Citrus Sinensis ID: 044402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
Protein Sequence
MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHccccccHcccccccHHHHHHHccccHHHHHEEEcccccccHHHccc
Coil and Loop (DISEMBL)
MGNTAFHESLFIINRVTkwktkdwneniplyfatsntyIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKkqhcpmfvtnsgyNILHFVVKNGHVNMVKAIIKISETNISMDKVVN
Flexible Loop (DISEMBL)
mgntafhesLFIINRvtkwktkdwnENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIkisetnismdkvvn
Low Complexity Region (SEG)
MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN
Disordered region (IsUnstruct)
*****FHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISET*********
Disordered Region (DISOPRED)
MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI*MDKV**
Disordered Region (DISEMBL)
MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN
Disordered Region (DISPRO)
*GNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	127	2.2.26 [Sep-21-2011]
Q02357	1862	Ankyrin-1 OS=Mus musculus	yes	no	0.708	0.048	0.329	6e-07
P16157	1881	Ankyrin-1 OS=Homo sapiens	yes	no	0.708	0.047	0.318	6e-07
Q5U312	978	Ankycorbin OS=Rattus norv	no	no	0.874	0.113	0.294	2e-05
Q9EP71	979	Ankycorbin OS=Mus musculu	no	no	0.858	0.111	0.281	0.0001
P23631	1401	Alpha-latrotoxin-Lt1a OS=	N/A	no	0.692	0.062	0.280	0.0002
O75762	1119	Transient receptor potent	no	no	0.716	0.081	0.312	0.0003
Q6RI86	1125	Transient receptor potent	no	no	0.716	0.080	0.312	0.0003
Q8BLA8	1125	Transient receptor potent	no	no	0.716	0.080	0.312	0.0004
Q9QZH2	768	BRCA1-associated RING dom	no	no	0.629	0.104	0.333	0.0004
Q12955	4377	Ankyrin-3 OS=Homo sapiens	no	no	0.881	0.025	0.267	0.0004

>sp|Q02357|ANK1_MOUSE Ankyrin-1 OS=Mus musculus GN=Ank1 PE=1 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 24  WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
           WN   PL+ A     I     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct: 596 WNGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQ 654

Query: 84  HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                   SG   LH V + GHV +   +IK
Sbjct: 655 ANGNLGNKSGLTPLHLVSQEGHVPVADVLIK 685

Attaches integral membrane proteins to cytoskeletal elements; binds to the erythrocyte membrane protein band 4.2, to Na-K ATPase, to the lymphocyte membrane protein GP85, and to the cytoskeletal proteins fodrin, tubulin, vimentin and desmin. Erythrocyte ankyrins also link spectrin (beta chain) to the cytoplasmic domain of the erythrocytes anion exchange protein; they retain most or all of these binding functions. In skeletal muscle, isoform Mu7 together with obscurin may provide a molecular link between the sarcoplasmic reticulum and myofibrils.
Mus musculus (taxid: 10090)

>sp|P16157|ANK1_HUMAN Ankyrin-1 OS=Homo sapiens GN=ANK1 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)

Query: 24  WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
           WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct: 600 WNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 658

Query: 84  HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                   SG   LH V + GHV +   +IK
Sbjct: 659 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 689

Isoform Mu17 together with obscurin in skeletal muscle may provide a molecular link between the sarcoplasmic reticulum and myofibrils.

Homo sapiens (taxid: 9606)

>sp|Q5U312|RAI14_RAT Ankycorbin OS=Rattus norvegicus GN=Rai14 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 1/112 (0%)

Query: 15  RVTKWKTKDWNENIP-LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV 73
           +  K  T +WN+N   L  A  N     V  LL   G SA +H+ +     HLA   GHV
Sbjct: 7   KFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHV 66

Query: 74  KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKV 125
           + +  M+          +SG++ LH   KNGH   +K +++      S+D +
Sbjct: 67  ECLKVMVTHGVDVTAQDSSGHSALHIAAKNGHPEYIKKLLQYKSPAESVDNL 118

Rattus norvegicus (taxid: 10116)

>sp|Q9EP71|RAI14_MOUSE Ankycorbin OS=Mus musculus GN=Rai14 PE=1 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 50/110 (45%), Gaps = 1/110 (0%)

Query: 15  RVTKWKTKDWNENIP-LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV 73
           +  K  T +WN+N   L  A  N     V  LL   G SA +H+ +     HLA   GHV
Sbjct: 7   KFRKSDTNEWNKNDDRLLQAVENGDAEKVASLLGKKGASATKHDSEGKTAFHLAAAKGHV 66

Query: 74  KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMD 123
           + +  M+          +SG++ LH   KNGH   ++ +++      ++D
Sbjct: 67  ECLKVMVTHGVDVTAQDSSGHSALHVAAKNGHPECIRKLLQYKSPAENID 116

Mus musculus (taxid: 10090)

>sp|P23631|LATA_LATTR Alpha-latrotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=2

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 1/89 (1%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
           +D N + PL  A  N++I  + + ++  G      N K L P+    K G++ ++  +  
Sbjct: 859 EDKNSDTPLNLAAQNSHIDVIKYFID-QGADINTRNKKGLAPLLAFSKKGNLDMVKYLFD 917

Query: 82  KQHCPMFVTNSGYNILHFVVKNGHVNMVK 110
           K        N G N  ++ V+NGH+N+VK
Sbjct: 918 KNANVYIADNDGMNFFYYAVQNGHLNIVK 946

Presynaptic neurotoxin that induces exhaustive neurotransmitter release from vertebrate (but not invertebrate) nerve terminals and endocrine cells. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|O75762|TRPA1_HUMAN Transient receptor potential cation channel subfamily A member 1 OS=Homo sapiens GN=TRPA1 PE=2 SV=3

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAI--EHNIKTLYPIHLACKNGHVKVMVE 78
           +K  ++  PL+FA S   I     LL+    + +  E ++  + P+HLA KNGH KV+  
Sbjct: 441 SKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQL 500

Query: 79  MLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAII 113
           +LKK    +F+++ +G+  LH     G+   +K I+
Sbjct: 501 LLKKG--ALFLSDHNGWTALHHASMGGYTQTMKVIL 534

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Homo sapiens (taxid: 9606)

>sp|Q6RI86|TRPA1_RAT Transient receptor potential cation channel subfamily A member 1 OS=Rattus norvegicus GN=Trpa1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAI--EHNIKTLYPIHLACKNGHVKVMVE 78
           +K  ++  PL+FA S   I     LL+    + +  E ++  + P+HLA KNGH KV+  
Sbjct: 442 SKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQL 501

Query: 79  MLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAII 113
           +LKK    +F+++ +G+  LH     G+   +K I+
Sbjct: 502 LLKKG--ALFLSDHNGWTALHHASMGGYTQTMKVIL 535

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Rattus norvegicus (taxid: 10116)

>sp|Q8BLA8|TRPA1_MOUSE Transient receptor potential cation channel subfamily A member 1 OS=Mus musculus GN=Trpa1 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 5/96 (5%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAI--EHNIKTLYPIHLACKNGHVKVMVE 78
           +K  ++  PL+FA S   I     LL+    + +  E ++  + P+HLA KNGH KV+  
Sbjct: 442 SKSKDKKSPLHFAASYGRINTCQRLLQDISDTRLLNEGDLHGMTPLHLAAKNGHDKVVQL 501

Query: 79  MLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAII 113
           +LKK    +F+++ +G+  LH     G+   +K I+
Sbjct: 502 LLKKG--ALFLSDHNGWTALHHASMGGYTQTMKVIL 535

Receptor-activated non-selective cation channel involved in detection of pain and possibly also in cold perception and inner ear function. Has a central role in the pain response to endogenous inflammatory mediators and to a diverse array of volatile irritants, such as mustard oil, garlic and acrolein, an irritant from tears gas and vehicule exhaust fumes. Acts also as a ionotropic cannabinoid receptor by being activated by delta(9)-tetrahydrocannabinol (THC), the psychoactive component of marijuana. Not involved in menthol sensation. May be a component for the mechanosensitive transduction channel of hair cells in inner ear, thereby participating in the perception of sounds. Probably operated by a phosphatidylinositol second messenger system.

Mus musculus (taxid: 10090)

>sp|Q9QZH2|BARD1_RAT BRCA1-associated RING domain protein 1 OS=Rattus norvegicus GN=Bard1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 49/87 (56%), Gaps = 7/87 (8%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
           L+ A+    I  V +LL+ NG+     +     P+H AC +GH+K+ VE+L + +    V
Sbjct: 422 LHIASIKGDISSVEYLLQ-NGNDPNVKDHAGWTPLHEACSHGHLKI-VELLLQHNA--LV 477

Query: 90  TNSGY---NILHFVVKNGHVNMVKAII 113
             +GY   + LH   KNGH+++VK ++
Sbjct: 478 NTTGYHNDSPLHDAAKNGHIDIVKVLL 504

Probable E3 ubiquitin-protein ligase. The BRCA1-BARD1 heterodimer specifically mediates the formation of 'Lys-6'-linked polyubiquitin chains and coordinates a diverse range of cellular pathways such as DNA damage repair, ubiquitination and transcriptional regulation to maintain genomic stability. Plays a central role in the control of the cell cycle in response to DNA damage. Acts by mediating ubiquitin E3 ligase activity that is required for its tumor suppressor function. Also forms a heterodimer with CSTF1/CSTF-50 to modulate mRNA processing and RNAP II stability by inhibiting pre-mRNA 3' cleavage.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q12955|ANK3_HUMAN Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 34/146 (23%)

Query: 2   GNTAFHESL--FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELN---------- 49
           G  + HE +   +++R     +K  N   PL+ AT   ++  V  LL+ N          
Sbjct: 308 GARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDY 367

Query: 50  ----------GHSAIEH---------NIKTL---YPIHLACKNGHVKVMVEMLKKQHCPM 87
                     GH  +           N K L    P+H+ACK   +KVM  +LK      
Sbjct: 368 LTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPLHIACKKNRIKVMELLLKHGASIQ 427

Query: 88  FVTNSGYNILHFVVKNGHVNMVKAII 113
            VT SG   +H     GHVN+V  ++
Sbjct: 428 AVTESGLTPIHVAAFMGHVNIVSQLM 453

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
224124524	673	predicted protein [Populus trichocarpa]	0.700	0.132	0.411	5e-09
302143275	671	unnamed protein product [Vitis vinifera]	0.795	0.150	0.336	6e-09
225446327	666	PREDICTED: ankyrin repeat-containing pro	0.795	0.151	0.336	6e-09
224148469	479	predicted protein [Populus trichocarpa]	0.732	0.194	0.393	2e-08
224124536	406	predicted protein [Populus trichocarpa]	0.708	0.221	0.410	5e-08
224080225	289	predicted protein [Populus trichocarpa]	0.669	0.294	0.406	1e-07
224161549	347	predicted protein [Populus trichocarpa]	0.669	0.244	0.406	1e-07
224124532	442	predicted protein [Populus trichocarpa]	0.708	0.203	0.4	2e-07
224127170	655	predicted protein [Populus trichocarpa]	0.669	0.129	0.395	5e-07
222424038	572	AT4G05040 [Arabidopsis thaliana]	0.700	0.155	0.333	8e-07

>gi|224124524|ref|XP_002319353.1| predicted protein [Populus trichocarpa] gi|222857729|gb|EEE95276.1| predicted protein [Populus trichocarpa]

 Score = 65.9 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/90 (41%), Positives = 54/90 (60%), Gaps = 1/90 (1%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM-F 88
           L++A+S  ++ GV FLL+   + A + N +  YPIHLACKN  V V+ E LK    P  F
Sbjct: 233 LHYASSRGFLEGVQFLLQKFLNGAYKRNHEGNYPIHLACKNDSVDVVKEFLKITPFPKEF 292

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIKISET 118
           +   G NILH   +NG  N+V+ I++  +T
Sbjct: 293 LNEKGQNILHVAAENGKGNVVRYILRQEKT 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143275|emb|CBI21836.3| unnamed protein product [Vitis vinifera]

 Score = 65.9 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
           ++D     PL++A S  +++GV +LL      A+E +    +PIH+A   GHV V+ E+L
Sbjct: 286 SRDEEGRTPLHYAASIGHLKGVHYLLGKYALGAVERDNSGFFPIHMASIKGHVDVIRELL 345

Query: 81  KKQHCP---MFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN 127
           +  HCP     ++++G NILH    NG   +V  I+K  E    + K++N
Sbjct: 346 R--HCPDPRELLSDNGQNILHVAAINGKYEVVSCILKTPE----LGKLIN 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446327|ref|XP_002273773.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score = 65.5 bits (158), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/110 (33%), Positives = 61/110 (55%), Gaps = 9/110 (8%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
           ++D     PL++A S  +++GV +LL      A+E +    +PIH+A   GHV V+ E+L
Sbjct: 286 SRDEEGRTPLHYAASIGHLKGVHYLLGKYALGAVERDNSGFFPIHMASIKGHVDVIRELL 345

Query: 81  KKQHCP---MFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN 127
           +  HCP     ++++G NILH    NG   +V  I+K  E    + K++N
Sbjct: 346 R--HCPDPRELLSDNGQNILHVAAINGKYEVVSCILKTPE----LGKLIN 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224148469|ref|XP_002336659.1| predicted protein [Populus trichocarpa] gi|222836461|gb|EEE74868.1| predicted protein [Populus trichocarpa]

 Score = 63.9 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/94 (39%), Positives = 55/94 (58%), Gaps = 1/94 (1%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
           KD      L+ A+   Y+ GV FLL+   + A E++ + LYPIH+A KNGHVKV+ E++ 
Sbjct: 51  KDGKGRNALHLASLIGYLEGVQFLLKKIRNGAFEYDDEGLYPIHVASKNGHVKVVKELIN 110

Query: 82  KQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
               P  F+T    NILH   +N   N+V+ I++
Sbjct: 111 LWPDPKEFLTRKSKNILHVAAENDRENVVRYILR 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124536|ref|XP_002319356.1| predicted protein [Populus trichocarpa] gi|222857732|gb|EEE95279.1| predicted protein [Populus trichocarpa]

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP-M 87
           PL++A+S  Y+ GV FLL+     A E + +  YPIHLACK G V ++ E LK    P  
Sbjct: 222 PLHYASSTGYVEGVQFLLQKYRAGADETDQEGNYPIHLACKGGSVALLEEFLKVIPYPNE 281

Query: 88  FVTNSGYNILHFVVKNGHVNMVKAII----KISET 118
           F+   G NILH   +N H  ++  I+    KI ET
Sbjct: 282 FINEKGQNILHVAAQNEHGFLIMYILEQDKKIVET 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080225|ref|XP_002335640.1| predicted protein [Populus trichocarpa] gi|222834637|gb|EEE73100.1| predicted protein [Populus trichocarpa]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM-F 88
           L++A+S  +++GV FLL+     A E N++  YPIHLACK+  V V+ E L     P  F
Sbjct: 45  LHYASSIGFLKGVQFLLKKFDDGAYETNLEGNYPIHLACKSHSVDVVEEFLDIFPYPKEF 104

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
           +   G NILH   K G+ N+V+ ++K
Sbjct: 105 LNKKGQNILHVAAKYGNGNVVRYLLK 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224161549|ref|XP_002338342.1| predicted protein [Populus trichocarpa] gi|222871939|gb|EEF09070.1| predicted protein [Populus trichocarpa]

 Score = 61.2 bits (147), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 1/86 (1%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM-F 88
           L++A+S  +++GV FLL+     A E N++  YPIHLACK+  V V+ E L     P  F
Sbjct: 237 LHYASSIGFLKGVQFLLKKFDDGAYETNLEGNYPIHLACKSHSVDVVEEFLDIFPYPKEF 296

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
           +   G NILH   K G+ N+V+ ++K
Sbjct: 297 LNKKGQNILHVAAKYGNGNVVRYLLK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124532|ref|XP_002319355.1| predicted protein [Populus trichocarpa] gi|222857731|gb|EEE95278.1| predicted protein [Populus trichocarpa]

 Score = 60.5 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/95 (40%), Positives = 53/95 (55%), Gaps = 5/95 (5%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP-M 87
           PL++++S  Y+ GV FLL+     A E + +  YPIHLACK G V ++ E LK    P  
Sbjct: 258 PLHYSSSQGYVEGVQFLLQKYRAGADETDQEGNYPIHLACKGGSVALLEEFLKVIPYPNE 317

Query: 88  FVTNSGYNILHFVVKNGHVNMVKAII----KISET 118
           F+   G NILH   +N H  ++  I+    KI ET
Sbjct: 318 FINKKGQNILHVAAQNEHGFLIMYILEQDKKIVET 352

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127170|ref|XP_002329417.1| predicted protein [Populus trichocarpa] gi|222870467|gb|EEF07598.1| predicted protein [Populus trichocarpa]

 Score = 59.3 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 1/86 (1%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM-F 88
           L++A+S  Y+ G  FLL+     A E + +  YPIHLACKN  V ++ E++K    P  F
Sbjct: 208 LHYASSMGYLDGARFLLQKFPDGANERDQEGNYPIHLACKNDSVDLVKELMKVFPYPKEF 267

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
           +   G NILH   +NG   +V+ I+K
Sbjct: 268 LNAKGQNILHVAAENGQGKVVRHILK 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222424038|dbj|BAH19980.1| AT4G05040 [Arabidopsis thaliana]

 Score = 58.5 bits (140), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 30/90 (33%), Positives = 52/90 (57%), Gaps = 1/90 (1%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK-QHCPMF 88
           L FA S  + +GVC LL+ +  +    +    +PIH A +NGH++++ E+LK+  H    
Sbjct: 311 LSFAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHM 370

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIKISET 118
           +   G N+LH   K G  N+VK++++  +T
Sbjct: 371 LNKLGQNVLHIAAKIGEHNLVKSLMRSDDT 400

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	127
TAIR|locus:2138391	572	AT4G05040 "AT4G05040" [Arabido	0.700	0.155	0.333	2.2e-09
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.748	0.140	0.306	1.1e-07
RGD|1309620	1864	Ank1 "ankyrin 1, erythrocytic"	0.708	0.048	0.329	6.3e-07
UNIPROTKB|F1M3K5	1881	Ank1 "Protein Ank1" [Rattus no	0.708	0.047	0.329	6.3e-07
UNIPROTKB|F1M651	1888	Ank1 "Protein Ank1" [Rattus no	0.708	0.047	0.329	6.3e-07
UNIPROTKB|P16157	1881	ANK1 "Ankyrin-1" [Homo sapiens	0.708	0.047	0.318	8.1e-07
MGI|MGI:88024	1862	Ank1 "ankyrin 1, erythroid" [M	0.708	0.048	0.329	1e-06
UNIPROTKB|F1PRD8	1857	ANK1 "Uncharacterized protein"	0.708	0.048	0.318	1.3e-06
UNIPROTKB|F1SE30	1885	ANK1 "Uncharacterized protein"	0.708	0.047	0.318	1.3e-06
UNIPROTKB|F1PRC8	1916	ANK1 "Uncharacterized protein"	0.708	0.046	0.318	1.3e-06

TAIR|locus:2138391 AT4G05040 "AT4G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/90 (33%), Positives = 52/90 (57%)

Query:    30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK-QHCPMF 88
             L FA S  + +GVC LL+ +  +    +    +PIH A +NGH++++ E+LK+  H    
Sbjct:   311 LSFAASIGFYKGVCNLLDRSTKNVYVCDEDGSFPIHTAAENGHIRIVKEILKRCPHSKHM 370

Query:    89 VTNSGYNILHFVVKNGHVNMVKAIIKISET 118
             +   G N+LH   K G  N+VK++++  +T
Sbjct:   371 LNKLGQNVLHIAAKIGEHNLVKSLMRSDDT 400

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 31/101 (30%), Positives = 53/101 (52%)

Query:    30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP--- 86
             L F  S  Y  G C+LL+    S    +    +PIH+A K G+VK++  +LK+  CP   
Sbjct:   320 LSFGASLGYYEGFCYLLDKALDSVYVSDDDGSFPIHMAVKYGYVKILKAILKR--CPDAL 377

Query:    87 MFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVVN 127
               +     N+LH   KNG + ++K I++  +   + +K++N
Sbjct:   378 ELLDRENQNVLHVAAKNGKIEVLKFILRCCKDK-NKEKLIN 417

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

RGD|1309620 Ank1 "ankyrin 1, erythrocytic" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     I     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   596 WNGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQ 654

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   655 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 685

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISO;IDA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=IMP

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO

GO:0015672 "monovalent inorganic cation transport" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016529 "sarcoplasmic reticulum" evidence=IDA

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=IDA

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=IDA

GO:0030863 "cortical cytoskeleton" evidence=ISO

GO:0031430 "M band" evidence=IDA

GO:0031672 "A band" evidence=IDA

GO:0042383 "sarcolemma" evidence=IDA

GO:0043005 "neuron projection" evidence=IDA

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048821 "erythrocyte development" evidence=ISO

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1M3K5 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     I     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   606 WNGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQ 664

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   665 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 695

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1M651 Ank1 "Protein Ank1" [Rattus norvegicus (taxid:10116)]

 Score = 130 (50.8 bits), Expect = 6.3e-07, P = 6.3e-07
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     I     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   596 WNGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQ 654

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   655 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 685

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|P16157 ANK1 "Ankyrin-1" [Homo sapiens (taxid:9606)]

 Score = 129 (50.5 bits), Expect = 8.1e-07, P = 8.1e-07
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   600 WNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 658

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   659 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 689

GO:0007165 "signal transduction" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0016529 "sarcoplasmic reticulum" evidence=IEA

GO:0031430 "M band" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0007010 "cytoskeleton organization" evidence=NAS

GO:0030507 "spectrin binding" evidence=IDA;NAS;IPI

GO:0016323 "basolateral plasma membrane" evidence=NAS

GO:0008093 "cytoskeletal adaptor activity" evidence=IDA;TAS

GO:0045199 "maintenance of epithelial cell apical/basal polarity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0019899 "enzyme binding" evidence=TAS;IPI

GO:0005856 "cytoskeleton" evidence=NAS

GO:0006887 "exocytosis" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0014731 "spectrin-associated cytoskeleton" evidence=IDA

GO:0051117 "ATPase binding" evidence=IPI

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IDA

MGI|MGI:88024 Ank1 "ankyrin 1, erythroid" [Mus musculus (taxid:10090)]

 Score = 128 (50.1 bits), Expect = 1.0e-06, P = 1.0e-06
 Identities = 30/91 (32%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     I     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   596 WNGYTPLHIAAKQNQIEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHTEMVALLLSKQ 654

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   655 ANGNLGNKSGLTPLHLVSQEGHVPVADVLIK 685

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IMP

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0007165 "signal transduction" evidence=IEA

GO:0008093 "cytoskeletal adaptor activity" evidence=ISO

GO:0010638 "positive regulation of organelle organization" evidence=ISO

GO:0014731 "spectrin-associated cytoskeleton" evidence=ISO;IMP

GO:0015672 "monovalent inorganic cation transport" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0016529 "sarcoplasmic reticulum" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO

GO:0030507 "spectrin binding" evidence=ISO

GO:0030673 "axolemma" evidence=ISO

GO:0030863 "cortical cytoskeleton" evidence=IDA

GO:0031430 "M band" evidence=ISO

GO:0031672 "A band" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0043005 "neuron projection" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048821 "erythrocyte development" evidence=IMP

GO:0051117 "ATPase binding" evidence=ISO

GO:0072661 "protein targeting to plasma membrane" evidence=ISO

UNIPROTKB|F1PRD8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   594 WNGYTPLHIAAKQNQMEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 652

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   653 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 683

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1SE30 ANK1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   633 WNGYTPLHIAAKQNQMEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 691

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   692 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 722

GO:0072661 "protein targeting to plasma membrane" evidence=IEA

GO:0051117 "ATPase binding" evidence=IEA

GO:0048821 "erythrocyte development" evidence=IEA

GO:0030863 "cortical cytoskeleton" evidence=IEA

GO:0030507 "spectrin binding" evidence=IEA

GO:0015672 "monovalent inorganic cation transport" evidence=IEA

GO:0014731 "spectrin-associated cytoskeleton" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|F1PRC8 ANK1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 127 (49.8 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 29/91 (31%), Positives = 45/91 (49%)

Query:    24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
             WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct:   604 WNGYTPLHIAAKQNQMEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 662

Query:    84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                     SG   LH V + GHV +   +IK
Sbjct:   663 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 693

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IMP

GO:0005622 "intracellular" evidence=IMP

GO:0072661 "protein targeting to plasma membrane" evidence=IMP

GO:0007165 "signal transduction" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131101 hypothetical protein (673 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	127
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-11
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-09
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-08
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	7e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 56.6 bits (137), Expect = 2e-11
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 1/93 (1%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
           +D +   PL+ A SN ++  V  LLE NG      +     P+HLA KNGH++++  +L+
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLLE-NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61

Query: 82  KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           K          G   LH   +NG++++VK ++K
Sbjct: 62  KGADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 49.7 bits (119), Expect = 9e-09
 Identities = 31/121 (25%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 2   GNTAFHESL---------FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHS 52
           G T  H +           ++        KD +   PL+ A  N ++  V  LLE     
Sbjct: 7   GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV 66

Query: 53  AIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAI 112
               +     P+HLA +NG++ V+  +LK           G   LH   KNGH+ +VK +
Sbjct: 67  NAR-DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 113 I 113
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 3/85 (3%)

Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
           L+ A  N  +  V  LLE     A  +   T   +HLA +NG+++++  +L+        
Sbjct: 1   LHLAAKNGNLELVKLLLE---KGADVNLGDTDTALHLAARNGNLEIVKLLLEHGADVNAK 57

Query: 90  TNSGYNILHFVVKNGHVNMVKAIIK 114
              G   LH   +NG++ +VK +++
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 37.6 bits (88), Expect = 7e-05
 Identities = 11/51 (21%), Positives = 26/51 (50%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
            +H A  +G ++++  +L+K          G   LH   +NG++ ++K ++
Sbjct: 4   ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 36.3 bits (83), Expect = 0.002
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 7/109 (6%)

Query: 21  TKDWNENIPLYFATSN-----TYIRGVCFLLELNGHSAI--EHNIKTLYPIHLACKNGHV 73
            KD + + PL+ A  N       I     LLE      +    +     P+H A  NG  
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDA 160

Query: 74  KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
            ++  +L+    P    + G   L    KNG + +VK ++        +
Sbjct: 161 DIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLL 209

Length = 235

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	127
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.94
PHA02791	284	ankyrin-like protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
PHA02875	413	ankyrin repeat protein; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02859	209	ankyrin repeat protein; Provisional	99.92
PHA02743	166	Viral ankyrin protein; Provisional	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.92
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02878	477	ankyrin repeat protein; Provisional	99.91
PHA02874	434	ankyrin repeat protein; Provisional	99.91
PHA03095	471	ankyrin-like protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
PHA02874	434	ankyrin repeat protein; Provisional	99.9
PHA03100	480	ankyrin repeat protein; Provisional	99.9
KOG0510	929	consensus Ankyrin repeat protein [General function	99.9
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.9
PHA02859	209	ankyrin repeat protein; Provisional	99.9
PHA02989	494	ankyrin repeat protein; Provisional	99.9
PHA02798	489	ankyrin-like protein; Provisional	99.9
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA03100	480	ankyrin repeat protein; Provisional	99.89
PHA02876	682	ankyrin repeat protein; Provisional	99.89
PHA02884	300	ankyrin repeat protein; Provisional	99.89
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.89
PHA02946	446	ankyin-like protein; Provisional	99.89
PHA03095	471	ankyrin-like protein; Provisional	99.89
KOG0508	615	consensus Ankyrin repeat protein [General function	99.89
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.88
PHA02946	446	ankyin-like protein; Provisional	99.87
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.87
PHA02876	682	ankyrin repeat protein; Provisional	99.87
PHA02989	494	ankyrin repeat protein; Provisional	99.87
PHA02795	437	ankyrin-like protein; Provisional	99.87
KOG0514	452	consensus Ankyrin repeat protein [General function	99.86
PHA02798	489	ankyrin-like protein; Provisional	99.86
PHA02795	437	ankyrin-like protein; Provisional	99.86
KOG0508	615	consensus Ankyrin repeat protein [General function	99.85
KOG0510	929	consensus Ankyrin repeat protein [General function	99.84
PHA02741	169	hypothetical protein; Provisional	99.83
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
PHA02917	661	ankyrin-like protein; Provisional	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.82
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.82
PHA02730	672	ankyrin-like protein; Provisional	99.82
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.81
PHA02730	672	ankyrin-like protein; Provisional	99.81
PHA02917	661	ankyrin-like protein; Provisional	99.81
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.8
PHA02743	166	Viral ankyrin protein; Provisional	99.79
PHA02884	300	ankyrin repeat protein; Provisional	99.79
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.78
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.78
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.75
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.75
PHA02736	154	Viral ankyrin protein; Provisional	99.74
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.74
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.73
PHA02792	631	ankyrin-like protein; Provisional	99.72
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.71
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.71
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.7
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.7
PHA02792	631	ankyrin-like protein; Provisional	99.7
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.69
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.68
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.67
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.66
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.63
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.59
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.58
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.52
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.48
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.46
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.39
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.37
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.31
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.29
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.15
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.14
PF13606	30	Ank_3: Ankyrin repeat	99.12
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.12
PF13606	30	Ank_3: Ankyrin repeat	99.1
KOG0522	560	consensus Ankyrin repeat protein [General function	99.09
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.07
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.07
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.03
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.98
KOG0522	560	consensus Ankyrin repeat protein [General function	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.84
KOG2384	223	consensus Major histocompatibility complex protein	98.78
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.71
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.68
KOG0511	516	consensus Ankyrin repeat protein [General function	98.58
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.58
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.48
KOG0511	516	consensus Ankyrin repeat protein [General function	98.48
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.47
KOG2384	223	consensus Major histocompatibility complex protein	98.43
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.29
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.26
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.25
KOG2505	591	consensus Ankyrin repeat protein [General function	97.84
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.71
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.64
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.62
KOG2505	591	consensus Ankyrin repeat protein [General function	97.5
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	94.91
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	94.46
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	92.18
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	91.99
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	87.85
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	86.25

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=6.2e-32  Score=156.94  Aligned_cols=125  Identities=21%  Similarity=0.139  Sum_probs=101.1

Q ss_pred             CCcchHHHHHHH--------hh--hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhhhhh
Q 044402            1 MGNTAFHESLFI--------IN--RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHLACK   69 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~--~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~   69 (127)
                      +|+||||+||+.        ++  .+.++|.+|..||||||+|+..|+.++|+-|+.+ +++++ ..+..|.|+||+|+.
T Consensus        37 D~Rt~LHwa~S~g~~eiv~fLlsq~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advn-a~tn~G~T~LHyAag  115 (226)
T KOG4412|consen   37 DGRTPLHWACSFGHVEIVYFLLSQPNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVN-ATTNGGQTCLHYAAG  115 (226)
T ss_pred             cCCceeeeeeecCchhHHHHHHhcCCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcc-eecCCCcceehhhhc
Confidence            478888888877        33  3456777888888888888888888888888887 67764 777888888888888


Q ss_pred             cCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhccccccccccc
Q 044402           70 NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDKVV  126 (127)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~  126 (127)
                      .|..+++++|++.|+.++++|..|.||||-|+.-|..+++++|+..+......|++.
T Consensus       116 K~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G  172 (226)
T KOG4412|consen  116 KGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYG  172 (226)
T ss_pred             CChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccC
Confidence            888888888888888888888888888888888888888888887766666666654

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.4e-29  Score=147.25  Aligned_cols=121  Identities=18%  Similarity=0.220  Sum_probs=111.5

Q ss_pred             CCcchHHHHHHH---------hhh-cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhc
Q 044402            1 MGNTAFHESLFI---------INR-VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN   70 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~-~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~   70 (127)
                      .|+||||.|++.         +.+ ++++|..+..|+||||||+..++.++.++|+++|+.+. .+|..++||||-|+..
T Consensus        71 aGWtPlhia~s~g~~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~-~kD~~~qtplHRAAav  149 (226)
T KOG4412|consen   71 AGWTPLHIAASNGNDEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIR-IKDKQGQTPLHRAAAV  149 (226)
T ss_pred             cCCchhhhhhhcCcHHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCc-ccccccCchhHHHHhc
Confidence            489999999998         344 78999999999999999999999999999999999986 8999999999999999


Q ss_pred             CchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           71 GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      |..+++++|+..|+.++.+|..|+||||.|...|+.+....|+++ .++.+..
T Consensus       150 Gklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~ed  202 (226)
T KOG4412|consen  150 GKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDRED  202 (226)
T ss_pred             cchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeecc
Confidence            999999999999999999999999999999999999999999988 5554443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.94  E-value=7.7e-26  Score=143.86  Aligned_cols=115  Identities=19%  Similarity=0.191  Sum_probs=65.0

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCc-hhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNEN-IPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~-t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |+||||+|+..         +..+++++.++..|+ ||||+|+..++.+++++|++.++...  ....|.||||+|+..|
T Consensus        94 G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g  171 (284)
T PHA02791         94 GNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNG  171 (284)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcC
Confidence            44555555544         233444544444442 45555555555555555555433221  1123566666666666


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcH-HHHHHhcCcHHHHHHHHHh-ccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNI-LHFVVKNGHVNMVKAIIKI-SET  118 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~-l~~a~~~~~~~~~~~Ll~~-~~~  118 (127)
                      +.+++++|++.|++++.++..|.|| ||+|+..|+.+++++|+++ .++
T Consensus       172 ~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~i  220 (284)
T PHA02791        172 HVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINI  220 (284)
T ss_pred             CHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            6777777776666666666666655 6777777777777777666 443

>PHA02791 ankyrin-like protein; Provisional

Probab=99.93  E-value=3e-25  Score=141.18  Aligned_cols=111  Identities=16%  Similarity=0.174  Sum_probs=69.8

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCC-ChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL-YPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~a~~~~   71 (127)
                      |.||||.|+..         +..|++++.+|..|.||||+|+..++.+++++|++.+++.. .++..|+ ||||+|+..|
T Consensus        61 ~~TpLh~Aa~~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin-~~~~~g~~TpL~~Aa~~g  139 (284)
T PHA02791         61 NEFPLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLN  139 (284)
T ss_pred             CCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccCCCCCcHHHHHHHHcC
Confidence            45666666654         34556666666666667777666666666666666666654 3444443 5666666666


Q ss_pred             chHHHHHHHhccCCCCccc-CCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVT-NSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.+.+.  .+ ..|.||||+|+..|+.+++++|+++
T Consensus       140 ~~eivk~LL~~~~~~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        140 DVSIVSYFLSEIPST--FDLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             CHHHHHHHHhcCCcc--cccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            666666666654332  12 2356777777777777777777766

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.93  E-value=1.3e-24  Score=145.25  Aligned_cols=117  Identities=19%  Similarity=0.298  Sum_probs=91.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+..         +..|++++.++..|.||||+|+..++.+++++|++.|+++. .++..|+||||+|+..|+
T Consensus       102 g~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~TpL~~A~~~g~  180 (413)
T PHA02875        102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLD-IEDCCGCTPLIIAMAKGD  180 (413)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCC
Confidence            67888888776         45677888888888888888888888888888888887775 677778888888888888


Q ss_pred             hHHHHHHHhccCCCCcccCCC-CcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSG-YNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      .+++++|++.|++++..+..| .||+++|+..|+.+++++|+++ ++++
T Consensus       181 ~eiv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n  229 (413)
T PHA02875        181 IAICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN  229 (413)
T ss_pred             HHHHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcc
Confidence            888888888888887777665 4677778888888888888877 5544

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=2e-24  Score=128.83  Aligned_cols=114  Identities=15%  Similarity=0.166  Sum_probs=102.5

Q ss_pred             CCcchHHHHHHH--------hh-------hcCCCCccccCCchhHHHHHhcCC----HHHHHHHHHhcCCCcccccc-cC
Q 044402            1 MGNTAFHESLFI--------IN-------RVTKWKTKDWNENIPLYFATSNTY----IRGVCFLLELNGHSAIEHNI-KT   60 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~-------~~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~-~~   60 (127)
                      .|.||||+|++.        +.       .+++++.+|..|.||||+|+..++    .+++++|++.|+++. .++. .|
T Consensus        20 ~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin-~~~~~~g   98 (169)
T PHA02741         20 EGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADIN-AQEMLEG   98 (169)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCC-CCCcCCC
Confidence            478999999987        21       146788999999999999999998    588999999999986 5664 89


Q ss_pred             CChhhhhhhcCchHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           61 LYPIHLACKNGHVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        61 ~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +||||+|+..++.+++++|+. .|++++.++..|+|||++|...++.+++++|++.
T Consensus        99 ~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741         99 DTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             CCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHH
Confidence            999999999999999999997 5999999999999999999999999999999977

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.92  E-value=2.1e-24  Score=144.30  Aligned_cols=92  Identities=18%  Similarity=0.265  Sum_probs=58.7

Q ss_pred             ccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHh
Q 044402           23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVK  102 (127)
Q Consensus        23 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  102 (127)
                      +..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus        99 ~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~~-~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~  177 (413)
T PHA02875         99 YKDGMTPLHLATILKKLDIMKLLIARGADPD-IPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMA  177 (413)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            3445666666666666666666666666654 455566666666666666666666666666666666666666666666


Q ss_pred             cCcHHHHHHHHHh
Q 044402          103 NGHVNMVKAIIKI  115 (127)
Q Consensus       103 ~~~~~~~~~Ll~~  115 (127)
                      .|+.+++++|+++
T Consensus       178 ~g~~eiv~~Ll~~  190 (413)
T PHA02875        178 KGDIAICKMLLDS  190 (413)
T ss_pred             cCCHHHHHHHHhC
Confidence            6666666666665

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=6.1e-25  Score=147.38  Aligned_cols=120  Identities=23%  Similarity=0.270  Sum_probs=89.4

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccc-cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKD-WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.|+||+||-+         +.+|+++|... .-+.||||+|+++|+..++.+|+++|+++. ..|..|.+|+|+|+..+
T Consensus        78 g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAdpt-~~D~~G~~~lHla~~~~  156 (600)
T KOG0509|consen   78 GVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGADPT-LKDKQGLTPLHLAAQFG  156 (600)
T ss_pred             CccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCCCc-eecCCCCcHHHHHHHhC
Confidence            66777877776         66777777777 567778888888888888888888888775 67777888888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      +.-.+-||+.+|++++.+|.+|+|||+||+..|....+..|++- +.+....
T Consensus       157 ~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d  208 (600)
T KOG0509|consen  157 HTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTD  208 (600)
T ss_pred             chHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccc
Confidence            88888888877777788888888888888877776656666655 4444443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.92  E-value=6.8e-24  Score=130.29  Aligned_cols=119  Identities=13%  Similarity=0.040  Sum_probs=96.8

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccc-cCCchhHHHHHhc---CCHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKD-WNENIPLYFATSN---TYIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d-~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      .|.||||.|+..           +..|++++.++ ..|.||||+|+..   ++.+++++|+++|+++. ..+..|.||||
T Consensus        50 ~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gadin-~~d~~G~TpLh  128 (209)
T PHA02859         50 LYETPIFSCLEKDKVNVEILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSIT-EEDEDGKNLLH  128 (209)
T ss_pred             cCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCCCC-CcCCCCCCHHH
Confidence            478999988752           56788888886 4789999988754   46889999999999886 78888999999


Q ss_pred             hhhh--cCchHHHHHHHhccCCCCcccCCCCcHHHH-HHhcCcHHHHHHHHHh-ccccc
Q 044402           66 LACK--NGHVKVMVEMLKKQHCPMFVTNSGYNILHF-VVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        66 ~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~-a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +|+.  .++.+++++|++.|++++.+|..|.||||. ++..++.+++++|+++ .+++.
T Consensus       129 ~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        129 MYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             HHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            8875  467899999999999999999999999985 5667888999999988 44443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.92  E-value=5.1e-24  Score=126.66  Aligned_cols=117  Identities=7%  Similarity=-0.033  Sum_probs=102.1

Q ss_pred             CcchHHHHHHH-------------hhhcCCCCccccCCchhHHHHHhcCCHHH---HHHHHHhcCCCccccc-ccCCChh
Q 044402            2 GNTAFHESLFI-------------INRVTKWKTKDWNENIPLYFATSNTYIRG---VCFLLELNGHSAIEHN-IKTLYPI   64 (127)
Q Consensus         2 g~~~lh~a~~~-------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~---~~~ll~~~~~~~~~~~-~~~~t~l   64 (127)
                      +.++||.|++.             +..+..++.+|..|+||||+|+..++.+.   +++|++.|+++. .++ ..|.|||
T Consensus        20 ~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin-~~d~~~g~TpL   98 (166)
T PHA02743         20 EQNTFLRICRTGNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADIN-ARELGTGNTLL   98 (166)
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCC-CCCCCCCCcHH
Confidence            56789999876             12456788899999999999999998654   799999999986 566 5899999


Q ss_pred             hhhhhcCchHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           65 HLACKNGHVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      |+|+..++.+++++|+. .|++++.++..|.||||+|+..++.+++++|+++ .+.+
T Consensus        99 h~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  155 (166)
T PHA02743         99 HIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCD  155 (166)
T ss_pred             HHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            99999999999999995 7999999999999999999999999999999988 4443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=1.9e-24  Score=127.18  Aligned_cols=114  Identities=7%  Similarity=0.006  Sum_probs=98.9

Q ss_pred             CCcchHHHHHHH-----h--hhcC--C-----CCccccCCchhHHHHHhcCCH---HHHHHHHHhcCCCccccc-ccCCC
Q 044402            1 MGNTAFHESLFI-----I--NRVT--K-----WKTKDWNENIPLYFATSNTYI---RGVCFLLELNGHSAIEHN-IKTLY   62 (127)
Q Consensus         1 ~g~~~lh~a~~~-----l--~~~~--~-----~~~~d~~g~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~-~~~~t   62 (127)
                      +|.||||+|++.     +  ..+.  +     +..+|..|.||||+|+..++.   +++++|++.|+++. .++ ..|+|
T Consensus        16 ~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin-~~~~~~g~T   94 (154)
T PHA02736         16 EGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADIN-GKERVFGNT   94 (154)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCcc-ccCCCCCCc
Confidence            489999999999     1  1222  1     224688999999999999986   46889999999986 566 58999


Q ss_pred             hhhhhhhcCchHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           63 PIHLACKNGHVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        63 ~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |||+|+..++.+++++|+. .|++++.++..|.||||+|+..|+.+++++|++.
T Consensus        95 ~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         95 PLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             HHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999997 4899999999999999999999999999999987

