Citrus Sinensis ID: 044407

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700--
Protein Sequence
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKAKCRRIRRKIARELFPSNSHSNEQCNRHSRTRMGCKTQMPTGRCSDDDEESQEENNDEEYQIEGYSSENDKGYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQIIQ
Secondary Structure (PSIPRED)
ccccccccEEEEEcEEEEccccccccccccccccccccccccccccccccccccccccHHccHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccEEccHHHHHHHHHHHHHHccEEEEEEEEcccEEEEEEccccccEEEEEEEEEccEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHccccHHHHHccHHHHHHHHHcccccEEEEEEEcccccccEEEEEEEEEEccHHHHHHHccEEEEEccccccccccccEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHccccccccEEEccccccccccHHHccccHHHHHHHHHHHHHcccccccccHHHHHcccccccccEEcHHHHHHHHcccHHHHHHHHcccccccHHccccccccccEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccccEEEEEEcccEEEEEEcccEEEEEEcEEcEEEEccccccccccHHHHHHHHHHHccccHHccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEccEEEEcccccccEEEccccccccccccccccccccccccccccHcccccEEEcccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccccEEEEcEEcccHHHHHHHHHHHHHHccccEEEEEccccEEEEEEccccccEEEEEEEcccccEEEEEEEccccEcccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccEEcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHEEEHHHHHHHHHHccccEEEEEcEEEccccccEEEEEEEEcccccEEEEEEEEEEccccHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHHHHHccHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccEEEEEEcccEEEEEEEcccEEEEEEEcccEccccccccccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHccccccccccccccccccccccccHHHHccEcccccccccc
Coil and Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirtrscgsrlrgnsandtdrpEQLLKAKCRRIRRKIARelfpsnshsneqcnrhsrtrmgcktqmptgrcsdddeesqeenndeeyqiegyssendkgymyrltddetpchvgewfkfedpprhkmilyhgqrfrdvSHFRKAIEVFAIRDGFKLCImenrghavsyecsdlrcdwkikagrvvngRTFIVKEFVAQHkctrrhqqfqdrPKWISAIYLHRwklqpnlrtvdiRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLEtkrheygevERFKRMFVCWERTSYAFKNHCRRLLAVdgwkinnpyNSVMLVAAAldgnngilpiaFCEVQVEDLDSWVFFIKNINNALRlehgeglcimgdgdngiDYAVEEFLPKAVYRQCCLKIFTQMVkrfptapvehffwsacrstsaTSFNKYMDLIHNESEECHDWLLqtdwsswalftipkwVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLveengprlkltdtRSLLFDLNmeaqscscglwqisgipcahaCKGIQLIMGNVEEYVDNMMSVQNFcsmyapgmmpfpekhawkwgtlmrvHPAELVNALKITLTLPQIIQ
Flexible Loop (DISEMBL)
meedkqsgvvdrkrqtrqknggstkqtinktspeyirtrscgsrlrgnsandtdrpeqllKAKCRRIRRKIarelfpsnshsneqcnrhsrtrmgcktqmptgrcsdddeesqeenndeeyqiegyssendKGYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFvaqhkctrrhqqfqdrpkWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNivlletkrheygeverfKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERrrmevwnwyrekvtptvrevikdrtidgqrfvlveengprlkltDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKitltlpqiiq
Low Complexity Region (SEG)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLkakcrrirrkiarELFPSNSHSNEQCNRHSRTRMGCKTQMPTGRCsdddeesqeenndeeYQIEGYSSENDKGYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQIIQ
Disordered region (IsUnstruct)
************************************************************************************************************************************GYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQI**
Disordered Region (DISOPRED)
************************************************************************************************************************************************CHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELV**************
Disordered Region (DISEMBL)
**************************TINKTSPEYIRTRSCGS************PEQLLKAKCRRIRRKIARELFPS**************RMGC*************************QIEGYSSENDKGYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQ**********QDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQIIQ
Disordered Region (DISPRO)
***DKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLR*NSANDTDRP****KAKCRR**RKI****************************************************************************GEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQII*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEEDKQSGVVDRKRQTRQKNGGSTKQTINKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKAKCRRIRRKIARELFPSNSHSNEQCNRHSRTRMGCKTQMPTGRCSDDDEESQEENNDEEYQIEGYSSENDKGYMYRLTDDETPCHVGEWFKFEDPPRHKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWKWGTLMRVHPAELVNALKITLTLPQIIQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	702
225429092	583	PREDICTED: uncharacterized protein LOC10	0.712	0.857	0.259	5e-47
224105815	589	predicted protein [Populus trichocarpa]	0.713	0.850	0.266	3e-45
356565507	748	PREDICTED: uncharacterized protein LOC10	0.696	0.653	0.238	2e-44
356521263	582	PREDICTED: uncharacterized protein LOC10	0.707	0.853	0.259	3e-44
356527977	582	PREDICTED: uncharacterized protein LOC10	0.710	0.857	0.25	6e-44
147780251	1076	hypothetical protein VITISV_037761 [Viti	0.696	0.454	0.243	2e-43
225450448	768	PREDICTED: uncharacterized protein LOC10	0.696	0.636	0.243	2e-43
449520056	582	PREDICTED: uncharacterized LOC101204073	0.700	0.845	0.246	4e-43
147865779	1147	hypothetical protein VITISV_020810 [Viti	0.696	0.426	0.234	6e-43
225432189	746	PREDICTED: uncharacterized protein LOC10	0.696	0.655	0.234	7e-43

>gi|225429092|ref|XP_002269076.1| PREDICTED: uncharacterized protein LOC100253276 isoform 1 [Vitis vinifera] gi|359475510|ref|XP_003631693.1| PREDICTED: uncharacterized protein LOC100253276 isoform 2 [Vitis vinifera] gi|147838852|emb|CAN72363.1| hypothetical protein VITISV_011058 [Vitis vinifera]

 Score =  196 bits (497), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 134/516 (25%), Positives = 245/516 (47%), Gaps = 16/516 (3%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L I+++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFADVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCATEGCPWRIRAVKLPNAPTFT 68

Query: 226 VKEFVAQHKCTRRHQ--QFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           ++     H C +  Q    Q    WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSLEGTHTCGKNAQNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +   A +R    +    E+GY +L  + +E++R N  ++  + T     G   RF+R+FV
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPAYCEEIKRANPGSVAEVFTS----GADNRFQRLFV 184

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  + Y F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V  E+ +SW
Sbjct: 185 SFYASIYGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDAENDESW 244

Query: 404 VFFIKNINNALRL--EHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFP 461
           ++F+  +  AL +  E+   L  + DG  GI  AV+   P + +  C   +   + K F 
Sbjct: 245 MWFLSELRKALEMNTENVPQLTFLSDGQKGIQDAVKRKFPTSSHAFCMRHLSESIGKEFK 304

Query: 462 TAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICV 521
            + + H  W A  +T+  +F + M  I   S E   W+ Q   S WAL    +  +   +
Sbjct: 305 NSRLVHLLWKAAYATTTIAFKEKMAEIEEVSSEAAKWIQQFPTSRWALVYF-EGTRYGHL 363

Query: 522 TLSITDKLRNYLHQYLEMSIASRYVAI-ARLTAELFERRRMEVWNWYREKVTPTVREVIK 580
           + +I ++   ++ +  E+ I      I ++L AE FE RR++  +W+   + P+  + + 
Sbjct: 364 SSNI-EEFNKWILEARELPIIQVIEQIHSKLMAE-FEERRLKSNSWF-SVLAPSADKRMM 420

Query: 581 DRTIDGQRFVLVEENGPRLK-LTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQL 639
           +       + ++  +    + L+  RS +  +N+  Q CSC  WQ+ GIPC+HA   +  
Sbjct: 421 EAIGRASTYQVLRSDEVEFEVLSAERSDI--VNIGTQCCSCRDWQLYGIPCSHAVAALLS 478

Query: 640 IMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWK 675
              +V  + +   +V ++ + Y+  + P P K  W+
Sbjct: 479 CRKDVYAFTEKCFTVASYRAAYSEEIRPIPCKIEWR 514

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105815|ref|XP_002313941.1| predicted protein [Populus trichocarpa] gi|222850349|gb|EEE87896.1| predicted protein [Populus trichocarpa]

 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 137/515 (26%), Positives = 236/515 (45%), Gaps = 14/515 (2%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L I+++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCASEGCPWRIRAVKLPNVPTFT 68

Query: 226 VKEFVAQHKCTRRHQ--QFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           V+     H C R  Q    Q    WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  VRSLEGTHTCGRNAQNGHHQASVDWIVSFIEERLRNNTNYKPKDILHDIHQQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +   A +R    +    E+GY +L  + ++++R N  ++  + T     G   RF R+F+
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYCLLPSYCEQIKRTNPGSVAEVFTT----GADNRFHRLFI 184

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  +   F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V VE+ +SW
Sbjct: 185 SFFGSINGFLNGCLPIVGLGGIQLKSKYLGTLLSATSFDADGGLFPLAFGVVDVENDESW 244

Query: 404 VFFIKNINNALRL--EHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFP 461
           ++F+  +  AL +  E+   L  + DG  GI  AV    P + +  C   +   + K F 
Sbjct: 245 MWFLSELQKALEMNTENMPRLTFLCDGQKGIVDAVRRKFPSSSHAFCLRHLSESIGKEFK 304

Query: 462 TAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICV 521
            + + H  W A  +T+   F + M  I   S     WL Q   S WAL    +  +   +
Sbjct: 305 NSRLVHLLWKAAYATTTIHFKEKMLEISEVSSAAAKWLQQFPPSRWALVYF-EGTRYGHL 363

Query: 522 TLSITDKLRNYLHQYLEMSIASRYVAI-ARLTAELFERRRMEVWNWYREKVTPTVREVIK 580
           + +I D+   ++ +  E+ I      I ++L AE F+ R+M+  +W+        + +I+
Sbjct: 364 SSNI-DEFNRWILEARELPIIQVIERIHSKLMAE-FQDRQMKSNSWFSVLAPSAEKRMIE 421

Query: 581 DRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGIQLI 640
                    VL  +      L+  RS +  +N+   SCSC  WQ+ GIPC+HA   +   
Sbjct: 422 AINHASAYQVLRSDEVEFEVLSADRSDI--VNIGTHSCSCRGWQLYGIPCSHAVAALVSC 479

Query: 641 MGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWK 675
             +V  + +   +V  +   YA  + P PE+  W+
Sbjct: 480 RKDVYAFTEKCFTVAGYREAYAETIHPIPERIEWR 514

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565507|ref|XP_003550981.1| PREDICTED: uncharacterized protein LOC100809446 [Glycine max]

 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 123/515 (23%), Positives = 235/515 (45%), Gaps = 26/515 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIV 226
           QRF   S FR+A+  ++I  GF     +N  H V+ +C    C W++ A R+   +   +
Sbjct: 186 QRFNSFSEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRVYASRLSTTQLICI 245

Query: 227 KEFVAQHKC--TRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAK 284
           K+    H C  +     ++    W+ +I   + K  PN +  DI D+I+  YG+  + ++
Sbjct: 246 KKMHCDHTCEGSAVKAGYRATRGWVGSIIKEKLKDSPNYKPKDIADDIKREYGIQLNYSQ 305

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 344
              A + A+  L   + + Y  L  F ++++  N  +     TK     E   F R+FV 
Sbjct: 306 AWRAKEIAREQLQGSYIEAYTQLPLFCEKIKETNPGSFATFTTK-----EDSSFHRLFVA 360

Query: 345 WERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWV 404
           +  ++  F+  CR L+ +D   +N+ Y   +L A A+DGN+GI P+AF  V  E  D+W 
Sbjct: 361 FHASTSGFQLGCRPLIFLDTTPLNSKYQGELLAATAVDGNDGIFPVAFAVVDTETEDNWR 420

