Citrus Sinensis ID: 044385

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccHHHHcccccHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHEHHHHcccEEEEEcccccccccHHHHHHHcHHHHHHHHHHHHHHHcccEEcccEHHHHHHHHcccccccccEcc
Coil and Loop (DISEMBL)
MGSKTSASLALFLAVNILFFALVTacgscpspkpkpkpkptpspsgascprdalkLGVCANVLNGLlnvtigtppvqpcctLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVcsksvprgfqca
Flexible Loop (DISEMBL)
MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Low Complexity Region (SEG)
MGSKTSASLALFLAVNILFFALVTACGscpspkpkpkpkptpspsGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAnilginlniplslslllnVCSKSVPRGFQCA
Disordered region (IsUnstruct)
********LALFLAVNILFFALVTACGS************************ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKS********
Disordered Region (DISOPRED)
*****SASLALFLAVNILFFALVTACG************************DALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Disordered Region (DISEMBL)
MGSKTSASLALFLAVNILFFALVTACGS********************CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Disordered Region (DISPRO)
****TSASLALFLAVNILFFALVTACGSCPSPKPKPKP********ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
P14009	137	14 kDa proline-rich prote	N/A	no	0.992	0.956	0.602	7e-37
Q8RW93	128	Putative lipid-binding pr	no	no	0.818	0.843	0.539	3e-24
Q01595	129	Cortical cell-delineating	N/A	no	0.651	0.666	0.584	4e-20
Q00451	346	36.4 kDa proline-rich pro	N/A	no	0.636	0.242	0.488	1e-13
P24337	80	Hydrophobic seed protein	no	no	0.537	0.887	0.452	2e-07

>sp|P14009|14KD_DAUCA 14 kDa proline-rich protein DC2.15 OS=Daucus carota PE=2 SV=1

 Score =  152 bits (384), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 82/136 (60%), Positives = 98/136 (72%), Gaps = 5/136 (3%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSP-----SGASCPRDALK 55
           MGSK SAS+ALF  +NILFFALV++   CP P                 S   CPRDALK
Sbjct: 1   MGSKNSASVALFFTLNILFFALVSSTEKCPDPYKPKPKPTPKPTPTPYPSAGKCPRDALK 60

Query: 56  LGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLS 115
           LGVCA+VLN + NV IG+PP  PCC+L++GL +LEAAVCLCTAIKANILG NLN+P++LS
Sbjct: 61  LGVCADVLNLVHNVVIGSPPTLPCCSLLEGLVNLEAAVCLCTAIKANILGKNLNLPIALS 120

Query: 116 LLLNVCSKSVPRGFQC 131
           L+LN C K VP GF+C
Sbjct: 121 LVLNNCGKQVPNGFEC 136

May be connected with the initiation of embryogenesis or with the metabolic changes produced by the removal of auxins.
Daucus carota (taxid: 4039)

>sp|Q8RW93|LBP65_ARATH Putative lipid-binding protein At4g00165 OS=Arabidopsis thaliana GN=At4g00165 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 62/115 (53%), Positives = 77/115 (66%), Gaps = 7/115 (6%)

Query: 18  LFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCANVLNGLLNVTIGTPPVQ 77
            FF  VT     P    KP P P    +   CPRD LK GVC + L GL++  IGTPP Q
Sbjct: 20  FFFGHVT-----PGATVKPCPPPPAKQATTKCPRDTLKFGVCGSWL-GLVSEVIGTPPSQ 73

Query: 78  PCCTLIQGLADLEAAVCLCTAIKANILGIN-LNIPLSLSLLLNVCSKSVPRGFQC 131
            CC+LI+GLAD EAAVCLCTA+K +ILG+  + IP++L+LLLN C K+VP+GF C
Sbjct: 74  ECCSLIKGLADFEAAVCLCTALKTSILGVAPVKIPVALTLLLNSCGKNVPQGFVC 128

Arabidopsis thaliana (taxid: 3702)

>sp|Q01595|CCDP_MAIZE Cortical cell-delineating protein OS=Zea mays PE=2 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 64/89 (71%), Gaps = 3/89 (3%)

Query: 43  SPSGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAN 102
           S S   CP DALKL VCA VL GL  V +G P  + CC L++GL DL+AA+CLCTAIKAN
Sbjct: 42  SHSHGRCPIDALKLKVCAKVL-GL--VKVGLPQYEQCCPLLEGLVDLDAALCLCTAIKAN 98

Query: 103 ILGINLNIPLSLSLLLNVCSKSVPRGFQC 131
           +LGI+LN+PLSL+ +LN C +  P  F C
Sbjct: 99  VLGIHLNVPLSLNFILNNCGRICPEDFTC 127

Delineates a novel subset of developing cortical cells. It is probably involved in some aspect of transport of molecules to or from the vasculature.

Zea mays (taxid: 4577)

>sp|Q00451|PRF1_SOLLC 36.4 kDa proline-rich protein OS=Solanum lycopersicum GN=TPRP-F1 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/84 (48%), Positives = 60/84 (71%)

Query: 48  SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGIN 107
           +CP DALKLG C +VL GL+++ IG    Q CC L+ GL DL+AA+CLCT I+  +L IN
Sbjct: 260 TCPIDALKLGACVDVLGGLIHIGIGGSAKQTCCPLLGGLVDLDAAICLCTTIRLKLLNIN 319

Query: 108 LNIPLSLSLLLNVCSKSVPRGFQC 131
           + +P++L +L++ C K  P+ F+C
Sbjct: 320 IILPIALQVLIDDCGKYPPKDFKC 343

Solanum lycopersicum (taxid: 4081)

>sp|P24337|HPSE_SOYBN Hydrophobic seed protein OS=Glycine max PE=1 SV=1

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/84 (45%), Positives = 49/84 (58%), Gaps = 13/84 (15%)

Query: 48  SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGIN 107
           SCP     L +C N+L G    ++GT  V  CC LI GL D+EA VCLC  ++A  LGI 
Sbjct: 7   SCP----DLSICLNILGG----SLGT--VDDCCALIGGLGDIEAIVCLCIQLRA--LGI- 53

Query: 108 LNIPLSLSLLLNVCSKSVPRGFQC 131
           LN+  +L L+LN C +S P    C
Sbjct: 54  LNLNRNLQLILNSCGRSYPSNATC 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
21360370	143	extensin-like protein [Citrus junos]	0.954	0.881	0.984	4e-60
356514232	172	PREDICTED: 14 kDa proline-rich protein D	1.0	0.767	0.622	1e-45
255642344	172	unknown [Glycine max]	1.0	0.767	0.616	4e-45
110816009	137	HyPRP2 [Gossypium hirsutum]	0.992	0.956	0.816	2e-44
357476925	169	14 kDa proline-rich protein DC2.15 [Medi	0.992	0.775	0.607	5e-44
351724379	170	uncharacterized protein LOC100499716 pre	1.0	0.776	0.617	4e-43
21693573	179	extensin-like protein [Glycine max]	1.0	0.737	0.586	1e-42
4103618	156	HyPRP [Fragaria x ananassa] gi|45758393|	1.0	0.846	0.634	2e-42
224137832	132	predicted protein [Populus trichocarpa]	1.0	1.0	0.780	4e-41
351726576	135	uncharacterized protein LOC100527818 pre	0.977	0.955	0.641	5e-40

>gi|21360370|gb|AAM47507.1| extensin-like protein [Citrus junos]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 124/126 (98%), Positives = 124/126 (98%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCA 60
           MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCA
Sbjct: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCA 60

Query: 61  NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNV 120
           NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNV
Sbjct: 61  NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNV 120

Query: 121 CSKSVP 126
           CSK  P
Sbjct: 121 CSKGCP 126

Source: Citrus junos

Species: Citrus junos

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356514232|ref|XP_003525810.1| PREDICTED: 14 kDa proline-rich protein DC2.15-like [Glycine max]

 Score =  187 bits (476), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 107/172 (62%), Positives = 120/172 (69%), Gaps = 40/172 (23%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPT-PSPSG------------- 46
           MGSKT +SLA+FL VNILFFALV+ACG+CPSP P+ K KP  PSPSG             
Sbjct: 1   MGSKTRSSLAIFLTVNILFFALVSACGTCPSPTPRHKHKPVKPSPSGGSGGSGGSGGSGG 60

Query: 47  --------------------------ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCC 80
                                     ASCPRDALKLGVCANVLNGLLNVT+G PPV PCC
Sbjct: 61  SGGSGGSGGSGGSGGSGGSGGSGGSGASCPRDALKLGVCANVLNGLLNVTLGQPPVTPCC 120

Query: 81  TLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA 132
           +L+ GL DLEAAVCLCTA+KANILGINLN+P+SLSLLLNVCS++ PR FQCA
Sbjct: 121 SLLNGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSRNAPRDFQCA 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255642344|gb|ACU21436.1| unknown [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 106/172 (61%), Positives = 119/172 (69%), Gaps = 40/172 (23%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPT-PSPSG------------- 46
           MGSKT +SLA+FL VNILFFAL +ACG+CPSP P+ K KP  PSPSG             
Sbjct: 1   MGSKTRSSLAIFLTVNILFFALASACGTCPSPTPRHKHKPVKPSPSGGSGGSGGSGGSGG 60

