRLGISYHFEDEIKEI   79 (542)
T ss_pred             CCCCCCCCCcCCCcceeecCCCcch-hHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHcCchhhhHHHHHHH
Confidence            7899999999999 77776554432 226789999999999999986   4588 9999999999999999999999999


Q ss_pred             HHHHHhhcCCCC-CCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchHHH
Q 044370           94 LQHLYNEKYSDD-DTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILD  172 (554)
Q Consensus        94 L~~~~~~~~~~~-~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~iLd  172 (554)
                      |++||++|.++. ....||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|||
T Consensus        80 L~~i~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~~~~g~f~~~~~~d~~g~l~Ly~As~l~~~gE~iLd  159 (542)
T cd00684          80 LDYIYRYWTERGESNEDDLYTTALGFRLLRQHGYNVSSDVFKKFKDEDGKFKESLTQDVKGMLSLYEASHLSFPGEDILD  159 (542)
T ss_pred             HHHHHHhhcccccccCCCHHHHHHHHHHHHHcCCCcCHHHHhhhcCCCCCcCchhhhhhHHHHHHHHHhhcCCCCcHHHH
Confidence            999999986532 2357999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhHhhc---CCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHH
Q 044370          173 EAIAFTTTHLKSVATH---LSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKE  249 (554)
Q Consensus       173 ea~~ft~~~L~~~~~~---~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~E  249 (554)
                      ||++||++||++.++.   ++++|+++|++||++|+|+++||||||+||++|++++++|++||||||||||+||++||+|
T Consensus       160 eA~~ft~~~L~~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~Y~~~~~~n~~lLelAkldfn~~Q~~hq~E  239 (542)
T cd00684         160 EALSFTTKHLEEKLESNWIIDPDLSGEIEYALEIPLHASLPRLEARWYIEFYEQEDDHNETLLELAKLDFNILQALHQEE  239 (542)
T ss_pred             HHHHHHHHHHHHHhhccCCCCchHHHHHHHHccCchhcCCchHHHHHHHHHhCCCccccHHHHHHHHHHHHHHhHhHHHH
Confidence            9999999999999886   7899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhc
Q 044370          250 LCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERW  329 (554)
Q Consensus       250 l~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rW  329 (554)
                      |+.+++||+++||.+++||+|+|+++||||++|++|+|++|.+|+++||+++|+|++||+||.|||++|++.||+||+||
T Consensus       240 l~~~~rWwk~~gL~~~l~~aRdr~ve~yf~~~a~~feP~~s~~Rl~~aK~~~l~~~iDD~fD~~gt~eEl~~ft~ai~rw  319 (542)
T cd00684         240 LKILSRWWKDLDLASKLPFARDRLVECYFWAAGTYFEPQYSLARIALAKTIALITVIDDTYDVYGTLEELELFTEAVERW  319 (542)
T ss_pred             HHHHhHHHHhcCCcccCCcccchhHHHHHHHHhcccCccchHHHHHHHHHHHHHhhhHhhhccCCCHHHHHHHHHHHHhc
Confidence            99999999999998888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccc
Q 044370          330 DESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSG  409 (554)
Q Consensus       330 d~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g  409 (554)
                      |+++++.+|+|||+||.++++++++++.++.++|+.+++.|++++|++++++|++||+|+++||+||++|||++|++|+|
T Consensus       320 d~~~~~~lPe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~a~l~EA~w~~~g~vPt~eEYl~~~~~S~g  399 (542)
T cd00684         320 DISAIDQLPEYMKIVFKALLNTVNEIEEELLKEGGSYVVPYLKEAWKDLVKAYLVEAKWAHEGYVPTFEEYMENALVSIG  399 (542)
T ss_pred             cccchhhccHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhhhhHHhh
Confidence            99999999999999999999999999999999888889999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHH
Q 044370          410 YTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYR  489 (554)
Q Consensus       410 ~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~  489 (554)
                      +++++++++++||..+|+++++|+..+|+|+++++.++||+|||+|+++|+++|+++|+|.|||+|+|+|+|+|++++++
T Consensus       400 ~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~rL~NDi~S~~kE~~rGdv~n~V~~ymke~g~s~eeA~~~i~~  479 (542)
T cd00684         400 LGPLLLTSFLGMGDILTEEAFEWLESRPKLVRASSTIGRLMNDIATYEDEMKRGDVASSIECYMKEYGVSEEEAREEIKK  479 (542)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHhccHHHHHHHHHHHHHhcChhhhHHHHhcCCcccHHHHHHHhcCCCHHHHHHHHHH
Confidence            99999999999999999999999777799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhcCC-CCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccc
Q 044370          490 QVSNAWKDINEECLNP-TAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQ  551 (554)
Q Consensus       490 ~i~~~~k~ln~e~l~~-~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~p  551 (554)
                      +|+++||++|++++++ +++|++|+++++|+||+++++|+++||||.|++.+|++|++||++|
T Consensus       480 ~ie~~wk~ln~e~l~~~~~~p~~~~~~~~n~~r~~~~~Y~~~D~~t~~~~~~~~~i~~ll~~p  542 (542)
T cd00684         480 MIEDAWKELNEEFLKPSSDVPRPIKQRFLNLARVIDVFYKEGDGFTHPEGEIKDHITSLLFEP  542 (542)
T ss_pred             HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCC
Confidence            9999999999999987 7899999999999999999999999999999878999999999998