Query: 405 FFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAP 464
           +F++ +   L     E +  + D  NG+  ++ +   K  Y   CL+   + + +     
Sbjct: 421 WFLQELK--LATSTSEKITFVADFQNGLKKSLSDVFEKC-YHSYCLRHLAEKLNKDLKGQ 477

Query: 465 VEHF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPK 514
             H         F++A  +    +F + ++ I   S E +DW++Q++   W  A F   +
Sbjct: 478 FSHEARRFMVNDFYAAAYAPKLETFERSVENIKGISPEAYDWVIQSEPEHWANAFFNGAR 537

Query: 515 WVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPT 574
           +     ++ +   +  +++ +  E+ I     A+     E    RR+E   W   K+TP+
Sbjct: 538 YN---LLSSNFGQQFYSWVSEAHELPITQMIDALRGKMMETIYTRRVESNQWMT-KLTPS 593

Query: 575 VREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHAC 634
             E+++  T+      ++   G   ++      + D+  +   CSC  WQ++G+PC HA 
Sbjct: 594 KEELLQKETLVAPSLQVLFSQGSTFEVRGESVDIVDI--DNWDCSCKGWQLTGVPCCHAI 651

Query: 635 KGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFP 669
              + +  +  +Y     +V+N+   YA  + P P
Sbjct: 652 AVFECVGRSPYDYCSRYFTVENYRLTYAESIHPVP 686

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521263|ref|XP_003529276.1| PREDICTED: uncharacterized protein LOC100800865 [Glycine max]

 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 134/517 (25%), Positives = 237/517 (45%), Gaps = 20/517 (3%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L  +++       +C+   C W+I+A ++ N  TF 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAPTFT 68

Query: 226 VKEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           ++     H C R   +   Q    WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +   A +R    +    E+GY +L  + +++++ N  ++  + T     G   RF+R+FV
Sbjct: 129 QAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFTT----GADNRFQRLFV 184

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  +   F N C  ++ + G ++ + Y S +L A + D + G+ P+AF  V VE+ DSW
Sbjct: 185 SFYASITGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVENDDSW 244

Query: 404 VFFIKNINNALRL--EHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFP 461
            +F+  ++  L +  E       + DG N I  AV    P + +  C   +   + K F 
Sbjct: 245 TWFLSELHKVLEVNTECMPEFIFLSDGLNSITDAVRRKFPSSSHAFCMRHLTESIGKEFK 304

Query: 462 TAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICV 521
            + + H  W A  ST+  +F + M  I   S E   WL Q   S WAL    K  +   +
Sbjct: 305 NSRLVHLLWKASYSTTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHF-KGTRFGHL 363

Query: 522 TLSITDKLRNYLHQYLEMSIASRYVAIARLTAEL---FERRRMEVWNWYREKVTPTVREV 578
           + +I ++   ++    E+ I      I R+ ++L   F+ RR++  +W    + P+  ++
Sbjct: 364 SSNI-EEFNKWILDARELPIIQ---VIERIHSKLKTEFDDRRLKSSSWC-SVLAPSAEKL 418

Query: 579 IKDRTIDGQRFVLVEENGPRLK-LTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHACKGI 637
           + +         ++  N    + L+  RS +  +N+ + SCSC  WQ++GIPC+HA   +
Sbjct: 419 MTEAINRASTHQVLRSNEVEFEVLSADRSDI--VNIGSHSCSCRDWQLNGIPCSHAAAAL 476

Query: 638 QLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAW 674
                +V  +     +  +F   YA  + P P K  W
Sbjct: 477 ISCRKDVYAFSQKCFTAASFRDTYAETIHPIPGKLEW 513

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527977|ref|XP_003532582.1| PREDICTED: uncharacterized protein LOC100775909 [Glycine max]

 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 130/520 (25%), Positives = 239/520 (45%), Gaps = 21/520 (4%)

Query: 163 LYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGR 222
            + GQ+F DV  FR AI+  AI   F+L  +++       +C+   C W+I+A ++ N  
Sbjct: 6   FFVGQKFHDVKAFRNAIKEAAIAQHFELRTIKSDLIRYFAKCASDGCPWRIRAVKLPNAP 65

Query: 223 TFIVKEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVC 280
           TF ++     H C R   +   Q    WI +    R +   N +  DI  +I   YG+  
Sbjct: 66  TFTIRSIDGTHTCGRNANNGHHQASVDWIVSFIEERLRDNINYKPKDILHDIHKQYGITI 125

Query: 281 HEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKR 340
              +   A +R    +    E+GY +L  + +++++ N  ++  + T     G   RF+R
Sbjct: 126 PYKQAWRAKERGLAAIYGSSEEGYYLLPSYCEQIKKTNPGSVAEVFT-----GADNRFQR 180

Query: 341 MFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDL 400
            FV +  +   F N C  ++ + G ++ + Y S +L A + D + G+ P+AF  V VE+ 
Sbjct: 181 FFVSFYASINGFVNGCLPIVGLGGIQLKSKYLSTLLSATSFDADGGLFPLAFGVVDVEND 240

Query: 401 DSWVFFIKNINNALRL--EHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVK 458
           DSW +F+  ++  L +  E       + DG  GI  AV    P + +  C   +   + K
Sbjct: 241 DSWTWFLSELHKVLEVNTECMPKFIFLSDGQKGITDAVRRKFPSSSHALCMRHLTESIGK 300

Query: 459 RFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKC 518
            F  + + H  W A  +T+  +F + M  I   S E   WL Q   S WAL    K  + 
Sbjct: 301 EFKNSRLVHLLWKASHATTTIAFKEKMGEIEEVSPEAAKWLQQFHPSQWALVHF-KGTRF 359

Query: 519 ICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAEL---FERRRMEVWNWYREKVTPTV 575
             ++ +I ++   ++    E+ I      I R+ ++L   F+ RR++  +W    + P+ 
Sbjct: 360 GHLSSNI-EEFNKWILDTRELPIIQ---VIERIHSKLKTEFDDRRLKSSSWC-SVLAPSA 414

Query: 576 REVIKDRTIDGQRFVLVEENGPRLK-LTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHAC 634
            +++ +       + ++  +    + L+  RS +  +N+ + SCSC  WQ++GIPC+HA 
Sbjct: 415 EKLMTEAIDHASTYQVLRSDEVEFEVLSADRSDI--VNIGSHSCSCRDWQLNGIPCSHAT 472

Query: 635 KGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAW 674
             +     +V  +     +  ++ + YA  +   P K  W
Sbjct: 473 AALISCRKDVYAFTQKCFTAASYRNTYAEAIHHIPGKLEW 512

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147780251|emb|CAN65744.1| hypothetical protein VITISV_037761 [Vitis vinifera]

 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 239/517 (46%), Gaps = 28/517 (5%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N  H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VKEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           +K+  A H C        +Q    W+++I + + K+ PN +  DI ++I+  YG+  +  
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +     + AK  L   +++ Y+ L  F +++   N  +     TK     E   F R+FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTK-----EDSSFHRLFV 378

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  + Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 404 VFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA 463
            +F+  + +A  L     +  + D + G+  ++ E   +  +   CL+  T+ + +    
Sbjct: 439 HWFLLQLKSA--LPTSRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKG 495

Query: 464 PVEH--------FFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIP 513
              H         F++A  +    SF + ++ I + S E ++WL+Q++  +W  A F   
Sbjct: 496 QFSHEVKRLMVEDFYAAAYAPRPESFQRCLESIKSISLEAYNWLIQSEPMNWANAFFQGA 555

Query: 514 KWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTP 573
           ++     +  +  +   ++  +  E+ I      I     ELF  RR +   W   ++TP
Sbjct: 556 RYNH---MASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWM-TRLTP 611

Query: 574 TVREVIKDRTIDGQRFVLVEENGPRLKL-TDTRSLLFDLNMEAQSCSCGLWQISGIPCAH 632
           ++ E ++  T+  +   ++   G   ++  DT  +   ++++   CSC  WQ++G+PC H
Sbjct: 612 SMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQLTGLPCCH 668

Query: 633 ACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFP 669
           A   I  I  +  EY     + +++   Y+  + P P
Sbjct: 669 AIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450448|ref|XP_002276424.1| PREDICTED: uncharacterized protein LOC100251030 [Vitis vinifera]

 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/517 (24%), Positives = 239/517 (46%), Gaps = 28/517 (5%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQRF  V  FR+A+  +AI   F     +N  H V+ +C    C W+I A R+   +   
Sbjct: 204 GQRFSGVHEFREALRKYAIAHQFAFRYKKNDSHRVTVKCKAEGCPWRIHASRLSTTQLIC 263

Query: 226 VKEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           +K+  A H C        +Q    W+++I + + K+ PN +  DI ++I+  YG+  +  
Sbjct: 264 IKKMNATHTCEGAVVTTGYQATRSWVASIIMDKLKVFPNYKPKDIVNDIKQEYGIQLNYF 323

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +     + AK  L   +++ Y+ L  F +++   N  +     TK     E   F R+FV
Sbjct: 324 QAWRGKEIAKEQLQGSYKEAYSQLPFFCEKIMETNPGSFATFTTK-----EDSSFHRLFV 378

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  + Y F+  CR LL +D   + + Y   +L A A DG++G+ P+AF  V  E  D+W
Sbjct: 379 SFHASLYGFQQGCRPLLFLDSISLKSKYQGTLLAATAADGDDGVFPVAFSVVDAETDDNW 438

Query: 404 VFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA 463
            +F+  + +A  L     +  + D + G+  ++ E   +  +   CL+  T+ + +    
Sbjct: 439 HWFLLQLKSA--LPTSRPITFVADREKGLRESIAEIF-QGSFHGYCLRYLTEQLLKDLKG 495

Query: 464 PVEH--------FFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIP 513
              H         F++A  +    SF + ++ I + S E ++WL+Q++  +W  A F   
Sbjct: 496 QFSHEVKRLMVEDFYAAAYAPRPESFQRCLETIKSISLEAYNWLIQSEPMNWANAFFQSA 555

Query: 514 KWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTP 573
           ++     +  +  +   ++  +  E+ I      I     ELF  RR +   W   ++TP
Sbjct: 556 RYNH---MASNFGELFYSWASEAHELPITQMVDVIRGKIMELFFTRRTDSNQWMT-RLTP 611

Query: 574 TVREVIKDRTIDGQRFVLVEENGPRLKL-TDTRSLLFDLNMEAQSCSCGLWQISGIPCAH 632
           ++ E ++  T+  +   ++   G   ++  DT  +   ++++   CSC  WQ++G+PC H
Sbjct: 612 SMEEKLEKETVKVRPLQVLLSGGNTFEVRGDTIEV---VDIDHWDCSCKGWQLTGLPCCH 668

Query: 633 ACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFP 669
           A   I  I  +  EY     + +++   Y+  + P P
Sbjct: 669 AIAVISCIGQSPYEYCSRYFTTESYRLTYSESVHPIP 705

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520056|ref|XP_004167050.1| PREDICTED: uncharacterized LOC101204073 [Cucumis sativus]

 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 129/523 (24%), Positives = 238/523 (45%), Gaps = 31/523 (5%)

Query: 166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
           GQ F DV  FR AI+  AI   F+L I+++       +C++  C W+I+A ++ N   F 
Sbjct: 9   GQEFPDVKAFRNAIKEAAIAQHFELRIIKSDLIRYFAKCAEEGCPWRIRAVKLPNSPIFT 68

Query: 226 VKEFVAQHKCTRRHQ--QFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEA 283
           ++     H C +  Q    Q    WI +    R +   N +  DI  +I   YG+     
Sbjct: 69  IRSLQGTHTCGQNAQNGHHQASIDWIVSFIEERLRNNINYKPKDILHDIHKQYGITIPYK 128

Query: 284 KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFV 343
           +   A +R    +    E+GY +L  + +++++ N  ++  + T     G    F+R+FV
Sbjct: 129 QAWRAKERGLATIFGSSEEGYGLLPSYCEQIKKANPGSVAEVFTT----GSDNHFQRLFV 184

