Citrus Sinensis ID: 044419

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISPVINKRLANVPCDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHcHHccccccccccccccccccHHHHHHccccccccccccccccccccccccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHHHcccccccccHHHccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mdenggsklnGIRQIVKLKEILQKWQSvtlsspkpsssqsspnhggispvinkrlanvpcdsdeescyspepphdvpkgylavyvgpelrrfiiptsylSHSLFKVLLEKAEEefgfdhcgaltipceIETFKYLLKCIESHqkdhsddisaedAVTIEE
Flexible Loop (DISEMBL)
mdenggsklngIRQIVKLKEILQKWQSVTlsspkpsssqsspnhGGISPVINKRLANVPCDSDEESCyspepphdvpkGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIEShqkdhsddisaedavtiee
Low Complexity Region (SEG)
MDENGGSKLNGIRQIVKLKEILQKWQSVTLsspkpsssqsspNHGGISPVINKRLANVPCDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE
Disordered region (IsUnstruct)
**********GIRQIVKLKEILQKWQ***************************************************KGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIE********************
Disordered Region (DISOPRED)
**************IVKLKEILQKW**************************************************V*KGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLK****************DAVTIE*
Disordered Region (DISEMBL)
MDENGGSKLNGIRQIVKLKEILQKWQS******************GISPVINKRLANVP************PPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIES*******************
Disordered Region (DISPRO)
*******KLNGIRQIVKLKEILQKWQSVTLS****************SPVI*KRLANVPC************PHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIES*******************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISPVINKRLANVPCDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.425	0.739	0.536	3e-16
P33081	82	Auxin-induced protein 15A	no	no	0.406	0.792	0.575	2e-15
P33082	82	Auxin-induced protein X15	no	no	0.406	0.792	0.560	3e-15
P33079	93	Auxin-induced protein 10A	no	no	0.362	0.623	0.644	1e-14
P33080	92	Auxin-induced protein X10	no	no	0.418	0.728	0.541	2e-14
P33083	90	Auxin-induced protein 6B	no	no	0.381	0.677	0.580	8e-14

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 51/69 (73%), Gaps = 1/69 (1%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
           D PKGYLAVYVG  ++RF+IP S+L+  LF+ LL +AEEEFG+DH  G LTIPC  + F+
Sbjct: 24  DAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTIPCSEDLFQ 83

Query: 134 YLLKCIESH 142
           ++  C+ + 
Sbjct: 84  HITSCLSAQ 92

Vigna radiata var. radiata (taxid: 3916)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 49/66 (74%), Gaps = 1/66 (1%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
           D PKGYLAVYVG +L+RF+IP SYL+   F+ LL +AEEEFG+DH  G LTIPC  + F+
Sbjct: 16  DAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIPCSEDVFQ 75

Query: 134 YLLKCI 139
            +  C+
Sbjct: 76  CITSCL 81

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 80.9 bits (198), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 37/66 (56%), Positives = 49/66 (74%), Gaps = 1/66 (1%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
           D PKGYLAVYVG +++RF+IP SY++   F+ LL +AEEEFG+DH  G LTIPC  E F+
Sbjct: 16  DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75

Query: 134 YLLKCI 139
            +  C+
Sbjct: 76  RITCCL 81

Glycine max (taxid: 3847)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 45/59 (76%), Gaps = 1/59 (1%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETF 132
           DVPKGY AVYVG ++RRF IP SYL+   F+ LL +AEEEFG+DH  G LTIPC+ E F
Sbjct: 25  DVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEEF 83

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 50/72 (69%), Gaps = 5/72 (6%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
           +VPKGYL VYVG ++RRF+IP SYL+   F+ LL +AEEEFG+DH  G LTIPC+ + F 
Sbjct: 24  EVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDEF- 82

Query: 134 YLLKCIESHQKD 145
                + SH  D
Sbjct: 83  ---LTVTSHLND 91

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 76.3 bits (186), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%), Gaps = 1/62 (1%)

Query: 75  DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFK 133
           DV KGYLAVYVG ++RRF+IP SYL+   F+ LL +AEEEFG+ H  G LTIPC  + F+
Sbjct: 24  DVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHHPNGGLTIPCSEDVFQ 83

Query: 134 YL 135
           ++
Sbjct: 84  HI 85

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224068552	160	SAUR family protein [Populus trichocarpa	0.993	0.993	0.751	2e-61
24943206	156	auxin-regulated protein [Phaseolus vulga	0.968	0.993	0.720	9e-60
255550329	161	Indole-3-acetic acid-induced protein ARG	0.975	0.968	0.732	4e-59
224142769	167	SAUR family protein [Populus trichocarpa	0.981	0.940	0.717	7e-59
356565655	157	PREDICTED: uncharacterized protein LOC10	0.968	0.987	0.709	1e-58
297808147	165	hypothetical protein ARALYDRAFT_488986 [	1.0	0.969	0.719	9e-58
449450125	167	PREDICTED: uncharacterized protein LOC10	0.993	0.952	0.702	2e-57
15229222	160	SAUR-like auxin-responsive protein [Arab	0.981	0.981	0.717	2e-57
116831262	161	unknown [Arabidopsis thaliana]	0.981	0.975	0.717	2e-57
351722237	157	uncharacterized protein LOC100527760 [Gl	0.968	0.987	0.685	6e-57

>gi|224068552|ref|XP_002326143.1| SAUR family protein [Populus trichocarpa] gi|222833336|gb|EEE71813.1| SAUR family protein [Populus trichocarpa]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 121/161 (75%), Positives = 135/161 (83%), Gaps = 2/161 (1%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISPVINKRLANVPC 60
           MD+N  SKL GIRQIV+LKEIL KWQSVT+ S + S     P++G I P +NKRL +V C
Sbjct: 1   MDDNSSSKLTGIRQIVRLKEILHKWQSVTIGSKETSPPSGHPSNG-IPPAVNKRLNSVKC 59

Query: 61  -DSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH 119
            DSDE+SC+SPEPP DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEK EEEFGFDH
Sbjct: 60  CDSDEDSCHSPEPPADVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKVEEEFGFDH 119

Query: 120 CGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
            GALTIPCEIETFK+LLKC+ESH KDH D+ SAE A+ IEE
Sbjct: 120 TGALTIPCEIETFKFLLKCMESHPKDHDDEGSAEGALAIEE 160

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24943206|gb|AAN65371.1| auxin-regulated protein [Phaseolus vulgaris]

 Score =  234 bits (597), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 6/161 (3%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISPVINKRLANVP- 59
           MD+ GGSKL+GIRQIV+LKE+ QKWQ+VTL S + +        GGI P+INKRL NV  
Sbjct: 1   MDDGGGSKLSGIRQIVRLKEMFQKWQTVTLGSKESNHDSDVARPGGIPPMINKRLTNVLY 60

Query: 60  CDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH 119
           CDSDE+SCYSP+PPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKA EEFGFD 
Sbjct: 61  CDSDEDSCYSPQPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAAEEFGFDQ 120

Query: 120 CGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
            G LTIPCEIETFKYLL C+E+H     DD SA +  T+EE
Sbjct: 121 SGGLTIPCEIETFKYLLNCMENH-----DDSSAGNTGTVEE 156

Source: Phaseolus vulgaris

Species: Phaseolus vulgaris

Genus: Phaseolus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550329|ref|XP_002516215.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis] gi|223544701|gb|EEF46217.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 118/161 (73%), Positives = 131/161 (81%), Gaps = 5/161 (3%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSS--PKPSSSQSSPNHGGISPVINKRLANV 58
           MD++GGSK+ GIRQIV+LKEILQKWQSVT+ S  P+P     SP  GGISP+INKRL  +
Sbjct: 1   MDDHGGSKVTGIRQIVRLKEILQKWQSVTIGSKAPEPEGGTRSPP-GGISPMINKRLKGI 59

Query: 59  P--CDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFG 116
              CDSDEE+C SP  P DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEK EEEFG
Sbjct: 60  QNCCDSDEENCQSPGSPPDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKVEEEFG 119