Query: 47  --------------------------ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCC 80
                                     ASCPRDALKLGVCANVLNGLLNVT+G PPV PCC
Sbjct: 61  SGGSGGSGGSGGSGGSGGSGGSGGSGASCPRDALKLGVCANVLNGLLNVTLGQPPVTPCC 120

Query: 81  TLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA 132
           +L+ GL DLEAAVCLCTA+KANILGINLN+P+SLSLLLNVCS++ PR FQCA
Sbjct: 121 SLLNGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSRNAPRDFQCA 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110816009|gb|ABG91752.1| HyPRP2 [Gossypium hirsutum]

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 121/136 (88%), Gaps = 5/136 (3%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSG-----ASCPRDALK 55
           MGSK +ASLALF A+NILFF+LV+ACGSCPSP PKPKPKP P+P+        CPRDALK
Sbjct: 1   MGSKRTASLALFFALNILFFSLVSACGSCPSPNPKPKPKPKPNPTPSPSSSGKCPRDALK 60

Query: 56  LGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLS 115
           LGVCA++L GLLNVTIGTPPVQPCC+LIQGLADLEAAVCLCTAIKANILGINLN+PLSLS
Sbjct: 61  LGVCADLLGGLLNVTIGTPPVQPCCSLIQGLADLEAAVCLCTAIKANILGINLNVPLSLS 120

Query: 116 LLLNVCSKSVPRGFQC 131
           LLLNVCSK VP GFQC
Sbjct: 121 LLLNVCSKKVPSGFQC 136

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357476925|ref|XP_003608748.1| 14 kDa proline-rich protein DC2.15 [Medicago truncatula] gi|355509803|gb|AES90945.1| 14 kDa proline-rich protein DC2.15 [Medicago truncatula] gi|388493086|gb|AFK34609.1| unknown [Medicago truncatula]

 Score =  182 bits (461), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 114/168 (67%), Gaps = 37/168 (22%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPS-PKPKPKPKPTPSPSG------------- 46
           M SKT +SLA+FL +NILFF LV++CG+C S P P PKPK  PSP+              
Sbjct: 1   MASKTCSSLAIFLTINILFFTLVSSCGTCGSGPNPNPKPKHKPSPNHSGGSSHSGGSSPY 60

Query: 47  -----------------------ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLI 83
                                  ASCPRDALKLGVCANVLNGLLNVT+G PPV PCCTL+
Sbjct: 61  GGSTPSGGSSPSGGSSPSGGSGTASCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCTLL 120

Query: 84  QGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQC 131
            GL DLEAAVCLCTA+KANILGINLN+P+SLSLLLNVCSK  PR FQC
Sbjct: 121 NGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSKQAPRDFQC 168

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724379|ref|NP_001235008.1| uncharacterized protein LOC100499716 precursor [Glycine max] gi|255626023|gb|ACU13356.1| unknown [Glycine max]

 Score =  179 bits (453), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 105/170 (61%), Positives = 116/170 (68%), Gaps = 38/170 (22%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKP-KPKPT-PSPSG------------ 46
           MGSKT   LALFL +NILFFAL +ACG CPSPKP+  K KP  PSPSG            
Sbjct: 1   MGSKTRPFLALFLTINILFFALASACGICPSPKPRHNKHKPVKPSPSGGSGGSGGSGGSG 60

Query: 47  ------------------------ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTL 82
                                    SCPRDALKLGVCANVLNGLLNVT+G PPV PCC+L
Sbjct: 61  GSGGSGGSSGSGGSGGSGGSGGSSTSCPRDALKLGVCANVLNGLLNVTLGQPPVTPCCSL 120

Query: 83  IQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA 132
           + GL DLEAAVCLCTA++ANILGINLN+P+SLSLLLNVCS+ VPR FQCA
Sbjct: 121 LNGLVDLEAAVCLCTALRANILGINLNLPISLSLLLNVCSRQVPRDFQCA 170

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21693573|gb|AAM75351.1|AF520576_1 extensin-like protein [Glycine max]

 Score =  177 bits (450), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 105/179 (58%), Positives = 118/179 (65%), Gaps = 47/179 (26%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKP-KPKPT-PSPSG------------ 46
           MGSKT + LALFL +NILFFAL +ACG+CPSPKP+  K KP  PSPSG            
Sbjct: 1   MGSKTRSFLALFLTINILFFALASACGTCPSPKPRHNKHKPVKPSPSGGSGGSGGSGGSG 60

Query: 47  ---------------------------------ASCPRDALKLGVCANVLNGLLNVTIGT 73
                                             SCPRDALKLGVCANVLNGLLNVT+G 
Sbjct: 61  GSGGSGGSGGSGGSGGSGGSGGSGGSGGSGGSSTSCPRDALKLGVCANVLNGLLNVTLGQ 120

Query: 74  PPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA 132
           PPV PCC+L+ GL DLEAAVCLCTA+KANILGINLN+P+SLSLLLNVCS++ PR FQCA
Sbjct: 121 PPVTPCCSLLNGLVDLEAAVCLCTALKANILGINLNLPISLSLLLNVCSRNAPRDFQCA 179

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4103618|gb|AAD01800.1| HyPRP [Fragaria x ananassa] gi|45758393|gb|AAS76505.1| HyPRP [Fragaria x ananassa]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 113/156 (72%), Gaps = 24/156 (15%)

Query: 1   MGSKTSASLALFLAVNILFFALV-TACGSC----------------------PSPKPKPK 37
           M S+++ASLALFL VN+LFF +V  AC +C                      PSP     
Sbjct: 1   MASRSTASLALFLVVNLLFFTMVANACNTCPRPKPKPRPRPRPTPSPGTPSTPSPGTPST 60

Query: 38  PKPTPSPSG-ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLC 96
           P    +PSG A+CPRDALKLG+CANVLN LLNVTIGTPPVQPCCTLIQGLADLEAAVCLC
Sbjct: 61  PGTPSTPSGTATCPRDALKLGICANVLNNLLNVTIGTPPVQPCCTLIQGLADLEAAVCLC 120

Query: 97  TAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQCA 132
           TAI+A+ILGINLNIP++LSLLLN C   VPRGFQC+
Sbjct: 121 TAIRASILGINLNIPIALSLLLNACGNQVPRGFQCS 156

Source: Fragaria x ananassa

Species: Fragaria x ananassa

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137832|ref|XP_002326451.1| predicted protein [Populus trichocarpa] gi|222833773|gb|EEE72250.1| predicted protein [Populus trichocarpa]

 Score =  172 bits (436), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 103/132 (78%), Positives = 115/132 (87%)

Query: 1   MGSKTSASLALFLAVNILFFALVTACGSCPSPKPKPKPKPTPSPSGASCPRDALKLGVCA 60
           M SK++ SLALFLAVN+LFF+LVTA  S   P PKPKP PTPSPSG  CP+DALKLGVCA
Sbjct: 1   MASKSTTSLALFLAVNLLFFSLVTAKRSSCPPPPKPKPTPTPSPSGGKCPKDALKLGVCA 60

Query: 61  NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNV 120
           ++L  LLNVT+GTPPV+PCC+LIQGL DLEAAVCLCTAIKANILGINLNIP+SLSLLLNV
Sbjct: 61  DLLGSLLNVTVGTPPVEPCCSLIQGLLDLEAAVCLCTAIKANILGINLNIPVSLSLLLNV 120

Query: 121 CSKSVPRGFQCA 132
           C K VP+ FQCA
Sbjct: 121 CGKKVPKDFQCA 132

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726576|ref|NP_001237899.1| uncharacterized protein LOC100527818 precursor [Glycine max] gi|255633300|gb|ACU17007.1| unknown [Glycine max]

 Score =  169 bits (427), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 84/131 (64%), Positives = 101/131 (77%), Gaps = 2/131 (1%)

Query: 3   SKTSASLALFLAVNILFFALVTACGSC--PSPKPKPKPKPTPSPSGASCPRDALKLGVCA 60
           S+TS +LALFL +N+LFF + + C +C  P P P P P P PSP+  SCPRDALKLGVCA
Sbjct: 4   SRTSTTLALFLTINLLFFVMASGCYTCTQPKPNPIPFPYPNPSPAAKSCPRDALKLGVCA 63

Query: 61  NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNV 120
           NVLNG +   +G+PP  PCC++++GL DLE AVCLCTAIKANILGINLNIP+SLSL+LN 
Sbjct: 64  NVLNGPIGAIVGSPPDHPCCSVLEGLLDLEVAVCLCTAIKANILGINLNIPISLSLILNA 123

Query: 121 CSKSVPRGFQC 131
           C KS P  F C
Sbjct: 124 CEKSPPSDFLC 134

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
TAIR|locus:2203886	149	AT1G62510 [Arabidopsis thalian	0.643	0.570	0.705	9.2e-36
TAIR|locus:2135545	129	AT4G12510 [Arabidopsis thalian	0.977	1.0	0.507	2.7e-29
TAIR|locus:2135555	129	AT4G12520 [Arabidopsis thalian	0.977	1.0	0.507	2.7e-29
TAIR|locus:2008880	137	ELP "extensin-like protein" [A	0.954	0.919	0.503	2.7e-29
TAIR|locus:2135610	168	EARLI1 "EARLY ARABIDOPSIS ALUM	0.643	0.505	0.541	3.7e-29
TAIR|locus:2135635	177	AT4G12500 [Arabidopsis thalian	0.643	0.480	0.541	7.6e-29
TAIR|locus:2135595	161	AZI1 "azelaic acid induced 1"	0.659	0.540	0.528	1.6e-28
TAIR|locus:2135625	182	AT4G12490 [Arabidopsis thalian	0.643	0.467	0.552	2e-28
TAIR|locus:2050901	134	AT2G45180 [Arabidopsis thalian	0.992	0.977	0.444	8.7e-24
TAIR|locus:2135600	111	AIR1 "Auxin-Induced in Root cu	0.636	0.756	0.5	1.6e-23