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.92  E-value=8.6e-25  Score=146.65  Aligned_cols=113  Identities=21%  Similarity=0.225  Sum_probs=105.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+++         +.+|++++.+|.+|.+|+|.|+.+++...+-|++.++.+++ .+|..|.|||++|+.+|+
T Consensus       112 ~stPLHWAar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d-~~D~~grTpLmwAaykg~  190 (600)
T KOG0509|consen  112 GSTPLHWAARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADID-LRDNNGRTPLMWAAYKGF  190 (600)
T ss_pred             CCCcchHHHHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCC-CcCCCCCCHHHHHHHhcc
Confidence            57999999999         67899999999999999999999999999999999999886 899999999999999999


Q ss_pred             hHHHHHHHhccCCCCccc-CCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVT-NSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ...++.|+..|+++...| .+|.||||||+..|+..+++.|++.
T Consensus       191 ~~~v~~LL~f~a~~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  191 ALFVRRLLKFGASLLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             cHHHHHHHHhcccccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            998999999999998888 9999999999999999999955544

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=142.78  Aligned_cols=98  Identities=20%  Similarity=0.218  Sum_probs=51.5

Q ss_pred             CCCCccccC-CchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCc
Q 044402           17 TKWKTKDWN-ENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYN   95 (127)
Q Consensus        17 ~~~~~~d~~-g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t   95 (127)
                      ++++.+|.. |.||||+|+..++.+++++|++.|+++. ..+..|.||||.|+..++.+++++|++.|++++.+|..|.|
T Consensus       158 adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~T  236 (477)
T PHA02878        158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVN-IPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNT  236 (477)
T ss_pred             CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCC
Confidence            344444444 5555555555555555555555555543 44445555555555555555555555555555555555555


Q ss_pred             HHHHHHhc-CcHHHHHHHHHh
Q 044402           96 ILHFVVKN-GHVNMVKAIIKI  115 (127)
Q Consensus        96 ~l~~a~~~-~~~~~~~~Ll~~  115 (127)
                      |||+|+.. ++.+++++|+++
T Consensus       237 pLh~A~~~~~~~~iv~~Ll~~  257 (477)
T PHA02878        237 PLHISVGYCKDYDILKLLLEH  257 (477)
T ss_pred             HHHHHHHhcCCHHHHHHHHHc
Confidence            55555543 345555555555

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.91  E-value=1.2e-23  Score=142.79  Aligned_cols=117  Identities=19%  Similarity=0.149  Sum_probs=104.2

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhc-C
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN-G   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~-~   71 (127)
                      |.||||+|+..         +..|++++..|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+.. +
T Consensus       168 g~tpLh~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in-~~d~~g~TpLh~A~~~~~  246 (477)
T PHA02878        168 GNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD-ARDKCGNTPLHISVGYCK  246 (477)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHhcC
Confidence            89999999987         56789999999999999999999999999999999999986 7888999999999975 7


Q ss_pred             chHHHHHHHhccCCCCcccC-CCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +.+++++|++.|++++.++. .|.||||+|  .+..+++++|+++ .+++..
T Consensus       247 ~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~  296 (477)
T PHA02878        247 DYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSL  296 (477)
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCc
Confidence            89999999999999988875 799999999  4678899999988 555543

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.91  E-value=2.2e-23  Score=140.12  Aligned_cols=100  Identities=21%  Similarity=0.263  Sum_probs=88.9

Q ss_pred             cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCc
Q 044402           16 VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYN   95 (127)
Q Consensus        16 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t   95 (127)
                      |++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.+++++|++.|++++..+..|.|
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n-~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~t  192 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVN-IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGES  192 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCC
Confidence            45677788889999999999999999999999998885 67888999999999999999999999999999988999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHhc
Q 044402           96 ILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        96 ~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      |||+|+..|+.+++++|++.+
T Consensus       193 pL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        193 PLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             HHHHHHHcCCHHHHHHHHhCC
Confidence            999999999999999999883

>PHA03095 ankyrin-like protein; Provisional

Probab=99.91  E-value=2.4e-23  Score=141.11  Aligned_cols=117  Identities=18%  Similarity=0.097  Sum_probs=106.4

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCCH--HHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTYI--RGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~~--~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      .|.||||.|+..           +..|++++.+|..|.||||+|+..++.  ..+..+++.|.+++ .++..|+||||+|
T Consensus       186 ~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din-~~d~~g~TpLh~A  264 (471)
T PHA03095        186 RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISIN-ARNRYGQTPLHYA  264 (471)
T ss_pred             CCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCC-CcCCCCCCHHHHH
Confidence            478999998865           567899999999999999999999975  57888999999986 7889999999999


Q ss_pred             hhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccc
Q 044402           68 CKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SET  118 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~  118 (127)
                      +..|+.+++++|++.|++++.++..|.|||++|+..|+.++++.|++. ++.
T Consensus       265 ~~~~~~~~v~~LL~~gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~  316 (471)
T PHA03095        265 AVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSA  316 (471)
T ss_pred             HHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCH
Confidence            999999999999999999999999999999999999999999999987 554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=8.2e-24  Score=126.84  Aligned_cols=122  Identities=18%  Similarity=0.169  Sum_probs=109.8

Q ss_pred             CcchHHHHHHH-------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            2 GNTAFHESLFI-------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         2 g~~~lh~a~~~-------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      +++|+.+++.+       ++....+|..|+.|.|||.+|+.+|++++|++|++.|+++. .......++|.+|++.|..+
T Consensus       129 p~s~~slsVhql~L~~~~~~~~n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~-~lgk~resALsLAt~ggytd  207 (296)
T KOG0502|consen  129 PWSPLSLSVHQLHLDVVDLLVNNKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPD-ALGKYRESALSLATRGGYTD  207 (296)
T ss_pred             cCChhhHHHHHHHHHHHHHHhhccccCccccCchHhHHHHhcCchHHHHHHHHcCCChh-hhhhhhhhhHhHHhcCChHH
Confidence            67888888877       33456799999999999999999999999999999999996 66677889999999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccccc
Q 044402           75 VMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISMDK  124 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~~  124 (127)
                      ++++|+.++.+++..|.+|-|||.+|++.++.+|++.|++. .++.+..|.
T Consensus       208 iV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~ds  258 (296)
T KOG0502|consen  208 IVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDS  258 (296)
T ss_pred             HHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCccccccc
Confidence            99999999999999999999999999999999999999998 666666554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.90  E-value=8.8e-23  Score=137.27  Aligned_cols=116  Identities=12%  Similarity=0.130  Sum_probs=105.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCc------------------
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSA------------------   53 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~------------------   53 (127)
                      .|.||||.|+..         +..|++++..+..|.|||++|+..++.+++++|++.|++..                  
T Consensus        34 ~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~  113 (434)
T PHA02874         34 ETTTPLIDAIRSGDAKIVELFIKHGADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDC  113 (434)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHC
Confidence            378999999988         56789999999999999999999999999999998876431                  


Q ss_pred             ----ccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           54 ----IEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        54 ----~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                          ...+..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++.+
T Consensus       114 g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        114 GIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             cCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence                145678999999999999999999999999999999999999999999999999999999884

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.90  E-value=5.5e-23  Score=139.64  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=64.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCC------chhHHHHHhcCC--HHHHHHHHHhcCCCcccccccCCChh
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNE------NIPLYFATSNTY--IRGVCFLLELNGHSAIEHNIKTLYPI   64 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g------~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~l   64 (127)
                      |.||||.|+..         +..|++++..+..|      .||||+|+..++  .+++++|++.|+++. .++..|.|||
T Consensus       176 g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din-~~d~~g~TpL  254 (480)
T PHA03100        176 GYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPIN-IKDVYGFTPL  254 (480)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCC-CCCCCCCCHH
Confidence            45555555544         33445555555555      555555555555  555555555555553 4555566666


Q ss_pred             hhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           65 HLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++
T Consensus       255 ~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~  305 (480)
T PHA03100        255 HYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN  305 (480)
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhc
Confidence            666666666666666666666666666666666666666666666666655

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=3e-23  Score=142.69  Aligned_cols=118  Identities=26%  Similarity=0.330  Sum_probs=108.0

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHH-hcCCCcccccccCCChhhhhhhc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLE-LNGHSAIEHNIKTLYPIHLACKN   70 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~-~~~~~~~~~~~~~~t~l~~a~~~   70 (127)
                      +|.||||+|++.         +..|++++.++.++.||||.|+.+|++.+++.||+ .+....+..|..|.||||+|++.
T Consensus       272 dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~  351 (929)
T KOG0510|consen  272 DGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKS  351 (929)
T ss_pred             cCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhc
Confidence            589999999999         56789999999999999999999999999999999 66666567888999999999999


Q ss_pred             CchHHHHHHHhccCCCC---cccCCCCcHHHHHHhcCcHHHHHHHHHhccc
Q 044402           71 GHVKVMVEMLKKQHCPM---FVTNSGYNILHFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      ||..+++.|++.|+...   ..|.+|.||||.|+..|+..+++.|+.+|..
T Consensus       352 gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~  402 (929)
T KOG0510|consen  352 GHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGAD  402 (929)
T ss_pred             CHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCc
Confidence            99999999999999886   4599999999999999999999999999443

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.90  E-value=8.1e-23  Score=146.00  Aligned_cols=108  Identities=20%  Similarity=0.215  Sum_probs=77.6

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhh---------------------------
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIH---------------------------   65 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~---------------------------   65 (127)
                      +..|++++..|..|+||||+|+..|+.+++++|++.|++++ .++..|+||||                           
T Consensus       545 l~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin-~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~  623 (823)
T PLN03192        545 LKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVH-IRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAG  623 (823)
T ss_pred             HHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCC-CcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCc
Confidence            33455555555556666666666666666666666555553 45555555555                           


Q ss_pred             ----hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           66 ----LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        66 ----~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                          .|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ .+++..
T Consensus       624 ~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~  684 (823)
T PLN03192        624 DLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKA  684 (823)
T ss_pred             hHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCC
Confidence                56666677778888899999999999999999999999999999999998 555443

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.90  E-value=3.1e-22  Score=122.97  Aligned_cols=116  Identities=12%  Similarity=0.058  Sum_probs=98.9

Q ss_pred             CCcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcC--CHHHHHHHHHhcCCCccccc-ccCCChhhhhhh
Q 044402            1 MGNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNT--YIRGVCFLLELNGHSAIEHN-IKTLYPIHLACK   69 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~   69 (127)
                      ++.||||.|+..        +..  .++..|..|.||||+|+..+  +.+++++|++.|+++. ..+ ..|+||||+|+.
T Consensus        20 ~~~~pL~~A~~~~~~~~vk~Li~--~~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn-~~~~~~g~TpLh~a~~   96 (209)
T PHA02859         20 RYCNPLFYYVEKDDIEGVKKWIK--FVNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVN-FKTRDNNLSALHHYLS   96 (209)
T ss_pred             ccCcHHHHHHHhCcHHHHHHHHH--hhhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCC-ccCCCCCCCHHHHHHH
Confidence            367999999998        332  36778999999999999865  8999999999999996 454 579999999876


Q ss_pred             c---CchHHHHHHHhccCCCCcccCCCCcHHHHHHh--cCcHHHHHHHHHh-cccc
Q 044402           70 N---GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVK--NGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        70 ~---~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~Ll~~-~~~~  119 (127)
                      .   ++.+++++|++.|++++.++..|.||||+|+.  .++.+++++|++. .+++
T Consensus        97 ~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin  152 (209)
T PHA02859         97 FNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFL  152 (209)
T ss_pred             hCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcc
Confidence            4   47999999999999999999999999999876  4689999999988 4443

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.90  E-value=1.3e-22  Score=138.27  Aligned_cols=114  Identities=17%  Similarity=0.262  Sum_probs=82.6

Q ss_pred             CcchHHHHHHH-----------hhhcCCCCc-cccCCchhHHHHHhcC----CHHHHHHHHHhcCCCcc-----------
Q 044402            2 GNTAFHESLFI-----------INRVTKWKT-KDWNENIPLYFATSNT----YIRGVCFLLELNGHSAI-----------   54 (127)
Q Consensus         2 g~~~lh~a~~~-----------l~~~~~~~~-~d~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~~-----------   54 (127)
                      |+||||+|+..           +..|++++. .+..|.||||+|+..+    +.+++++|++.|+++..           
T Consensus       145 g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~  224 (494)
T PHA02989        145 GYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLES  224 (494)
T ss_pred             CCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHH
Confidence            66777766532           445666666 4566777777665543    66777777777665321           


Q ss_pred             --------------------------cccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHH
Q 044402           55 --------------------------EHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNM  108 (127)
Q Consensus        55 --------------------------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  108 (127)
                                                .++..|+||||+|+..++.+++++|++.|++++.++..|+||||+|+..++.++
T Consensus       225 ~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~i  304 (494)
T PHA02989        225 FLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDM  304 (494)
T ss_pred             HHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHH
Confidence                                      234458888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHh
Q 044402          109 VKAIIKI  115 (127)
Q Consensus       109 ~~~Ll~~  115 (127)
                      ++.|++.
T Consensus       305 v~~LL~~  311 (494)
T PHA02989        305 LNRILQL  311 (494)
T ss_pred             HHHHHhc
Confidence            8888876

>PHA02798 ankyrin-like protein; Provisional

Probab=99.90  E-value=1.1e-22  Score=138.55  Aligned_cols=118  Identities=15%  Similarity=0.073  Sum_probs=83.3

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCC---HHHHHHHHHhcCCCccc----------
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTY---IRGVCFLLELNGHSAIE----------   55 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~----------   55 (127)
                      .|.||||+|+..            +..|++++.+|..|.||||+|+..++   .+++++|++.|+++...          
T Consensus       108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh  187 (489)
T PHA02798        108 DGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLH  187 (489)
T ss_pred             CcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHH
Confidence            478888888753            45678888888888888888888877   78888888777654211          


Q ss_pred             ------------------------------------------------------------------ccccCCChhhhhhh
Q 044402           56 ------------------------------------------------------------------HNIKTLYPIHLACK   69 (127)
Q Consensus        56 ------------------------------------------------------------------~~~~~~t~l~~a~~   69 (127)
                                                                                        ++..|+||||+|+.
T Consensus       188 ~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~  267 (489)
T PHA02798        188 CYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS  267 (489)
T ss_pred             HHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH
Confidence                                                                              22346677777777


Q ss_pred             cCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccc
Q 044402           70 NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SET  118 (127)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~  118 (127)
                      .++.+++++|++.|++++.++..|+|||++|+..++.++++.|++. ++.
T Consensus       268 ~~~~~~v~~LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~  317 (489)
T PHA02798        268 HNNRKIFEYLLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKKPNK  317 (489)
T ss_pred             cCcHHHHHHHHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCH
Confidence            7777777777777777777777777777777777777777777665 443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=1.4e-22  Score=141.85  Aligned_cols=118  Identities=17%  Similarity=0.161  Sum_probs=102.1

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCC--HHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTY--IRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      .|.||||.|+..           +..|++++.+|..|.||||+|+..++  .+++++|++.|+++. .++..|+||||.|
T Consensus       176 ~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN-~kD~~G~TPLh~A  254 (764)
T PHA02716        176 TGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMD-MKCVNGMSPIMTY  254 (764)
T ss_pred             CCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence            388999987532           56789999999999999999999995  589999999999996 7889999999865


Q ss_pred             -------------------------------------hhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHh--cCcHHH
Q 044402           68 -------------------------------------CKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVK--NGHVNM  108 (127)
Q Consensus        68 -------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~  108 (127)
                                                           +..|+.+++++|++.|++++.+|..|+||||+|+.  .++.++
T Consensus       255 i~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH~Aaa~~~~~~eI  334 (764)
T PHA02716        255 IINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLHQYILRHNISTDI  334 (764)
T ss_pred             HHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHHHHHHHhCCCchH
Confidence                                                 34578899999999999999999999999999764  467899


Q ss_pred             HHHHHHh-cccc
Q 044402          109 VKAIIKI-SETN  119 (127)
Q Consensus       109 ~~~Ll~~-~~~~  119 (127)
                      +++|++. .+++
T Consensus       335 VklLLe~GADIN  346 (764)
T PHA02716        335 IKLLHEYGNDLN  346 (764)
T ss_pred             HHHHHHcCCCCc
Confidence            9999988 4443

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.7e-22  Score=137.25  Aligned_cols=117  Identities=20%  Similarity=0.269  Sum_probs=94.6

Q ss_pred             CcchHHH-----HHHH---------hhhcCCCCccccCCchhHHHHH--hcCCHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            2 GNTAFHE-----SLFI---------INRVTKWKTKDWNENIPLYFAT--SNTYIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         2 g~~~lh~-----a~~~---------l~~~~~~~~~d~~g~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      |.||||.     |+..         +..|++++..|..|.||||+|+  ..++.+++++|++.|+++. ..+..|.||||
T Consensus        68 ~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~-~~~~~g~t~L~  146 (480)
T PHA03100         68 NSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVN-IKNSDGENLLH  146 (480)
T ss_pred             CcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCC-ccCCCCCcHHH
Confidence            5678888     7666         4567778888888888888888  8888888888888888775 67777888888


Q ss_pred             hhhhcC--chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           66 LACKNG--HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        66 ~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +|+..+  +.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++
T Consensus       147 ~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~  203 (480)
T PHA03100        147 LYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADIN  203 (480)
T ss_pred             HHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCcc
Confidence            888888  88888888888888888888888888888888888888888877 4443

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.89  E-value=1.9e-22  Score=141.92  Aligned_cols=119  Identities=12%  Similarity=0.181  Sum_probs=102.9

Q ss_pred             CcchHHHHHHH----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||+|+..          +..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..+.||||+|+..+
T Consensus       341 g~TpLh~A~~~~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~-~~~~~g~T~Lh~A~~~~  419 (682)
T PHA02876        341 YITPLHQASTLDRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE-ALSQKIGTALHFALCGT  419 (682)
T ss_pred             CCcHHHHHHHhCCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc-ccCCCCCchHHHHHHcC
Confidence            67888888864          56788999999999999999999999999999999999886 67788899999998765


Q ss_pred             c-hHHHHHHHhccCCCCcccCCCCcHHHHHHhcC-cHHHHHHHHHh-cccccc
Q 044402           72 H-VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG-HVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        72 ~-~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~-~~~~~~~Ll~~-~~~~~~  121 (127)
                      . ..++++|++.|++++.+|..|+||||+|+..+ ..+++++|++. ++++..
T Consensus       420 ~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             CHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCC
Confidence            4 56789999999999999999999999999877 68999999988 555543

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.89  E-value=3e-22  Score=127.85  Aligned_cols=107  Identities=10%  Similarity=0.034  Sum_probs=91.1

Q ss_pred             Ccch-HHHHHHH---------hhhcCCCCccc----cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            2 GNTA-FHESLFI---------INRVTKWKTKD----WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~-lh~a~~~---------l~~~~~~~~~d----~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      |+++ ||.|+..         +..|++++.++    ..|.||||+|+..++.+++++|+++|+++....+..|.||||.|
T Consensus        32 ~~~~lL~~A~~~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~A  111 (300)
T PHA02884         32 CIANILYSSIKFHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYIS  111 (300)
T ss_pred             CCCHHHHHHHHcCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHH
Confidence            4555 5555553         67889999874    58999999999999999999999999999622356799999999


Q ss_pred             hhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHH
Q 044402           68 CKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNM  108 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  108 (127)
                      +..++.+++++|+..|++++.++..|.||+|+|+..+..++
T Consensus       112 a~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~  152 (300)
T PHA02884        112 VLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFL  152 (300)
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhH
Confidence            99999999999999999999999999999999998654333

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.89  E-value=1.7e-22  Score=141.31  Aligned_cols=119  Identities=15%  Similarity=0.075  Sum_probs=103.3

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccccCCchhHHHH------------------------------------
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKDWNENIPLYFA------------------------------------   33 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a------------------------------------   33 (127)
                      .|.||||+|+..           +..|++++.+|..|.||||+|                                    
T Consensus       211 ~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~  290 (764)
T PHA02716        211 HLITPLHTYLITGNVCASVIKKIIELGGDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYIT  290 (764)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHH
Confidence            489999999875           567999999999999999975                                    


Q ss_pred             -HhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhh--cCchHHHHHHHhccCCCCcccCCCCcHHHHHHh--------
Q 044402           34 -TSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACK--NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVK--------  102 (127)
Q Consensus        34 -~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--------  102 (127)
                       +..++.+++++|++.|+++. .++..|+||||+|+.  .++.+++++|++.|++++.+|..|+||||+|+.        
T Consensus       291 AA~~g~leiVklLLe~GAdIN-~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~l  369 (764)
T PHA02716        291 LARNIDISVVYSFLQPGVKLH-YKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNIL  369 (764)
T ss_pred             HHHcCCHHHHHHHHhCCCcee-ccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccc
Confidence             45578899999999999986 789999999999764  468999999999999999999999999999865        


Q ss_pred             ------cCcHHHHHHHHHh-ccccc
Q 044402          103 ------NGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus       103 ------~~~~~~~~~Ll~~-~~~~~  120 (127)
                            .++.+++++|+++ .+++.
T Consensus       370 d~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        370 DPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             cccccccChHHHHHHHHHCCCCCCC
Confidence                  3689999999998 55444

>PHA02946 ankyin-like protein; Provisional

Probab=99.89  E-value=2.5e-22  Score=135.22  Aligned_cols=52  Identities=19%  Similarity=0.310  Sum_probs=31.4

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCC--HHHHHHHHHhcCCCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTY--IRGVCFLLELNGHSA   53 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~   53 (127)
                      |.||||+|+..         +..|++++.+|..|+||||+|+..++  .+++++|++.|+++.
T Consensus        72 G~TpLh~Aa~~g~~eiv~lLL~~GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin  134 (446)
T PHA02946         72 GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN  134 (446)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc
Confidence            56666666655         44556666666666666666655442  555666666665543

>PHA03095 ankyrin-like protein; Provisional

Probab=99.89  E-value=5.6e-22  Score=134.44  Aligned_cols=118  Identities=17%  Similarity=0.195  Sum_probs=103.4

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcC-CHHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNT-YIRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      .|.||||.|+..            +..|++++.+|..|.||||+|+..+ +.+++++|++.|+++. ..+..|.||||+|
T Consensus        46 ~g~t~Lh~a~~~~~~~~~~iv~~Ll~~Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in-~~~~~g~tpLh~a  124 (471)
T PHA03095         46 YGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVN-AKDKVGRTPLHVY  124 (471)
T ss_pred             CCCCHHHHHHHhcCCChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCC-CCCCCCCCHHHHH
Confidence            378999999874            5678999999999999999999999 5999999999999986 7888899999999


Q ss_pred             h--hcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcC--cHHHHHHHHHh-cccc
Q 044402           68 C--KNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG--HVNMVKAIIKI-SETN  119 (127)
Q Consensus        68 ~--~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~~~~~~Ll~~-~~~~  119 (127)
                      +  ..++.+++++|++.|++++..+..|.||||+++..+  ..+++++|++. .+..
T Consensus       125 ~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~  181 (471)
T PHA03095        125 LSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVY  181 (471)
T ss_pred             hhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCc
Confidence            9  557889999999999999999999999999988766  58899999988 4433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.89  E-value=1.1e-22  Score=133.25  Aligned_cols=114  Identities=19%  Similarity=0.245  Sum_probs=101.1

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.+||-.|+.-         +.+|+.+|.....+.|||..||.-|++++++||+++++++. ..++.|.|+|++||..|+
T Consensus        84 gappLWaAsaAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~-IanrhGhTcLmIa~ykGh  162 (615)
T KOG0508|consen   84 GAPPLWAASAAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPE-IANRHGHTCLMIACYKGH  162 (615)
T ss_pred             CCchhhHHhccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCc-ccccCCCeeEEeeeccCc
Confidence            55665544333         56788899888888899999999999999999999999996 899999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+++++|++.|++++.++..|+|+||.+++.|+.+++++|+.++
T Consensus       163 ~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~g  206 (615)
T KOG0508|consen  163 VDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHG  206 (615)
T ss_pred             hHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCC
Confidence            99999999999999999999999999999999999999999873

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.88  E-value=2.1e-21  Score=104.44  Aligned_cols=86  Identities=24%  Similarity=0.374  Sum_probs=78.0

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMV  109 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  109 (127)
                      ||+|++.++.+++++|++.+.+.. .    |.||||+|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~-~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADIN-L----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTT-S----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCC-C----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHH
Confidence            799999999999999999887764 2    88999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh-ccccc
Q 044402          110 KAIIKI-SETNI  120 (127)
Q Consensus       110 ~~Ll~~-~~~~~  120 (127)
                      ++|+++ .+++.
T Consensus        76 ~~Ll~~g~~~~~   87 (89)
T PF12796_consen   76 KLLLEHGADVNI   87 (89)
T ss_dssp             HHHHHTTT-TTS
T ss_pred             HHHHHcCCCCCC
Confidence            999998 55543

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02946 ankyin-like protein; Provisional

Probab=99.87  E-value=3.7e-21  Score=129.55  Aligned_cols=112  Identities=17%  Similarity=0.128  Sum_probs=96.6

Q ss_pred             cchHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            3 NTAFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         3 ~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .++||.++..           +..|++++.+|..|.||||+|+..++.+++++|+++|+++. .++..|.||||+|+..+
T Consensus        38 ~~~Lh~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin-~~d~~g~TpLh~A~~~~  116 (446)
T PHA02946         38 YHILHAYCGIKGLDERFVEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPN-ACDKQHKTPLYYLSGTD  116 (446)
T ss_pred             ChHHHHHHHhcCCCHHHHHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcC
Confidence            4788877642           66899999999999999999999999999999999999996 78999999999998765


Q ss_pred             --chHHHHHHHhccCCCCc-ccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           72 --HVKVMVEMLKKQHCPMF-VTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        72 --~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                        ..+++++|++.|++++. .+..|.|||+ |+..++.+++++|++.+
T Consensus       117 ~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g  163 (446)
T PHA02946        117 DEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG  163 (446)
T ss_pred             CchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc
Confidence              47889999999999974 5788889987 55667888888888773

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.87  E-value=5.8e-22  Score=141.90  Aligned_cols=116  Identities=22%  Similarity=0.264  Sum_probs=105.2

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.+++|.|...         +.+|++.+.++..|.||||.|+.+|+.++|++|+++|++.. .++..|+||||.||..|+
T Consensus       507 ~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~-ak~~~G~TPLH~Aa~~G~  585 (1143)
T KOG4177|consen  507 GLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVN-AKDKLGYTPLHQAAQQGH  585 (1143)
T ss_pred             ccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhCCcccc-ccCCCCCChhhHHHHcCh
Confidence            44566666555         56788999999999999999999999999999999999996 678999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhccc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      .+++.+|+++|++++..+.+|.|||++|+..|+.++++.|+..+..
T Consensus       586 ~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~  631 (1143)
T KOG4177|consen  586 NDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTAT  631 (1143)
T ss_pred             HHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCc
Confidence            9999999999999999999999999999999999999999987444

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.87  E-value=2.8e-21  Score=136.10  Aligned_cols=117  Identities=15%  Similarity=0.244  Sum_probs=90.8

Q ss_pred             CcchHHHHHHH----------hhhcCCCCccccCCchhHHHHHhcC-CHHHHHHHHHhcCCCcccccccCCChhhhhhhc
Q 044402            2 GNTAFHESLFI----------INRVTKWKTKDWNENIPLYFATSNT-YIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN   70 (127)
Q Consensus         2 g~~~lh~a~~~----------l~~~~~~~~~d~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~   70 (127)
                      |.||||+|+..          +..|++++.+|..|.||||+|+..| ..+.+++|+..|+++. ..+..|.||||+|+..
T Consensus       273 g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin-~~d~~g~TpLh~A~~~  351 (682)
T PHA02876        273 KNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVN-AADRLYITPLHQASTL  351 (682)
T ss_pred             CCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCC-CcccCCCcHHHHHHHh
Confidence            77888888865          4567788888888888888888888 4778888888888775 6777788888888774


Q ss_pred             -CchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           71 -GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        71 -~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                       ++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++. .+++
T Consensus       352 ~~~~~iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad~~  402 (682)
T PHA02876        352 DRNKDIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIE  402 (682)
T ss_pred             CCcHHHHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc
Confidence             467777788888888888888888888888888888888888876 4433

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.87  E-value=4.2e-21  Score=130.95  Aligned_cols=103  Identities=16%  Similarity=0.138  Sum_probs=56.9

Q ss_pred             hhhcCCC-CccccCCchhHHHHHhc--CCHHHHHHHHHhcCCCcccccccCCChhhhhhhc----CchHHHHHHHhccCC
Q 044402           13 INRVTKW-KTKDWNENIPLYFATSN--TYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN----GHVKVMVEMLKKQHC   85 (127)
Q Consensus        13 l~~~~~~-~~~d~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~----~~~~~~~~l~~~~~~   85 (127)
                      +..|+++ +.+|..|.||||+|+..  ++.+++++|++.|+++....+..|.||||+++..    ++.+++++|++.|++
T Consensus       131 l~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~  210 (494)
T PHA02989        131 LSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVN  210 (494)
T ss_pred             HHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCC
Confidence            3445555 55556666666655432  3556666666666655422344556666655443    255666666665554


Q ss_pred             CCc--------------------------------------ccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           86 PMF--------------------------------------VTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        86 ~~~--------------------------------------~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ++.                                      +|..|+||||+|+..|+.+++++|+++
T Consensus       211 vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~  278 (494)
T PHA02989        211 IETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAKVDNYEAFNYLLKL  278 (494)
T ss_pred             ccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHc
Confidence            422                                      233466666666666666666666665

>PHA02795 ankyrin-like protein; Provisional

Probab=99.87  E-value=4.1e-21  Score=127.29  Aligned_cols=93  Identities=12%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcC-
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG-  104 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~-  104 (127)
                      +.+++|.|+..++.+++++|+++|+++. .++..|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..| 
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GADIN-~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~  266 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIEDIN-QLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGS  266 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcCCcC-cCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCC
Confidence            4556666666666677777777776664 67777888888888888888888888888888888888888888888777 


Q ss_pred             -------cHHHHHHHHHh-cccc
Q 044402          105 -------HVNMVKAIIKI-SETN  119 (127)
Q Consensus       105 -------~~~~~~~Ll~~-~~~~  119 (127)
                             +.+++++|+++ ++.+
T Consensus       267 ~~~~~~~~~eIvelLL~~gadI~  289 (437)
T PHA02795        267 VIARRETHLKILEILLREPLSID  289 (437)
T ss_pred             cccccccHHHHHHHHHhCCCCCC
Confidence                   35788888877 4443

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.86  E-value=5.3e-22  Score=126.44  Aligned_cols=118  Identities=19%  Similarity=0.233  Sum_probs=85.3

Q ss_pred             CCcchHHHHHHH--------hh-h-cCCCCccccCCchhHHHHHhcC-----CHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            1 MGNTAFHESLFI--------IN-R-VTKWKTKDWNENIPLYFATSNT-----YIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~-~-~~~~~~~d~~g~t~l~~a~~~~-----~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      .|+|+||+++..        |+ . .++++.+++-|.||++.++...     +.++|..|+..|.... +....|+|+|+
T Consensus       267 NGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNa-KAsQ~gQTALM  345 (452)
T KOG0514|consen  267 NGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGDVNA-KASQHGQTALM  345 (452)
T ss_pred             CCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccCcch-hhhhhcchhhh
Confidence            377888887777        22 2 2567777777777777765433     4566777776655433 55667888888


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhcccc
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETN  119 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  119 (127)
                      +|+.+|++++++.|+..|++++.+|.+|.|+|+.|+.+|+.|+++.|+..+..+
T Consensus       346 LAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd  399 (452)
T KOG0514|consen  346 LAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCD  399 (452)
T ss_pred             hhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCccc
Confidence            888888888888888888888888888888888888888888888888764433

>PHA02798 ankyrin-like protein; Provisional

Probab=99.86  E-value=4.7e-21  Score=130.60  Aligned_cols=106  Identities=19%  Similarity=0.307  Sum_probs=76.3

Q ss_pred             hhhcCCCCccccCCchhHHHHHhc-----CCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC---chHHHHHHHhccC
Q 044402           13 INRVTKWKTKDWNENIPLYFATSN-----TYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG---HVKVMVEMLKKQH   84 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~---~~~~~~~l~~~~~   84 (127)
                      +..|++++.+|..|.||||.++.+     ++.+++++|++.|++++ .++..|.||||+|+..+   +.+++++|++.|+
T Consensus        58 l~~Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN-~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Ga  136 (489)
T PHA02798         58 INLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADIN-KKNSDGETPLYCLLSNGYINNLEILLFMIENGA  136 (489)
T ss_pred             HHCCCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCC-CCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCC
Confidence            556777777777777777777654     45677777777777775 66777777777777654   5677777777777


Q ss_pred             CCCcccCCCCcHHHHHHhcCc---HHHHHHHHHh-cccc
Q 044402           85 CPMFVTNSGYNILHFVVKNGH---VNMVKAIIKI-SETN  119 (127)
Q Consensus        85 ~~~~~~~~~~t~l~~a~~~~~---~~~~~~Ll~~-~~~~  119 (127)
                      +++.++..|.||||+|+..++   .+++++|+++ .+++
T Consensus       137 dvn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin  175 (489)
T PHA02798        137 DTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDIN  175 (489)
T ss_pred             CccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcc
Confidence            777777777777777777766   7777777776 4443

>PHA02795 ankyrin-like protein; Provisional

Probab=99.86  E-value=1.5e-20  Score=124.59  Aligned_cols=118  Identities=9%  Similarity=-0.018  Sum_probs=102.7

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccc-----cccCCChh
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH-----NIKTLYPI   64 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~-----~~~~~t~l   64 (127)
                      +++|+||.++..           +..|++++.++  +.||+|+|+..++.+++++|+++|++..+..     +..+.+++
T Consensus       115 ~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~~~--~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l  192 (437)
T PHA02795        115 SVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYKIE--CLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRG  192 (437)
T ss_pred             cccHHHHHHHHhcCCCHHHHHHHHHCCCCCCCCC--CCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchh
Confidence            368999999994           77899998854  4899999999999999999999998543222     13477899


Q ss_pred             hhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           65 HLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |.+...++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus       193 ~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~  249 (437)
T PHA02795        193 FLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNA  249 (437)
T ss_pred             HHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999 44443

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.85  E-value=1.3e-21  Score=128.27  Aligned_cols=111  Identities=16%  Similarity=0.215  Sum_probs=103.2

Q ss_pred             cchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCch
Q 044402            3 NTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV   73 (127)
Q Consensus         3 ~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   73 (127)
                      .|||..||..         +.+++++++.|+.|.|+||+||..||.+++++|++.|++++ .++..|+|+||.|+..|++
T Consensus       118 StPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn-~ks~kGNTALH~caEsG~v  196 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVN-AKSYKGNTALHDCAESGSV  196 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcc-hhcccCchHHHhhhhcccH
Confidence            4899999887         67889999999999999999999999999999999999996 7899999999999999999


Q ss_pred             HHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           74 KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        74 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +++++|+..|+-++. |.+|.|||..|+..|+.+++++|++.
T Consensus       197 divq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~  237 (615)
T KOG0508|consen  197 DIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQC  237 (615)
T ss_pred             HHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcC
Confidence            999999999877765 66799999999999999999999953

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.84  E-value=3.7e-20  Score=127.70  Aligned_cols=100  Identities=19%  Similarity=0.215  Sum_probs=66.8

Q ss_pred             hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcc--------------cccccCCChhhhhhhcCchHHHHHHH
Q 044402           15 RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAI--------------EHNIKTLYPIHLACKNGHVKVMVEML   80 (127)
Q Consensus        15 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--------------~~~~~~~t~l~~a~~~~~~~~~~~l~   80 (127)
                      ++..++..+..+.+|||.|+..|++++++..|+++.....              ..|.+|.||||+|++.|++++++.|+
T Consensus       214 r~~~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll  293 (929)
T KOG0510|consen  214 RQTHINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLL  293 (929)
T ss_pred             hhcccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHH
Confidence            3455666666666666666666666666666666544322              23556677777777777777777777


Q ss_pred             hccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           81 KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        81 ~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      ..|++++.++.++.||||.|+.+|+...++.|++
T Consensus       294 ~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  294 GFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             HcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            7777777777777777777777777777777776

>PHA02741 hypothetical protein; Provisional

Probab=99.83  E-value=1e-19  Score=108.58  Aligned_cols=96  Identities=8%  Similarity=0.005  Sum_probs=85.1

Q ss_pred             CCccccCCchhHHHHHhcCCHHHHHHHHHh------cCCCcccccccCCChhhhhhhcCc----hHHHHHHHhccCCCCc
Q 044402           19 WKTKDWNENIPLYFATSNTYIRGVCFLLEL------NGHSAIEHNIKTLYPIHLACKNGH----VKVMVEMLKKQHCPMF   88 (127)
Q Consensus        19 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~------~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~   88 (127)
                      ++.+|..|.||||+|+..|+.++++.|+..      +.+.. .++..|+||||+|+..|+    .+++++|++.|++++.
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~   92 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINA   92 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCC
Confidence            456788999999999999999999998653      35553 678889999999999998    5899999999999999


Q ss_pred             ccC-CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           89 VTN-SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        89 ~~~-~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ++. .|+||||+|+..++.+++++|++.
T Consensus        93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~  120 (169)
T PHA02741         93 QEMLEGDTALHLAAHRRDHDLAEWLCCQ  120 (169)
T ss_pred             CCcCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            885 999999999999999999999974

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.83  E-value=3e-20  Score=111.67  Aligned_cols=120  Identities=20%  Similarity=0.145  Sum_probs=108.1

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|+|||.+|+.+         +..|++++..-+...++|..|++.|..++|+.|+..+.+++ .-+.+|.|||-+|++.+
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~vdVN-vyDwNGgTpLlyAvrgn  237 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTREVDVN-VYDWNGGTPLLYAVRGN  237 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCCcc-eeccCCCceeeeeecCC
Confidence            589999999998         66789999999999999999999999999999999999996 88999999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      +.++++.|+..|++++..+..|.+++..|+..|+. +++.+++. ....++.
T Consensus       238 hvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~  288 (296)
T KOG0502|consen  238 HVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQD  288 (296)
T ss_pred             hHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhc
Confidence            99999999999999999999999999999999998 55555554 5444443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=9.4e-20  Score=105.92  Aligned_cols=97  Identities=22%  Similarity=0.191  Sum_probs=88.5

Q ss_pred             CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHH
Q 044402           18 KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNIL   97 (127)
Q Consensus        18 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l   97 (127)
                      .+|.+|.+|.||||-|+.+||.++++.|+..|+++. .+...||||||.||.-++.+++.+|++.|++++.......|||
T Consensus        89 ~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~-a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpL  167 (228)
T KOG0512|consen   89 HVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKE-AKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPL  167 (228)
T ss_pred             cccccccccccHHHHHHhcCchHHHHHHHHccCCcc-cccccCccchhhhhcccchhHHHHHHhccCcccccccccchhh
Confidence            499999999999999999999999999999999996 7888999999999999999999999999999999999999999


Q ss_pred             HHHHhcCcHH-HHHHHHHh
Q 044402           98 HFVVKNGHVN-MVKAIIKI  115 (127)
Q Consensus        98 ~~a~~~~~~~-~~~~Ll~~  115 (127)
                      |+|+...... .+++|+..
T Consensus       168 hlaa~~rn~r~t~~~Ll~d  186 (228)
T KOG0512|consen  168 HLAAGNRNSRDTLELLLHD  186 (228)
T ss_pred             HHhhcccchHHHHHHHhhc
Confidence            9999777644 46666644

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=7.4e-20  Score=116.78  Aligned_cols=117  Identities=15%  Similarity=0.147  Sum_probs=105.8

Q ss_pred             CcchHHHHHHH-------------hhhcCCCCccc-cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            2 GNTAFHESLFI-------------INRVTKWKTKD-WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~-------------l~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      |+||+++|+.-             |-+-.++|.+. ..|.|+|+.|..+|+.++++.||..|++++ .+|..|.|+|+.|
T Consensus       302 GYtpiMLaALA~lk~~~d~~vV~~LF~mgnVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAdVN-iQDdDGSTALMCA  380 (452)
T KOG0514|consen  302 GYTPVMLAALAKLKQPADRTVVERLFKMGDVNAKASQHGQTALMLAVSHGRVDMVKALLACGADVN-IQDDDGSTALMCA  380 (452)
T ss_pred             cccHHHHHHHHhhcchhhHHHHHHHHhccCcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCCCc-cccCCccHHHhhh
Confidence            78999998876             55668899976 559999999999999999999999999996 8999999999999


Q ss_pred             hhcCchHHHHHHHhc-cCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhcccc
Q 044402           68 CKNGHVKVMVEMLKK-QHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETN  119 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~  119 (127)
                      |.+||+|++++|+.. ++++.+.|.+|.|+|.+|...|+.|+.-.|..+-++.
T Consensus       381 ~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~~n~~  433 (452)
T KOG0514|consen  381 AEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAHMNIK  433 (452)
T ss_pred             hhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHHHHhh
Confidence            999999999999886 7888999999999999999999999999998764433

>PHA02917 ankyrin-like protein; Provisional

Probab=99.83  E-value=1.6e-19  Score=126.23  Aligned_cols=116  Identities=17%  Similarity=0.165  Sum_probs=94.4

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCCHH----HHHHHHHhcCCCcccccccCCChh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTYIR----GVCFLLELNGHSAIEHNIKTLYPI   64 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~----~~~~ll~~~~~~~~~~~~~~~t~l   64 (127)
                      +|.||||+|+..            +..|++++.++..|+||||+|+..++.+    +++.|++.+.... ..+  ..+++
T Consensus        31 ~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n-~~~--~~~~~  107 (661)
T PHA02917         31 FKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSN-IND--FNIFS  107 (661)
T ss_pred             CCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCC-CCC--cchHH
Confidence            489999997444            6788999999999999999999999855    4567777543322 222  23677


Q ss_pred             hhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHH--HhcCcHHHHHHHHHh-cccc
Q 044402           65 HLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFV--VKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a--~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.|+..++.+++++|++.|++++.+|..|+|||+.+  +..|+.+++++|+++ .+++
T Consensus       108 ~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn  165 (661)
T PHA02917        108 YMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL  165 (661)
T ss_pred             HHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc
Confidence            889999999999999999999999999999999954  457899999999999 5554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.82  E-value=7.8e-19  Score=99.23  Aligned_cols=112  Identities=28%  Similarity=0.364  Sum_probs=92.0

