Citrus Sinensis ID: 044417

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
TGYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHcHHHHHHHccEEHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccEEcccHEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
tgyrfplkqaatagslaftgDTIAQLIQRWRKQKASEqqhslsrseqlDEDVFWTALLDHDWLRAVRMTSYGFllygpgsyvWYQYldhcmpkqtaGNLMMKVLLNQIVLGPCVIAVCFAWnnlwqgtvselpnkyqkdalptllygfrfwiPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Flexible Loop (DISEMBL)
tgyrfplkqaatagslaftGDTIAQLIQRWRKQKASeqqhslsrseqldeDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Low Complexity Region (SEG)
TGYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Disordered region (IsUnstruct)
***********TAGSLAFTGDTIAQLIQRW*******************EDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYL******
Disordered Region (DISOPRED)
*GYRFPLKQAATAGSLAFTGDTIAQLIQRW*****************LDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMS*
Disordered Region (DISEMBL)
TGYRFPLKQAATAGSLAFTGDTIAQLIQ*******************LDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Disordered Region (DISPRO)
*GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQK***********EQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMS*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
oooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
TGYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	188	2.2.26 [Sep-21-2011]
Q5TZ51	177	Protein Mpv17 OS=Danio re	yes	no	0.797	0.847	0.316	1e-16
Q4P9K6	199	Protein SYM1 OS=Ustilago	N/A	no	0.835	0.788	0.297	4e-15
Q66GV0	177	Protein Mpv17 OS=Xenopus	N/A	no	0.824	0.875	0.291	2e-13
Q2KIY1	196	Peroxisomal membrane prot	yes	no	0.840	0.806	0.262	9e-13
Q5BK62	176	Protein Mpv17 OS=Rattus n	yes	no	0.803	0.857	0.284	4e-12
P19258	176	Protein Mpv17 OS=Mus musc	yes	no	0.797	0.852	0.293	7e-12
Q9NR77	195	Peroxisomal membrane prot	yes	no	0.835	0.805	0.284	7e-12
Q54FR4	185	PXMP2/4 family protein 4	yes	no	0.861	0.875	0.267	9e-12
Q7SCY7	172	Protein sym-1 OS=Neurospo	N/A	no	0.670	0.732	0.315	9e-12
Q07066	194	Peroxisomal membrane prot	no	no	0.819	0.793	0.271	1e-11

>sp|Q5TZ51|MPV17_DANRE Protein Mpv17 OS=Danio rerio GN=mpv17 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/177 (31%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 9   QAATAGSLAFTGDTIAQ-LIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVR 67
           Q  TAGSL   GD I+Q LI+R                           L +H+  R  +
Sbjct: 20  QIITAGSLVGVGDVISQQLIER-------------------------RGLANHNARRTAK 54

Query: 68  MTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQG 127
           M S GF   GP    WY+ LD  +   T    + K+L++Q+   PC +           G
Sbjct: 55  MMSIGFFFVGPVVGGWYKVLDKLVTGGTKSAALKKMLVDQVGFAPCFLGAFLGITGTLNG 114

Query: 128 -TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLS 183
            TV E   K Q+D    L+  +  W PV I NF+ IPL  R+A + + ++ WN YLS
Sbjct: 115 LTVEENVAKLQRDYTDALISNYYLWPPVQIANFYFIPLHHRLAVVQIVAVVWNSYLS 171

Involved in mitochondria homeostasis.
Danio rerio (taxid: 7955)

>sp|Q4P9K6|SYM1_USTMA Protein SYM1 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SYM1 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 85/185 (45%), Gaps = 28/185 (15%)

Query: 1   TGYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDH 60
           T   FP +Q  T G L  TGDTIAQ +   R  +                         H
Sbjct: 11  TSSTFP-RQCLTGGVLFATGDTIAQQLVEKRGSR-------------------------H 44

Query: 61  DWLRAVRMTSYGFLLYGPGSYVWY-QYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCF 119
           D  R  R++ YG  ++ P + +W+ + L+       A N+  KV L+Q +  P  +A+ F
Sbjct: 45  DLARTFRLSLYGGCVFSPLASIWFGRVLERVRFSSKAANIATKVALDQAIASPAFVALFF 104

Query: 120 AWNNLWQG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFW 178
               + +G +  +  NK   +  PTL   +  WIPV  LN  ++P   R+ F+++ SIFW
Sbjct: 105 GATTIMEGGSPDQAKNKIIHNWWPTLKTAWGLWIPVQTLNMALVPPSQRLLFVNVVSIFW 164

Query: 179 NFYLS 183
           N +LS
Sbjct: 165 NTFLS 169

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q66GV0|MPV17_XENLA Protein Mpv17 OS=Xenopus laevis GN=mpv17 PE=2 SV=2

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/182 (29%), Positives = 77/182 (42%), Gaps = 27/182 (14%)

Query: 9   QAATAGSLAFTGDTIAQ-LIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVR 67
           Q  TAGSL   GD I+Q L++R                           L  H   R V+
Sbjct: 20  QIVTAGSLVGVGDVISQQLLER-------------------------KGLKGHSIERTVK 54

Query: 68  MTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQG 127
           M   GF   GP    WY+ LD  +P       + K+LL+Q+   PC +    +  +   G
Sbjct: 55  MMGIGFCFVGPVVGGWYKILDRIIPGSGKPVALKKMLLDQVAFAPCFLGCFLSIASALNG 114

Query: 128 TVSE-LPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTM 186
              E +  K ++D    L+  +  W  V + NF+ IPL  R+A +   +I WN YLS   
Sbjct: 115 LSGEQIWGKLKRDYKDALITNYYIWPAVQVANFYFIPLYHRLAVVQFVAIIWNSYLSWKA 174

Query: 187 SK 188
           +K
Sbjct: 175 NK 176

Involved in mitochondria homeostasis.