This CD includes a diverse group of monomeric plant terpene cyclases (Tspa-Tspf) that convert the acyclic isoprenoid diphosphates, geranyl diphosphate (GPP), farnesyl diphosphate (FPP), or geranylgeranyl diphosphate (GGPP) into cyclic monoterpenes, diterpenes, or sesquiterpenes, respectively; a few form acyclic species. Terpnoid cyclases are soluble enzymes localized to the cytosol (sesquiterpene synthases) or plastids (mono- and diterpene synthases). All monoterpene and diterpene synthases have restrict substrate specificity, however, some sesquiterpene synthases can accept both FPP and GPP. The catalytic site consists of a large central cavity formed by mostly antiparallel alpha helices with two aspartate-rich regions located on opposite walls. These residues mediate binding of prenyl diphosphates, via bridging Mg2+ ions (K+ preferred by gymnosperm cyclases), inducing conformational changes such that an N-terminal regi
>PLN02279 ent-kaur-16-ene synthase Back     alignment and domain information
>PLN02592 ent-copalyl diphosphate synthase Back     alignment and domain information
>PF01397 Terpene_synth: Terpene synthase, N-terminal domain; InterPro: IPR001906 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>PF03936 Terpene_synth_C: Terpene synthase family, metal binding domain; InterPro: IPR005630 Sequences containing this domain belong to the terpene synthase family Back     alignment and domain information
>cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 Back     alignment and domain information
>cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 Back     alignment and domain information
>PLN02150 terpene synthase/cyclase family protein Back     alignment and domain information
>cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 Back     alignment and domain information
>PF06330 TRI5: Trichodiene synthase (TRI5); InterPro: IPR024652 This family consists of several fungal trichodiene synthase proteins (EC:4 Back     alignment and domain information
>cd00686 Terpene_cyclase_cis_trans_C1 Cis, Trans, Terpene Cyclases, Class 1 Back     alignment and domain information
>cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases Back     alignment and domain information
>PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 Back     alignment and domain information
>cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail Back     alignment and domain information
>TIGR03465 HpnD squalene synthase HpnD Back     alignment and domain information
>TIGR02749 prenyl_cyano solanesyl diphosphate synthase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3g4d_A554 Crystal Structure Of (+)-Delta-Cadinene Synthase Fr 1e-175
3lz9_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-149
3m01_A550 The Crystal Structure Of 5-Epi-Aristolochene Syntha 1e-148
5eau_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-148
5eas_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-148
1hxc_A548 Crystal Structure Of Teas C440w Length = 548 1e-148
5eat_A548 5-Epi-Aristolochene Synthase From Nicotiana Tabacum 1e-148
4di5_A535 Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synt 1e-147
1hx9_A548 Crystal Structure Of Teas W273s Form 1 Length = 548 1e-147
1hxg_A548 Crystal Structure Of Teas W273sC440W Length = 548 1e-147
3n0f_A555 Crystal Structure Of Isoprene Synthase From Grey Po 3e-95
1n1b_A549 Crystal Structure Of (+)-bornyl Diphosphate Synthas 1e-90
2ong_A543 Crystal Structure Of Of Limonene Synthase With 2- F 4e-85
2j5c_A569 Rational Conversion Of Substrate And Product Specif 4e-83
3sae_A817 Structure Of A Three-Domain Sesquiterpene Synthase: 5e-81
3s9v_A785 Abietadiene Synthase From Abies Grandis Length = 78 9e-75
3p5p_A764 Crystal Structure Of Taxadiene Synthase From Pacifi 5e-70
3pya_A727 Crystal Structure Of Ent-Copalyl Diphosphate Syntha 3e-18
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From Gossypium Arboreum And Evolutionary Divergence Of Metal Binding Motifs For Catalysis Length = 554 Back     alignment and structure 
Iteration: 1