Query: 117 FDHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVT 157
           FDH G LTIPCEIETFK+LLKC+E H KDH DD S E+ + 
Sbjct: 120 FDHSGGLTIPCEIETFKFLLKCMEHHPKDHQDDSSNEEFIN 160

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142769|ref|XP_002324724.1| SAUR family protein [Populus trichocarpa] gi|222866158|gb|EEF03289.1| SAUR family protein [Populus trichocarpa]

 Score =  231 bits (589), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 122/170 (71%), Positives = 134/170 (78%), Gaps = 13/170 (7%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSS-----PKPSSSQSSPNHGGISPVINKRL 55
           MD+  GSKL GIRQIV+LKEILQKWQS+T+ S     P P S QS     GI P INKRL
Sbjct: 1   MDDYSGSKLTGIRQIVRLKEILQKWQSLTVGSKETSLPSPPSDQSP---CGIPPAINKRL 57

Query: 56  ANVPC-DSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEE 114
            +V C DSDEESC+SPEPP DVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLL K EEE
Sbjct: 58  NSVTCCDSDEESCHSPEPPADVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLVKVEEE 117

Query: 115 FGFDHCGALTIPCEIETFKYLLKCIESHQKDHSD----DISAEDAVTIEE 160
           FGFDH GALTIPCEIETFK+LL+C+E+   DH D    D +AEDA T+EE
Sbjct: 118 FGFDHTGALTIPCEIETFKFLLQCMENRPNDHEDEGPGDFAAEDAFTVEE 167

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565655|ref|XP_003551054.1| PREDICTED: uncharacterized protein LOC100795275 [Glycine max]

 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 132/162 (81%), Gaps = 7/162 (4%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSS-SQSSPNHGGISPVINKRLAN-V 58
           M++ GGSKL+GI+QIV+LKEI QKWQ+VTL S   ++ S  + +HGGISP+INKRL N V
Sbjct: 1   MEDAGGSKLHGIKQIVRLKEIFQKWQTVTLGSKDSNNHSDVTRHHGGISPMINKRLTNIV 60

Query: 59  PCDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFD 118
            CDSDE+ CYSP+PPHDVPKGYLAVYVGPELRRFIIPT+YLSH LFKVLLEKA EEFGFD
Sbjct: 61  YCDSDEDGCYSPQPPHDVPKGYLAVYVGPELRRFIIPTTYLSHPLFKVLLEKAAEEFGFD 120

Query: 119 HCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
             G LTIPCEIETFKYLL CIE+H     DD S  +  T+EE
Sbjct: 121 QSGGLTIPCEIETFKYLLNCIENH-----DDSSTGNTGTVEE 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808147|ref|XP_002871957.1| hypothetical protein ARALYDRAFT_488986 [Arabidopsis lyrata subsp. lyrata] gi|297317794|gb|EFH48216.1| hypothetical protein ARALYDRAFT_488986 [Arabidopsis lyrata subsp. lyrata]

 Score =  228 bits (580), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 118/164 (71%), Positives = 130/164 (79%), Gaps = 4/164 (2%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLS--SPKPSSSQSSPNHGGISPVINKRLANV 58
           MDEN  +KL GIRQIV+LKEILQKWQ+VT+   S  P  +        ISP INKRL +V
Sbjct: 1   MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSDVPPLAAGKQAVAMISPAINKRLLDV 60

Query: 59  P-CDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
              DSDEE+C SPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF
Sbjct: 61  KNGDSDEENCQSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 120

Query: 118 DHCGALTIPCEIETFKYLLKCIESHQKD-HSDDISAEDAVTIEE 160
           D  GALTIPCE+ETFKYLLKC+E++ KD H DD S  DAV  +E
Sbjct: 121 DQSGALTIPCEVETFKYLLKCMENNLKDLHPDDNSDGDAVAAKE 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450125|ref|XP_004142814.1| PREDICTED: uncharacterized protein LOC101207913 [Cucumis sativus] gi|449523425|ref|XP_004168724.1| PREDICTED: uncharacterized LOC101207913 [Cucumis sativus]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 133/168 (79%), Gaps = 9/168 (5%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTL------SSPKPSSSQSSPNHGGISPVINKR 54
           MDENGG K+ GIRQIV+LKE LQ WQ VT+      ++ +  S   + NHG +SP INKR
Sbjct: 1   MDENGGIKM-GIRQIVRLKETLQHWQGVTVCPKSKAAAHENGSQNQNQNHGILSPAINKR 59