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+.+.+.++..|.+|+++|+..+..++++++++.+.... ..+..+.||+|+|+..+
T Consensus         6 ~g~t~l~~a~~~~~~~~i~~li~~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~~l~~a~~~~   84 (126)
T cd00204           6 DGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVN-ARDKDGNTPLHLAARNG   84 (126)
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHHHcC
Confidence            478888888887         34455567788888889999988888888888888887664 56677888999998888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII  113 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  113 (127)
                      +.+++++|+..+.+.+..+..+.||++.|...++.+++++|+
T Consensus        85 ~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          85 NLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             cHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            888999988888888888888889999888888888888764

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.82  E-value=7.1e-20  Score=131.39  Aligned_cols=120  Identities=20%  Similarity=0.222  Sum_probs=91.7

Q ss_pred             CcchHHHHHHH----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHh-----------------------
Q 044402            2 GNTAFHESLFI----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLEL-----------------------   48 (127)
Q Consensus         2 g~~~lh~a~~~----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-----------------------   48 (127)
                      |+||+|.|+..          +..+.+++.....|.||||.|+..||.+.+..+++.                       
T Consensus       440 G~T~lhvaa~~g~~~~~~~~l~~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~  519 (1143)
T KOG4177|consen  440 GYTPLHVAAKKGRYLQIARLLLQYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT  519 (1143)
T ss_pred             CCChhhhhhhcccHhhhhhhHhhcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh
Confidence            55666665554          334455555556666666666666666555555554                       


Q ss_pred             ----------cCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cc
Q 044402           49 ----------NGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SE  117 (127)
Q Consensus        49 ----------~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~  117 (127)
                                |.+.. .+...+.||||.|+..|++++|++|++.|++++.+++.|+||||.|+..|+.++++.|+++ .+
T Consensus       520 v~~~~~l~~~ga~v~-~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~  598 (1143)
T KOG4177|consen  520 VKVAKILLEHGANVD-LRTGRGYTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS  598 (1143)
T ss_pred             HHHHHHHhhcCCcee-hhcccccchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCC
Confidence                      44453 5777899999999999999999999999999999999999999999999999999999999 55


Q ss_pred             ccccc
Q 044402          118 TNISM  122 (127)
Q Consensus       118 ~~~~~  122 (127)
                      ++..+
T Consensus       599 vna~d  603 (1143)
T KOG4177|consen  599 VNAAD  603 (1143)
T ss_pred             CCccc
Confidence            55443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.82  E-value=3.2e-19  Score=123.41  Aligned_cols=117  Identities=9%  Similarity=0.021  Sum_probs=94.0

Q ss_pred             CCcchHHHHHHH-------------hhhcC--CCCccccCCchhHHH---HHhcC---------CHHHHHHHHHhcCCCc
Q 044402            1 MGNTAFHESLFI-------------INRVT--KWKTKDWNENIPLYF---ATSNT---------YIRGVCFLLELNGHSA   53 (127)
Q Consensus         1 ~g~~~lh~a~~~-------------l~~~~--~~~~~d~~g~t~l~~---a~~~~---------~~~~~~~ll~~~~~~~   53 (127)
                      .|.||||.|+..             +.+|+  +++.+|..|.||||.   +...+         ..+++++|+++|+++.
T Consensus       377 ~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs~GADIN  456 (672)
T PHA02730        377 DNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSKYMDDID  456 (672)
T ss_pred             CCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHhcccchh
Confidence            478999988653             44665  588889999999984   33222         2356899999999885


Q ss_pred             ccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccC-CCCcHHHHHHhc--CcHHHHHHHHHh-ccc
Q 044402           54 IEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN-SGYNILHFVVKN--GHVNMVKAIIKI-SET  118 (127)
Q Consensus        54 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~--~~~~~~~~Ll~~-~~~  118 (127)
                       .++..|+||||+|+..++.+++++|++.|++++.++. .|.||+|+|+..  ++.++++.|+++ +..
T Consensus       457 -akD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~ga~i  524 (672)
T PHA02730        457 -MIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYHPTL  524 (672)
T ss_pred             -ccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcCCCH
Confidence             7888999999999999999999999999999999886 589999999874  688999999988 443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.81  E-value=1.3e-19  Score=113.19  Aligned_cols=103  Identities=22%  Similarity=0.293  Sum_probs=88.6

Q ss_pred             CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcH
Q 044402           17 TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNI   96 (127)
Q Consensus        17 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~   96 (127)
                      -+.|.-|..|.+|||+||..||..+++.|++.|+.++ ..+....||||+|+.+||.++++.|+++.++++..+..|+||
T Consensus        25 hdln~gddhgfsplhwaakegh~aivemll~rgarvn-~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntp  103 (448)
T KOG0195|consen   25 HDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVN-STNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTP  103 (448)
T ss_pred             cccccccccCcchhhhhhhcccHHHHHHHHhcccccc-cccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCc
Confidence            5678888899999999999999999999999998885 666677889999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           97 LHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        97 l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      ||+||.-|+-.+++-|+.. ..+++
T Consensus       104 lhyacfwgydqiaedli~~ga~v~i  128 (448)
T KOG0195|consen  104 LHYACFWGYDQIAEDLISCGAAVNI  128 (448)
T ss_pred             hhhhhhhcHHHHHHHHHhccceeee
Confidence            9999999988888888877 44443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.81  E-value=4.2e-19  Score=122.84  Aligned_cols=115  Identities=14%  Similarity=0.073  Sum_probs=87.1

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcC--CHHHHHHHHHhcCCCcc-cccccCCChhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNT--YIRGVCFLLELNGHSAI-EHNIKTLYPIH   65 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~-~~~~~~~t~l~   65 (127)
                      .|+||||+|+..            +..|++++.+|..|.||||+|+..+  +.+++++|++.|++... ..+..+.+||+
T Consensus        40 ~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~~~~~d~~l~  119 (672)
T PHA02730         40 RGNNALHCYVSNKCDTDIKIVRLLLSRGVERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELTSNINDFDLY  119 (672)
T ss_pred             CCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccccccCCchHH
Confidence            478888888643            5678888888888888888888866  68888888888664421 34555778888


Q ss_pred             hhhh--cCchHHHHHHHh-ccCCCCccc-----CCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           66 LACK--NGHVKVMVEMLK-KQHCPMFVT-----NSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        66 ~a~~--~~~~~~~~~l~~-~~~~~~~~~-----~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .++.  .++.+++++|+. .+++++...     ..|-+|++++...+..+++++|+++
T Consensus       120 ~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~  177 (672)
T PHA02730        120 SYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKS  177 (672)
T ss_pred             HHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHc
Confidence            8777  788888888886 556664432     2678888888888888888888888

>PHA02917 ankyrin-like protein; Provisional

Probab=99.81  E-value=4.5e-19  Score=123.97  Aligned_cols=105  Identities=13%  Similarity=0.096  Sum_probs=88.6

Q ss_pred             hhhcCCCCccccCCchhHHHH--HhcCCHHHHHHHHHhcCCCccccc---c-----------cCCChhhhhhh-------
Q 044402           13 INRVTKWKTKDWNENIPLYFA--TSNTYIRGVCFLLELNGHSAIEHN---I-----------KTLYPIHLACK-------   69 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a--~~~~~~~~~~~ll~~~~~~~~~~~---~-----------~~~t~l~~a~~-------   69 (127)
                      +..|++++.+|..|+||||++  +..++.+++++|+++|+++. .++   .           .+.||||+|+.       
T Consensus       123 l~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn-~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~  201 (661)
T PHA02917        123 VEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVL-YEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSES  201 (661)
T ss_pred             HHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccHHHHHHhhcccccc
Confidence            557889999999999999954  45789999999999999885 222   2           23699999986       


Q ss_pred             ----cCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcH--HHHHHHHHhccc
Q 044402           70 ----NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHV--NMVKAIIKISET  118 (127)
Q Consensus        70 ----~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~--~~~~~Ll~~~~~  118 (127)
                          .++.+++++|++.|++++.+|.+|.||||+|+..|+.  +++++|++.++.
T Consensus       202 ~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~  256 (661)
T PHA02917        202 DTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDN  256 (661)
T ss_pred             cccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCcc
Confidence                4689999999999999999999999999999999984  799999864433

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.80  E-value=1e-18  Score=93.92  Aligned_cols=80  Identities=18%  Similarity=0.203  Sum_probs=68.1

Q ss_pred             HHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHH
Q 044402            6 FHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVM   76 (127)
Q Consensus         6 lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~   76 (127)
                      ||.|++.         +..+.+++.    |.||||+|+..++.+++++|++.|.++. .++..|+||||+|+..++.+++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~   75 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL----GNTALHYAAENGNLEIVKLLLENGADIN-SQDKNGNTALHYAAENGNLEIV   75 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT--BSTTSSBHHHHHHHTTHHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhccccc-ccCCCCCCHHHHHHHcCCHHHH
Confidence            6778777         344555555    8899999999999999999999999986 7889999999999999999999


Q ss_pred             HHHHhccCCCCccc
Q 044402           77 VEMLKKQHCPMFVT   90 (127)
Q Consensus        77 ~~l~~~~~~~~~~~   90 (127)
                      ++|++.|++++.+|
T Consensus        76 ~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   76 KLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHTTT-TTSS-
T ss_pred             HHHHHcCCCCCCcC
Confidence            99999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.79  E-value=7.6e-19  Score=104.48  Aligned_cols=98  Identities=8%  Similarity=-0.019  Sum_probs=85.3

Q ss_pred             cCCCCccccCCchhHHHHHhcCCH----HHHHHHHHhcCCCcccccccCCChhhhhhhcCchHH---HHHHHhccCCCCc
Q 044402           16 VTKWKTKDWNENIPLYFATSNTYI----RGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKV---MVEMLKKQHCPMF   88 (127)
Q Consensus        16 ~~~~~~~d~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~l~~~~~~~~~   88 (127)
                      +++++..+..+.+++|+|+..++.    +++++|.+.+.... ..+..|+||||+|+..|+.+.   +++|++.|++++.
T Consensus        10 ~~~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         10 NLGAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             chHHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            456666788888999999999998    56667778887764 678899999999999988654   7999999999999


Q ss_pred             cc-CCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           89 VT-NSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        89 ~~-~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      ++ ..|.||||+|+..++.+++++|++
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~  115 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCR  115 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHh
Confidence            98 589999999999999999999995

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.79  E-value=2.3e-18  Score=110.11  Aligned_cols=99  Identities=13%  Similarity=0.098  Sum_probs=86.3

Q ss_pred             ccccCCchh-HHHHHhcCCHHHHHHHHHhcCCCcccc----cccCCChhhhhhhcCchHHHHHHHhccCCCCcc-cCCCC
Q 044402           21 TKDWNENIP-LYFATSNTYIRGVCFLLELNGHSAIEH----NIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV-TNSGY   94 (127)
Q Consensus        21 ~~d~~g~t~-l~~a~~~~~~~~~~~ll~~~~~~~~~~----~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~   94 (127)
                      .+|..|+++ |+.|+.+++.+++++|++.|+++. ..    +..|.||||+|+..++.+++++|++.|++++.+ +..|.
T Consensus        27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN-~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~  105 (300)
T PHA02884         27 KKNKICIANILYSSIKFHYTDIIDAILKLGADPE-APFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKI  105 (300)
T ss_pred             ccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCcc-ccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCC
Confidence            577777765 666777789999999999999986 44    458999999999999999999999999999986 46899


Q ss_pred             cHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           95 NILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        95 t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      ||||+|+..++.+++++|++. .+++.
T Consensus       106 TpLh~Aa~~~~~eivklLL~~GAdin~  132 (300)
T PHA02884        106 TPLYISVLHGCLKCLEILLSYGADINI  132 (300)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            999999999999999999998 55544

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.78  E-value=9e-19  Score=109.43  Aligned_cols=100  Identities=17%  Similarity=0.181  Sum_probs=94.7

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |++|||+||..         +.+|+.+|..+...-||||.|+.+||.++++.|++..++++ ..+..|.||||+||.-|.
T Consensus        34 gfsplhwaakegh~aivemll~rgarvn~tnmgddtplhlaaahghrdivqkll~~kadvn-avnehgntplhyacfwgy  112 (448)
T KOG0195|consen   34 GFSPLHWAAKEGHVAIVEMLLSRGARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVN-AVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             CcchhhhhhhcccHHHHHHHHhcccccccccCCCCcchhhhhhcccHHHHHHHHHHhcccc-hhhccCCCchhhhhhhcH
Confidence            78999999988         78899999999989999999999999999999999999996 788999999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVK  102 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~  102 (127)
                      ..+++-|+..|+.+++.++.|.||+..|.-
T Consensus       113 dqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen  113 DQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             HHHHHHHHhccceeeecccCCCCchhhhch
Confidence            999999999999999999999999998764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.78  E-value=2.1e-18  Score=123.65  Aligned_cols=103  Identities=14%  Similarity=0.104  Sum_probs=87.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCC-------------------------------HH
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTY-------------------------------IR   40 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~-------------------------------~~   40 (127)
                      .|+||||.|+..         +..|++++.+|..|.||||+|+..++                               .+
T Consensus       557 ~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~~~~~~~~~L~~Aa~~g~~~  636 (823)
T PLN03192        557 KGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDLT  636 (823)
T ss_pred             CCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCcccCcccCchHHHHHHHhCCHH
Confidence            489999999988         55689999999999999886655554                               55


Q ss_pred             HHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCC-CcHHHHHHhcC
Q 044402           41 GVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSG-YNILHFVVKNG  104 (127)
Q Consensus        41 ~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~  104 (127)
                      ++++|+++|++++ .++..|+||||+|+..|+.+++++|++.|++++..+..| .||+.++....
T Consensus       637 ~v~~Ll~~Gadin-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~~l~~~~~  700 (823)
T PLN03192        637 AMKELLKQGLNVD-SEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPTELRELLQ  700 (823)
T ss_pred             HHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHHH
Confidence            5666777888885 788999999999999999999999999999999999888 89988775443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.76  E-value=2.5e-18  Score=114.00  Aligned_cols=119  Identities=18%  Similarity=0.253  Sum_probs=105.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCC--------------------
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH--------------------   51 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~--------------------   51 (127)
                      +|.|+||.++..         +..+++++..|..|+||+|.|+.-+|..++++|++.|++                    
T Consensus        72 DglTalhq~~id~~~e~v~~l~e~ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~  151 (527)
T KOG0505|consen   72 DGLTALHQACIDDNLEMVKFLVENGANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEAT  151 (527)
T ss_pred             ccchhHHHHHhcccHHHHHHHHHhcCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCccccccCcch
Confidence            588999998877         667899999999999999999999999999999998853                    


Q ss_pred             --------------------------------------CcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCC
Q 044402           52 --------------------------------------SAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSG   93 (127)
Q Consensus        52 --------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (127)
                                                            ........|.|.||.|+..|..+++++|+..|.+++.+|.+|
T Consensus       152 ~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dg  231 (527)
T KOG0505|consen  152 LDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDG  231 (527)
T ss_pred             hHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccC
Confidence                                                  111333448999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           94 YNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      |||||.|+.=|..++++.|+++ ++.+
T Consensus       232 WtPlHAAA~Wg~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  232 WTPLHAAAHWGQEDACELLVEHGADMD  258 (527)
T ss_pred             CCcccHHHHhhhHhHHHHHHHhhcccc
Confidence            9999999999999999999998 5544

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=1.2e-18  Score=119.51  Aligned_cols=114  Identities=25%  Similarity=0.349  Sum_probs=105.6

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|+|+||.|+.+         +...+.+++.|..|.+|||+|+..|+.++++.++.++..++ .....+.||||.|+.+|
T Consensus        48 ~gfTalhha~Lng~~~is~llle~ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~n-a~~~e~~tplhlaaqhg  126 (854)
T KOG0507|consen   48 SGFTLLHHAVLNGQNQISKLLLDYEALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILN-AVNIENETPLHLAAQHG  126 (854)
T ss_pred             cchhHHHHHHhcCchHHHHHHhcchhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCC-cccccCcCccchhhhhc
Confidence            589999999998         33456788999999999999999999999999999997665 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |.+++.+|+.+|+++-..++.+.|++..|++.|..+++..|++.
T Consensus       127 h~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~  170 (854)
T KOG0507|consen  127 HLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQK  170 (854)
T ss_pred             chHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhh
Confidence            99999999999999999999999999999999999999999976

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.75  E-value=3.7e-18  Score=121.40  Aligned_cols=114  Identities=17%  Similarity=0.151  Sum_probs=95.7

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccc--------------cCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKD--------------WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN   57 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d--------------~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   57 (127)
                      .|.||||.|+..         +.+|++++.++              ..|.+|||.|+..++.+++++|++.|+++. .++
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gadin-~~d  205 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPADIL-TAD  205 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcchh-hHh
Confidence            388999999998         66788888643              368999999999999999999999999886 789


Q ss_pred             ccCCChhhhhhhcC---------chHHHHHHHhccCCC-------CcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           58 IKTLYPIHLACKNG---------HVKVMVEMLKKQHCP-------MFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        58 ~~~~t~l~~a~~~~---------~~~~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ..|+||||+|+..+         ...+.+++++.+...       +..|.+|.|||++|+..|+.+++++|++.
T Consensus       206 ~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~  279 (743)
T TIGR00870       206 SLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAI  279 (743)
T ss_pred             hhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHH
Confidence            99999999999986         233556666554443       56789999999999999999999999984

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.75  E-value=2.6e-17  Score=101.55  Aligned_cols=114  Identities=23%  Similarity=0.281  Sum_probs=104.2

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCC-----HHHHHHHHHhcC--CCcccccccCCChhh
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTY-----IRGVCFLLELNG--HSAIEHNIKTLYPIH   65 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~-----~~~~~~ll~~~~--~~~~~~~~~~~t~l~   65 (127)
                      +.+++|.++..         +..+.+++.+|..|.||+|+|+..++     .+++++|++.++  .....++..|+||||
T Consensus        73 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~  152 (235)
T COG0666          73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLH  152 (235)
T ss_pred             ccCHHHHHHHcCcHHHHHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhH
Confidence            46788888655         56778899999999999999999999     999999999999  454467999999999


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +|+..|+.+++++++..|++++..+..|.|++++|+..+..++++.+++.
T Consensus       153 ~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         153 WAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             HHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999975

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.74  E-value=5.9e-18  Score=99.59  Aligned_cols=86  Identities=17%  Similarity=0.081  Sum_probs=76.4

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccc-cCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKD-WNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHL   66 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~   66 (127)
                      +|.||||+|+..            +..|++++.+| ..|.||||+|+..++.+++++|+.. ++++. .++..|.||||+
T Consensus        54 ~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n-~~~~~g~tpL~~  132 (154)
T PHA02736         54 HGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNME-ILNYAFKTPYYV  132 (154)
T ss_pred             CCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCc-cccCCCCCHHHH
Confidence            488999999854            45688999998 4899999999999999999999984 78775 788999999999


Q ss_pred             hhhcCchHHHHHHHhccCCCC
Q 044402           67 ACKNGHVKVMVEMLKKQHCPM   87 (127)
Q Consensus        67 a~~~~~~~~~~~l~~~~~~~~   87 (127)
                      |+..++.+++++|+..|++.+
T Consensus       133 A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736        133 ACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             HHHcCCHHHHHHHHHcCCCCC
Confidence            999999999999999988764

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.74  E-value=1.4e-16  Score=89.98  Aligned_cols=95  Identities=29%  Similarity=0.426  Sum_probs=88.1

Q ss_pred             ccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHH
Q 044402           21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFV  100 (127)
Q Consensus        21 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  100 (127)
                      .+|..|.|||++|+..++.+++++|++.+.... ..+..|.+|++.|+..+..+++++|+..+.+++..+..+.||+|+|
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~-~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a   80 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVN-AKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLA   80 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHH
Confidence            456789999999999999999999999998864 6788899999999999999999999999988888889999999999


Q ss_pred             HhcCcHHHHHHHHHhc
Q 044402          101 VKNGHVNMVKAIIKIS  116 (127)
Q Consensus       101 ~~~~~~~~~~~Ll~~~  116 (127)
                      +..++.+++++|++.+
T Consensus        81 ~~~~~~~~~~~L~~~~   96 (126)
T cd00204          81 ARNGNLDVVKLLLKHG   96 (126)
T ss_pred             HHcCcHHHHHHHHHcC
Confidence            9999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.73  E-value=3.4e-17  Score=113.19  Aligned_cols=114  Identities=17%  Similarity=0.164  Sum_probs=103.9

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCc--------c---------------ccCCchhHHHHHhcCCHHHHHHHHHh
Q 044402            1 MGNTAFHESLFI---------INRVTKWKT--------K---------------DWNENIPLYFATSNTYIRGVCFLLEL   48 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~--------~---------------d~~g~t~l~~a~~~~~~~~~~~ll~~   48 (127)
                      +|+||||+|+.+         +..|+|++.        .               -+.|..||..||=-++++++++|+++
T Consensus       183 ~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~  262 (782)
T KOG3676|consen  183 YGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAH  262 (782)
T ss_pred             cCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhc
Confidence            589999999988         556777766        1               23477899999999999999999999


Q ss_pred             cCCCcccccccCCChhhhhhhcCchHHHHHHHhccCC--CCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           49 NGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHC--PMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        49 ~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ++++. .+|..|+|.||..+.+-..++..++++.|++  ....|..|-|||..|++.|..++.+.+++.
T Consensus       263 gAd~~-aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  263 GADPN-AQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             CCCCC-ccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            99997 8999999999999999999999999999999  799999999999999999999999999987

>PHA02792 ankyrin-like protein; Provisional

Probab=99.72  E-value=4.5e-17  Score=112.03  Aligned_cols=114  Identities=12%  Similarity=0.031  Sum_probs=96.1

Q ss_pred             CcchHHHHHHH----------hhhcCCCCccccCCchhHHHHHh-cCCHHHHHHHHHhcCCCc-----------------
Q 044402            2 GNTAFHESLFI----------INRVTKWKTKDWNENIPLYFATS-NTYIRGVCFLLELNGHSA-----------------   53 (127)
Q Consensus         2 g~~~lh~a~~~----------l~~~~~~~~~d~~g~t~l~~a~~-~~~~~~~~~ll~~~~~~~-----------------   53 (127)
                      |.+|+|.-+..          +.+|++++.++..+.+|+++|+. .++.+++++|++.|++..                 
T Consensus        71 ~~~~~~~~~s~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~  150 (631)
T PHA02792         71 DFDIFEYLCSDNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRA  150 (631)
T ss_pred             CccHHHHHHHhcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccc
Confidence            56777776665          67889999999889999999966 689999999999997521                 


Q ss_pred             ------------------ccccccCCChhhhhhhcC-------chHHHHHHHhccCCCCcccCCCCcHHHHHHhcC--cH
Q 044402           54 ------------------IEHNIKTLYPIHLACKNG-------HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG--HV  106 (127)
Q Consensus        54 ------------------~~~~~~~~t~l~~a~~~~-------~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~--~~  106 (127)
                                        +.++..|.||||+++..+       +.++++.|+++|+++..+|..|.||||+|+...  ..
T Consensus       151 ~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~  230 (631)
T PHA02792        151 EYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKR  230 (631)
T ss_pred             cccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchH
Confidence                              034556899999999988       899999999999999999999999999999998  78


Q ss_pred             HHHHHHHHh
Q 044402          107 NMVKAIIKI  115 (127)
Q Consensus       107 ~~~~~Ll~~  115 (127)
                      |+++.|+..
T Consensus       231 ei~~~L~~~  239 (631)
T PHA02792        231 EIFDALFDS  239 (631)
T ss_pred             HHHHHHHhc
Confidence            999999875

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.71  E-value=4.1e-17  Score=79.74  Aligned_cols=54  Identities=24%  Similarity=0.463  Sum_probs=31.6

Q ss_pred             CCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHH
Q 044402           60 TLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII  113 (127)
Q Consensus        60 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll  113 (127)
                      |.||||+|+..|+.+++++|++.|.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.71  E-value=2e-16  Score=111.20  Aligned_cols=86  Identities=23%  Similarity=0.354  Sum_probs=82.5

Q ss_pred             hHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHH
Q 044402           29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNM  108 (127)
Q Consensus        29 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  108 (127)
                      .|+.|+..|+.+.++.|++.|++++ ..+..|+||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPN-CRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHH
Confidence            5889999999999999999999986 788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 044402          109 VKAIIKI  115 (127)
Q Consensus       109 ~~~Ll~~  115 (127)
                      +++|+++
T Consensus       164 v~~Ll~~  170 (664)
T PTZ00322        164 VQLLSRH  170 (664)
T ss_pred             HHHHHhC
Confidence            9999987

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.70  E-value=1.1e-16  Score=114.01  Aligned_cols=58  Identities=14%  Similarity=0.141  Sum_probs=39.1

Q ss_pred             cCCChhhhhhhcCchHHHHHHHhccCCCCccc--------------CCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           59 KTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT--------------NSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        59 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .|.||||+|+..|+.+++++|++.|++++.++              ..|.|||+.|+..|+.+++++|++++
T Consensus       127 ~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g  198 (743)
T TIGR00870       127 PGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP  198 (743)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC
Confidence            46677777777777777777777777665432              24667777777777777777777663

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.70  E-value=1.2e-16  Score=93.18  Aligned_cols=95  Identities=21%  Similarity=0.290  Sum_probs=88.0

Q ss_pred             hHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHH
Q 044402           29 PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNM  108 (127)
Q Consensus        29 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  108 (127)
                      -+.+|+..+....|+.||+..++-.+.++..+.||||-|+..|+.++++.|+..|++++.+...||||||.||+-++.++
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhH
Confidence            47789999999999999998888777899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh-cccccccc
Q 044402          109 VKAIIKI-SETNISMD  123 (127)
Q Consensus       109 ~~~Ll~~-~~~~~~~~  123 (127)
                      +.+|+++ .+++-.++
T Consensus       146 a~~LLqhgaDVnA~t~  161 (228)
T KOG0512|consen  146 AGRLLQHGADVNAQTK  161 (228)
T ss_pred             HHHHHhccCccccccc
Confidence            9999999 77776554

>PHA02792 ankyrin-like protein; Provisional

Probab=99.70  E-value=2.1e-16  Score=108.82  Aligned_cols=115  Identities=9%  Similarity=0.005  Sum_probs=94.7

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCC--chhHHHHHhcCCH---HHHHHHHHhcCCCcccccccCCChhhhhhh
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNE--NIPLYFATSNTYI---RGVCFLLELNGHSAIEHNIKTLYPIHLACK   69 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g--~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~   69 (127)
                      .+++.|+..         +..|++++.+|..|  .||||+|+.....   +++++++++|+++. .++..|+||||+|+.
T Consensus       341 n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GADIN-~kD~~G~TPLh~Aa~  419 (631)
T PHA02792        341 NKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDDIN-KIDKHGRSILYYCIE  419 (631)
T ss_pred             hHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCccc-cccccCcchHHHHHH
Confidence            346667655         66899999998775  6999998776654   35788999999986 789999999999999


Q ss_pred             cCchHHHHHHHhccCCCCcccCCCCcHHHHHHh--c--------CcHHHHHHHHHh-cccc
Q 044402           70 NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVK--N--------GHVNMVKAIIKI-SETN  119 (127)
Q Consensus        70 ~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~--~--------~~~~~~~~Ll~~-~~~~  119 (127)
                      .++.+++++|++.|++++.++..|.|||++|..  .        ...++++.|+++ +...
T Consensus       420 ~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        420 SHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             cCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999999999999999999975  2        235668888877 5443

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.69  E-value=2.9e-16  Score=82.52  Aligned_cols=84  Identities=17%  Similarity=0.126  Sum_probs=49.9

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMV  109 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  109 (127)
                      +.++..+|..+-|+.....|-+.+  ....|.+|||+|+-+|..++++||+..|++++.+|..|-|||..|++.|+.+|+
T Consensus         6 ~~W~vkNG~~DeVk~~v~~g~nVn--~~~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cV   83 (117)
T KOG4214|consen    6 VAWNVKNGEIDEVKQSVNEGLNVN--EIYGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCV   83 (117)
T ss_pred             HhhhhccCcHHHHHHHHHccccHH--HHhCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHH
Confidence            455556666665555555554442  223556666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHh
Q 044402          110 KAIIKI  115 (127)
Q Consensus       110 ~~Ll~~  115 (127)
                      ++|++.
T Consensus        84 klLL~~   89 (117)
T KOG4214|consen   84 KLLLQN   89 (117)
T ss_pred             HHHHHc
Confidence            666655

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.68  E-value=1.7e-16  Score=83.39  Aligned_cols=87  Identities=14%  Similarity=0.209  Sum_probs=75.0

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCC
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS   92 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   92 (127)
                      ..++-++|.. ..|++|||||+-+|+.++++||+..|+++. .++..|.|||-.|++-||.+++++|++.|++-..+..+
T Consensus        22 v~~g~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~-~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~Pd   99 (117)
T KOG4214|consen   22 VNEGLNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQ-DKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPD   99 (117)
T ss_pred             HHccccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccC-CccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCC
Confidence            3444444432 479999999999999999999999999997 79999999999999999999999999999999998888


Q ss_pred             CCcHHHHHH
Q 044402           93 GYNILHFVV  101 (127)
Q Consensus        93 ~~t~l~~a~  101 (127)
                      |.+.+..+-
T Consensus       100 G~~~~eate  108 (117)
T KOG4214|consen  100 GTALIEATE  108 (117)
T ss_pred             chhHHhhcc
Confidence            887765443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.67  E-value=2.6e-16  Score=76.87  Aligned_cols=54  Identities=26%  Similarity=0.389  Sum_probs=45.6

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHH
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML   80 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~   80 (127)
                      |+||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+++++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din-~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADIN-AQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            7899999999999999999999999986 67999999999999999999999985

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.67  E-value=7.1e-16  Score=96.34  Aligned_cols=103  Identities=18%  Similarity=0.139  Sum_probs=96.2

Q ss_pred             hhhcC-CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccC
Q 044402           13 INRVT-KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN   91 (127)
Q Consensus        13 l~~~~-~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   91 (127)
                      ++++. .+|..|..|.++|..|+..|+.+.++.|++.|++++..+...+.|||++|+..|+.++.++|++.|+.....+.
T Consensus        31 LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~~~vNs  110 (396)
T KOG1710|consen   31 LLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARMYLVNS  110 (396)
T ss_pred             HHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhccCccccccc
Confidence            55554 48999999999999999999999999999999999888889999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           92 SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      -|+|+-..|+.-|+.+|+..+-.+
T Consensus       111 vgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  111 VGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             hhhhHHHHHHHhcchHHHHHHhcc
Confidence            999999999999999999887654

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.66  E-value=1.4e-16  Score=78.32  Aligned_cols=54  Identities=24%  Similarity=0.335  Sum_probs=23.4

Q ss_pred             HHhc-CCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHH
Q 044402           46 LELN-GHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFV  100 (127)
Q Consensus        46 l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  100 (127)
                      ++.+ .++ +..+..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         2 L~~~~~~~-n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    2 LEHGPADV-NAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             ----T--T-T---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CccCcCCC-cCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            4445 333 35666677777777777777777777766777777777777777665

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.63  E-value=7.1e-16  Score=106.29  Aligned_cols=122  Identities=20%  Similarity=0.278  Sum_probs=100.1

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.+|||+|+-.         ++.+..+|.....|.||||.++.++|.+.+.+|+.+++++. ..+..+.|++-.|+++|
T Consensus        81 kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~-i~nns~~t~ldlA~qfg  159 (854)
T KOG0507|consen   81 KGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPF-IRNNSKETVLDLASRFG  159 (854)
T ss_pred             cCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCcc-ccCcccccHHHHHHHhh
Confidence            367889988877         55667788888999999999999999999999999999985 68888899999999999


Q ss_pred             chHHHHHHHhccCCC--------CcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccccc
Q 044402           72 HVKVMVEMLKKQHCP--------MFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISMD  123 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~--------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~~  123 (127)
                      ..++++.|++...+.        ..++..+.+|||.|+++|+.++++.|++. -+++..+.
T Consensus       160 r~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~ag~din~~t~  220 (854)
T KOG0507|consen  160 RAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLEAGFDINYTTE  220 (854)
T ss_pred             hhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHhcCCCcccccc
Confidence            999999888863222        34566778899999999999999999888 66665553

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.62  E-value=3.5e-15  Score=104.99  Aligned_cols=96  Identities=17%  Similarity=0.118  Sum_probs=84.4

Q ss_pred             hHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHH
Q 044402            5 AFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKV   75 (127)
Q Consensus         5 ~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~   75 (127)
                      .|+.|+..         +..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++.++
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn-~~d~~G~TpLh~A~~~g~~~i  163 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT-LLDKDGKTPLELAEENGFREV  163 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCCcHHH
Confidence            36666665         55789999999999999999999999999999999999986 789999999999999999999


Q ss_pred             HHHHHhc-------cCCCCcccCCCCcHHHHHH
Q 044402           76 MVEMLKK-------QHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        76 ~~~l~~~-------~~~~~~~~~~~~t~l~~a~  101 (127)
                      +++|+..       |++.+..+..|.+|+..+.
T Consensus       164 v~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        164 VQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            9999998       8888888887877766544

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=8.9e-16  Score=75.40  Aligned_cols=52  Identities=21%  Similarity=0.220  Sum_probs=32.8

Q ss_pred             hc-CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402           15 RV-TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus        15 ~~-~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      .+ .+++.+|..|.||||+|+.+|+.+++++|++.++++. .++..|+||+++|
T Consensus         4 ~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~-~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    4 HGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPN-AKDKDGQTPLHYA   56 (56)
T ss_dssp             --T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             cCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCC-CCcCCCCCHHHhC
Confidence            45 6789999999999999999999999999999999996 8999999999986

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.59  E-value=6.3e-15  Score=98.53  Aligned_cols=85  Identities=16%  Similarity=0.151  Sum_probs=76.6

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMV  109 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~  109 (127)
                      |.-|+..|-+++|+..+..-.++. ..+..|.|+||.|+-.||+++|+||++.|++++..|.+||||||+|+.-++.-++
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpS-qpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~c  632 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPS-QPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMC  632 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCC-CCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHH
Confidence            444788899999999888878876 7888899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHh
Q 044402          110 KAIIKI  115 (127)
Q Consensus       110 ~~Ll~~  115 (127)
                      +.|++.
T Consensus       633 kqLVe~  638 (752)
T KOG0515|consen  633 KQLVES  638 (752)
T ss_pred             HHHHhc
Confidence            999988

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.58  E-value=1.1e-14  Score=101.00  Aligned_cols=115  Identities=17%  Similarity=0.213  Sum_probs=97.1

Q ss_pred             CcchHHHHHHH-----------hhhcCCCCc------cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcc----------
Q 044402            2 GNTAFHESLFI-----------INRVTKWKT------KDWNENIPLYFATSNTYIRGVCFLLELNGHSAI----------   54 (127)
Q Consensus         2 g~~~lh~a~~~-----------l~~~~~~~~------~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~----------   54 (127)
                      |.|.||.|.-.           +++-++--+      ..+.|.||||.|..+.+.++|++|++.|+++.-          
T Consensus       143 GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~  222 (782)
T KOG3676|consen  143 GETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPD  222 (782)
T ss_pred             hhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcc
Confidence            78899998875           444443111      346799999999999999999999999987432          


Q ss_pred             ---cc---------cccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           55 ---EH---------NIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        55 ---~~---------~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                         ..         ...|..||.+|+-.++.+++++|++.|+|++.+|..|+|.||..+.+-..+|...+++.+
T Consensus       223 dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g  296 (782)
T KOG3676|consen  223 DQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG  296 (782)
T ss_pred             cccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC
Confidence               11         345788999999999999999999999999999999999999999998899999999983

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.52  E-value=2.7e-13  Score=83.55  Aligned_cols=100  Identities=23%  Similarity=0.338  Sum_probs=90.3

Q ss_pred             CccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc-----hHHHHHHHhccC---CCCcccC
Q 044402           20 KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH-----VKVMVEMLKKQH---CPMFVTN   91 (127)
Q Consensus        20 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~---~~~~~~~   91 (127)
                      ...+..+.++++.++..+..+.+.+++..+.++ ..++..|.||+|+|+..++     .+++++|++.|+   ....++.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~  145 (235)
T COG0666          67 AARDLDGRLPLHSAASKGDDKIVKLLLASGADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE  145 (235)
T ss_pred             ccCCccccCHHHHHHHcCcHHHHHHHHHcCCCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence            345666899999999999999999999999999 4899999999999999999     999999999999   5577799


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           92 SGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      .|.||||+|+..|+.++++.|++. +++..
T Consensus       146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~  175 (235)
T COG0666         146 DGNTPLHWAALNGDADIVELLLEAGADPNS  175 (235)
T ss_pred             CCCchhHHHHHcCchHHHHHHHhcCCCCcc
Confidence            999999999999999999999988 44443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.48  E-value=4.1e-13  Score=89.70  Aligned_cols=106  Identities=17%  Similarity=0.208  Sum_probs=92.5

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCC-----
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPM-----   87 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-----   87 (127)
                      +..++.++..+.+|.|++|-+|.-.+.+||++|+++|++++ ..+..+|||+|.|+.-|+..++++|++.|++..     
T Consensus        60 l~~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn-~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsd  138 (527)
T KOG0505|consen   60 LNRGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANVN-AQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSD  138 (527)
T ss_pred             hccCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCcc-ccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCC
Confidence            55678889999999999999999999999999999999996 899999999999999999999999999776441     


Q ss_pred             ------------------------------------------------------cccCCCCcHHHHHHhcCcHHHHHHHH
Q 044402           88 ------------------------------------------------------FVTNSGYNILHFVVKNGHVNMVKAII  113 (127)
Q Consensus        88 ------------------------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~Ll  113 (127)
                                                                            ..+..|.|.+|+|+-.|+.++.++|+
T Consensus       139 g~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl  218 (527)
T KOG0505|consen  139 GNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLL  218 (527)
T ss_pred             CCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHH
Confidence                                                                  23455889999999999999999999


Q ss_pred             Hh-cccc
Q 044402          114 KI-SETN  119 (127)
Q Consensus       114 ~~-~~~~  119 (127)
                      +. ..+.
T Consensus       219 ~ag~~~~  225 (527)
T KOG0505|consen  219 QAGYSVN  225 (527)
T ss_pred             HhccCcc
Confidence            88 4433

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.46  E-value=4.6e-13  Score=89.81  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCccc-C
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT-N   91 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~   91 (127)
                      +.+-.|+..-++.|.|+||-|.-.||.++|+||++.|++++ ..|..||||||.|+.-+++.+++.|++.|+.+-... .
T Consensus       570 i~ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVN-a~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlS  648 (752)
T KOG0515|consen  570 IYEVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVN-AADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLS  648 (752)
T ss_pred             HHhhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCccc-CccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecc
Confidence            44556777788999999999999999999999999999996 899999999999999999999999999999884333 4


Q ss_pred             CCCcHHHHH--HhcCcHHHHHHHHH
Q 044402           92 SGYNILHFV--VKNGHVNMVKAIIK  114 (127)
Q Consensus        92 ~~~t~l~~a--~~~~~~~~~~~Ll~  114 (127)
                      ++.|+..-.  .+.|+..|.+||..
T Consensus       649 DmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  649 DMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             cccchhhhcchhhhhHHHHHHHHHH
Confidence            556766542  36678889999863

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.39  E-value=4.7e-12  Score=84.43  Aligned_cols=96  Identities=19%  Similarity=0.237  Sum_probs=86.7

Q ss_pred             CccccCCchh------HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCC
Q 044402           20 KTKDWNENIP------LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSG   93 (127)
Q Consensus        20 ~~~d~~g~t~------l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (127)
                      -.+|.+|.+.      ||.+++-++.++.-.|+..|++.+...-..|.||||.|++.|+..-+++|+-+|+++...|.+|
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~G  200 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSG  200 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCC
Confidence            3467776664      9999999999999999999999976666779999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHh
Q 044402           94 YNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +||+.+|-..|+.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999999888764

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.37  E-value=5.4e-13  Score=96.14  Aligned_cols=119  Identities=20%  Similarity=0.227  Sum_probs=107.9

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      |+|-.||..         +.+|+++.-+|+.|.+||..|+..||..+|+.|+...+++...+++.+.|+|.+||..|.++
T Consensus       759 t~LT~acaggh~e~vellv~rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~  838 (2131)
T KOG4369|consen  759 TNLTSACAGGHREEVELLVVRGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTR  838 (2131)
T ss_pred             ccccccccCccHHHHHHHHHhcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcch
Confidence            566666665         66789999999999999999999999999999999999887678899999999999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           75 VMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      ++++|+..|++..-++...-|||.+|...|+.++++.|+.+ .+++.++
T Consensus       839 vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrt  887 (2131)
T KOG4369|consen  839 VVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRT  887 (2131)
T ss_pred             HHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhccccccccc
Confidence            99999999999999999999999999999999999999998 5666655

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.31  E-value=1.2e-12  Score=91.83  Aligned_cols=84  Identities=18%  Similarity=0.169  Sum_probs=78.0

Q ss_pred             CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHH
Q 044402           19 WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILH   98 (127)
Q Consensus        19 ~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~   98 (127)
                      .+++|..|+++||.++.-+.-++++||+++|.++.......|+||||-|...|+++++-.|+.+|.+..++|.+|..||.
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            56799999999999999999999999999999997444467999999999999999999999999999999999999999


Q ss_pred             HHHh
Q 044402           99 FVVK  102 (127)
Q Consensus        99 ~a~~  102 (127)
                      ..++
T Consensus       125 ~~~r  128 (1267)
T KOG0783|consen  125 FLSR  128 (1267)
T ss_pred             HHhh
Confidence            8776

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.29  E-value=9.1e-12  Score=82.70  Aligned_cols=93  Identities=17%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhc-cCCCCcccCCCCcHHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK-QHCPMFVTNSGYNILHFV  100 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a  100 (127)
                      ++..+..++++|+..|.+..++.+.-.|.+.. .++....|+||.|+.-|+++++++|++. +.+++.+|+.|+|||.-|
T Consensus       502 ~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~-~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA  580 (622)
T KOG0506|consen  502 RENDTVINVMYAAKNGDLSALRRFALQGMDLE-TKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDA  580 (622)
T ss_pred             ccccchhhhhhhhhcCCHHHHHHHHHhccccc-ccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHh
Confidence            34556678999999999999999888888885 8999999999999999999999999986 678899999999999999