TAIR|locus:2203886 AT1G62510 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 9.2e-36, Sum P(2) = 9.2e-36
 Identities = 60/85 (70%), Positives = 63/85 (74%)

Query:    47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXX 106
             A CPRDALKLGVCANVLNGLLNVT+G PPV+PCCTLIQGLADLEAA CLCTA+KA     
Sbjct:    65 AKCPRDALKLGVCANVLNGLLNVTLGKPPVEPCCTLIQGLADLEAAACLCTALKANILGI 124

Query:   107 XXXXXXXXXXXXXVCSKSVPRGFQC 131
                          VCSK VPRGFQC
Sbjct:   125 NLNIPLSLSLLLNVCSKKVPRGFQC 149

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135545 AT4G12510 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 67/132 (50%), Positives = 75/132 (56%)

Query:     1 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGASCPRDALKLGVCA 60
             M SK SASL +FL  NILFF L TACG                    SCP+D LKLGVCA
Sbjct:     1 MASKISASLVIFLTFNILFFTLTTACGGGCSSTPKPKPKPKST---GSCPKDTLKLGVCA 57

Query:    61 NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXV 120
             NVL  LL + +GTPPV+PCC+L+ GL DLEAA CLCTA+KA                  V
Sbjct:    58 NVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGINLNVPVSLSLLLNV 117

Query:   121 CSKSVPRGFQCA 132
             C K VP GF CA
Sbjct:   118 CGKKVPSGFVCA 129

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135555 AT4G12520 [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 67/132 (50%), Positives = 75/132 (56%)

Query:     1 MGSKTSASLALFLAVNILFFALVTACGXXXXXXXXXXXXXXXXXXGASCPRDALKLGVCA 60
             M SK SASL +FL  NILFF L TACG                    SCP+D LKLGVCA
Sbjct:     1 MASKISASLVIFLTFNILFFTLTTACGGGCSSTPKPKPKPKST---GSCPKDTLKLGVCA 57

Query:    61 NVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXXXXV 120
             NVL  LL + +GTPPV+PCC+L+ GL DLEAA CLCTA+KA                  V
Sbjct:    58 NVLKDLLKIQLGTPPVKPCCSLLNGLVDLEAAACLCTALKAKVLGINLNVPVSLSLLLNV 117

Query:   121 CSKSVPRGFQCA 132
             C K VP GF CA
Sbjct:   118 CGKKVPSGFVCA 129

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2008880 ELP "extensin-like protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 68/135 (50%), Positives = 84/135 (62%)

Query:     6 SASLALFLAVNILFFALVTACGXXXXXXXX--------XXXXXXXXXXGAS-CPRDALKL 56
             S+S+ALFLA+N+LFF  ++ACG                          G+S CP+D LKL
Sbjct:     3 SSSIALFLALNLLFFTTISACGSCTPCGGGCPSPKPKPTPKPTPSPSSGSSKCPKDTLKL 62

Query:    57 GVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXX 116
             GVCANVLNGLL++T+G PPV+PCC+LIQGLAD+EAAVCLCTA+KA               
Sbjct:    63 GVCANVLNGLLDLTLGKPPVEPCCSLIQGLADVEAAVCLCTALKANILGINLNLPISLSL 122

Query:   117 XXXVCSKSVPRGFQC 131
                VCSK +P GFQC
Sbjct:   123 LLNVCSKQLPPGFQC 137

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2135610 EARLI1 "EARLY ARABIDOPSIS ALUMINUM INDUCED 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 256 (95.2 bits), Expect = 3.7e-29, Sum P(2) = 3.7e-29
 Identities = 46/85 (54%), Positives = 58/85 (68%)

Query:    48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXX 107
             +CP DAL+LGVCANVL+ LLN+ +G P  QPCC+LIQGL DL+AA+CLCTA++A      
Sbjct:    84 NCPIDALRLGVCANVLSSLLNIQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGIN 143

Query:   108 XXXXXXXXXXXXVCSKSVPRGFQCA 132
                         VC++ VP GFQCA
Sbjct:   144 LNVPISLSVLLNVCNRKVPSGFQCA 168

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009409 "response to cold" evidence=RCA;IMP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135635 AT4G12500 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 46/85 (54%), Positives = 58/85 (68%)

Query:    48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXX 107
             +CP DAL+LGVCANVL+GLLNV +G P  QPCC+LIQGL DL+AA+CLCTA++A      
Sbjct:    93 NCPIDALRLGVCANVLSGLLNVQLGQPSAQPCCSLIQGLVDLDAAICLCTALRANVLGIN 152

Query:   108 XXXXXXXXXXXXVCSKSVPRGFQCA 132
                         VC++ +P  FQCA
Sbjct:   153 LNVPISLSVLLNVCNRRLPSDFQCA 177

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

TAIR|locus:2135595 AZI1 "azelaic acid induced 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.6e-28, Sum P(2) = 1.6e-28
 Identities = 46/87 (52%), Positives = 58/87 (66%)

Query:    46 GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXX 105
             G SCP DALKLGVCANVL+ LLN+ +G P  Q CC+LIQGL D++AA+CLCTA++A    
Sbjct:    75 GNSCPIDALKLGVCANVLSSLLNIQLGQPSSQQCCSLIQGLVDVDAAICLCTALRANVLG 134

Query:   106 XXXXXXXXXXXXXXVCSKSVPRGFQCA 132
                           VC++ +P GFQCA
Sbjct:   135 INLNVPISLSVLLNVCNRKLPSGFQCA 161

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:0009627 "systemic acquired resistance" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

TAIR|locus:2135625 AT4G12490 [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 47/85 (55%), Positives = 58/85 (68%)

Query:    48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXX 107
             +CP DAL+LGVCANVL+GLLNV +G P  QPCC+LIQGL DL+AAVCLCTA++A      
Sbjct:    98 NCPIDALRLGVCANVLSGLLNVQLGQPSPQPCCSLIQGLVDLDAAVCLCTALRANVLGIN 157

Query:   108 XXXXXXXXXXXXVCSKSVPRGFQCA 132
                         VC++ +P  FQCA
Sbjct:   158 LNVPISLSVLLNVCNRRLPSNFQCA 182

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2050901 AT2G45180 [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 60/135 (44%), Positives = 74/135 (54%)

Query:     1 MGSKTSASLALFLAVNILFFALVTA--CGXXXXXXXXXXXXXXXX-XXGASCPRDALKLG 57
             M SK  A  AL + +N+LFF  VT+  C                      +CP D LKLG
Sbjct:     1 MASKALAVTALLITLNLLFFTFVTSTKCPPTTPKPPKTPKSPKKAPAVKPTCPTDTLKLG 60

Query:    58 VCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXXXXXXXXXXXX 117
             VCA++L GL+NV +G+PP  PCCTL+QGLA+LEAAVCLCTA+KA                
Sbjct:    61 VCADLL-GLVNVVVGSPPKTPCCTLLQGLANLEAAVCLCTALKANVLGINLNVPIDLTLL 119

Query:   118 XXVCSKSVPRGFQCA 132
                C K VP GFQC+
Sbjct:   120 LNYCGKKVPHGFQCS 134

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0000038 "very long-chain fatty acid metabolic process" evidence=RCA

GO:0042335 "cuticle development" evidence=RCA

TAIR|locus:2135600 AIR1 "Auxin-Induced in Root cultures 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 1.6e-23, Sum P(2) = 1.6e-23
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query:    48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKAXXXXXX 107
             +CP++++++G C  VLN L+++T+G PPV+PCC+LIQGLADLEAAVCLCTA+KA      
Sbjct:    27 TCPKNSIEIGTCVTVLN-LVDLTLGNPPVKPCCSLIQGLADLEAAVCLCTAVKASILGIV 85

Query:   108 XXXX-XXXXXXXXVCSKSVPRGFQCA 132
                          VCS++ P+ FQCA
Sbjct:    86 NINLPINLSVLLNVCSRNAPKSFQCA 111

GO:0005576 "extracellular region" evidence=ISM

GO:0006869 "lipid transport" evidence=IEA;ISS

GO:0008289 "lipid binding" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0010102 "lateral root morphogenesis" evidence=IEP

GO:0009653 "anatomical structure morphogenesis" evidence=RCA

GO:0048364 "root development" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

GO:0048589 "developmental growth" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0048869 "cellular developmental process" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P14009	14KD_DAUCA	No assigned EC number	0.6029	0.9924	0.9562	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0029004201 hypothetical protein (132 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	132
cd01958	85	cd01958, HPS_like, HPS_like: Hydrophobic Protein f	2e-33
pfam00234	74	pfam00234, Tryp_alpha_amyl, Protease inhibitor/see	5e-15
smart00499	79	smart00499, AAI, Plant lipid transfer protein / se	2e-05