Xenopus laevis (taxid: 8355)

>sp|Q2KIY1|PXMP2_BOVIN Peroxisomal membrane protein 2 OS=Bos taurus GN=PXMP2 PE=2 SV=3

 Score = 73.2 bits (178), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 21/179 (11%)

Query: 7   LKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAV 66
           L +AAT+G L+  G+ +AQLI++ +K++   Q+  +S                      +
Sbjct: 35  LTKAATSGILSALGNFLAQLIEKKQKKENCSQKLDVSGP--------------------L 74

Query: 67  RMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQ 126
           R   YGF   GP  + +Y  ++  +P +     + ++LL++++  P  +++ F   N  +
Sbjct: 75  RYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFLE 134

Query: 127 G-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
           G   +    K +    P L   +R W PV  +N   IP+Q RV F ++ ++FW  YL+S
Sbjct: 135 GQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLAS 193

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Bos taurus (taxid: 9913)

>sp|Q5BK62|MPV17_RAT Protein Mpv17 OS=Rattus norvegicus GN=Mpv17 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 50/176 (28%), Positives = 77/176 (43%), Gaps = 25/176 (14%)

Query: 9   QAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRM 68
           Q  TAGSL   GD I+Q +     ++   QQH   R+                    + M
Sbjct: 19  QVLTAGSLMGLGDIISQQL----VERRGLQQHQTGRT--------------------LTM 54

Query: 69  TSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGT 128
            S G    GP    WY+ LDH +P  T  N + K+LL+Q    PC +        +  G 
Sbjct: 55  ASLGCGFVGPVVGGWYRVLDHLIPGTTKVNALKKMLLDQGGFAPCFLGCFLPLVGVLNGM 114

Query: 129 VSELP-NKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLS 183
            ++    K ++D    L+  +  W  V + NF+++PL  R+A +   ++ WN YLS
Sbjct: 115 SAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAVVWNSYLS 170

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Rattus norvegicus (taxid: 10116)

>sp|P19258|MPV17_MOUSE Protein Mpv17 OS=Mus musculus GN=Mpv17 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 52/177 (29%), Positives = 78/177 (44%), Gaps = 27/177 (15%)

Query: 9   QAATAGSLAFTGDTIAQ-LIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVR 67
           Q  TAGSL   GD I+Q L++R        QQH   R+                    + 
Sbjct: 19  QVLTAGSLMGVGDMISQQLVER-----RGLQQHQAGRT--------------------LT 53

Query: 68  MTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQG 127
           M S G    GP    WY+ LDH +P  T  + + K+LL+Q    PC +        +  G
Sbjct: 54  MVSLGCGFVGPVVGGWYKVLDHLIPGTTKVHALKKMLLDQGGFAPCFLGCFLPLVGILNG 113

Query: 128 TVSELP-NKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLS 183
             ++    K ++D    L+  +  W  V + NF+++PL  R+A +   +I WN YLS
Sbjct: 114 MSAQDNWAKLKRDYPDALITNYYLWPAVQLANFYLVPLHYRLAVVQCVAIVWNSYLS 170

Involved in mitochondria homeostasis. May be involved in the metabolism of reactive oxygen species and control of oxidative phosphorylation and mitochondrial DNA (mtDNA) maintenance.

Mus musculus (taxid: 10090)

>sp|Q9NR77|PXMP2_HUMAN Peroxisomal membrane protein 2 OS=Homo sapiens GN=PXMP2 PE=1 SV=3

 Score = 70.1 bits (170), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 22/179 (12%)

Query: 7   LKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAV 66
           L +AAT+G L+  G+ +AQ+I++ RK+   E   SL     L                  
Sbjct: 35  LTKAATSGILSALGNFLAQMIEKKRKK---ENSRSLDVGGPL------------------ 73

Query: 67  RMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQ 126
           R   YGF   GP S+ +Y +++H +P +     + ++LL+++V  P  + + F   N  +
Sbjct: 74  RYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFLE 133

Query: 127 GT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
           G   S    K +    P L   +R W P+  +N   +PL+ RV F ++ ++FW  YL+S
Sbjct: 134 GKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYLAS 192

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Homo sapiens (taxid: 9606)

>sp|Q54FR4|PX24D_DICDI PXMP2/4 family protein 4 OS=Dictyostelium discoideum GN=DDB_G0290631 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 94/187 (50%), Gaps = 25/187 (13%)

Query: 3   YRFPL-KQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           +++P+  +A T+G L    D++ Q I+             LSR    D+D        +D
Sbjct: 20  HKYPVATKAVTSGFLYLISDSLVQGIE-------------LSR----DKDK------KYD 56

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
           + R++RM  +GF + GP  + W++YLD   PK++  +  +K+ ++Q+V  P    + F+ 
Sbjct: 57  FKRSMRMAVFGFAVTGPLFHYWFKYLDKHFPKKSYRHAFIKLTIDQVVCSPVFNFLFFSG 116

Query: 122 NNLWQG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNF 180
             + +G +  ++  K +KD L T +     W  ++ +NF  I    RV FM++ +I W  
Sbjct: 117 MGILEGKSKDDIVEKLKKDWLTTYVSDCVVWPFINFVNFAYISSIHRVTFMNVCNIGWGA 176

Query: 181 YLSSTMS 187
           +L+   S
Sbjct: 177 FLAKMNS 183

Dictyostelium discoideum (taxid: 44689)

>sp|Q7SCY7|SYM1_NEUCR Protein sym-1 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=sym-1 PE=3 SV=2

 Score = 69.7 bits (169), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 4/130 (3%)

Query: 56  ALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDH--CMPKQTAGNLMMKVLLNQIVLGPC 113
            L +HD  R  RM  YG  ++GP +  W+++L     +P  T   ++ +V  +Q +  P 
Sbjct: 40  GLSNHDLTRTGRMVLYGGAVFGPAATTWFRFLQKRVVVPGSTNKTILARVAADQGLFAPT 99

Query: 114 VIAVCFAWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSM 173
            I +      + +GT  ++  K QK+    L   +  W  V ++NF V+PL  RV F+++
Sbjct: 100 FIGIFLGSMAVLEGT--DVKEKLQKNYWEALSTNWMVWPFVQMVNFKVVPLDHRVLFVNV 157

Query: 174 GSIFWNFYLS 183
            SI WN YLS
Sbjct: 158 ISIGWNCYLS 167

May be involved in cellular response to stress. Required to maintain mitochondrial DNA (mtDNA) integrity and stability.

Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) (taxid: 367110)

>sp|Q07066|PXMP2_RAT Peroxisomal membrane protein 2 OS=Rattus norvegicus GN=Pxmp2 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 48/177 (27%), Positives = 87/177 (49%), Gaps = 23/177 (12%)

Query: 9   QAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRM 68
           +A ++G L+  G+ +AQ+I++  KQK        SRS ++                 +R 
Sbjct: 37  KAVSSGILSALGNLLAQMIEK--KQKKD------SRSLEVSG--------------LLRY 74

Query: 69  TSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQG- 127
             YG  + GP S+  Y ++++ +P +     + ++LL+++   P  + + F   NL +G 
Sbjct: 75  LVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLLEGK 134

Query: 128 TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
            +S    K +    P L   +R W P+  +N   +PLQ RV F +M ++FW  YL+S
Sbjct: 135 NISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

Seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the peroxisomal membrane.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
297827979	232	peroxisomal membrane 22 kDa family prote	0.968	0.784	0.743	9e-79
18406056	232	peroxisomal membrane-22-like protein [Ar	0.968	0.784	0.743	1e-78
356517494	217	PREDICTED: protein Mpv17-like [Glycine m	0.946	0.820	0.747	2e-74
224114233	231	predicted protein [Populus trichocarpa]	0.989	0.805	0.708	9e-74
225446697	225	PREDICTED: protein SYM1 [Vitis vinifera]	0.957	0.8	0.721	2e-73
357474433	219	Protein Mpv17 [Medicago truncatula] gi|3	0.952	0.817	0.711	4e-72
388494764	219	unknown [Medicago truncatula]	0.952	0.817	0.711	6e-72
255578689	240	Peroxisomal membrane protein, putative [	0.962	0.754	0.731	1e-68
356544998	217	PREDICTED: LOW QUALITY PROTEIN: protein	0.952	0.824	0.684	3e-67
242054303	241	hypothetical protein SORBIDRAFT_03g03365	0.941	0.734	0.695	6e-66

>gi|297827979|ref|XP_002881872.1| peroxisomal membrane 22 kDa family protein [Arabidopsis lyrata subsp. lyrata] gi|297327711|gb|EFH58131.1| peroxisomal membrane 22 kDa family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (762), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 158/187 (84%), Gaps = 5/187 (2%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GYRFPLKQA TAG+L FTGDTIAQL  RW+K+ A +Q      S +LDE   W    +HD
Sbjct: 51  GYRFPLKQAVTAGALTFTGDTIAQLSGRWKKRTALKQS-----SSELDEGELWNIFSEHD 105

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
           W+RA+RM+SYGFLLYGPGSY WYQ+LDH +PK TA NL++KVLLNQ++LGP VIAV FAW
Sbjct: 106 WIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIFAW 165

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NNLW G +SEL NKYQKDALPTLLYGFRFW+PVSILNFWV+PLQARVAFMSMGS+FWNFY
Sbjct: 166 NNLWLGKLSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQARVAFMSMGSVFWNFY 225

Query: 182 LSSTMSK 188
           LSSTMSK
Sbjct: 226 LSSTMSK 232

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18406056|ref|NP_565983.1| peroxisomal membrane-22-like protein [Arabidopsis thaliana] gi|15450882|gb|AAK96712.1| Unknown protein [Arabidopsis thaliana] gi|20197967|gb|AAD21742.2| expressed protein [Arabidopsis thaliana] gi|20259846|gb|AAM13270.1| unknown protein [Arabidopsis thaliana] gi|330255072|gb|AEC10166.1| peroxisomal membrane-22-like protein [Arabidopsis thaliana]

 Score =  297 bits (761), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/187 (74%), Positives = 158/187 (84%), Gaps = 5/187 (2%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GYRFPLKQA TAG+L FTGDTIAQL  RW+K+ A +Q      S +LDE   W    +HD
Sbjct: 51  GYRFPLKQAVTAGALTFTGDTIAQLSGRWKKRTALKQS-----SSELDEGELWNIFSEHD 105

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
           W+RA+RM+SYGFLLYGPGSY WYQ+LDH +PK TA NL++KVLLNQ++LGP VIAV FAW
Sbjct: 106 WIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIFAW 165

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NNLW G +SEL NKYQKDALPTLLYGFRFW+PVSILNFWV+PLQARVAFMSMGS+FWNFY
Sbjct: 166 NNLWLGKLSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQARVAFMSMGSVFWNFY 225

Query: 182 LSSTMSK 188
           LSSTMSK
Sbjct: 226 LSSTMSK 232

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517494|ref|XP_003527422.1| PREDICTED: protein Mpv17-like [Glycine max]

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 139/186 (74%), Positives = 154/186 (82%), Gaps = 8/186 (4%)

Query: 3   YRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDW 62
           YRFP+KQA TA SLA TGDTIAQL  RWRK K  E   S+S+ E       W  L DHDW
Sbjct: 40  YRFPVKQAVTAASLALTGDTIAQLSHRWRKAK--EGGGSVSQDE------LWRYLSDHDW 91

Query: 63  LRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWN 122
           LRA+RMTSYGFLLYGPGSY WYQ LDHC+PK T  NL++KV+LNQIVLGPCVIAV FAWN
Sbjct: 92  LRALRMTSYGFLLYGPGSYAWYQCLDHCLPKPTVQNLVLKVVLNQIVLGPCVIAVVFAWN 151