Query: 344 CWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSW 403
            +  + Y F N C  ++ + G ++ + Y   +L A + D + G+ P+AF  V  E+ +SW
Sbjct: 185 SFYASIYGFLNGCFPVIGLGGIELKSKYLGTLLSATSYDADGGMFPVAFGVVDAENEESW 244

Query: 404 VFFIKNINNALRLE--HGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFP 461
           ++F+  ++NAL++   +   L  + DG NGI  A+    P + +  C   +   + K F 
Sbjct: 245 LWFLSELHNALKMNAWNKFHLTFLSDGQNGILDALRRKFPNSSHALCMRYLSENIGKEFK 304

Query: 462 TAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWALFTIPKWVKCICV 521
            + +    W A  + +  +F + M  I   S E   W+ Q     WAL         +  
Sbjct: 305 NSRLVSLVWKAAYAKTTIAFKERMSDIEEISPEAAKWIQQFP-PHWAL---------VYF 354

Query: 522 TLSITDKLRNYLHQYLEMSIASRYVAI--------ARLTAELFERRRMEVWNWYREKVTP 573
             +    L + L ++ +  + +R + I        ++L AE FE RR    +W+   +TP
Sbjct: 355 EGTRYGHLSSNLEEFTKWILDARELPIIQVIERIHSKLMAE-FEERRARSTSWF-SFLTP 412

Query: 574 TVREVIKDRTIDGQRFVLVEENGPRLK-LTDTRSLLFDLNMEAQSCSCGLWQISGIPCAH 632
           +  + I +       + +++ +    + L+  RS +  +N+  + C C  WQ+ GIPC+H
Sbjct: 413 SAEKRIVEAIKLASSYQVLQSDEVEFEVLSADRSYI--VNIGKRCCLCRDWQLYGIPCSH 470

Query: 633 ACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAWK 675
           A   I     +V  +++   +V  +   Y   + P P K  WK
Sbjct: 471 AVAAIASCRKDVHAFMEKCFTVSGYREAYEKSVHPIPRKLEWK 513

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147865779|emb|CAN81145.1| hypothetical protein VITISV_020810 [Vitis vinifera]

 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 232/515 (45%), Gaps = 26/515 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N  H V+ +C    C W+I A R+   +   +
Sbjct: 202 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 261

Query: 227 KEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAK 284
           K+    H C        ++    W+  I   + K+ PN +  DI D+I+  YG+  + ++
Sbjct: 262 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 321

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 344
              A + A+  L   +++ Y+ L  F ++++  N  +    ETK     E   F R+F+ 
Sbjct: 322 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETK-----EDSSFHRLFIS 376

Query: 345 WERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWV 404
           +      F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W 
Sbjct: 377 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 436

Query: 405 FFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAP 464
           +F+  + +A+       +  + D   G+  ++ E      Y   CL+  T+ + +     
Sbjct: 437 WFLLELKSAVST--ARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKGQ 493

Query: 465 VEHF--------FWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPK 514
             H         F++A  ++   +F +  + I   S E ++W++Q++   W  A F   +
Sbjct: 494 FSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGAR 553

Query: 515 WVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPT 574
           +     +  +      N++ +  ++ I      +     EL  +RR++   W   K+TP+
Sbjct: 554 YSH---MASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWIT-KLTPS 609

Query: 575 VREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHAC 634
             E +   T   +   ++  +G   ++      + D++     CSC  WQ+SG+PC HA 
Sbjct: 610 KEEKLLKDTSTARSLQVLLSHGSTFEVRGESIDIVDIDH--WDCSCKDWQLSGLPCCHAI 667

Query: 635 KGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFP 669
              + I  N  +Y     +V+++   YA  + P P
Sbjct: 668 AVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 702

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432189|ref|XP_002268620.1| PREDICTED: uncharacterized protein LOC100247698 [Vitis vinifera]

 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 121/515 (23%), Positives = 232/515 (45%), Gaps = 26/515 (5%)

Query: 167 QRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIV 226
           QRF   + FR+A+  ++I  GF     +N  H V+ +C    C W+I A R+   +   +
Sbjct: 184 QRFNSFNEFREALHKYSIAHGFAYKYKKNDSHRVTVKCKSQGCPWRIYASRLSTTQLICI 243

Query: 227 KEFVAQHKCTRR--HQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGVVCHEAK 284
           K+    H C        ++    W+  I   + K+ PN +  DI D+I+  YG+  + ++
Sbjct: 244 KKMHTTHTCEGAIVKAGYRATRGWVGTIIKEKLKVSPNYKPKDIADDIKREYGIQLNYSQ 303

Query: 285 LLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVC 344
              A + A+  L   +++ Y+ L  F ++++  N  +    ETK     E   F R+F+ 
Sbjct: 304 AWRAKEIAREQLQGSYKEAYSQLPFFCEKIKETNPGSFATFETK-----EDSSFHRLFIS 358

Query: 345 WERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWV 404
           +      F+  CR LL +D   +N+ Y  ++L A A DG++G+ P+AF  V  E  D+W 
Sbjct: 359 FHAAISGFQQGCRPLLFLDSTPLNSKYQGMLLTATAADGDDGVFPVAFAVVDAETDDNWS 418

Query: 405 FFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTAP 464
           +F+  + +A+       +  + D   G+  ++ E      Y   CL+  T+ + +     
Sbjct: 419 WFLLELKSAVST--ARPITFVADFQKGLKKSLAEIFDNG-YHSYCLRYLTEKLNKDLKGQ 475

Query: 465 VEH--------FFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSW--ALFTIPK 514
             H         F++A  ++   +F +  + I   S E ++W++Q++   W  A F   +
Sbjct: 476 FSHEARRFMINDFYAAAYASRLETFQRCTENIKGISPEAYNWVIQSEPDHWSNAFFGGAR 535

Query: 515 WVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNWYREKVTPT 574
           +     +  +      N++ +  ++ I      +     EL  +RR++   W   K+TP+
Sbjct: 536 YSH---MASNFGQLFYNWVSEANDLPITQMVDVLRGKMMELIYKRRVDSSQWI-TKLTPS 591

Query: 575 VREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDLNMEAQSCSCGLWQISGIPCAHAC 634
             E +   T   +   ++  +G   ++      + D++     CSC  WQ+SG+PC HA 
Sbjct: 592 KEEKLLKDTSTARSLQVLLSHGSTFEVRGESIDIVDIDH--WDCSCKDWQLSGLPCCHAI 649

Query: 635 KGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFP 669
              + I  N  +Y     +V+++   YA  + P P
Sbjct: 650 AVFEWIGRNPYDYCSRYFTVESYRLTYAESIHPVP 684

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	702
TAIR|locus:2014230	719	AT1G64260 "AT1G64260" [Arabido	0.715	0.698	0.201	1.4e-23
TAIR|locus:2197122	785	AT1G49920 "AT1G49920" [Arabido	0.475	0.425	0.247	2.9e-17
TAIR|locus:1006230722	750	AT1G64255 [Arabidopsis thalian	0.474	0.444	0.222	4.2e-16

TAIR|locus:2014230 AT1G64260 "AT1G64260" [Arabidopsis thaliana (taxid:3702)]

 Score = 303 (111.7 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 107/531 (20%), Positives = 221/531 (41%)

Query:   159 HKMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRV 218
             H M L  G  F+D    +KA++ + IR      + E      ++EC   +C W ++A R+
Sbjct:   183 HDMHL--GLCFKDRDELKKAVDWWCIRRRRNCIVRETEKEMYTFECVRWKCKWSLRAARM 240

Query:   219 VNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRW-KLQPNLRTVDIRDEIEATYG 277
                    + ++   H C+  H+   D     +A  + R  ++QP L   +++   +   G
Sbjct:   241 EEHGLVEITKYTGPHTCS--HEYPNDFESEFAADEIERVVRIQPTLSIAELKKWWKEKTG 298

Query:   278 VVCHEAKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVE 336
                  +K+        K + G D +  + ++ +    +   +S N +L++ +   +   +
Sbjct:   299 YELQTSKMRDGKLEVIKRVFG-DEDQSFRVMPKL---ISAFHSSNGLLVDWQYDLFPNPD 354

Query:   337 --RFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCE 394
                F+ +F  + ++   F+ HCR L+ VD   +N  Y   +++A+ +D  N   P+AF  
Sbjct:   355 FASFRGVFWSFSQSIEGFQ-HCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAV 413

Query:   395 VQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEE--FL---PKAVYRQCC 449
              +    DSW +F   I    ++   + LC++      I   V E   L   P A ++ C 
Sbjct:   414 TKEVSTDSWRWFFTKIRE--KVTQRKDLCLISSPLRDIVAVVNEPGSLWQEPWAHHKFCL 471

Query:   450 LKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWAL 509
               + +Q +  F    +E     A  +     F+ YM+ I  ++ E   WL Q     WAL
Sbjct:   472 NHLRSQFLGVFRDYNLESLVEQAGSTNQKEEFDSYMNDIKEKNPEAWKWLDQIPRHKWAL 531

Query:   510 FTIPKWVKCICVTL---SITDKLRNYLHQYLEMSIASRYVAIARLTAELFERRRMEVWNW 566
                   ++   + +   ++    R +   Y  +++    + +       F++    +++ 
Sbjct:   532 -AHDSGLRYGIIEIDREALFAVCRGF--PYCTVAMTGGVMLMFDELRSSFDKSLSSIYSS 588

Query:   567 YREKV--TPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLL-FDLNMEAQSCSCGLW 623
                 V  T    + +++   D   +V+ +      K++++     + + +   +C+C  +
Sbjct:   589 LNRGVVYTEPFMDKLEEFMTDSIPYVITQLERDSFKVSESSEKEEWIVQLNVSTCTCRKF 648

Query:   624 QISGIPCAHACKGIQLIMGNVEEYVDNMMSVQNFCSMYAPGMMPFPEKHAW 674
             Q    PC HA    + +  N  +YVD   +V+ +C  YA    P P+  AW
Sbjct:   649 QSYKFPCLHALAVFEKLKINPLQYVDECYTVEQYCKTYAATFSPVPDVAAW 699

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2197122 AT1G49920 "AT1G49920" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 90/364 (24%), Positives = 152/364 (41%)

Query:   166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFI 225
             G  F+D++  +KA++  +I+   K  + E        EC    C W I A R      F 
Sbjct:   183 GLCFKDLAEMKKAVDWCSIKRRQKCLLRETEKDVYVVECERWHCKWSICASRREEDGLFE 242

Query:   226 VKEFVAQHKCTRRHQQFQDRPKWISAIYLHRW-KLQPNLRTVDIRDEIEATYG-----VV 279
             + E    H C   H    D         + R  ++QP L T ++    E  +G     VV
Sbjct:   243 ITECSGPHDCYPEH--LNDFDAECIPFQIERVVRVQPTLSTAELDKWWEKKFGFALDQVV 300

Query:   280 --CHEAKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLETK----RHEY 332
               C E  +  A  +A K   G D +  + ++ +    M  ++S N +L++ +     H+ 
Sbjct:   301 EHCSEGLVEDAKVKAIKRFFG-DWDQSFRLIPKL---MSVLHSSNGLLVDWQYDSLTHD- 355

Query:   333 GEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAF 392
              E   F+ +F  + ++   F+ HCR L+ VD   +   Y   +++A+A D  N   P+AF
Sbjct:   356 PEHASFRGLFWAFSQSIQGFQ-HCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAF 414

Query:   393 CEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEE-----FLPKAVYRQ 447
                +   +DSW +F+  I    ++   +G+C++   D  I   + E       P A +R 
Sbjct:   415 AVTKEVSVDSWRWFLTRIRE--KVTQRQGICLISSPDPDILAVINEPGSQWKEPWAYHRF 472

Query:   448 CCLKIFTQMVKRFPTAPVE-HFFWSACRSTSATS-FNKYMDLIHNESEECHDWLLQTDWS 505
             C   + +++    P      HF      S+S    F+ YM  I   + E   WL Q    
Sbjct:   473 CLYHLCSKLCSVSPGFDYNMHFLVDEAGSSSQKEEFDSYMKEIKERNPEAWKWLDQFPPH 532