>gnl|CDD|238924 cd01958, HPS_like, HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

 Score =  111 bits (280), Expect = 2e-33
 Identities = 64/86 (74%), Positives = 74/86 (86%), Gaps = 1/86 (1%)

Query: 46  GASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILG 105
           G +CPRDALKLGVCANVL GL  + +GTP VQPCC LI GLADL+AAVCLCTAIKANILG
Sbjct: 1   GPTCPRDALKLGVCANVL-GLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG 59

Query: 106 INLNIPLSLSLLLNVCSKSVPRGFQC 131
           I++NIP++LSLLLN C ++VP GF C
Sbjct: 60  ISINIPVALSLLLNSCGRNVPPGFTC 85

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset of cortical cells. Length = 85

>gnl|CDD|215810 pfam00234, Tryp_alpha_amyl, Protease inhibitor/seed storage/LTP family

 Score = 64.5 bits (157), Expect = 5e-15
 Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 9/83 (10%)

Query: 49  CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINL 108
           C +  LKL  CA  L G   V     P Q CC+ ++ L     A C CTAI+A +LGI  
Sbjct: 1   CGQVLLKLAPCAGYLQGGCQV-----PSQQCCSQLRQLQ----AQCRCTAIRAIVLGIEG 51

Query: 109 NIPLSLSLLLNVCSKSVPRGFQC 131
             P + + L ++C  +VP G  C
Sbjct: 52  INPQAAASLPSMCGVNVPYGIDC 74

This family is composed of trypsin-alpha amylase inhibitors, seed storage proteins and lipid transfer proteins from plants. Length = 74

>gnl|CDD|214698 smart00499, AAI, Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 25/81 (30%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 49  CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINL 108
           C +  L+L  C + L G    + G PP Q CC     L  L +A C C A++A +LGI  
Sbjct: 1   CGQVLLQLAPCLSYLVG---GSRGAPPSQQCC---SQLRGLNSAQCRCLALRAAVLGILE 54

Query: 109 N---IPLSLSLLLNVCSKSVP 126
                  + + L + C    P
Sbjct: 55  IPGLNAQNAASLPSACGVPPP 75

Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
PF14547	85	Hydrophob_seed: Hydrophobic seed protein	100.0
cd01958	85	HPS_like HPS_like: Hydrophobic Protein from Soybea	100.0
smart00499	79	AAI Plant lipid transfer protein / seed storage pr	96.73
PF14368	96	LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A	96.55
cd01959	66	nsLTP2 nsLTP2: Non-specific lipid-transfer protein	95.88
cd04660	73	nsLTP_like nsLTP_like: Non-specific lipid-transfer	95.63
PF07172	95	GRP: Glycine rich protein family; InterPro: IPR010	94.36
PF00234	90	Tryp_alpha_amyl: Protease inhibitor/seed storage/L	93.2
cd00010	63	AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI),	92.75
cd01960	89	nsLTP1 nsLTP1: Non-specific lipid-transfer protein	87.47

>PF14547 Hydrophob_seed: Hydrophobic seed protein

Probab=100.00  E-value=3.5e-36  Score=211.92  Aligned_cols=84  Identities=76%  Similarity=1.413  Sum_probs=82.2

Q ss_pred             CCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhccc-ceecccchhhhhhhhcCCCCC
Q 044385           48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILG-INLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        48 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlg-i~~~ipv~l~~lln~CGk~~P  126 (132)
                      +||+|++||++|+||| |++++.+|.+++++||++|+||+|+|||+|||+|+|+|++| |++|+|+++++++|.|||++|
T Consensus         1 ~CP~d~lkLgvC~~vL-~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p   79 (85)
T PF14547_consen    1 TCPRDALKLGVCANVL-GLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVP   79 (85)
T ss_pred             CCCCcchhhhhhhhhh-hhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCc
Confidence            6999999999999999 59999999999999999999999999999999999999999 899999999999999999999


Q ss_pred             CCCccC
Q 044385          127 RGFQCA  132 (132)
Q Consensus       127 ~gf~C~  132 (132)
                      +||+|+
T Consensus        80 ~gf~C~   85 (85)
T PF14547_consen   80 SGFTCP   85 (85)
T ss_pred             CCCcCC
Confidence            999996

>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins

Probab=100.00  E-value=3.9e-37  Score=216.93  Aligned_cols=84  Identities=74%  Similarity=1.318  Sum_probs=82.0

Q ss_pred             CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385           47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P  126 (132)
                      ++||+|++||++|+|||+ +++..+|+++.++||++|+||+|+|||+|||||||+|++||++|+|+++++++|.|||++|
T Consensus         2 ~~CP~dalkLgvCanvL~-l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lgi~~~~pv~l~llln~CGk~~P   80 (85)
T cd01958           2 PTCPRDALKLGVCANVLG-LSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILGISINIPVALSLLLNSCGRNVP   80 (85)
T ss_pred             CCCCcchHHhchhHhhhh-ccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccCcccccChhHHHHHHHHcCcCC
Confidence            589999999999999996 8899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcc
Q 044385          127 RGFQC  131 (132)
Q Consensus       127 ~gf~C  131 (132)
                      +||+|
T Consensus        81 ~gf~C   85 (85)
T cd01958          81 PGFTC   85 (85)
T ss_pred             CCCcC
Confidence            99998

In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset

>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family

Probab=96.73  E-value=0.00042  Score=44.53  Aligned_cols=74  Identities=35%  Similarity=0.674  Sum_probs=50.5

Q ss_pred             CcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhccccee----cccchhhhhhhhcCCCC
Q 044385           50 PRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINL----NIPLSLSLLLNVCSKSV  125 (132)
Q Consensus        50 P~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~----~ipv~l~~lln~CGk~~  125 (132)
                      .....++..|.+.+.+..   ....+.++||..++++.   ...|+|.+++....++..    + ......|.+.||...
T Consensus         2 ~~~~~~~~~c~~~~~~~~---~~~~p~~~CC~~l~~~~---~~~C~C~~~~~~~~~~~~~~~~~-~~~a~~lp~~C~~~~   74 (79)
T smart00499        2 GQVLLQLAPCLSYLTGGS---PGAPPSQQCCSQLRGLN---SAQCRCLALRAAVLGILEIPGVN-AQNAASLPSACGVPP   74 (79)
T ss_pred             hhhhhhHHhhHHHHcCCC---CCCCCchHHHHHHHHhc---ccCCcchhhhcccccccchhhhh-HHHHHhhHHhcCCCC
Confidence            334445557777764211   12456688999999887   677999999988766532    3 344557889999998


Q ss_pred             CCCCcc
Q 044385          126 PRGFQC  131 (132)
Q Consensus       126 P~gf~C  131 (132)
                      |. +.|
T Consensus        75 ~~-~~C   79 (79)
T smart00499       75 PY-TDC   79 (79)
T ss_pred             CC-CCC
Confidence            75 554

>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A

Probab=96.55  E-value=0.00016  Score=49.41  Aligned_cols=57  Identities=26%  Similarity=0.697  Sum_probs=34.5

Q ss_pred             CCCCCCCCCccccccccchhhhHHHHHhhhhc-ccceecccchhhhhhhhcCCCCCCCCcc
Q 044385           72 GTPPVQPCCTLIQGLADLEAAVCLCTAIKANI-LGINLNIPLSLSLLLNVCSKSVPRGFQC  131 (132)
Q Consensus        72 g~p~~~~CC~li~gL~d~dAa~CLC~aika~v-lgi~~~ipv~l~~lln~CGk~~P~gf~C  131 (132)
                      +..|.++||..++.+.+.| ..|||..++... .++++|..-.+ .|...||...|. ++|
T Consensus        39 ~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~in~~~a~-~Lp~~Cg~~~~~-~~C   96 (96)
T PF14368_consen   39 GPAPSAACCSALKSVVQAD-PPCLCQLLNSPGAPGFGINVTRAL-ALPAACGVPVPP-SKC   96 (96)
T ss_dssp             -----HHHHHHHCC----H-CCHHHCCCC-CCHCHHCCTCHHHH-HHHHHCTSS-S-----
T ss_pred             CCCCCHHHHHHHHHhccCC-CCCHHHhcCccccccCCcCHHHHH-HHHHHcCCCCCC-CCC
Confidence            3567788999999997744 899999999987 55566655544 678999999998 887

>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=95.88  E-value=0.00098  Score=44.76  Aligned_cols=62  Identities=27%  Similarity=0.568  Sum_probs=46.5

Q ss_pred             ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCC
Q 044385           54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPR  127 (132)
Q Consensus        54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~  127 (132)
                      .+|..|...+.      .|.+|.++||..++.     +-.|||.-+|...++.-+|.+-+. -|.+.||..+|.
T Consensus         4 ~~L~~C~~ai~------~~~~Ps~~CC~~Lk~-----~~~CLC~y~~~p~l~~~i~~~~A~-~l~~~Cgv~~P~   65 (66)
T cd01959           4 TQLSPCLPAIL------GGSPPSAACCAKLKE-----QQSCLCQYAKNPSLKQYVNSPNAR-KVLAACGVPYPN   65 (66)
T ss_pred             hhcccCHHHHh------CCCCCCHHHHHHHhc-----CCCCeeeeecCccHHhhcCcHHHH-HHHHHcCCCCCC
Confidence            47888988753      256888899999996     237999999876666446666655 578899999864