Query: 123 NLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYL 182
           NLW   +SELP KY++DALPTLLYGFRFWIPVS+LNFWV+PLQARVAFMSMGS+FWNFYL
Sbjct: 152 NLWLQKLSELPEKYRRDALPTLLYGFRFWIPVSVLNFWVVPLQARVAFMSMGSVFWNFYL 211

Query: 183 SSTMSK 188
           SSTM+K
Sbjct: 212 SSTMTK 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114233|ref|XP_002332407.1| predicted protein [Populus trichocarpa] gi|222832340|gb|EEE70817.1| predicted protein [Populus trichocarpa]

 Score =  281 bits (719), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 134/189 (70%), Positives = 155/189 (82%), Gaps = 3/189 (1%)

Query: 3   YRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQ---HSLSRSEQLDEDVFWTALLD 59
           Y FPLKQA TAG+LA TGDT+AQ+  RW+K K S++       S++   ++D     L D
Sbjct: 43  YWFPLKQAVTAGALALTGDTVAQVTDRWKKNKPSKRHSYDQDASQNSNDNQDFIGIFLSD 102

Query: 60  HDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCF 119
           HDWLRA+RMTSYGFLLYGPGSY WYQYLD C+PKQT  NLM+KVLLNQIVLGP VIAV F
Sbjct: 103 HDWLRALRMTSYGFLLYGPGSYAWYQYLDCCLPKQTVKNLMLKVLLNQIVLGPSVIAVVF 162

Query: 120 AWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWN 179
           AWNNLWQG +S+LP KYQ+DALPTLLYGFRFWIPVS+LNFW +P+QARVAFMS GSIFWN
Sbjct: 163 AWNNLWQGKLSQLPEKYQRDALPTLLYGFRFWIPVSVLNFWAVPIQARVAFMSTGSIFWN 222

Query: 180 FYLSSTMSK 188
           F LSST++K
Sbjct: 223 FCLSSTLNK 231

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446697|ref|XP_002277601.1| PREDICTED: protein SYM1 [Vitis vinifera] gi|302143471|emb|CBI22032.3| unnamed protein product [Vitis vinifera]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 135/187 (72%), Positives = 154/187 (82%), Gaps = 7/187 (3%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GYRFPLKQA TAGSLAF GDTIAQL +R+RK+ A      LS S    +D+ W    +HD
Sbjct: 46  GYRFPLKQALTAGSLAFAGDTIAQLSERYRKRNA------LSDSG-FSKDIMWMLCSNHD 98

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
           WLRA+RM SYGFLLYGPGSY WYQYLDH +PKQT  NL++KVLLNQIVLGP V+A+ FAW
Sbjct: 99  WLRALRMASYGFLLYGPGSYAWYQYLDHALPKQTVENLLLKVLLNQIVLGPSVVAIVFAW 158

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NN+W G  SELPNKYQKDA+PTL+ G++FWIPVS LNFWV+PLQARVAFMSMGSIFWNF 
Sbjct: 159 NNIWLGKFSELPNKYQKDAIPTLITGYKFWIPVSALNFWVVPLQARVAFMSMGSIFWNFC 218

Query: 182 LSSTMSK 188
           LS+TMSK
Sbjct: 219 LSATMSK 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357474433|ref|XP_003607501.1| Protein Mpv17 [Medicago truncatula] gi|355508556|gb|AES89698.1| Protein Mpv17 [Medicago truncatula]

 Score =  276 bits (705), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 133/187 (71%), Positives = 147/187 (78%), Gaps = 8/187 (4%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GY+FPLKQA TA SL  TGDTIAQL  RW K K S         E   +DV    L +HD
Sbjct: 41  GYQFPLKQALTAASLTLTGDTIAQLSNRWNKAKES--------GENASQDVLSKLLSEHD 92

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
            LRA+RMTSYGFL YGPGS+ WYQ LDHC+PK    NLM+KVLLNQ+VLGPCVIAV FAW
Sbjct: 93  LLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQVVLGPCVIAVIFAW 152

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NNLWQ  +SELP KY++DALPTLLYGFRFWIPVS+LNFWV+PL ARV FMSMGSIFWNFY
Sbjct: 153 NNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVGFMSMGSIFWNFY 212

Query: 182 LSSTMSK 188
           LSSTM+K
Sbjct: 213 LSSTMNK 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494764|gb|AFK35448.1| unknown [Medicago truncatula]

 Score =  275 bits (703), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 133/187 (71%), Positives = 147/187 (78%), Gaps = 8/187 (4%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GY+FPLKQA TA SL  TGDTIAQL  RW K K S         E   +DV    L +HD
Sbjct: 41  GYQFPLKQALTAASLTLTGDTIAQLSNRWNKAKES--------GENASQDVLSKLLSEHD 92

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
            LRA+RMTSYGFL YGPGS+ WYQ LDHC+PK    NLM+KVLLNQ+VLGPCVIAV FAW
Sbjct: 93  LLRALRMTSYGFLFYGPGSFAWYQLLDHCLPKPNVQNLMLKVLLNQVVLGPCVIAVVFAW 152

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NNLWQ  +SELP KY++DALPTLLYGFRFWIPVS+LNFWV+PL ARV FMSMGSIFWNFY
Sbjct: 153 NNLWQQKLSELPEKYKRDALPTLLYGFRFWIPVSVLNFWVVPLPARVDFMSMGSIFWNFY 212

Query: 182 LSSTMSK 188
           LSSTM+K
Sbjct: 213 LSSTMNK 219

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578689|ref|XP_002530204.1| Peroxisomal membrane protein, putative [Ricinus communis] gi|223530280|gb|EEF32178.1| Peroxisomal membrane protein, putative [Ricinus communis]

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 136/186 (73%), Positives = 154/186 (82%), Gaps = 5/186 (2%)