Query:   506 SWAL 509
              WAL
Sbjct:   533 QWAL 536

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:1006230722 AT1G64255 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 4.2e-16, Sum P(2) = 4.2e-16
 Identities = 79/355 (22%), Positives = 146/355 (41%)

Query:   166 GQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVV-NGRTF 224
             G  F+D    +KA++  +++   K  + E       +EC   +C W + A R+  +G   
Sbjct:   195 GLCFKDGDELKKAVDWCSLKAQQKCVVRETAKDEYIFECIRWKCKWSLGAARMKKHGLVE 254

Query:   225 IVKEFVAQHKCTRRHQQF-QDRPKWISAIYLHRW-KLQPNLRTVDIRDEIEATYGVVCHE 282
             I+K +   H C   H    +D         + R  +  P     +++   +   G     
Sbjct:   255 IIK-YTGPHTC---HPIVPEDFKSEFETDEIERAVRYMPTQTISELKKWWKKKIGYELET 310

Query:   283 AKLLCAAKRA-KHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVE--RFK 339
             + +  A ++A K + G D +  +     F   M  + S N +L++ K   +       F 
Sbjct:   311 SDVRLAKEKAIKRVFG-DWDQSF---EDFPKLMSALCSSNGLLVDWKYDLFPNPNFASFC 366

Query:   340 RMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVED 399
              +F  + ++   F+ HCR L+ VD   +N  Y   +++A+ +D  N   P+AF   +   
Sbjct:   367 GVFWAFPQSIEGFQ-HCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEVS 425

Query:   400 LDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEF-----LPKAVYRQCCLKIFT 454
              D W +F+  I    ++   +GLC++      I   V E       P A +R      ++
Sbjct:   426 TDIWRWFLTGIRE--KVTQRKGLCLISSPHPDIIAVVNESGSQWQEPWAYHRFSLNHFYS 483

Query:   455 QMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQTDWSSWAL 509
             Q  + FP+  +      A  ++    F  YM+ I  ++ E   WL Q   + WAL
Sbjct:   484 QFSRVFPSFCLGARIRRAGSTSQKDEFVSYMNDIKEKNPEARKWLDQFPQNRWAL 538

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pm.C_LG_IX000390 hypothetical protein (589 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	702
pfam10551	88	pfam10551, MULE, MULE transposase domain	4e-09
pfam03108	67	pfam03108, DBD_Tnp_Mut, MuDR family transposase	8e-06
smart00575	28	smart00575, ZnF_PMZ, plant mutator transposase zin	9e-05
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	0.003

>gnl|CDD|220806 pfam10551, MULE, MULE transposase domain

 Score = 53.9 bits (130), Expect = 4e-09
 Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 2/77 (2%)

Query: 372 NSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNG 431
            +    A  +D +    P+AF  V  E  +SW +F++ +  AL       L I+ DGD G
Sbjct: 5   TNKYKGAVGVDHHGQGFPLAFALVSDESEESWTWFLEGLKKALGGRP--PLTIISDGDKG 62

Query: 432 IDYAVEEFLPKAVYRQC 448
           +  A++E  P A +R C
Sbjct: 63  LKKAIKEVFPNARHRLC 79

This domain was identified by Babu and colleagues. Length = 88

>gnl|CDD|190526 pfam03108, DBD_Tnp_Mut, MuDR family transposase

 Score = 43.7 bits (104), Expect = 8e-06
 Identities = 17/64 (26%), Positives = 35/64 (54%)

Query: 163 LYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGR 222
           L  GQ F+    F+KA+  +AI++ F+  + ++       +C D  C W+++A ++ +  
Sbjct: 4   LEVGQVFKSKEEFKKAVRKYAIKNRFEFKVKKSDKTRYRAKCKDEGCPWRVRASKLKDSD 63

Query: 223 TFIV 226
           TF +
Sbjct: 64  TFQI 67

This region is found in plant proteins that are presumed to be the transposases for Mutator transposable elements. These transposons contain two ORFs. The molecular function of this region is unknown. Length = 67

>gnl|CDD|128845 smart00575, ZnF_PMZ, plant mutator transposase zinc finger

 Score = 39.5 bits (93), Expect = 9e-05
 Identities = 11/18 (61%), Positives = 15/18 (83%)

Query: 616 QSCSCGLWQISGIPCAHA 633
           ++CSC  +Q+SGIPC HA
Sbjct: 1   KTCSCRKFQLSGIPCRHA 18

Length = 28

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 604 TRSLLFDLNMEAQSCSCGLWQISGIPCAHA 633
              L  D  ++A SCSC  +Q+ GIPC HA
Sbjct: 2   RVQLDLDDLVKA-SCSCPAFQLYGIPCKHA 30

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	702
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.85
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.82
PF03108	67	DBD_Tnp_Mut: MuDR family transposase; InterPro: IP	99.63
COG3328	379	Transposase and inactivated derivatives [DNA repli	99.48
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	98.84
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	98.7
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	98.4
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.95
PF13610	140	DDE_Tnp_IS240: DDE domain	96.12
PF10532	114	Plant_all_beta: Plant specific N-all beta domain;	96.09
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	95.47
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	93.77
PHA02517	277	putative transposase OrfB; Reviewed	92.71
PF04684	496	BAF1_ABF1: BAF1 / ABF1 chromatin reorganising fact	91.38
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	90.46
PRK14702	262	insertion element IS2 transposase InsD; Provisiona	89.16
COG3316	215	Transposase and inactivated derivatives [DNA repli	86.96
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	85.78
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	84.22
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	82.31

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=5.7e-74  Score=661.01  Aligned_cols=466  Identities=14%  Similarity=0.198  Sum_probs=381.7

Q ss_pred             CcccccccEeCCHHHHHHHHHHHHHHcCceEEEeeecC-------eeEEEEeec--------------------------
Q 044407          160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRG-------HAVSYECSD--------------------------  206 (702)
Q Consensus       160 ~~~~~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~-------~r~~~~C~~--------------------------  206 (702)
                      +..+.+||+|.|.+|++++|+.||...||.+|+.++.+       ...+++|++                          
T Consensus        71 ~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~~~  150 (846)
T PLN03097         71 NLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPENG  150 (846)
T ss_pred             CccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcccc
Confidence            45579999999999999999999999999999865442       123567764                          


Q ss_pred             --------CCCccEEEEEEEeCceeEEEeEecCccccccccccccchhhHHHHHHhhhhccCCCCCHHHHHHHHHHHhC-
Q 044407          207 --------LRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYG-  277 (702)
Q Consensus       207 --------~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~~~~r~~s~~~ia~~~~~~i~~~~~~~~~~I~~~l~~~~g-  277 (702)
                              .||+++|.+.+. ..+.|.|+.+..+|||++...... +                 ...+.+...+....+ 
T Consensus       151 ~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv~eHNH~L~p~~~~-~-----------------~~~r~~~~~~~~~~~~  211 (846)
T PLN03097        151 TGRRSCAKTDCKASMHVKRR-PDGKWVIHSFVKEHNHELLPAQAV-S-----------------EQTRKMYAAMARQFAE  211 (846)
T ss_pred             cccccccCCCCceEEEEEEc-CCCeEEEEEEecCCCCCCCCcccc-c-----------------hhhhhhHHHHHhhhhc
Confidence                    379999999774 557899999999999998754110 0                 001111111111111 


Q ss_pred             ---cccCHH----HHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEEEEEEeehhhHH
Q 044407          278 ---VVCHEA----KLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFKRMFVCWERTSY  350 (702)
Q Consensus       278 ---~~is~~----~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~~~F~~~~~~~~  350 (702)
                         +.....    ...+.|.  ++..    ..+.+.|++||++++.+||+|+|.+++     |++++++++||+++.++.
T Consensus       212 ~~~v~~~~~d~~~~~~~~r~--~~~~----~gD~~~ll~yf~~~q~~nP~Ffy~~ql-----De~~~l~niFWaD~~sr~  280 (846)
T PLN03097        212 YKNVVGLKNDSKSSFDKGRN--LGLE----AGDTKILLDFFTQMQNMNSNFFYAVDL-----GEDQRLKNLFWVDAKSRH  280 (846)
T ss_pred             cccccccchhhcchhhHHHh--hhcc----cchHHHHHHHHHHHHhhCCCceEEEEE-----ccCCCeeeEEeccHHHHH
Confidence               000000    0111111  1111    234578999999999999999999999     999999999999999999


Q ss_pred             HHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCch
Q 044407          351 AFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDN  430 (702)
Q Consensus       351 ~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~  430 (702)
                      +|. +|+|||.+|+||++|+|++||+.++|+|+|+++++|||||+.+|+.++|.|||++|+++|  .+.+|.+||||++.
T Consensus       281 ~Y~-~FGDvV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM--~gk~P~tIiTDqd~  357 (846)
T PLN03097        281 DYG-NFSDVVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAM--GGQAPKVIITDQDK  357 (846)
T ss_pred             HHH-hcCCEEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHh--CCCCCceEEecCCH
Confidence            997 799999999999999999999999999999999999999999999999999999999999  68999999999999


Q ss_pred             HHHHHHHHhcccccchhhHHHHHHHHhhhCCC-----chhHHHHHHHhc-cccHHHHHHHHHHHHh-hChhhhHHhccC-
Q 044407          431 GIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT-----APVEHFFWSACR-STSATSFNKYMDLIHN-ESEECHDWLLQT-  502 (702)
Q Consensus       431 ~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-----~~~~~~~~~~~~-a~t~~~Fe~~~~~l~~-~~~~~~~yL~~~-  502 (702)
                      +|.+||++|||++.|++|+|||++|+.+++..     ..+...|+.|++ +.++++|+..|..|.+ ++...++||..+ 
T Consensus       358 am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~~~~~f~~~f~~cv~~s~t~eEFE~~W~~mi~ky~L~~n~WL~~LY  437 (846)
T PLN03097        358 AMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIKQHENFMAKFEKCIYRSWTEEEFGKRWWKILDRFELKEDEWMQSLY  437 (846)
T ss_pred             HHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhhhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            99999999999999999999999999998863     478889999886 5799999999999976 688999999998 


Q ss_pred             -CccceeeeecCCCccccccCCChhhhHHHHHhh--cccccHHHHHHHHHHHHHHHHHHHHHH----------------H
Q 044407          503 -DWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ--YLEMSIASRYVAIARLTAELFERRRME----------------V  563 (702)
Q Consensus       503 -~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~--~r~lpi~~~~e~i~~kl~~~~~~r~~~----------------~  563 (702)
                       .|++|+++|+++.|+.|+.||+++||+|+.|++  .+..++..|++.+...+..+.++..+.                .
T Consensus       438 ~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~yv~~~tsL~~Fv~qye~~l~~~~ekE~~aD~~s~~~~P~l~t~~pi  517 (846)
T PLN03097        438 EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKYVHKKTTVQEFVKQYETILQDRYEEEAKADSDTWNKQPALKSPSPL  517 (846)
T ss_pred             HhHhhhhHHHhcccccCCcccccccccHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCcccccccHH
Confidence             899999999999999999999999999999998  577889999988866655444333221                1


Q ss_pred             hhhccCCCChhHHHHHHHhhccCceeEEEecC--C--CeEEEEe---CCeeeEecc--CCCceeecCccccCCccccchh
Q 044407          564 WNWYREKVTPTVREVIKDRTIDGQRFVLVEEN--G--PRLKLTD---TRSLLFDLN--MEAQSCSCGLWQISGIPCAHAC  634 (702)
Q Consensus       564 ~~~~~~~~tp~~~k~lq~~~~~a~~~~V~~~~--~--~~~~V~~---~~~~~V~~~--l~~~tCsC~~fe~~GiPC~Hal  634 (702)
                      .++++.+|||.+|++||+++..+..|.+...+  +  .+|.|.+   ...|.|.++  ....+|+|++|+..||||+|||
T Consensus       518 EkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~~~~~v~CsC~kFE~~GILCrHaL  597 (846)
T PLN03097        518 EKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQTKLEVSCICRLFEYKGYLCRHAL  597 (846)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEecCCCeEEeeccCeecCccchhhHH
Confidence            22333499999999999999999988886642  2  3788887   456888653  5688999999999999999999