Q ss_pred             HhcCcHHHHHHHHHh
Q 044402          101 VKNGHVNMVKAIIKI  115 (127)
Q Consensus       101 ~~~~~~~~~~~Ll~~  115 (127)
                      ...++.+++++|.+.
T Consensus       581 ~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  581 KHFKHKEVVKLLEEA  595 (622)
T ss_pred             HhcCcHHHHHHHHHH
Confidence            999999999999876

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.15  E-value=4.5e-10  Score=70.85  Aligned_cols=95  Identities=13%  Similarity=0.114  Sum_probs=81.8

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCc-ccCCCCcHHHHHHhcC
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF-VTNSGYNILHFVVKNG  104 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~-~~~~~~t~l~~a~~~~  104 (127)
                      -..||.-+.-.+..+-...||+.-...+ ..|..|.++|.-|+..|+.+.++.+++.|+|++. ++..+-|||++|+..|
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~vn-~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSG   90 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQVN-QRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSG   90 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhhhh-ccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcC
Confidence            3468889999999888888888755554 7899999999999999999999999999999965 4588999999999999


Q ss_pred             cHHHHHHHHHhcccccc
Q 044402          105 HVNMVKAIIKISETNIS  121 (127)
Q Consensus       105 ~~~~~~~Ll~~~~~~~~  121 (127)
                      ..++++.|++.|.....
T Consensus        91 n~dvcrllldaGa~~~~  107 (396)
T KOG1710|consen   91 NQDVCRLLLDAGARMYL  107 (396)
T ss_pred             CchHHHHHHhccCcccc
Confidence            99999999988544433

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.14  E-value=5.5e-11  Score=79.12  Aligned_cols=81  Identities=17%  Similarity=0.067  Sum_probs=71.1

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      .++++|+..         .+.+.++..+|++.+|.||.|+..|++++++||++........++++|+|||--|..++|.+
T Consensus       508 i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~  587 (622)
T KOG0506|consen  508 INVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKE  587 (622)
T ss_pred             hhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHH
Confidence            456677666         77889999999999999999999999999999999765544589999999999999999999


Q ss_pred             HHHHHHhccC
Q 044402           75 VMVEMLKKQH   84 (127)
Q Consensus        75 ~~~~l~~~~~   84 (127)
                      ++++|.+...
T Consensus       588 v~k~L~~~~~  597 (622)
T KOG0506|consen  588 VVKLLEEAQY  597 (622)
T ss_pred             HHHHHHHHhc
Confidence            9999988643

>PF13606 Ank_3: Ankyrin repeat

Probab=99.12  E-value=1e-10  Score=49.81  Aligned_cols=26  Identities=42%  Similarity=0.474  Sum_probs=12.3

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCC
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGH   51 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~   51 (127)
                      |+||||+||..|+.+++++|+++|++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gad   27 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGAD   27 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            44444444444444444444444443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.12  E-value=2.8e-10  Score=77.61  Aligned_cols=103  Identities=9%  Similarity=-0.055  Sum_probs=93.7

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCc-ccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccC
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSA-IEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN   91 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   91 (127)
                      .+.|.++..++.+-++.||||+.-|+-++|+|++++++... ...+..|.|+||.|+-.++..++++|++.|++....|.
T Consensus       886 h~~gg~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~  965 (1004)
T KOG0782|consen  886 HLNGGSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDS  965 (1004)
T ss_pred             HhcCCceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheeccc
Confidence            45678888899999999999999999999999999987532 24567899999999999999999999999999999999


Q ss_pred             CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           92 SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        92 ~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .|.||-.-|-+.|..++..||-++
T Consensus       966 kg~tp~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  966 KGKTPQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             CCCChHHHHHhcCCchHHHHHhhh
Confidence            999999999999999999999866

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=1.7e-10  Score=49.11  Aligned_cols=29  Identities=24%  Similarity=0.392  Sum_probs=27.2

Q ss_pred             cCCChhhhhhhcCchHHHHHHHhccCCCC
Q 044402           59 KTLYPIHLACKNGHVKVMVEMLKKQHCPM   87 (127)
Q Consensus        59 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~   87 (127)
                      .|+||||+|+..|+++++++|++.|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            48999999999999999999999999876

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.09  E-value=6.7e-10  Score=74.75  Aligned_cols=88  Identities=23%  Similarity=0.277  Sum_probs=70.0

Q ss_pred             hhHHHHHhcCCHHHHHH-HHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcH
Q 044402           28 IPLYFATSNTYIRGVCF-LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHV  106 (127)
Q Consensus        28 t~l~~a~~~~~~~~~~~-ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  106 (127)
                      .|+|++......+-... +....+......+..|.||||+|+..|+.+.++.|+..|+++..+|+.|++|||-|+..|+.
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCH
Confidence            35888888887665444 32222222236788889999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHh
Q 044402          107 NMVKAIIKI  115 (127)
Q Consensus       107 ~~~~~Ll~~  115 (127)
                      +++..++++
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            887777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.07  E-value=2.7e-10  Score=49.70  Aligned_cols=27  Identities=26%  Similarity=0.237  Sum_probs=12.1

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCC
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHS   52 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~   52 (127)
                      |.||||+|+..++.+++++|++.|+++
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~   28 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADI   28 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCT
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCC
Confidence            344444444444444444444444443

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.07  E-value=7.8e-10  Score=75.27  Aligned_cols=89  Identities=15%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCc---ccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSA---IEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHV  106 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  106 (127)
                      |.-|....++..+-.||.+|...-   ...+..|.|+||+||+.|++.+.++|+=+|+++...|.+|+|+|.||-..|..
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            556677777888888998886532   13456689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccc
Q 044402          107 NMVKAIIKISET  118 (127)
Q Consensus       107 ~~~~~Ll~~~~~  118 (127)
                      +|+..|+++|..
T Consensus       708 ec~d~llq~gcp  719 (749)
T KOG0705|consen  708 ECIDVLLQYGCP  719 (749)
T ss_pred             HHHHHHHHcCCC
Confidence            999999998544

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.03  E-value=2.1e-10  Score=83.32  Aligned_cols=113  Identities=17%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             cchHHHHHHH---------hhhcCCCCccc--cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            3 NTAFHESLFI---------INRVTKWKTKD--WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         3 ~~~lh~a~~~---------l~~~~~~~~~d--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|||-+|...         +..|+.+|.+.  +-|..||+.|..+||.+....|++.|++++.....+.+|+|-+|+..|
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            4666666554         45566777755  457788888888888888888888888876444556778888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ..+++.+|+.+.+++..+-..|-|||.-++..|+.++-.+|+..
T Consensus       938 r~evv~lLLa~~anvehRaktgltplme~AsgGyvdvg~~li~~  981 (2131)
T KOG4369|consen  938 RPEVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDVGNLLIAA  981 (2131)
T ss_pred             cchHHHHHHHHhhhhhhhcccCCcccchhhcCCccccchhhhhc
Confidence            88888888888888877778888888888888888888888766

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.98  E-value=1.4e-09  Score=47.35  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=30.4

Q ss_pred             cCCChhhhhhhcCchHHHHHHHhccCCCCcccC
Q 044402           59 KTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN   91 (127)
Q Consensus        59 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   91 (127)
                      .|.||||+|+..|+.+++++|++.|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            478999999999999999999999999988763

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.85  E-value=9.4e-09  Score=69.41  Aligned_cols=77  Identities=18%  Similarity=0.246  Sum_probs=65.2

Q ss_pred             hHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCch
Q 044402            5 AFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV   73 (127)
Q Consensus         5 ~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   73 (127)
                      |+|.++..           ......++.+|..|.||||.|+.-|+...++.|+..+++.. .++..||+|||.|+..|+.
T Consensus        23 ~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~-~kN~~gWs~L~EAv~~g~~  101 (560)
T KOG0522|consen   23 PLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVS-IKNNEGWSPLHEAVSTGNE  101 (560)
T ss_pred             ccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCcc-ccccccccHHHHHHHcCCH
Confidence            47777666           11224678899999999999999999999999999999886 8999999999999999999


Q ss_pred             HHHHHHHhc
Q 044402           74 KVMVEMLKK   82 (127)
Q Consensus        74 ~~~~~l~~~   82 (127)
                      .++..++.+
T Consensus       102 q~i~~vlr~  110 (560)
T KOG0522|consen  102 QIITEVLRH  110 (560)
T ss_pred             HHHHHHHHH
Confidence            887776663

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.84  E-value=2.8e-09  Score=75.55  Aligned_cols=75  Identities=15%  Similarity=0.180  Sum_probs=65.6

Q ss_pred             HHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCccc-CCCCcHHHHHHhcCcHHHHHHHHHhccc
Q 044402           44 FLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT-NSGYNILHFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        44 ~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      |+-..+.+..+.+|..|.++||+++.-+..++++||+++|+++..+| ..|+||||-|+..|+.+|+-.|++++.-
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S  111 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS  111 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCc
Confidence            44445555556789999999999999999999999999999999998 7799999999999999999999988543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.78  E-value=2.9e-08  Score=59.17  Aligned_cols=70  Identities=16%  Similarity=0.097  Sum_probs=63.3

Q ss_pred             cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhc-CCCcccccccCCChhhhhhhcCchHHHHHHHhccCCC
Q 044402           16 VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELN-GHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP   86 (127)
Q Consensus        16 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~   86 (127)
                      +.++|++|..|+|++++|+..|.-+.+.||+.+| +.+ ...+..+.+.+-+|.+.|+.+++..|.+...+-
T Consensus         2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~v-gv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFV-GVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccc-cccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            4689999999999999999999999999999999 555 478899999999999999999999999975554

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.71  E-value=7.4e-08  Score=64.97  Aligned_cols=68  Identities=15%  Similarity=0.177  Sum_probs=61.1

Q ss_pred             hhhcCCCCccc-cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHh
Q 044402           13 INRVTKWKTKD-WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK   81 (127)
Q Consensus        13 l~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~   81 (127)
                      |.-|+++|..+ +.|.||||.|+..|+..-++.|+-+|+++. ..+..|.||+.+|-..||-++.+-|++
T Consensus       153 l~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~-a~d~~GmtP~~~AR~~gH~~laeRl~e  221 (669)
T KOG0818|consen  153 LSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPG-AQDSSGMTPVDYARQGGHHELAERLVE  221 (669)
T ss_pred             HHcccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCC-CCCCCCCcHHHHHHhcCchHHHHHHHH
Confidence            67789999977 559999999999999999999999999997 899999999999999999887666655

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.68  E-value=3.7e-08  Score=70.72  Aligned_cols=85  Identities=20%  Similarity=0.200  Sum_probs=78.0

Q ss_pred             cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhc
Q 044402           24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKN  103 (127)
Q Consensus        24 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  103 (127)
                      ..|+++||.|+..+....+++|+++|++++ ..+..|.+|+|.+...|+...+..++.+|+++...+.+|.+|+.+|...
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn-~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~  732 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVN-ALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEA  732 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcch-hhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhh
Confidence            557999999999999999999999999985 8999999999999999999999999999999999999999999999877


Q ss_pred             CcHHHH
Q 044402          104 GHVNMV  109 (127)
Q Consensus       104 ~~~~~~  109 (127)
                      .+.+.+
T Consensus       733 ~~~d~~  738 (785)
T KOG0521|consen  733 ANADIV  738 (785)
T ss_pred             ccccHH
Confidence            554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=5.4e-07  Score=59.21  Aligned_cols=73  Identities=19%  Similarity=0.044  Sum_probs=63.3

Q ss_pred             hhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           28 IPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        28 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      .-|-+||+.|..+.+++|++.|.+++ ..+....+||.+|+.-||.+++++|+++|+--..-..+|.-++.-|.
T Consensus        38 ~elceacR~GD~d~v~~LVetgvnVN-~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~YgaL  110 (516)
T KOG0511|consen   38 GELCEACRAGDVDRVRYLVETGVNVN-AVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCHYGAL  110 (516)
T ss_pred             HHHHHHhhcccHHHHHHHHHhCCCcc-hhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhhhhhh
Confidence            35889999999999999999999996 88999999999999999999999999999877666667766654443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.58  E-value=1.5e-07  Score=64.50  Aligned_cols=66  Identities=9%  Similarity=0.010  Sum_probs=60.9

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCc
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF   88 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~   88 (127)
                      -+.+|+|+||.||+.|++.+.++|+=+|.+.. ..+..|.|+|.+|-..|..+++..|+.+|+..+.
T Consensus       657 ~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~-~rda~g~t~l~yar~a~sqec~d~llq~gcp~e~  722 (749)
T KOG0705|consen  657 GEGDGRTALHLAARKGNVVLAQLLIWYGVDVM-ARDAHGRTALFYARQAGSQECIDVLLQYGCPDEC  722 (749)
T ss_pred             cCCCCcchhhhhhhhcchhHHHHHHHhCccce-ecccCCchhhhhHhhcccHHHHHHHHHcCCCccc
Confidence            55778999999999999999999999999996 8999999999999999999999999999987743

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.48  E-value=3.8e-07  Score=62.84  Aligned_cols=93  Identities=12%  Similarity=0.083  Sum_probs=74.5

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCC--CcccCCCCcHHHHHHhcCcHH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP--MFVTNSGYNILHFVVKNGHVN  107 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~~~~~t~l~~a~~~~~~~  107 (127)
                      +.-|+..+.+-.++....+|.... .++..-.+.||+|+.-|+-++++|+++.|..-  +..+..|.|+||-|+..++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            455666666555555666666664 68888889999999999999999999987654  778899999999999999999


Q ss_pred             HHHHHHHhcccccccc
Q 044402          108 MVKAIIKISETNISMD  123 (127)
Q Consensus       108 ~~~~Ll~~~~~~~~~~  123 (127)
                      ++.+|++.+..-..+|
T Consensus       949 vc~~lvdagasl~ktd  964 (1004)
T KOG0782|consen  949 VCQLLVDAGASLRKTD  964 (1004)
T ss_pred             HHHHHHhcchhheecc
Confidence            9999998855444443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.48  E-value=4.2e-07  Score=59.69  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=54.1

Q ss_pred             CChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhccc
Q 044402           61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        61 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      +.-|..||+.|+.+.+++|++.|.+++..|....+||.+|+..|+..++++|+++|.+
T Consensus        37 f~elceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi   94 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI   94 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc
Confidence            4568899999999999999999999999999999999999999999999999999543

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.47  E-value=2.3e-07  Score=67.14  Aligned_cols=112  Identities=13%  Similarity=0.050  Sum_probs=69.4

Q ss_pred             CcchHHHHHHH--------hhh--cCCCCccccCCchhHHHHHhcCCHHHHHHHH-HhcCCCcccccccCCChhhhhhhc
Q 044402            2 GNTAFHESLFI--------INR--VTKWKTKDWNENIPLYFATSNTYIRGVCFLL-ELNGHSAIEHNIKTLYPIHLACKN   70 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~--~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll-~~~~~~~~~~~~~~~t~l~~a~~~   70 (127)
                      |.+.+|.++..        +.+  +......|..|...+|. |..++.++.-+++ -.+..+. +++..||||||+|+.+
T Consensus       574 ~~lllhL~a~~lyawLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~-i~D~~G~tpL~wAa~~  651 (975)
T KOG0520|consen  574 DMLLLHLLAELLYAWLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWAFLPISADGVAID-IRDRNGWTPLHWAAFR  651 (975)
T ss_pred             chHHHHHHHHHhHHHHHHHHhcccccCchhhcccCCChhhH-hhhcCCceeEEEEeecccccc-cccCCCCcccchHhhc
Confidence            56667777666        222  23344455555556666 4444444433332 3444443 6778888888888888


Q ss_pred             CchHHHHHHHhccCCC------CcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           71 GHVKVMVEMLKKQHCP------MFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |+..++..|.+.|+..      ......|.|+-.+|...|+..+.-+|-+.
T Consensus       652 G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  652 GREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             CHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            8888888887766655      22345577777777777777777666543

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.43  E-value=1.1e-06  Score=52.57  Aligned_cols=66  Identities=14%  Similarity=0.143  Sum_probs=60.7

Q ss_pred             cccccCCChhhhhhhcCchHHHHHHHhcc-CCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           55 EHNIKTLYPIHLACKNGHVKVMVEMLKKQ-HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        55 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      ..|..|||+++.|+.-|.-+.+.||+.+| +.+...|..+.+...+|-+.|..+.++.|.+. ++...
T Consensus         7 ~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~   74 (223)
T KOG2384|consen    7 ARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSH   74 (223)
T ss_pred             chhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhccCCC
Confidence            68889999999999999999999999999 88899999999999999999999999999987 44433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.29  E-value=3.5e-06  Score=60.23  Aligned_cols=91  Identities=13%  Similarity=0.080  Sum_probs=76.0

Q ss_pred             CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCC----------
Q 044402           17 TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP----------   86 (127)
Q Consensus        17 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~----------   86 (127)
                      .++|..|.-|+++|+.|..+.+.++.++|++++...        ..+|-.|+..|.++.+++++..-...          
T Consensus        53 lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   53 LNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             cchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence            457779999999999999999999999999986543        35899999999999999998863333          


Q ss_pred             CcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           87 MFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        87 ~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ...-..+-||+.+|+..++.|+++.|+.+
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            12234467999999999999999999988

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.26  E-value=7.5e-07  Score=64.22  Aligned_cols=78  Identities=15%  Similarity=0.264  Sum_probs=68.8

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.|+||.|+..         +..++++|.+|..|++|+|.+...|+......++++++++. ..+..+.+++.+|....
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~-a~~~~~~~~l~~a~~~~  733 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPN-AFDPDGKLPLDIAMEAA  733 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccccccc-ccCccCcchhhHHhhhc
Confidence            368999999888         67889999999999999999999999999999999999996 88999999999997776


Q ss_pred             chHHHHHH
Q 044402           72 HVKVMVEM   79 (127)
Q Consensus        72 ~~~~~~~l   79 (127)
                      +.+.+-++
T Consensus       734 ~~d~~~l~  741 (785)
T KOG0521|consen  734 NADIVLLL  741 (785)
T ss_pred             cccHHHHH
Confidence            66665444

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.25  E-value=8.6e-07  Score=64.34  Aligned_cols=93  Identities=14%  Similarity=0.184  Sum_probs=75.7

Q ss_pred             ccccCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhhhhhcCchHHHHHHHh-ccCCCCcccCCCCcHHH
Q 044402           21 TKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK-KQHCPMFVTNSGYNILH   98 (127)
Q Consensus        21 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~   98 (127)
                      .....|.+.+|.++..++.-.++.+++- +.... ..+..+...+|+ |..++++.+.+++. .|..++++|..|+||||
T Consensus       569 ~~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~-eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~  646 (975)
T KOG0520|consen  569 SVNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDL-ELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLH  646 (975)
T ss_pred             cCCCcchHHHHHHHHHhHHHHHHHHhcccccCch-hhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccc
Confidence            3456688999999999999999998885 55543 567778888888 56667776665544 47788999999999999


Q ss_pred             HHHhcCcHHHHHHHHHh
Q 044402           99 FVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~  115 (127)
                      ||+..|+..++..|++.
T Consensus       647 wAa~~G~e~l~a~l~~l  663 (975)
T KOG0520|consen  647 WAAFRGREKLVASLIEL  663 (975)
T ss_pred             hHhhcCHHHHHHHHHHh
Confidence            99999999999999965

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.84  E-value=5.2e-05  Score=51.70  Aligned_cols=63  Identities=16%  Similarity=0.069  Sum_probs=47.1

Q ss_pred             HHHHHHHHHhcCCCcc-----cccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           39 IRGVCFLLELNGHSAI-----EHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        39 ~~~~~~ll~~~~~~~~-----~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      ...+++|.+++...+.     ..+..-.|+||+|+..|..+++.+|++.|+|+..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            4466777776655421     23344678888888888888888888888888888888888888776

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.71  E-value=7.2e-05  Score=53.83  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             CcchHHHHHHH-------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCC---------cccccccCCChhh
Q 044402            2 GNTAFHESLFI-------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHS---------AIEHNIKTLYPIH   65 (127)
Q Consensus         2 g~~~lh~a~~~-------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~---------~~~~~~~~~t~l~   65 (127)
                      |+++|+.|..+       ++-..+...     ..+|.+|...+..+.++.++.....-         .......+.||+.
T Consensus        62 Gr~al~iai~nenle~~eLLl~~~~~~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPli  136 (822)
T KOG3609|consen   62 GRLALHIAIDNENLELQELLLDTSSEE-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLM  136 (822)
T ss_pred             hhhceecccccccHHHHHHHhcCcccc-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHH
Confidence            67788888777       222222222     35899999999999999999865432         1134456889999


Q ss_pred             hhhhcCchHHHHHHHhccCCCC
Q 044402           66 LACKNGHVKVMVEMLKKQHCPM   87 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~   87 (127)
                      +||..+++|++++|+.+|+++.
T Consensus       137 LAAh~NnyEil~~Ll~kg~~i~  158 (822)
T KOG3609|consen  137 LAAHLNNFEILQCLLTRGHCIP  158 (822)
T ss_pred             HHHHhcchHHHHHHHHcCCCCC
Confidence            9999999999999999998883

>smart00248 ANK ankyrin repeats

Probab=97.64  E-value=0.00015  Score=29.24  Aligned_cols=25  Identities=28%  Similarity=0.359  Sum_probs=14.7

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcC
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNG   50 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~   50 (127)
                      |.+|+|+++..++.+++++|++.+.
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            4556666666666666666665544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>smart00248 ANK ankyrin repeats

Probab=97.62  E-value=0.00014  Score=29.36  Aligned_cols=24  Identities=38%  Similarity=0.614  Sum_probs=12.2

Q ss_pred             CChhhhhhhcCchHHHHHHHhccC
Q 044402           61 LYPIHLACKNGHVKVMVEMLKKQH   84 (127)
Q Consensus        61 ~t~l~~a~~~~~~~~~~~l~~~~~   84 (127)
                      .+|+++++..++.+++++|++.+.
T Consensus         3 ~~~l~~~~~~~~~~~~~~ll~~~~   26 (30)
T smart00248        3 RTPLHLAAENGNLEVVKLLLDKGA   26 (30)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCC
Confidence            445555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.50  E-value=0.00025  Score=48.55  Aligned_cols=46  Identities=17%  Similarity=0.200  Sum_probs=42.0

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      .+....|+||||+..|.-+++.+||+.++++. .++..|.||..++.
T Consensus       426 ~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~-~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  426 NDYLTSTFLHYAAAQGARKCVKYFLEEGCDPS-TKDGAGRTPYSLSA  471 (591)
T ss_pred             cccccchHHHHHHhcchHHHHHHHHHhcCCch-hcccCCCCcccccc
Confidence            55567799999999999999999999999996 89999999999987

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=94.91  E-value=0.33  Score=30.70  Aligned_cols=93  Identities=18%  Similarity=0.249  Sum_probs=63.1

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCCc--ccccccCCChhhhhhh--cCchHHHHHHHhccCC-CC--c-ccCCCCcHH
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHSA--IEHNIKTLYPIHLACK--NGHVKVMVEMLKKQHC-PM--F-VTNSGYNIL   97 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~l~~a~~--~~~~~~~~~l~~~~~~-~~--~-~~~~~~t~l   97 (127)
                      -.+++-++...+..+++-+|+++-.--.  -.....+.--+.++..  .-+..++++++++|.- ++  . +-+.|+|-|
T Consensus       179 A~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  179 AHQAMWLSIGNAKEDVALYLLSKFNFTKQDVASMEKELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhhcceecchhhhcCcchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            3467888888888899999988643210  0111222223333322  3557788999998743 32  2 347899999


Q ss_pred             HHHHhcCcHHHHHHHHHhccc
Q 044402           98 HFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        98 ~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      .-|.+.+..+++.+|+++|.+
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCcc
Confidence            999999999999999998654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=94.46  E-value=0.13  Score=26.50  Aligned_cols=47  Identities=13%  Similarity=0.048  Sum_probs=39.1

Q ss_pred             hhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhc
Q 044402           28 IPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK   82 (127)
Q Consensus        28 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~   82 (127)
                      ..+.+|..+|+.++++..++.+...        ...+..|+...+-++++||++.
T Consensus         8 ~tl~~Ai~GGN~eII~~c~~~~~~~--------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    8 KTLEYAIIGGNFEIINICLKKNKPD--------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHhccH--------HHHHHHHHHHhhHHHHHHHHHh
Confidence            5688999999999999998764221        3579999999999999999986

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=92.18  E-value=0.48  Score=24.39  Aligned_cols=49  Identities=18%  Similarity=0.283  Sum_probs=39.9

Q ss_pred             CChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        61 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      ...+..|...|+.|+++..++.+ .+      ....+..|+..-+-+++++|++.-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~-~~------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKN-KP------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHh-cc------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            35678999999999999998753 11      156799999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=91.99  E-value=0.56  Score=29.76  Aligned_cols=51  Identities=8%  Similarity=-0.030  Sum_probs=40.6

Q ss_pred             cCCHHHHHHHHHhcCCCcc---cccccCCChhhhhhhcCchHHHHHHHhccCCC
Q 044402           36 NTYIRGVCFLLELNGHSAI---EHNIKTLYPIHLACKNGHVKVMVEMLKKQHCP   86 (127)
Q Consensus        36 ~~~~~~~~~ll~~~~~~~~---~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~   86 (127)
                      ..+..++++++++|--..+   .+-..|.|.|--|.+.++.+++.+|+..|+-.
T Consensus       227 ~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  227 SASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            3367788999998843222   34567999999999999999999999999754

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=87.85  E-value=1.6  Score=26.76  Aligned_cols=45  Identities=22%  Similarity=0.270  Sum_probs=26.7

Q ss_pred             hhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           64 IHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        64 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      |..|+..|-...+.-.+.+|.+++.      +.|..|+..++..+..+++.
T Consensus       147 l~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhc
Confidence            3455555555555555555544432      56777777777777666653

These proteins may be involved in promoting survival of infected macrophages [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=86.25  E-value=4.2  Score=25.03  Aligned_cols=47  Identities=15%  Similarity=0.080  Sum_probs=21.9

Q ss_pred             HHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHH
Q 044402           30 LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML   80 (127)
Q Consensus        30 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~   80 (127)
                      +..|+.++-++++++.-+.....    ....++.+-.||+..+.++++|+-
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~   96 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIG   96 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHh
Confidence            44455555555554443332211    123344555555555555555553

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	127
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-08
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		2e-07
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		4e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		4e-07
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		5e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2xee_A	157	Structural Determinants For Improved Thermal Stabil		3e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-06
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		2e-05
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-05
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-04
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		1e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		2e-04
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-04
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-04

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 51/97 (52%), Gaps = 3/97 (3%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEM 79
            KD N   PL+ A  N ++  V  LLE     +A + N +T  P+HLA +NGH++V+  +
Sbjct: 30  AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLL 87
Query: 80  LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS 116
           L+          +G   LH   +NGH+ +VK +++  
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 124

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 24  WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
           WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L KQ
Sbjct: 210 WNGYTPLHIAAKQNQVEVARSLLQYGG-SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268
Query: 84  HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                   SG   LH V + GHV +   +IK
Sbjct: 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
           PL+ A SN ++  V  LL+ NG      ++  + P+HLA   GH++++  +LK       
Sbjct: 50  PLHLAASNGHLEIVEVLLK-NGADVNASDLTGITPLHLAAATGHLEIVEVLLKHGADVNA 108
Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
             N G+  LH   K GH+ +V+ ++K
Sbjct: 109 YDNDGHTPLHLAAKYGHLEIVEVLLK 134

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 23  DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
           D +   PL++A  N +   V  LL   G      +     P+H A +NGH +++  +L K
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLS-KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 83  QHCPMFVTNSGYNILHFVVKNGHVNMVKAII-KISETNIS 121
              P    + G   LH+  +NGH  +VK ++ K ++ N S
Sbjct: 93  GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTS 132

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 49.7 bits (117), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 25  NENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ 83
           N   PL+ A  N ++  V  LLE     +A + N +T  P+HLA +NGH++V+  +L+  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRT--PLHLAARNGHLEVVKLLLEAG 58
Query: 84  HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS 116
                   +G   LH   +NGH+ +VK +++  
Sbjct: 59  ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG 91

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 11  FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH-SAIEHNIKTLYPIHLACK 69
            ++++      KD +   PL+ A  N +   V  LL      +A + + KT  P+HLA +
Sbjct: 55  LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKT--PLHLAAE 112
Query: 70  NGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           NGH +V+  +L +   P    + G   L    ++G+  +VK + K
Sbjct: 113 NGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
            KD +   PL+ A    ++  V  LL+    + +    K  Y P+HLA + GH++++  +
Sbjct: 30  AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 80  LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
           LK           GY  LH   + GH+ +V+ ++K      + DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
            KD +   PL+ A    ++  V  LL+    + +    K  Y P+HLA + GH++++  +
Sbjct: 30  AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 80  LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
           LK           GY  LH   + GH+ +V+ ++K      + DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEM 79
            KD +   PL+ A    ++  V  LL+    + +    K  Y P+HLA + GH++++  +
Sbjct: 42  AKDKDGYTPLHLAAREGHLEIVEVLLKAG--ADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 80  LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
           LK           GY  LH   + GH+ +V+ ++K      + DK
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
            +D+    PL+ A    ++  V  LL+ NG      +   + P+HLA + GH+++ VE+L
Sbjct: 42  ARDFTGWTPLHLAAHFGHLEIVEVLLK-NGADVNAKDSLGVTPLHLAARRGHLEI-VEVL 99
Query: 81  KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
            K    +  ++S G+  LH   K GH+ +V+ ++K
Sbjct: 100 LKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 29/103 (28%), Positives = 49/103 (47%), Gaps = 3/103 (2%)
Query: 23  DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
           DW  + PL+ A    ++  V  LL+         N     P+HLA  NGH+++ VE+L K
Sbjct: 44  DWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGAT-PLHLAADNGHLEI-VEVLLK 101
Query: 83  QHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
               +   +  G+  LH    +GH+ +V+ ++K      + DK
Sbjct: 102 HGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 3/92 (3%)
Query: 19  WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
           W +KD   N PL+ A  N +   V  LL   G      +     P+HLA KNGH +++  
Sbjct: 4   WGSKD--GNTPLHNAAKNGHAEEVKKLLS-KGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVK 110
           +L K       +  G    H   KNGH  +VK
Sbjct: 61  LLAKGADVNARSKDGNTPEHLAKKNGHHEIVK 92

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 30  LYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV 89
           L+ A+    I  V +LL+ NG      +     P+H AC +GH+KV VE+L +      V
Sbjct: 14  LHIASIKGDIPSVEYLLQ-NGSDPNVKDHAGWTPLHEACNHGHLKV-VELLLQHKA--LV 69
Query: 90  TNSGY---NILHFVVKNGHVNMVKAII 113
             +GY   + LH   KNGHV++VK ++
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLL 96

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/103 (25%), Positives = 52/103 (50%), Gaps = 3/103 (2%)
Query: 23  DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEMLK 81
           DW    PL+   +N ++  +  LL+    + +  + K+ + P+HLA   GH++++  +LK
Sbjct: 44  DWFGITPLHLVVNNGHLEIIEVLLKY--AADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Query: 82  KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
                  +   GY  LH   ++GH+ +V+ ++K      + DK
Sbjct: 102 YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 50/105 (47%), Gaps = 3/105 (2%)
Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
            +D   + PL+ A    ++  V  LL+ NG      +     P+HLA K GH+++ VE+L
Sbjct: 42  AEDTYGDTPLHLAARVGHLEIVEVLLK-NGADVNALDFSGSTPLHLAAKRGHLEI-VEVL 99
Query: 81  KKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
            K    +   ++ G   LH     GH+ +V+ ++K      + DK
Sbjct: 100 LKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISM 122
           P+H A + GH+ ++V+++K    P  +   G + +H   + GH ++V  +I   +    M
Sbjct: 79  PLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMM 138
Query: 123 DK 124
           D+
Sbjct: 139 DQ 140

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
Query: 23  DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
           D +   PL+ A  N + + V  LL   G      +     P+H A +NGH +V+  ++ K
Sbjct: 34  DSDGRTPLHHAAENGH-KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 83  QHCPMFVTNSGYNILHFVVKNGHVNMVKAII-KISETNIS 121
                   + G   LH   +NGH  +VK +I K ++ N S
Sbjct: 93  GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS 132

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 4/101 (3%)
Query: 23  DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK 82
           D +   PL++A    + + +  LL   G      +     P+H A K GH K +V++L  
Sbjct: 34  DSDGRTPLHYAAKEGH-KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGH-KEIVKLLIS 91
Query: 83  QHCPMFVTNS-GYNILHFVVKNGHVNMVKAII-KISETNIS 121
           +   +   +S G   LH+  K GH  +VK +I K ++ N S
Sbjct: 92  KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTS 132

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	127
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-06
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-04
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-04
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3v30_A	172	DNA-binding protein rfxank; structural genomics co	7e-05
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-05
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-04
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	4e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	7e-06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-05
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-04
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	9e-06
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-05
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-04
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-05
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-04
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-05
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	6e-04
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-04
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-05
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	5e-05
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-04
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	2e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-05
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	5e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-05
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-05
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-04
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-04
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	7e-05
2rfa_A	232	Transient receptor potential cation channel subfa	1e-04
2rfa_A	232	Transient receptor potential cation channel subfa	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-04
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	7e-04
2etb_A	256	Transient receptor potential cation channel subfam	1e-04
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-04
2pnn_A	273	Transient receptor potential cation channel subfa	3e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	5e-04
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	3e-04
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	4e-04
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-04
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-04
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	7e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	8e-04
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	8e-04

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 46.3 bits (111), Expect = 4e-07
 Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
                + PL+ A    ++  V  LLE     A      T     P+H+A K G V+V  E
Sbjct: 109 ATTAGHTPLHIAAREGHVETVLALLE---KEA-SQACMTKKGFTPLHVAAKYGKVRV-AE 163

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L ++   P     +G   LH  V + ++++VK ++ 
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
             WN   PL+ A     +     LL+   +     N +++    P+HLA + GH ++ V 
Sbjct: 208 PAWNGYTPLHIAAKQNQVEVARSLLQ---YGG-SANAESVQGVTPLHLAAQEGHAEM-VA 262

Query: 79  MLKKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L  +         SG   LH V + GHV +   +IK
Sbjct: 263 LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 299

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 43.3 bits (103), Expect = 5e-06
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +      PL+ A    +   V  LL      A   N+       P+HL  + GHV V  +
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLS---KQA-NGNLGNKSGLTPLHLVAQEGHVPV-AD 295

Query: 79  MLKKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L K    +   T  GY  LH     G++ +VK +++
Sbjct: 296 VLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 42.5 bits (101), Expect = 1e-05
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 9/93 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
                  PL+ A+    I+ V FLL+   H A + N KT     P+H A + GH  + V 
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQ---HQA-DVNAKTKLGYSPLHQAAQQGHTDI-VT 361

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVK 110
           +L K    P  V++ G   L    + G++++  
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTD 394

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 21/96 (21%), Positives = 43/96 (44%), Gaps = 7/96 (7%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            + +   PL+      ++     L++   H     +  T     P+H+A   G++K++  
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIK---HGV-MVDATTRMGYTPLHVASHYGNIKLVKF 329

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L+ Q      T  GY+ LH   + GH ++V  ++K
Sbjct: 330 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.9 bits (97), Expect = 3e-05
 Identities = 25/97 (25%), Positives = 45/97 (46%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            +     PL+ A    +     +LL+   + A + N K      P+H A + GH  + V+
Sbjct: 43  SNVKVETPLHMAARAGHTEVAKYLLQ---NKA-KVNAKAKDDQTPLHCAARIGHTNM-VK 97

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L + +  P   T +G+  LH   + GHV  V A+++
Sbjct: 98  LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 3/94 (3%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
               +   PL+ A+   ++  V  LL+  G S    N+K   P+H+A + GH +V  + L
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEV-AKYL 66

Query: 81  KKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAII 113
            +    +          LH   + GH NMVK ++
Sbjct: 67  LQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLL 100

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 2/53 (3%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           P+H+A   GH+ + V+ L ++   P          LH   + GH  + K +++
Sbjct: 17  PLHVASFMGHLPI-VKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQ 68

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 44.8 bits (107), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY----PIHLACKNGHVKVMV 77
            D   N  LY+A  +  ++ V   ++    +                + A     V + V
Sbjct: 91  FDDKGNTALYYAVDSGNMQTVKLFVK---KNW-RLMFYGKTGWKTSFYHAVMLNDVSI-V 145

Query: 78  EMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
                +    F      + +H  +KNGHV+M+  ++
Sbjct: 146 SYFLSEIPSTFDLAILLSCIHITIKNGHVDMMILLL 181

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 23/95 (24%), Positives = 42/95 (44%), Gaps = 7/95 (7%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT-LYPIHLACKNGHVKVMVEML 80
            D + +   Y+A ++  +R VC LL      A   N+    +P+H A      K+ V++L
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN---AGA-LKNLLENEFPLHQAATLEDTKI-VKIL 81

Query: 81  KKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
                      + G   L++ V +G++  VK  +K
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVK 116

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 7/89 (7%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKNGHVKVMVEMLKKQHC-P 86
             Y A     +  V + L          ++  L   IH+  KNGHV + + +L       
Sbjct: 132 SFYHAVMLNDVSIVSYFLS---EIPSTFDLAILLSCIHITIKNGHVDM-MILLLDYMTST 187

Query: 87  MFVTNSGY-NILHFVVKNGHVNMVKAIIK 114
               +  +   +   + N  + M++A+ K
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFK 216

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 44.3 bits (106), Expect = 1e-06
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +D     PL+ A S         L+    + A + + +      P+ LA +    + M+E
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAV-EGMLE 109

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            L   H     V + G + LH+     +V+    ++K
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 146

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 43.2 bits (103), Expect = 2e-06
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
                   L  A++  Y   V  LLE       + NI       P+  A +  HVK  VE
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLE---RDV-DINIYDWNGGTPLLYAVRGNHVKC-VE 119

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            L  +        +SGY  +   V  G+  + + I  
Sbjct: 120 ALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIEN 156

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 39.3 bits (93), Expect = 7e-05
 Identities = 11/92 (11%), Positives = 30/92 (32%), Gaps = 8/92 (8%)

Query: 27  NIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQ 83
           ++ ++   +   +  +   L          N        P+  A   G ++  V  L + 
Sbjct: 3   SLSIHQLAAQGELDQLKEHLR---KGDNLVNKPDERGFTPLIWASAFGEIET-VRFLLEW 58

Query: 84  HC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
              P  +     + L      G+ ++V  +++
Sbjct: 59  GADPHILAKERESALSLASTGGYTDIVGLLLE 90

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 43.2 bits (103), Expect = 3e-06
 Identities = 18/93 (19%), Positives = 37/93 (39%), Gaps = 14/93 (15%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQ-- 83
            ++          V   L+   ++  + N    +   P+H AC+ G   V VEML  +  
Sbjct: 8   DIFTQCREGNAVAVRLWLD---NTENDLNQGDDHGFSPLHWACREGRSAV-VEMLIMRGA 63

Query: 84  --HCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
             +    +       LH    +GH ++V+ +++
Sbjct: 64  RINV---MNRGDDTPLHLAASHGHRDIVQKLLQ 93

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 14/106 (13%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLE------------LNGHSAIEHNIKTLYPIHLACK 69
           +D    +PLY +     +     LL+             NG + +   +  L  +  A  
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 70  NGHVKVMVEMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
               +V +++L+++    +   N+G        K     + +  + 
Sbjct: 300 PSKQEV-LQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLA 344

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 12/95 (12%), Positives = 26/95 (27%), Gaps = 9/95 (9%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML 80
            ++      L+ A     +    +L    G      + +   PIHLA       + V  L
Sbjct: 48  IQNRFGCTALHLACKFGCVDTAKYLAS-VGEVHSLWHGQK--PIHLAVMANKTDL-VVAL 103

Query: 81  KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI 115
            +          G      + +     + +    +
Sbjct: 104 VEGA-----KERGQMPESLLNECDEREVNEIGSHV 133

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMV 77
             D      ++ A        V  L+E          I+  +    +HLACK G V    
Sbjct: 15  KSDDENMEKIHVAARKGQTDEVRRLIE---TGV-SPTIQNRFGCTALHLACKFGCVDT-A 69

Query: 78  EMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
           + L      +     G   +H  V     ++V A++
Sbjct: 70  KYLAS-VGEVHSLWHGQKPIHLAVMANKTDLVVALV 104

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 11/103 (10%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 22  KDWNENIPLYFATS--NTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVM 76
           K       L++       Y+  +  L++     A     K      P+  A +  + +  
Sbjct: 134 KHCKGQTALHWCVGLGPEYLEMIKILVQ---LGA-SPTAKDKADETPLMRAMEFRNREA- 188

Query: 77  VEMLKKQHCPM------FVTNSGYNILHFVVKNGHVNMVKAII 113
           ++++             +    G + LH+ +     ++    +
Sbjct: 189 LDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 15/104 (14%), Positives = 36/104 (34%), Gaps = 18/104 (17%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            D +     + A  +     +  LL+      ++   +       +H+A      +  V+
Sbjct: 75  LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQET-VQ 133

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L                   SG + L   V+N  ++MV+ +++
Sbjct: 134 LLLERGADIDAVD------IKSGRSPLIHAVENNSLSMVQLLLQ 171

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 42.4 bits (101), Expect = 7e-06
 Identities = 21/96 (21%), Positives = 36/96 (37%), Gaps = 5/96 (5%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            D + + PL+ A     +  V  L+ L      E +I       P+HLA       V V 
Sbjct: 5   ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSV-VR 63

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAII 113
           +L      PM +   G    H   ++     ++A++
Sbjct: 64  LLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALL 99

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 38.2 bits (90), Expect = 2e-04
 Identities = 17/103 (16%), Positives = 42/103 (40%), Gaps = 20/103 (19%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLEL--NGHSAIEHNIKTLYPIHLACKNGHVKVMVEM 79
           ++++    L+ A +      V  LLE   +  +    + ++  P+  A +N  + + V++
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRS--PLIHAVENNSLSM-VQL 168

Query: 80  L--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           L         +         SG + LH     G + +V+ +++
Sbjct: 169 LLQHGANVNAQ-------MYSGSSALHSASGRGLLPLVRTLVR 204