 Score =  613 bits (1580), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 300/553 (54%), Positives = 390/553 (70%), Gaps = 7/553 (1%)
Query: 4   QVPQISSQNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLL 63
           Q+P  S  ++    MR  A+F PS+WGD F N    DK   A   K  + LKEEV + ++
Sbjct: 7   QMPSSSPLSSNKDEMRPKADFQPSIWGDLFLN--CPDKNIDAETEKRHQQLKEEVRKMIV 64
Query: 64  AT-AGPIQ-LNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRISLRFRLL 121
           A  A   Q L  ID++QRLGV YHF +E+E  L+++Y   ++++D E+DLY  S+RFRLL
Sbjct: 65  APMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIY---HNNNDAENDLYTTSIRFRLL 121
Query: 122 RQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAIAFTTTH 181
           R+HGYNVSCD FN FKD++GNFK S+ SD  G+L LY+A++L VHGEDILDEAI+FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 182 LKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNL 241
           L      L +PL  +V HAL+Q + RGLPR+E R Y+S+YQD  SH KALL  AK+DFN+
Sbjct: 182 LSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNM 241
Query: 242 VQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIA 301
           +Q LH+KEL EI RWWKDLDF RKLP+ARDR+VE YFWI GVYFEP YSL R++LTKVIA
Sbjct: 242 LQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIA 301
Query: 302 MTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIAN 361
           M SI+DD YD Y T EEL  +T  IERWD   +D++PEYM+  + ALLD+Y E+ + +A 
Sbjct: 302 MASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAE 361
Query: 362 EGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGM 421
            G  YRV+YAK AM  L + Y  E+KW  +NY P  EE+   AL T GY ML   SF+GM
Sbjct: 362 HGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGM 421
Query: 422 DNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQ 481
            +IVT ETF W  S PKII+AS II RFMDD+  HKF+  R    SA+ECYM+++G++ Q
Sbjct: 422 GDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQ 481
Query: 482 EVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMK 541
           E  +   + V +AWKD+N+E L PT +P  +L R+LNLARV+DV+Y+EGDGYT+VG   K
Sbjct: 482 EAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAK 541
Query: 542 QNVAALLIDQVPI 554
             + +LLI+ + +
Sbjct: 542 GGITSLLIEPIAL 554
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4 Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphospha Length = 550 Back     alignment and structure
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl Diphosphate Length = 550 Back     alignment and structure
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum Length = 548 Back     alignment and structure
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w Length = 548 Back     alignment and structure
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With Substrate Analog Farnesyl Hydroxyphosphonate Length = 548 Back     alignment and structure
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase From Nicotiana Tobaccum With Geraniline Length = 535 Back     alignment and structure
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1 Length = 548 Back     alignment and structure
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W Length = 548 Back     alignment and structure
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar Leaves (Populus X Canescens) Length = 555 Back     alignment and structure
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From Sage Length = 549 Back     alignment and structure
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2- Fluorogeranyl Diphosphate (Fgpp). Length = 543 Back     alignment and structure
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity In A Monoterpene Synthase. Structural Insights Into The Molecular Basis Of Rapid Evolution. Length = 569 Back     alignment and structure
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A Prospective Target For Advanced Biofuels Production Length = 817 Back     alignment and structure
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis Length = 785 Back     alignment and structure
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew (Taxus Brevifolia) In Complex With Mg2+ And 13-Aza-13,14-Dihydrocopalyl Diphosphate Length = 764 Back     alignment and structure
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From Arabidopsis Thaliana In Complex With (S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 0.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 0.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 0.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 0.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 0.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 0.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 1e-174
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 1e-174
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 1e-171
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 1e-116
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 2e-40
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 9e-37
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 6e-21
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 6e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Length = 554 Back     alignment and structure
 Score =  609 bits (1572), Expect = 0.0
 Identities = 297/559 (53%), Positives = 390/559 (69%), Gaps = 10/559 (1%)