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp

>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3

Probab=95.63  E-value=0.002  Score=43.27  Aligned_cols=68  Identities=24%  Similarity=0.512  Sum_probs=46.7

Q ss_pred             ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCCCCcc
Q 044385           54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPRGFQC  131 (132)
Q Consensus        54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~gf~C  131 (132)
                      .+|..|...+.+   ..-..++.+.||+-|+.+   |. .|+|..++...+.+ +|..- ...|...||..+|. ++|
T Consensus         6 ~~L~~C~~yl~~---~~~~~~Ps~~CC~~vk~~---~~-~C~C~~~~~~~~~~-i~~~~-a~~Lp~~Cgv~~p~-~~C   73 (73)
T cd04660           6 DLLAECQPYVTG---PNPPPPPSRECCAALRRA---DL-PCLCRYKTSLVLQI-IDPDK-AVYLPAKCGLPLPP-SSC   73 (73)
T ss_pred             HHHHHHHHHHcC---CCCCCCCCHHHHHHHHcC---Cc-CCEeeccCCCcccc-cCHHH-HHHHHHHcCCCCCC-CCC
Confidence            467778887631   100123567899999974   22 39999998876543 55444 45789999999999 988

Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.

>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins

Probab=94.36  E-value=0.035  Score=39.82  Aligned_cols=25  Identities=40%  Similarity=0.380  Sum_probs=17.0

Q ss_pred             CCCcchhHHHHHHHHHHHHHHHHhc
Q 044385            1 MGSKTSASLALFLAVNILFFALVTA   25 (132)
Q Consensus         1 MAsk~~~~~al~l~lnll~f~~~s~   25 (132)
                      ||||+...+++||++.||++|-|++
T Consensus         1 MaSK~~llL~l~LA~lLlisSevaa   25 (95)
T PF07172_consen    1 MASKAFLLLGLLLAALLLISSEVAA   25 (95)
T ss_pred             CchhHHHHHHHHHHHHHHHHhhhhh
Confidence            9999744466666666666666664

Some of them may be involved in resistance to environmental stress [].

>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]

Probab=93.20  E-value=0.0057  Score=41.52  Aligned_cols=67  Identities=27%  Similarity=0.571  Sum_probs=48.3

Q ss_pred             ccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccc-----------eecccchhhhhhhhcC
Q 044385           54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGI-----------NLNIPLSLSLLLNVCS  122 (132)
Q Consensus        54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi-----------~~~ipv~l~~lln~CG  122 (132)
                      ..+..|...+.+-.     ..+.++||.-|++|    -..|.|.+||..+.++           .++.. ....|.+.||
T Consensus        13 ~~l~~c~~~~~~~~-----~~~~~~CC~~L~~l----~~~C~C~~i~~~~~~~~~q~~~~~~~~~~~~~-~a~~LP~~C~   82 (90)
T PF00234_consen   13 VRLSPCLPYLQGGC-----QQPSQQCCQQLRQL----DPQCRCEAIRQMVRQVIQQQQQGGQEMQIMAQ-RAQNLPSMCN   82 (90)
T ss_dssp             SHHHGGHHHHTTSS-----SHHHHHHHHHHHHH----HHHHHHHHHHHHHHHSHHCTSTCSHHHHHHHH-HHHHHHHHTT
T ss_pred             ccccccHHHHhccc-----ccchHHHhHHHHHH----hHHhhCHHHHHHHHhhhhhhhhhHHHHHHHHH-HHHHHHHHCC
Confidence            55777777764211     13456799999988    8899999999988773           34443 3457889999


Q ss_pred             CCCCCCCcc
Q 044385          123 KSVPRGFQC  131 (132)
Q Consensus       123 k~~P~gf~C  131 (132)
                      ..+|. |.|
T Consensus        83 v~~~~-~~C   90 (90)
T PF00234_consen   83 VSPPY-TDC   90 (90)
T ss_dssp             SSSSS-S-G
T ss_pred             CCCCC-CCC
Confidence            99887 665

The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....

>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins

Probab=92.75  E-value=0.034  Score=35.49  Aligned_cols=59  Identities=25%  Similarity=0.549  Sum_probs=37.1

Q ss_pred             cchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccc-ee-cccchhhhhhhhcC
Q 044385           57 GVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGI-NL-NIPLSLSLLLNVCS  122 (132)
Q Consensus        57 ~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi-~~-~ipv~l~~lln~CG  122 (132)
                      -.|.+.+.|   .  +..+.++||.-++.+.+.| ..|||..+|...... .+ |. -....|...||
T Consensus         2 ~~C~~y~~~---~--~~~Ps~~CC~~l~~~~~~~-~~ClC~~~~~~~~~~~~~~~~-~~a~~LP~~Cg   62 (63)
T cd00010           2 APCLSYLTG---G--ATAPPSDCCSGLKSVVKSD-PKCLCAALNGPGASLLGLKNA-TRALALPAACG   62 (63)
T ss_pred             cchHHHHcC---C--CCCCChHHHHHHHHHHhcC-hhhHHHHHcCccccccCcccH-HHHHhchHhcC
Confidence            346666531   1  1356678999999887764 469999999865432 11 22 23345667776

Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.

>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes

Probab=87.47  E-value=0.13  Score=35.22  Aligned_cols=68  Identities=29%  Similarity=0.542  Sum_probs=44.0

Q ss_pred             cccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhcccce-ecccchhhhhhhhcCCCCC
Q 044385           53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILGIN-LNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlgi~-~~ipv~l~~lln~CGk~~P  126 (132)
                      ..+|..|.+.+.|-     +..|..+||.-++.|.+.    +.-.|+|.-+|....++. +|...+ ..|-..||-..|
T Consensus         7 ~~~l~~C~~y~~g~-----~~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~~~~~~~i~~~~a-~~LP~~C~v~~~   79 (89)
T cd01960           7 TSLLAPCLGYLTGG-----GPAPSPACCSGVKSLNGLAKTTADRQAACNCLKSAAAGISGLNPGRA-AGLPGKCGVSIP   79 (89)
T ss_pred             HhhHHhHHHHHhCC-----CCCCChHHhhhhHHHhhccCCCCchhhhhhcccccccccCCCCHHHH-HhChHhcccCCC
Confidence            34677888887531     135667899999998654    223566666777666554 554333 467888988754

In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
1hyp_A	80	Crystal Structure Of Hydrophobic Protein From Soybe		4e-04

>pdb|1HYP|A Chain A, Crystal Structure Of Hydrophobic Protein From Soybean; A Member Of A New Cystine-Rich Family Length = 80

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 10/54 (18%)
Query: 48  SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKA 101
           SCP     L +C N+L G    ++GT  V  CC LI GL D+EA VCLC  ++A
Sbjct: 7   SCP----DLSICLNILGG----SLGT--VDDCCALIGGLGDIEAIVCLCIQLRA 50
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	132
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	6e-21

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1 Length = 80

 Score = 79.5 bits (196), Expect = 6e-21
 Identities = 34/87 (39%), Positives = 45/87 (51%), Gaps = 13/87 (14%)

Query: 45  SGASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANIL 104
           +  SCP     L +C N+L G L        V  CC LI GL D+EA VCLC  ++A  +
Sbjct: 4   TRPSCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGI 53

Query: 105 GINLNIPLSLSLLLNVCSKSVPRGFQC 131
              LN+  +L L+LN C +S P    C
Sbjct: 54  ---LNLNRNLQLILNSCGRSYPSNATC 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
1hyp_A	80	Hydrophobic protein from soybean; hydrophobic SEED	99.96
1l6h_A	69	LTP2, non-specific lipid transfer protein; NSLTP2,	95.95
1n89_A	67	Lipid transfer protein; lipid transport; HET: PGM;	95.91
2rkn_A	77	DIR1 protein, AT5G48485; LTP, defense signaling pr	95.26
1siy_A	91	LTP 1, NS-LTP1, nonspecific lipid-transfer protein	92.89
2alg_A	92	Non-specific lipid transfer protein; LTP, NS-LTP,	92.16
1afh_A	93	Maize nonspecific lipid transfer protein; lipid-bi	87.29
2ljo_A	93	Non-specific lipid-transfer protein 2; lipid trans	87.22
1bwo_A	90	NS-LTP1, nonspecific lipid-transfer protein; wheat	86.97
1t12_A	91	LTP 1, nonspecific lipid-transfer protein 1; cyste	82.76

>1hyp_A Hydrophobic protein from soybean; hydrophobic SEED protein; 1.80A {Glycine max} SCOP: a.52.1.1

Probab=99.96  E-value=3.4e-31  Score=183.81  Aligned_cols=73  Identities=51%  Similarity=1.060  Sum_probs=66.6