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSA-IEHNIKTLYPIHLACKNGHVKVMVEML 80
              + + PL+ A  +     V  LL+   H A ++       PIH A + GHV+  V  L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQ---HGASVQPESDLASPIHEAARRGHVEC-VNSL 176

Query: 81  KKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAII 113
                 +    +     L+   +N     VK ++
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLL 210

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 19/95 (20%), Positives = 39/95 (41%), Gaps = 6/95 (6%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSA-IEHNIKTLY-PIHLACKNGHVKVMVEM 79
            + +   P++ A    ++  V  L+    +   I+H I  L  P++LAC+N      V+ 
Sbjct: 153 PESDLASPIHEAARRGHVECVNSLIA---YGGNIDHKISHLGTPLYLACENQQRAC-VKK 208

Query: 80  LKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           L +    +       + LH VV+     +   ++ 
Sbjct: 209 LLESGADVNQGKGQDSPLHAVVRTASEELACLLMD 243

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 12/117 (10%)

Query: 2   GNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL 61
           G   F     + N +        ++  P++ A  + +   +  L+          NI T 
Sbjct: 38  GPRDFPGIRLLSNPL---MGDAVSDWSPMHEAAIHGHQLSLRNLIS---QGW-AVNIITA 90

Query: 62  Y---PIHLACKNGHVKVMVEMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
               P+H AC  GH+   V++L K       VT   +  L     +G  + V  +++
Sbjct: 91  DHVSPLHEACLGGHLSC-VKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQ 146

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 20/97 (20%), Positives = 38/97 (39%), Gaps = 8/97 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +D     PL+ A S         L+    + A + + +      P+ LA +    + M+E
Sbjct: 86  QDNMGRTPLHAAVSADAQGVFQILIR---NRATDLDARMHDGTTPLILAARLAV-EGMLE 141

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            L   H     V + G + LH+     +V+    ++K
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLK 178

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           ++  +  PL+ A           LL        +  ++      P+HLAC+ G +   V 
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLG---AGC-DPELRDFRGNTPLHLACEQGCLAS-VG 95

Query: 79  ML----KKQHCPMFV---TNSGYNILHFVVKNGHVNMVKAIIK 114
           +L       H    +     +G+  LH    +G++ +V+ ++ 
Sbjct: 96  VLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS 138

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 40.6 bits (96), Expect = 3e-05
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 13/101 (12%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH----NIKTLY---PIHLACKNGHVK 74
              + +  L+ A  +        ++              N +      P+HLA      +
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQ----VKGDLAFLNFQNNLQQTPLHLAVITNQPE 59

Query: 75  VMVEMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +  E L    C P      G   LH   + G +  V  + +
Sbjct: 60  I-AEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLE--LNGHSAIEHNIKTLY---PIHLACKNGHVKVM 76
           +D+  N PL+ A     +  V  L +     H               +HLA  +G++ + 
Sbjct: 74  RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI- 132

Query: 77  VEMLKKQHCPMFVTN--SGYNILHFVVKNGHVNMVKAIIK 114
           VE+L      +      +G   LH  V   + ++V  ++K
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLK 172

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLEL--NGHSAIEHNIKTLYPIHLACKNGHVKVMVEM 79
            ++N +  L+ A+ + Y+  V  L+ L  + ++    N +T   +HLA    +  + V +
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRT--ALHLAVDLQNPDL-VSL 169

Query: 80  LKKQH-CPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           L K       VT  GY+            + + + +
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQ 205

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 41.6 bits (99), Expect = 1e-05
 Identities = 19/103 (18%), Positives = 40/103 (38%), Gaps = 22/103 (21%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           KD   +  L+ A    +   V +LL    +  ++ N +      P+  A +  HV + V+
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLS---NGQMDVNCQDDGGWTPMIWATEYKHVDL-VK 128

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
           +L         +        N     LH+   +G V++ + ++
Sbjct: 129 LLLSKGSDINIR-------DNEENICLHWAAFSGCVDIAEILL 164

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 18/104 (17%), Positives = 32/104 (30%), Gaps = 23/104 (22%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +D  ENI L++A  +  +     LL        + +   ++   P+H+A +       V 
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLA---AKC-DLHAVNIHGDSPLHIAARENRYDC-VV 194

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +          K          G   L     N  V     + K
Sbjct: 195 LFLSRDSDVTLK-------NKEGETPLQCASLNSQVWSALQMSK 231

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 21/112 (18%), Positives = 42/112 (37%), Gaps = 23/112 (20%)

Query: 20  KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVM 76
           K +  N+  PL+ A    ++     L++     A   +  +     P+  A +N H++  
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQ---AGA-NIDTCSEDQRTPLMEAAENNHLEA- 59

Query: 77  VEML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI 120
           V+ L         K          G   LH   K GH  +V+ ++   + ++
Sbjct: 60  VKYLIKAGALVDPK-------DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDV 104

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQ-- 83
           PL+ A        V  LL            K      P+H +      ++    L  +  
Sbjct: 5   PLHQACMENEFFKVQELLHSKP---SLLLQKDQDGRIPLHWSVSFQAHEI-TSFLLSKME 60

Query: 84  --HCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
             +   +  +SG+   H     G++ +VK++ 
Sbjct: 61  NVNLDDYPDDSGWTPFHIACSVGNLEVVKSLY 92

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 40.9 bits (97), Expect = 2e-05
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 10/100 (10%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLL----ELNGHSAIEHNIKTLYPIHLACKNGHVKVMV 77
           KD +  IPL+++ S        FLL     +N     + +  T  P H+AC  G+++V V
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWT--PFHIACSVGNLEV-V 88

Query: 78  EMLKKQHCPMFV---TNSGYNILHFVVKNGHVNMVKAIIK 114
           + L  +     +   TN G   LH  V      + + +I+
Sbjct: 89  KSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIE 128

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 10/97 (10%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
                   L+ A    +     FL+E   + A    IK  +   P+H A   G +K+ +E
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIE---NGA-SVRIKDKFNQIPLHRAASVGSLKL-IE 157

Query: 79  MLKKQHCPM--FVTNSGYNILHFVVKNGHVNMVKAII 113
           +L         +    G+  L   +  GH +    ++
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLV 194

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 10/122 (8%)

Query: 2   GNTAFH---------ESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHS 52
           G +  H             ++ +       + N   PL++A S         LLE  G +
Sbjct: 73  GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGAN 131

Query: 53  AIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAI 112
               +      +H A   G++K++  +L  +         G   LH       V   K +
Sbjct: 132 PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

Query: 113 IK 114
           + 
Sbjct: 192 VT 193

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.5 bits (97), Expect = 2e-05
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 4/100 (4%)

Query: 20  KTKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHLACKNGH---VKV 75
           K            A  N ++  +  L EL           +  +   LA +NGH   +  
Sbjct: 122 KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNR 181

Query: 76  MVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI 115
           + E+   +   M    + Y      V  GH N++  ++  
Sbjct: 182 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC 221

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 17/122 (13%), Positives = 41/122 (33%), Gaps = 6/122 (4%)

Query: 7   HESLFIINRVTKWKTKDWNENIPLYFATSNTYIRG---VCFLLELNGHSAIEHNIKTLYP 63
           H +       +    K     +  + A           +C LL  +         +    
Sbjct: 73  HYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLT-SDEIVKVIQAENYQA 131

Query: 64  IHLACKNGHVKVMVEMLKK--QHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNIS 121
             LA +NGH+ V+  + +         +    Y+      +NGH++++  + +++ T  +
Sbjct: 132 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 191

Query: 122 MD 123
             
Sbjct: 192 AM 193

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 40.4 bits (96), Expect = 2e-05
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 23/104 (22%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
                   L  A S  Y   V  LL+       + N        P+  A    HVK  V+
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLD---CGV-DVNEYDWNGGTPLLYAVHGNHVKC-VK 119

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           ML         +       T+SGYN +   V  G+ ++ + I  
Sbjct: 120 MLLESGADPTIE-------TDSGYNSMDLAVALGYRSVQQVIES 156

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 39.3 bits (93), Expect = 5e-05
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 23/105 (21%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMV 77
             D     PL +A ++  I  V FLL+   + A +  +        + LAC  G+  + V
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQ---NGA-DPQLLGKGRESALSLACSKGYTDI-V 85

Query: 78  EML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +ML        +          +G   L + V   HV  VK +++
Sbjct: 86  KMLLDCGVDVNEY-------DWNGGTPLLYAVHGNHVKCVKMLLE 123

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 37.0 bits (87), Expect = 4e-04
 Identities = 7/53 (13%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
            +H     G +   +    +Q   +      G+  L +   +G + +V+ +++
Sbjct: 6   SVHQLAAQGEMLY-LATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ 57

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 8/96 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +D +   P++ A    ++  +  L+E   H A + N+       PIHLA + GH  V V 
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVE---HGA-DVNVPDGTGALPIHLAVQEGHTAV-VS 118

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            L  +         G   L   ++ G  ++V  +  
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.7 bits (94), Expect = 3e-05
 Identities = 30/106 (28%), Positives = 45/106 (42%), Gaps = 23/106 (21%)

Query: 20  KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVM 76
              +      L+ A+    I  V +LL+ NG      N+K      P+H AC +GH+KV 
Sbjct: 4   PFTNHRGETLLHIASIKGDIPSVEYLLQ-NGSDP---NVKDHAGWTPLHEACNHGHLKV- 58

Query: 77  VEML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           VE+L                      + LH   KNGHV++VK ++ 
Sbjct: 59  VELLLQHKALVNTT-------GYQNDSPLHDAAKNGHVDIVKLLLS 97

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 39.3 bits (93), Expect = 5e-05
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 9/97 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           KD     PL+ A ++ +++ V  LL+   H A   N        P+H A KNGHV + V+
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQ---HKA-LVNTTGYQNDSPLHDAAKNGHVDI-VK 93

Query: 79  MLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L         V   G   + +       +++    K
Sbjct: 94  LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 40.3 bits (95), Expect = 4e-05
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +  + + PL+ A     +  +   L+   +     N         ++ AC  GH  + VE
Sbjct: 69  QAESIDNPLHEAAKRGNLSWLRECLD---NRV-GVNGLDKAGSTALYWACHGGHKDI-VE 123

Query: 79  MLKKQH--CPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           ML  Q           G   LH     G+ ++V+ ++ 
Sbjct: 124 MLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLA 161

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 39.9 bits (94), Expect = 5e-05
 Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 8/100 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
                +   +  TS     G   L+  N  +    +I    P+H A K G++   +    
Sbjct: 41  ITDMSDTNWWKGTSK----GRTGLIPSNYVAEQAESIDN--PLHEAAKRGNLSW-LRECL 93

Query: 82  KQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI 120
                   +  +G   L++    GH ++V+ +       +
Sbjct: 94  DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL 133

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 8/97 (8%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            D   +  LY+A    +   V  L        IE N +       +H A   G+  + V+
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLF---TQPNIELNQQNKLGDTALHAAAWKGYADI-VQ 157

Query: 79  MLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
           +L  +     + N                +++K    
Sbjct: 158 LLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQG 194

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 36.8 bits (86), Expect = 7e-04
 Identities = 12/89 (13%), Positives = 23/89 (25%), Gaps = 12/89 (13%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQHC 85
            ++ A      R    L    G         T             G   ++       + 
Sbjct: 15  KVFRALYTFEPRTPDELYIEEGD----IIYITDMSDTNWWKGTSKGRTGLI-----PSNY 65

Query: 86  PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                 S  N LH   K G+++ ++  + 
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLD 94

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.9 bits (94), Expect = 6e-05
 Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 3/112 (2%)

Query: 2   GNTAFHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL 61
              +  E+ +      +          P      N       F    N     E   ++ 
Sbjct: 37  SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHT-NLQIPTEPEPESP 95

Query: 62  YPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
             +H     G   +  E + ++   +        +LH++  N      + +I
Sbjct: 96  IKLHTEAA-GSYAI-TEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLI 145

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 39.9 bits (94), Expect = 7e-05
 Identities = 13/113 (11%), Positives = 33/113 (29%), Gaps = 15/113 (13%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGH--VKVM 76
            + +E   L+ A +N     + ++L        +           + +   N        
Sbjct: 195 YNKSERSALHQAAANRDFGMMVYMLNSTKLKG-DIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 77  VEML---------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI 120
            ++L                     G   LH+  +  ++ +VK ++    +N 
Sbjct: 254 AKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNK 306

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 38.8 bits (91), Expect = 1e-04
 Identities = 16/107 (14%), Positives = 28/107 (26%), Gaps = 23/107 (21%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEH----NIKTLY---PIHLACKNGHVK 74
              +    L++  SN+       L+       I      N        P+ LA      +
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 75  VMVEML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAII 113
           + V  L                   S  + LH    N    M+  ++
Sbjct: 181 L-VAYLMKAGADPTIY-------NKSERSALHQAAANRDFGMMVYML 219

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 22/104 (21%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           + +     L++A   + +  V +L+   G      + +      PI LA + G ++V V 
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVGEKG---SNKDKQDEDGKTPIMLAAQEGRIEV-VM 330

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            L                   + +        N H N+V    +
Sbjct: 331 YLIQQGASVEAV-------DATDHTARQLAQANNHHNIVDIFDR 367

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 38.9 bits (92), Expect = 7e-05
 Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 23/104 (22%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           KD N   PL+ A  N ++  V  LLE     A + N K      P+HLA +NGH++V V+
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLE---AGA-DVNAKDKNGRTPLHLAARNGHLEV-VK 85

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L         K         +G   LH   +NGH+ +VK +++
Sbjct: 86  LLLEAGADVNAK-------DKNGRTPLHLAARNGHLEVVKLLLE 122

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 39.1 bits (92), Expect = 1e-04
 Identities = 11/53 (20%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFV-TNSGYNILHFVVKNGHVNMVKAIIK 114
           P+ LA K   V+ + ++LK + C +      G   LH      ++     +++
Sbjct: 6   PLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLME 58

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 13/95 (13%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEML----- 80
           PL  A     ++ +  LL+  G    E + +       +H+A    +++    +L     
Sbjct: 6   PLLLAAKENDVQALSKLLKFEG---CEVHQRGAMGETALHIAALYDNLEA-AMVLMEAAP 61

Query: 81  -KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                        G   LH  V N +VN+V+A++ 
Sbjct: 62  ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 17/115 (14%), Positives = 33/115 (28%), Gaps = 23/115 (20%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNG--------------HSAIEHN----IKTLY- 62
            D  +  PL+ A S   +     LL  +G                A        +   + 
Sbjct: 120 MDLWQFTPLHEAASKNRVEVCSLLLS-HGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

Query: 63  --PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI 115
              +  A +   +  + + L  +        S    LH  V + H    K + ++
Sbjct: 179 GHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKR-KQVAEL 232

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 20/103 (19%), Positives = 39/103 (37%), Gaps = 18/103 (17%)

Query: 22  KDWNENIPLYFATSNTYIRG--VCFLLELNGHSAIEH----NIKTLY---PIHLACKNGH 72
           +  +    L+ A ++ + +   V  LL       +      N K      P+H+A +  H
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELL-------LRKGANVNEKNKDFMTPLHVAAERAH 259

Query: 73  VKVMVEMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
             V +E+L K       + + G   LH     GH+   + ++ 
Sbjct: 260 NDV-MEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLS 301

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           KD    +PL+ A S  +      LL+   H A   N   L+   P+H A     V+V   
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLK---HGA-CVNAMDLWQFTPLHEAASKNRVEVCSL 142

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L     P  V   G + +           +    K
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK 178

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 16/104 (15%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSA------------------IEHNIKTLYPIHLACKN 70
           PL  A        V +LLE     A                  I  N      + +   +
Sbjct: 139 PLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYD 198

Query: 71  GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           G +++   +           + G   L    K G + + + I++
Sbjct: 199 GLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 38.1 bits (90), Expect = 2e-04
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 23/104 (22%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            DW    PL+ A    +      LL          + +T     P+H+A   GH  + VE
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLR---AGV-SRDARTKVDRTPLHMAASEGHANI-VE 84

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L         K              LH+  ++ H  +V+ +IK
Sbjct: 85  VLLKHGADVNAK-------DMLKMTALHWATEHNHQEVVELLIK 121

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 15/105 (14%), Positives = 29/105 (27%), Gaps = 20/105 (19%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKV--------MV 77
           PL  A     +  V FLL+ N     + + +       +H   +     V        M 
Sbjct: 151 PLSLAACTNQLAIVKFLLQ-NSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMY 209

Query: 78  EML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
             +                    G   L     +G + ++  I++
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ 254

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 36.6 bits (86), Expect = 3e-04
 Identities = 30/97 (30%), Positives = 47/97 (48%), Gaps = 23/97 (23%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEML----- 80
           PL+ A  N ++  V  LLE     A + N K      P+HLA +NGH++V V++L     
Sbjct: 5   PLHLAARNGHLEVVKLLLE---AGA-DVNAKDKNGRTPLHLAARNGHLEV-VKLLLEAGA 59

Query: 81  ---KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
               K         +G   LH   +NGH+ +VK +++
Sbjct: 60  DVNAK-------DKNGRTPLHLAARNGHLEVVKLLLE 89

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
           +  N   P   A     ++ +   L      A + N    Y       A   G VK  ++
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLS---KGA-DVNECDFYGFTAFMEAAVYGKVKA-LK 122

Query: 79  ML-----------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI 120
            L           K +     +   G   L    + GHV ++K ++     ++
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADV 175

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 26/112 (23%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLE----LNGHSAIEHNIKTLY-----PIHLACKNGH 72
            D+        A     ++ + FL +    +N     + + + L       +  A + GH
Sbjct: 101 CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH 160

Query: 73  VKVMVEML---------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI 115
           V+V +++L                   N G N L   + +   + V+AI  +
Sbjct: 161 VEV-LKILLDEMGADVNAC-------DNMGRNALIHALLSSDDSDVEAITHL 204

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 37.4 bits (88), Expect = 3e-04
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEML- 80
            +   +  L  A     +  V  L  +   +  +   +   P+H A     V V VE L 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV-VEYLL 62

Query: 81  -------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
                   K          G   LH     GH  + + ++K
Sbjct: 63  QHGADVHAK-------DKGGLVPLHNACSYGHYEVAELLVK 96

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 6/52 (11%), Positives = 13/52 (25%), Gaps = 1/52 (1%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            +    +    K            +        +L      G  ++V+ II 
Sbjct: 8   SLPPGKRTNLRKT-GSERIAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIY 58

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY----PIHLACKNGHVKVMV 77
            +     P+         R    LL    H A E N         P+H A + G +   +
Sbjct: 41  PNSYGRRPIQVM-MMGSARVAELLLL---HGA-EPNCADPATLTRPVHDAAREGFLDT-L 94

Query: 78  EMLKKQH-CPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            +L +           G   +    + GH ++ + +  
Sbjct: 95  VVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA 132

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 37.4 bits (88), Expect = 4e-04
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY----PIHLACKNGHVKVMV 77
            D N   PL +A   T+      LL       +  N+   Y     +H A   G+  V +
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFN---VSVNLGDKYHKNTALHWAVLAGNTTV-I 193

Query: 78  EMLKKQHCPMFV-TNSGYNILHFVVKNGHVNMVKAIIK 114
            +L +    +      G + L    +  +V M+  + +
Sbjct: 194 SLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQE 231

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 36.7 bits (86), Expect = 4e-04
 Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 11/98 (11%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY----PIHLACKNGHVKVMV 77
            +     P+         +    LL    H A E N         P+H A + G +   +
Sbjct: 41  LNRFGRRPIQVM-MMGSAQVAELLLL---HGA-EPNCADPATLTRPVHDAAREGFLDT-L 94

Query: 78  EMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            +L +           G   +    + GH ++ + +  
Sbjct: 95  VVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 37.1 bits (87), Expect = 6e-04
 Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 26/114 (22%)

Query: 12  IINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLAC 68
           +   VT+      + +  L+ A  + +   + FLL          +++       +HLA 
Sbjct: 1   VFGYVTE------DGDTALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAA 53

Query: 69  KNGHVKVMVEML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
             G     VE L                    G+  LH   +         +++
Sbjct: 54  ILGEAST-VEKLYAAGAGVLVA-------ERGGHTALHLACRVRAHTCACVLLQ 99

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 36.4 bits (85), Expect = 9e-04
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 10/97 (10%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY----PIHLACKNGHVKVMV 77
           ++++ + PL+ A  +     V  L +     A + N         P+HLA +     V +
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRD---AGA-DLNKPEPTCGRTPLHLAVEAQAASV-L 208

Query: 78  EMLKKQHC-PMFVTNSGYNILHFVVKNGHVNMVKAII 113
           E+L K    P      G   L   +   +  + + + 
Sbjct: 209 ELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR 245

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 36.3 bits (85), Expect = 7e-04
 Identities = 11/86 (12%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
                  + +         +     +    +T  P   A +    +  +  L +      
Sbjct: 17  EYLIEWKDGHSPSWVPSSYIAAD--VVSEYET--PWWTAARKADEQA-LSQLLEDRDVDA 71

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
           V  +G   L FV   G    V+ + +
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAE 97

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 36.4 bits (85), Expect = 8e-04
 Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 1/52 (1%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           P   A +    +  +  L +      V  +G   L FV   G    V+ + +
Sbjct: 48  PWWTAARKADEQA-LSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAE 98

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 36.2 bits (85), Expect = 8e-04
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 23/106 (21%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVE 78
            D     PL  A    ++  V  LL+   + A + N   +    P+HLA   GH+++ VE
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLK---NGA-DVNANDMEGHTPLHLAAMFGHLEI-VE 130

Query: 79  ML--------KKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS 116
           +L         +          G       + NG+ ++ + + K++
Sbjct: 131 VLLKNGADVNAQ-------DKFGKTAFDISIDNGNEDLAEILQKLN 169

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	127
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.96
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.96
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.95
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
2etb_A	256	Transient receptor potential cation channel subfam	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.95
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.95
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.95
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.95
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.95
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.95
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.95
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.95
2rfa_A	232	Transient receptor potential cation channel subfa	99.95
2pnn_A	273	Transient receptor potential cation channel subfa	99.95
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.95
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.95
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.94
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.94
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.94
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.94
2etb_A	256	Transient receptor potential cation channel subfam	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.94
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.94
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.94
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.94
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.94
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.94
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.93
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.93
2pnn_A	273	Transient receptor potential cation channel subfa	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.93
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.93
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.93
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.93
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.93
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.93
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.92
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.92
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.92
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.91
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.91
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.91
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.91
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.91
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.9
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.9
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.89
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.89
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.89
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.89
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.88
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.88
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.87
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.82
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.81
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.8
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.8

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=8.3e-33  Score=164.06  Aligned_cols=117  Identities=22%  Similarity=0.237  Sum_probs=107.5

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|+||||+|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|++++ .++..|+||||+|+..|
T Consensus        36 ~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gadvn-~~d~~G~TpLh~A~~~g  114 (169)
T 4gpm_A           36 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENG  114 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCCCC-CCCCCCCCHHHHHHHcC
Confidence            488999999888         66789999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SET  118 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~  118 (127)
                      +.+++++|++.|++++.+|..|+|||++|+..|+.+++++|+++ +++
T Consensus       115 ~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~i  162 (169)
T 4gpm_A          115 HKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWL  162 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc
Confidence            99999999999999999999999999999999999999999988 443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.97  E-value=2e-30  Score=148.71  Aligned_cols=114  Identities=10%  Similarity=0.080  Sum_probs=107.6

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccccc-CCChhhhhhhc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIK-TLYPIHLACKN   70 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~t~l~~a~~~   70 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+. ++.+++++|++.++++. ..+.. |+||||+|+..
T Consensus        11 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           11 SSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-CADPATLTRPVHDAARE   88 (136)
T ss_dssp             CCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSS-CCBTTTTBCHHHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCC-CcCCCCCCCHHHHHHHc
Confidence            478999999988         56788999999999999999999 99999999999999986 67888 99999999999


Q ss_pred             CchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           71 GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      |+.+++++|++.|++++.++..|.||||+|+..++.+++++|++++
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G  134 (136)
T 1d9s_A           89 GFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAAT  134 (136)
T ss_dssp             TCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999874

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=1.7e-29  Score=149.81  Aligned_cols=117  Identities=24%  Similarity=0.273  Sum_probs=109.0

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      ++|+.||+.         +..|++++.+|..|.||||+|+..++.+++++|++.|+++. .++..|+||||+|+..|+.+
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~~g~TpLh~A~~~g~~~   84 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDSDGRTPLHHAAENGHKE   84 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhccCCCCHHHHHHHcCCHH
Confidence            468888887         67789999999999999999999999999999999999996 78999999999999999999


Q ss_pred             HHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           75 VMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ .+++..
T Consensus        85 ~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~  132 (169)
T 4gpm_A           85 VVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTS  132 (169)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccc
Confidence            99999999999999999999999999999999999999998 555543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=1.1e-29  Score=145.72  Aligned_cols=114  Identities=20%  Similarity=0.230  Sum_probs=107.1

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..++
T Consensus        14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVN-AVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred             ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCC
Confidence            56899999998         56788999999999999999999999999999999999986 788899999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+++++|++.|++++.+|..|.|||++|+..|+.+++++|++.|
T Consensus        93 ~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           93 LEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=5.6e-29  Score=140.45  Aligned_cols=115  Identities=27%  Similarity=0.377  Sum_probs=109.0

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+.+++..|..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHHcC
Confidence            589999999988         56788999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +.+++++|++.|++++.++..|.|||++|+..++.+++++|++++
T Consensus        80 ~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999874

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=6.3e-29  Score=146.70  Aligned_cols=118  Identities=19%  Similarity=0.205  Sum_probs=92.6

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..+
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   80 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-LLGKGRESALSLACSKG   80 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcC
Confidence            467888888877         45567777788888888888888888888888888877775 56777888888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ .+++
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  129 (167)
T 3v31_A           81 YTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT  129 (167)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            88888888888888888888888888888888888888888877 4443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1e-28  Score=148.81  Aligned_cols=119  Identities=15%  Similarity=0.164  Sum_probs=105.0

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..+
T Consensus        34 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  112 (192)
T 2rfm_A           34 YNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-TKDFSGKTPLMWSIIFG  112 (192)
T ss_dssp             TCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcC
Confidence            478999999988         55678888999999999999999999999999999998885 67888999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus       113 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  162 (192)
T 2rfm_A          113 YSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISA  162 (192)
T ss_dssp             CHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            99999999999999999999999999999999999999999988 44443

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.96  E-value=9.1e-29  Score=146.65  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=87.7

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+++++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..+
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  113 (172)
T 3v30_A           35 RGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDIN-IYDWNGGTPLLYAVRGN  113 (172)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence            367777777776         45667777777777788888888888888888877777775 56777778888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++.++..|.|||++|+..|+.+++++|+++
T Consensus       114 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  157 (172)
T 3v30_A          114 HVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENH  157 (172)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence            88888888887777777777778888888888888888777776

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.96  E-value=8.4e-29  Score=156.35  Aligned_cols=120  Identities=19%  Similarity=0.305  Sum_probs=106.2

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|+||||+|+..         +..+++++.++..|.||+++|+..++.+++++|++.|+++. ..+..|+||||+|+..|
T Consensus        85 ~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n-~~d~~g~TpL~~A~~~g  163 (269)
T 4b93_B           85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN-KKDLSGNTPLIYACSGG  163 (269)
T ss_dssp             TSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHCC
Confidence            478899998887         55678888888888899999999999999999999888886 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++ .+++..
T Consensus       164 ~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~  214 (269)
T 4b93_B          164 HHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVL  214 (269)
T ss_dssp             CGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             CHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            99999999999999999999999999999999999999999998 555543

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.5e-28  Score=143.33  Aligned_cols=111  Identities=19%  Similarity=0.258  Sum_probs=68.3

Q ss_pred             cchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCch
Q 044402            3 NTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV   73 (127)
Q Consensus         3 ~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   73 (127)
                      .+|||.|+..         +..+.+++ .|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..++.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~   80 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTCCCHHHHHHHHTCH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcChH
Confidence            4566666665         33444443 35566666666666666666666666666554 4555566666666666666


Q ss_pred             HHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           74 KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        74 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus        81 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  122 (153)
T 1awc_B           81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY  122 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            666666666666666666666666666666666666666665

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=1.2e-28  Score=145.54  Aligned_cols=118  Identities=21%  Similarity=0.172  Sum_probs=110.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+++++..|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..+
T Consensus        35 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  113 (167)
T 3v31_A           35 EGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVN-EYDWNGGTPLLYAVHGN  113 (167)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-cCCCCCCCHHHHHHHcC
Confidence            488999999988         56788999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.+++++|++.|++++.++..|.||+++|+..|+.+++++|+++ ....
T Consensus       114 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          114 HVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999988 4443

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=2e-29  Score=147.56  Aligned_cols=118  Identities=13%  Similarity=0.062  Sum_probs=106.8

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCC-hhhhhhhc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY-PIHLACKN   70 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t-~l~~a~~~   70 (127)
                      .|.||||+|+..         +..+.+++.+|..|.||||+|+ .++.+++++|++.|+++. ..+..|+| |||+|+..
T Consensus        11 ~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~-~~d~~g~ttpL~~A~~~   88 (156)
T 1bi7_B           11 PSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPN-CADPATLTRPVHDAARE   88 (156)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHH
T ss_pred             cchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHHC
Confidence            478999999998         5678899999999999999985 999999999999999986 78889999 99999999


Q ss_pred             CchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           71 GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus        89 ~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~  139 (156)
T 1bi7_B           89 GFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRG  139 (156)
T ss_dssp             TCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----
T ss_pred             CCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCc
Confidence            999999999999999999999999999999999999999999988 44443

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.96  E-value=2.6e-28  Score=144.45  Aligned_cols=117  Identities=21%  Similarity=0.224  Sum_probs=93.7

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      +.+||+.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..|+
T Consensus        14 ~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   92 (169)
T 2y1l_E           14 LGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-AVDHAGMTPLRLAALFGH   92 (169)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             ccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCC
Confidence            35678888877         55677788888888888888888888888888888887775 677778888888888888


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      .+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++
T Consensus        93 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  140 (169)
T 2y1l_E           93 LEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN  140 (169)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            8888888888888888888888888888888888888888877 4443

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=2.8e-28  Score=146.83  Aligned_cols=115  Identities=19%  Similarity=0.240  Sum_probs=108.9

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..|
T Consensus        67 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  145 (192)
T 2rfm_A           67 EGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVN-DRNLEGETPLIVASKYG  145 (192)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHT
T ss_pred             cCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcC
Confidence            488999999987         56789999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +.+++++|++.|++++.++..|.||+++|+..|+.+++++|++.+
T Consensus       146 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          146 RSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999863

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=1.3e-28  Score=145.10  Aligned_cols=118  Identities=18%  Similarity=0.268  Sum_probs=95.2

Q ss_pred             CcchHHHHHHH--------hhh--cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI--------INR--VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~--~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..        +.+  +.+++..+..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..+
T Consensus         8 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   86 (165)
T 3twr_A            8 ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVH-AKDKGGLVPLHNACSYG   86 (165)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             hhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            56788888887        332  34556677778888888888888888888888888875 67778888888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus        87 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  136 (165)
T 3twr_A           87 HYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTK  136 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             cHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcc
Confidence            88888888888888888888888888888888888888888887 44433

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.96  E-value=3.2e-28  Score=142.91  Aligned_cols=111  Identities=16%  Similarity=0.136  Sum_probs=78.1

Q ss_pred             cchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCch
Q 044402            3 NTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV   73 (127)
Q Consensus         3 ~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   73 (127)
                      .||||.|+..         +..+.+++.+|..|.||||+|+. ++.+++++|++.+.++. ..+..|+||||+|+..|+.
T Consensus         6 ~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~   83 (162)
T 1ihb_A            6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFL   83 (162)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCH
T ss_pred             hhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCH
Confidence            4677777766         44556666777777777777766 77777777777776664 5666677777777777777


Q ss_pred             HHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           74 KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        74 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus        84 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  125 (162)
T 1ihb_A           84 DTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  125 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            777777777777777777777777777777777777777766

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=1.5e-27  Score=141.17  Aligned_cols=114  Identities=20%  Similarity=0.265  Sum_probs=107.9

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..+
T Consensus        46 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  124 (169)
T 2y1l_E           46 SGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVN-ANDMEGHTPLHLAAMFG  124 (169)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence            478999999987         56788999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++.++..|.||+++|+..|+.+++++|++.
T Consensus       125 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          125 HLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=4.2e-28  Score=144.69  Aligned_cols=113  Identities=17%  Similarity=0.142  Sum_probs=82.2

Q ss_pred             CcchHHHHHHH---------hhh-cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INR-VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~-~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +.++||.|+..         +.. +.+++..|..|.||||+|+..++.+++++|++.++++. ..+..|+||||+|+..|
T Consensus         5 ~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   83 (179)
T 3f6q_A            5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARIN-VMNRGDDTPLHLAASHG   83 (179)
T ss_dssp             --CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcC
Confidence            45677777776         222 34567777777777777777777777777777777765 56667777777777777


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus        84 ~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  127 (179)
T 3f6q_A           84 HRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN  127 (179)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            77777777777777777777777777777777777777777776

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=5.9e-28  Score=141.05  Aligned_cols=114  Identities=12%  Similarity=0.101  Sum_probs=85.7

Q ss_pred             CcchHHHHHHH--------hhhcC--CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI--------INRVT--KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~~~--~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..        +++..  +++..|..|.||||+ +..++.+++++|++.|.++. ..+..|.||||+|+..|
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   79 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTG   79 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            56777877777        33223  677777778888888 77788888888888777775 56777778888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhcc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISE  117 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  117 (127)
                      +.+++++|++.|++++.++..|+||||+|+..|+.+++++|++..+
T Consensus        80 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~  125 (156)
T 1bd8_A           80 FLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESD  125 (156)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhccC
Confidence            8888888888877777777778888888888888888888776633

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=9.5e-29  Score=141.81  Aligned_cols=114  Identities=20%  Similarity=0.184  Sum_probs=100.9

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|.||||+|+..+
T Consensus         9 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   87 (137)
T 3c5r_A            9 RGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-TTGYQNDSPLHDAAKNG   87 (137)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCGGGCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCccc-CcCCCCCCHHHHHHHcC
Confidence            488999999988         55678899999999999999999999999999999999885 78888999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++.+|..|.||+++|+..+..+++++|.+.
T Consensus        88 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~  131 (137)
T 3c5r_A           88 HVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN  131 (137)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC---
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccc
Confidence            99999999999999999999999999999998888888877765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.95  E-value=1.6e-27  Score=141.22  Aligned_cols=118  Identities=19%  Similarity=0.208  Sum_probs=106.5

Q ss_pred             CcchHHHHHHH---------hhhcCC-CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTK-WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~-~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +.+|||.|+..         +..+.. ++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPH-ILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCch-hhcccCCCHHHHHHHCC
Confidence            46899999988         444544 78899999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus        81 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  130 (172)
T 3v30_A           81 YTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT  130 (172)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            99999999999999999999999999999999999999999998 55443

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.95  E-value=3.9e-28  Score=145.92  Aligned_cols=113  Identities=10%  Similarity=-0.011  Sum_probs=103.4

Q ss_pred             CcchHHHHHHH-------------hhhcCCCCccccCCchhHHHHHhcCC------HHHHHHHHHhcCCCcccccccCC-
Q 044402            2 GNTAFHESLFI-------------INRVTKWKTKDWNENIPLYFATSNTY------IRGVCFLLELNGHSAIEHNIKTL-   61 (127)
Q Consensus         2 g~~~lh~a~~~-------------l~~~~~~~~~d~~g~t~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~~~~-   61 (127)
                      |+||||+|+..             +..|++++.+|..|+||||+|+..++      .+++++|++.|+++. .++..|+ 
T Consensus        38 g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin-~~d~~g~t  116 (186)
T 3t8k_A           38 KSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADIT-ALYKPYKI  116 (186)
T ss_dssp             TTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSS-SCBGGGTB
T ss_pred             CCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCC-ccCCCcCc
Confidence            89999999752             66899999999999999999999987      678999999999996 7899999 


Q ss_pred             ChhhhhhhcC-----chHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           62 YPIHLACKNG-----HVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        62 t~l~~a~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ||||+|+..+     +.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|.+.
T Consensus       117 tpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          117 VVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             CTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             hHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence            9999999954     4569999999 9999999999999999999999999999999977

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.7e-28  Score=149.78  Aligned_cols=119  Identities=9%  Similarity=0.117  Sum_probs=109.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|+||||+|+..|+
T Consensus        21 ~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n-~~d~~g~tpLh~A~~~g~   99 (229)
T 2vge_A           21 PLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN-SPDSHGWTPLHCAASCND   99 (229)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTC
T ss_pred             hhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcCC
Confidence            56889999998         56788999999999999999999999999999999999986 788899999999999999


Q ss_pred             hHHHHHHHhccCCCCccc-CCCCcHHHHH--HhcCcHHHHHHHHHh-cccccc
Q 044402           73 VKVMVEMLKKQHCPMFVT-NSGYNILHFV--VKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      .+++++|++.|++++..+ ..|+||||+|  +..|+.+++++|++. .+++..
T Consensus       100 ~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~  152 (229)
T 2vge_A          100 TVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLM  152 (229)
T ss_dssp             HHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccc
Confidence            999999999999999886 6999999999  999999999999998 555443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=2.8e-27  Score=145.99  Aligned_cols=120  Identities=13%  Similarity=0.108  Sum_probs=94.5

Q ss_pred             CCcchHHHHHHH---------hhh-cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCc----ccccccCCChhhh
Q 044402            1 MGNTAFHESLFI---------INR-VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSA----IEHNIKTLYPIHL   66 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~-~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~~t~l~~   66 (127)
                      .|.||||.|+..         +.. +.+++.+|..|.||||+|+..++.+++++|++.+++..    ...+..|+||||+
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~   81 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI   81 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence            378888888887         334 77888888888888888888888888888888877642    1345578888888


Q ss_pred             hhhcCchHHHHHHHhccCCCCcccC-------------CCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           67 ACKNGHVKVMVEMLKKQHCPMFVTN-------------SGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        67 a~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |+..|+.+++++|++.|++++..+.             .|.||||+|+..|+.+++++|+++ .+++.
T Consensus        82 A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~  149 (232)
T 2rfa_A           82 AVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA  149 (232)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             HHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC
Confidence            8888888888888888888877654             688888888888888888888887 44443

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=6.9e-27  Score=139.42  Aligned_cols=119  Identities=18%  Similarity=0.123  Sum_probs=111.2

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..+
T Consensus        38 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~  116 (179)
T 3f6q_A           38 HGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-AVNEHGNVPLHYACFWG  116 (179)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            478999999988         56789999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++.++..|.||+++|+..++.+++++|++. .+++.
T Consensus       117 ~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          117 QDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             CHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSC
T ss_pred             CHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCccc
Confidence            99999999999999999999999999999999999999999998 44443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.95  E-value=1e-27  Score=149.97  Aligned_cols=114  Identities=15%  Similarity=0.219  Sum_probs=106.8

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccC-------------CchhHHHHHhcCCHHHHHHHHH---hcCCCcccc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWN-------------ENIPLYFATSNTYIRGVCFLLE---LNGHSAIEH   56 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~-------------g~t~l~~a~~~~~~~~~~~ll~---~~~~~~~~~   56 (127)
                      |.||||+|+..         +..|++++.+|..             |.||||+|+..++.+++++|++   .|+++. ..
T Consensus        90 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n-~~  168 (256)
T 2etb_A           90 GHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLE-AT  168 (256)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-CC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcC-cc
Confidence            89999999988         5678899998876             9999999999999999999999   899986 78


Q ss_pred             cccCCChhhhhhh--cCchH-------HHHHHHhccCCC-------CcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           57 NIKTLYPIHLACK--NGHVK-------VMVEMLKKQHCP-------MFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        57 ~~~~~t~l~~a~~--~~~~~-------~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +..|+||||+|+.  .++.+       ++++|++.|+++       +.+|..|+||||+|+..|+.+++++|++++
T Consensus       169 d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          169 DSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             CTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            9999999999999  78888       999999999999       899999999999999999999999999984

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=7.9e-27  Score=143.81  Aligned_cols=113  Identities=18%  Similarity=0.207  Sum_probs=73.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..|+
T Consensus        73 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  151 (231)
T 3aji_A           73 GWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGN  151 (231)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             CCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCC
Confidence            55666666555         34455666666666666666666666666666666666654 455666666666666666


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++.++..|.||||+|+..++.+++++|+++
T Consensus       152 ~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  194 (231)
T 3aji_A          152 LKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ  194 (231)
T ss_dssp             HHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHC
Confidence            6666666666666666666667777777777777777777666

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.95  E-value=3.5e-27  Score=137.54  Aligned_cols=111  Identities=14%  Similarity=0.199  Sum_probs=105.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..+
T Consensus        33 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  111 (153)
T 1awc_B           33 LGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVN-AKDMLKMTALHWATEHN  111 (153)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence            488999999998         56788999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAI  112 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  112 (127)
                      +.+++++|++.|++++.++..|.||+++|+..|+.+++++|
T Consensus       112 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          112 HQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999999999999999999999999999987

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.95  E-value=9.3e-28  Score=150.38  Aligned_cols=115  Identities=18%  Similarity=0.241  Sum_probs=106.3

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccc--------------cCCchhHHHHHhcCCHHHHHHHHH---hcCCCcc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKD--------------WNENIPLYFATSNTYIRGVCFLLE---LNGHSAI   54 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d--------------~~g~t~l~~a~~~~~~~~~~~ll~---~~~~~~~   54 (127)
                      .|+||||+|+..         +..|++++.++              ..|.||||+|+..++.+++++|++   .|+++. 
T Consensus        92 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~-  170 (260)
T 3jxi_A           92 RGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLR-  170 (260)
T ss_dssp             ESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCc-
Confidence            378999999988         56789999988              689999999999999999999999   889886 


Q ss_pred             cccccCCChhhhhhhcCc---------hHHHHHHHhccCCC-------CcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           55 EHNIKTLYPIHLACKNGH---------VKVMVEMLKKQHCP-------MFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        55 ~~~~~~~t~l~~a~~~~~---------~~~~~~l~~~~~~~-------~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      ..+..|+||||+|+..++         .+++++|++.|+++       +.++..|+||||+|+..|+.+++++|++++
T Consensus       171 ~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          171 RQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             CCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            789999999999998877         79999999999998       679999999999999999999999999983

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.95  E-value=8.7e-27  Score=143.29  Aligned_cols=118  Identities=18%  Similarity=0.226  Sum_probs=101.5