Query: 3   YRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDW 62
           Y FPLKQAATA SLA TGDTIAQL  R+   K   ++H+ +     D+D     LL+HDW
Sbjct: 60  YHFPLKQAATAASLALTGDTIAQLSHRFANNK---KKHTHTVPPSHDDDTI--ILLEHDW 114

Query: 63  LRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWN 122
           LRA+RMTSYGFL YGPGSY WYQYLDHC+PKQ+A NL++KVLLNQI+LGP VIAV FAWN
Sbjct: 115 LRALRMTSYGFLFYGPGSYAWYQYLDHCLPKQSAKNLILKVLLNQIILGPSVIAVVFAWN 174

Query: 123 NLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYL 182
           NLWQG ++ELP KY+KDALPTLLYGFRFWIPVS LNFWV+PLQ RVAFMSMGSIFWNF L
Sbjct: 175 NLWQGKLTELPAKYKKDALPTLLYGFRFWIPVSALNFWVVPLQTRVAFMSMGSIFWNFCL 234

Query: 183 SSTMSK 188
           SS+MSK
Sbjct: 235 SSSMSK 240

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544998|ref|XP_003540933.1| PREDICTED: LOW QUALITY PROTEIN: protein Mpv17-like [Glycine max]

 Score =  259 bits (662), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 128/187 (68%), Positives = 143/187 (76%), Gaps = 8/187 (4%)

Query: 2   GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
           GYRF  KQA TA SL  TGDTI QL   WRK K            +L  D  W  L + D
Sbjct: 39  GYRFLAKQAVTAASLTLTGDTIPQLSNHWRKAKEG--------GGRLLXDDLWRHLSELD 90

Query: 62  WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
           WL A+RMTSYGFLLYGPGSY WYQ LDH +PK T  NLM+KVLLNQIVLGPCVIAV FAW
Sbjct: 91  WLHALRMTSYGFLLYGPGSYAWYQCLDHFLPKPTVQNLMLKVLLNQIVLGPCVIAVVFAW 150

Query: 122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
           NNLW   +S+LP KY++DA PTLLYGFRFWIPV++LNFWV+PLQARVAFMSMGS+FWNFY
Sbjct: 151 NNLWLRKLSQLPEKYRRDAFPTLLYGFRFWIPVTVLNFWVVPLQARVAFMSMGSVFWNFY 210

Query: 182 LSSTMSK 188
           LSST++K
Sbjct: 211 LSSTITK 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242054303|ref|XP_002456297.1| hypothetical protein SORBIDRAFT_03g033650 [Sorghum bicolor] gi|241928272|gb|EES01417.1| hypothetical protein SORBIDRAFT_03g033650 [Sorghum bicolor]

 Score =  255 bits (651), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/184 (69%), Positives = 146/184 (79%), Gaps = 7/184 (3%)

Query: 5   FPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLR 64
           FP +QA TA SL FTGDTIAQ+  R   ++   +  + S +++L  D+    LL+HDW+R
Sbjct: 65  FPFRQAVTAASLTFTGDTIAQVRSRIVDRR---RCCADSDTKELIPDI----LLNHDWIR 117

Query: 65  AVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNL 124
           A+RM SYGFLLYGPGSY WYQ LD CMPKQT  NL  KV+LNQIVLGPCVIAV FAWNNL
Sbjct: 118 ALRMASYGFLLYGPGSYAWYQLLDRCMPKQTFVNLSAKVILNQIVLGPCVIAVIFAWNNL 177

Query: 125 WQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
           W G +SELP KYQ DALPTLLYGF+FWIPVSI+NFWVIPL ARVAFMS  SIFWNFYLS+
Sbjct: 178 WLGKLSELPAKYQNDALPTLLYGFKFWIPVSIVNFWVIPLPARVAFMSSCSIFWNFYLST 237

Query: 185 TMSK 188
           TMSK
Sbjct: 238 TMSK 241

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	188
TAIR|locus:2052403	232	AT2G42770 "AT2G42770" [Arabido	0.968	0.784	0.743	8.1e-76
ZFIN|ZDB-GENE-040426-1168	177	mpv17 "MpV17 transgene, murine	0.75	0.796	0.331	5.8e-20
UNIPROTKB|Q9NR77	195	PXMP2 "Peroxisomal membrane pr	0.632	0.610	0.291	3.4e-18
UNIPROTKB|Q2KIY1	196	PXMP2 "Peroxisomal membrane pr	0.632	0.607	0.275	1.2e-16
RGD|61812	194	Pxmp2 "peroxisomal membrane pr	0.632	0.613	0.291	1.6e-16
UNIPROTKB|G3V9N2	194	Pxmp2 "Peroxisomal membrane pr	0.632	0.613	0.291	1.6e-16
MGI|MGI:107487	194	Pxmp2 "peroxisomal membrane pr	0.632	0.613	0.3	2e-16
ZFIN|ZDB-GENE-040912-184	194	zgc:92599 "zgc:92599" [Danio r	0.648	0.628	0.276	4.1e-16
UNIPROTKB|P39210	176	MPV17 "Protein Mpv17" [Homo sa	0.702	0.75	0.319	1.4e-15
TAIR|locus:2167816	254	AT5G43140 "AT5G43140" [Arabido	0.654	0.484	0.290	2e-15

TAIR|locus:2052403 AT2G42770 "AT2G42770" [Arabidopsis thaliana (taxid:3702)]

 Score = 764 (274.0 bits), Expect = 8.1e-76, P = 8.1e-76
 Identities = 139/187 (74%), Positives = 158/187 (84%)

Query:     2 GYRFPLKQAATAGSLAFTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHD 61
             GYRFPLKQA TAG+L FTGDTIAQL  RW+K+ A +Q      S +LDE   W    +HD
Sbjct:    51 GYRFPLKQAVTAGALTFTGDTIAQLSGRWKKRTALKQS-----SSELDEGELWNIFSEHD 105