Q ss_pred             HHHHHhcCC--chhhccccccHHHHH
Q 044407          635 KGIQLIMGN--VEEYVDNMMSVQNFC  658 (702)
Q Consensus       635 av~~~~~~~--p~~yV~~~y~~~~~~  658 (702)
                      +||...++.  |+.||.+|||+++-.
T Consensus       598 kVL~~~~v~~IP~~YILkRWTKdAK~  623 (846)
T PLN03097        598 VVLQMCQLSAIPSQYILKRWTKDAKS  623 (846)
T ss_pred             HHHhhcCcccCchhhhhhhchhhhhh
Confidence            999999986  889999999888764

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.85  E-value=2.6e-21  Score=168.92  Aligned_cols=90  Identities=28%  Similarity=0.484  Sum_probs=85.9

Q ss_pred             ceeeecccCceeEE---eeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHHHhc
Q 044407          364 GWKINNPYNSVMLV---AAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFL  440 (702)
Q Consensus       364 ~T~~~~~y~~~ll~---~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vf  440 (702)
                      |||++|+| ++++.   ++|+|++|+.+|+||+++.+|+.++|.|||+.+++.++  .. |.+||||+++|+.+||+++|
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~--~~-p~~ii~D~~~~~~~Ai~~vf   76 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMP--QK-PKVIISDFDKALINAIKEVF   76 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhccc--cC-ceeeeccccHHHHHHHHHHC
Confidence            79999999 98886   99999999999999999999999999999999999994  45 99999999999999999999


Q ss_pred             ccccchhhHHHHHHHHh
Q 044407          441 PKAVYRQCCLKIFTQMV  457 (702)
Q Consensus       441 P~a~h~~C~~Hi~~N~~  457 (702)
                      |++.|++|.||+.+|++
T Consensus        77 P~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   77 PDARHQLCLFHILRNIK   93 (93)
T ss_pred             CCceEehhHHHHHHhhC
Confidence            99999999999999984

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.82  E-value=7.7e-21  Score=207.54  Aligned_cols=224  Identities=15%  Similarity=0.249  Sum_probs=185.5

Q ss_pred             CCCCCHHHHHHHHHHHhC-cccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccE
Q 044407          260 QPNLRTVDIRDEIEATYG-VVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERF  338 (702)
Q Consensus       260 ~~~~~~~~I~~~l~~~~g-~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f  338 (702)
                      -.|++.++|.+.++.-+| ..+|.+++.|..+.+.+.+           ..|    +...                    
T Consensus       112 ~~G~Str~i~~~l~~l~g~~~~S~s~vSri~~~~~~~~-----------~~w----~~R~--------------------  156 (381)
T PF00872_consen  112 LKGVSTRDIEEALEELYGEVAVSKSTVSRITKQLDEEV-----------EAW----RNRP--------------------  156 (381)
T ss_pred             ccccccccccchhhhhhcccccCchhhhhhhhhhhhhH-----------HHH----hhhc--------------------
Confidence            368999999999999999 8899999887765543221           111    1110                    


Q ss_pred             EEEEEeehhhHHHHHhcC-CcEEEEeceeeecccC-----ceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHH
Q 044407          339 KRMFVCWERTSYAFKNHC-RRLLAVDGWKINNPYN-----SVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINN  412 (702)
Q Consensus       339 ~~~F~~~~~~~~~f~~~~-~~vi~iD~T~~~~~y~-----~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~  412 (702)
                                   . ... -++|++||+|.+.+.+     ..+++++|+|.+|+..+||+.+...|+.++|.-||+.|++
T Consensus       157 -------------L-~~~~y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es~~~W~~~l~~L~~  222 (381)
T PF00872_consen  157 -------------L-ESEPYPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRESAASWREFLQDLKE  222 (381)
T ss_pred             -------------c-ccccccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCccCEeeecchhhhh
Confidence                         0 123 4799999999987754     4689999999999999999999999999999999999999


Q ss_pred             HhcccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCCc---hhHHHHHHHhccccHHHHHHHHHHHH
Q 044407          413 ALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLIH  489 (702)
Q Consensus       413 ~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~a~t~~~Fe~~~~~l~  489 (702)
                      ++   ...|..||+|+++||.+||.++||++.++.|.+|+++|+.++++.+   .+...++.+..+.+.+++...++.+.
T Consensus       223 RG---l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~k~~~~v~~~Lk~I~~a~~~e~a~~~l~~f~  299 (381)
T PF00872_consen  223 RG---LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPKKDRKEVKADLKAIYQAPDKEEAREALEEFA  299 (381)
T ss_pred             cc---ccccceeeccccccccccccccccchhhhhheechhhhhccccccccchhhhhhccccccccccchhhhhhhhcc
Confidence            98   4568899999999999999999999999999999999999999754   67788888888888888888888876


Q ss_pred             h----hChhhhHHhccCCccceeeeecCCCccccccCCChhhhHHHHHhh
Q 044407          490 N----ESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ  535 (702)
Q Consensus       490 ~----~~~~~~~yL~~~~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~  535 (702)
                      +    .+|.+.+++.+...+.|+..-|+...+--+.|||.+||+|+.||+
T Consensus       300 ~~~~~kyp~~~~~l~~~~~~~~tf~~fP~~~~~~i~TTN~iEsln~~irr  349 (381)
T PF00872_consen  300 EKWEKKYPKAAKSLEENWDELLTFLDFPPEHRRSIRTTNAIESLNKEIRR  349 (381)
T ss_pred             cccccccchhhhhhhhccccccceeeecchhccccchhhhccccccchhh
Confidence            5    378888999887777777665666545567899999999999997

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF03108 DBD_Tnp_Mut: MuDR family transposase; InterPro: IPR004332 The plant MuDR transposase domain is present in plant proteins that are presumed to be the transposases for Mutator transposable elements [, ]

Probab=99.63  E-value=7.9e-16  Score=125.58  Aligned_cols=67  Identities=25%  Similarity=0.571  Sum_probs=64.8

Q ss_pred             CcccccccEeCCHHHHHHHHHHHHHHcCceEEEeeecCeeEEEEeecCCCccEEEEEEEeCceeEEE
Q 044407          160 KMILYHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRVVNGRTFIV  226 (702)
Q Consensus       160 ~~~~~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~~gCpwrv~a~~~~~~~~~~I  226 (702)
                      ||.|.+||+|+|++||+.||..||+.++|++++.+|+++|++++|...||||+|+|++.++++.|+|
T Consensus         1 n~~l~~G~~F~~~~e~k~av~~yai~~~~~~~v~ksd~~r~~~~C~~~~C~Wrv~as~~~~~~~~~I   67 (67)
T PF03108_consen    1 NPELEVGQTFPSKEEFKEAVREYAIKNGFEFKVKKSDKKRYRAKCKDKGCPWRVRASKRKRSDTFQI   67 (67)
T ss_pred             CCccccCCEECCHHHHHHHHHHHHHhcCcEEEEeccCCEEEEEEEcCCCCCEEEEEEEcCCCCEEEC
Confidence            5779999999999999999999999999999999999999999999999999999999999999986

The function of these proteins is unknown. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=99.48  E-value=8.7e-13  Score=141.70  Aligned_cols=222  Identities=14%  Similarity=0.161  Sum_probs=167.6

Q ss_pred             CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEE
Q 044407          260 QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFK  339 (702)
Q Consensus       260 ~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~  339 (702)
                      ..+++++++.+.+++.++..++...+.+.-....+               .+.+++.+-+                    
T Consensus        98 ~~gv~Tr~i~~~~~~~~~~~~s~~~iS~~~~~~~e---------------~v~~~~~r~l--------------------  142 (379)
T COG3328          98 AKGVTTREIEALLEELYGHKVSPSVISVVTDRLDE---------------KVKAWQNRPL--------------------  142 (379)
T ss_pred             HcCCcHHHHHHHHHHhhCcccCHHHhhhHHHHHHH---------------HHHHHHhccc--------------------
Confidence            46899999999999999887777766555443332               2233322211                    


Q ss_pred             EEEEeehhhHHHHHhcCCcEEEEeceeeecc--cCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhccc
Q 044407          340 RMFVCWERTSYAFKNHCRRLLAVDGWKINNP--YNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLE  417 (702)
Q Consensus       340 ~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~--y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~  417 (702)
                                     +..+++++||+|++-+  -+..+++|+|++.+|+-.++|+.+-..|+ ..|.-||..|+..+   
T Consensus       143 ---------------~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~w~~~l~~l~~rg---  203 (379)
T COG3328         143 ---------------GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KFWLSFLLDLKNRG---  203 (379)
T ss_pred             ---------------cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hhHHHHHHHHHhcc---
Confidence                           2557999999999988  45689999999999999999999999999 99999999999987   


Q ss_pred             CCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCCc---hhHHHHHHHhccccHHHHHHHHHHHHh----
Q 044407          418 HGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPTA---PVEHFFWSACRSTSATSFNKYMDLIHN----  490 (702)
Q Consensus       418 ~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~~---~~~~~~~~~~~a~t~~~Fe~~~~~l~~----  490 (702)
                      ......+++|+.+|+.+||..+||.+.++.|..|+.+|+..+...+   .+...+..+..+.+.++-...|..+..    
T Consensus       204 l~~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~~k~~d~i~~~~~~I~~a~~~e~~~~~~~~~~~~w~~  283 (379)
T COG3328         204 LSDVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVPRKDQDAVLSDLRSIYIAPDAEEALLALLAFSELWGK  283 (379)
T ss_pred             ccceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhhhhhhHHHHhhhhhhhccCCcHHHHHHHHHHHHhhhh
Confidence            3445667779999999999999999999999999999999988766   334444555556666666665555443    


Q ss_pred             hChhhhHHhccCCccceeeeecCCCccccccCCChhhhHHHHHhh
Q 044407          491 ESEECHDWLLQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQ  535 (702)
Q Consensus       491 ~~~~~~~yL~~~~~e~Wa~a~~~~~~~~g~~Ttn~~ES~N~~lk~  535 (702)
                      ..|....|+.+...+.|.-.-|+...+--+.|||.+|++|+.++.
T Consensus       284 ~yP~i~~~~~~~~~~~~~F~~fp~~~r~~i~ttN~IE~~n~~ir~  328 (379)
T COG3328         284 RYPAILKSWRNALEELLPFFAFPSEIRKIIYTTNAIESLNKLIRR  328 (379)
T ss_pred             hcchHHHHHHHHHHHhcccccCcHHHHhHhhcchHHHHHHHHHHH
Confidence            467777777776555554333333323457899999999998775

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=98.84  E-value=1.1e-09  Score=72.69  Aligned_cols=28  Identities=43%  Similarity=0.772  Sum_probs=25.6

Q ss_pred             ceeecCccccCCccccchhHHHHHhcCC
Q 044407          616 QSCSCGLWQISGIPCAHACKGIQLIMGN  643 (702)
Q Consensus       616 ~tCsC~~fe~~GiPC~Halav~~~~~~~  643 (702)
                      .+|||++||..||||+|+|+|+...+++
T Consensus         1 ~~CsC~~~~~~gipC~H~i~v~~~~~~~   28 (28)
T smart00575        1 KTCSCRKFQLSGIPCRHALAAAIHIGLS   28 (28)
T ss_pred             CcccCCCcccCCccHHHHHHHHHHhCCC
Confidence            4799999999999999999999998763

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=98.70  E-value=7.4e-08  Score=84.04  Aligned_cols=69  Identities=13%  Similarity=0.346  Sum_probs=65.2