Query: 55  LANVPC-DSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEE 113
           L NV C DSDEE+C SPE P DVPKGYLAVYVGPELRRFIIPTSYL HS+FKVLLEKAEE
Sbjct: 60  LTNVLCCDSDEETCQSPEHPPDVPKGYLAVYVGPELRRFIIPTSYLRHSVFKVLLEKAEE 119

Query: 114 EFGFDHCGALTIPCEIETFKYLLKCIESHQKDHSDDIS-AEDAVTIEE 160
           EFGFDH GALT PCEIE FKYLLKC+ES QKDH DD + AE ++T+EE
Sbjct: 120 EFGFDHSGALTFPCEIEIFKYLLKCMESQQKDHPDDHTPAESSMTMEE 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229222|ref|NP_189898.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana] gi|7529253|emb|CAB86483.1| putative protein [Arabidopsis thaliana] gi|91806518|gb|ABE65986.1| auxin-responsive protein-like protein [Arabidopsis thaliana] gi|332644245|gb|AEE77766.1| SAUR-like auxin-responsive protein [Arabidopsis thaliana]

 Score =  226 bits (577), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 131/163 (80%), Gaps = 6/163 (3%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGI-SPVINKRLANV- 58
           MDEN  +KL GI+QIV+LKEILQKWQ+VT+ S        +  H  I SPVINKRL ++ 
Sbjct: 1   MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLK 60

Query: 59  PCDSDEES-CYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
            CDSDEE+ C SPEPP DVPKGYLAVYVGPELRRFIIPT++LSHSLFKVLLEKAEEE+GF
Sbjct: 61  TCDSDEETTCQSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGF 120

Query: 118 DHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
           DH GALTIPCE+ETFKYLLKCIE+H K   DD SAED V  EE
Sbjct: 121 DHSGALTIPCEVETFKYLLKCIENHPK---DDTSAEDPVETEE 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831262|gb|ABK28585.1| unknown [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 117/163 (71%), Positives = 131/163 (80%), Gaps = 6/163 (3%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGI-SPVINKRLANV- 58
           MDEN  +KL GI+QIV+LKEILQKWQ+VT+ S        +  H  I SPVINKRL ++ 
Sbjct: 1   MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLK 60

Query: 59  PCDSDEES-CYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
            CDSDEE+ C SPEPP DVPKGYLAVYVGPELRRFIIPT++LSHSLFKVLLEKAEEE+GF
Sbjct: 61  TCDSDEETTCQSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGF 120

Query: 118 DHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
           DH GALTIPCE+ETFKYLLKCIE+H K   DD SAED V  EE
Sbjct: 121 DHSGALTIPCEVETFKYLLKCIENHPK---DDTSAEDPVETEE 160

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722237|ref|NP_001236981.1| uncharacterized protein LOC100527760 [Glycine max] gi|255633130|gb|ACU16920.1| unknown [Glycine max]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 111/162 (68%), Positives = 131/162 (80%), Gaps = 7/162 (4%)

Query: 1   MDENGGSKLNGIRQIVKLKEILQKWQSVTLSSPKPSS-SQSSPNHGGISPVINKRLAN-V 58
           M++ GGSKL+GI+QIV+LKE+ QKWQ+VTL S   ++ S  + +HG +SP+INKRL + V
Sbjct: 1   MEDAGGSKLHGIKQIVRLKEMFQKWQTVTLGSKDSNNHSDVTHHHGVLSPMINKRLTDIV 60

Query: 59  PCDSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFD 118
            CDSDE+ CYSP+PPHDVPKGYL VYVGP+LRRFIIPTSYLSHSLFK LLEKA EEFGFD
Sbjct: 61  YCDSDEDGCYSPQPPHDVPKGYLTVYVGPQLRRFIIPTSYLSHSLFKALLEKAAEEFGFD 120