Query: 1   MSIQVPQISS---QNAKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEE 57
           M+ QV Q+ S    ++    MR  A+F PS+WGD F N   ++        K  + LKEE
Sbjct: 1   MASQVSQMPSSSPLSSNKDEMRPKADFQPSIWGDLFLNCPDKNIDAETE--KRHQQLKEE 58

Query: 58  VGRKLLATAG--PIQLNLIDAIQRLGVGYHFERELEQALQHLYNEKYSDDDTEDDLYRIS 115
           V + ++A       +L  ID++QRLGV YHF +E+E  L+++Y+    ++D E+DLY  S
Sbjct: 59  VRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHN---NNDAENDLYTTS 115

Query: 116 LRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDILDEAI 175
           +RFRLLR+HGYNVSCD FN FKD++GNFK S+ SD  G+L LY+A++L VHGEDILDEAI
Sbjct: 116 IRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAI 175

Query: 176 AFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLA 235
           +FTT HL      L +PL  +V HAL+Q + RGLPR+E R Y+S+YQD  SH KALL  A
Sbjct: 176 SFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFA 235

Query: 236 KLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRI 295
           K+DFN++Q LH+KEL EI RWWKDLDF RKLP+ARDR+VE YFWI GVYFEP YSL R++
Sbjct: 236 KIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKM 295

Query: 296 LTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEI 355
           LTKVIAM SI+DD YD Y T EEL  +T  IERWD   +D++PEYM+  + ALLD+Y E+
Sbjct: 296 LTKVIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEM 355

Query: 356 EKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGYTMLTT 415
            + +A  G  YRV+YAK AM  L + Y  E+KW  +NY P  EE+   AL T GY ML  
Sbjct: 356 VQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAI 415

Query: 416 VSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQ 475
            SF+GM +IVT ETF W  S PKII+AS II RFMDD+  HKF+  R    SA+ECYM++
Sbjct: 416 TSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEE 475

Query: 476 HGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTH 535
           +G++ QE  +   + V +AWKD+N+E L PT +P  +L R+LNLARV+DV+Y+EGDGYT+
Sbjct: 476 YGVTAQEAYDVFNKHVESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTY 535

Query: 536 VGNEMKQNVAALLIDQVPI 554
           VG   K  + +LLI+ + +
Sbjct: 536 VGKAAKGGITSLLIEPIAL 554
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Length = 555 Back     alignment and structure
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Length = 550 Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Length = 569 Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Length = 543 Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Length = 549 Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Length = 817 Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Length = 785 Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Length = 764 Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Length = 727 Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Length = 337 Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Length = 382 Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Length = 320 Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Length = 300 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3g4d_A554 (+)-delta-cadinene synthase isozyme XC1; cyclase, 100.0
3m00_A550 Aristolochene synthase; plant terpenoid cyclase, l 100.0
3n0f_A555 Isoprene synthase; terpene cyclase fold, hemiterpe 100.0
2ong_A543 4S-limonene synthase; monoterpene synthase, monote 100.0
1n1b_A549 (+)-bornyl diphosphate synthase; terpene synthase 100.0
2j5c_A569 1,8-cineole synthase; terpene synthases, 1, monote 100.0
3sdr_A817 Alpha-bisabolene synthase; lyase, terpene synthase 100.0
3p5p_A764 Taxadiene synthase; class I and II terpene cyclase 100.0
3s9v_A785 Abietadiene synthase, chloroplastic; alpha bundle/ 100.0
3pya_A727 ENT-copalyl diphosphate synthase, chloroplastic; c 100.0
1ps1_A337 Pentalenene synthase; antibiotic biosynthesis, ses 100.0
1di1_A300 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3bny_A320 Aristolochene synthase; sesquiterpene cyclase, iso 100.0
3kb9_A382 EPI-isozizaene synthase; terpenoid cyclase, alpha- 100.0
3v1v_A433 2-MIB synthase, 2-methylisoborneol synthase; class 100.0
1yyq_A374 Trichodiene synthase; terpenoid cyclase fold, site 99.78
3sdr_A 817 Alpha-bisabolene synthase; lyase, terpene synthase 97.1
3lmd_A360 Geranylgeranyl pyrophosphate synthase; isoprenyl d 85.84
3ipi_A295 Geranyltranstransferase; isoprene biosynthesis, he 85.31
3acx_A293 Dehydrosqualene synthase; CRTM, carotenoid biosynt 82.52
4hd1_A294 Squalene synthase HPNC; MCSG, structural genomics, 82.16
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A* Back     alignment and structure
Probab=100.00  E-value=2.1e-168  Score=1372.14  Aligned_cols=537  Identities=55%  Similarity=0.954  Sum_probs=498.5