Query:    62 WLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAW 121
             W+RA+RM+SYGFLLYGPGSY WYQ+LDH +PK TA NL++KVLLNQ++LGP VIAV FAW
Sbjct:   106 WIRALRMSSYGFLLYGPGSYAWYQFLDHSLPKPTATNLVLKVLLNQVILGPSVIAVIFAW 165

Query:   122 NNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
             NNLW G +SEL NKYQKDALPTLLYGFRFW+PVSILNFWV+PLQARVAFMSMGS+FWNFY
Sbjct:   166 NNLWLGKLSELGNKYQKDALPTLLYGFRFWVPVSILNFWVVPLQARVAFMSMGSVFWNFY 225

Query:   182 LSSTMSK 188
             LSSTMSK
Sbjct:   226 LSSTMSK 232

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009536 "plastid" evidence=IDA

ZFIN|ZDB-GENE-040426-1168 mpv17 "MpV17 transgene, murine homolog, glomerulosclerosis" [Danio rerio (taxid:7955)]

 Score = 198 (74.8 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
 Identities = 48/145 (33%), Positives = 70/145 (48%)

Query:    45 SEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVL 104
             S+QL E      L +H+  R  +M S GF   GP    WY+ LD  +   T    + K+L
Sbjct:    35 SQQLIER---RGLANHNARRTAKMMSIGFFFVGPVVGGWYKVLDKLVTGGTKSAALKKML 91

Query:   105 LNQIVLGPCVIAVCFAWNNLWQG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIP 163
             ++Q+   PC +           G TV E   K Q+D    L+  +  W PV I NF+ IP
Sbjct:    92 VDQVGFAPCFLGAFLGITGTLNGLTVEENVAKLQRDYTDALISNYYLWPPVQIANFYFIP 151

Query:   164 LQARVAFMSMGSIFWNFYLSSTMSK 188
             L  R+A + + ++ WN YLS   +K
Sbjct:   152 LHHRLAVVQIVAVVWNSYLSWKANK 176

GO:0016021 "integral to membrane" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|Q9NR77 PXMP2 "Peroxisomal membrane protein 2" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query:    66 VRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLW 125
             +R   YGF   GP S+ +Y +++H +P +     + ++LL+++V  P  + + F   N  
Sbjct:    73 LRYAVYGFFFTGPLSHFFYFFMEHWIPPEVPLAGLRRLLLDRLVFAPAFLMLFFLIMNFL 132

Query:   126 QGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
             +G   S    K +    P L   +R W P+  +N   +PL+ RV F ++ ++FW  YL+S
Sbjct:   133 EGKDASAFAAKMRGGFWPALRMNWRVWTPLQFININYVPLKFRVLFANLAALFWYAYLAS 192

GO:0016021 "integral to membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005778 "peroxisomal membrane" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0043234 "protein complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q2KIY1 PXMP2 "Peroxisomal membrane protein 2" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
 Identities = 33/120 (27%), Positives = 61/120 (50%)

Query:    66 VRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLW 125
             +R   YGF   GP  + +Y  ++  +P +     + ++LL++++  P  +++ F   N  
Sbjct:    74 LRYAIYGFFFTGPLGHFFYLLMERWIPSEVPLAGIKRLLLDRLLFAPAFLSLFFLVMNFL 133

Query:   126 QGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
             +G   +    K +    P L   +R W PV  +N   IP+Q RV F ++ ++FW  YL+S
Sbjct:   134 EGQDTAAFAAKMKSGFWPALRMNWRVWTPVQFININYIPVQFRVLFANLVALFWYAYLAS 193

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

RGD|61812 Pxmp2 "peroxisomal membrane protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query:    66 VRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLW 125
             +R   YG  + GP S+  Y ++++ +P +     + ++LL+++   P  + + F   NL 
Sbjct:    72 LRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL 131

Query:   126 QG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
             +G  +S    K +    P L   +R W P+  +N   +PLQ RV F +M ++FW  YL+S
Sbjct:   132 EGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005777 "peroxisome" evidence=IDA

GO:0005778 "peroxisomal membrane" evidence=ISO;IDA

GO:0005779 "integral to peroxisomal membrane" evidence=TAS

GO:0043234 "protein complex" evidence=ISO

UNIPROTKB|G3V9N2 Pxmp2 "Peroxisomal membrane protein 2, isoform CRA_b" [Rattus norvegicus (taxid:10116)]

 Score = 169 (64.5 bits), Expect = 1.6e-16, Sum P(2) = 1.6e-16
 Identities = 35/120 (29%), Positives = 63/120 (52%)

Query:    66 VRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLW 125
             +R   YG  + GP S+  Y ++++ +P +     + ++LL+++   P  + + F   NL 
Sbjct:    72 LRYLVYGLFVTGPLSHYLYLFMEYWVPPEVPWARVKRLLLDRLFFAPTFLLLFFFVMNLL 131

Query:   126 QG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
             +G  +S    K +    P L   +R W P+  +N   +PLQ RV F +M ++FW  YL+S
Sbjct:   132 EGKNISVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

GO:0005739 "mitochondrion" evidence=IEA

GO:0005778 "peroxisomal membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

MGI|MGI:107487 Pxmp2 "peroxisomal membrane protein 2" [Mus musculus (taxid:10090)]

 Score = 171 (65.3 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 36/120 (30%), Positives = 63/120 (52%)

Query:    66 VRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLW 125
             +R   YG  + GP S+  Y ++++ +P +     + ++LL+++   P  + + F   NL 
Sbjct:    72 LRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLL 131

Query:   126 QG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSS 184
             +G  VS    K +    P L   +R W P+  +N   +PLQ RV F +M ++FW  YL+S
Sbjct:   132 EGKNVSVFVAKMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLAS 191

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0005778 "peroxisomal membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