Query: 119 HCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
             G LTIPCEIETFKYLL CIE+H     DD S E+  T+EE
Sbjct: 121 QSGGLTIPCEIETFKYLLNCIENH-----DDSSTENTGTVEE 157

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.981	0.981	0.711	8.6e-56
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.956	0.805	0.707	2.7e-52
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.862	0.730	0.406	1.7e-20
TAIR|locus:2061037	178	AT2G24400 "AT2G24400" [Arabido	0.806	0.724	0.421	2.1e-20
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.487	0.527	0.468	3.4e-18
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.556	0.577	0.415	5.5e-18
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.512	0.535	0.426	3.7e-17
TAIR|locus:2139569	150	AT4G34750 [Arabidopsis thalian	0.562	0.6	0.355	4.1e-16
TAIR|locus:2060928	112	AT2G18010 "AT2G18010" [Arabido	0.537	0.767	0.471	6e-16
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.5	0.769	0.5	6e-16

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 116/163 (71%), Positives = 129/163 (79%)

Query:     1 MDENGGSKLNGIRQIVKLKEILQKWQSVTLXXXXXXXXXXXXNHGGI-SPVINKRLANVP 59
             MDEN  +KL GI+QIV+LKEILQKWQ+VT+             H  I SPVINKRL ++ 
Sbjct:     1 MDENNAAKLTGIKQIVRLKEILQKWQTVTIGSKSDDGELGARKHTAIISPVINKRLLDLK 60

Query:    60 -CDSDEES-CYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
              CDSDEE+ C SPEPP DVPKGYLAVYVGPELRRFIIPT++LSHSLFKVLLEKAEEE+GF
Sbjct:    61 TCDSDEETTCQSPEPPPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGF 120

Query:   118 DHCGALTIPCEIETFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
             DH GALTIPCE+ETFKYLLKCIE+H KD   D SAED V  EE
Sbjct:   121 DHSGALTIPCEVETFKYLLKCIENHPKD---DTSAEDPVETEE 160

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 111/157 (70%), Positives = 122/157 (77%)

Query:     1 MDENGGSKLNGIRQIVKLKEILQKWQSVTLXXXXXXXXXXXXNHGG--ISPVINKRLANV 58
             MDEN  +KL GIRQIV+LKEILQKWQ+VT+                  ISP INKRL +V
Sbjct:     1 MDENNAAKLTGIRQIVRLKEILQKWQTVTIGPKSEVPPLAAGKQAVAMISPAINKRLLDV 60

Query:    59 PC-DSDEESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
                DSDEE+C SPEPPHDVPKG LAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF
Sbjct:    61 KNGDSDEETCQSPEPPHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 120

Query:   118 DHCGALTIPCEIETFKYLLKCIESHQKD-HSDDISAE 153
             D  GALTIPCE+ETFKYLLKC+E++ KD H DD S +
Sbjct:   121 DQSGALTIPCEVETFKYLLKCMENNLKDLHPDDNSGK 157

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 59/145 (40%), Positives = 79/145 (54%)

Query:     8 KLNGIRQIVKLKEILQKWQSVTLXXXXXXXXXXXX---NHGGISPVINKRLANVPCDSDE 64
             K N IR+IVKL++IL+KW+ V                 ++  IS  IN   +     S  
Sbjct:     5 KSNKIREIVKLQQILKKWRKVAHASKQANNNKIDNVDDSNNNISININNNGSGSGSGSKS 64

Query:    65 ----ESCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHC 120
                 +   S      +PKGYLAV VG E +R+ IPT YLSH  F VLL +AEEEFGF+  
Sbjct:    65 IKFLKRTLSFTDTTAIPKGYLAVSVGKEEKRYKIPTEYLSHQAFHVLLREAEEEFGFEQA 124

Query:   121 GALTIPCEIETFKYLLKCIESHQKD 145
             G L IPCE+  F+ +LK +E ++ D
Sbjct:   125 GILRIPCEVAVFESILKIMEDNKSD 149

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2061037 AT2G24400 "AT2G24400" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 59/140 (42%), Positives = 77/140 (55%)