Q ss_pred             CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385           47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P  126 (132)
                      ++||    ||++|+|||+|.+    |  +.++|||+|+||+|+|||+|||||||  +||| +|+|+++++|+|.|||++|
T Consensus         6 ~~CP----kLgvCanvL~g~~----~--~~~~CC~Ll~GL~dleAAvCLCtaik--~Lgi-lnlpv~L~llln~Cgk~~P   72 (80)
T 1hyp_A            6 PSCP----DLSICLNILGGSL----G--TVDDCCALIGGLGDIEAIVCLCIQLR--ALGI-LNLNRNLQLILNSCGRSYP   72 (80)
T ss_dssp             CCSC----CCGGGGGGGGTCC----T--THHHHHHHHHTSCHHHHHHHHHHHHH--HHTC-SCHHHHHHHHHHHTTCSSC
T ss_pred             CCCC----chhHHHHHhCcCC----C--CCCccchhhhCcchhhhhhhhhhhcc--ccce-eecChhHHHHHHHhCCcCc
Confidence            4799    8999999997543    2  66789999999999999999999999  4899 9999999999999999999


Q ss_pred             CCCccC
Q 044385          127 RGFQCA  132 (132)
Q Consensus       127 ~gf~C~  132 (132)
                      +||+|+
T Consensus        73 ~gF~C~   78 (80)
T 1hyp_A           73 SNATCP   78 (80)
T ss_dssp             CCCCCS
T ss_pred             CCCCCC
Confidence            999996

>1l6h_A LTP2, non-specific lipid transfer protein; NSLTP2, plant LTP, lipid transport; NMR {Oryza sativa} SCOP: a.52.1.1

Probab=95.95  E-value=0.00071  Score=44.38  Aligned_cols=60  Identities=25%  Similarity=0.590  Sum_probs=44.6

Q ss_pred             cccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385           55 KLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        55 kL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P  126 (132)
                      +|..|.+.+.      -|.++..+||.-+++     ...|||..+|...++..+|.+.+. .|...||..+|
T Consensus         7 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P   66 (69)
T 1l6h_A            7 QLTVCTGAIA------GGARPTAACCSSLRA-----QQGCFCQFAKDPRYGRYVNSPNAR-KAVSSCGIALP   66 (69)
T ss_dssp             THHHHHHHHT------TCCSTTHHHHHHHHH-----HHHHHHHHTTCSSHHHHTTTTTGG-GCCCCCSSCSC
T ss_pred             hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence            5788888763      134567789999984     489999999876555456666665 47889999987

>1n89_A Lipid transfer protein; lipid transport; HET: PGM; NMR {Triticum turgidum subsp} SCOP: a.52.1.1 PDB: 1tuk_A*

Probab=95.91  E-value=0.00066  Score=44.29  Aligned_cols=60  Identities=28%  Similarity=0.593  Sum_probs=44.3

Q ss_pred             cccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385           55 KLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        55 kL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P  126 (132)
                      +|..|.+.+.      -|.++..+||.-+++     ...|+|..+|...++..+|.+.+. .|...||..+|
T Consensus         6 ~L~pC~~~v~------~~~~Ps~~CC~~lk~-----~~~ClC~~~k~~~~~~~in~~~A~-~Lp~~Cgv~~P   65 (67)
T 1n89_A            6 QLAVCASAIL------SGAKPSGECCGNLRA-----QQGCFCQYAKDPTYGQYIRSPHAR-DTLTSCGLAVP   65 (67)
T ss_dssp             TTHHHHHHHT------TCCCCCHHHHHHHHH-----HSSHHHHGGGCSTTHHHHTCHHHH-HHHHHHTSCCS
T ss_pred             hcccCHHHHc------CCCCCCHHHHHhhCC-----CCCCCCccccCcccccccCHHHHH-HHHHHcCCCCC
Confidence            5788888763      134567789999984     478999999876665445655555 57889999987

>2rkn_A DIR1 protein, AT5G48485; LTP, defense signaling protein, signaling protein, lipid TRA; HET: LP3; 1.60A {Arabidopsis thaliana}

Probab=95.26  E-value=0.0029  Score=41.90  Aligned_cols=70  Identities=29%  Similarity=0.521  Sum_probs=47.9

Q ss_pred             CCCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhh---hhcccceecccchhhhhhhhcCC
Q 044385           47 ASCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIK---ANILGINLNIPLSLSLLLNVCSK  123 (132)
Q Consensus        47 ~~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aik---a~vlgi~~~ipv~l~~lln~CGk  123 (132)
                      ..|-.+..+|..|.+.+.+   .. ..++...||.-+++ +|   -.|||..++   +.-+||  |...++ .|...||.
T Consensus         3 ~~C~~~~~~L~pC~~yv~~---~~-~~~Ps~~CC~~lk~-~~---~~ClC~~~~~~~~~~~gi--n~~~A~-~LP~~Cgv   71 (77)
T 2rkn_A            3 DLCGMSQDELNECKPAVSK---EN-PTSPSQPCCTALQH-AD---FACLCGYKNSPWLGSFGV--DPELAS-ALPKQCGL   71 (77)
T ss_dssp             CBTTBCHHHHHHHGGGGBS---SS-CCCCCHHHHHHHTT-CC---HHHHHTTTTCHHHHHHTB--CHHHHH-HHHHHTTC
T ss_pred             chHHhHHHhHhhCHHHHcC---CC-CCCCCHHHHHHHHh-cC---cCCcCcccCCcchhhcCc--CHHHHH-HHHHHcCC
Confidence            3577777788889888742   00 13566689999998 33   389999888   343454  444444 58889999


Q ss_pred             CCCC
Q 044385          124 SVPR  127 (132)
Q Consensus       124 ~~P~  127 (132)
                      .+|.
T Consensus        72 ~~p~   75 (77)
T 2rkn_A           72 ANAP   75 (77)
T ss_dssp             SCCC
T ss_pred             CCCC
Confidence            8763

>1siy_A LTP 1, NS-LTP1, nonspecific lipid-transfer protein 1; alpha helix, lipid binding protein; NMR {Vigna radiata var}

Probab=92.89  E-value=0.011  Score=40.44  Aligned_cols=70  Identities=24%  Similarity=0.473  Sum_probs=45.3

Q ss_pred             CCcccccccchhhhcccccccccCCCCCCCCCccccccccc-----h-hhhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385           49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL-----E-AAVCLCTAIKANILGINLNIPLSLSLLLNVCS  122 (132)
Q Consensus        49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-Aa~CLC~aika~vlgi~~~ipv~l~~lln~CG  122 (132)
                      |-....+|..|.+.+.|      |.++..+||.-+++|.+.     | -+.|+|..-.+.-++ .+|...+. .|...||
T Consensus         3 C~~v~~~L~pCl~yv~~------~~~Ps~~CC~~lk~l~~~a~t~~d~~~~ClC~k~~~~~~~-~in~~~A~-~LP~~Cg   74 (91)
T 1siy_A            3 CGQVQGNLAQCIGFLQK------GGVVPPSCCTGVKNILNSSRTTADRRAVCSCLKAAAGAVR-GINPNNAE-ALPGKCG   74 (91)
T ss_dssp             TTTTHHHHHHHHHHHTS------CSCCCHHHHHHHHHHHTTTCSSHHHHHHHHHHHHHTTCCS-SCCHHHHH-HHHHHHT
T ss_pred             HHHHHHhccCcHHHHhC------CCCCcHHHHHHHHHHHhhhccCCCCCcCCcccCCcccccC-CcCHHHHH-HHHHHcC
Confidence            55555678888888742      233666899999988543     3 268999722223332 45555554 5888999


Q ss_pred             CCCC
Q 044385          123 KSVP  126 (132)
Q Consensus       123 k~~P  126 (132)
                      ..+|
T Consensus        75 v~~p   78 (91)
T 1siy_A           75 VNIP   78 (91)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            9876

>2alg_A Non-specific lipid transfer protein; LTP, NS-LTP, FOOD allergen, lipid transport; HET: DAO P6G; 2.30A {Prunus persica} PDB: 2b5s_A*

Probab=92.16  E-value=0.0062  Score=41.73  Aligned_cols=67  Identities=24%  Similarity=0.456  Sum_probs=45.2

Q ss_pred             ccccccchhhhcccccccccCCCCCCCCCccccccccc-----h-hhhHHHHHhhhhcccceecccchhhhhhhhcCCCC
Q 044385           52 DALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL-----E-AAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSV  125 (132)
Q Consensus        52 d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~-----d-Aa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~  125 (132)
                      ...+|..|.+.+.|      |.++..+||.-+++|...     | -+.|||...++.-++ .+|...+. .|...||-.+
T Consensus         7 v~~~L~pCl~y~~~------~~~p~~~CC~~lk~l~~~a~t~~d~~~~ClC~~~~~~~~~-~in~~~A~-~LP~~Cgv~~   78 (92)
T 2alg_A            7 VSSSLAPCIPYVRG------GGAVPPACCNGIRNVNNLARTTPDRQAACNCLKQLSASVP-GVNPNNAA-ALPGKCGVSI   78 (92)
T ss_dssp             HHHHHGGGHHHHHH------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHST-TCCHHHHH-HHHHHTTCCC
T ss_pred             HHHhccCcHHHHcC------CCCCCHHHHHHHHHHHhhhcccCCCCcCCccccCcccccC-ccChHHHH-HHHHHcCCCC
Confidence            34467888887642      234555899999987632     2 268999977666663 45544554 5888999987