Q ss_pred             CCcchHHHHHHH---------hhhc--CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhh
Q 044402            1 MGNTAFHESLFI---------INRV--TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACK   69 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~--~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~   69 (127)
                      .|.||||.|+..         +..+  .+++.+|..|.||||+|+..++.+++++|++.|.++. ..+..|+||||+|+.
T Consensus        71 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           71 SGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-IKDKFNQIPLHRAAS  149 (228)
T ss_dssp             TSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc-ccCCCCCCHHHHHHH
Confidence            378899999887         4455  6788888899999999999999999999999988885 678889999999999


Q ss_pred             cCchHHHHHHHhcc-CCCCcccCCCCcHHHHHHhcCcHHHHHHHH-Hh-cccc
Q 044402           70 NGHVKVMVEMLKKQ-HCPMFVTNSGYNILHFVVKNGHVNMVKAII-KI-SETN  119 (127)
Q Consensus        70 ~~~~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll-~~-~~~~  119 (127)
                      .|+.+++++|++.| ++++.++..|+||||+|+..|+.+++++|+ +. .+++
T Consensus       150 ~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~  202 (228)
T 2dzn_A          150 VGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYD  202 (228)
T ss_dssp             TTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSC
T ss_pred             cCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCC
Confidence            99999999999998 888999999999999999999999999999 55 4443

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=4.1e-27  Score=147.20  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=48.9

Q ss_pred             hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCC
Q 044402           15 RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGY   94 (127)
Q Consensus        15 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (127)
                      .+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.|++++.+|..|.
T Consensus       146 ~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~  224 (253)
T 1yyh_A          146 SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDR  224 (253)
T ss_dssp             TTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCC
Confidence            344444444445555555555555555555555544443 3444445555555555555555555555555544455555


Q ss_pred             cHHHHHHhcCcHHHHHHHHH
Q 044402           95 NILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        95 t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      ||+++|+..|+.+++++|..
T Consensus       225 tpl~~A~~~g~~~i~~~l~~  244 (253)
T 1yyh_A          225 LPRDIAQERMHHDIVRLLDL  244 (253)
T ss_dssp             CHHHHHHHTTCHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHH
Confidence            55555555555555554443

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=4.9e-27  Score=138.33  Aligned_cols=114  Identities=17%  Similarity=0.158  Sum_probs=106.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|+||||+|+..|
T Consensus        41 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  119 (165)
T 3twr_A           41 RQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVN-VADLWKFTPLHEAAAKG  119 (165)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCC-CcCCCCCCHHHHHHHcC
Confidence            378999999988         56788999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +.+++++|++.|++++.++..|.||+++|+. ++.+++++|++++
T Consensus       120 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~g  163 (165)
T 3twr_A          120 KYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDA  163 (165)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC-
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhcc
Confidence            9999999999999999999999999999877 8899999999775

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=8.5e-27  Score=143.00  Aligned_cols=113  Identities=15%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||||+|+..++
T Consensus        92 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  170 (223)
T 2f8y_A           92 GTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-MQNNREETPLFLAAREGS  170 (223)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHTC
T ss_pred             CCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCcCHHHHHHHcCC
Confidence            44555555544         33445555555555555555555555555555555555553 445555555555555555


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++.++..|.||+++|+..++.+++++|++.
T Consensus       171 ~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~  213 (223)
T 2f8y_A          171 YETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY  213 (223)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence            5555555555555555555555555555555555555555554

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=2.8e-27  Score=138.85  Aligned_cols=115  Identities=19%  Similarity=0.200  Sum_probs=107.2

Q ss_pred             CCcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            1 MGNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      .|.||||.|+..        +..+.+++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..|+
T Consensus        37 ~g~t~L~~A~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~  115 (162)
T 1ihb_A           37 FGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGH  115 (162)
T ss_dssp             TSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             cCccHHHHHHcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCC
Confidence            478999998754        66788999999999999999999999999999999999986 788899999999999999


Q ss_pred             hHHHHHHHhccCCC-CcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           73 VKVMVEMLKKQHCP-MFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        73 ~~~~~~l~~~~~~~-~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+++++|++.|++. +.++..|.|||++|+..|+.+++++|++++
T Consensus       116 ~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             HHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999984 999999999999999999999999999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.95  E-value=4e-27  Score=145.72  Aligned_cols=114  Identities=18%  Similarity=0.199  Sum_probs=77.2

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCC-----cccccccCCChhhhh
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHS-----AIEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-----~~~~~~~~~t~l~~a   67 (127)
                      |.||||+|+..         +..|++++.+|..|.||||+|+..++.+++++|++.+..+     ....+..|.||||+|
T Consensus        45 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A  124 (236)
T 1ikn_D           45 QQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLA  124 (236)
T ss_dssp             CCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHH
Confidence            56777777665         4455667777777777777777777777777777766532     123455567777777


Q ss_pred             hhcCchHHHHHHHhccCCCCcccC-CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           68 CKNGHVKVMVEMLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +..|+.+++++|++.|++++.++. .|.||||+|+..|+.+++++|+++
T Consensus       125 ~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  173 (236)
T 1ikn_D          125 SIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC  173 (236)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            777777777777777777766665 677777777777777777777766

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=3.6e-27  Score=137.70  Aligned_cols=112  Identities=18%  Similarity=0.251  Sum_probs=104.7

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||. +..         +..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|+||||+|+..|
T Consensus        35 ~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  112 (156)
T 1bd8_A           35 FGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEG  112 (156)
T ss_dssp             TSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHT
T ss_pred             CCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHhC
Confidence            48899999 544         66789999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++. ++++.++..|.|||++|+..|+.+++++|+++
T Consensus       113 ~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          113 HTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             hHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            99999999999 99999999999999999999999999999874

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=3.3e-27  Score=149.46  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHh-ccCCCCcccCCC
Q 044402           15 RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK-KQHCPMFVTNSG   93 (127)
Q Consensus        15 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~   93 (127)
                      .+.+++..|..|.||||+|+..|+.+++++|++.|+++. ..+..|+||||+|+..|+.+++++|++ .|++++.+|..|
T Consensus       172 ~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n-~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g  250 (276)
T 4hbd_A          172 LGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN-VQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDG  250 (276)
T ss_dssp             HSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTS
T ss_pred             cCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCC
Confidence            344455555667777777777777777777777777764 566677777777777777777777777 677777777777


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHhc
Q 044402           94 YNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .|||++|+..|+.+++++|+++.
T Consensus       251 ~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          251 STALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHhcc
Confidence            77777777777777777777664

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.95  E-value=4.8e-27  Score=146.87  Aligned_cols=97  Identities=14%  Similarity=0.125  Sum_probs=51.5

Q ss_pred             CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHH
Q 044402           18 KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNIL   97 (127)
Q Consensus        18 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l   97 (127)
                      +++.++..|.||||+|+..++.+++++|++.|.++. ..+..|+||||+|+..|+.+++++|++.|++++.++..|.|||
T Consensus       116 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL  194 (253)
T 1yyh_A          116 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL  194 (253)
T ss_dssp             CTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             CccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHH
Confidence            344444444444444444444444444444444443 3444555555555555555555555555555555555555555


Q ss_pred             HHHHhcCcHHHHHHHHHh
Q 044402           98 HFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        98 ~~a~~~~~~~~~~~Ll~~  115 (127)
                      |+|+..|+.+++++|+++
T Consensus       195 ~~A~~~~~~~~v~~Ll~~  212 (253)
T 1yyh_A          195 FLAAREGSYETAKVLLDH  212 (253)
T ss_dssp             HHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHHc
Confidence            555555555555555555

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=8e-28  Score=135.68  Aligned_cols=107  Identities=16%  Similarity=0.131  Sum_probs=91.2

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|+||||+|+..+
T Consensus         6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~d~~g~tpL~~A~~~~   84 (123)
T 3aaa_C            6 MCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEG   84 (123)
T ss_dssp             -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcC
Confidence            367899999887         55678888899999999999999999999999999998885 67888999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNM  108 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~  108 (127)
                      +.+++++|++.|++++.++..|.||+++|...+..++
T Consensus        85 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~l  121 (123)
T 3aaa_C           85 HVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKAL  121 (123)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCHHHHHH
Confidence            9999999999999999999999999999855444333

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=4.7e-27  Score=148.28  Aligned_cols=103  Identities=15%  Similarity=0.135  Sum_probs=94.3

Q ss_pred             CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc-ccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcH
Q 044402           18 KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN-IKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNI   96 (127)
Q Consensus        18 ~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~   96 (127)
                      +++.+|..|.||||+|+..++.+++++|++.|+++. ..+ ..|+||||+|+..|+.+++++|++.|++++.++..|.||
T Consensus       150 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tp  228 (282)
T 1oy3_D          150 QLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (282)
T ss_dssp             GTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCH
Confidence            367788999999999999999999999999999986 455 459999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           97 LHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        97 l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ||+|+..|+.+++++|+++ .+++..
T Consensus       229 L~~A~~~~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          229 LGSALLRPNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCCCCCC
T ss_pred             HHHHHHcCCcHHHHHHHHcCCCcCcC
Confidence            9999999999999999999 555443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=6.4e-28  Score=148.23  Aligned_cols=114  Identities=14%  Similarity=0.069  Sum_probs=102.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++. ++++. ..+..|+||||+|+..|
T Consensus        73 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~-~~d~~g~tpL~~A~~~~  151 (222)
T 3ehr_A           73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELN-QQNKLGDTALHAAAWKG  151 (222)
T ss_dssp             ESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCC-CCCTTSCCHHHHHHHHT
T ss_pred             cccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCcc-ccCCCCCCHHHHHHHcC
Confidence            68999999988         557889999999999999999999999999999998 88885 78999999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +.+++++|++.|++++.++..|.|||++|+..+..++++.|++.+
T Consensus       152 ~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          152 YADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             CHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             CHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999873

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.95  E-value=2.1e-26  Score=139.31  Aligned_cols=118  Identities=18%  Similarity=0.229  Sum_probs=82.8

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+..         +..|++++.+|..|.||||+|+..++.+++++|++.+.......+..|.||||+|+..++
T Consensus        39 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  118 (201)
T 3hra_A           39 GNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGH  118 (201)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCC
Confidence            66777777776         455677777777777777777777777777777744432223566667777777777777


Q ss_pred             hHHHHHHHhcc-CCCCcccCCCCcHHHHHHhcCc-----HHHHHHHHHh-cccc
Q 044402           73 VKVMVEMLKKQ-HCPMFVTNSGYNILHFVVKNGH-----VNMVKAIIKI-SETN  119 (127)
Q Consensus        73 ~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~Ll~~-~~~~  119 (127)
                      .+++++|++.| ++++.++..|.||||+|+..+.     .+++++|+++ .+++
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~  172 (201)
T 3hra_A          119 IDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS  172 (201)
T ss_dssp             HHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC
Confidence            77777777777 6777777777777777777666     7777777776 4443

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.95  E-value=1.5e-26  Score=142.57  Aligned_cols=119  Identities=23%  Similarity=0.189  Sum_probs=103.1

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||+|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..+
T Consensus        39 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  117 (231)
T 3aji_A           39 DSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN-AVNQNGCTPLHYAASKN  117 (231)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcC
Confidence            478899999887         55678888889999999999999999999999999988885 67888899999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++.++..|.||||+|+..|+.+++++|++. .+++.
T Consensus       118 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  167 (231)
T 3aji_A          118 RHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNI  167 (231)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccc
Confidence            99999999999999988899999999999999999999999988 44443

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.95  E-value=1.4e-26  Score=141.98  Aligned_cols=114  Identities=17%  Similarity=0.149  Sum_probs=56.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.+.......+..+.||||+|+..++
T Consensus        25 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  104 (223)
T 2f8y_A           25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV  104 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCc
Confidence            45555555554         334445555555555555555555555555555555442212334444455555555455


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++..+..|.||||+|+..|+.+++++|+++
T Consensus       105 ~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  147 (223)
T 2f8y_A          105 EGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN  147 (223)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            5555555444444444444444444444444444444444444

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.95  E-value=2.8e-27  Score=141.70  Aligned_cols=101  Identities=14%  Similarity=0.069  Sum_probs=93.9

Q ss_pred             CcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc-ccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN-IKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..        ++++.+++.+|..|.||||+|+..++.+++++|++.|+++. ..+ ..|+||||+|+..|+
T Consensus        44 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~~~~~g~tpL~~A~~~~~  122 (183)
T 3deo_A           44 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVR  122 (183)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHTTTSCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCSSSSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHhcCc
Confidence            67999999987        55588999999999999999999999999999999999986 455 889999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKN  103 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  103 (127)
                      .+++++|++.|++++.+|..|.||||+|+..
T Consensus       123 ~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          123 PEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            9999999999999999999999999998876

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.95  E-value=9e-27  Score=152.08  Aligned_cols=115  Identities=16%  Similarity=0.089  Sum_probs=108.1

Q ss_pred             CCcchHHHHHHH-----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCC-----CcccccccCCChh
Q 044402            1 MGNTAFHESLFI-----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH-----SAIEHNIKTLYPI   64 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~-----~~~~~~~~~~t~l   64 (127)
                      .|.||||+|+..           +..+++++.+|..|.||||+|+..++.+++++|++.+++     +. ..+..|+|||
T Consensus       137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~-~~~~~g~t~L  215 (364)
T 3ljn_A          137 KGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLD-YANKQGNSHL  215 (364)
T ss_dssp             SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTT-CCCTTCCCTT
T ss_pred             CCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccc-ccCCCCCcHH
Confidence            378999999874           567899999999999999999999999999999999988     64 7888999999


Q ss_pred             hhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           65 HLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      |+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++
T Consensus       216 ~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~  267 (364)
T 3ljn_A          216 HWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKT  267 (364)
T ss_dssp             HHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999999999984

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.1e-27  Score=147.51  Aligned_cols=100  Identities=14%  Similarity=0.093  Sum_probs=52.0

Q ss_pred             hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCC
Q 044402           15 RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGY   94 (127)
Q Consensus        15 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (127)
                      .+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|+||||+|+..|+.+++++|++.|++++.++..+.
T Consensus        59 ~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~  137 (239)
T 1ycs_B           59 EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDM  137 (239)
T ss_dssp             TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSC
T ss_pred             cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCC
Confidence            344555555555555555555555555555555555543 4444555555555555555555555555555555544443


Q ss_pred             -cHHHHH--HhcCcHHHHHHHHHh
Q 044402           95 -NILHFV--VKNGHVNMVKAIIKI  115 (127)
Q Consensus        95 -t~l~~a--~~~~~~~~~~~Ll~~  115 (127)
                       ||+|+|  +..|+.+++++|+++
T Consensus       138 ~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B          138 QTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             CCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             cchHHHHHHhhhccHHHHHHHHHh
Confidence             555555  444555555555544

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.95  E-value=2.3e-27  Score=147.41  Aligned_cols=120  Identities=13%  Similarity=0.048  Sum_probs=90.1

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      .|.||||.|++.         +.+|++++. +..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|
T Consensus         4 ~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~t~L~~A~~~g   81 (239)
T 1ycs_B            4 TGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAG   81 (239)
T ss_dssp             ----------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHT
T ss_pred             cccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcC
Confidence            489999999998         667788876 4788999999999999999999999999886 78899999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ .+++...
T Consensus        82 ~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~  133 (239)
T 1ycs_B           82 HTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMT  133 (239)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceec
Confidence            99999999999999999999999999999999999999999998 5555443

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.95  E-value=1.3e-26  Score=143.01  Aligned_cols=113  Identities=14%  Similarity=0.192  Sum_probs=70.6

Q ss_pred             CcchHHHHHHH---------hhhcCCC-----CccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccc---------
Q 044402            2 GNTAFHESLFI---------INRVTKW-----KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNI---------   58 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~-----~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~---------   58 (127)
                      |.||||+|+..         +..+.++     +.+|..|.||||+|+..++.+++++|++.|+++. ..+.         
T Consensus        37 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~~~~~~~~  115 (232)
T 2rfa_A           37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVS-ARATGSVFHYRPH  115 (232)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCCSGGGSCCTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCC-cccCCcceeeccc
Confidence            56666666665         3344443     4556666666666666666666666666666554 2222         


Q ss_pred             ----cCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHH----HHHHHh
Q 044402           59 ----KTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMV----KAIIKI  115 (127)
Q Consensus        59 ----~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~----~~Ll~~  115 (127)
                          .|.||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..++.+++    ++|++.
T Consensus       116 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~  180 (232)
T 2rfa_A          116 NLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSY  180 (232)
T ss_dssp             CSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc
Confidence                466666666666666666666666666666666666666666666666655    666655

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.95  E-value=4.1e-27  Score=148.51  Aligned_cols=116  Identities=16%  Similarity=0.175  Sum_probs=106.5

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCcccc--------------CCchhHHHHHhcCCHHHHHHHHH---hcCCCcc
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDW--------------NENIPLYFATSNTYIRGVCFLLE---LNGHSAI   54 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~--------------~g~t~l~~a~~~~~~~~~~~ll~---~~~~~~~   54 (127)
                      .|.||||+|+..         +..|++++.++.              .|.||||+|+..++.+++++|++   .|+++. 
T Consensus       100 ~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~-  178 (273)
T 2pnn_A          100 KGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADIS-  178 (273)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTT-
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCce-
Confidence            388999999987         567889999887              79999999999999999999999   899886 


Q ss_pred             cccccCCChhhhhhhcCc---------hHHHHHHHhccCCCC-------cccCCCCcHHHHHHhcCcHHHHHHHHHhcc
Q 044402           55 EHNIKTLYPIHLACKNGH---------VKVMVEMLKKQHCPM-------FVTNSGYNILHFVVKNGHVNMVKAIIKISE  117 (127)
Q Consensus        55 ~~~~~~~t~l~~a~~~~~---------~~~~~~l~~~~~~~~-------~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  117 (127)
                      ..+..|+||||+|+..++         .+++++|++.|++++       .+|..|+||||+|+..|+.+++++|++++.
T Consensus       179 ~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga  257 (273)
T 2pnn_A          179 ARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREI  257 (273)
T ss_dssp             CCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             eeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCC
Confidence            788999999999999888         799999999999986       589999999999999999999999999843

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.95  E-value=9.4e-27  Score=146.91  Aligned_cols=60  Identities=15%  Similarity=0.184  Sum_probs=37.2

Q ss_pred             ccccCCChhhhhhhcCchHHHHHHHhccCCCCcccC-CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           56 HNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        56 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+..|.||||+|+..|+.+++++|++.|++++..+. .|+||||+|+..|+.+++++|+++
T Consensus       154 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  214 (282)
T 1oy3_D          154 ENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKA  214 (282)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            344556666666666666666666666666665553 366666666666666666666665

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.95  E-value=3.8e-27  Score=146.90  Aligned_cols=113  Identities=13%  Similarity=0.085  Sum_probs=104.5

Q ss_pred             CcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc-ccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN-IKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..        ++.+.+++.+|..|.||||+|+..|+.+++++|++.|+++. ..+ ..|+||||+|+..|+
T Consensus        45 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~g~t~L~~A~~~g~  123 (244)
T 3ui2_A           45 YETPWWTAARKADEQALSQLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLD-HRDMRGGLTALHMAAGYVR  123 (244)
T ss_dssp             HHHHHHHHHTTTCHHHHHHTTTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT-CCCSSSCCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-cCCCCCCCCHHHHHHHcCC
Confidence            67999999987        55588999999999999999999999999999999999996 455 789999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHH----------------hcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVV----------------KNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~----------------~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++.++..|.||||+|+                ..|+.+++++|+++
T Consensus       124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          124 PEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            99999999999999999999999999887                66889999999986

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.94  E-value=1.9e-26  Score=139.50  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=105.2

Q ss_pred             CCcchHHHHHHH---------h-hhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhc-CCCcccccccCCChhhhhhh
Q 044402            1 MGNTAFHESLFI---------I-NRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELN-GHSAIEHNIKTLYPIHLACK   69 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l-~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~t~l~~a~~   69 (127)
                      .|.||||+|+..         + ..+.+++.+|..|.||||+|+..++.+++++|++.+ .++. ..+..|+||||+|+.
T Consensus        71 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~~A~~  149 (201)
T 3hra_A           71 ISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID-FQNDFGYTALIEAVG  149 (201)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT-CCCTTSCCHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC-CCCCCCCCHHHHHHH
Confidence            478999999988         3 344589999999999999999999999999999999 6664 788899999999999


Q ss_pred             cCc-----hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           70 NGH-----VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        70 ~~~-----~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+.     .+++++|++.|++++.++..|.|||++|+..|+.+++++|+++|
T Consensus       150 ~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          150 LREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQYN  201 (201)
T ss_dssp             SSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred             hccchhhHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence            987     99999999999999999999999999999999999999999753

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.94  E-value=4e-27  Score=148.70  Aligned_cols=119  Identities=20%  Similarity=0.246  Sum_probs=100.1

Q ss_pred             CcchHHHHHHH----------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI----------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~----------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..          +..|+++|.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||+++|+..+
T Consensus        52 ~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-~~~~~g~t~l~~a~~~~  130 (269)
T 4b93_B           52 FCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAG-ARNADQAVPLHLACQQG  130 (269)
T ss_dssp             -----------------------CCCCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-ccCCCCCCccccccccC
Confidence            67899998865          56789999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++ .+++..
T Consensus       131 ~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~  181 (269)
T 4b93_B          131 HFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINAS  181 (269)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCB
T ss_pred             hHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCcc
Confidence            99999999999999999999999999999999999999999998 555543

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.94  E-value=2.8e-26  Score=146.04  Aligned_cols=120  Identities=18%  Similarity=0.233  Sum_probs=101.3

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccc----------------
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIE----------------   55 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~----------------   55 (127)
                      .|.||||+|+..         +..|++++.+|..|.||||+|+..|+.+++++|++.|+++...                
T Consensus        72 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~  151 (299)
T 1s70_B           72 DGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM  151 (299)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcch
Confidence            478999999887         5677889999999999999999999999999999988765310                


Q ss_pred             -------------------------------------------ccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCC
Q 044402           56 -------------------------------------------HNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS   92 (127)
Q Consensus        56 -------------------------------------------~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   92 (127)
                                                                 .+..|.||||+|+..|+.+++++|++.|++++.+|..
T Consensus       152 ~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~  231 (299)
T 1s70_B          152 EELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYD  231 (299)
T ss_dssp             HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTT
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCC
Confidence                                                       1235778899999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           93 GYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |.||||+|+..|+.+++++|+++ .+++.
T Consensus       232 g~tpL~~A~~~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          232 GWTPLHAAAHWGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CCcHHHHHHhcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999988 44443

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.94  E-value=1.7e-26  Score=124.42  Aligned_cols=91  Identities=29%  Similarity=0.437  Sum_probs=86.0

Q ss_pred             CCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcC
Q 044402           25 NENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG  104 (127)
Q Consensus        25 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  104 (127)
                      .|+||||+|+..++.+++++|++.++++. .++..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            47899999999999999999999999986 78899999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHhc
Q 044402          105 HVNMVKAIIKIS  116 (127)
Q Consensus       105 ~~~~~~~Ll~~~  116 (127)
                      +.+++++|++++
T Consensus        80 ~~~~~~~Ll~~g   91 (93)
T 1n0q_A           80 HLEVVKLLLEAG   91 (93)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            999999999874

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.94  E-value=8.6e-27  Score=145.77  Aligned_cols=120  Identities=9%  Similarity=0.025  Sum_probs=105.7

Q ss_pred             CCcchHHHHHHH-------------hhhcCCCCc----cccCCchhHHHHHhc---CCHHHHHHHHHhcCCCccc-----
Q 044402            1 MGNTAFHESLFI-------------INRVTKWKT----KDWNENIPLYFATSN---TYIRGVCFLLELNGHSAIE-----   55 (127)
Q Consensus         1 ~g~~~lh~a~~~-------------l~~~~~~~~----~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~-----   55 (127)
                      +|+||||.|+..             +..+.+++.    +|..|.||||+|+..   ++.+++++|++.++++...     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~   80 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVN   80 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcc
Confidence            589999999998             235788998    899999999999999   9999999999998766311     


Q ss_pred             -----ccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCC-------------CCcHHHHHHhcCcHHHHHHHHH---
Q 044402           56 -----HNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-------------GYNILHFVVKNGHVNMVKAIIK---  114 (127)
Q Consensus        56 -----~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~t~l~~a~~~~~~~~~~~Ll~---  114 (127)
                           .+..|.||||+|+..|+.+++++|++.|++++.++..             |.||||+|+..|+.+++++|++   
T Consensus        81 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~  160 (256)
T 2etb_A           81 AQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPH  160 (256)
T ss_dssp             CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence                 2367999999999999999999999999999988876             9999999999999999999999   


Q ss_pred             h-ccccc
Q 044402          115 I-SETNI  120 (127)
Q Consensus       115 ~-~~~~~  120 (127)
                      . .+++.
T Consensus       161 ~ga~~n~  167 (256)
T 2etb_A          161 QPASLEA  167 (256)
T ss_dssp             CCCCTTC
T ss_pred             cCCCcCc
Confidence            6 44443

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.2e-26  Score=146.92  Aligned_cols=119  Identities=19%  Similarity=0.259  Sum_probs=107.3

Q ss_pred             CCcchHHHHHHH---------hhhcC-CCCccccCCchhHHHHH-----hcCCHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            1 MGNTAFHESLFI---------INRVT-KWKTKDWNENIPLYFAT-----SNTYIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~-~~~~~d~~g~t~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      .|.||||+|+..         +..+. +++..|..|.||||+|+     ..++.+++++|++.|.... ..+..|+||||
T Consensus       110 ~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~-~~~~~g~tpLh  188 (276)
T 4hbd_A          110 NGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINA-KASQAGQTALM  188 (276)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTC-CCTTTCCCHHH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCcc-ccCCCCCCHHH
Confidence            489999999988         55666 89999999999999999     6688999999999998775 67888999999


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH-h-ccccc
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK-I-SETNI  120 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~-~-~~~~~  120 (127)
                      +|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++ . .+++.
T Consensus       189 ~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTC
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcC
Confidence            9999999999999999999999999999999999999999999999998 4 44443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.94  E-value=1.7e-26  Score=142.92  Aligned_cols=116  Identities=19%  Similarity=0.196  Sum_probs=105.2

Q ss_pred             CCcchHHHHHHH---------hhhcCC------CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccc-cCCChh
Q 044402            1 MGNTAFHESLFI---------INRVTK------WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNI-KTLYPI   64 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~------~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~t~l   64 (127)
                      .|.||||+|+..         +..+.+      ++..+..|.||||+|+..++.+++++|++.|+++. ..+. .|+|||
T Consensus        77 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~~g~tpL  155 (236)
T 1ikn_D           77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN-AQEPCNGRTAL  155 (236)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT-CCCTTTCCCHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCCHH
Confidence            488999999988         333433      46688899999999999999999999999999986 5665 899999


Q ss_pred             hhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhcc
Q 044402           65 HLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISE  117 (127)
Q Consensus        65 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  117 (127)
                      |+|+..|+.+++++|++.|++++.++..|.|||++|+..++.+++++|++++.
T Consensus       156 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga  208 (236)
T 1ikn_D          156 HLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTL  208 (236)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcch
Confidence            99999999999999999999999999999999999999999999999999844

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=6.5e-26  Score=140.34  Aligned_cols=117  Identities=17%  Similarity=0.226  Sum_probs=81.3

Q ss_pred             CcchHHHHHHH---------hhhcC----CCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc-ccCCChhhhh
Q 044402            2 GNTAFHESLFI---------INRVT----KWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN-IKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~----~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-~~~~t~l~~a   67 (127)
                      |.||||.|+..         +..+.    +++..|..|.||||+|+..++.+++++|++.+.++. ..+ ..|.||||+|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~g~t~L~~A  157 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID-AVDIKSGRSPLIHA  157 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTTCCCHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc-cccccCCCcHHHHH
Confidence            55666666655         22333    556666677777777777777777777777776664 344 5677777777


Q ss_pred             hhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           68 CKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++ .+++
T Consensus       158 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~  210 (241)
T 1k1a_A          158 VENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS  210 (241)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCC
Confidence            777777777777777777777777777777777777777777777777 4433

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=4.9e-26  Score=144.60  Aligned_cols=99  Identities=17%  Similarity=0.132  Sum_probs=55.8

Q ss_pred             hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCC
Q 044402           15 RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGY   94 (127)
Q Consensus        15 ~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~   94 (127)
                      .+++++.+|..|.||||+|+..++.+++++|++.+.++.  .+..|.||||+|+..|+.+++++|++.|++++.++..|.
T Consensus       114 ~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~  191 (285)
T 3d9h_A          114 HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--PESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLG  191 (285)
T ss_dssp             TTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSS--CSCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTB
T ss_pred             CCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence            344555555555555555555555555555555554442  223355555555555566666666666666666666666


Q ss_pred             cHHHHHHhcCcHHHHHHHHHh
Q 044402           95 NILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        95 t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ||||+|+..|+.+++++|++.
T Consensus       192 t~L~~A~~~~~~~~v~~Ll~~  212 (285)
T 3d9h_A          192 TPLYLACENQQRACVKKLLES  212 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHT
T ss_pred             CHHHHHHHcCcHHHHHHHHHC
Confidence            666666666666666666655

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=4.4e-26  Score=151.81  Aligned_cols=114  Identities=23%  Similarity=0.357  Sum_probs=100.2

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +.++++++..+..|.||||+|+..|+.+++++|++.++++. ..+..|+||||+|+..|
T Consensus        13 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g   91 (437)
T 1n11_A           13 SGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIG   91 (437)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSS-CCCTTSCCHHHHHHHHT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHCC
Confidence            478999999988         55678888899999999999999999999999999998885 67888999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++.
T Consensus        92 ~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  135 (437)
T 1n11_A           92 HTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK  135 (437)
T ss_dssp             CHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999988888899999999999999999998887

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=7.2e-26  Score=139.98  Aligned_cols=113  Identities=18%  Similarity=0.153  Sum_probs=75.0

Q ss_pred             CcchHHHHHHH---------hhhc-CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRV-TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~-~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..         +..+ .+++..+..|.||||+|+..++.+++++|++.|.++. ..+..|.||||+|+..|
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~  155 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-IRDNEENICLHWAAFSG  155 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHC
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCCHHHHHHHCC
Confidence            55666666655         2233 4566666666666666666666666666666666664 55666667777777777


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++++.++..|.||||+|+..++.+++++|+++
T Consensus       156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (237)
T 3b7b_A          156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR  199 (237)
T ss_dssp             CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHc
Confidence            77777777777777766676777777777777777777777766

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.94  E-value=1.2e-26  Score=147.43  Aligned_cols=111  Identities=18%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||+|+..         +..+++++.+|  |.||||+|+..++.+++++|++.|+++. ..+..|+||||+|+..|+
T Consensus        31 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~  107 (285)
T 3kea_A           31 GHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDS-QFDDKGNTALYYAVDSGN  107 (285)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTSSSCHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCcHHHHHHHcCC
Confidence            66777777665         34455555553  6666666666666666666666666664 456666666666666666


Q ss_pred             hHHHHHHHhccCCCCcccCCC-CcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSG-YNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~-~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++.++..| .||||+|+..|+.+++++|+++
T Consensus       108 ~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~  151 (285)
T 3kea_A          108 MQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE  151 (285)
T ss_dssp             HHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhC
Confidence            666666666666666666666 5666666666666666666665

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.94  E-value=1.6e-25  Score=138.45  Aligned_cols=113  Identities=19%  Similarity=0.272  Sum_probs=66.8

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+.+++..+..|.||||+|+..++.+++++|++.|.++. ..+..|.||||+|+..|+
T Consensus        11 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~   89 (237)
T 3b7b_A           11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-PKDAEGSTCLHLAAKKGH   89 (237)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCC-CCCTTSCCHHHHHHHTTC
T ss_pred             CCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCC-CCCCCCCcHHHHHHHcCC
Confidence            56666666665         34455666666666666666666666666666666665553 445555566666666666


Q ss_pred             hHHHHHHHhcc-CCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQ-HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.| .+++..+..|.||||+|+..++.+++++|++.
T Consensus        90 ~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  133 (237)
T 3b7b_A           90 YEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSK  133 (237)
T ss_dssp             HHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            66666555555 45555555555555555555555555555555

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.94  E-value=8.3e-26  Score=143.57  Aligned_cols=117  Identities=17%  Similarity=0.147  Sum_probs=88.3

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|+||||+|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.++++. ..+..|+||||+|+..|
T Consensus        58 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~~  136 (285)
T 3d9h_A           58 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVSG  136 (285)
T ss_dssp             CSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHT
T ss_pred             cCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHcC
Confidence            467888888776         45567777778888888888888888888888888877775 66777788888888888


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.+++++|++.|++++..+ .|.||||+|+..|+.+++++|++. .+++
T Consensus       137 ~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~  184 (285)
T 3d9h_A          137 SWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNID  184 (285)
T ss_dssp             CHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            8888888888777776543 377888888888888888888877 4433

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.94  E-value=8e-26  Score=150.56  Aligned_cols=113  Identities=19%  Similarity=0.248  Sum_probs=80.8

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+++++..+..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..|+
T Consensus       245 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~  323 (437)
T 1n11_A          245 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGN  323 (437)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSC
T ss_pred             CCCHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC-CCCCCCCCHHHHHHHcCc
Confidence            56667766665         34556666677777777777777777777777777776664 566667777777777777


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++.++..|.||||+|+..|+.+++++|+++
T Consensus       324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~  366 (437)
T 1n11_A          324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN  366 (437)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHC
Confidence            7777777777777777777777777777777777777777776

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.94  E-value=9.7e-26  Score=138.62  Aligned_cols=94  Identities=14%  Similarity=0.079  Sum_probs=57.6

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhc--CCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELN--GHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHF   99 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~   99 (127)
                      .+..|.||||+|+..++.+++++|++.+  .++. ..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~  146 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-KITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR  146 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc-cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHH
Confidence            4555666666666666666666666655  4443 445556666666666666666666666666666666666666666


Q ss_pred             HHhcCcHHHHHHHHHhc
Q 044402          100 VVKNGHVNMVKAIIKIS  116 (127)
Q Consensus       100 a~~~~~~~~~~~Ll~~~  116 (127)
                      |+..|+.+++++|++.+
T Consensus       147 A~~~~~~~~v~~Ll~~g  163 (228)
T 2dzn_A          147 AASVGSLKLIELLCGLG  163 (228)
T ss_dssp             HHHTTCHHHHHHHHTTT
T ss_pred             HHHcCCHHHHHHHHhcC
Confidence            66666666666666553

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.94  E-value=2.2e-25  Score=137.94  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=62.7

Q ss_pred             CcchHHHHHHH--------hh-----hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            2 GNTAFHESLFI--------IN-----RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         2 g~~~lh~a~~~--------l~-----~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      |.||||+|+..        +.     .+.+++.+|..|.||||+|+..++.+++++|++.|.++. ..+..|.||||+|+
T Consensus         9 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~l~~A~   87 (241)
T 1k1a_A            9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPM-ALDRHGQTAAHLAC   87 (241)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccCCCCCCHHHHHH
Confidence            55666666555        21     345555556666666666666666666666666555553 44555555555555


Q ss_pred             hcCchHHHHHHHhccC----CCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           69 KNGHVKVMVEMLKKQH----CPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        69 ~~~~~~~~~~l~~~~~----~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ..++.+++++|++.+.    +++..+..|.||||+|+..|+.+++++|++.
T Consensus        88 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  138 (241)
T 1k1a_A           88 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER  138 (241)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            5555555555555544    4444555555555555555555555555554

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.93  E-value=9.2e-26  Score=141.32  Aligned_cols=117  Identities=15%  Similarity=0.175  Sum_probs=101.5

Q ss_pred             CCcchHHHHH---HH---------hhhc-----------CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc
Q 044402            1 MGNTAFHESL---FI---------INRV-----------TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN   57 (127)
Q Consensus         1 ~g~~~lh~a~---~~---------l~~~-----------~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   57 (127)
                      .|.||||+|+   +.         +..+           .+++..|..|.||||+|+..|+.+++++|++.|+++. ..+
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~  123 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVH-AQA  123 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTT-CCC
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcC-ccc
Confidence            3899999999   22         3333           2344566799999999999999999999999999986 555


Q ss_pred             --------------ccCCChhhhhhhcCchHHHHHHHh---ccCCCCcccCCCCcHHHHHHhcCc---------HHHHHH
Q 044402           58 --------------IKTLYPIHLACKNGHVKVMVEMLK---KQHCPMFVTNSGYNILHFVVKNGH---------VNMVKA  111 (127)
Q Consensus        58 --------------~~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~  111 (127)
                                    ..|+||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..++         .+++++
T Consensus       124 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~  203 (260)
T 3jxi_A          124 RGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDL  203 (260)
T ss_dssp             EECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHH
T ss_pred             cccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHH
Confidence                          579999999999999999999999   999999999999999999998877         799999


Q ss_pred             HHHh-ccc
Q 044402          112 IIKI-SET  118 (127)
Q Consensus       112 Ll~~-~~~  118 (127)
                      |+++ .++
T Consensus       204 Ll~~ga~~  211 (260)
T 3jxi_A          204 LLIKCAKL  211 (260)
T ss_dssp             HHHHHHHH
T ss_pred             HHHhCccc
Confidence            9988 544

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=6.2e-25  Score=138.49  Aligned_cols=118  Identities=15%  Similarity=0.112  Sum_probs=108.9

Q ss_pred             CcchHHHHHHH---------hhh-cCCCCccccCCchhHHHHHhcCC----HHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            2 GNTAFHESLFI---------INR-VTKWKTKDWNENIPLYFATSNTY----IRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~-~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      |.||||.|+..         +.. +.+++.+|..|.||||+|+..++    .+++++|++.|.++. ..+..|.||||+|
T Consensus       148 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~-~~~~~g~t~L~~A  226 (285)
T 1wdy_A          148 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILA  226 (285)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCC-CcCCCCCcHHHHH
Confidence            78999999998         334 88999999999999999999999    999999999999986 7888999999999


Q ss_pred             hhcCchHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           68 CKNGHVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        68 ~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +..|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++ .+++.
T Consensus       227 ~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          227 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             HHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCC
T ss_pred             HHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCc
Confidence            99999999999999 8999999999999999999999999999999999 44443

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.93  E-value=2e-25  Score=127.90  Aligned_cols=103  Identities=24%  Similarity=0.301  Sum_probs=93.9

Q ss_pred             cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCc
Q 044402           16 VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYN   95 (127)
Q Consensus        16 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t   95 (127)
                      |+++ .+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..++.+++++|++.|++++.++..|.|
T Consensus         1 G~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t   78 (137)
T 3c5r_A            1 GIDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-VKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDS   78 (137)
T ss_dssp             ---C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCC
T ss_pred             CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCC
Confidence            4566 789999999999999999999999999999886 78889999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           96 ILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        96 ~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |||+|+..|+.+++++|++. .+++.
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~~ga~~~~  104 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLSYGASRNA  104 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999998 55443

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.93  E-value=2.3e-25  Score=127.62  Aligned_cols=104  Identities=14%  Similarity=0.117  Sum_probs=96.7

Q ss_pred             cCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCC-CC
Q 044402           16 VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS-GY   94 (127)
Q Consensus        16 ~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~~   94 (127)
                      +.+++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+. ++.+++++|++.|++++.++.. |.
T Consensus         2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~   79 (136)
T 1d9s_A            2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPN-ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLT   79 (136)
T ss_dssp             CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTB
T ss_pred             CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCC
Confidence            46788999999999999999999999999999999886 788899999999999 9999999999999999999999 99


Q ss_pred             cHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           95 NILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        95 t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ||||+|+..|+.+++++|+++ .+++..
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~  107 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHRAGARLDVC  107 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTCCCCCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCcc
Confidence            999999999999999999998 554443

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.93  E-value=6.5e-26  Score=144.08  Aligned_cols=112  Identities=16%  Similarity=0.163  Sum_probs=75.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccC-CChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKT-LYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~t~l~~a~~~~   71 (127)
                      |.||||+|+..         +..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..| .||||+|+..|
T Consensus        62 g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~~t~L~~A~~~~  140 (285)
T 3kea_A           62 NEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-FYGKTGWKTSFYHAVMLN  140 (285)
T ss_dssp             TCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGG-GCSSSGGGSHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC-ccCCCCCCCHHHHHHHcC
Confidence            66777777765         45567777777777777777777777777777777777664 555556 57777777777


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +.+++++|++.|++.... ..|.||||+|+..|+.+++++|+++
T Consensus       141 ~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~  183 (285)
T 3kea_A          141 DVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDY  183 (285)
T ss_dssp             CHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHc
Confidence            777777777666554211 2566666666666666666666665

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=4.7e-26  Score=147.18  Aligned_cols=120  Identities=17%  Similarity=0.084  Sum_probs=102.7

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCC---HHHHHHHHHhc-CCCcccccccCCChhhhh
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTY---IRGVCFLLELN-GHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~---~~~~~~ll~~~-~~~~~~~~~~~~t~l~~a   67 (127)
                      .|.||||+|+..         +..|++++.+|..|+||||+|+..++   .++++.|++.+ +++ ...+..|+||||+|
T Consensus       130 ~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~-~~~d~~g~tpLh~A  208 (327)
T 1sw6_A          130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCL-ILEDSMNRTILHHI  208 (327)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGG-GEECTTCCCHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccc-cCCCCCCCCHHHHH
Confidence            488999999987         66789999999999999999999998   67778888876 445 47888999999999


Q ss_pred             hh----cCchHHHHHHHhccC---------------------------------------------CCCcccCCCCcHHH
Q 044402           68 CK----NGHVKVMVEMLKKQH---------------------------------------------CPMFVTNSGYNILH   98 (127)
Q Consensus        68 ~~----~~~~~~~~~l~~~~~---------------------------------------------~~~~~~~~~~t~l~   98 (127)
                      +.    .|+.+++++|++.+.                                             +++.+|..|+||||
T Consensus       209 ~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh  288 (327)
T 1sw6_A          209 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLN  288 (327)
T ss_dssp             HHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHH
T ss_pred             HHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHH
Confidence            98    899999999988743                                             57788899999999


Q ss_pred             HHHhcCcHHHHHHHHHh-cccccc
Q 044402           99 FVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +|+..|+.+++++|+++ .+++..
T Consensus       289 ~A~~~g~~~~v~~Ll~~Gad~~~~  312 (327)
T 1sw6_A          289 IAARLGNISIVDALLDYGADPFIA  312 (327)
T ss_dssp             HHHHHCCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccc
Confidence            99999999999999998 555444