Query:     8 KLNGIRQIVKLKEILQKWQSVTLXXXXXXXXXXXXNH-GGISPVINKRLANVPCDSDEES 66
             K N IR+IVKL+++L+KW+   +            N  GG S  I K L      +D  +
Sbjct:     5 KSNKIREIVKLQQLLKKWRKQAIASKAANNNNEDNNSSGGGSKSI-KFLKRTLSFTDVTA 63

Query:    67 CYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIP 126
                      VPKGYLAV VG E +R+ IPT YLSH  F VLL +AEEEFGF   G L IP
Sbjct:    64 ---------VPKGYLAVSVGLEKKRYTIPTEYLSHQAFYVLLREAEEEFGFQQAGVLRIP 114

Query:   127 CEIETFKYLLKCIESHQKDH 146
             CE+  F+ +LK +E   + +
Sbjct:   115 CEVSVFESILKIMEEKNEGY 134

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 3.4e-18, Sum P(2) = 3.4e-18
 Identities = 37/79 (46%), Positives = 51/79 (64%)

Query:    73 PHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETF 132
             P DVP G++AVYVG   RRF++  +YL+H +   LL KAEEEFGF + G L IPCE   F
Sbjct:    38 PSDVPSGHVAVYVGRSCRRFVVLATYLNHPILMNLLVKAEEEFGFANQGPLVIPCEESVF 97

Query:   133 KYLLKCI-ESHQKDHSDDI 150
             +  ++ I  S +   +DD+
Sbjct:    98 EESIRFITRSSRFTCTDDL 116

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 5.5e-18, Sum P(2) = 5.5e-18
 Identities = 37/89 (41%), Positives = 52/89 (58%)

Query:    66 SCYSPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTI 125
             S +S   P DVP G++AVYVG   RRF++  +YL+H + + LL +AEEEFGF + G L I
Sbjct:    32 SSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATYLNHPVLRNLLVQAEEEFGFVNQGPLVI 91

Query:   126 PCEIETFKYLLKCIESHQKDHSDDISAED 154
             PCE   F+  ++ I       S   +  D
Sbjct:    92 PCEESVFEESIRFISRSDSTRSRRFTCPD 120

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
 Identities = 35/82 (42%), Positives = 47/82 (57%)

Query:    73 PHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETF 132
             P DVP G++AV VG   RRF++  SYL+H +   LL +AEEEFGF + G L IPCE   F
Sbjct:    38 PSDVPSGHVAVCVGSGCRRFVVRASYLNHPIISNLLVQAEEEFGFANQGPLVIPCEESVF 97

Query:   133 KYLLKCIESHQKDHSDDISAED 154
             +  ++ I       S   +  D
Sbjct:    98 EEAIRFISRSDSSRSSRFTCPD 119

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139569 AT4G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 32/90 (35%), Positives = 53/90 (58%)

Query:    71 EPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIE 130
             +P  DVP G++AV VG   RR+++   +L+H +F+ LL +AEEE+GF + G L IPC+  
Sbjct:    32 DPVSDVPPGHVAVSVGENRRRYVVRAKHLNHPIFRRLLAEAEEEYGFANVGPLAIPCDES 91

Query:   131 TFKYLLKCIESHQKDHSDDISAEDAVTIEE 160
              F+ ++  +   +   S       A T+E+
Sbjct:    92 LFEDIIAIVTRCESSSSSGRGNPPAATLED 121

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2060928 AT2G18010 "AT2G18010" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 42/89 (47%), Positives = 55/89 (61%)

Query:    51 INKRLANVPCDSDEESCY---SPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVL 107
             I KR +++    +   CY     + P DVPKG+  VYVGP   R+I+P S+L HS F+ L
Sbjct:    20 IVKRCSSLRKMKNVNGCYYNQEDDLPQDVPKGHFPVYVGPNRSRYIVPISWLHHSEFQTL 79

Query:   108 LEKAEEEFGFDHCGALTIPCEIETFKYLL 136
             L  AEEEFGFDH   LTIPC+   F+ L+
Sbjct:    80 LRLAEEEFGFDHDMGLTIPCDEVFFRSLI 108