Q ss_pred             ccccccccCCCCCCCCCcccccccCchhhhchhHHHHHHHHHHHHHHHHhhc-cCCC-cchhHHHHHHHhCCccccHHHH
Q 044370           13 AKSQVMRRTANFHPSVWGDRFANYTAEDKMNHARDLKELKALKEEVGRKLLA-TAGP-IQLNLIDAIQRLGVGYHFEREL   90 (554)
Q Consensus        13 ~~~~~~r~~~~~~ps~w~~~~~~~~~~~~~~~~~~~~~~~~lk~~v~~~l~~-~~~~-~~l~liD~lqrLGi~~hF~~EI   90 (554)
                      ++.++.||+||||||+|||+||++ +.. ...+.+.+|+++||++||+||.+ ..|+ ++|+|||+||||||+|||++||
T Consensus        16 ~~~~~~R~~~~~~ps~W~~~fl~~-~~~-~~~~~~~~~~e~Lk~eVr~~l~~~~~~~~~~l~lID~lqrLGi~~hF~~EI   93 (554)
T 3g4d_A           16 SNKDEMRPKADFQPSIWGDLFLNC-PDK-NIDAETEKRHQQLKEEVRKMIVAPMANSTQKLAFIDSVQRLGVSYHFTKEI   93 (554)
T ss_dssp             ---------CCCCCCTTTTTTTSC-CC----CHHHHHHHHHHHHHHHHHHHSCCSSHHHHHHHHHHHHHTTCGGGCHHHH
T ss_pred             ccCCCCCCCCCCCccccccccccC-CCc-hhhHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHcCchhhhHHHH
Confidence            345568999999999999999997 422 33567899999999999999975 4688 9999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCchHHHHHHHHHhhhcCcccccccccceeccccccccccccchHHHHHHHhhhccCCCCchH
Q 044370           91 EQALQHLYNEKYSDDDTEDDLYRISLRFRLLRQHGYNVSCDKFNMFKDDKGNFKESLASDALGMLSLYEAAHLGVHGEDI  170 (554)
Q Consensus        91 ~~~L~~~~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vS~dvf~~F~d~~g~F~~~~~~d~~glL~LyeAs~l~~~gE~i  170 (554)
                      +++|++||++  + ..+..||++|||+|||||||||+||||||++|+|++|+|++++.+||+||||||||||+++|||+|
T Consensus        94 ~~~L~~i~~~--~-~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~l~~d~~glL~LYeAs~l~~~gE~i  170 (554)
T 3g4d_A           94 EDELENIYHN--N-NDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDI  170 (554)
T ss_dssp             HHHHHHHHHS--C-CCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHHHHHCHHHHHHHHHHHTTCCTTCHH
T ss_pred             HHHHHHHHhc--c-CCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccccccchHHHHHHHHHHhCCCCCcHH
Confidence            9999999986  1 223379999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhHhhcCCCcHHHHHHHHccCccccCcchhhHhhhHHhhcCCccccHHHHHHHhhhhhHHhhhhHHHH
Q 044370          171 LDEAIAFTTTHLKSVATHLSNPLKAQVRHALRQPLHRGLPRLEHRRYISIYQDDASHYKALLTLAKLDFNLVQSLHKKEL  250 (554)
Q Consensus       171 Ldea~~ft~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~~~rle~r~yI~~y~~~~~~n~~lLelAkldFn~~Q~~hq~El  250 (554)
                      ||||+.||++||++.++.++++|+++|+|||++|+|+++||+|||+||++|++++++|++||||||||||+||++||+||
T Consensus       171 LdeA~~fs~~~L~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El  250 (554)
T 3g4d_A          171 LDEAISFTTHHLSLAVASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDFNMLQFLHRKEL  250 (554)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSSTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccCchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcCccccHHHHHHHHHHHHHHHHHhHHHH
Confidence            99999999999999887778899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHhcC
Q 044370          251 CEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWD  330 (554)
Q Consensus       251 ~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~iiDD~~D~~gt~eEl~~ft~av~rWd  330 (554)
                      ++++|||+++||.++|||||||++|||||++|++|||+||.+|+++||++++++++||+||+|||+|||+.||+||+|||
T Consensus       251 ~~l~rWwk~~~l~~~L~faRdr~ve~yfw~~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygTleEl~~ft~ai~RWD  330 (554)
T 3g4d_A          251 SEICRWWKDLDFQRKLPYARDRVVEGYFWISGVYFEPQYSLGRKMLTKVIAMASIVDDTYDSYATYEELIPYTNAIERWD  330 (554)
T ss_dssp             HHHHHHHHHHCHHHHCTTCCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCcccCCchHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHhcC
Confidence            99999999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHhHhhcCCCCChHHHHhhhhhccch
Q 044370          331 ESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTSGY  410 (554)
Q Consensus       331 ~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EAkW~~~g~iPtleEYl~~r~iS~g~  410 (554)
                      ++++++||+|||+||.+++++++|++.++.++||+++++|++++|+++++||++||+|+++||+||+||||+||++|+|+
T Consensus       331 ~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~  410 (554)