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.93  E-value=3.8e-25  Score=140.24  Aligned_cols=113  Identities=14%  Similarity=0.165  Sum_probs=101.8

Q ss_pred             chHHHHHHH---------hhhcCC------CCccccCCchhHHHHHhc---CCHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            4 TAFHESLFI---------INRVTK------WKTKDWNENIPLYFATSN---TYIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~------~~~~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      ++|+.|+..         +..+.+      ++..|..|.||||+|+..   ++.+++++|++.|++++ .++..|+||||
T Consensus       132 ~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in-~~d~~g~TpLh  210 (278)
T 1dcq_A          132 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHH
T ss_pred             hhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc-ccCCCCCCHHH
Confidence            467777766         455666      444588999999999999   89999999999999986 78999999999


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhcc
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISE  117 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~  117 (127)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++++.
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga  262 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALS  262 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence            9999999999999999999999999999999999999999999999999843

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.93  E-value=1.9e-25  Score=140.85  Aligned_cols=118  Identities=15%  Similarity=0.201  Sum_probs=102.1

Q ss_pred             CCcchHHHHHH----H--------hhhcCC-------CC----ccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc
Q 044402            1 MGNTAFHESLF----I--------INRVTK-------WK----TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN   57 (127)
Q Consensus         1 ~g~~~lh~a~~----~--------l~~~~~-------~~----~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   57 (127)
                      .|.||||+|+.    .        +..+++       ++    .+|..|.||||+|+..++.+++++|++.|+++. ..+
T Consensus        53 ~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~-~~~  131 (273)
T 2pnn_A           53 TGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQ-AAA  131 (273)
T ss_dssp             TCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCB
T ss_pred             CCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-ccc
Confidence            48899999995    2        344433       22    266789999999999999999999999999986 555


Q ss_pred             c--------------cCCChhhhhhhcCchHHHHHHHh---ccCCCCcccCCCCcHHHHHHhcCc---------HHHHHH
Q 044402           58 I--------------KTLYPIHLACKNGHVKVMVEMLK---KQHCPMFVTNSGYNILHFVVKNGH---------VNMVKA  111 (127)
Q Consensus        58 ~--------------~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~  111 (127)
                      .              .|.||||+|+..|+.+++++|++   .|++++.+|..|+||||+|+..|+         .+++++
T Consensus       132 ~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~  211 (273)
T 2pnn_A          132 NGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE  211 (273)
T ss_dssp             CSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred             cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHH
Confidence            4              79999999999999999999999   999999999999999999999887         799999


Q ss_pred             HHHh-cccc
Q 044402          112 IIKI-SETN  119 (127)
Q Consensus       112 Ll~~-~~~~  119 (127)
                      |+++ .+++
T Consensus       212 Ll~~ga~~n  220 (273)
T 2pnn_A          212 ILILGAKLH  220 (273)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHhhhhcc
Confidence            9988 5554

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=5.3e-25  Score=142.40  Aligned_cols=59  Identities=22%  Similarity=0.319  Sum_probs=35.5

Q ss_pred             cccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           57 NIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        57 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       244 ~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  302 (351)
T 3utm_A          244 NKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSY  302 (351)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            34455566666666666666666666666666666666666666666666666666655

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.93  E-value=4.5e-25  Score=142.75  Aligned_cols=117  Identities=20%  Similarity=0.268  Sum_probs=107.3

Q ss_pred             CcchHHHHHHH--------hh--hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI--------IN--RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~--------l~--~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.++||.|+..        ++  .+.+++.+|..|.||||+|+..|+.+++++|++.|.++. ..+..|+||||+|+..|
T Consensus        24 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g  102 (351)
T 3utm_A           24 KKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-AKDKGGLVPLHNACSYG  102 (351)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTT
T ss_pred             cchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCcHHHHHHHCC
Confidence            56899999998        22  357788899999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ .+++
T Consensus       103 ~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~  151 (351)
T 3utm_A          103 HYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT  151 (351)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc
Confidence            99999999999999999999999999999999999999999998 4443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.93  E-value=1.7e-25  Score=146.06  Aligned_cols=99  Identities=12%  Similarity=0.214  Sum_probs=92.4

Q ss_pred             cccCCchhHHHHHhcC--CHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCC-----CCcccCCCC
Q 044402           22 KDWNENIPLYFATSNT--YIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHC-----PMFVTNSGY   94 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~~~   94 (127)
                      +|..|.||||+|+..+  +.+++++|++.|+++. ..+..|.||||+|+..|+.+++++|++.|++     ++..+..|+
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~  212 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGN  212 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCC
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCC
Confidence            8889999999999999  9999999999999986 7888999999999999999999999999998     899999999


Q ss_pred             cHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           95 NILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        95 t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ||||+|+..|+.+++++|+++ .+++..
T Consensus       213 t~L~~A~~~g~~~~v~~Ll~~gad~~~~  240 (364)
T 3ljn_A          213 SHLHWAILINWEDVAMRFVEMGIDVNME  240 (364)
T ss_dssp             CTTHHHHTTTCHHHHHHHHTTTCCTTCC
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCCCCCCC
Confidence            999999999999999999998 555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.93  E-value=4.8e-25  Score=144.64  Aligned_cols=114  Identities=17%  Similarity=0.221  Sum_probs=103.9

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCc--------cccCCchhHHHHHhcCCHHHHHHHHHhc-CCCccccccc
Q 044402            1 MGNTAFHESLFI------------INRVTKWKT--------KDWNENIPLYFATSNTYIRGVCFLLELN-GHSAIEHNIK   59 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~--------~d~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~   59 (127)
                      .|.||||+|+..            +..+++++.        +|..|.||||+|+..++.+++++|++.+ .++. ..+..
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n-~~d~~  312 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD-KQDED  312 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT-CCCTT
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc-CcCCC
Confidence            478999999862            556777775        6778999999999999999999999987 7765 78899


Q ss_pred             CCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           60 TLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        60 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |+||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus       313 g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~  368 (373)
T 2fo1_E          313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  368 (373)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999987

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.93  E-value=5.4e-25  Score=138.75  Aligned_cols=118  Identities=18%  Similarity=0.119  Sum_probs=108.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCcc-ccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTK-DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~-d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      |.||||.|+..         +..+.+++.. +..|.||||+|+..++.+++++|++.|.++. ..+..|.||||+|+..|
T Consensus         5 g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~   83 (285)
T 1wdy_A            5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-LRKKNGATPFLLAAIAG   83 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHHT
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcC
Confidence            68999999998         5667888887 7889999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. .+++.
T Consensus        84 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  133 (285)
T 1wdy_A           84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNL  133 (285)
T ss_dssp             CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCccc
Confidence            99999999999999999999999999999999999999999998 54443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=134.40  Aligned_cols=119  Identities=17%  Similarity=0.242  Sum_probs=107.5

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+.+++.++..|.||||+|+..++.+++++|++.+.+.....+..+.|||++|+..|
T Consensus         8 ~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~   87 (240)
T 3eu9_A            8 YSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQG   87 (240)
T ss_dssp             GGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcC
Confidence            367999999988         56788999999999999999999999999999999999886555566999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      +.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++ .+++
T Consensus        88 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~  136 (240)
T 3eu9_A           88 HLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD  136 (240)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc
Confidence            99999999999999999999999999999999999999999988 4443

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.92  E-value=3.1e-25  Score=141.22  Aligned_cols=113  Identities=13%  Similarity=0.140  Sum_probs=106.5

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+++++..|..|.||||+|+..|+.+++++|++.|+++. ..+..|+||||+|+..|+
T Consensus        40 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~tpL~~A~~~g~  118 (299)
T 1s70_B           40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANIN-QPDNEGWIPLHAAASCGY  118 (299)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTC
T ss_pred             CccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CCCCCCCcHHHHHHHcCC
Confidence            56899999988         66789999999999999999999999999999999999986 788899999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|++.|++++..+..|.||||+|+..+..++++.++..
T Consensus       119 ~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~  161 (299)
T 1s70_B          119 LDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNR  161 (299)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhh
Confidence            9999999999999999999999999999999999999998876

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=1.1e-24  Score=139.53  Aligned_cols=112  Identities=14%  Similarity=0.139  Sum_probs=103.9

Q ss_pred             chHHHHHHH---------hhhcCCCCc------cccCCchhHHHHHhc---CCHHHHHHHHHhcCCCcccccccCCChhh
Q 044402            4 TAFHESLFI---------INRVTKWKT------KDWNENIPLYFATSN---TYIRGVCFLLELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~------~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~   65 (127)
                      ++|+.|+..         +..+.+++.      .+..|.||||+|+..   ++.+++++|+++|++++ ..+..|+||||
T Consensus       153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn-~~d~~G~TpLh  231 (301)
T 2b0o_E          153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLD-AKAADGNTALH  231 (301)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTT-CCCTTCCCHHH
T ss_pred             HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCC-CCCCCCCCHHH
Confidence            469999877         566788887      689999999999997   89999999999999986 78899999999


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      +|+..|+.+++++|++.|++++.+|..|.|||++|+..++.+++++|++++
T Consensus       232 ~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~g  282 (301)
T 2b0o_E          232 YAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  282 (301)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999883

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=4.8e-25  Score=144.38  Aligned_cols=113  Identities=15%  Similarity=0.137  Sum_probs=105.5

Q ss_pred             cchHHHHHHH----------hhhcCCCCccc--cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhc
Q 044402            3 NTAFHESLFI----------INRVTKWKTKD--WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN   70 (127)
Q Consensus         3 ~~~lh~a~~~----------l~~~~~~~~~d--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~   70 (127)
                      .|+||.|+..          +..|++++..+  ..|.||||+|+..++.+++++|+++|++++ ..+..|+||||+|+..
T Consensus       200 ~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn-~~d~~G~TpLh~A~~~  278 (368)
T 3jue_A          200 GALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN-QADSAGRGPLHHATIL  278 (368)
T ss_dssp             HHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHH
T ss_pred             CcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHc
Confidence            3689988764          66789999988  899999999999999999999999999996 7899999999999999


Q ss_pred             CchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           71 GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        71 ~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      |+.+++++|++.|++++.+|..|.||||+|+..++.+++++|++.+
T Consensus       279 g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~  324 (368)
T 3jue_A          279 GHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAK  324 (368)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999999763

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.92  E-value=6.5e-25  Score=144.02  Aligned_cols=119  Identities=21%  Similarity=0.214  Sum_probs=109.4

Q ss_pred             CCcchHHHHHHH--------h---------hhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCCh
Q 044402            1 MGNTAFHESLFI--------I---------NRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYP   63 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l---------~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~   63 (127)
                      .|+||||+|+..        +         ..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.||
T Consensus       124 ~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~-~~~~~g~t~  202 (373)
T 2fo1_E          124 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPT-IYNKSERSA  202 (373)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC-CCCTTCCCH
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCc-ccCCCCCCH
Confidence            488999999987        2         4688999999999999999999999999999999999986 788899999


Q ss_pred             hhhhhhcCchHHHHHHHhcc---CCCCcccCCCCcHHHHHHhcC---cHHHHHHHHHh-ccccc
Q 044402           64 IHLACKNGHVKVMVEMLKKQ---HCPMFVTNSGYNILHFVVKNG---HVNMVKAIIKI-SETNI  120 (127)
Q Consensus        64 l~~a~~~~~~~~~~~l~~~~---~~~~~~~~~~~t~l~~a~~~~---~~~~~~~Ll~~-~~~~~  120 (127)
                      ||+|+..|+.+++++|++.+   ++++..+..|.||||+|+..+   +.+++++|++. .+++.
T Consensus       203 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~  266 (373)
T 2fo1_E          203 LHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY  266 (373)
T ss_dssp             HHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC
T ss_pred             HHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCccc
Confidence            99999999999999999988   789999999999999999998   89999999998 55543

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.92  E-value=6.1e-25  Score=122.42  Aligned_cols=101  Identities=27%  Similarity=0.270  Sum_probs=94.0

Q ss_pred             ccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHH
Q 044402           21 TKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFV  100 (127)
Q Consensus        21 ~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a  100 (127)
                      .+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..++.+++++|++.|++++.++..|.|||++|
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~A   82 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLA   82 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHH
Confidence            578999999999999999999999999999886 7888999999999999999999999999999999999999999999


Q ss_pred             HhcCcHHHHHHHHHh-ccccccc
Q 044402          101 VKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus       101 ~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      +..++.+++++|+++ .+++...
T Consensus        83 ~~~~~~~~~~~Ll~~ga~~n~~~  105 (115)
T 2l6b_A           83 KKNGHHEIVKLLDAKGADVNARS  105 (115)
T ss_dssp             HTTTCHHHHHHHHTTSSSHHHHS
T ss_pred             HHCCCHHHHHHHHHcCCCCCcCC
Confidence            999999999999998 6555543

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.92  E-value=8.2e-24  Score=136.85  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=70.4

Q ss_pred             CcchHHHHHHH--------hh--hcCCCCccccCCchhHHHHHhcCC----HHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            2 GNTAFHESLFI--------IN--RVTKWKTKDWNENIPLYFATSNTY----IRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~--------l~--~~~~~~~~d~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      |.||||+|+..        |+  .|++++.+|..|.|++++++..+.    ..++++|++.|+++. .++..|+||||+|
T Consensus       168 g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n-~~d~~g~t~L~~a  246 (337)
T 4g8k_A          168 GATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLILA  246 (337)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTT-CCCGGGCCHHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCC-CcCCCCCCHHHHH
Confidence            66778777776        22  256666666666666666544332    235566666666664 5566666666666


Q ss_pred             hhcCchHHHHHHHhc-cCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           68 CKNGHVKVMVEMLKK-QHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +..|+.+++++|+.. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       247 ~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  295 (337)
T 4g8k_A          247 VEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR  295 (337)
T ss_dssp             HHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            666666666666653 566666666666666666666666666666665

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.91  E-value=6.4e-24  Score=119.59  Aligned_cols=99  Identities=16%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      .+..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..++.+++++|++.|++++.+|..|+||||+|+
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHH
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            35678899999999999999999999999886 78889999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHh-cccccc
Q 044402          102 KNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus       102 ~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ..++.+++++|+++ .+++..
T Consensus        82 ~~~~~~~v~~Ll~~ga~~~~~  102 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGADKTVK  102 (123)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCC
T ss_pred             HcCCHHHHHHHHHcCCCCCCc
Confidence            99999999999998 554443

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.91  E-value=1.2e-23  Score=129.85  Aligned_cols=113  Identities=13%  Similarity=0.091  Sum_probs=66.9

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         +..+++++.++..|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..++
T Consensus        76 ~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~-~~~~~g~t~l~~a~~~~~  154 (240)
T 3eu9_A           76 NSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-MMDQNGMTPLMWAAYRTH  154 (240)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHCC
T ss_pred             CCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc-ccCCCCCcHHHHHHHhCC
Confidence            56777777776         44566777777777777777777777777777777776553 344445555555543333


Q ss_pred             -hHHHHHHHhccCCCCcccC-CCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 -VKVMVEMLKKQHCPMFVTN-SGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 -~~~~~~l~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                       .+++++|++.|++++..+. .|.||||+|+..|+.+++++|+++
T Consensus       155 ~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  199 (240)
T 3eu9_A          155 SVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA  199 (240)
T ss_dssp             SSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             hHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc
Confidence             4444444444444444443 455555555555555555555544

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.91  E-value=1.1e-23  Score=136.29  Aligned_cols=115  Identities=16%  Similarity=0.158  Sum_probs=100.3

Q ss_pred             CCcchHHHHHHH-------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhh
Q 044402            1 MGNTAFHESLFI-------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHL   66 (127)
Q Consensus         1 ~g~~~lh~a~~~-------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~   66 (127)
                      .|.|++|.++..             +..|++++.+|..|.||||+|+..++.+++++|++. +.++. .++..|+||||+
T Consensus       201 ~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~  279 (337)
T 4g8k_A          201 MGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLL  279 (337)
T ss_dssp             TSCCHHHHHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHHH
T ss_pred             CCCcHHHHHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHHH
Confidence            378999887654             457899999999999999999999999999999985 66665 788999999999


Q ss_pred             hhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           67 ACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        67 a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      |+..|+.+++++|++.|++++.+     +||++|+..|+.+++++|+++ .+++..
T Consensus       280 A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          280 AVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             HHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence            99999999999999999988654     599999999999999999999 566553

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.91  E-value=8.4e-24  Score=113.78  Aligned_cols=84  Identities=27%  Similarity=0.353  Sum_probs=77.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|+||||+|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. .++..|+||||+|+..|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcC
Confidence            589999999988         56789999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHHHhccCC
Q 044402           72 HVKVMVEMLKKQHC   85 (127)
Q Consensus        72 ~~~~~~~l~~~~~~   85 (127)
                      +.+++++|++.|++
T Consensus        80 ~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           80 HLEVVKLLLEAGAY   93 (93)
T ss_dssp             CHHHHHHHHHTTCC
T ss_pred             CHHHHHHHHHcCCC
Confidence            99999999998864

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.91  E-value=1e-24  Score=131.00  Aligned_cols=118  Identities=10%  Similarity=0.035  Sum_probs=99.7

Q ss_pred             CcchHHHHHHH--------hhhcCCCCccc-cCCchhHHHHHhcCCH----HHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            2 GNTAFHESLFI--------INRVTKWKTKD-WNENIPLYFATSNTYI----RGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         2 g~~~lh~a~~~--------l~~~~~~~~~d-~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      +.++|+.|++.        +.+ .+++..+ ..|+||||+|+..++.    +++++|++.|+++. .++..|+||||+|+
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~-~~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn-~~d~~g~TpLh~a~   83 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFE-KGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIK-SRTKEGTTLFFPLF   83 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHH-HSSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSS-CCCTTCCCTHHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHh-cCcccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCC-CCCCCCCcHHHHHH
Confidence            56889999988        222 3455666 7899999999999975    58999999999996 78899999999999


Q ss_pred             hcCc------hHHHHHHHhccCCCCcccCCCC-cHHHHHHhcC-----cHHHHHHHHH-h-cccccc
Q 044402           69 KNGH------VKVMVEMLKKQHCPMFVTNSGY-NILHFVVKNG-----HVNMVKAIIK-I-SETNIS  121 (127)
Q Consensus        69 ~~~~------~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~-----~~~~~~~Ll~-~-~~~~~~  121 (127)
                      ..++      .+++++|++.|++++.+|..|+ ||||+|+..+     ..+++++|++ + .+++..
T Consensus        84 ~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~  150 (186)
T 3t8k_A           84 QGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIK  150 (186)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCC
T ss_pred             HcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCccc
Confidence            9887      5789999999999999999999 9999999944     4679999998 6 555443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.90  E-value=1.8e-23  Score=115.84  Aligned_cols=92  Identities=18%  Similarity=0.216  Sum_probs=84.8

Q ss_pred             CccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHH
Q 044402           20 KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHF   99 (127)
Q Consensus        20 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~   99 (127)
                      .-.|..|.||||+|+..++.+++++|++.++++. ..+..|+||||+|+..|+.+++++|++.|++++.++..|.||||+
T Consensus        18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~   96 (110)
T 2zgd_A           18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVA-AKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDI   96 (110)
T ss_dssp             ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHH
Confidence            3467889999999999999999999999999886 788899999999999999999999999999999999999999999


Q ss_pred             HHhcCcHHHHHHH
Q 044402          100 VVKNGHVNMVKAI  112 (127)
Q Consensus       100 a~~~~~~~~~~~L  112 (127)
                      |+..|+.+++++|
T Consensus        97 A~~~~~~~~~~~L  109 (110)
T 2zgd_A           97 SIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHTCHHHHHHH
T ss_pred             HHHcCCHHHHHHh
Confidence            9999999999887

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.90  E-value=3.9e-23  Score=127.72  Aligned_cols=109  Identities=10%  Similarity=0.058  Sum_probs=94.1

Q ss_pred             hhhcCCCCc---cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcc
Q 044402           13 INRVTKWKT---KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFV   89 (127)
Q Consensus        13 l~~~~~~~~---~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~   89 (127)
                      +.++.+++.   .+..+.||||+|+..|+.+++++|++.|+++. ..+..|+||||+|+..|+.+++++|++.|++++.+
T Consensus         5 l~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n~~   83 (229)
T 2vge_A            5 LRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPS-QPNEEGITALHNAICGANYSIVDFLITAGANVNSP   83 (229)
T ss_dssp             -----CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             hccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            345666554   44567788999999999999999999999886 78899999999999999999999999999999999


Q ss_pred             cCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           90 TNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        90 ~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      |..|+||||+|+..|+.+++++|++. .+++...
T Consensus        84 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~  117 (229)
T 2vge_A           84 DSHGWTPLHCAASCNDTVICMALVQHGAAIFATT  117 (229)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccc
Confidence            99999999999999999999999998 5655543

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.90  E-value=2.9e-23  Score=118.78  Aligned_cols=98  Identities=20%  Similarity=0.256  Sum_probs=89.8

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      ....+.||||+|+..|+.+++++|++.+.++. ..+..|+||||+|+..++.+++++|++.|++++.++..|.||||+|+
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~   88 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA   88 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence            45668899999999999999999999999986 78889999999999999999999999999999999999999999999


Q ss_pred             hcCcHHHHHHHHHh-ccccc
Q 044402          102 KNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus       102 ~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      ..|+.+++++|+++ .+++.
T Consensus        89 ~~~~~~~v~~Ll~~g~~~~~  108 (136)
T 2jab_A           89 FIGHLEIAEVLLKHGADVNA  108 (136)
T ss_dssp             HHTCHHHHHHHHHTTCCTTC
T ss_pred             HcCCHHHHHHHHHcCCCCcC
Confidence            99999999999998 45443

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=1.2e-23  Score=117.11  Aligned_cols=96  Identities=22%  Similarity=0.170  Sum_probs=87.5

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+.+++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|+|||++|+..+
T Consensus         8 ~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~d~~g~tpl~~A~~~~   86 (115)
T 2l6b_A            8 DGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVN-ARSKDGNTPEHLAKKNG   86 (115)
T ss_dssp             SSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTT-CCCTTCCCTTHHHHTTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHCC
Confidence            489999999988         55678999999999999999999999999999999999986 78889999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNIL   97 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l   97 (127)
                      +.+++++|++.|++++.++..+.+|-
T Consensus        87 ~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           87 HHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             CHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             CHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999998874

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.89  E-value=8.1e-23  Score=119.40  Aligned_cols=100  Identities=15%  Similarity=0.127  Sum_probs=89.2

Q ss_pred             CccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCc-HHH
Q 044402           20 KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYN-ILH   98 (127)
Q Consensus        20 ~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t-~l~   98 (127)
                      +..+..|.||||+|+..|+.+++++|++.|.++. ..+..|+||||+|+ .|+.+++++|++.|++++.++..|.| |||
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~   83 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVH   83 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHH
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHH
Confidence            4567889999999999999999999999999886 78889999999986 99999999999999999999999999 999


Q ss_pred             HHHhcCcHHHHHHHHHh-cccccc
Q 044402           99 FVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +|+..|+.+++++|+++ .+++..
T Consensus        84 ~A~~~~~~~~v~~Ll~~ga~~~~~  107 (156)
T 1bi7_B           84 DAAREGFLDTLVVLHRAGARLDVR  107 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSSCC
T ss_pred             HHHHCCCHHHHHHHHHcCCCCccc
Confidence            99999999999999998 554443

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.89  E-value=2.1e-22  Score=113.30  Aligned_cols=95  Identities=28%  Similarity=0.441  Sum_probs=88.7

Q ss_pred             CCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcC
Q 044402           25 NENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNG  104 (127)
Q Consensus        25 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~  104 (127)
                      +|.||||+|+..++.+++++|++.+.++. ..+..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..+
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            48999999999999999999999999885 67889999999999999999999999999999999999999999999999


Q ss_pred             cHHHHHHHHHh-ccccc
Q 044402          105 HVNMVKAIIKI-SETNI  120 (127)
Q Consensus       105 ~~~~~~~Ll~~-~~~~~  120 (127)
                      +.+++++|+++ .+++.
T Consensus        80 ~~~~~~~Ll~~g~~~~~   96 (126)
T 1n0r_A           80 HLEVVKLLLEAGADVNA   96 (126)
T ss_dssp             CHHHHHHHHHTTCCTTC
T ss_pred             hHHHHHHHHHcCCCCcc
Confidence            99999999998 44443

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.89  E-value=8.2e-23  Score=125.43  Aligned_cols=99  Identities=14%  Similarity=0.126  Sum_probs=91.6

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhc-cCCCCcccCCCCcHHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKK-QHCPMFVTNSGYNILHFV  100 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~t~l~~a  100 (127)
                      .+..|.||||+|+..|+.+++++|++.+.++. ..+..|+||||+|+..|+.+++++|++. |++++.++..|+||||+|
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            45678999999999999999999999999886 7888999999999999999999999999 999999999999999999


Q ss_pred             HhcCcHHHHHHHHHh-cccccc
Q 044402          101 VKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus       101 ~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +..|+.+++++|+++ .+++..
T Consensus       148 ~~~~~~~~v~~Ll~~ga~~~~~  169 (222)
T 3ehr_A          148 AWKGYADIVQLLLAKGARTDLR  169 (222)
T ss_dssp             HHHTCHHHHHHHHHHTCCSCCC
T ss_pred             HHcCCHHHHHHHHHcCCCCccc
Confidence            999999999999998 555443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.89  E-value=8e-23  Score=122.29  Aligned_cols=98  Identities=12%  Similarity=0.125  Sum_probs=89.7

Q ss_pred             cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCccc-CCCCcHHHHH
Q 044402           22 KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT-NSGYNILHFV  100 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a  100 (127)
                      .+..|.||||+|+..|+.+++++|++ +.++. ..+..|+||||+|+..|+.+++++|++.|++++.++ ..|+||||+|
T Consensus        40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A  117 (183)
T 3deo_A           40 VVSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  117 (183)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            35688999999999999999999999 88775 788999999999999999999999999999999888 8999999999


Q ss_pred             HhcCcHHHHHHHHHh-cccccc
Q 044402          101 VKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus       101 ~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +..|+.+++++|+++ .+++..
T Consensus       118 ~~~~~~~~v~~Ll~~ga~~~~~  139 (183)
T 3deo_A          118 AGYVRPEVVEALVELGADIEVE  139 (183)
T ss_dssp             HHTTCHHHHHHHHHHTCCTTCC
T ss_pred             HhcCcHHHHHHHHHcCCCCcCC
Confidence            999999999999998 555433

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.88  E-value=1.4e-22  Score=130.93  Aligned_cols=102  Identities=19%  Similarity=0.155  Sum_probs=93.9

Q ss_pred             hhhcCCCCc-cccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc---hHHHHHHHhcc-CCCC
Q 044402           13 INRVTKWKT-KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH---VKVMVEMLKKQ-HCPM   87 (127)
Q Consensus        13 l~~~~~~~~-~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~---~~~~~~l~~~~-~~~~   87 (127)
                      +..+++++. +|..|.||||+|+..|+.+++++|++.|+++. ..+..|+||||+|+..|+   .++++.|++.+ .+++
T Consensus       117 ~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n-~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~  195 (327)
T 1sw6_A          117 PNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRL-YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI  195 (327)
T ss_dssp             TTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-BCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGG
T ss_pred             HhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcccc
Confidence            456789999 89999999999999999999999999999996 789999999999999999   78888888876 6789


Q ss_pred             cccCCCCcHHHHHHh----cCcHHHHHHHHHh
Q 044402           88 FVTNSGYNILHFVVK----NGHVNMVKAIIKI  115 (127)
Q Consensus        88 ~~~~~~~t~l~~a~~----~~~~~~~~~Ll~~  115 (127)
                      .++..|+||||+|+.    .|+.+++++|++.
T Consensus       196 ~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             EECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            999999999999999    8999999999977

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.88  E-value=4.4e-24  Score=140.19  Aligned_cols=114  Identities=15%  Similarity=0.180  Sum_probs=92.9

Q ss_pred             CcchHHHHHHH---------hhhcCCC---CccccCCchhHHHHHhcCCHHHHHHHHHhcCCCc--ccccccCCChhhhh
Q 044402            2 GNTAFHESLFI---------INRVTKW---KTKDWNENIPLYFATSNTYIRGVCFLLELNGHSA--IEHNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~---~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~--~~~~~~~~t~l~~a   67 (127)
                      +.||||.|+..         +..+.+.   +..+..|.||||+|+.+|+.+++++|++.|++..  ...... +||||+|
T Consensus        92 ~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~A  170 (376)
T 2aja_A           92 SEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLA  170 (376)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHH
T ss_pred             cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHH
Confidence            46999999998         3344422   2345678899999999999999999999997521  122223 8999999


Q ss_pred             hhcCchHHHHHHHhccCCCCc--ccCCCCcHHHHHH-hcCcHHHHHHHHHhc
Q 044402           68 CKNGHVKVMVEMLKKQHCPMF--VTNSGYNILHFVV-KNGHVNMVKAIIKIS  116 (127)
Q Consensus        68 ~~~~~~~~~~~l~~~~~~~~~--~~~~~~t~l~~a~-~~~~~~~~~~Ll~~~  116 (127)
                      +..|+.+++++|++.|++++.  .+..|.||||+|+ ..|+.+++++|++.+
T Consensus       171 a~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~g  222 (376)
T 2aja_A          171 AENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  222 (376)
T ss_dssp             HHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             HHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCC
Confidence            999999999999999999876  8888999999999 999999999999763

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.87  E-value=2.2e-22  Score=125.32  Aligned_cols=96  Identities=13%  Similarity=0.133  Sum_probs=88.7

Q ss_pred             ccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCccc-CCCCcHHHHHH
Q 044402           23 DWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT-NSGYNILHFVV  101 (127)
Q Consensus        23 d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~t~l~~a~  101 (127)
                      +..|.||||+|+..|+.+++++|++ +.++. ..+..|+||||+|+..|+.+++++|++.|++++.++ ..|.||||+|+
T Consensus        42 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~  119 (244)
T 3ui2_A           42 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA  119 (244)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHH
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            4578999999999999999999999 88875 788999999999999999999999999999999888 88999999999


Q ss_pred             hcCcHHHHHHHHHh-ccccc
Q 044402          102 KNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus       102 ~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      ..|+.+++++|+++ .+++.
T Consensus       120 ~~g~~~~v~~Ll~~ga~~~~  139 (244)
T 3ui2_A          120 GYVRPEVVEALVELGADIEV  139 (244)
T ss_dssp             HTTCHHHHHHHHHTTCCTTC
T ss_pred             HcCCHHHHHHHHHCCCCCCC
Confidence            99999999999998 55543

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.87  E-value=7.8e-23  Score=130.92  Aligned_cols=99  Identities=15%  Similarity=0.006  Sum_probs=84.0

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      .|.||||+|+..            +..|++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|.|||++|+
T Consensus       189 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~G~TpL~~A~  267 (301)
T 2b0o_E          189 PEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVG-TVNEAGETALDIAR  267 (301)
T ss_dssp             CEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCCS-CCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHH
Confidence            378999999962            56789999999999999999999999999999999999996 78999999999999


Q ss_pred             hcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcH
Q 044402           69 KNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHV  106 (127)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  106 (127)
                      ..++.+++++|++.|++      .|.||||+|+..|+.
T Consensus       268 ~~~~~~iv~~Ll~~ga~------~g~tpLh~A~~~g~~  299 (301)
T 2b0o_E          268 KKHHKECEELLEQAQAG------TFAFPLHVDYSWVIS  299 (301)
T ss_dssp             HHTCHHHHHHHHHHHHH------TTSSCCC--------
T ss_pred             HcCCHHHHHHHHHhcCC------CCCChhHHHHhcCCc
Confidence            99999999999998865      589999999988763

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.82  E-value=5.9e-20  Score=116.41  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=79.2

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      .|.||||+|+..            +..|++++.+|..|.||||+|+..|+.+++++|++.|+++. .++..|.||||+|+
T Consensus       168 ~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~  246 (278)
T 1dcq_A          168 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAK  246 (278)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CccCCCCCHHHHHH
Confidence            389999999974            56789999999999999999999999999999999999996 78999999999999


Q ss_pred             hcCchHHHHHHHhccCCC
Q 044402           69 KNGHVKVMVEMLKKQHCP   86 (127)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~   86 (127)
                      ..|+.+++++|++.|++.
T Consensus       247 ~~~~~~~v~~Ll~~ga~~  264 (278)
T 1dcq_A          247 RLKHEHCEELLTQALSGR  264 (278)
T ss_dssp             HTTCHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHcCCCC
Confidence            999999999999998764

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.81  E-value=2e-22  Score=132.33  Aligned_cols=105  Identities=16%  Similarity=0.044  Sum_probs=89.9

Q ss_pred             CcchHHHHHHH---------hhhcCC---CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccc--ccccCCChhhhh
Q 044402            2 GNTAFHESLFI---------INRVTK---WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIE--HNIKTLYPIHLA   67 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~---~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~~~t~l~~a   67 (127)
                      |.||||+|+..         +..+++   .+..+.. .||||+|+..|+.+++++|+++|+++. .  .+..|+||||+|
T Consensus       128 ~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~-~~~~d~~g~TpL~~A  205 (376)
T 2aja_A          128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA-TAMIQAENYYAFRWA  205 (376)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH-HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc-hhccCCCCCCHHHHH
Confidence            56899999988         445544   2333333 899999999999999999999999874 4  677799999999


Q ss_pred             h-hcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           68 C-KNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        68 ~-~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      + ..|+.+++++|++.|+       .+.||+++|+..|+.+++++|+++
T Consensus       206 a~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~  247 (376)
T 2aja_A          206 AVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARH  247 (376)
T ss_dssp             HSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhc
Confidence            9 9999999999999763       389999999999999999999988

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.80  E-value=2.8e-19  Score=117.16  Aligned_cols=99  Identities=13%  Similarity=0.094  Sum_probs=88.7

Q ss_pred             cccCCchhHHHHHhc-CCHHHHHHHHHhcCCCccccc--ccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHH
Q 044402           22 KDWNENIPLYFATSN-TYIRGVCFLLELNGHSAIEHN--IKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILH   98 (127)
Q Consensus        22 ~d~~g~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~   98 (127)
                      .+..+.|+||.|+.. ++.+++++|++.|++++ ..+  ..|.||||+|+..|+.+++++|++.|++++..|..|+||||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh  273 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGADVN-WVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLH  273 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            334566899999999 99999999999999986 566  78999999999999999999999999999999999999999


Q ss_pred             HHHhcCcHHHHHHHHHh-cccccc
Q 044402           99 FVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        99 ~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +|+..|+.+++++|+++ .+++..
T Consensus       274 ~A~~~g~~~~v~~LL~~Gad~~~~  297 (368)
T 3jue_A          274 HATILGHTGLACLFLKRGADLGAR  297 (368)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             HHHHcCcHHHHHHHHHCcCCCCCc
Confidence            99999999999999998 555443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.80  E-value=2.1e-19  Score=99.34  Aligned_cols=78  Identities=18%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||.|+..         +..+++++.+|..|.||||+|+..++.+++++|++.|+++. ..+..|+|||++|+..|
T Consensus        23 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~-~~d~~g~tpl~~A~~~~  101 (110)
T 2zgd_A           23 DLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVX-AQDKFGKTAFDISIDNG  101 (110)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHT
T ss_pred             ccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc-ccccCCCcHHHHHHHcC
Confidence            477999999988         56788999999999999999999999999999999999986 78899999999999999


Q ss_pred             chHHHHHH
Q 044402           72 HVKVMVEM   79 (127)
Q Consensus        72 ~~~~~~~l   79 (127)
                      +.+++++|
T Consensus       102 ~~~~~~~L  109 (110)
T 2zgd_A          102 NEDLAEIL  109 (110)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHh
Confidence            99999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	127
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	8e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	0.001
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	7e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	4e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	0.002
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	4e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	4e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	7e-04
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	0.003

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 44.3 bits (103), Expect = 8e-07
 Identities = 16/109 (14%), Positives = 44/109 (40%)

Query: 6   FHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIH 65
              +    +   +  ++ +     L++A   + +  V +L+   G +  + +     PI 
Sbjct: 167 EKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM 226

Query: 66  LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           LA + G ++V++ ++++      V  + +        N H N+V    +
Sbjct: 227 LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 8/52 (15%), Positives = 19/52 (36%)

Query: 63  PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           PI L  +      + E + ++   +        +LH++  N      + +I 
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIV 54

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 3e-06
 Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMF 88
           PL+ A+   ++  V  LL+  G S    N+K   P+H+A + GH +V   +L+ +     
Sbjct: 3   PLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 61

Query: 89  VTNSGYNILHFVVKNGHVNMVKAIIK 114
                   LH   + GH NMVK +++
Sbjct: 62  KAKDDQTPLHCAARIGHTNMVKLLLE 87

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 7e-05
 Identities = 29/93 (31%), Positives = 45/93 (48%), Gaps = 1/93 (1%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLK 81
             WN   PL+ A     +     LL+  G SA   +++ + P+HLA + GH +++  +L 
Sbjct: 194 PAWNGYTPLHIAAKQNQVEVARSLLQ-YGGSANAESVQGVTPLHLAAQEGHAEMVALLLS 252

Query: 82  KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           KQ        SG   LH V + GHV +   +IK
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIK 285

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 20/96 (20%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 19  WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
               + +   PL+      ++     L++ +G            P+H+A   G++K++  
Sbjct: 257 GNLGNKSGLTPLHLVAQEGHVPVADVLIK-HGVMVDATTRMGYTPLHVASHYGNIKLVKF 315

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +L+ Q      T  GY+ LH   + GH ++V  ++K
Sbjct: 316 LLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 351

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 19/106 (17%), Positives = 39/106 (36%), Gaps = 1/106 (0%)

Query: 19  WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
                     PL+ A     +R    LLE             L P+H+A  + ++ ++  
Sbjct: 125 QACMTKKGFTPLHVAAKYGKVRVAELLLE-RDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 183

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
           +L +   P     +GY  LH   K   V + +++++   +  +   
Sbjct: 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 17/83 (20%), Positives = 36/83 (43%), Gaps = 3/83 (3%)

Query: 38  YIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQHCPMFVTNSGY 94
              G   L++       + N KT     P+H A + GH  ++  +LK    P  V++ G 
Sbjct: 305 SHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGT 364

Query: 95  NILHFVVKNGHVNMVKAIIKISE 117
             L    + G++++   +  +++
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTD 387

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 4e-04
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 1/114 (0%)

Query: 11  FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN 70
            ++ R         N   PL+ A  +  +  V  LL   G S          P+H+A K 
Sbjct: 150 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP-RGGSPHSPAWNGYTPLHIAAKQ 208

Query: 71  GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
             V+V   +L+        +  G   LH   + GH  MV  ++         +K
Sbjct: 209 NQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 262

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 1e-04
 Identities = 15/107 (14%), Positives = 34/107 (31%), Gaps = 13/107 (12%)

Query: 21  TKDWNENIPLYFATSNTYIRGVCFLLELNGHS----------AIEHNIKTLYPIHLACKN 70
           T  + E I ++   +    +    L     H           A +  IK+     +A   
Sbjct: 41  TLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAIT 100

Query: 71  GHVKV--MVEMLKKQHCPM-FVTNSGYNILHFVVKNGHVNMVKAIIK 114
           G       + +L      +  +    Y       +NGH++++  + +
Sbjct: 101 GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE 147

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 6/99 (6%)

Query: 22  KDWNENIPLYFATSNTYIRGVCFLLELNGHSAI--EHNIKTLYPIHLACKNGHVKVMVEM 79
           K     +  + A        +  L  L     I      +      LA +NGH+ V +  
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHV-LNR 144

Query: 80  LKKQHCPM---FVTNSGYNILHFVVKNGHVNMVKAIIKI 115
           L +         +    Y+      +NGH++++  + ++
Sbjct: 145 LCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCEL 183

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 4e-04
 Identities = 20/119 (16%), Positives = 45/119 (37%)

Query: 6   FHESLFIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIH 65
             +S    +  +  K  ++N +  L+ A+ + Y+  V  L+ L      +        +H
Sbjct: 91  LTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALH 150

Query: 66  LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNISMDK 124
           LA    +  ++  +LK       VT  GY+            + + + +++  N+ M  
Sbjct: 151 LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 29  PLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLY---PIHLACKNGHVKVMVEMLKKQHC 85
            L+ A  + +   + FLL          +++       +HLA   G    + ++      
Sbjct: 12  ALHLAVIHQHEPFLDFLLG-FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAG 70

Query: 86  PMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
            +     G+  LH   +         +++
Sbjct: 71  VLVAERGGHTALHLACRVRAHTCACVLLQ 99

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 4e-04
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 1/104 (0%)

Query: 11  FIINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKN 70
            ++ +  +    + N   PL++A S         LLE  G +    +      +H A   
Sbjct: 88  ALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYEATAMHRAAAK 146

Query: 71  GHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           G++K++  +L  +         G   LH       V   K ++ 
Sbjct: 147 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVS 190

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 6e-04
 Identities = 18/100 (18%), Positives = 41/100 (41%), Gaps = 1/100 (1%)

Query: 16  VTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKV 75
           V        N  I    ++ ++ +  +  LL  +G        +   P+ LA +  H+ +
Sbjct: 175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234

Query: 76  MVEMLKKQHCPMFVTNS-GYNILHFVVKNGHVNMVKAIIK 114
           +  +L+++H  +  T+S G   L   V+     + + + K
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.9 bits (81), Expect = 7e-04
 Identities = 11/96 (11%), Positives = 31/96 (32%)

Query: 19  WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVE 78
              +   +            +R     L     + + H       +H+A   G+ +V+  
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKL 217

Query: 79  MLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK 114
           +++ ++        G+  LH     G     + +++
Sbjct: 218 LIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE 253

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (75), Expect = 0.003
 Identities = 11/99 (11%), Positives = 29/99 (29%), Gaps = 1/99 (1%)

Query: 12  IINRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG 71
           +            +   PL  A  N  +  +  LL  +G +           +H A   G
Sbjct: 130 LERGADIDAVDIKSGRSPLIHAVENNSLS-MVQLLLQHGANVNAQMYSGSSALHSASGRG 188

Query: 72  HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVK 110
            + ++  +++               L        +++++
Sbjct: 189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	127
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.93
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.92
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.92
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.92
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.91
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.9
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.89
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.89
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.83
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.78
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.74

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=6.2e-29  Score=139.46  Aligned_cols=111  Identities=13%  Similarity=0.080  Sum_probs=101.5