Q ss_pred             eCCHHHHHHHHHHHHHHcCceEEEeeecCeeEEEEeec------------------------------------------
Q 044407          169 FRDVSHFRKAIEVFAIRDGFKLCIMENRGHAVSYECSD------------------------------------------  206 (702)
Q Consensus       169 F~s~~e~~~ai~~yAi~~gf~~~~~kS~~~r~~~~C~~------------------------------------------  206 (702)
                      |.|++|++.+|+.++...|+++.+.+|+.+.+.+.|..                                          
T Consensus         1 F~~k~~ikpwlq~~~~~~Gi~iVIerSd~~ki~FkCk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~k~t~srk   80 (111)
T PF08731_consen    1 FDDKDEIKPWLQKIFYPQGIGIVIERSDKKKIVFKCKNGKRYRHKKKKKGQAQAQQKESTSGNKNKSSKKKKKKRTKSRK   80 (111)
T ss_pred             CCchHHHHHHHHHHhhhcCceEEEEecCCceEEEEEecCCCcccccccccccccccccccccccccccccccCCcccccc
Confidence            88999999999999999999999999999999999973                                          


Q ss_pred             CCCccEEEEEEEeCceeEEEeEecCcccccc
Q 044407          207 LRCDWKIKAGRVVNGRTFIVKEFVAQHKCTR  237 (702)
Q Consensus       207 ~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~  237 (702)
                      ..|||+|+|......+.|.|..+++.|+|++
T Consensus        81 ~~CPFriRA~yS~k~k~W~lvvvnn~HnH~l  111 (111)
T PF08731_consen   81 NTCPFRIRANYSKKNKKWTLVVVNNEHNHPL  111 (111)
T ss_pred             cCCCeEEEEEEEecCCeEEEEEecCCcCCCC
Confidence            2699999999999999999999999999974

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=98.40  E-value=4.7e-07  Score=78.43  Aligned_cols=61  Identities=25%  Similarity=0.402  Sum_probs=53.5

Q ss_pred             HHHHHHHHHcCceEEEeeecC-------eeEEEEeec----------------------CCCccEEEEEEEeCceeEEEe
Q 044407          177 KAIEVFAIRDGFKLCIMENRG-------HAVSYECSD----------------------LRCDWKIKAGRVVNGRTFIVK  227 (702)
Q Consensus       177 ~ai~~yAi~~gf~~~~~kS~~-------~r~~~~C~~----------------------~gCpwrv~a~~~~~~~~~~I~  227 (702)
                      ++|+.||...||.++..+|..       .++.++|..                      .||||+|.+.... ++.|.|.
T Consensus         1 ~fy~~yA~~~GF~vr~~~s~~~~~~~~~~~~~~~C~r~G~~~~~~~~~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~   79 (91)
T PF03101_consen    1 DFYNSYARRHGFSVRKSSSRKSKKNGEIKRVTFVCSRGGKYKSKKKNEEKRRRNRPSKKTGCKARINVKRRK-DGKWRVT   79 (91)
T ss_pred             CHHHHhcCcCCeEEEEeeeEeCCCCceEEEEEEEECCcccccccccccccccccccccccCCCEEEEEEEcc-CCEEEEE
Confidence            478999999999999987654       378899985                      4899999999877 8999999


Q ss_pred             EecCccccccc
Q 044407          228 EFVAQHKCTRR  238 (702)
Q Consensus       228 ~~~~~HnC~~~  238 (702)
                      .+..+|||++.
T Consensus        80 ~~~~~HNH~L~   90 (91)
T PF03101_consen   80 SFVLEHNHPLC   90 (91)
T ss_pred             ECcCCcCCCCC
Confidence            99999999874

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.95  E-value=6.7e-06  Score=59.61  Aligned_cols=29  Identities=34%  Similarity=0.707  Sum_probs=26.4

Q ss_pred             CCCceeecCccccCCccccchhHHHHHhc
Q 044407          613 MEAQSCSCGLWQISGIPCAHACKGIQLIM  641 (702)
Q Consensus       613 l~~~tCsC~~fe~~GiPC~Halav~~~~~  641 (702)
                      +...+|||..|+..|.||+|++|++...+
T Consensus        12 ~~~~~CsC~~~~~~~~~CkHi~av~~~~~   40 (40)
T PF04434_consen   12 IEQASCSCPYFQFRGGPCKHIVAVLLALN   40 (40)
T ss_pred             ccccEeeCCCccccCCcchhHHHHHHhhC
Confidence            67899999999999999999999998753

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=96.12  E-value=0.0022  Score=60.21  Aligned_cols=80  Identities=20%  Similarity=0.151  Sum_probs=67.9

Q ss_pred             CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHH
Q 044407          357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAV  436 (702)
Q Consensus       357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai  436 (702)
                      ++.+.+|-||.+.+ +-..+....+|.+++  +|++-|-..-+...=..||..+++..   ...|..|+||+.++...|+
T Consensus         1 ~~~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~---~~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    1 GDSWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRH---RGEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             CCEEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceee---ccccceeecccCCccchhh
Confidence            46789999998764 335667888999999  88999999999999899998888777   2788999999999999999


Q ss_pred             HHhccc
Q 044407          437 EEFLPK  442 (702)
Q Consensus       437 ~~vfP~  442 (702)
                      ++++|.
T Consensus        75 ~~l~~~   80 (140)
T PF13610_consen   75 KELNPE   80 (140)
T ss_pred             hhcccc
Confidence            999875

>PF10532 Plant_all_beta: Plant specific N-all beta domain; InterPro: IPR018290 This entry represents a domain with an all-beta structure that is found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=96.09  E-value=0.00099  Score=58.49  Aligned_cols=63  Identities=19%  Similarity=0.078  Sum_probs=56.3

Q ss_pred             cccCcceeeeccccccccccCCCCCCchhhHHHHhhhccchhhhhhccCCC--ccchhhhhccccc
Q 044407           29 NKTSPEYIRTRSCGSRLRGNSANDTDRPEQLLKAKCRRIRRKIARELFPSN--SHSNEQCNRHSRT   92 (702)
Q Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~   92 (702)
                      -|..++|+. .+|+.++++.|.||.|+..||+.+++.++|+-|-++.++..  .|+.||+.|+.+.
T Consensus        10 ~klklsY~p-~~~~~~re~yI~DDEDv~~Ylt~~d~e~~r~VLhVE~~~~~~~~er~eQis~v~~~   74 (114)
T PF10532_consen   10 VKLKLSYNP-FSVKPKRETYIVDDEDVLVYLTSVDEEGRRSVLHVEVVNDLEENERLEQISRVERR   74 (114)
T ss_pred             eEEEEEEee-eccCCccceeEecCCcEEEEEEEcccccceeeEEEEEecCccccceeeeeeecccc
Confidence            478899997 67999999999999999999999999999999999999977  4566999988654

This domain is found associated with the WRKY domain [].

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=95.47  E-value=0.14  Score=58.04  Aligned_cols=131  Identities=17%  Similarity=0.236  Sum_probs=93.8

Q ss_pred             cCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCC-chhHHHHHHHhcc
Q 044407          397 VEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT-APVEHFFWSACRS  475 (702)
Q Consensus       397 ~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~-~~~~~~~~~~~~a  475 (702)
                      ..+.+-|.-+.+.+.+...+....-+++.+|+...|.+++. .+|++.|.+..+|+.+.+.+.++. ..+.+.++++.+.
T Consensus       235 ~~~~~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~~-~~~~~~~~LD~FHl~k~i~~~~~~~~~~~~~~~~al~~  313 (470)
T PF06782_consen  235 ESAEEFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGAE-FFPKAEYFLDRFHLNKKIKQALSHDPELKEKIRKALKK  313 (470)
T ss_pred             cchHHHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHHH-hhcCceEEecHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            55678899999999888853333357889999999988776 999999999999999999988864 4677777778888


Q ss_pred             ccHHHHHHHHHHHHhh--Ch-------hhhHHhccCCccceee--eecCCCccccccCCChhhhHHHHHhh
Q 044407          476 TSATSFNKYMDLIHNE--SE-------ECHDWLLQTDWSSWAL--FTIPKWVKCICVTLSITDKLRNYLHQ  535 (702)
Q Consensus       476 ~t~~~Fe~~~~~l~~~--~~-------~~~~yL~~~~~e~Wa~--a~~~~~~~~g~~Ttn~~ES~N~~lk~  535 (702)
                      .....++..++.+...  .+       ++..||.++    |..  .|-.   +-|.......|+.+..+..
T Consensus       314 ~d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n----~~~i~~y~~---~~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  314 GDKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNN----WDGIKPYRE---REGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             cCHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHC----HHHhhhhhh---ccCCCccchhhhhhhHHHH
Confidence            8888888888887653  21       345566554    321  1211   1233445567888877644

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=93.77  E-value=0.093  Score=54.07  Aligned_cols=93  Identities=14%  Similarity=0.170  Sum_probs=67.4

Q ss_pred             EEEeceeeecccCceeEEeeeccC--CCCeEEEEEEEeecCChhhHHHHHHHH-HHHhcccCCCcEEEEccCchHHHHHH
Q 044407          360 LAVDGWKINNPYNSVMLVAAALDG--NNGILPIAFCEVQVEDLDSWVFFIKNI-NNALRLEHGEGLCIMGDGDNGIDYAV  436 (702)
Q Consensus       360 i~iD~T~~~~~y~~~ll~~vg~d~--~~~~~plafalv~~E~~es~~wfl~~l-~~~~~~~~~~p~~iitD~~~~l~~Ai  436 (702)
                      |+||-+........  +..+-+|.  +++.   -++++++-+.++..-||..+ -...   .....+|++|...+..+|+
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~---il~i~~~r~~~~l~~~~~~~~~~~~---~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGR---ILDILPGRDKETLKDFFRSLYPEEE---RKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCce---EEEEcCCccHHHHHHHHHHhCcccc---ccceEEEEcCCCccccccc
Confidence            46776666543332  33334444  3332   23588999999998888876 3222   3456789999999999999


Q ss_pred             HHhcccccchhhHHHHHHHHhhhC
Q 044407          437 EEFLPKAVYRQCCLKIFTQMVKRF  460 (702)
Q Consensus       437 ~~vfP~a~h~~C~~Hi~~N~~~~~  460 (702)
                      ++.||+|.+..--||+++++.+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            999999999999999999886543

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PHA02517 putative transposase OrfB; Reviewed

Probab=92.71  E-value=3.1  Score=43.58  Aligned_cols=151  Identities=13%  Similarity=0.074  Sum_probs=82.7

Q ss_pred             HHHHHHhhhhcc-CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEe
Q 044407          248 WISAIYLHRWKL-QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLE  326 (702)
Q Consensus       248 ~ia~~~~~~i~~-~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~  326 (702)
                      .+.+.+.+.+.. .+.+..+.|...|++. |+.++..+++|..+.+     |-...           ......... .-.
T Consensus        30 ~l~~~I~~i~~~~~~~~G~r~I~~~L~~~-g~~vs~~tV~Rim~~~-----gl~~~-----------~~~k~~~~~-~~~   91 (277)
T PHA02517         30 WLKSEILRVYDENHQVYGVRKVWRQLNRE-GIRVARCTVGRLMKEL-----GLAGV-----------LRGKKVRTT-ISR   91 (277)
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHhc-CcccCHHHHHHHHHHc-----CCceE-----------ecCCCcCCC-CCC
Confidence            345555555544 5788999999988755 9999999998765432     21000           000000000 000


Q ss_pred             eccccccccccEEEEEEeehhhHHHHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHH
Q 044407          327 TKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFF  406 (702)
Q Consensus       327 ~~~~~~d~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wf  406 (702)
                      .   .....+.+.+-|-+         ..-..++..|.||....- +..++++-+|...+ +++|+.+...++.+...-.
T Consensus        92 ~---~~~~~n~~~r~f~~---------~~pn~~w~~D~t~~~~~~-g~~yl~~iiD~~sr-~i~~~~~~~~~~~~~~~~~  157 (277)
T PHA02517         92 K---AVAAPDRVNRQFVA---------TRPNQLWVADFTYVSTWQ-GWVYVAFIIDVFAR-RIVGWRVSSSMDTDFVLDA  157 (277)
T ss_pred             C---CCCCCCcccCCCCC---------CCCCCeEEeceeEEEeCC-CCEEEEEecccCCC-eeeecccCCCCChHHHHHH
Confidence            0   00001111111111         124568999999986543 55677777776655 5678888888887765555