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 41/82 (50%), Positives = 53/82 (64%)

Query:    60 CDS-DEESCYSPEP-PHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGF 117
             C S  +  CY  +  P DVPKG+  VYVG +  R+I+P S+L+H  FK LL++AEEEFGF
Sbjct:    22 CSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISFLTHPKFKSLLQQAEEEFGF 81

Query:   118 DHCGALTIPCEIETFKYLLKCI 139
             +H   LTIPCE   F+ L   I
Sbjct:    82 NHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR46 SAUR family protein (160 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	4e-39
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	1e-23
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	1e-18
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-16

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  127 bits (322), Expect = 4e-39
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 69  SPEPPHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCE 128
           S     DVPKG+ AVYVG E RRF++P SYL+H LF+ LL++AEEEFGFD  G LTIPC+
Sbjct: 28  SKSSSADVPKGHFAVYVGEETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLTIPCD 87

Query: 129 IETFKYLLKCIE 140
           +  F++LL  +E
Sbjct: 88  VVVFEHLLWMLE 99

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 88.3 bits (219), Expect = 1e-23
 Identities = 37/67 (55%), Positives = 46/67 (68%)

Query: 73  PHDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETF 132
           P DVPKG+  VYVG    R+I+P S+L+H  F+ LL++AEEEFGFDH   LTIPCE   F
Sbjct: 37  PLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVF 96

Query: 133 KYLLKCI 139
           + L   I
Sbjct: 97  RSLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 75.9 bits (186), Expect = 1e-18
 Identities = 39/71 (54%), Positives = 51/71 (71%), Gaps = 6/71 (8%)

Query: 76  VPKGYLAVYVGPEL--RRFIIPTSYLSHSLFKVLLEKAEEEFGFDHC-GALTIPCEIETF 132
           VPKG++AVYVG ++  +RF++P SYL+H LF+  L +AEEE GF H  G LTIPC  E+F
Sbjct: 39  VPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESF 98

Query: 133 KYLLKCIESHQ 143
            +L   I SHQ
Sbjct: 99  LHL---ITSHQ 106

Length = 108

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 70.2 bits (171), Expect = 2e-16
 Identities = 34/62 (54%), Positives = 45/62 (72%), Gaps = 5/62 (8%)

Query: 76  VPKGYLAVYVGPEL----RRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIE 130
           VPKG++AVYVG ++    +RF++P S+L+H  FK  L +AEEEFGF+H  G LTIPC  E
Sbjct: 35  VPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREE 94

Query: 131 TF 132
            F
Sbjct: 95  VF 96

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	87.35
PRK02899	197	adaptor protein; Provisional	81.92

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=8.5e-42  Score=256.45  Aligned_cols=101  Identities=47%  Similarity=0.722  Sum_probs=89.2

Q ss_pred             CCCccchhhHHHHHHHHHHHHhcccCCCCCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCceEEEEe
Q 044419            6 GSKLNGIRQIVKLKEILQKWQSVTLSSPKPSSSQSSPNHGGISPVINKRLANVPCDSDEESCYSPEPPHDVPKGYLAVYV   85 (160)
Q Consensus         6 ~~k~~kI~~ivrLkq~lkKWq~~a~~~k~~~~~~~~~~~~~is~~~~KR~~~~~~~~d~~~c~s~~~~~~vpkG~~aVYV   85 (160)
                      -+|++||+||++||||||||++++...  +                          .+++     ..|.+||+|||||||
T Consensus         3 ~~k~~ki~~~~~~kq~l~r~~s~~~~~--~--------------------------~~~~-----~~~~~vpkG~~aVyV   49 (104)
T PLN03090          3 IKKSNKLTQTAMLKQILKRCSSLGKKQ--G--------------------------YDED-----GLPLDVPKGHFPVYV   49 (104)
T ss_pred             cccccchhHHHHHHHHHHHHHHhcccC--C--------------------------cccc-----cCCCCCCCCcEEEEE
Confidence            368899999999999999999874321  0                          0111     146789999999999