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCC-ChhhhhhhcC
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTL-YPIHLACKNG   71 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-t~l~~a~~~~   71 (127)
                      +.++||.|+..         +.+|++++.+|..|.||+|+| ..++.+++++|+++|+++. ..+..+. +|||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~~g~t~l~~a-~~g~~~~v~~Ll~~ga~~~-~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPN-CADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSS-CTTCHHHHHHHHTTTCCCC-CCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCcccccccccccccccc-ccccccccccccccccccc-cccccccccccccccccc
Confidence            56899999998         667899999999999999976 4799999999999999986 5666654 6999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      +.+++++|++.|++++.+|..|+||||+|+..|+.+++++|++
T Consensus        81 ~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             cccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999975

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=5.5e-28  Score=150.73  Aligned_cols=113  Identities=20%  Similarity=0.238  Sum_probs=88.0

Q ss_pred             CCcchHHHHHHH-----------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCC-----------
Q 044402            1 MGNTAFHESLFI-----------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHS-----------   52 (127)
Q Consensus         1 ~g~~~lh~a~~~-----------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~-----------   52 (127)
                      +|+||||+||..                 +..|+++|.+|..|.||||+|+..|+.+++++|+++|+++           
T Consensus        32 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l  111 (277)
T d2fo1e1          32 HNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSAL  111 (277)
T ss_dssp             SCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccccccccccccccc
Confidence            489999999988                 3457899999999999999999999999999999987531           


Q ss_pred             --------------------------------------------------------------------------------
Q 044402           53 --------------------------------------------------------------------------------   52 (127)
Q Consensus        53 --------------------------------------------------------------------------------   52 (127)
                                                                                                      
T Consensus       112 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L  191 (277)
T d2fo1e1         112 HQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL  191 (277)
T ss_dssp             HHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTH
T ss_pred             cchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccccccCCCCcc
Confidence                                                                                            


Q ss_pred             ----------------------cccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHH
Q 044402           53 ----------------------AIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVK  110 (127)
Q Consensus        53 ----------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  110 (127)
                                            ...++..|+||||+|+..|+.+++++|++.|++++.+|..|+||||+|+..|+.++++
T Consensus       192 ~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~  271 (277)
T d2fo1e1         192 HYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD  271 (277)
T ss_dssp             HHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHH
T ss_pred             ccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHH
Confidence                                  1134556667777777777777777777777777777777777777777777777777


Q ss_pred             HHH
Q 044402          111 AII  113 (127)
Q Consensus       111 ~Ll  113 (127)
                      +|+
T Consensus       272 lL~  274 (277)
T d2fo1e1         272 IFD  274 (277)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            665

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-27  Score=143.34  Aligned_cols=107  Identities=18%  Similarity=0.229  Sum_probs=95.1

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCC
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNS   92 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~   92 (127)
                      +.++.+++.+|..|.||||+|+..++.+++++|+++|.++. ..+..+.||||+++..++.+++++|...+.+++.+|..
T Consensus        90 l~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~  168 (223)
T d1uoha_          90 LGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTE  168 (223)
T ss_dssp             HHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTT
T ss_pred             hccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCccchhhhhcCCcchhhhhccccceeeeccCC
Confidence            34567888899999999999999999999999999999885 67888999999999999999999999999999999999


Q ss_pred             CCcHHHHHHhcCcHHHHHHHHHh-ccccc
Q 044402           93 GYNILHFVVKNGHVNMVKAIIKI-SETNI  120 (127)
Q Consensus        93 ~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~  120 (127)
                      |+||||+|+..|+.+++++|++. .+++.
T Consensus       169 g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         169 GNTPLHLACDEERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCSCC
T ss_pred             CCceeccccccCcHHHHHHHHHCCCCCCC
Confidence            99999999999999999999988 44443

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=3.4e-27  Score=145.81  Aligned_cols=102  Identities=15%  Similarity=0.129  Sum_probs=94.8

Q ss_pred             CCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcH
Q 044402           17 TKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNI   96 (127)
Q Consensus        17 ~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~   96 (127)
                      ..++.+|..|.||||+|+..++.+++++|++.++......+..|.||||+|+..++.+++++|++.|++++.+|..|.||
T Consensus       149 ~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~  228 (255)
T d1oy3d_         149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (255)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            44566889999999999999999999999999998875667889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCcHHHHHHHHHhccc
Q 044402           97 LHFVVKNGHVNMVKAIIKISET  118 (127)
Q Consensus        97 l~~a~~~~~~~~~~~Ll~~~~~  118 (127)
                      ||+|+..++.+++++|+++|..
T Consensus       229 L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999653

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2e-26  Score=133.24  Aligned_cols=103  Identities=15%  Similarity=0.166  Sum_probs=92.4

Q ss_pred             hhhcCCCCc------cccCCchhHHHHHhc---CCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhcc
Q 044402           13 INRVTKWKT------KDWNENIPLYFATSN---TYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQ   83 (127)
Q Consensus        13 l~~~~~~~~------~d~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~   83 (127)
                      +..+.+++.      .+..|.||||+|+..   ++.+++++|+++|+++. .++..|+||||+|+..|+.+++++|++.|
T Consensus        26 ~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin-~~d~~g~TpLh~A~~~~~~~~v~~Ll~~g  104 (154)
T d1dcqa1          26 YADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD-KQTGKGSTALHYCCLTDNAECLKLLLRGK  104 (154)
T ss_dssp             HHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChh-hhhhhhccccccccccccccccccccccC
Confidence            344555544      367899999999974   67899999999999986 78999999999999999999999999999


Q ss_pred             CCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           84 HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        84 ~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      ++++.+|..|.||||+|++.|+.+++++|++.+
T Consensus       105 ad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~  137 (154)
T d1dcqa1         105 ASIEIANESGETPLDIAKRLKHEHCEELLTQAL  137 (154)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccccCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            999999999999999999999999999999873

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-27  Score=132.24  Aligned_cols=111  Identities=14%  Similarity=0.083  Sum_probs=99.8

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      ++|+.|+..         +.+|++++.+|..|+||||+|+..++.+++++|++.+++.. ..+..|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~-~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-AADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccccccccccccccccccccccccccccccccccc-cccccCcccccccchhhHHH
Confidence            578889888         66789999999999999999999999999999999999886 78999999999999999999


Q ss_pred             HHHHHHhccCCCCccc-CCCCcHHHHH--HhcCcHHHHHHHHHh
Q 044402           75 VMVEMLKKQHCPMFVT-NSGYNILHFV--VKNGHVNMVKAIIKI  115 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~-~~~~t~l~~a--~~~~~~~~~~~Ll~~  115 (127)
                      ++++|++.|++++..+ ..+.|+++++  ...|+.+++++|++.
T Consensus        82 ~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          82 VCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             HHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            9999999999998766 4588887765  577889999999865

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.9e-26  Score=140.46  Aligned_cols=112  Identities=16%  Similarity=0.196  Sum_probs=104.9

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcC
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNG   71 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~   71 (127)
                      +|.||||+|+..         +..|++++.+|..|.||||+|+..++.+++++|++.+.++. ..+..|+||||+|+..|
T Consensus       102 ~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~-~~d~~g~TpL~~Aa~~g  180 (223)
T d1uoha_         102 NGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTN-IQDTEGNTPLHLACDEE  180 (223)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTT
T ss_pred             CCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccceee-eccCCCCceeccccccC
Confidence            488999999988         55788999999999999999999999999999999999986 78999999999999999


Q ss_pred             chHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           72 HVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        72 ~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      +.+++++|++.|++++.+|.+|+||||+|. .|+.++++.|++
T Consensus       181 ~~~~v~~LL~~Gad~~~~d~~g~tpl~~A~-~~~~~i~~~Ll~  222 (223)
T d1uoha_         181 RVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKRMVE  222 (223)
T ss_dssp             CHHHHHHHHHTTCCSCCCCTTSCCHHHHCC-TTHHHHHHHHHC
T ss_pred             cHHHHHHHHHCCCCCCCCCCCCCCHHHHHH-CCCHHHHhcccC
Confidence            999999999999999999999999999984 699999999985

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.5e-26  Score=134.05  Aligned_cols=113  Identities=19%  Similarity=0.246  Sum_probs=89.4

Q ss_pred             CCcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            1 MGNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      .|+||||+|+..        +..+.+++..+..|.+|+++++..++.++++++++.+.++. ..+..++||||+|+..|+
T Consensus        35 ~g~t~L~~A~~~~~~~v~~Ll~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~n-~~~~~~~t~L~~A~~~~~  113 (156)
T d1bd8a_          35 FGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-VPDGTGALPIHLAVQEGH  113 (156)
T ss_dssp             TSCCHHHHSCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSC-CCCTTSCCHHHHHHHHTC
T ss_pred             CCCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccCCCCeeecccccccc
Confidence            367888877644        55667777777778888888888888888888888877775 577778888888888888


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++|+ .|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       114 ~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         114 TAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             cccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            88888776 5778888888888888888888888888888765

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2.7e-28  Score=135.60  Aligned_cols=97  Identities=18%  Similarity=0.133  Sum_probs=63.7

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      |||++|++.         +.+|++++.+|..|.||||+|+..++.++++++++.|+++. .++..|+||||+|+..|+.+
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din-~~d~~g~tpLh~A~~~~~~~   82 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADIN-APDKHHITPLLSAVYEGHVS   82 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTT-CCSSSCSCHHHHHHTTTCCH
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhccccccccccccccccccccccccccccccccceee-ecccccccchhhhhhcCchh
Confidence            566666666         44556666666666666666666666666666666666664 55666666666666666666


Q ss_pred             HHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           75 VMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      ++++|++.|++++.+|.+|.||||+|.
T Consensus        83 ~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          83 CVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             HHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhcccccceeeCCCCCCHHHHHh
Confidence            666666666666666666666666653

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=2.4e-25  Score=133.92  Aligned_cols=98  Identities=14%  Similarity=0.144  Sum_probs=92.0

Q ss_pred             hhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCC
Q 044402           14 NRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSG   93 (127)
Q Consensus        14 ~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~   93 (127)
                      ..+.+++.++..|.|||++++..+..++++.++..+.++. ..+..|.||||+|+..|+.+++++|++.|++++.+|..|
T Consensus       111 ~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~-~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~d~~g  189 (209)
T d1ot8a_         111 TADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRD-AQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMD  189 (209)
T ss_dssp             HTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTS
T ss_pred             hhcccccccCCCCCCcchhhcccCcceeeeeecccccccc-ccccccccccchhccccHHHHHHHHHHCCCCCCCcCCCC
Confidence            3456788899999999999999999999999999999886 788899999999999999999999999999999999999


Q ss_pred             CcHHHHHHhcCcHHHHHHH
Q 044402           94 YNILHFVVKNGHVNMVKAI  112 (127)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~L  112 (127)
                      .||||+|++.|+.+++++|
T Consensus       190 ~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         190 RLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             CCHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHhhc
Confidence            9999999999999999976

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=2.4e-25  Score=137.42  Aligned_cols=77  Identities=16%  Similarity=0.063  Sum_probs=48.1

Q ss_pred             CCcchHHHHHHH---------hhhcCC---CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            1 MGNTAFHESLFI---------INRVTK---WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~---~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      +|.||||+|++.         +..+++   ++.+|..|.||||+|+..|+.+++++|++.|+++. ..+..|.|||++|+
T Consensus         8 ~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~-~~d~~g~tpL~~A~   86 (255)
T d1oy3d_           8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-VAERGGHTALHLAC   86 (255)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTSCCHHHHHT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccccccc-ccccccchhhhhhh
Confidence            478888888887         344555   55677778888888888888888888888776542 33333444444443


Q ss_pred             hcCchHHHHH
Q 044402           69 KNGHVKVMVE   78 (127)
Q Consensus        69 ~~~~~~~~~~   78 (127)
                      ..++.+++++
T Consensus        87 ~~~~~~~~~~   96 (255)
T d1oy3d_          87 RVRAHTCACV   96 (255)
T ss_dssp             TTTCHHHHHH
T ss_pred             ccCchHHHHH
Confidence            3333333333

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=1.2e-25  Score=124.75  Aligned_cols=94  Identities=17%  Similarity=0.157  Sum_probs=88.1

Q ss_pred             chhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcH
Q 044402           27 NIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHV  106 (127)
Q Consensus        27 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~  106 (127)
                      .|||++|+..|+.+++++|++.|+++. ..+..|+||||+|+..|+.++++++++.|++++.+|..|+||||+|+..|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~   81 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHV   81 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhccc-cccccccccccccccccccccccccccccceeeecccccccchhhhhhcCch
Confidence            379999999999999999999999986 7889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh-cccccc
Q 044402          107 NMVKAIIKI-SETNIS  121 (127)
Q Consensus       107 ~~~~~Ll~~-~~~~~~  121 (127)
                      +++++|+++ .+++..
T Consensus        82 ~~v~~Ll~~Gad~~~~   97 (118)
T d1myoa_          82 SCVKLLLSKGADKTVK   97 (118)
T ss_dssp             HHHHHHHTTCCCSSSS
T ss_pred             hhhhhhhcccccceee
Confidence            999999998 555543

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.5e-24  Score=124.83  Aligned_cols=108  Identities=14%  Similarity=0.211  Sum_probs=87.6

Q ss_pred             cchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhc------------------------
Q 044402            3 NTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELN------------------------   49 (127)
Q Consensus         3 ~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~------------------------   49 (127)
                      .||||.||+.         +..|++++ .|..|.||||+|+..++.+++..++...                        
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHAN   81 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc-cccCCCccccccccccccccccccccccccccccccccccccccccccccce
Confidence            3788888777         55566655 5778888888888888887777766544                        


Q ss_pred             ---------CCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHH
Q 044402           50 ---------GHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAI  112 (127)
Q Consensus        50 ---------~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~L  112 (127)
                               .+.. .++..|+||||+|+..|+.+++++|++.|++++.+|.+|.||||+|+..|+.+++++|
T Consensus        82 ~~~~l~~~~~~~~-~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_          82 IVEVLLKHGADVN-AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHHTTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             eeecccccCCccc-cccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence                     3343 5778899999999999999999999999999999999999999999999999999876

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.6e-25  Score=133.59  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=36.8

Q ss_pred             ccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           58 IKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        58 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      ..|.||||+|++.|+.+++++|++.|++++.+|.+|+||||+|+..++.+++++|++.
T Consensus       143 ~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~  200 (221)
T d1iknd_         143 CNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQL  200 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTT
T ss_pred             cCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            3456666666666666666666666666666666666666666666666666666554

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=5.8e-24  Score=129.35  Aligned_cols=119  Identities=18%  Similarity=0.248  Sum_probs=99.9

Q ss_pred             cchHHHHHHH--------h-h-hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCC---------------------
Q 044402            3 NTAFHESLFI--------I-N-RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH---------------------   51 (127)
Q Consensus         3 ~~~lh~a~~~--------l-~-~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~---------------------   51 (127)
                      .+|||+|+..        + . .+.+++.+|.+|.||||+|+..|+.+++++|++.|++                     
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~   80 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV   80 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhccccccccccccccccccccccc
Confidence            4899999998        2 2 3567888999999999999999999999999988742                     


Q ss_pred             -------------------------------------------------CcccccccCCChhhhhhhcCchHHHHHHHhc
Q 044402           52 -------------------------------------------------SAIEHNIKTLYPIHLACKNGHVKVMVEMLKK   82 (127)
Q Consensus        52 -------------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~   82 (127)
                                                                       .....+..|+||||+|+..|+.+++++|++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~  160 (229)
T d1ixva_          81 GNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGL  160 (229)
T ss_dssp             TCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             cccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhccccccccccccc
Confidence                                                             1114567788999999999999999999998


Q ss_pred             c-CCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-c-ccccc
Q 044402           83 Q-HCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-S-ETNIS  121 (127)
Q Consensus        83 ~-~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~-~~~~~  121 (127)
                      + .+++.+|.+|+||||+|+..|+.+++++|+++ | +++..
T Consensus       161 ~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~  202 (229)
T d1ixva_         161 GKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLV  202 (229)
T ss_dssp             TCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCC
T ss_pred             ccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCc
Confidence            7 46688999999999999999999999999976 4 55544

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.91  E-value=3.8e-24  Score=134.25  Aligned_cols=120  Identities=14%  Similarity=0.177  Sum_probs=104.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCC---------------------
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH---------------------   51 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~---------------------   51 (127)
                      |.|||+.||..         +.+|++++.+|..|.||||+|+..|+.+++++|++++.+                     
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~~~  119 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYL  119 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccccc
Confidence            45889999987         677899999999999999999999999999999988742                     


Q ss_pred             -----------------------------------------------------------------------CcccccccC
Q 044402           52 -----------------------------------------------------------------------SAIEHNIKT   60 (127)
Q Consensus        52 -----------------------------------------------------------------------~~~~~~~~~   60 (127)
                                                                                             .....+..+
T Consensus       120 ~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  199 (291)
T d1s70b_         120 DIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSG  199 (291)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTC
T ss_pred             chhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCC
Confidence                                                                                   011344567


Q ss_pred             CChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           61 LYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        61 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      .|||+.|+..|+.+++++|++.|++++.++..|+||||+|+..|+.+++++|+++ .+++..
T Consensus       200 ~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         200 GTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             CChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCc
Confidence            8899999999999999999999999999999999999999999999999999998 566554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.5e-24  Score=122.17  Aligned_cols=93  Identities=13%  Similarity=0.082  Sum_probs=87.3

Q ss_pred             hhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHH
Q 044402           28 IPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVN  107 (127)
Q Consensus        28 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~  107 (127)
                      ++|+.|+..|+.+++++|+++|+++. .++..|+||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..|+.+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~   81 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPS-LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQ   81 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCcc-ccccccccccccccccccccccccccccccccccccccCcccccccchhhHHH
Confidence            67999999999999999999999986 78999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHh-cccccc
Q 044402          108 MVKAIIKI-SETNIS  121 (127)
Q Consensus       108 ~~~~Ll~~-~~~~~~  121 (127)
                      ++++|+++ .+++..
T Consensus        82 ~v~~Ll~~ga~v~~~   96 (130)
T d1ycsb1          82 VCKFLVESGAAVFAM   96 (130)
T ss_dssp             HHHHHHHTTCCTTCC
T ss_pred             HHHHHHHcCCCcccc
Confidence            99999998 555543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.3e-24  Score=123.78  Aligned_cols=110  Identities=16%  Similarity=0.134  Sum_probs=68.9

Q ss_pred             chHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH
Q 044402            4 TAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK   74 (127)
Q Consensus         4 ~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~   74 (127)
                      +|||.||..         +.+|++++.+|..|.||||+|+ .++.+++++|++.++++. ..+..+.++++.++..+..+
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~-~~~~~~~~~l~~~~~~~~~~   80 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPD-LKDRTGFAVIHDAARAGFLD   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCccCCcccccccccc-cccccccccccccccccc-cccccCcccccccccccccc
Confidence            789999998         5678899999999999999775 789999999999887653 34444444444444444444


Q ss_pred             HHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           75 VMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        75 ~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      .+++++..+.+++..+..|.+|+++|+..++.+++++|+++
T Consensus        81 ~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~  121 (156)
T d1ihba_          81 TLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  121 (156)
T ss_dssp             HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccc
Confidence            44444444444444444444444444444444444444433

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=2.1e-26  Score=148.31  Aligned_cols=114  Identities=16%  Similarity=0.163  Sum_probs=96.7

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCccccc--ccCCChhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHN--IKTLYPIHL   66 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~t~l~~   66 (127)
                      .|.||||+||+.            +..+++++.+|..|.||||+||.+||.+++++|++.|+++. ..+  ..|+||||+
T Consensus        89 ~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~-~~~~~~~g~t~L~~  167 (346)
T d2ajaa1          89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI-MAMIQAENYHAFRL  167 (346)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH-HHHHSHHHHHHHHH
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-ccccccCCCChhHH
Confidence            367999999997            34678899999999999999999999999999999999875 333  468999999


Q ss_pred             hhhcCchHHHHHHHhccCCC---CcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           67 ACKNGHVKVMVEMLKKQHCP---MFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        67 a~~~~~~~~~~~l~~~~~~~---~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      |+..|+.+++++|++.|+..   +..+..+.||++.|+..|+.+++++|++.
T Consensus       168 Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         168 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             HHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence            99999999999999988766   34456677888899999999999999987

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-23  Score=125.51  Aligned_cols=121  Identities=16%  Similarity=0.181  Sum_probs=103.3

Q ss_pred             CCcchHHHHHHH--------h-----hhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCC----------------
Q 044402            1 MGNTAFHESLFI--------I-----NRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGH----------------   51 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l-----~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~----------------   51 (127)
                      +|.||||+|+..        +     ..+++++.+|..|.||||+|+..++.+++++|++.++.                
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            599999999987        2     36789999999999999999999999999999998843                


Q ss_pred             ------------------------------------------------------CcccccccCCChhhhhhhcCchHHHH
Q 044402           52 ------------------------------------------------------SAIEHNIKTLYPIHLACKNGHVKVMV   77 (127)
Q Consensus        52 ------------------------------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~   77 (127)
                                                                            ........+.++++.|+..+..++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                  11123446778889999999999999


Q ss_pred             HHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           78 EMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        78 ~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      +++..|.....++..|.||||+|+..|+.+++++|+++ .+++..
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~  206 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLK  206 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCC
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            99999999999999999999999999999999999988 555544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.1e-23  Score=137.05  Aligned_cols=112  Identities=21%  Similarity=0.253  Sum_probs=100.6

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.|||+.|+..         +..+++++..+..+.|||+.++..++.++++++++.|.++. .++..|.||||.|++.|+
T Consensus       264 g~~~l~~a~~~~~~~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~in-~~d~~G~T~Lh~A~~~g~  342 (408)
T d1n11a_         264 GLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-AKTKLGYSPLHQAAQQGH  342 (408)
T ss_dssp             CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             CCChhhhhhhcCcHHHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccccccc-ccCCCCCCHHHHHHHcCC
Confidence            67788888777         45678888888888999999999999999999999998885 788899999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHH
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIK  114 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~  114 (127)
                      .+++++|++.|++++.+|.+|.||||+|++.|+.+++++|..
T Consensus       343 ~~iv~~Ll~~GAd~n~~d~~G~t~L~~A~~~~~~~iv~~L~~  384 (408)
T d1n11a_         343 TDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKV  384 (408)
T ss_dssp             HHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999999999999999999999987753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.4e-23  Score=121.12  Aligned_cols=115  Identities=19%  Similarity=0.192  Sum_probs=105.8

Q ss_pred             CCcchHHHHHHH--------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            1 MGNTAFHESLFI--------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      .|.||||.|+..        +.++++++.++..|.++++.++..++.+.+++++..+.... ..+..+.+|+++|+..++
T Consensus        33 ~g~TpL~~A~~~~~ei~~~Ll~~~a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~l~~a~~~~~  111 (156)
T d1ihba_          33 FGRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-IEDNEGNLPLHLAAKEGH  111 (156)
T ss_dssp             TSCCHHHHCCSSCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccccccccccccccccccccccccCccccccccccccccccccccccccccc-cccccccccccccccccc
Confidence            489999988643        67789999999999999999999999999999999998885 788899999999999999


Q ss_pred             hHHHHHHHhccC-CCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           73 VKVMVEMLKKQH-CPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        73 ~~~~~~l~~~~~-~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+++++|++.+. +.+.+|..|.||||+|+..++.+++++|+++|
T Consensus       112 ~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         112 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999987 67999999999999999999999999999864

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.3e-23  Score=127.53  Aligned_cols=121  Identities=17%  Similarity=0.207  Sum_probs=85.7

Q ss_pred             CCcchHHHHHHH-------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhh
Q 044402            1 MGNTAFHESLFI-------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLA   67 (127)
Q Consensus         1 ~g~~~lh~a~~~-------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a   67 (127)
                      +|.||||+|+..             ...+.+++.+|..|+||||+|+..++.+++++|++.|+++. ..+..|.+||+.+
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~-~~d~~g~t~l~~~   79 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-LRDFRGNTPLHLA   79 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSC-CCCTTCCCHHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCcccCCCCCCcccccccccccccccccccccccccc-ccccccccccccc
Confidence            578888888766             23456778888888888888888888888888888877664 4555566666555


Q ss_pred             hhcCch---------------------------------------HHHHHHHhccCCCCccc-CCCCcHHHHHHhcCcHH
Q 044402           68 CKNGHV---------------------------------------KVMVEMLKKQHCPMFVT-NSGYNILHFVVKNGHVN  107 (127)
Q Consensus        68 ~~~~~~---------------------------------------~~~~~l~~~~~~~~~~~-~~~~t~l~~a~~~~~~~  107 (127)
                      +..++.                                       +.+++++..|...+.++ .+|.||||+|++.|+.+
T Consensus        80 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~  159 (221)
T d1iknd_          80 CEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPD  159 (221)
T ss_dssp             HHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHH
Confidence            555554                                       45555555555554444 67899999999999999


Q ss_pred             HHHHHHHh-ccccccc
Q 044402          108 MVKAIIKI-SETNISM  122 (127)
Q Consensus       108 ~~~~Ll~~-~~~~~~~  122 (127)
                      ++++|+++ .+++...
T Consensus       160 ~v~~Ll~~gad~~~~~  175 (221)
T d1iknd_         160 LVSLLLKCGADVNRVT  175 (221)
T ss_dssp             HHHHHHTTTCCSCCCC
T ss_pred             HHHHHHhcCCcccccC
Confidence            99999988 5555443

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=5.3e-24  Score=132.49  Aligned_cols=112  Identities=13%  Similarity=0.094  Sum_probs=96.7

Q ss_pred             cchHHHHHHH--------hhhcCCCCccc-cCCchhHHHHHhcCCHHHHHHH--------HHhcCCCcccccccCCChhh
Q 044402            3 NTAFHESLFI--------INRVTKWKTKD-WNENIPLYFATSNTYIRGVCFL--------LELNGHSAIEHNIKTLYPIH   65 (127)
Q Consensus         3 ~~~lh~a~~~--------l~~~~~~~~~d-~~g~t~l~~a~~~~~~~~~~~l--------l~~~~~~~~~~~~~~~t~l~   65 (127)
                      .||||.++..        .+....++..| ..|+||||+|+..|+.+++++|        ++.|++++ ..+..|.||||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn-~~d~~G~TpLh   79 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVN-AMDCDENTPLM   79 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTT-CCCTTSCCHHH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCcc-ccCCCCCeeec
Confidence            4899988777        33334555655 5699999999999999988776        45678886 78999999999


Q ss_pred             hhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh
Q 044402           66 LACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI  115 (127)
Q Consensus        66 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~  115 (127)
                      +|+..|+.+++++|++.|++++.++..|.||++++...++.++++++...
T Consensus        80 ~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1          80 LAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTS
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcchhhhhhhhhc
Confidence            99999999999999999999999999999999999999999999988765

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.6e-22  Score=124.10  Aligned_cols=118  Identities=15%  Similarity=0.090  Sum_probs=102.3

Q ss_pred             CCcchHHHHHHH--------hh--hcCCCCccccCCchhHHHHHhcC----CHHHHHHHHHhcCCCcccccccCCChhhh
Q 044402            1 MGNTAFHESLFI--------IN--RVTKWKTKDWNENIPLYFATSNT----YIRGVCFLLELNGHSAIEHNIKTLYPIHL   66 (127)
Q Consensus         1 ~g~~~lh~a~~~--------l~--~~~~~~~~d~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~t~l~~   66 (127)
                      .|.||||+|++.        +.  .+++++..+..|.+++..+...+    ..+++++|++.|+++. .++..|.||||+
T Consensus       147 ~g~t~L~~A~~~~~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n-~~~~~g~t~L~~  225 (285)
T d1wdya_         147 GGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-VRGERGKTPLIL  225 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSS-CCCTTSCCHHHH
T ss_pred             cCchHHHHHHHcCCHHHHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCC-ccCCCCCCccch
Confidence            378999999998        33  36789999999988877654433    4578999999999986 688899999999


Q ss_pred             hhhcCchHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccc
Q 044402           67 ACKNGHVKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETN  119 (127)
Q Consensus        67 a~~~~~~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~  119 (127)
                      |+..|+.+++++|++ .|++++.+|.+|.||||+|++.|+.+++++|+++ .+++
T Consensus       226 a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n  280 (285)
T d1wdya_         226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTD  280 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSC
T ss_pred             hhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            999999999999997 4899999999999999999999999999999999 5544

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=2.5e-22  Score=115.43  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=80.7

Q ss_pred             chhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchH--------------------------------
Q 044402           27 NIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVK--------------------------------   74 (127)
Q Consensus        27 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~--------------------------------   74 (127)
                      .|||+.|+..|+.+++++|+++|++..  .+..|+||||+|+..++.+                                
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA   80 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCccccccccccccccccccccccccccccccccccccccccccccc
Confidence            489999999999999999999999764  6888999999999887755                                


Q ss_pred             -HHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           75 -VMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        75 -~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                       .++++...+++...++..|+||||+|+..|+.+++++|++. .+++..
T Consensus        81 ~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~  129 (153)
T d1awcb_          81 NIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQ  129 (153)
T ss_dssp             HHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             eeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCccc
Confidence             45666667778888999999999999999999999999998 555543

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.7e-22  Score=116.76  Aligned_cols=115  Identities=12%  Similarity=0.115  Sum_probs=102.5

Q ss_pred             chHHHHHHH---------hh-hcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCch
Q 044402            4 TAFHESLFI---------IN-RVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHV   73 (127)
Q Consensus         4 ~~lh~a~~~---------l~-~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~   73 (127)
                      ..|+.||..         +. .+.+++.+|..|.||||+|+ .++.+++++|++.+.++. ..+..+.+|++.++..++.
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~-~~~~~~~~~l~~~~~~~~~   81 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPN-VQDTSGTSPVHDAARTGFL   81 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCccCCCCCccccccc-cccccccccccccccccc-ccccccccccccccccccc
Confidence            468889888         33 46789999999999999886 588999999999999986 6788899999999999999


Q ss_pred             HHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhccccc
Q 044402           74 KVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKISETNI  120 (127)
Q Consensus        74 ~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~~~~~  120 (127)
                      ++++++++.|++++.++..|+||||+|+..|+.+++++|++..+++.
T Consensus        82 ~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~~~~~  128 (156)
T d1bd8a_          82 DTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR  128 (156)
T ss_dssp             HHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTSCTTC
T ss_pred             cccccccccccccccccCCCCeeeccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999986565544

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=8.5e-23  Score=124.12  Aligned_cols=112  Identities=20%  Similarity=0.155  Sum_probs=98.0

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      +.+|++.++..         +..+...+.+|..|.||||+|+..++.+++++|++.+....+.++..|+||||+|+..|+
T Consensus       105 ~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~  184 (229)
T d1ixva_         105 GVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH  184 (229)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence            45777777665         456677888999999999999999999999999998865545788899999999999999


Q ss_pred             hHHHHHHHh-ccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHhc
Q 044402           73 VKVMVEMLK-KQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        73 ~~~~~~l~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .+++++|++ .|++++.+|..|+|||++|+.   .+++++|+++|
T Consensus       185 ~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g  226 (229)
T d1ixva_         185 GDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNV  226 (229)
T ss_dssp             HHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcC
Confidence            999999997 599999999999999999984   48999999874

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=3.2e-22  Score=115.39  Aligned_cols=85  Identities=12%  Similarity=0.053  Sum_probs=78.1

Q ss_pred             CCcchHHHHHHH------------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhh
Q 044402            1 MGNTAFHESLFI------------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLAC   68 (127)
Q Consensus         1 ~g~~~lh~a~~~------------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~   68 (127)
                      .|+||||+|+..            +..|++++.+|..|.||||+|+..++.+++++|+++|+++. .++..|.||||+|+
T Consensus        44 ~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~-~~d~~g~tpL~~A~  122 (154)
T d1dcqa1          44 PDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIE-IANESGETPLDIAK  122 (154)
T ss_dssp             TTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHH
T ss_pred             CCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccccccccccccCcccc-ccCCCCCCHHHHHH
Confidence            478999999974            55789999999999999999999999999999999999996 78999999999999


Q ss_pred             hcCchHHHHHHHhccCCC
Q 044402           69 KNGHVKVMVEMLKKQHCP   86 (127)
Q Consensus        69 ~~~~~~~~~~l~~~~~~~   86 (127)
                      ..|+.+++++|++.+...
T Consensus       123 ~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1         123 RLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HTTCHHHHHHHHHHHTTC
T ss_pred             HcCCHHHHHHHHHhCCCC
Confidence            999999999999976544

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2e-21  Score=126.39  Aligned_cols=119  Identities=19%  Similarity=0.240  Sum_probs=107.7

Q ss_pred             CcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            2 GNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         2 g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      |.||||.|+..         ...+...+..+..|.||++.++..++.+++++|+++|+++. ..+..+.|||+.++..++
T Consensus       231 ~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~~~-~~~~~~~t~L~~~~~~~~  309 (408)
T d1n11a_         231 GVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGN  309 (408)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCSSCCCHHHHHHHSSC
T ss_pred             CCCHHHHHHHhCcHhHhhhhhccccccccccCCCCChhhhhhhcCcHHHHHHHHHCCCccc-cccccccccchhhcccCc
Confidence            67899988877         44556788889999999999999999999999999999986 677788999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      .++++++++.|++++.+|.+|+||||+|++.|+.+++++|+++ .+++..
T Consensus       310 ~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~  359 (408)
T d1n11a_         310 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEV  359 (408)
T ss_dssp             SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCC
T ss_pred             ceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            9999999999999999999999999999999999999999999 565543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=9.2e-22  Score=109.89  Aligned_cols=94  Identities=16%  Similarity=0.162  Sum_probs=84.6

Q ss_pred             CchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCC-cHHHHHHhcC
Q 044402           26 ENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGY-NILHFVVKNG  104 (127)
Q Consensus        26 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-t~l~~a~~~~  104 (127)
                      +.++||+|+..|+.+++++|+++|+++. ..+..|.||+|+|+ .|+.+++++|++.|++++.++..+. ||||+|++.|
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGANPN-APNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCccc-cccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            4689999999999999999999999986 78899999999775 7999999999999999999987776 6999999999


Q ss_pred             cHHHHHHHHHh-cccccc
Q 044402          105 HVNMVKAIIKI-SETNIS  121 (127)
Q Consensus       105 ~~~~~~~Ll~~-~~~~~~  121 (127)
                      +.+++++|++. .+++..
T Consensus        81 ~~~~v~~Ll~~ga~~~~~   98 (125)
T d1bi7b_          81 FLDTLVVLHRAGARLDVR   98 (125)
T ss_dssp             CHHHHHHHHHHTCCSSCC
T ss_pred             cccccccccccccccccc
Confidence            99999999998 555443

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=5e-22  Score=125.56  Aligned_cols=37  Identities=16%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCcccCCCCcHHHHHHhcCcHHHHHHHHHh-ccccccc
Q 044402           86 PMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNISM  122 (127)
Q Consensus        86 ~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~~  122 (127)
                      ++.+|..|+||||+|++.|+.+++++|++. .+++..+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n  289 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIAN  289 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Confidence            456788999999999999999999999998 6655543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.83  E-value=6.2e-22  Score=127.35  Aligned_cols=97  Identities=14%  Similarity=0.271  Sum_probs=83.4

Q ss_pred             CCccccCCchhHHHHHhcCCHHHHHH---HHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCccc--CCC
Q 044402           19 WKTKDWNENIPLYFATSNTYIRGVCF---LLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVT--NSG   93 (127)
Q Consensus        19 ~~~~d~~g~t~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--~~~   93 (127)
                      ++.++..|.|||++||++|+.+++++   |++.++++. ..+..|+||||+|+..|+.+++++|++.|++++..+  .+|
T Consensus        83 ~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g  161 (346)
T d2ajaa1          83 AHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVK-VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN  161 (346)
T ss_dssp             HHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH
T ss_pred             HHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCccc-ccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCC
Confidence            34577889999999999999887765   788888886 688899999999999999999999999999997765  468


Q ss_pred             CcHHHHHHhcCcHHHHHHHHHhc
Q 044402           94 YNILHFVVKNGHVNMVKAIIKIS  116 (127)
Q Consensus        94 ~t~l~~a~~~~~~~~~~~Ll~~~  116 (127)
                      .||||+|+..|+.+++++|++.+
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~  184 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELA  184 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSC
T ss_pred             CChhHHHHHHhhHHHHHHHHHcC
Confidence            99999999999999999999873

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.83  E-value=1.2e-20  Score=113.07  Aligned_cols=67  Identities=12%  Similarity=0.140  Sum_probs=61.3

Q ss_pred             cccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHHHHHHh-cccccc
Q 044402           55 EHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVKAIIKI-SETNIS  121 (127)
Q Consensus        55 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~Ll~~-~~~~~~  121 (127)
                      ..+..|+|||+.++..+..++++.++..+.+++..|..|.||||+|+..|+.+++++|+++ ++++..
T Consensus       118 ~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~n~~  185 (209)
T d1ot8a_         118 AADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNFANREIT  185 (209)
T ss_dssp             CBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCC
T ss_pred             ccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCCCCCCCc
Confidence            5677889999999999999999999999999999999999999999999999999999998 555543

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.1e-19  Score=106.89  Aligned_cols=107  Identities=13%  Similarity=0.106  Sum_probs=91.7

Q ss_pred             cchHHHHHHH--------hhh-cCC-CCccccCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCc
Q 044402            3 NTAFHESLFI--------INR-VTK-WKTKDWNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGH   72 (127)
Q Consensus         3 ~~~lh~a~~~--------l~~-~~~-~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~   72 (127)
                      .++|+.+...        +.. ..+ ....+..+.++++.|+..+...+++++++.+.... .++..|.|||++|+..|+
T Consensus       111 ~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~L~~A~~~g~  189 (228)
T d1k1aa_         111 LTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN-AQMYSGSSALHSASGRGL  189 (228)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CBCTTSCBHHHHHHHHTC
T ss_pred             ccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccccc-cccccCcchHHHHHHcCC
Confidence            4567766665        222 222 33466779999999999999999999999998875 788899999999999999


Q ss_pred             hHHHHHHHhccCCCCcccCCCCcHHHHHHhcCcHHHHH
Q 044402           73 VKVMVEMLKKQHCPMFVTNSGYNILHFVVKNGHVNMVK  110 (127)
Q Consensus        73 ~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~  110 (127)
                      .+++++|++.|++++.+|.+|+||||+|++.|+.+++|
T Consensus       190 ~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         190 LPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             HHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             HHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            99999999999999999999999999999999998875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.78  E-value=9.6e-19  Score=109.35  Aligned_cols=92  Identities=20%  Similarity=0.246  Sum_probs=86.7

Q ss_pred             cCCchhHHHHHhcCCHHHHHHHHHhcCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHHhc
Q 044402           24 WNENIPLYFATSNTYIRGVCFLLELNGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVVKN  103 (127)
Q Consensus        24 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~  103 (127)
                      ..+.|+|+.||..|+.++|++|++.|++++ ..+..|+||||+|+..|+.+++++|++.|++....+..+.+||+.++..
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~  116 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC  116 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCC-ccCCCCCcHHHHHHhcCCceeeeeecccccccccccccccccccccccc
Confidence            345699999999999999999999999986 7899999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHhc
Q 044402          104 GHVNMVKAIIKIS  116 (127)
Q Consensus       104 ~~~~~~~~Ll~~~  116 (127)
                      ++.++++.|++++
T Consensus       117 ~~~~~~~~l~~~~  129 (291)
T d1s70b_         117 GYLDIAEYLISQG  129 (291)
T ss_dssp             TCHHHHHHHHHTT
T ss_pred             cccchhhcccccC
Confidence            9999999999884

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=8.2e-19  Score=110.69  Aligned_cols=101  Identities=16%  Similarity=0.140  Sum_probs=81.8

Q ss_pred             CCcchHHHHHHH---------hhhcCCCCccccCCchhHHHHHhcCCH-------HHHHHHH------------------
Q 044402            1 MGNTAFHESLFI---------INRVTKWKTKDWNENIPLYFATSNTYI-------RGVCFLL------------------   46 (127)
Q Consensus         1 ~g~~~lh~a~~~---------l~~~~~~~~~d~~g~t~l~~a~~~~~~-------~~~~~ll------------------   46 (127)
                      +|+||||+||..         +..|++++.+|..|.||||.|+..++.       ++++++.                  
T Consensus       106 ~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh~~~  185 (301)
T d1sw6a_         106 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHII  185 (301)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHHHHH
Confidence            489999999987         778999999999999999999986641       2333221                  


Q ss_pred             ------------------------HhcCCC------------------------------------cccccccCCChhhh
Q 044402           47 ------------------------ELNGHS------------------------------------AIEHNIKTLYPIHL   66 (127)
Q Consensus        47 ------------------------~~~~~~------------------------------------~~~~~~~~~t~l~~   66 (127)
                                              ..+...                                    .+.++..|+||||+
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~  265 (301)
T d1sw6a_         186 ITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI  265 (301)
T ss_dssp             HHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHH
T ss_pred             HHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHH
Confidence                                    111110                                    12457789999999


Q ss_pred             hhhcCchHHHHHHHhccCCCCcccCCCCcHHHHHH
Q 044402           67 ACKNGHVKVMVEMLKKQHCPMFVTNSGYNILHFVV  101 (127)
Q Consensus        67 a~~~~~~~~~~~l~~~~~~~~~~~~~~~t~l~~a~  101 (127)
                      |++.|+.+++++|++.|++++.+|..|.|||++|+
T Consensus       266 A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         266 AARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            99999999999999999999999999999999985

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=6.7e-18  Score=104.97  Aligned_cols=78  Identities=14%  Similarity=0.045  Sum_probs=71.8

Q ss_pred             hhhcCCCCccccCCchhHHHHHhcCCHHHHHHHHHh-cCCCcccccccCCChhhhhhhcCchHHHHHHHhccCCCCcccC
Q 044402           13 INRVTKWKTKDWNENIPLYFATSNTYIRGVCFLLEL-NGHSAIEHNIKTLYPIHLACKNGHVKVMVEMLKKQHCPMFVTN   91 (127)
Q Consensus        13 l~~~~~~~~~d~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~   91 (127)
                      +.+|++++.+|..|.||||+|+..++.+++++|++. +.++. ..+..|.||||+|++.|+.+++++|++.|++++.+|.
T Consensus       206 i~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din-~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             HHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             HHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCc-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            567899999999999999999999999999999985 77775 7888999999999999999999999999999998873