Q ss_pred             C
Q 044385          126 P  126 (132)
Q Consensus       126 P  126 (132)
                      |
T Consensus        79 p   79 (92)
T 2alg_A           79 P   79 (92)
T ss_dssp             S
T ss_pred             C
Confidence            6

>1afh_A Maize nonspecific lipid transfer protein; lipid-binding protein, molecular modeling,; NMR {Zea mays} SCOP: a.52.1.1 PDB: 1fk0_A* 1fk1_A* 1fk2_A* 1fk3_A* 1fk4_A* 1fk5_A* 1fk6_A* 1fk7_A* 1mzl_A 1mzm_A* 1bv2_A 1rzl_A* 1uva_A* 1uvb_A* 1uvc_A*

Probab=87.29  E-value=0.043  Score=37.51  Aligned_cols=71  Identities=27%  Similarity=0.518  Sum_probs=45.2

Q ss_pred             CCcccccccchhhhcccccccccCCCCCCCCCcccccccc---chh---hhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385           49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLAD---LEA---AVCLCTAIKANILGINLNIPLSLSLLLNVCS  122 (132)
Q Consensus        49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d---~dA---a~CLC~aika~vlgi~~~ipv~l~~lln~CG  122 (132)
                      |-....+|..|.+.+.|    . +..+..+||.-+++|.+   ..+   +.|+|....+.-++ .+|...++ .|...||
T Consensus         4 C~~v~~~L~pCl~y~~~----~-~~~Ps~~CC~gv~~l~~~a~t~~dr~~~ClC~~~~~~~~~-~in~~~A~-~LP~~C~   76 (93)
T 1afh_A            4 CGQVASAIAPCISYARG----Q-GSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVS-GLNAGNAA-SIPSKCG   76 (93)
T ss_dssp             SHHHHHHHGGGHHHHTT----S-CCSCCHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHTTST-TCCHHHHH-HHHHHHH
T ss_pred             hHHHHHhccCcHHHHcC----C-CCCChHHHHHHHHHHHHhhcCCCCCcccCEeecccccccc-CcCHHHHH-HHHHHcC
Confidence            44445578888888742    1 23455679999998853   222   78999765555452 34444444 5788999


Q ss_pred             CCCC
Q 044385          123 KSVP  126 (132)
Q Consensus       123 k~~P  126 (132)
                      -.+|
T Consensus        77 v~~p   80 (93)
T 1afh_A           77 VSIP   80 (93)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            8766

>2ljo_A Non-specific lipid-transfer protein 2; lipid transport; NMR {Lens culinaris}

Probab=87.22  E-value=0.068  Score=36.85  Aligned_cols=71  Identities=24%  Similarity=0.478  Sum_probs=45.4

Q ss_pred             ccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhccc-ceecccchhhhhhhhcCCCCC--
Q 044385           54 LKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILG-INLNIPLSLSLLLNVCSKSVP--  126 (132)
Q Consensus        54 lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlg-i~~~ipv~l~~lln~CGk~~P--  126 (132)
                      ..|.-|.+.+.|      |..+..+||.-+++|.+.    +.-.|+|..+|...-+ ..+|..-+ ..|-..||-++|  
T Consensus         9 ~~L~pCl~Yv~g------~~~p~~~CC~gv~~l~~~a~t~~dr~~~C~clk~~a~~~~~in~~~a-~~LP~~CgV~~p~~   81 (93)
T 2ljo_A            9 SDLSPCLTYLTG------GPGPSPQCCGGVKKLLAAANTTPDRQAACNCLKSAAGSITKLNTNNA-AALPGKCGVNIPYK   81 (93)
T ss_dssp             HHHHHHHHHHTT------SSCCCHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHGGGCTTCCHHHH-HHHHHHHTCCCSSC
T ss_pred             HHHHhHHHHHcC------CCCCCCchhhHHHHHHHHhcCcccHHHHHHhHHhhhhccCCcCHHHH-HhhhHhcCCCCCCC
Confidence            355667666532      234566899988877553    2347889888875532 23454444 358889999988  


Q ss_pred             --CCCcc
Q 044385          127 --RGFQC  131 (132)
Q Consensus       127 --~gf~C  131 (132)
                        ..+.|
T Consensus        82 Is~~~dC   88 (93)
T 2ljo_A           82 ISTTTNC   88 (93)
T ss_dssp             CSTTCCG
T ss_pred             CCCCCCC
Confidence              55666

>1bwo_A NS-LTP1, nonspecific lipid-transfer protein; wheat, lipid binding, crystallography; HET: LPC; 2.10A {Triticum aestivum} SCOP: a.52.1.1 PDB: 1cz2_A* 1gh1_A 1be2_A* 1jtb_A* 1lip_A 1mid_A* 3cee_A* 3gsh_A*

Probab=86.97  E-value=0.03  Score=38.18  Aligned_cols=66  Identities=23%  Similarity=0.435  Sum_probs=41.7

Q ss_pred             cccccchhhhcccccccccCCCCCCCCCccccccccc---h---hhhHHHHHhhhhcccceecccchhhhhhhhcCCCCC
Q 044385           53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL---E---AAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVP  126 (132)
Q Consensus        53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~---d---Aa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P  126 (132)
                      ..+|..|.+.+.|      |.++..+||.-+++|.+.   .   -+.|+|..-.+.-++ .+|...+. .|...||-.+|
T Consensus         7 ~~~L~pCl~y~~~------~~~Ps~~CC~~lk~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~v~~p   78 (90)
T 1bwo_A            7 DSLVRPCLSYVQG------GPGPSGQCCDGVKNLHNQARSQSDRQSACNCLKGIARGIH-NLNEDNAR-SIPPKCGVNLP   78 (90)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTCT-TCCHHHHH-THHHHHTCCCS
T ss_pred             HHhhcccHHHHcC------CCCCCHHHhHHHHHHHhhccCCCCCCccCcCccCchhccC-CcCHHHHH-HHHHHcCCCCC
Confidence            4467788887642      223666899999987632   1   278999433333332 34544444 57889999866

>1t12_A LTP 1, nonspecific lipid-transfer protein 1; cystein rich protein, lipid transport; NMR {Nicotiana tabacum}

Probab=82.76  E-value=0.12  Score=35.25  Aligned_cols=69  Identities=22%  Similarity=0.474  Sum_probs=43.0

Q ss_pred             CCcccccccchhhhcccccccccCCCCCCCCCccccccccch------hhhHHHHHhhhhcccceecccchhhhhhhhcC
Q 044385           49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLE------AAVCLCTAIKANILGINLNIPLSLSLLLNVCS  122 (132)
Q Consensus        49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~d------Aa~CLC~aika~vlgi~~~ipv~l~~lln~CG  122 (132)
                      |-....+|..|.+.+.|      |.++. .||.-+++|...-      -+.|+|..--++-++ .+|...++ .|...||
T Consensus         4 C~~v~~~L~pCl~y~~~------~~~P~-~CC~gv~~l~~~a~t~~dr~~~ClClk~~~~~~~-~in~~~A~-~LP~~C~   74 (91)
T 1t12_A            4 CGQVTSNLAPCLAYLRN------TGPLG-RCCGGVKALVNSARTTEDRQIACTCLKSAAGAIS-GINLGKAA-GLPSTCG   74 (91)
T ss_dssp             HHHHHHHTHHHHHHHTT------SSCCT-THHHHHHHHHHTTCSTHHHHHHHHHHHHHHHHCT-TCCHHHHH-HHHHHTT
T ss_pred             hHHHHHhccCcHHHHcC------CCChH-HHHHHHHHHHhhccCCCCCCccCCCccccccccC-CcChhHHH-HHHHHcC
Confidence            33334467778887642      12255 8999999886531      378999633334443 34544444 5888999


Q ss_pred             CCCC
Q 044385          123 KSVP  126 (132)
Q Consensus       123 k~~P  126 (132)
                      -.+|
T Consensus        75 v~~p   78 (91)
T 1t12_A           75 VNIP   78 (91)
T ss_dssp             CCCS
T ss_pred             CCCC
Confidence            9866

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	132
d1hypa_	75	a.52.1.1 (A:) Soybean hydrophobic protein {Soybean	2e-23

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]} Length = 75

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

 Score = 84.4 bits (209), Expect = 2e-23
 Identities = 34/84 (40%), Positives = 44/84 (52%), Gaps = 13/84 (15%)

Query: 48  SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGIN 107
           SCP     L +C N+L G L        V  CC LI GL D+EA VCLC  ++A  +   
Sbjct: 2   SCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGI--- 48

Query: 108 LNIPLSLSLLLNVCSKSVPRGFQC 131
           LN+  +L L+LN C +S P    C
Sbjct: 49  LNLNRNLQLILNSCGRSYPSNATC 72

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1hypa_	75	Soybean hydrophobic protein {Soybean (Glycine max)	99.96
d1tuka1	67	Non-specific lipid-transfer protein homologue (ns-	89.65
d1fk5a_	93	Plant non-specific lipid-transfer protein (ns-LTP,	89.62
d1mida_	91	Plant non-specific lipid-transfer protein (ns-LTP,	88.88
d1l6ha_	69	Non-specific lipid-transfer protein homologue (ns-	87.64