ZFIN|ZDB-GENE-040912-184 zgc:92599 "zgc:92599" [Danio rerio (taxid:7955)]

 Score = 171 (65.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 34/123 (27%), Positives = 64/123 (52%)

Query:    63 LRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWN 122
             L  V    YG  + GP S+ +Y  L+  +P      L+ ++LL +++  P  + + +   
Sbjct:    69 LGPVHFAIYGLFITGPVSHYFYHLLEVLLPTTVPYCLIKRLLLERLIFAPAFLLLFYVVM 128

Query:   123 NLWQG-TVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFY 181
             N  +G T++++ NK +    P +   ++ W P   +N   +P+Q RV F +M ++FW  Y
Sbjct:   129 NALEGKTLADVQNKLKTSYWPAMKMNWKVWTPFQFININYVPVQFRVLFANMVALFWYAY 188

Query:   182 LSS 184
             L+S
Sbjct:   189 LAS 191

GO:0016021 "integral to membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|P39210 MPV17 "Protein Mpv17" [Homo sapiens (taxid:9606)]

 Score = 160 (61.4 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 46/144 (31%), Positives = 69/144 (47%)

Query:    45 SEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVL 104
             S+QL E      L +H   R + M S G    GP    WY+ LD  +P  T  + + K+L
Sbjct:    34 SQQLVER---RGLQEHQRGRTLTMVSLGCGFVGPVVGGWYKVLDRFIPGTTKVDALKKML 90

Query:   105 LNQIVLGPCVIAVCF-----AWNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNF 159
             L+Q    PC +  CF     A N L   +  +   K Q+D    L+  +  W  V + NF
Sbjct:    91 LDQGGFAPCFLG-CFLPLVGALNGL---SAQDNWAKLQRDYPDALITNYYLWPAVQLANF 146

Query:   160 WVIPLQARVAFMSMGSIFWNFYLS 183
             +++PL  R+A +   ++ WN YLS
Sbjct:   147 YLVPLHYRLAVVQCVAVIWNSYLS 170

GO:0016021 "integral to membrane" evidence=IEA

GO:0072593 "reactive oxygen species metabolic process" evidence=IEA

GO:0000002 "mitochondrial genome maintenance" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0003674 "molecular_function" evidence=ND

GO:0042592 "homeostatic process" evidence=IMP

GO:0032836 "glomerular basement membrane development" evidence=ISS

GO:0034614 "cellular response to reactive oxygen species" evidence=ISS

GO:0048839 "inner ear development" evidence=ISS

GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=ISS

GO:0005777 "peroxisome" evidence=NAS;IDA

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2167816 AT5G43140 "AT5G43140" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 2.0e-15, P = 2.0e-15
 Identities = 36/124 (29%), Positives = 63/124 (50%)

Query:    61 DWLRAVRMTSYGFLLYGPGSYVWYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFA 120
             D +R  RM S+G +  GP  ++W+ YL   +PK+       K+++ Q++ GP    V ++
Sbjct:   121 DLIRTARMASFGLIFLGPSQHLWFSYLSKILPKRDVLTTFKKIMMGQVLFGPVSNTVFYS 180

Query:   121 WNNLWQGTVSE-LPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWN 179
             +N   QG  SE +  + ++D LPTL  G  +W     + F  +P+  +    S  +  W 
Sbjct:   181 YNAALQGENSEEIVARLKRDLLPTLKNGLMYWPVCDFVTFKYVPVHLQPLMNSSCAYIWT 240

Query:   180 FYLS 183
              YL+
Sbjct:   241 IYLT 244

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005778 "peroxisomal membrane" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.4__2434__AT2G42770.1 annotation not avaliable (232 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	188
pfam04117	68	pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family	1e-14

>gnl|CDD|202894 pfam04117, Mpv17_PMP22, Mpv17 / PMP22 family

 Score = 65.3 bits (160), Expect = 1e-14
 Identities = 22/68 (32%), Positives = 36/68 (52%)

Query: 121 WNNLWQGTVSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNF 180
              L   ++ E+  K ++   PTL   ++ W PV  +NF  +P+  RV F+++  I WN 
Sbjct: 1   MGLLEGKSLEEIKEKLKEKFWPTLKANWKVWPPVQFINFAFVPVHYRVLFVNLVGIGWNT 60

Query: 181 YLSSTMSK 188
           YLS   +K
Sbjct: 61  YLSYVNNK 68

The 22-kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes. PMP22 seems to be involved in pore forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information. Mpv17 is a closely related peroxisomal protein. In mouse, the Mpv17 protein is involved in the development of early-onset glomerulosclerosis. More recently a homolog of Mpv17 in S. cerevisiae has been been found to be an integral membrane protein of the inner mitochondrial membrane where it has been proposed to have a role in ethanol metabolism and tolerance during heat-shock. Defects in MPV17 is associated with mitochondrial DNA depletion syndrome (MDDS) and Navajo neurohepatopathy (NNH). MDDS is a clinically heterogeneous group of disorders characterized by a reduction in mitochondrial DNA (mtDNA) copy number. Primary mtDNA depletion is inherited as an autosomal recessive trait and may affect single organs, typically muscle or liver, or multiple tissues. Individuals with the hepatocerebral form of mitochondrial DNA depletion syndrome have early progressive liver failure and neurologic abnormalities, hypoglycemia, and increased lactate in body fluids. NNH is an autosomal recessive disease that is prevalent among Navajo children in the South Western states of America. The major clinical features are hepatopathy, peripheral neuropathy, corneal anesthesia and scarring, acral mutilation, cerebral leukoencephalopathy, failure to thrive, and recurrent metabolic acidosis with intercurrent infections. Infantile, childhood, and classic forms of NNH have been described. Mitochondrial DNA depletion was detected in the livers of patients, suggesting a primary defect in mtDNA maintenance. Length = 68

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	188
KOG1944	222	consensus Peroxisomal membrane protein MPV17 and r	100.0
PF04117	68	Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR0	99.91