Q ss_pred             HHHHHHHhcccCCCcEEEEccCchHH
Q 044407          407 IKNINNALRLEHGEGLCIMGDGDNGI  432 (702)
Q Consensus       407 l~~l~~~~~~~~~~p~~iitD~~~~l  432 (702)
                      |+......  +...+..|.||+....
T Consensus       158 l~~a~~~~--~~~~~~i~~sD~G~~y  181 (277)
T PHA02517        158 LEQALWAR--GRPGGLIHHSDKGSQY  181 (277)
T ss_pred             HHHHHHhc--CCCcCcEeeccccccc
Confidence            54443333  1222356779988754

>PF04684 BAF1_ABF1: BAF1 / ABF1 chromatin reorganising factor; InterPro: IPR006774 ABF1 is a sequence-specific DNA binding protein involved in transcription activation, gene silencing and initiation of DNA replication

Probab=91.38  E-value=0.37  Score=52.62  Aligned_cols=57  Identities=12%  Similarity=0.325  Sum_probs=51.0

Q ss_pred             ccccEeCCHHHHHHHHHHHHHHcCceEEEeeecC-eeEEEEeecCCCccEEEEEEEeC
Q 044407          164 YHGQRFRDVSHFRKAIEVFAIRDGFKLCIMENRG-HAVSYECSDLRCDWKIKAGRVVN  220 (702)
Q Consensus       164 ~~G~~F~s~~e~~~ai~~yAi~~gf~~~~~kS~~-~r~~~~C~~~gCpwrv~a~~~~~  220 (702)
                      ..+..|++.++-+.+|.+|.+..++.+..+.|-+ ++++|.|.-..|||+|.++..+.
T Consensus        23 ~~~~~f~tl~~wy~v~ndyefq~rcpiilknsh~nkhftfachlk~c~fkillsy~g~   80 (496)
T PF04684_consen   23 AQARKFPTLEAWYNVINDYEFQSRCPIILKNSHRNKHFTFACHLKNCPFKILLSYCGN   80 (496)
T ss_pred             ccccCCCcHHHHHHHHhhhhhhhcCceeecccccccceEEEeeccCCCceeeeeeccc
Confidence            4578899999999999999999999999988864 78999999999999999986543

ABF1 is known to remodel chromatin, and it is proposed that it mediates its effects on transcription and gene expression by modifying local chromatin architecture []. These functions require a conserved stretch of 20 amino acids in the C-terminal region of ABF1 (amino acids 639 to 662 Saccharomyces cerevisiae (P14164 from SWISSPROT)) []. The N-terminal two thirds of the protein are necessary for DNA binding, and the N terminus (amino acids 9 to 91 in S. cerevisiae) is thought to contain a novel zinc-finger motif which may stabilise the protein structure [].; GO: 0003677 DNA binding, 0006338 chromatin remodeling, 0005634 nucleus

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=90.46  E-value=0.46  Score=37.63  Aligned_cols=40  Identities=15%  Similarity=0.341  Sum_probs=32.8

Q ss_pred             CeeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccc
Q 044407          197 GHAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCT  236 (702)
Q Consensus       197 ~~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~  236 (702)
                      -.|-.++|+..+||++-.+.+..++....++++.++|||+
T Consensus        20 ~pRsYYrCt~~~C~akK~Vqr~~~d~~~~~vtY~G~H~h~   59 (60)
T PF03106_consen   20 YPRSYYRCTHPGCPAKKQVQRSADDPNIVIVTYEGEHNHP   59 (60)
T ss_dssp             CEEEEEEEECTTEEEEEEEEEETTCCCEEEEEEES--SS-
T ss_pred             eeeEeeeccccChhheeeEEEecCCCCEEEEEEeeeeCCC
Confidence            3577799999999999999988877888899999999996

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>PRK14702 insertion element IS2 transposase InsD; Provisional

Probab=89.16  E-value=23  Score=36.85  Aligned_cols=147  Identities=8%  Similarity=-0.001  Sum_probs=86.4

Q ss_pred             hhHHHHHHhhhhccCCCCCHHHHHHHHHHH---hCc-ccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCc
Q 044407          246 PKWISAIYLHRWKLQPNLRTVDIRDEIEAT---YGV-VCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRN  321 (702)
Q Consensus       246 ~~~ia~~~~~~i~~~~~~~~~~I~~~l~~~---~g~-~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~  321 (702)
                      ...+...+.+....++.+..+.|...|+..   .|+ .++..+++|....+     |-.           ...+...+.+
T Consensus        10 ~~~l~~~I~~~~~~~~~yG~rri~~~L~~~~~~~g~~~v~~krV~rlmr~~-----gL~-----------~~~r~~~~~~   73 (262)
T PRK14702         10 DTDVLLRIHHVIGELPTYGYRRVWALLRRQAELDGMPAINAKRVYRLMRQN-----ALL-----------LERKPAVPPS   73 (262)
T ss_pred             hHHHHHHHHHHHHhCcccChHHHHHHHHhhhcccCccccCHHHHHHHHHHh-----CCc-----------cccCCCCCCC
Confidence            344555566655667889999999988875   377 48998888775432     100           0000000000


Q ss_pred             EEEEeeccccccccccEEEEEEeehhhHHHHHhcCCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeec-CCh
Q 044407          322 IVLLETKRHEYGEVERFKRMFVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQV-EDL  400 (702)
Q Consensus       322 ~~~v~~~~~~~d~~~~f~~~F~~~~~~~~~f~~~~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~-E~~  400 (702)
                      .   .      .....    |         ....-..++..|-||....-++.++.++-+|...+ .++||++... -+.
T Consensus        74 ~---~------~~~~~----~---------~~~~pn~~W~~DiT~~~~~~g~~~Yl~~viD~~sR-~ivg~~is~~~~~~  130 (262)
T PRK14702         74 K---R------AHTGR----V---------AVKESNQRWCSDGFEFCCDNGERLRVTFALDCCDR-EALHWAVTTGGFNS  130 (262)
T ss_pred             C---c------CCCCc----c---------ccCCCCCEEEeeeEEEEecCCcEEEEEEEEecccc-eeeeEEeccCcCCH
Confidence            0   0      00000    1         01124578999999987654556888888887776 6789999874 565


Q ss_pred             hhHHHHHHH-HHHHhcc-cCCCcEEEEccCchH
Q 044407          401 DSWVFFIKN-INNALRL-EHGEGLCIMGDGDNG  431 (702)
Q Consensus       401 es~~wfl~~-l~~~~~~-~~~~p~~iitD~~~~  431 (702)
                      +.-.-+|+. +....+. ....|..|.||+...
T Consensus       131 ~~v~~~l~~A~~~~~~~~~~~~~~iihSD~Gsq  163 (262)
T PRK14702        131 ETVQDVMLGAVERRFGNDLPSSPVEWLTDNGSC  163 (262)
T ss_pred             HHHHHHHHHHHHHHhcccCCCCCeEEEcCCCcc
Confidence            555555553 3333220 123578899999874

>COG3316 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=86.96  E-value=8.1  Score=38.69  Aligned_cols=85  Identities=15%  Similarity=0.086  Sum_probs=63.1

Q ss_pred             CCcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHHH
Q 044407          356 CRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYA  435 (702)
Q Consensus       356 ~~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~A  435 (702)
                      -++.+.+|-||.+.+-+. .+.-..+|.+|  .++.+-|...-+...=.-||..+++..    ..|.+|+||+.+....|
T Consensus        69 ~~~~w~vDEt~ikv~gkw-~ylyrAid~~g--~~Ld~~L~~rRn~~aAk~Fl~kllk~~----g~p~v~vtDka~s~~~A  141 (215)
T COG3316          69 AGDSWRVDETYIKVNGKW-HYLYRAIDADG--LTLDVWLSKRRNALAAKAFLKKLLKKH----GEPRVFVTDKAPSYTAA  141 (215)
T ss_pred             cccceeeeeeEEeeccEe-eehhhhhccCC--CeEEEEEEcccCcHHHHHHHHHHHHhc----CCCceEEecCccchHHH
Confidence            456788999998764222 23344556664  467788888888888888888877776    57889999999999999


Q ss_pred             HHHhcccccchh
Q 044407          436 VEEFLPKAVYRQ  447 (702)
Q Consensus       436 i~~vfP~a~h~~  447 (702)
                      +.++-+.+.|+-
T Consensus       142 ~~~l~~~~ehr~  153 (215)
T COG3316         142 LRKLGSEVEHRT  153 (215)
T ss_pred             HHhcCcchheec
Confidence            999988555543

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=85.78  E-value=3.6  Score=36.57  Aligned_cols=77  Identities=10%  Similarity=-0.039  Sum_probs=55.7

Q ss_pred             CCcEEEEeceeeec-ccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHHH
Q 044407          356 CRRLLAVDGWKINN-PYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDY  434 (702)
Q Consensus       356 ~~~vi~iD~T~~~~-~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~~  434 (702)
                      -...+.+|.++... ..++..+..+.+|..-+ +.+++.+-..++.+.+..+|.......  ....|.+|+||+..+..+
T Consensus         5 p~~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    5 PGERWQIDFTPMPIPDKGGRVYLLVFIDDYSR-FIYAFPVSSKETAEAALRALKRAIEKR--GGRPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TTTEEEEEEEEETGGCTT-CEEEEEEEETTTT-EEEEEEESSSSHHHHHHHHHHHHHHHH--S-SE-SEEEEESCHHHHS
T ss_pred             CCCEEEEeeEEEecCCCCccEEEEEEEECCCC-cEEEEEeeccccccccccccccccccc--ccccceeccccccccccc
Confidence            45689999997763 55668888888887666 455777777778888888888666666  233389999999998764


Q ss_pred             H
Q 044407          435 A  435 (702)
Q Consensus       435 A  435 (702)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            3

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=84.22  E-value=2.2  Score=44.52  Aligned_cols=134  Identities=11%  Similarity=0.123  Sum_probs=84.7

Q ss_pred             CCCCCHHHHHHHHHHHhCcccCHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHhhCCCcEEEEeeccccccccccEE
Q 044407          260 QPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHEDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVERFK  339 (702)
Q Consensus       260 ~~~~~~~~I~~~l~~~~g~~is~~~~~rak~~~~~~~~g~~~~~y~~L~~~~~~l~~~Npg~~~~v~~~~~~~d~~~~f~  339 (702)
                      .-.++...+.+.+... |+.+|..++.+.-.++.+.+           ....+.+.+.                      
T Consensus        18 ~~~lp~~r~~~~~~~~-G~~is~~ti~~~~~~~~~~l-----------~~~~~~l~~~----------------------   63 (271)
T PF03050_consen   18 VYHLPLYRIQQMLEDL-GITISRGTIANWIKRVAEAL-----------KPLYEALKEE----------------------   63 (271)
T ss_pred             cCCCCHHHHhhhhhcc-ceeeccchhHhHhhhhhhhh-----------hhhhhhhhhh----------------------
Confidence            3466777777777777 99999999887765553322           1111111111                      


Q ss_pred             EEEEeehhhHHHHHhcCCcEEEEeceeee----cccC-ceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHh
Q 044407          340 RMFVCWERTSYAFKNHCRRLLAVDGWKIN----NPYN-SVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNAL  414 (702)
Q Consensus       340 ~~F~~~~~~~~~f~~~~~~vi~iD~T~~~----~~y~-~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~  414 (702)
                                  .  --.+|+.+|-|..+    ++.. +-+.++++-+      .+.|.+.++-+.+...-+|..     
T Consensus        64 ------------~--~~~~~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-----  118 (271)
T PF03050_consen   64 ------------L--RSSPVVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-----  118 (271)
T ss_pred             ------------c--cccceeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-----
Confidence                        1  14578888888887    4333 3334444333      556666666666665555433     