>d1hypa_ a.52.1.1 (A:) Soybean hydrophobic protein {Soybean (Glycine max) [TaxId: 3847]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Soybean hydrophobic protein
species: Soybean (Glycine max) [TaxId: 3847]

Probab=99.96  E-value=1.2e-31  Score=182.33  Aligned_cols=72  Identities=47%  Similarity=0.962  Sum_probs=65.8

Q ss_pred             CCCcccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCC
Q 044385           48 SCPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPR  127 (132)
Q Consensus        48 ~CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~  127 (132)
                      +||    ||++|+|||||++      ++.++||++|+||+|+|||+||||+|||+++   +|+||++++++|.|||++|+
T Consensus         2 tCP----Klg~C~nvLg~~~------~~~~~CC~Ll~GL~dleAAvCLCtaika~~l---lnvpv~l~llln~Cgk~~P~   68 (75)
T d1hypa_           2 SCP----DLSICLNILGGSL------GTVDDCCALIGGLGDIEAIVCLCIQLRALGI---LNLNRNLQLILNSCGRSYPS   68 (75)
T ss_dssp             CSC----CCGGGGGGGGTCC------TTHHHHHHHHHTSCHHHHHHHHHHHHHHHTC---SCHHHHHHHHHHHTTCSSCC
T ss_pred             CCC----chhhHHHHhcCcc------CCCCCcchHHhhHHHHHHHHHHHHHHHHhhh---ccccchHHHHHHHcCCcCcC
Confidence            799    8999999998664      4568899999999999999999999999654   88999999999999999999


Q ss_pred             CCccC
Q 044385          128 GFQCA  132 (132)
Q Consensus       128 gf~C~  132 (132)
                      ||+||
T Consensus        69 gF~CP   73 (75)
T d1hypa_          69 NATCP   73 (75)
T ss_dssp             CCCCS
T ss_pred             CCcCC
Confidence            99996

>d1tuka1 a.52.1.1 (A:1-67) Non-specific lipid-transfer protein homologue (ns-LTP2) {Triticum turgidum [TaxId: 4571]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Triticum turgidum [TaxId: 4571]

Probab=89.65  E-value=0.03  Score=35.63  Aligned_cols=64  Identities=28%  Similarity=0.562  Sum_probs=48.8

Q ss_pred             ccccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCC
Q 044385           52 DALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPR  127 (132)
Q Consensus        52 d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~  127 (132)
                      |..+|..|+..+.      -|.++...||.-+.     |---|||.=+|.-.+.--++-|- -+-+++.||..+|.
T Consensus         3 ~p~~L~~C~~Ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~kdP~~~~yv~spn-arkv~~aCgvp~P~   66 (67)
T d1tuka1           3 QASQLAVCASAIL------SGAKPSGECCGNLR-----AQQGCFCQYAKDPTYGQYIRSPH-ARDTLTSCGLAVPH   66 (67)
T ss_dssp             CGGGGGGGHHHHH------HCCCCCHHHHHHHH-----HHGGGHHHHTTCTTTHHHHTSHH-HHHHHHHTTCCCCC
T ss_pred             ChhhccccHHHHh------cCCCCcHHHHHHHH-----hcCCccceecCCccHHHHcCCHH-HHHHHHhcCCCCCC
Confidence            3457999998853      46788889999887     44679999999887764455443 46788999998874

>d1fk5a_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Maize (Zea mays) [TaxId: 4577]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Maize (Zea mays) [TaxId: 4577]

Probab=89.62  E-value=0.0095  Score=39.30  Aligned_cols=77  Identities=23%  Similarity=0.542  Sum_probs=50.8

Q ss_pred             CCcccccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhcccc-eecccchhhhhhhhcCC
Q 044385           49 CPRDALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILGI-NLNIPLSLSLLLNVCSK  123 (132)
Q Consensus        49 CP~d~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlgi-~~~ipv~l~~lln~CGk  123 (132)
                      |..-..+|.-|.+.+.|     -+..|.++||.-+++|.+.    +...|+|..||...-+. .+|.. ....|-..||-
T Consensus         4 C~~v~~~l~pCl~Yltg-----~~~~Ps~~CC~gv~~l~~~a~t~~dr~~lC~cl~~~~~~~~~in~~-ra~~LP~~C~v   77 (93)
T d1fk5a_           4 CGQVASAIAPCISYARG-----QGSGPSAGCCSGVRSLNNAARTTADRRAACNCLKNAAAGVSGLNAG-NAASIPSKCGV   77 (93)
T ss_dssp             HHHHHHHHGGGHHHHTT-----CSSSCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHH-HHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHhC-----CCCCCCCchhHHHHHHHHHccCCccHHHHHHhhhhcccccCCcCHH-HHHhhhHhcCC
Confidence            33334477788888742     1234667899999988763    34578888888765332 34433 34568889998


Q ss_pred             CCC----CCCcc
Q 044385          124 SVP----RGFQC  131 (132)
Q Consensus       124 ~~P----~gf~C  131 (132)
                      ++|    ..+.|
T Consensus        78 ~l~~pis~~~dC   89 (93)
T d1fk5a_          78 SIPYTISTSTDC   89 (93)
T ss_dssp             CCSSCCSTTCCG
T ss_pred             CCCCCCCCCCCC
Confidence            877    56666

>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1)
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=88.88  E-value=0.011  Score=38.86  Aligned_cols=72  Identities=25%  Similarity=0.539  Sum_probs=49.2

Q ss_pred             cccccchhhhcccccccccCCCCCCCCCccccccccc----hhhhHHHHHhhhhccc-ceecccchhhhhhhhcCCCCC-
Q 044385           53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADL----EAAVCLCTAIKANILG-INLNIPLSLSLLLNVCSKSVP-  126 (132)
Q Consensus        53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~----dAa~CLC~aika~vlg-i~~~ipv~l~~lln~CGk~~P-  126 (132)
                      ..+|.-|.+.+.|      |..+.++||.-+++|.+.    +.-.|+|..+|....+ ..+|..- ...|-..||-++| 
T Consensus         7 ~~~l~pCl~Yl~g------~~~P~~~CC~gv~~L~~~a~t~~d~~~lC~cl~~~~~~~~~in~~r-a~~LP~~C~v~~p~   79 (91)
T d1mida_           7 DSKMKPCLTYVQG------GPGPSGECCNGVRDLHNQAQSSGDRQTVCNCLKGIARGIHNLNLNN-AASIPSKCNVNVPY   79 (91)
T ss_dssp             HHHHGGGHHHHTT------CSCCCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCTTCCHHH-HHHHHHHTTCCCCS
T ss_pred             HHHHHhhHHHHcC------CCCCCcchhhhHHHHHHHhcCCCcHHHHHHhhhhhcccCCCcCHHH-HHhchHhcCCCCCC
Confidence            3466778887642      235667899999988763    3457999999876532 2345433 4468889999988 


Q ss_pred             ---CCCcc
Q 044385          127 ---RGFQC  131 (132)
Q Consensus       127 ---~gf~C  131 (132)
                         ..+.|
T Consensus        80 pis~~~dC   87 (91)
T d1mida_          80 TISPDIDC   87 (91)
T ss_dssp             CCCTTCCG
T ss_pred             CCCCCCCC
Confidence               66766

>d1l6ha_ a.52.1.1 (A:) Non-specific lipid-transfer protein homologue (ns-LTP2) {Rice (Oryza sativa) [TaxId: 4530]}

class: All alpha proteins
fold: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
superfamily: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
family: Plant lipid-transfer and hydrophobic proteins
domain: Non-specific lipid-transfer protein homologue (ns-LTP2)
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=87.64  E-value=0.033  Score=35.63  Aligned_cols=63  Identities=25%  Similarity=0.547  Sum_probs=47.9

Q ss_pred             cccccchhhhcccccccccCCCCCCCCCccccccccchhhhHHHHHhhhhcccceecccchhhhhhhhcCCCCCC
Q 044385           53 ALKLGVCANVLNGLLNVTIGTPPVQPCCTLIQGLADLEAAVCLCTAIKANILGINLNIPLSLSLLLNVCSKSVPR  127 (132)
Q Consensus        53 ~lkL~vCa~vL~gl~~~~~g~p~~~~CC~li~gL~d~dAa~CLC~aika~vlgi~~~ipv~l~~lln~CGk~~P~  127 (132)
                      ..+|..|+..+.      -|.++...||.-+.     |-.-|||.=+|.-.++--++-|- -+-+++.||..+|.
T Consensus         5 p~~L~~C~~ai~------~g~~PS~~CC~kLk-----eQ~~ClC~Y~k~P~~~~yv~spn-arkv~~aCgvp~P~   67 (69)
T d1l6ha_           5 AGQLTVCTGAIA------GGARPTAACCSSLR-----AQQGCFCQFAKDPRYGRYVNSPN-ARKAVSSCGIALPT   67 (69)
T ss_dssp             TTTHHHHHHHHT------TCCSTTHHHHHHHH-----HHHHHHHHHTTCSSHHHHTTTTT-GGGCCCCCSSCSCC
T ss_pred             hhhccccHHHHh------CCCCCcHHHHHHHH-----hcCCccceeccCccHHHHcCCHH-HHHHHHhcCCCCCC
Confidence            447899998753      36778889999888     34679999999887764455444 46788999998875