>KOG1944 consensus Peroxisomal membrane protein MPV17 and related proteins [General function prediction only]

Probab=100.00  E-value=1.9e-41  Score=272.15  Aligned_cols=162  Identities=36%  Similarity=0.603  Sum_probs=151.0

Q ss_pred             ch-HHHHHHHHHHH-HHHHHHHhhhHhhhhcchhhhhhcccccccchhhhhhhccCCchHHHHHHHHHHhccchhhhHHH
Q 044417            5 FP-LKQAATAGSLA-FTGDTIAQLIQRWRKQKASEQQHSLSRSEQLDEDVFWTALLDHDWLRAVRMTSYGFLLYGPGSYV   82 (188)
Q Consensus         5 ~P-lt~~~t~~~l~-~~gD~~aQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~R~~~~~~~G~~~~gP~~~~   82 (188)
                      +| ++++++++.+. .+||+++|.++...+..                      ..++|+.|++||+++|+++.||..|+
T Consensus        49 ~~~l~~~i~~~~~~~~~~d~~~q~~~~~~~~~----------------------~~~~d~~rtlr~~~~G~~f~gp~~~~  106 (222)
T KOG1944|consen   49 YPLLTKAITTSLLLAAAGDVISQSLEGRSKKL----------------------FQTLDLTRTLRMGIFGFLFVGPTLHY  106 (222)
T ss_pred             hhHHHHHHHHHHHHHHhchhhhhhhhhhcccc----------------------cccccHHHHHHHHhhhhheeccchhH
Confidence            67 78888887777 99999999998532110                      25799999999999998899999999


Q ss_pred             HHHHhhhhcCCCchhHHHHHHHHHhhhHhHHHHHHHHHHHHhhccC-cccchHHHHhhhHHHHHhcceehhhhhhheeee
Q 044417           83 WYQYLDHCMPKQTAGNLMMKVLLNQIVLGPCVIAVCFAWNNLWQGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWV  161 (188)
Q Consensus        83 wy~~L~~~~p~~~~~~~~~Kvl~dq~i~~P~~~~~f~~~~~~l~G~-~~~~~~~l~~~~~~~l~~~~~~Wp~~~~inF~~  161 (188)
                      ||..||+.+|.++..++++|+++||++++|+.+.+||.+++++||+ .+++.++++++++|+++++|++||++|++||.+
T Consensus       107 Wy~~L~~~~p~~~~~~~~~kvl~dql~~~P~~~~~ff~~~~~legk~~~~~~~~~~~~~~p~l~~~~~~WP~~q~inF~~  186 (222)
T KOG1944|consen  107 WYRLLSKLFPKKTLITVVKKVLLDQLVFAPLFIVVFFLLMGLLEGKTNEEAKAKLKRKFWPTLKANWMVWPLVQFINFRL  186 (222)
T ss_pred             HHHHHHHHccCccHHHHHHHHHHhhhhhchHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhhhheecchhheeeeEE
Confidence            9999999999999999999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             ecCCchhhhhhhhHHHHHHHHhhccCC
Q 044417          162 IPLQARVAFMSMGSIFWNFYLSSTMSK  188 (188)
Q Consensus       162 vP~~~Rvl~~n~v~~~Wn~yLS~~~~~  188 (188)
                      ||+++|++++|+++++||+|||+++++
T Consensus       187 VP~~~rvl~~~~vsl~W~~~Ls~~~~~  213 (222)
T KOG1944|consen  187 VPLQYRVLFVNIVSLVWNTYLSYKNAS  213 (222)
T ss_pred             ccccceehhhhhHHHHHHHHHHHHhhc
Confidence            999999999999999999999999875

>PF04117 Mpv17_PMP22: Mpv17 / PMP22 family ; InterPro: IPR007248 The 22 kDa peroxisomal membrane protein (PMP22) is a major component of peroxisomal membranes

Probab=99.91  E-value=1.4e-25  Score=148.65  Aligned_cols=67  Identities=37%  Similarity=0.711  Sum_probs=65.2

Q ss_pred             HHhhccC-cccchHHHHhhhHHHHHhcceehhhhhhheeeeecCCchhhhhhhhHHHHHHHHhhccCC
Q 044417          122 NNLWQGT-VSELPNKYQKDALPTLLYGFRFWIPVSILNFWVIPLQARVAFMSMGSIFWNFYLSSTMSK  188 (188)
Q Consensus       122 ~~~l~G~-~~~~~~~l~~~~~~~l~~~~~~Wp~~~~inF~~vP~~~Rvl~~n~v~~~Wn~yLS~~~~~  188 (188)
                      |+++||+ ++++++++|++|+++++++|++|||+|++||.|||+++|++|+|+++++||+|||+++||
T Consensus         1 Mg~l~g~s~~~~~~~l~~~~~~~~~~~~~~Wp~~~~vnF~~vP~~~Rv~~~~~v~~~W~~~LS~~~~r   68 (68)
T PF04117_consen    1 MGLLEGKSWEEIKEKLKRDYWPTLKASWKFWPPAQIVNFRYVPPHYRVLFVNVVSFFWNTYLSYIANR   68 (68)
T ss_pred             CCcccCCCHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhcccChhhhhhhhhhHHHHHHHHHHHHhcC
Confidence            5789998 899999999999999999999999999999999999999999999999999999999997

PMP22 seems to be involved in pore-forming activity and may contribute to the unspecific permeability of the organelle membrane. PMP22 is synthesised on free cytosolic ribosomes and then directed to the peroxisome membrane by specific targeting information []. Mpv17 is a closely related peroxisomal protein involved in the development of early-onset glomerulosclerosis []. A member of this family found in Saccharomyces cerevisiae (Baker's yeast) is an integral membrane protein of the inner mitochondrial membrane and has been suggested to play a role in mitochondrial function during heat shock [].; GO: 0016021 integral to membrane

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00