T 3g4d_A          331 IKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGY  410 (554)
T ss_dssp             GGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHGGGSCH
T ss_pred             ccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHhccceeehH
Confidence            99999999999999999999999999988899999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCchhHHHHHHhCCCCHHHHHHHHHHH
Q 044370          411 TMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAASAVECYMKQHGLSEQEVCEELYRQ  490 (554)
Q Consensus       411 ~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~n~V~cyMke~g~S~EeA~~~i~~~  490 (554)
                      ++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+|+|+|+|+++++++
T Consensus       411 ~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG~van~V~cYMke~GvSeEeA~~~i~~~  490 (554)
T 3g4d_A          411 AMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGVTAQEAYDVFNKH  490 (554)
T ss_dssp             HHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC------CCCHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccCCccHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccCCCCCCCCchHHHHHHhhcccccCC
Q 044370          491 VSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEGDGYTHVGNEMKQNVAALLIDQVPI  554 (554)
Q Consensus       491 i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~pi~~  554 (554)
                      |+++||+||++|++++++|++|+++++|+||++++||+++||||.|+..||++|++||++|||+
T Consensus       491 Ie~~wK~lN~e~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~Dg~t~~~~~~k~~i~~ll~~Pi~l  554 (554)
T 3g4d_A          491 VESAWKDLNQEFLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVGKAAKGGITSLLIEPIAL  554 (554)
T ss_dssp             HHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHSCC-----CCCHHHHHHHHHHHTCCCCC
T ss_pred             HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHhcCCCCC
Confidence            9999999999999988999999999999999999999999999999878999999999999986
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A* Back     alignment and structure
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A* Back     alignment and structure
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A* Back     alignment and structure
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A* Back     alignment and structure
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa} Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A* Back     alignment and structure
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis} Back     alignment and structure
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A* Back     alignment and structure
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A Back     alignment and structure
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A Back     alignment and structure
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A* Back     alignment and structure
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* Back     alignment and structure
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Back     alignment and structure
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A Back     alignment and structure
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A* Back     alignment and structure
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Back     alignment and structure
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Back     alignment and structure
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... Back     alignment and structure
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d1n1ba2328 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synth 1e-155
d5easa2328 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase 1e-152
d5easa1197 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase 3e-73
d1n1ba1207 a.102.4.1 (A:64-270) (+)-bornyl diphosphate syntha 2e-66
d1ps1a_311 a.128.1.4 (A:) Pentalenene synthase {Streptomyces 8e-58
d1di1a_300 a.128.1.4 (A:) Aristolochene synthase {Fungus (Pen 2e-39
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 328 Back     information, alignment and structure