Q ss_pred             cccCCCcEEEEccCchHHHHHHHHhcccccchhhHHHHHHHHhhhCCC
Q 044407          415 RLEHGEGLCIMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQMVKRFPT  462 (702)
Q Consensus       415 ~~~~~~p~~iitD~~~~l~~Ai~~vfP~a~h~~C~~Hi~~N~~~~~~~  462 (702)
                           -.-+++||+..+-..     +..+.|+.|+.|+.+.+.+-...
T Consensus       119 -----~~GilvsD~y~~Y~~-----~~~~~hq~C~AH~~R~~~~~~~~  156 (271)
T PF03050_consen  119 -----FSGILVSDGYSAYNK-----LAGITHQLCWAHLRRDFQDAAES  156 (271)
T ss_pred             -----cceeeeccccccccc-----ccccccccccccccccccccccc
Confidence                 224899999987544     22889999999999999776553

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=82.31  E-value=2.1  Score=33.39  Aligned_cols=46  Identities=15%  Similarity=0.286  Sum_probs=25.0

Q ss_pred             cCceEEEeeecCeeEEEEeecC---CCccEEEEEEEeCceeEEEeEecCcccc
Q 044407          186 DGFKLCIMENRGHAVSYECSDL---RCDWKIKAGRVVNGRTFIVKEFVAQHKC  235 (702)
Q Consensus       186 ~gf~~~~~kS~~~r~~~~C~~~---gCpwrv~a~~~~~~~~~~I~~~~~~HnC  235 (702)
                      .|+.|...+.........|...   +|+++|...    .+...|.....+|||
T Consensus        14 ~Gy~y~~~~~~~~~~~WrC~~~~~~~C~a~~~~~----~~~~~~~~~~~~HnH   62 (62)
T PF04500_consen   14 DGYRYYFNKRNDGKTYWRCSRRRSHGCRARLITD----AGDGRVVRTNGEHNH   62 (62)
T ss_dssp             TTEEEEEEEE-SS-EEEEEGGGTTS----EEEEE------TTEEEE-S---SS
T ss_pred             CCeEEECcCCCCCcEEEEeCCCCCCCCeEEEEEE----CCCCEEEECCCccCC
Confidence            3777777776678889999874   899999987    223345556688987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	702
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.4 bits (135), Expect = 2e-08
 Identities = 49/412 (11%), Positives = 109/412 (26%), Gaps = 118/412 (28%)

Query: 259 LQPNLRTVDIRDEIEATYGVVCHEAKLLCAAKRAKHILGMDHED-------------GYA 305
               +   D +D  +    ++        + +   HI+                      
Sbjct: 26  EDAFVDNFDCKDVQDMPKSIL--------SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77

Query: 306 ILNQFKDEMERIN---------------SRNIVLLETKRHE-YGEVERFKRMFVCWERTS 349
           ++ +F +E+ RIN               S    +   +R   Y + + F +  V   +  
Sbjct: 78  MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 350 YAFKNHCRRL-----LAVDGWKINNPYNSVM-------LVAAALDGNNGILPIAFCEVQV 397
              +     L     + +DG          +       +       +  +      ++  
Sbjct: 138 LKLRQALLELRPAKNVLIDG----------VLGSGKTWVALDVCL-SYKVQCKMDFKI-- 184

Query: 398 EDLDSWVFFIKNINNALRLEHGEGLC--IMGDGDNGIDYAVEEFLPKAVYRQCCLKIFTQ 455
                W+      +    LE  + L   I  +  +  D++    L     +    ++   
Sbjct: 185 ----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240

Query: 456 MVKRFPTA-----------PVEHFFWSACRSTSATSFNKYMDLIHNE-----SEECHDWL 499
             K +                  F  S C+    T F +  D +        S + H   
Sbjct: 241 --KPYENCLLVLLNVQNAKAWNAFNLS-CKILLTTRFKQVTDFLSAATTTHISLDHHSMT 297

Query: 500 LQTDWSSWALFTIPKWVKCICVTLSITDKLRNYLHQYLEMSIASRYVAIARLTAELFERR 559
           L  D    +L    K++ C    L       N       +SI      IA    +     
Sbjct: 298 LTPD-EVKSLLL--KYLDCRPQDLPREVLTTNPRR----LSI------IAESIRDGLAT- 343

Query: 560 RMEVWNWYREKVTPTVREVIKDRTIDGQRFVLVEENGPRLKLTDTRSLLFDL 611
               W+ ++      +  +I+  +++             L+  + R +   L
Sbjct: 344 ----WDNWKHVNCDKLTTIIE-SSLN------------VLEPAEYRKMFDRL 378

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 2e-07
 Identities = 73/465 (15%), Positives = 132/465 (28%), Gaps = 142/465 (30%)

Query: 113 QEENNDEEYQIEGYSSENDKGYMYRLTDDETPCHVGEWFKFEDPPRHKMI------LYHG 166
           + E          Y  + D+  +Y         +V          R +        L   
Sbjct: 99  KTEQRQPSMMTRMYIEQRDR--LYNDNQVFAKYNV---------SRLQPYLKLRQALLEL 147

Query: 167 QRFRDVS-H----FRK---AIEVFAIRDGFKLCIMENRGHAVSYECSDLRCDWKIKAGRV 218
           +  ++V         K   A++V         C M+ +              W +     
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDV--CLSYKVQCKMDFKIF------------W-LNLKNC 192

Query: 219 VNGRTFIVKEFVAQHKCTRRHQQFQDRPKWISAIYLHRWKLQPNLRTVDIRDEIEATYGV 278
            +  T +      Q    +    +  R    S I          LR   I+ E+      
Sbjct: 193 NSPETVLEM---LQKLLYQIDPNWTSRSDHSSNIK---------LRIHSIQAELR----- 235

Query: 279 VCHEAKLLCAAKRAKHILGMDH-EDGYAILNQFKDEMERINSRNIVLLETKRHEYGEVER 337
                +LL +      +L + + ++     N F      ++ +  +LL T         R
Sbjct: 236 -----RLLKSKPYENCLLVLLNVQNA-KAWNAFN-----LSCK--ILLTT---------R 273

Query: 338 FKRM--FVCWERTSYAFKNHCRRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFC-- 393
           FK++  F+    T++   +H    L         P     L+   LD     LP      
Sbjct: 274 FKQVTDFLSAATTTHISLDHHSMTL--------TPDEVKSLLLKYLDCRPQDLPREVLTT 325

Query: 394 ---------EVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGIDYAVEEFLPKAV 444
                    E   + L +W  + K++N   +L       +               L  A 
Sbjct: 326 NPRRLSIIAESIRDGLATWDNW-KHVNCD-KLTTIIESSL-------------NVLEPAE 370

Query: 445 YRQC--CLKIFTQMVKRFPTAPVEHFFWSACRSTSATSFNKYMDLIHNESEECHDWLLQT 502
           YR+    L +F       PT  +    W     +        ++ +H  S      L++ 
Sbjct: 371 YRKMFDRLSVFPPSAH-IPTILLS-LIWFDVIKSDVMVV---VNKLHKYS------LVEK 419

Query: 503 DWSSWALFTIPKWVKCICVTLSITDKLRN--YLHQYLEMSIASRY 545
                +  +IP       + L +  KL N   LH+    SI   Y
Sbjct: 420 QPKE-STISIPS------IYLELKVKLENEYALHR----SIVDHY 453

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	702
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	88.93
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	88.81

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=88.93  E-value=0.47  Score=38.31  Aligned_cols=41  Identities=15%  Similarity=0.327  Sum_probs=34.8

Q ss_pred             eeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccccc
Q 044407          198 HAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRR  238 (702)
Q Consensus       198 ~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~  238 (702)
                      -|-.++|...|||++-.+.+..++....++++.++|||+..
T Consensus        37 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   77 (78)
T 1wj2_A           37 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   77 (78)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             eeEEeecCcCCCCcEeeEEEEcCCCCEEEEEEeeEcCCCCC
Confidence            45679999999999999988776677778899999999864

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=88.81  E-value=0.45  Score=38.29  Aligned_cols=41  Identities=17%  Similarity=0.353  Sum_probs=35.2

Q ss_pred             eeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccccc
Q 044407          198 HAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRR  238 (702)
Q Consensus       198 ~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~  238 (702)
                      -|-.++|...|||++-.+.+..++....++++.++|||+..
T Consensus        34 PRsYYrCt~~gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p   74 (76)
T 2ayd_A           34 PRSYYRCSSPGCPVKKHVERSSHDTKLLITTYEGKHDHDMP   74 (76)
T ss_dssp             CEEEEEECSTTCCCEEEEEECSSSTTEEEEEEESCCSSCCC
T ss_pred             ceeEeEcCCCCCCceeeEEEECCCCCEEEEEEccCcCCCCC
Confidence            46669999999999999988777777888999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	702
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	92.57
d1cxqa_	147	Retroviral integrase, catalytic domain {Rous sarco	80.66

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=92.57  E-value=0.066  Score=40.52  Aligned_cols=41  Identities=15%  Similarity=0.327  Sum_probs=35.4

Q ss_pred             eeEEEEeecCCCccEEEEEEEeCceeEEEeEecCccccccc
Q 044407          198 HAVSYECSDLRCDWKIKAGRVVNGRTFIVKEFVAQHKCTRR  238 (702)
Q Consensus       198 ~r~~~~C~~~gCpwrv~a~~~~~~~~~~I~~~~~~HnC~~~  238 (702)
                      -|..++|...||+++=.+-+..++....++++.++|||+..
T Consensus        30 pRsYYrCt~~~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~P   70 (71)
T d1wj2a_          30 PRSYYKCTTPGCGVRKHVERAATDPKAVVTTYEGKHNHDLP   70 (71)
T ss_dssp             CEEEEEEECSSCEEEEEEEEETTTTSEEEEEEESCCSSCCC
T ss_pred             ceEEEEccccCCCCcceEEEEcCCCCEEEEEEeeEeCCCCC
Confidence            46779999999999999988877777888899999999864

>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous sarcoma virus RSV [TaxId: 11886]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Rous sarcoma virus RSV [TaxId: 11886]

Probab=80.66  E-value=3.7  Score=34.71  Aligned_cols=70  Identities=10%  Similarity=-0.072  Sum_probs=43.5

Q ss_pred             CcEEEEeceeeecccCceeEEeeeccCCCCeEEEEEEEeecCChhhHHHHHHHHHHHhcccCCCcEEEEccCchHHH
Q 044407          357 RRLLAVDGWKINNPYNSVMLVAAALDGNNGILPIAFCEVQVEDLDSWVFFIKNINNALRLEHGEGLCIMGDGDNGID  433 (702)
Q Consensus       357 ~~vi~iD~T~~~~~y~~~ll~~vg~d~~~~~~plafalv~~E~~es~~wfl~~l~~~~~~~~~~p~~iitD~~~~l~  433 (702)
                      ..++.+|-|+.... ++..+..+.+|..-+ ++.++. +.+++...-...|..+....    +.|..|.||......
T Consensus         7 ~~~w~~D~~~~~~~-~~~~~l~v~vD~~Sr-~i~~~~-~~~~t~~~~~~~l~~~~~~~----g~p~~i~sDnG~~F~   76 (147)
T d1cxqa_           7 LQIWQTDFTLEPRM-APRSWLAVTVDTASS-AIVVTQ-HGRVTSVAAQHHWATAIAVL----GRPKAIKTDNGSCFT   76 (147)
T ss_dssp             CCEEEEEEEECGGG-TTSCEEEEEEETTTC-CEEEEE-ESSCCHHHHHHHHHHHHHHH----CCCSEEECCSCHHHH
T ss_pred             CCEEEEEEEEecCC-CCeEEEEEEEecccc-eecccc-cCccchHHHHHHHHHHHHHh----CCCeEEEeccccccc
Confidence            45788998887643 344344555665554 344444 55666665555555554444    357899999988654