Q ss_pred             cCCceeEEEeccccccHHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHH
Q 044419           86 GPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCI  139 (160)
Q Consensus        86 G~e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~~G~L~IPCd~~~Fe~vl~~l  139 (160)
                      |++++||+||++|||||+|++||++|||||||.++|+|+|||++++|++++|+|
T Consensus        50 G~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         50 GENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=4.9e-36  Score=223.06  Aligned_cols=67  Identities=63%  Similarity=1.072  Sum_probs=65.6

Q ss_pred             CCCCCceEEEEecCCceeEEEeccccccHHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHHh
Q 044419           74 HDVPKGYLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIE  140 (160)
Q Consensus        74 ~~vpkG~~aVYVG~e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~~G~L~IPCd~~~Fe~vl~~l~  140 (160)
                      .+||+||||||||++++||+||++|||||+|++||++|||||||.++|+|+|||++++|+++||+|+
T Consensus        34 ~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   34 SDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLLE  100 (100)
T ss_pred             CCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHhC
Confidence            6889999999999999999999999999999999999999999999999999999999999999985

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=1.6e-34  Score=217.26  Aligned_cols=65  Identities=55%  Similarity=1.000  Sum_probs=61.5

Q ss_pred             CCCCCCceEEEEecC----CceeEEEeccccccHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHH
Q 044419           73 PHDVPKGYLAVYVGP----ELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFKYLLK  137 (160)
Q Consensus        73 ~~~vpkG~~aVYVG~----e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~-~G~L~IPCd~~~Fe~vl~  137 (160)
                      +.+|||||||||||+    +++||+||+.|||||+|++||++|||||||.| +|+|+|||+++.|++++.
T Consensus        32 ~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~  101 (105)
T PLN03220         32 SDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIA  101 (105)
T ss_pred             cCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHH
Confidence            468999999999997    58999999999999999999999999999998 699999999999999985

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=9.2e-32  Score=203.13  Aligned_cols=68  Identities=53%  Similarity=0.925  Sum_probs=63.4

Q ss_pred             CCCCCCCceEEEEecC--CceeEEEeccccccHHHHHHHHHHHHhcCCCC-CCceeecCCHHHHHHHHHHH
Q 044419           72 PPHDVPKGYLAVYVGP--ELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDH-CGALTIPCEIETFKYLLKCI  139 (160)
Q Consensus        72 ~~~~vpkG~~aVYVG~--e~rRFvVp~~yLnhP~F~~LL~~aeEEfGf~~-~G~L~IPCd~~~Fe~vl~~l  139 (160)
                      .+.+|||||||||||+  +++||+||+.|||||+|++||++|||||||.+ +|+|+|||+++.|++||..-
T Consensus        35 ~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         35 TSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            3578999999999997  59999999999999999999999999999997 69999999999999998754

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=87.35  E-value=0.59  Score=32.87  Aligned_cols=54  Identities=24%  Similarity=0.236  Sum_probs=41.0

Q ss_pred             ceeEEEeccccc-c--HHHHHHHHHHHHhcCCCCCCceeecCCHHHHHHHHHHHhhC
Q 044419           89 LRRFIIPTSYLS-H--SLFKVLLEKAEEEFGFDHCGALTIPCEIETFKYLLKCIESH  142 (160)
Q Consensus        89 ~rRFvVp~~yLn-h--P~F~~LL~~aeEEfGf~~~G~L~IPCd~~~Fe~vl~~l~~~  142 (160)
                      +++|.++.+.|. +  ..|..|+..-.....-..+|.+-|-++...|++||..++..
T Consensus         7 G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    7 GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            688999988877 4  37888887542222233478999999999999999999985

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02899 adaptor protein; Provisional

Probab=81.92  E-value=1.3  Score=36.60  Aligned_cols=25  Identities=32%  Similarity=0.817  Sum_probs=21.7

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCceee
Q 044419          101 HSLFKVLLEKAEEEFGFDHCGALTI  125 (160)
Q Consensus       101 hP~F~~LL~~aeEEfGf~~~G~L~I  125 (160)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3467888999999999999999875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00