class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: (+)-bornyl diphosphate synthase
species: Garden sage (Salvia officinalis) [TaxId: 38868]

 Score =  444 bits (1144), Expect = e-155
 Identities = 107/325 (32%), Positives = 184/325 (56%), Gaps = 1/325 (0%)

Query: 229 KALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPN 288
             +  LAKL+FN++Q+ H++EL ++SRWW  L F  KLPF RDR+VE +FW +G++    
Sbjct: 3   PLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWAVGMFEPHQ 62

Query: 289 YSLARRILTKVIAMTSIIDDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGAL 348
           +   R++   +I + ++IDDIYDVYGT +EL+LFT+  +RWD  S+ +LP YMQ  +  +
Sbjct: 63  HGYQRKMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGV 122

Query: 349 LDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDESKWFHENYIPKMEEYMRVALVTS 408
            +  ++   +I  E   + +QY ++++  LVE Y+ E+KW+H  Y P ++EY+ +A ++ 
Sbjct: 123 HNYISDAAYDILKEHGFFCLQYLRKSVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISV 182

Query: 409 GYTMLTTVSFLGM-DNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAAS 467
               + + ++    +        D ++    I+  + II R  DD+ +  FE  RG    
Sbjct: 183 ASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPK 242

Query: 468 AVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVY 527
            ++CYMK+   SE+E  E +   +  AWKD+N         P  ++  A N+ RV   +Y
Sbjct: 243 TIQCYMKETNASEEEAVEHVKFLIREAWKDMNTAIAAGYPFPDGMVAGAANIGRVAQFIY 302

Query: 528 KEGDGYTHVGNEMKQNVAALLIDQV 552
             GDG+    ++  +++A LL +  
Sbjct: 303 LHGDGFGVQHSKTYEHIAGLLFEPY 327
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 328 Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 197 Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Length = 207 Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Length = 311 Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Length = 300 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d5easa2328 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba2328 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d5easa1197 5-Epi-aristolochene synthase {Tobacco (Nicotiana t 100.0
d1n1ba1207 (+)-bornyl diphosphate synthase {Garden sage (Salv 100.0
d1ps1a_311 Pentalenene synthase {Streptomyces sp., UC5319 [Ta 100.0
d1di1a_300 Aristolochene synthase {Fungus (Penicillium roquef 99.96
d1kiya_354 Trichodiene synthase {Fusarium sporotrichioides [T 99.45
d1ezfa_333 Squalene synthase {Human (Homo sapiens) [TaxId: 96 82.68
>d5easa2 a.128.1.3 (A:221-548) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
class: All alpha proteins
fold: Terpenoid synthases
superfamily: Terpenoid synthases
family: Terpenoid cyclase C-terminal domain
domain: 5-Epi-aristolochene synthase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=100.00  E-value=5.1e-98  Score=772.82  Aligned_cols=327  Identities=49%  Similarity=0.873  Sum_probs=311.4

Q ss_pred             ccHHHHHHHhhhhhHHhhhhHHHHHHHHHHHHHhCCCccchhhhhhhhhhhhhhhccccCCCchhHHHHHHHHHHHHHhh
Q 044370          227 HYKALLTLAKLDFNLVQSLHKKELCEISRWWKDLDFARKLPFARDRMVECYFWILGVYFEPNYSLARRILTKVIAMTSII  306 (554)
Q Consensus       227 ~n~~lLelAkldFn~~Q~~hq~El~~lsrWwk~~~l~~~l~faRdR~ve~yf~~~~~~feP~~s~~Rl~~aK~~~l~~ii  306 (554)
                      +|++||||||||||+||++||+||+.++|||+++|+.+++||||||++|||||++|++|||+||.+|+++||++++++++
T Consensus         1 ~N~~lLelAKlDFN~~Q~~hq~El~~l~rWw~~~~l~~~l~~aRdr~ve~Yfw~~~~~fEP~~s~~R~~~aK~~~l~ti~   80 (328)
T d5easa2           1 KNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWALGVYFEPQYSQARVMLVKTISMISIV   80 (328)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHHHHHCCSGGGHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhCCcccCCchHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999988999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCHHHHHHHHHHHHhcCCcccccCchhHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Q 044370          307 DDIYDVYGTPEELKLFTEVIERWDESSMDQLPEYMQTFFGALLDLYNEIEKEIANEGWSYRVQYAKEAMKILVEGYYDES  386 (554)
Q Consensus       307 DD~~D~~gt~eEl~~ft~av~rWd~~~~~~lpe~mk~~~~al~~~~~ei~~~~~~~~~~~~~~~~~~~w~~~~~a~l~EA  386 (554)
                      ||+||+|||+||++.||+||+|||.++++.||+|||+||.++++++++++.++.++||.+++++++++|++++++|++||
T Consensus        81 DD~yD~ygt~eEl~~ft~ai~rWd~~~~~~lp~ymk~~~~~l~~~~~e~~~~~~~~~~~~~~~~l~~~w~~~~~~~l~EA  160 (328)
T d5easa2          81 DDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEVVRNYNVES  160 (328)
T ss_dssp             HHHHHHTCCHHHHHHHHHHHHHTCSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhcccCCCHHHHHHHHHHHhcCCcchhhhCCchHHHHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998999999999999999999999


Q ss_pred             hHhhcCCCCChHHHHhhhhhccchhHHHHHHHHhcCCCCchhHHhhcccchHHHHHHHHHhHHccCccchhhHhhhCCCc
Q 044370          387 KWFHENYIPKMEEYMRVALVTSGYTMLTTVSFLGMDNIVTKETFDWVFSRPKIIRASEIIGRFMDDIKSHKFEQERGHAA  466 (554)
Q Consensus       387 kW~~~g~iPtleEYl~~r~iS~g~~~~~~~~~~~~g~~l~~ev~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~rG~v~  466 (554)
                      +|+++||+||+||||++|.+|+|+++++++++++||. ++++.++|++++|+|+++++.|+||+|||+|+++|+++|+++
T Consensus       161 ~W~~~g~vPt~eEYl~~~~~s~~~~~l~~~~~~~~g~-~~~e~~~~~~~~p~l~~~~~~i~RL~NDi~s~~~E~~rG~~~  239 (328)
T d5easa2         161 TWFIEGYTPPVSEYLSNALATTTYYYLATTSYLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIA  239 (328)
T ss_dssp             HHHHHTCCCCHHHHHHHHTGGGCHHHHHHHHHHTCTT-CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred             HHHhCCCCCChHhhhcceeeeehHHHHHHHHHHhCCC-CcHHHHHhcccchHHHHHHHHHHHHHhhhHHHHHHhccCCCC
Confidence            9999999999999999999999999999999999997 577889999999999999999999999999999999999999


Q ss_pred             hhHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCHHHHHHHHHHHhhhhhhcccC-CCCCCCCchHHHHHH
Q 044370          467 SAVECYMKQHGLSEQEVCEELYRQVSNAWKDINEECLNPTAVPMPLLMRALNLARVIDVVYKEG-DGYTHVGNEMKQNVA  545 (554)
Q Consensus       467 n~V~cyMke~g~S~EeA~~~i~~~i~~~~k~ln~e~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~  545 (554)
                      |+|+|||+|+|+|+|+|+++++++|+++||+||+++++++++|++|+++++|+||+++++|++| ||||+|++.+|++|+
T Consensus       240 s~I~cym~e~g~t~EeA~~~i~~~ie~~wk~ln~e~l~~~~~~~~~~~~~~n~ar~~~~~Y~~~~D~yt~~~~~~k~~i~  319 (328)
T d5easa2         240 TGIECCMRDYGISTKEAMAKFQNMAETAWKDINEGLLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTHPEKVLKPHII  319 (328)
T ss_dssp             CHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTSSSCSSCGGGTHHHHHHHHHHHHHTC-----------CCHHHHH
T ss_pred             eeEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCchHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999987 999999878999999


Q ss_pred             hhcccccCC
Q 044370          546 ALLIDQVPI  554 (554)
Q Consensus       546 ~ll~~pi~~  554 (554)
                      +||++||||
T Consensus       320 ~ll~epi~~  328 (328)
T d5easa2         320 NLLVDSIKI  328 (328)
T ss_dssp             HHHTCCCCC
T ss_pred             HHhccCCcC
Confidence            999999996
>d1n1ba2 a.128.1.3 (A:271-598) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d5easa1 a.102.4.1 (A:24-220) 5-Epi-aristolochene synthase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1n1ba1 a.102.4.1 (A:64-270) (+)-bornyl diphosphate synthase {Garden sage (Salvia officinalis) [TaxId: 38868]} Back     information, alignment and structure
>d1ps1a_ a.128.1.4 (A:) Pentalenene synthase {Streptomyces sp., UC5319 [TaxId: 1931]} Back     information, alignment and structure
>d1di1a_ a.128.1.4 (A:) Aristolochene synthase {Fungus (Penicillium roqueforti) [TaxId: 5082]} Back     information, alignment and structure
>d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} Back     information, alignment and structure
>d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure