Citrus Sinensis ID: 044420
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | 2.2.26 [Sep-21-2011] | |||||||
| Q9C7A2 | 590 | Ankyrin repeat-containing | no | no | 0.704 | 0.650 | 0.226 | 1e-10 | |
| Q8C8R3 | 3898 | Ankyrin-2 OS=Mus musculus | yes | no | 0.455 | 0.063 | 0.265 | 6e-08 | |
| Q01484 | 3957 | Ankyrin-2 OS=Homo sapiens | yes | no | 0.455 | 0.062 | 0.265 | 7e-08 | |
| Q6AWW5 | 524 | Ankyrin repeat-containing | no | no | 0.634 | 0.660 | 0.237 | 3e-07 | |
| Q25338 | 1214 | Delta-latroinsectotoxin-L | N/A | no | 0.222 | 0.099 | 0.307 | 0.0007 |
| >sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 68.2 bits (165), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 111/490 (22%), Positives = 193/490 (39%), Gaps = 106/490 (21%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
ET L AA V+ELLK E + ++R+G A G I +++L +
Sbjct: 130 ETALFTAADKGHLDVVKELLKYSSRESIAKKNRSGYDPLHIAAIQGHHAIVEVLLDHDAT 189
Query: 107 LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166
L G N TPL AA+ ++ L A NL
Sbjct: 190 LSQTFGPSNATPLVSAAMRGHTEVVNQLLSKA---GNL---------------------- 224
Query: 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR 226
L ++R N + ALH+ AR QG ++++K A+L +
Sbjct: 225 --------LEISRSNN-KNALHLAAR---------QG--------HVEVIK----ALLSK 254
Query: 227 DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHAN 286
D + +K L A + + E + L+ + P +V + D + + H+A + A
Sbjct: 255 DPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDADPAIVMQPDKSCNTALHVATRKKRAE 314
Query: 287 IFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKE-- 344
I EL+ + D + N + H + + I G L + E + KE
Sbjct: 315 IV----------ELLLSLPDTNANTLTR-----DHKTALDIAEG--LPLSEESSYIKECL 357
Query: 345 -------VEKIVQP------TFREMKN-------SEGKTPRELFSI--EHSSLLRSGELW 382
++ QP T ++KN +T + + +I E L R G
Sbjct: 358 ARSGALRANELNQPRDELRSTVTQIKNDVHIQLEQTKRTNKNVHNISKELRKLHREG--- 414
Query: 383 MKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIHLRETLFQVFAMSDVMALSSSS 442
+ N S +VA L AT+ FAA F+VPGG DNN G + + F++F + + +AL +S
Sbjct: 415 INNATNSVTVVAVLFATVAFAAIFTVPGG-DNNDGSAVVVGRASFKIFFIFNALALFTSL 473
Query: 443 ISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWV 502
+++ ++++ + + KLM +++ + VAF + ++ + W
Sbjct: 474 AVVVVQITLVRGETKAEKRVVEVINKLM------WLASMCTSVAFLASSYIVVGRKNEWA 527
Query: 503 TTVTTVLAAV 512
+ TV+ V
Sbjct: 528 AELVTVVGGV 537
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8C8R3|ANK2_MOUSE Ankyrin-2 OS=Mus musculus GN=Ank2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 59.7 bits (143), Expect = 6e-08, Method: Composition-based stats.
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 34/282 (12%)
Query: 50 LHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLT 109
LHLAA G V+ELL + + + GNTA A AG + K+++K+ +
Sbjct: 68 LHLAAKEGHVGLVQELLG--RGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANI-N 124
Query: 110 MRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDL---HDLAL 166
+ TPLYMAA D+ YL ++ + T + FT ++ L H+ A+
Sbjct: 125 AQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDG-----FTPLAVALQQGHNQAV 179
Query: 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR 226
+L ++ R ALH+ ARK +++ LL + H+A K + + +
Sbjct: 180 AILLENDTKGKVR----LPALHIAARKDD---TKSAALLLQNDHNADVQSKMM---VNRT 229
Query: 227 DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHAN 286
+S FT P H+ AA GN +A L+ + V N + H+A + N
Sbjct: 230 TESGFT-----PLHI---AAHYGNVN-VATLLLNRGAAVDFTARNGITPLHVASKRGNTN 280
Query: 287 IFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
+ L+ + G + K D LH AA+S H V ++
Sbjct: 281 MVKLLLDRGGQIDA----KTRDGLTPLHCAARSGHDQVVELL 318
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Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes (By similarity). Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate. Mus musculus (taxid: 10090) |
| >sp|Q01484|ANK2_HUMAN Ankyrin-2 OS=Homo sapiens GN=ANK2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 59.3 bits (142), Expect = 7e-08, Method: Composition-based stats.
Identities = 75/282 (26%), Positives = 122/282 (43%), Gaps = 34/282 (12%)
Query: 50 LHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLT 109
LHLAA G V+ELL + + + GNTA A AG + K+++K+ +
Sbjct: 68 LHLAAKEGHVGLVQELLG--RGSSVDSATKKGNTALHIASLAGQAEVVKVLVKEGANI-N 124
Query: 110 MRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDL---HDLAL 166
+ TPLYMAA D+ YL ++ + T + FT ++ L H+ A+
Sbjct: 125 AQSQNGFTPLYMAAQENHIDVVKYLLENGANQSTATEDG-----FTPLAVALQQGHNQAV 179
Query: 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR 226
+L ++ R ALH+ ARK +++ LL + H+A K + + +
Sbjct: 180 AILLENDTKGKVR----LPALHIAARKDD---TKSAALLLQNDHNADVQSKMM---VNRT 229
Query: 227 DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHAN 286
+S FT P H+ AA GN +A L+ + V N + H+A + N
Sbjct: 230 TESGFT-----PLHI---AAHYGNVN-VATLLLNRGAAVDFTARNGITPLHVASKRGNTN 280
Query: 287 IFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328
+ L+ + G + K D LH AA+S H V ++
Sbjct: 281 MVKLLLDRGGQIDA----KTRDGLTPLHCAARSGHDQVVELL 318
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Attaches integral membrane proteins to cytoskeletal elements. Also binds to cytoskeletal proteins. Required for coordinate assembly of Na/Ca exchanger, Na/K ATPase and InsP3 receptor at sarcoplasmic reticulum sites in cardiomyocytes. Required for the coordinated expression of the Na/K ATPase, Na/Ca exchanger and beta-2-spectrin (SPTBN1) in the inner segment of rod photoreceptors. Required for expression and targeting of SPTBN1 in neonatal cardiomyocytes and for the regulation of neonatal cardiomyocyte contraction rate. Homo sapiens (taxid: 9606) |
| >sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 101/426 (23%), Positives = 163/426 (38%), Gaps = 80/426 (18%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSI--LCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
PL A +G ++G D + L A + ET L++AA + G+ + + LM
Sbjct: 20 PLHTAVREGKTDLLLEMIGEHDGVELKELLAEQNQSGETALYVAA---EYGYTDMVKILM 76
Query: 70 KPEDLTL---QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA 126
K D L + +NG AF A G++ + ++++ N L T L+ AA
Sbjct: 77 KHSDSVLAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQG 136
Query: 127 QRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA 186
++ +L D DLA A+AR N +TA
Sbjct: 137 HGEIVCFLLDKGV-----------------------DLA----------AIARS-NGKTA 162
Query: 187 LHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAA 246
LH AR +VK L E + T + +K L A
Sbjct: 163 LHSAARNGHTV-----------------IVKKLIE----KKAGMVTRVDKKGQTALHMAV 201
Query: 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKD 306
+ N E + L+ + L++ D+ + HIAV A I + + E+ +
Sbjct: 202 KGQNTEIVDVLMEADGSLINSADNKGNTPLHIAVRKNRAEIVQTVLKYC---EVSRVAVN 258
Query: 307 HDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVE-----KIVQPTFREMKN--- 358
L +A K+ V ++ +Q R + ++VE + ++ T E+ +
Sbjct: 259 KSGETALDIAEKTGLHEIVPLLQKIGMQNARSIKPAEKVEPSGSSRKLKETVSEIGHEVH 318
Query: 359 ----SEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGG-ND 413
G+T RE+ I E + N S LVA LIAT+ FAA F+VPG D
Sbjct: 319 TQLEQTGRTRREIQGIAKRVNKMHTE-GLNNAINSTTLVAILIATVAFAAIFNVPGQYTD 377
Query: 414 NNKGIP 419
+ K +P
Sbjct: 378 DPKDVP 383
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q25338|LITD_LATTR Delta-latroinsectotoxin-Lt1a OS=Latrodectus tredecimguttatus PE=1 SV=1 | Back alignment and function description |
|---|
Score = 46.2 bits (108), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 59/127 (46%), Gaps = 6/127 (4%)
Query: 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLK 67
N PL A AK LL +D I +A G T+LHLA Q ++ELLK
Sbjct: 706 NNWTPLHFAIYFKKEDAAKELLKQDD---INLTIVADGNLTVLHLAVSTGQINIIKELLK 762
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127
+ ++ + G T+ A IA ++L +N + R +N+TPL+ AA + +
Sbjct: 763 --RGSNIEEKTGEGYTSLHIAAMRKEPEIA-VVLIENGADIEARSADNLTPLHSAAKIGR 819
Query: 128 RDMALYL 134
+ LYL
Sbjct: 820 KSTVLYL 826
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Insecticidal toxin that induces massive neurotransmitter release at insect but not vertebrate neuromuscular junctions. Forms cation-permeable pores (with high permeability to calcium) in lipid membranes locust muscle membrane and artificial lipid bilayers. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism. Latrodectus tredecimguttatus (taxid: 6925) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | ||||||
| 225425076 | 563 | PREDICTED: ankyrin repeat-containing pro | 0.930 | 0.900 | 0.539 | 1e-156 | |
| 147860696 | 891 | hypothetical protein VITISV_011174 [Viti | 0.966 | 0.591 | 0.516 | 1e-156 | |
| 359472754 | 789 | PREDICTED: ankyrin repeat-containing pro | 0.985 | 0.680 | 0.530 | 1e-155 | |
| 359483665 | 762 | PREDICTED: ankyrin repeat-containing pro | 0.959 | 0.686 | 0.519 | 1e-151 | |
| 356558266 | 584 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.917 | 0.511 | 1e-151 | |
| 147784800 | 1697 | hypothetical protein VITISV_029434 [Viti | 0.970 | 0.311 | 0.495 | 1e-151 | |
| 297737987 | 1855 | unnamed protein product [Vitis vinifera] | 0.952 | 0.279 | 0.522 | 1e-148 | |
| 356532642 | 590 | PREDICTED: ankyrin repeat-containing pro | 0.983 | 0.908 | 0.494 | 1e-147 | |
| 356532648 | 739 | PREDICTED: uncharacterized protein LOC10 | 0.966 | 0.713 | 0.505 | 1e-145 | |
| 356498501 | 567 | PREDICTED: uncharacterized protein LOC10 | 0.963 | 0.925 | 0.509 | 1e-144 |
| >gi|225425076|ref|XP_002271486.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 559 bits (1441), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/539 (53%), Positives = 374/539 (69%), Gaps = 32/539 (5%)
Query: 3 RNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFV 62
R +YL +C+PL AA+KG+W TA+ + P + I +G +T LH+AA A+ FV
Sbjct: 49 RYLYLTVCIPLYGAAMKGDWKTAEGIFKMFPPAVRMT--ITQGRDTTLHIAAAAKHVQFV 106
Query: 63 EELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122
EE++K+M+P+DL LQ++ NTA CFA A+G + IA++M+KKNE L ++GG M PL+MA
Sbjct: 107 EEMVKMMEPKDLELQNKYSNTALCFAAASGIVRIAEVMVKKNENLPMIQGGGGMIPLHMA 166
Query: 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGN 182
A+L +M YLY+ ++L P D L TCISTDL+D+AL +L H LAV RD N
Sbjct: 167 ALLGHSEMVRYLYNKT-VHEHLAPGDWVGLLNTCISTDLYDVALDILHHHPALAVERDEN 225
Query: 183 YETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242
ETALH+LARKPSAF+ +Q +H +W + S LL
Sbjct: 226 DETALHLLARKPSAFSGGDQ------LH--------MWNTFIT-------------SPLL 258
Query: 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMA 302
AAELGN FL EL+ SYPDL+ E D++NR+IFHIAVLHR +IFNLIYEIG K+L+
Sbjct: 259 LVAAELGNTVFLTELVGSYPDLIWEADNDNRTIFHIAVLHRRESIFNLIYEIGSMKDLIV 318
Query: 303 TFKDHDQNNMLHLAA-KSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEG 361
+KD + NNMLHLA K+P P R +IVSGAALQM RELLWFKEVEKI+ PT+RE KN +G
Sbjct: 319 PYKDDNDNNMLHLAGRKAPLPQR-NIVSGAALQMQRELLWFKEVEKIMLPTYRERKNKDG 377
Query: 362 KTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIH 421
KTPR+LF+ EH +L++ GE WM+ TA MLVATLIAT++FAAAF+VPGG++ + GIPI
Sbjct: 378 KTPRDLFTKEHKNLMKDGEKWMRGTAAQSMLVATLIATVVFAAAFTVPGGSNQDTGIPIL 437
Query: 422 LRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFISII 481
LR+ F +FA+SD +AL SSS SIL+FLSILTSRYAE DFL+SLP +LM GL LF+SII
Sbjct: 438 LRKKSFMIFAVSDAIALFSSSTSILVFLSILTSRYAEDDFLESLPSRLMFGLITLFVSII 497
Query: 482 NMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIFYSTYHARTITR 540
+MMV F+ TFFL + W + V A VPVTL+ LQYPLL DIF STY +R + R
Sbjct: 498 SMMVTFTITFFLVFGHGFAWAPMLIAVSACVPVTLYFSLQYPLLADIFRSTYGSRFLFR 556
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147860696|emb|CAN81449.1| hypothetical protein VITISV_011174 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 293/567 (51%), Positives = 380/567 (67%), Gaps = 40/567 (7%)
Query: 2 NRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGF 61
+R YLN+C+PL +AALKG+W TAK + E + + I + +T+LH+AA A++T F
Sbjct: 321 DRAFYLNVCIPLYQAALKGDWETAKGIF--EIHPTAVRVRITRNLDTVLHIAAAAKRTHF 378
Query: 62 VEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121
VEE++ LM P DL LQ+ N NTAFCFA AAG++ IA++M+KKN+ L +RG + M PL+M
Sbjct: 379 VEEVVGLMDPNDLELQNENSNTAFCFAAAAGTVRIAEVMVKKNDHLPMIRGNQQMMPLHM 438
Query: 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181
AA+L +M YLY+ +D L ED + TCISTDL+++AL +LE H LA RDG
Sbjct: 439 AALLGHSEMVWYLYNKTNHQD-LKDEDWIGILNTCISTDLYEVALAILESHPKLATIRDG 497
Query: 182 NYETALHVLARKPSAFASRNQ-GLLTRLMH--SALQ-----------------LVKSLWE 221
NYETALH+LARKPSAF+ ++ G+ T ++ S LQ L S ++
Sbjct: 498 NYETALHLLARKPSAFSGESRIGIWTTFINPRSPLQVSTVVIIFLMVIPSNNFLFNSQFQ 557
Query: 222 A------------ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELD 269
+ + DS+ DLIR P L+F AA+LGN FL EL+ SYPDL+ +
Sbjct: 558 SKPLNSSNAFGSRLYNYLDSKIADLIRDPYRLVFVAAKLGNTIFLTELLHSYPDLIWRVX 617
Query: 270 DNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329
RSIFHIA LHR IFNLIYEIG K+++ T++D + NNMLHL K HPS ++I+S
Sbjct: 618 SQTRSIFHIAALHRQDRIFNLIYEIGSIKDMIMTYRDENGNNMLHLVGKLAHPSELNIIS 677
Query: 330 GAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAES 389
GAALQM RELLWFKEVEK++QPT+RE KN +GKTP LF+ EH L++ GE WM+ TA
Sbjct: 678 GAALQMQRELLWFKEVEKLMQPTYREKKNRQGKTPWVLFTEEHRDLMKDGEKWMRETAAQ 737
Query: 390 CMLVATLIATIMFAAAFSVPGGNDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFL 449
MLVATLIAT++F+AAF+VPGG+ PI L VFA+SD +AL +SS SILMFL
Sbjct: 738 SMLVATLIATVVFSAAFTVPGGHSQQTDTPI-----LLMVFAVSDGLALFTSSTSILMFL 792
Query: 450 SILTSRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVTTVL 509
SILTSRYAE DFL SLP +LM GL+ALF+SII MMV F+ TFF+ YH WV + +
Sbjct: 793 SILTSRYAEQDFLHSLPSRLMFGLTALFVSIITMMVTFTITFFIVYHHGFAWVPILIALF 852
Query: 510 AAVPVTLFVLLQYPLLNDIFYSTYHAR 536
A PV+LF LQYPLL D+ STY +R
Sbjct: 853 ATGPVSLFASLQYPLLADVINSTYGSR 879
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359472754|ref|XP_002276402.2| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1432), Expect = e-155, Method: Compositional matrix adjust.
Identities = 296/558 (53%), Positives = 383/558 (68%), Gaps = 21/558 (3%)
Query: 1 ENRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTG 60
E R+ L V L AAL G+W +AK L +P+++ A I + ET LH+AAGAR T
Sbjct: 166 EIRSNGLKAYVLLCLAALNGDWKSAKAFL-ESNPQAVR-ARITRRSETALHIAAGARHTR 223
Query: 61 FVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120
FVEEL+KLMKP+DL LQ++ GNTA CFA A+G IA++M+ KN L +RG + +TPLY
Sbjct: 224 FVEELVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLY 283
Query: 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARD 180
MAA++ +DM YLY +DNLT ED+ L I+ +L D+AL +L + LA+ARD
Sbjct: 284 MAALVGHKDMVRYLYS-VTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARD 342
Query: 181 GNYETALHVLARKPSAFASRNQ-GLLTRLMHS----------------ALQLVKSLWEAI 223
GN +TALHVLARKP AF S +Q G+ R ++S AL+LV+ LW+ I
Sbjct: 343 GNGDTALHVLARKPLAFYSGSQLGIWHRCIYSFPGFKSVYDKKLMHIQALELVQQLWDKI 402
Query: 224 LKRD-DSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282
L D D + +LIR PS LLF AAELG EF+ LI SYPDL+ +++D +++IFH+AV H
Sbjct: 403 LSLDHDPKIGELIRTPSRLLFTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAH 462
Query: 283 RHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWF 342
R IFNLIYEIG K+ +A +KD NNMLHLA K +R+ I SGAA Q+ REL WF
Sbjct: 463 RQEKIFNLIYEIGAHKDYIAAYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWF 522
Query: 343 KEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMF 402
KEVEKI+QP++ EMKN +G+TP+ LF+ EH L+R GE WMK+TA SCM+VATLIAT+MF
Sbjct: 523 KEVEKIIQPSYTEMKNEQGRTPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMF 582
Query: 403 AAAFSVPGGNDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFL 462
AAAFSVPGGND++ G PI L + F VFA+SD +AL SS+ SIL+FLSILTSRYAE DFL
Sbjct: 583 AAAFSVPGGNDDDTGRPIFLTKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFL 642
Query: 463 KSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQY 522
+SLP +L+IGL+ LFIS+ MM+AF T F+ L WV ++A VPVTLF LL++
Sbjct: 643 ESLPNRLIIGLATLFISVATMMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKF 702
Query: 523 PLLNDIFYSTYHARTITR 540
PL D+ Y + I R
Sbjct: 703 PLFIDMISHRYRSSIIFR 720
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483665|ref|XP_003632996.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 284/547 (51%), Positives = 366/547 (66%), Gaps = 24/547 (4%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AAL G+W A+ + E + A I + ET LH+AAGAR FVE L+++M P
Sbjct: 207 PLYLAALSGDWDVAERIF--ESDHQAVRARITRAQETPLHIAAGARHLTFVENLVRMMTP 264
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMA 131
DL L+++ GNTA CFA +G IA++M+ KN RL +RG E TPL+MA +L R+M
Sbjct: 265 ADLALRNKVGNTALCFAAVSGVTKIAEVMVNKNNRLPLIRGSEGATPLHMATLLGHREMV 324
Query: 132 LYLYDDAKA-----KDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA 186
YLY+ + + LT ED + L I++DL D+ALK+++ H +A AR N ETA
Sbjct: 325 WYLYNKTDSNRLTDSNRLTDEDHHGLLIAAITSDLFDVALKIVQKHPKIATARGRNGETA 384
Query: 187 LHVLARKPSAFASRNQ-GLLTR---------------LMH-SALQLVKSLWEAILKRDDS 229
LH+LARKPSA+ S +Q G L R LMH AL+LVK LW +L ++
Sbjct: 385 LHILARKPSAYQSGSQLGFLQRCIYAFPFIKVVYDQKLMHIQALELVKCLWSEVLLMNEL 444
Query: 230 EFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFN 289
+ +LIR PS LLF AAELG EFL ELI +YPDL+ ++D +RSIFHIAV+HR +FN
Sbjct: 445 QVGELIRTPSRLLFTAAELGIVEFLIELIHAYPDLIWKVDTQSRSIFHIAVVHRQEKVFN 504
Query: 290 LIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIV 349
LI+EIG K+L+A+++D + NNMLHLA K R+ SGAALQ+ REL WFKEVEKIV
Sbjct: 505 LIHEIGALKDLIASYRDENNNNMLHLAGKLAPSDRLKTDSGAALQLRRELHWFKEVEKIV 564
Query: 350 QPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVP 409
QP +RE++NSEGKTP+ LF EH L+R GE WMK+TA SCMLVATLIAT+MFAA F+VP
Sbjct: 565 QPLYREIRNSEGKTPQTLFMEEHKVLVREGEKWMKDTAASCMLVATLIATVMFAAFFTVP 624
Query: 410 GGNDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKL 469
GG++ N GIPI L+ F VFA+SD ++ SS+ SILMFLSILTSRYAE DFL SLP +L
Sbjct: 625 GGDNGNTGIPIFLKRRSFTVFAVSDALSFVSSAASILMFLSILTSRYAEEDFLHSLPNRL 684
Query: 470 MIGLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIF 529
IGL LFIS+ MM+AF T FL L+ ++A +PV+LF LLQ+PL D+
Sbjct: 685 TIGLGTLFISVATMMIAFCATLFLVLGHGLHQAKIPIALVACIPVSLFALLQFPLFADMV 744
Query: 530 YSTYHAR 536
TY +R
Sbjct: 745 SCTYGSR 751
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558266|ref|XP_003547428.1| PREDICTED: uncharacterized protein LOC100814409 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 281/549 (51%), Positives = 375/549 (68%), Gaps = 13/549 (2%)
Query: 1 ENRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTG 60
E R+ YL CVPL KAALKG+W AK +L ++DP ++L + I KG+ T+LH+A GA
Sbjct: 33 EARHRYLTQCVPLHKAALKGDWKEAKKIL-DQDP-TLLKSAITKGWATVLHIAVGANHEC 90
Query: 61 FVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120
FVEEL+KL+ EDL L D GNTAFCFA A G++HIA+IM KNE L T+RGGE +TPL+
Sbjct: 91 FVEELVKLLSREDLELLDDKGNTAFCFAAAVGNVHIAEIMRIKNESLPTIRGGEGVTPLH 150
Query: 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARD 180
+A + + +M YL+D K ++ L +D LF C+++ L++LAL++L LA AR
Sbjct: 151 LAVLQGRSEMTRYLFD--KTREILYDDDWITLFLICVNSGLYELALEMLNQRESLAFARG 208
Query: 181 GNYETALHVLARKPSAFASRNQGLLTR-LMH--------SALQLVKSLWEAILKRDDSEF 231
NYETALHVLARKP R+ + L+H L+L + +W+ L DDSE
Sbjct: 209 DNYETALHVLARKPLNCGCRSPLRYPKHLLHLCKNMKDPPVLKLTRRIWDIFLTLDDSEM 268
Query: 232 TDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLI 291
D IR+PS + F AAE GNFEFL+ ++ +YPDL+ EL+ RSI H+A LHRHA+IFNLI
Sbjct: 269 MDAIREPSQVTFIAAEEGNFEFLSVIMSTYPDLIWELNTMGRSIIHVAALHRHASIFNLI 328
Query: 292 YEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQP 351
+EIG +K+ + TF D + + +LH A R+++VSGAA QM EL WF+EV+KI+ P
Sbjct: 329 HEIGPSKDFVLTFLDDEGSTLLHSVAVIAPTDRLNVVSGAAFQMMLELTWFEEVKKIMLP 388
Query: 352 TFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGG 411
+F EM N EG PRELF+ +H LL+ GE WMK TA SCM+V+TLIAT +F+AAFSVPGG
Sbjct: 389 SFVEMPNYEGIIPRELFTNQHEDLLKKGESWMKRTASSCMVVSTLIATGVFSAAFSVPGG 448
Query: 412 NDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMI 471
D+ G P +L++ LF VFA+SD +AL+ S+ S L+FLSIL SRYAE DFL+SLP KL+
Sbjct: 449 IDDKLGSPNYLKKPLFTVFALSDALALTLSTTSTLIFLSILISRYAEEDFLRSLPFKLIF 508
Query: 472 GLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIFYS 531
GL +LF SII+MMVAFS+TFF+AY+ WV V P+ LF+ LQ+ L +DI Y
Sbjct: 509 GLVSLFFSIISMMVAFSSTFFIAYYHAKTWVPITIAVFVCFPIFLFICLQFRLWHDIMYL 568
Query: 532 TYHARTITR 540
Y ++ R
Sbjct: 569 HYICGSLFR 577
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147784800|emb|CAN68568.1| hypothetical protein VITISV_029434 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 540 bits (1392), Expect = e-151, Method: Compositional matrix adjust.
Identities = 294/593 (49%), Positives = 382/593 (64%), Gaps = 64/593 (10%)
Query: 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEE 64
Y+ +C+ AAL G+W +AK L +P+++ A I + ET LH+AAGAR T FVEE
Sbjct: 174 AYVLLCL----AALNGDWKSAKAFL-ESNPQAVR-ARITRRSETALHIAAGARHTRFVEE 227
Query: 65 LLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124
L+KLMKP+DL LQ++ GNTA CFA A+G IA++M+ KN L +RG + +TPLYMAA+
Sbjct: 228 LVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAAL 287
Query: 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184
+ +DM YLY +DNLT ED+ L I+ +L D+AL +L + LA+ARDGN +
Sbjct: 288 VGHKDMVRYLYS-VTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDGNGD 346
Query: 185 TALHVLARKPSAFAS---RNQGLL------------------------------------ 205
TALHVLARKP AF S R +G+
Sbjct: 347 TALHVLARKPLAFYSGRARQRGVFLLYSATKGEVRLCLNVIRSLCSASTHVFYXFNSQTY 406
Query: 206 ----------------TRLMH-SALQLVKSLWEAILKRD-DSEFTDLIRKPSHLLFDAAE 247
+LMH AL+LV+ LW+ IL D D + +LIR PS LLF AAE
Sbjct: 407 FGLLPHAVPGFKSVYDKKLMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLLFTAAE 466
Query: 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDH 307
LG EF+ LI SYPDL+ +++D +++IFH+AV HR IFNLIYEIG K+ +A +KD
Sbjct: 467 LGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIAAYKDE 526
Query: 308 DQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPREL 367
NNMLHLA K +R+ I SGAA Q+ REL WFKEVEKI+QP++ EMKN +G+TP+ L
Sbjct: 527 KNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGRTPQIL 586
Query: 368 FSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIHLRETLF 427
F+ EH L+R GE WMK+TA SCM+VATLIAT+MFAAAFSVPGGND++ G PI L + F
Sbjct: 587 FTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFLTKKSF 646
Query: 428 QVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFISIINMMVAF 487
VFA+SD +AL SS+ SIL+FLSILTSRYAE DFL+SLP +L+IGL+ LFIS+ MM+AF
Sbjct: 647 LVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVATMMIAF 706
Query: 488 STTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIFYSTYHARTITR 540
T F+ L WV ++A VPVTLF LL++PL D+ Y + I R
Sbjct: 707 CATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 759
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297737987|emb|CBI27188.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 281/538 (52%), Positives = 370/538 (68%), Gaps = 19/538 (3%)
Query: 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEE 64
Y+ +C+ AAL G+W +AK L +P+++ A I + ET LH+AAGAR T FVEE
Sbjct: 174 AYVLLCL----AALNGDWKSAKAFL-ESNPQAVR-ARITRRSETALHIAAGARHTRFVEE 227
Query: 65 LLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124
L+KLMKP+DL LQ++ GNTA CFA A+G IA++M+ KN L +RG + +TPLYMAA+
Sbjct: 228 LVKLMKPDDLALQNKVGNTALCFAAASGITRIAEVMVNKNRELPMIRGSKGVTPLYMAAL 287
Query: 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184
+ +DM YLY +DNLT ED+ L I+ +L D+AL +L + LA+ARDG
Sbjct: 288 VGHKDMVRYLYS-VTEEDNLTKEDRIGLLVAAITANLFDVALHMLHEDPELAMARDG--- 343
Query: 185 TALHVLARKPSAFASRNQGLLTRLMH-SALQLVKSLWEAILKRD-DSEFTDLIRKPSHLL 242
++HV+ S + + LMH AL+LV+ LW+ IL D D + +LIR PS LL
Sbjct: 344 ASIHVIPGFKSVYDKK-------LMHIQALELVQQLWDKILSLDHDPKIGELIRTPSRLL 396
Query: 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMA 302
F AAELG EF+ LI SYPDL+ +++D +++IFH+AV HR IFNLIYEIG K+ +A
Sbjct: 397 FTAAELGIVEFITVLIRSYPDLIWKVNDQSQTIFHVAVAHRQEKIFNLIYEIGAHKDYIA 456
Query: 303 TFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGK 362
+KD NNMLHLA K +R+ I SGAA Q+ REL WFKEVEKI+QP++ EMKN +G+
Sbjct: 457 AYKDEKNNNMLHLAGKLAPSNRLKIDSGAAFQLQRELHWFKEVEKIIQPSYTEMKNEQGR 516
Query: 363 TPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIHL 422
TP+ LF+ EH L+R GE WMK+TA SCM+VATLIAT+MFAAAFSVPGGND++ G PI L
Sbjct: 517 TPQILFTEEHKDLVREGEKWMKDTASSCMVVATLIATVMFAAAFSVPGGNDDDTGRPIFL 576
Query: 423 RETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFISIIN 482
+ F VFA+SD +AL SS+ SIL+FLSILTSRYAE DFL+SLP +L+IGL+ LFIS+
Sbjct: 577 TKKSFLVFAISDALALFSSATSILIFLSILTSRYAEEDFLESLPNRLIIGLATLFISVAT 636
Query: 483 MMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIFYSTYHARTITR 540
MM+AF T F+ L WV ++A VPVTLF LL++PL D+ Y + I R
Sbjct: 637 MMIAFCATLFIVLGPELVWVANPMALVACVPVTLFPLLKFPLFIDMISHRYRSSIIFR 694
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532642|ref|XP_003534880.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/550 (49%), Positives = 378/550 (68%), Gaps = 14/550 (2%)
Query: 1 ENRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTG 60
E+R+ YL CVPL KAAL+G+W AK +L ++DP ++L + I KG+ T+LH+A GA
Sbjct: 38 ESRHRYLTQCVPLHKAALEGDWKEAKKIL-DQDP-ALLNSAITKGWATVLHIAVGANHES 95
Query: 61 FVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120
FVEELLKLM EDL LQD GNTAFCFA A G++HIA+ M +KN L +RGGE +TPL+
Sbjct: 96 FVEELLKLMSREDLELQDIKGNTAFCFAAAVGNVHIAERMRRKNASLPMIRGGEGVTPLH 155
Query: 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARD 180
+A + + +MA YL+D K ++ L +D +F C+++ L++LAL++L LA AR
Sbjct: 156 LAVLQGRSEMAWYLFD--KTRETLYDDDWFQVFLICVNSRLYELALEMLNQKESLAFARG 213
Query: 181 GNYETALHVLARKPSAFASRNQGLLTR-LMH--------SALQLVKSLWEAILKRDDSEF 231
N ETALHVLARKP R+ + ++H L+L + +W+ L DDS+
Sbjct: 214 DNDETALHVLARKPLDCGCRSPLRYPKHVLHLCKNMKDPPVLKLTRRVWDIFLTLDDSKM 273
Query: 232 TDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLI 291
IR+PS + F AAE+GNFEFL+ ++ +YPDL+ EL+ +SI H+A LHRHA+IFNLI
Sbjct: 274 MTAIREPSQVTFIAAEVGNFEFLSVIMSTYPDLIWELNTMGQSIIHVAALHRHASIFNLI 333
Query: 292 YEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQP 351
+EIG +K+L+ TF D + + +LH A+ R+++VSGAALQM EL WF+EV+K +QP
Sbjct: 334 HEIGPSKDLLLTFWDDEGSTLLHSVAEIAPTDRLNVVSGAALQMMLELTWFEEVKKNMQP 393
Query: 352 TFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGG 411
++ E N EG PRELF+ +H LL+ GE WMK TA SCM+V+TLIAT +F+AAFSVPGG
Sbjct: 394 SYIERPNHEGIVPRELFTEKHKELLKKGESWMKRTASSCMVVSTLIATGVFSAAFSVPGG 453
Query: 412 NDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMI 471
++ G P +L++ LF VFA+SD +AL+ S+ S L+FLSIL SRYAE DFL+SLP KL+
Sbjct: 454 TKDDSGSPNYLKKHLFTVFAISDALALTLSTASTLIFLSILISRYAEEDFLRSLPFKLIF 513
Query: 472 GLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVT-TVLAAVPVTLFVLLQYPLLNDIFY 530
GL +LF+SI++MM AFS+ FF+ Y+ WV +T V P+ LF+ LQ+ L +DI Y
Sbjct: 514 GLVSLFLSIVSMMGAFSSAFFITYYHAKTWVVPITIAVFVLFPILLFIYLQFRLWHDIVY 573
Query: 531 STYHARTITR 540
S Y ++ R
Sbjct: 574 SHYMCGSLFR 583
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356532648|ref|XP_003534883.1| PREDICTED: uncharacterized protein LOC100814269 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 281/556 (50%), Positives = 377/556 (67%), Gaps = 29/556 (5%)
Query: 7 LNICVPLQKAALKGNWPTAKHLL----GNEDPRSILCAGIAKGYETLLHLAAGARQTGFV 62
L++ +PL +A+LKG+W A L G E+ A I++G+ET LH++AGAR+T FV
Sbjct: 191 LHMYLPLYRASLKGDWEKANEFLNLHPGAEN------AMISRGWETALHISAGARRTKFV 244
Query: 63 EELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122
EEL+K M+ DL +Q+++ NTA CFA A+G IAK+M+ +N L +RG E +TPLY+A
Sbjct: 245 EELVKRMRTTDLEIQNKDNNTALCFAAASGVTKIAKLMVDRNRNLPVIRGSEGVTPLYIA 304
Query: 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGN 182
+L QRDM YLY + L ED +L ISTDL+D AL +LE LA N
Sbjct: 305 TLLGQRDMVWYLYS-VTNHEILKTEDYFSLLIAAISTDLYDFALHVLECQPQLATYHGLN 363
Query: 183 YETALHVLARKPSAFASRNQ-GLLTRLMH----------------SALQLVKSLWEAILK 225
ETALHVLA+KPS+F S Q G+ R ++ AL+LV+ LWE I+
Sbjct: 364 GETALHVLAKKPSSFTSGIQLGIWERCIYPLPGFEAVQKKKTLNAQALKLVQRLWELIVS 423
Query: 226 RDDSEFTDLIRKP-SHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284
D+ + DLI+ P S LF AAE G E + EL+ SYPDL+ ++D NRS+FHIA++HR
Sbjct: 424 SDEIQHGDLIKSPLSRPLFIAAESGIPEIVIELLYSYPDLLWKVDGQNRSLFHIAIMHRQ 483
Query: 285 ANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKE 344
IFNLIY+IG K+L+ +++D++ +N+LHLA K ++ +VSGAALQM RELLWFKE
Sbjct: 484 EKIFNLIYDIGAHKDLITSYRDNNNHNILHLAGKLAPSEQLHVVSGAALQMQRELLWFKE 543
Query: 345 VEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAA 404
VEKI+QP F+E+K+S+G+TP+ LF+ EH L + GE W+KNTA SCMLVATLI T+MFAA
Sbjct: 544 VEKIIQPLFKEIKDSQGRTPQMLFTEEHKELAKEGEKWLKNTASSCMLVATLITTVMFAA 603
Query: 405 AFSVPGGNDNNKGIPIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKS 464
F+VPGGN+NN G PI + T F+VFA+SD +AL SS IS+LMFLSILTSRYA+ DFL S
Sbjct: 604 IFTVPGGNNNNNGYPIFMHTTSFKVFALSDALALFSSVISVLMFLSILTSRYAQEDFLVS 663
Query: 465 LPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPL 524
LP +L +G++ LF SII M++AF TFF+ +L W+ TT++A +P LF LLQ+PL
Sbjct: 664 LPRRLSVGIATLFFSIITMLIAFGATFFIVLGHQLAWIVIPTTLVACIPAILFALLQFPL 723
Query: 525 LNDIFYSTYHARTITR 540
L D TY A +R
Sbjct: 724 LVDTISCTYGAGVFSR 739
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498501|ref|XP_003518089.1| PREDICTED: uncharacterized protein LOC100784675 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 518 bits (1334), Expect = e-144, Method: Compositional matrix adjust.
Identities = 276/542 (50%), Positives = 369/542 (68%), Gaps = 17/542 (3%)
Query: 1 ENRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKG-YETLLHLAAGARQT 59
E++ YL CVPL KA+LKG+W A+ LL + S+L I KG + TLLH+A GA +
Sbjct: 34 EDKGRYLTQCVPLHKASLKGDWKEARKLLDQDG--SLLKTAITKGGWATLLHIAVGANRV 91
Query: 60 GFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119
FVEELLKLM+PE+L LQD GNTAFCFA A G++ IA++M + N L T+RGG +TPL
Sbjct: 92 HFVEELLKLMQPEELELQDHKGNTAFCFAAAVGNVQIAEMMERINASLPTIRGGGGLTPL 151
Query: 120 YMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179
++A + +++MA +L+ K K+ D LF CI + L+DLAL++L + LA AR
Sbjct: 152 HLAVLQGRKEMAWHLF--PKTKEIFEEVDWTILFINCIKSGLYDLALEMLNEKDMLAYAR 209
Query: 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPS 239
+T LHVLAR P + L+LVK +W+ +L DD + I +PS
Sbjct: 210 GEENQTGLHVLARTPGKKDT-----------PILKLVKKMWDIVLSLDDQTMMETISEPS 258
Query: 240 HLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299
++F AAE+GNFEFL+ ++ +YPDL+ ELD RSI HIAVLHRHA+IFNLI+EIG KE
Sbjct: 259 QVIFIAAEVGNFEFLSVVLSTYPDLIWELDSTGRSIIHIAVLHRHASIFNLIHEIGPMKE 318
Query: 300 LMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNS 359
++ TF D +NN+LH AA+ P R++ VSGAALQM EL WF+EV+KI+ P+ E +NS
Sbjct: 319 VILTFNDDQENNLLHYAARQAPPDRLNAVSGAALQMMLELSWFEEVKKIMLPSSIEKRNS 378
Query: 360 EGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNK-GI 418
G PR+LF++EH LL GE WMK TA+SCM+V+TLI T +F AAFSVPGGN+++K G
Sbjct: 379 NGIIPRQLFTMEHEELLEKGESWMKRTAKSCMVVSTLITTGVFTAAFSVPGGNNDDKEGS 438
Query: 419 PIHLRETLFQVFAMSDVMALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFI 478
P +L + F +FA+SD +A+ SSS SIL+FLSIL SRYAE DFLKSLPLKL+ L ALFI
Sbjct: 439 PNYLGKPTFLIFALSDSIAMISSSASILIFLSILISRYAEEDFLKSLPLKLISALLALFI 498
Query: 479 SIINMMVAFSTTFFLAYHDRLNWVTTVTTVLAAVPVTLFVLLQYPLLNDIFYSTYHARTI 538
SII+MMVAFS+ FF+ Y+ N V + LA +P+ +F+ LQ+ L +DI Y Y +
Sbjct: 499 SIISMMVAFSSAFFITYYYGSNGVPIFISALAFIPIPVFIFLQFRLWSDILYLAYMCSFL 558
Query: 539 TR 540
R
Sbjct: 559 FR 560
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 545 | ||||||
| TAIR|locus:2165174 | 347 | AT5G35810 "AT5G35810" [Arabido | 0.590 | 0.927 | 0.417 | 1.5e-65 | |
| TAIR|locus:2080240 | 574 | AT3G54070 "AT3G54070" [Arabido | 0.755 | 0.717 | 0.369 | 1.6e-61 | |
| TAIR|locus:2180228 | 625 | AT5G04690 "AT5G04690" [Arabido | 0.829 | 0.723 | 0.344 | 1.5e-60 | |
| TAIR|locus:2175413 | 669 | AT5G04700 "AT5G04700" [Arabido | 0.644 | 0.524 | 0.368 | 2.1e-52 | |
| TAIR|locus:2175448 | 603 | AT5G04730 "AT5G04730" [Arabido | 0.601 | 0.543 | 0.355 | 6.8e-49 | |
| TAIR|locus:2165194 | 282 | AT5G35830 [Arabidopsis thalian | 0.273 | 0.528 | 0.388 | 6e-23 | |
| TAIR|locus:2128781 | 677 | AT4G03460 "AT4G03460" [Arabido | 0.833 | 0.670 | 0.228 | 1.1e-12 | |
| TAIR|locus:2020833 | 616 | AT1G03670 "AT1G03670" [Arabido | 0.790 | 0.699 | 0.210 | 1.5e-11 | |
| ZFIN|ZDB-GENE-060526-136 | 586 | ankdd1b "ankyrin repeat and de | 0.506 | 0.470 | 0.254 | 5.8e-09 | |
| TAIR|locus:2046628 | 601 | AT2G24600 "AT2G24600" [Arabido | 0.416 | 0.377 | 0.270 | 9.3e-09 |
| TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 137/328 (41%), Positives = 193/328 (58%)
Query: 212 ALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN 271
A +V+ LW ++K E + + LLFDAA+ GN E L LI SYPDL+ +D
Sbjct: 5 AHMVVEELWSFVIKLPVEEISQFVGSSPMLLFDAAQSGNLELLLILIRSYPDLIWTVDHK 64
Query: 272 NRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN-NMLHLAAKSPHPSRVSIVSG 330
N+S+FHIA ++RH IFN IYE+G K+L+A +K+ + N N+LHL A+ P P+R+ +VSG
Sbjct: 65 NQSLFHIAAINRHEKIFNRIYELGAIKDLIAMYKEKESNDNLLHLVARLPPPNRLQVVSG 124
Query: 331 AALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKNTAESC 390
AALQM RE+LW+K V++IV + + KN + + +LF+ EH +L + GE WMK TA +C
Sbjct: 125 AALQMQREILWYKAVKEIVPRVYIKTKNKKEEVAHDLFTKEHDNLRKEGEKWMKETATAC 184
Query: 391 MLVATLIATIMFAAAFSVPGGNDNNK-----GIPIHLRETLFQVFAMSDVMAXXXXXXXX 445
+LV+TLIAT++FAAAF++PGGND + G P +E F+VF +SD +A
Sbjct: 185 ILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFRKEFWFEVFIISDSVALLSSVTSI 244
Query: 446 XXXXXXXXXRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWXXXX 505
RYAE F +LP KLM+GL ALF+SII+M++AF+ T L W
Sbjct: 245 MIFLSILTSRYAEASFQTTLPTKLMLGLLALFVSIISMVLAFTATLILIRDQEPKWSLIL 304
Query: 506 XXXXXXXXXXXXXXXQYPLLNDIFYSTY 533
+ L D S Y
Sbjct: 305 LVYVASATALSFVVLHFQLWFDTLRSAY 332
|
|
| TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 161/436 (36%), Positives = 240/436 (55%)
Query: 80 NGNTAFCFAVAAGSIHIAKIMLKKNERL-LTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138
N A AVAA + +L++ + L+++ + TPL AA L + A L +
Sbjct: 84 NSEIALHIAVAAKHKDFVRNLLREMDPPDLSLKNKDGNTPLSFAAALGDIETAEMLINMI 143
Query: 139 KAKDNLTPED-QNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKP--S 195
+ +++ E + + H ++ L + + D Y H +
Sbjct: 144 RDLPDISNEKTMTPIHIAALYG--HGEMVQYLFSKTSIKDLNDQQYLNLFHTMISADIYG 201
Query: 196 AFASRNQGLLTR--LMHSALQLVKSLWEAI--LKRDDSEFT-----DLIRK--PSHLLFD 244
FA +L R L L L + +A+ L R S + +L ++ S LLFD
Sbjct: 202 VFADVPLWMLERVDLYRKELALYPNSNKALHLLARKTSAISHKSQLNLFQQVASSWLLFD 261
Query: 245 AAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATF 304
AAELGN E L LI S+ DL+ +D+NNR++FH+A L+RH NIF+LIYE+G K+L+A++
Sbjct: 262 AAELGNVEILVILIRSHLDLLWIVDNNNRTLFHVAALYRHENIFSLIYELGGIKDLIASY 321
Query: 305 KD-HDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKT 363
K+ ++ +LHL A+ P +R + SGAAL M +ELLWFK V++IV ++ E KN++G+
Sbjct: 322 KEKQSKDTLLHLVARLPPMNRQQVGSGAALHMQKELLWFKAVKEIVPRSYIETKNTKGEL 381
Query: 364 PRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGND------NNKG 417
++F+ +H +L + GE WMK TA +CML ATLIAT++FAAA ++PGGND N G
Sbjct: 382 AHDIFTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGGNDDSGDKANTLG 441
Query: 418 IPIHLRETLFQVFAMSDVMAXXXXXXXXXXXXXXXXXRYAETDFLKSLPLKLMIGLSALF 477
P + LF +F +SD +A RYAE DF LP KLM GLSALF
Sbjct: 442 FPNFRKRLLFDIFTLSDSVALFSSMMSIVIFLSIFTSRYAEEDFRYDLPTKLMFGLSALF 501
Query: 478 ISIINMMVAFSTTFFL 493
ISII+M++AF+ + L
Sbjct: 502 ISIISMILAFTFSMIL 517
|
|
| TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
Identities = 165/479 (34%), Positives = 238/479 (49%)
Query: 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAK 141
NT +G++ IA+ ++ KN +LL + G P+ +A Q +MA YLY+ +
Sbjct: 148 NTPLTVVAVSGNMEIAEALVAKNPKLLEIPGNNGEIPVVVAVENTQMEMARYLYNRTPVQ 207
Query: 142 DNLTPEDQNA--LFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA-LHVLARKPSAFA 198
L + + LF I D+AL L LAV + E+ + VLA KP F
Sbjct: 208 VLLEKDGFHGILLFLNAIYYKKLDMALDLFNKSRRLAVTKHLRIESVPIIVLASKPDLFP 267
Query: 199 SRNQGLLTR---------------LMH-SALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242
G + + +MH A +L+K + E L E ++ + + LL
Sbjct: 268 DTLMGKVLKCLSKCIGIDEVYRLKVMHLQAKKLLKGISEETLALGLKERSESVDEA--LL 325
Query: 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMA 302
F A GN +FL E+I + +L+ + ++F+ AV R +F+L+Y +G K L
Sbjct: 326 F-AVRYGNVDFLVEMIKNNSELLWSTGTS--TLFNTAVQVRQEKVFSLLYGLGDRKYLFL 382
Query: 303 TFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGK 362
KD D N++LHLA P +++ V A LQM REL WFKE+E+IV E N+E
Sbjct: 383 ADKDSDGNSVLHLAGYPPPNYKLATVVSATLQMQRELQWFKEMERIVPAIENERVNTENL 442
Query: 363 TPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKG-IPIH 421
TP E+F EH ++ E WMK+TA SC LVA LI T+ FAA F+VPGG D+N G P H
Sbjct: 443 TPIEIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFH 502
Query: 422 LRETLFQVFAMSDVMAXXXXXXXXXXXXXXXXXRYAETDFLKSLPLKLMIGLSALFISII 481
E +F +F +SD+++ RYA DFL SLP ++ GLS LF+SI
Sbjct: 503 RHERIFVIFIVSDLISCFAACTSVLIFLGILTARYAFDDFLFSLPANMIAGLSTLFVSIA 562
Query: 482 NMMVAFSTTFFLAYHDRLNWXXXXXXXXXXXXXXXXXXXQYPLLNDIFYSTYHARTITR 540
M+VAFS+ F ++D W QYPLL ++ +STY R R
Sbjct: 563 AMLVAFSSALFTIFNDP--WIVAPTIFFACFPALLFVMIQYPLLKELIFSTYGKRIFDR 619
|
|
| TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
Identities = 132/358 (36%), Positives = 192/358 (53%)
Query: 179 RDGNYETALHVLARKPSAFASRNQGLLTRLMH-SALQLVKSLWEAILKRDDSEFTDLIRK 237
RD T + L + S + ++ ++MH A +L+ + E L E ++ + +
Sbjct: 303 RD-QQNTLMRKLLKGLSKWTGIDEVYRLKVMHLQAKKLLLGISEETLALGLKERSETVDE 361
Query: 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRS-IFHIAVLHRHANIFNLIYEIGF 296
LLF A GN +FL E+I + +L+ ++ S +F +AV R +F+L+Y +
Sbjct: 362 A--LLF-AVRYGNVDFLVEMIRNNSELLWSTRTSSSSTLFLLAVEFRQEKVFSLLYGLDD 418
Query: 297 TKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREM 356
K L+ KD D N +LHLA PS++S V GA LQ+ REL WFKEVE+I +E
Sbjct: 419 RKYLLLADKDCDGNGVLHLAGFPSPPSKLSSVVGAPLQLQRELQWFKEVERIAPEIEKER 478
Query: 357 KNSEGKTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGG-NDNN 415
N+E +TP E+F+ EH L + E WMK+TA SC LVA LI T+ FAA F+VPGG +DN+
Sbjct: 479 VNTEEQTPIEIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNS 538
Query: 416 KGIPIHLRETLFQVFAMSDVMAXXXXXXXXXXXXXXXXXRYAETDFLKSLPLKLMIGLSA 475
KG P HLR+ F +F +SD+++ RY+ DFL LP K++ GLS
Sbjct: 539 KGKPFHLRDRRFIIFIVSDLISCFASCTSVLIFLGILTARYSFDDFLVFLPTKMIAGLSI 598
Query: 476 LFISIINMMVAFSTTFFLAYHDRLNWXXXXXXXXXXXXXXXXXXXQYPLLNDIFYSTY 533
LF+SI M++AFS+ F W QYPLL ++ +STY
Sbjct: 599 LFVSIAAMLIAFSSALFTMMGKEGKWIVAPTILFACLPALLFVLLQYPLLKEMIFSTY 656
|
|
| TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 479 (173.7 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
Identities = 119/335 (35%), Positives = 172/335 (51%)
Query: 210 HSALQ-LVKSLWEAILKRDDSEFTDLIRKPS--HLLFDAAELGNFEFLAELICSYPDLVH 266
HS Q L+K + ++ RD ++ K + L +AA+ GN +F E+I L+
Sbjct: 265 HSQAQKLLKQMCTSL--RDIMAKNEIRWKETVYEALLEAAKSGNRDFFIEIIKCNSQLLW 322
Query: 267 ELDDNN-RSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRV 325
L+ + R++F +AV + IFNLI+ + K + D NN+LH+A + P ++
Sbjct: 323 ILNPTSGRNLFQLAVEFKKEKIFNLIHGLDDRKVTLLRSYDKGNNNILHIAGRLSTPDQL 382
Query: 326 SIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRSGELWMKN 385
S +SGAAL+M RE WFKEVE +V KN + KTPR++F H L + GE WMK
Sbjct: 383 SKISGAALKMQRESQWFKEVESLVSEREVVQKNKDNKTPRQIFEHYHEHLRKEGEEWMKY 442
Query: 386 TAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIHLRETLFQVFAMSDVMAXXXXXXXX 445
TA +C VA LIAT+ F A F+VPGG D G P+ L + F+ F +D +A
Sbjct: 443 TATACSFVAALIATVTFQAIFTVPGGIDGTSGSPLILNDLHFRAFIFTDTLAFFASCISV 502
Query: 446 XXXXXXXXXRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRLNWXXXX 505
RY+ DF+ SLP K+++G S LFISI +M+VAF T+ + +
Sbjct: 503 LIFLSILTSRYSFDDFIVSLPRKMILGQSILFISIASMLVAFITSLSASMRHKPA-LVYP 561
Query: 506 XXXXXXXXXXXXXXXQYPLLNDIFYSTYHARTITR 540
QYPLL ++ STY R R
Sbjct: 562 LKPLASFPSLLFLMLQYPLLKEMISSTYGKRLFYR 596
|
|
| TAIR|locus:2165194 AT5G35830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 271 (100.5 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 59/152 (38%), Positives = 92/152 (60%)
Query: 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
V L +AALKG+W A ++ + + I+ I ET+LH+A A+ GFV LL ++
Sbjct: 89 VQLYQAALKGDWKAANGIIIEQ--KYIIYQKITSKSETVLHIAVAAKHEGFVRNLLGSLE 146
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDM 130
DL L++ +GNTA CFA A+G + IAK++++KN+ L +RGG TP++MAA+ +M
Sbjct: 147 SNDLALRNVDGNTALCFAAASGVVEIAKMLIEKNKDLPMIRGGGKTTPIHMAALFGHGEM 206
Query: 131 ALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162
YLY + + ++ E N LF IS D++
Sbjct: 207 VKYLYKNTRFREFNDEEFVN-LFHAVISADIY 237
|
|
| TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 201 (75.8 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 119/521 (22%), Positives = 209/521 (40%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE 72
L AA G+ ++L N P +L + G E LH+AAGA VE L+ +K
Sbjct: 135 LHLAAAAGHTDLVCYIL-NAYP-GLLMKSNSMG-EVALHVAAGAGHLAVVEALVSFIKDI 191
Query: 73 DLT----------LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122
+DR+ + A ++ + +A ++ + L + + ++PLY+A
Sbjct: 192 SCNKPGVAKKIYFAKDRHQDNALHVSLKRKHLKVASCLVCAEQSLSFVANNDGVSPLYLA 251
Query: 123 AVLAQRDMALYLYDDAKAKDNLTPE-----DQNALFFTCISTDLHDLALKLLEDHSGLAV 177
Q D+A ++ + + T ++ + D+ + +L + + L
Sbjct: 252 VEAGQADLAKTMWQHSNNGSSSTSTLASKIGGRSIVHGAMKARRKDILVAILSEDASLIN 311
Query: 178 ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRK 237
RD T L A +G L+ AL V + DD F
Sbjct: 312 FRDEG-RTCLSF-----GASLGYYEGFCY-LLDKALDSV------YVSDDDGSF------ 352
Query: 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI--G 295
P H+ A + G + L ++ PD + LD N+++ H+A + + I
Sbjct: 353 PIHM---AVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRCCKD 409
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG---AALQM--HRELLWFKEVEKIVQ 350
KE + +D + N LHLA K+ HP VS+++ L+ H + EK +
Sbjct: 410 KNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNRVDLKTLNHDGVTALDIAEKNMD 469
Query: 351 P--TFREMKN-----SEG--KTPRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIM 401
TF E S G + P+ + S + G+ K+ + +LVATL+AT+
Sbjct: 470 SSYTFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKY--KDRVNTLLLVATLVATMT 527
Query: 402 FAAAFSVPGGNDN---NKGIPIHLRETLFQVFAMSDVMAXXXXXXXXXXXXXXXXXRYAE 458
F A F++PGG + N G+ ++T FQVF + D +A +A+
Sbjct: 528 FTAGFTLPGGYNGSVPNFGMATLAKKTAFQVFLVFDTLAMYCSIITIVALI------WAQ 581
Query: 459 TDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAYHDRL 499
L + + L L +++ +M +AF + A + L
Sbjct: 582 LGDLSLIMKAFNLALPLLGLALTSMSIAFMAGTYAAVYGLL 622
|
|
| TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 190 (71.9 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 100/474 (21%), Positives = 191/474 (40%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPED-----LTLQDRNGNTAFCFAVAAGSIHIAKIML 101
ET LH+AA A VE L++ + + + +NG+TA A+ + +A ++
Sbjct: 107 ETTLHVAARAGSLNIVEILVRFITESSSYDAFIAAKSKNGDTALHAALKGKHVEVAFCLV 166
Query: 102 KKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPE-DQNALFFTCISTD 160
+ + + +PLYMA ++ L + + + + L ++ + +
Sbjct: 167 SVKHDVSFDKNNDEASPLYMAVEAGYHELVLKMLESSSSPSILASMFSGKSVIHAAMKAN 226
Query: 161 LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLW 220
D+ +L GL R+ T L S AS G + + + K+
Sbjct: 227 RRDILGIVLRQDPGLIELRNEEGRTCL-------SYGAS--MGCYEGIRYILAEFDKAAS 277
Query: 221 EAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280
DD FT P H+ AA+ G+ + E + PD L++ ++IFH+A
Sbjct: 278 SLCYVADDDGFT-----PIHM---AAKEGHVRIIKEFLKHCPDSRELLNNQCQNIFHVAA 329
Query: 281 LHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS---GAALQ-MH 336
+ + + + ++ K +M +D + N LHLA K +P V++++ G L+ ++
Sbjct: 330 IAGKSKVVKYLLKLDEGKRMMNE-QDINGNTPLHLATKHRYPIVVNMLTWNDGINLRALN 388
Query: 337 RE---LLWFKEVEK-----IVQPTFREMKNSEGKTPR--ELFSIEHSSLLRSGELWMKNT 386
E L E K ++ M P L + S + K++
Sbjct: 389 NEGFTALDIAETMKDNNAYVLYKRLIWMALVSAGAPHGPNLIPLTVSQSSKQSPERYKDS 448
Query: 387 AESCMLVATLIATIMFAAAFSVPGGNDNNK---GIPIHLRETLFQVFAMSD--VMAXXXX 441
+ M+ ATL+AT+ FAA ++PGG ++ G+ + + F+VF + + M
Sbjct: 449 VNTLMVTATLVATVTFAAGLTLPGGYMSSAPHLGMAALVNKLNFKVFLLLNNIAMCTSVV 508
Query: 442 XXXXXXXXXXXXXRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLAY 495
+ F +LPL L +S + S+ + + S +L++
Sbjct: 509 TVMALIWAQLGDALLTKKAFRLALPLLLTAVVSMMMASVAGLTLVVSDLPWLSH 562
|
|
| ZFIN|ZDB-GENE-060526-136 ankdd1b "ankyrin repeat and death domain containing 1B" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 5.8e-09, P = 5.8e-09
Identities = 78/307 (25%), Positives = 132/307 (42%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LH A R V+ LL+ + L LQD++G TA A GS+ I K++++
Sbjct: 124 TALHYAVACRNVEAVDVLLR--RRAKLDLQDKHGLTAVHLAAWFGSLEILKLLVQGGADQ 181
Query: 108 LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQ--NALFFTCISTDLHDLA 165
++ E + L+ AA+ D+ Y+ DD + + L EDQ N F + +
Sbjct: 182 -SIENTEGLNMLHCAAMNNHTDIVAYIIDDLQMGE-LDKEDQFGNRPFVLAAAHGCVPML 239
Query: 166 LKLLEDHSGLAVARDGNY-ETALHVLARKPSAFASR------------NQGLLTRLMHSA 212
L+E+H +A + +T LH+ A+ A + NQ T L +A
Sbjct: 240 QMLMEEHYNMATMEENQVGDTPLHLAAKHGQREALQLLLENFHIRNEVNQAGQTALYLAA 299
Query: 213 LQLVKSLWEAILKR--DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDD 270
+ + +L+ D + FT P H E G+F+ + LI S ++ +
Sbjct: 300 DGAHEDCVQTLLEAQCDPNIFTLSRNSPLH---PVCERGHFQIVQLLINSGAQ-INAQNQ 355
Query: 271 NNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV-- 328
++ FH+AV + H + + + E G L DH LH+AA+ V ++
Sbjct: 356 QMQTSFHLAVRNCHIPVIHTLLEAGCDPNLT----DHMGQTALHIAAEMGKVDVVEMILK 411
Query: 329 SGAALQM 335
+G LQ+
Sbjct: 412 AGVDLQI 418
|
|
| TAIR|locus:2046628 AT2G24600 "AT2G24600" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 137 (53.3 bits), Expect = 9.3e-09, Sum P(2) = 9.3e-09
Identities = 68/251 (27%), Positives = 105/251 (41%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T+LH+AA V ++++L +P L+ ++ G+T A G ++I ML L
Sbjct: 39 TVLHVAAKLGHRELVAKIIEL-RPSLLSSRNAYGDTPLHLAALLGDVNIVMQMLDTGLEL 97
Query: 108 LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167
+ R +N TPL++A V + A ++ + K N D+ + ST + + L+
Sbjct: 98 YSARNNKNQTPLHLAFVSIFMEAAKFIVE----KTNSVDLDELNFALSSGSTCIVGIILE 153
Query: 168 LLED--HSGLAVARDGNYETALHVLARK-----PSAFASRNQGLLTRLMH---SALQLVK 217
+ DG+ T LH K S NQGL L S L L
Sbjct: 154 RFPELARKNAWEVEDGSRSTLLHYACDKGDLELTSILLGLNQGLEEALNSKGLSPLHLAV 213
Query: 218 SLWEAILKR---DDSEFTDLIRKPS-HLLFD-AAELGN---FEFLAE-LICSYPDLVHEL 268
I+ D S + +R PS +F AA N F F+AE L S P L+ +
Sbjct: 214 QRGSVIILEEFMDKSPLSFCVRTPSKETVFHLAARNKNTDAFVFMAENLGTSSPILLKKK 273
Query: 269 DDNNRSIFHIA 279
D ++ HIA
Sbjct: 274 DQQGNTVLHIA 284
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00151039 | hypothetical protein (743 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 545 | |||
| pfam13962 | 114 | pfam13962, PGG, Domain of unknown function | 7e-27 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 2e-10 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 5e-09 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 2e-07 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 6e-07 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 2e-05 | |
| pfam12796 | 91 | pfam12796, Ank_2, Ankyrin repeats (3 copies) | 5e-05 | |
| cd00204 | 126 | cd00204, ANK, ankyrin repeats; ankyrin repeats med | 2e-04 | |
| pfam13637 | 54 | pfam13637, Ank_4, Ankyrin repeats (many copies) | 0.002 |
| >gnl|CDD|222475 pfam13962, PGG, Domain of unknown function | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-27
Identities = 38/118 (32%), Positives = 70/118 (59%), Gaps = 13/118 (11%)
Query: 382 WMKNTAESCMLVATLIATIMFAAAFSVPGG-----NDNNKGIPIHL-RETLFQVFAMSDV 435
W++ T S ++VATLIAT+ FAA F+ PGG ++ G PI + F+ F +S+
Sbjct: 3 WLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVSNT 62
Query: 436 MALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFL 493
+A +S +++++ L I+ F + LP +L+ L+ L++S++++MVAF+ +
Sbjct: 63 IAFVASLVAVILLLYIV------PSFSRRLP-RLLALLTLLWLSLLSLMVAFAAGSYR 113
|
The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 2e-10
Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 7/123 (5%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA G+ K LL N + + A G T LHLAA V+ LL+ K
Sbjct: 10 PLHLAASNGHLEVVKLLLEN---GADVNAKDNDGR-TPLHLAAKNGHLEIVKLLLE--KG 63
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMA 131
D+ +D++GNT A G++ + K++LK + R + TPL++AA ++
Sbjct: 64 ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGAD-VNARDKDGRTPLHLAAKNGHLEVV 122
Query: 132 LYL 134
L
Sbjct: 123 KLL 125
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-09
Identities = 32/105 (30%), Positives = 48/105 (45%), Gaps = 8/105 (7%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
T LHLAA V+ LL+ D+ +D +G T A G + I K++L+K
Sbjct: 8 RTPLHLAASNGHLEVVKLLLENGA--DVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-A 64
Query: 107 LLTMRGGENMTPLYMAAVLAQRDMALYL-----YDDAKAKDNLTP 146
+ R + TPL++AA D+ L +A+ KD TP
Sbjct: 65 DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTP 109
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 2e-07
Identities = 30/93 (32%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKG-YETLLHLAAGARQTGFVEELLKLMKP 71
L AA GN K LL A + G +T LHLAA V+ LL+
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-------ADVNLGDTDTALHLAARNGNLEIVKLLLEHGA- 52
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
D+ +D++GNTA A G++ I K++L+
Sbjct: 53 -DVNAKDKDGNTALHLAARNGNLEIVKLLLEHG 84
|
Length = 91 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 6e-07
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 3/117 (2%)
Query: 77 QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYD 136
+D +G T A + G + + K++L+ + + + TPL++AA ++ L +
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARK 193
+ + L + +L +KLL H ARD + T LH+ A+
Sbjct: 62 KGADVNARDKDGNTPLHLAARNGNLD--VVKLLLKHGADVNARDKDGRTPLHLAAKN 116
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-05
Identities = 27/90 (30%), Positives = 38/90 (42%), Gaps = 6/90 (6%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL AA G+ K LL + K T LHLAA V+ LLK
Sbjct: 43 PLHLAAKNGHLEIVKLLLEKGADVNA----RDKDGNTPLHLAARNGNLDVVKLLLK--HG 96
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101
D+ +D++G T A G + + K++L
Sbjct: 97 ADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies) | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-05
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 50 LHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLT 109
LHLAA V+ LL+ K D+ L D + TA A G++ I K++L+ +
Sbjct: 1 LHLAAKNGNLELVKLLLE--KGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADV-N 55
Query: 110 MRGGENMTPLYMAAVLAQRDMALYLYD 136
+ + T L++AA ++ L +
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLE 82
|
Length = 91 |
| >gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 2e-04
Identities = 38/153 (24%), Positives = 64/153 (41%), Gaps = 33/153 (21%)
Query: 178 ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDL 234
ARD + T LH+ A + L++VK L E + +D+ T L
Sbjct: 2 ARDEDGRTPLHLAAS-----------------NGHLEVVKLLLENGADVNAKDNDGRTPL 44
Query: 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294
HL AA+ G+ E + +L+ V+ D + + H+A + + ++ L+ +
Sbjct: 45 -----HL---AAKNGHLEIV-KLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH 95
Query: 295 GFTKELMATFKDHDQNNMLHLAAKSPHPSRVSI 327
G +D D LHLAAK+ H V +
Sbjct: 96 GADVNA----RDKDGRTPLHLAAKNGHLEVVKL 124
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126 |
| >gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies) | Back alignment and domain information |
|---|
Score = 36.1 bits (84), Expect = 0.002
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101
T LH AA + + V+ LL+ K D+ D +GNTA A G++ + K++L
Sbjct: 1 GRTALHKAAISGRLELVKYLLE--KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
|
Length = 54 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02946 | 446 | ankyin-like protein; Provisional | 100.0 | |
| PHA02876 | 682 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 100.0 | |
| KOG0510 | 929 | consensus Ankyrin repeat protein [General function | 100.0 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 100.0 | |
| PHA02716 | 764 | CPXV016; CPX019; EVM010; Provisional | 100.0 | |
| PHA03095 | 471 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02874 | 434 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA03100 | 480 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| PHA02878 | 477 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 100.0 | |
| PHA02791 | 284 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02989 | 494 | ankyrin repeat protein; Provisional | 100.0 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 100.0 | |
| KOG4412 | 226 | consensus 26S proteasome regulatory complex, subun | 100.0 | |
| PHA02917 | 661 | ankyrin-like protein; Provisional | 100.0 | |
| KOG4177 | 1143 | consensus Ankyrin [Cell wall/membrane/envelope bio | 100.0 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02798 | 489 | ankyrin-like protein; Provisional | 100.0 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 100.0 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 100.0 | |
| PHA02730 | 672 | ankyrin-like protein; Provisional | 100.0 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 100.0 | |
| KOG0509 | 600 | consensus Ankyrin repeat and DHHC-type Zn-finger d | 100.0 | |
| KOG0508 | 615 | consensus Ankyrin repeat protein [General function | 99.98 | |
| PHA02792 | 631 | ankyrin-like protein; Provisional | 99.97 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.96 | |
| PHA02859 | 209 | ankyrin repeat protein; Provisional | 99.96 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.95 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.95 | |
| PHA02795 | 437 | ankyrin-like protein; Provisional | 99.94 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.94 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.93 | |
| TIGR00870 | 743 | trp transient-receptor-potential calcium channel p | 99.93 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.93 | |
| PF13962 | 113 | PGG: Domain of unknown function | 99.92 | |
| PLN03192 | 823 | Voltage-dependent potassium channel; Provisional | 99.92 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.91 | |
| KOG4369 | 2131 | consensus RTK signaling protein MASK/UNC-44 [Signa | 99.91 | |
| KOG0507 | 854 | consensus CASK-interacting adaptor protein (caskin | 99.91 | |
| KOG0502 | 296 | consensus Integral membrane ankyrin-repeat protein | 99.9 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.9 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.88 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.88 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.87 | |
| KOG0505 | 527 | consensus Myosin phosphatase, regulatory subunit [ | 99.87 | |
| KOG0514 | 452 | consensus Ankyrin repeat protein [General function | 99.87 | |
| PHA02743 | 166 | Viral ankyrin protein; Provisional | 99.86 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.86 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.85 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.84 | |
| PHA02741 | 169 | hypothetical protein; Provisional | 99.84 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.83 | |
| PHA02884 | 300 | ankyrin repeat protein; Provisional | 99.82 | |
| KOG0512 | 228 | consensus Fetal globin-inducing factor (contains a | 99.82 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.79 | |
| PHA02736 | 154 | Viral ankyrin protein; Provisional | 99.79 | |
| KOG0195 | 448 | consensus Integrin-linked kinase [Signal transduct | 99.77 | |
| KOG3676 | 782 | consensus Ca2+-permeable cation channel OSM-9 and | 99.76 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.74 | |
| PF12796 | 89 | Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02 | 99.72 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.71 | |
| cd00204 | 126 | ANK ankyrin repeats; ankyrin repeats mediate prote | 99.66 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.65 | |
| KOG4214 | 117 | consensus Myotrophin and similar proteins [Transcr | 99.59 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.55 | |
| COG0666 | 235 | Arp FOG: Ankyrin repeat [General function predicti | 99.51 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.47 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.44 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.44 | |
| PF13637 | 54 | Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A | 99.43 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.43 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.42 | |
| PF13857 | 56 | Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A | 99.42 | |
| PTZ00322 | 664 | 6-phosphofructo-2-kinase/fructose-2,6-biphosphatas | 99.39 | |
| KOG1710 | 396 | consensus MYND Zn-finger and ankyrin repeat protei | 99.35 | |
| KOG0515 | 752 | consensus p53-interacting protein 53BP/ASPP, conta | 99.28 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 99.04 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.91 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.77 | |
| KOG0506 | 622 | consensus Glutaminase (contains ankyrin repeat) [A | 98.76 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.69 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.67 | |
| KOG0783 | 1267 | consensus Uncharacterized conserved protein, conta | 98.66 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.66 | |
| KOG0522 | 560 | consensus Ankyrin repeat protein [General function | 98.64 | |
| KOG0818 | 669 | consensus GTPase-activating proteins of the GIT fa | 98.64 | |
| PF13606 | 30 | Ank_3: Ankyrin repeat | 98.62 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.61 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.58 | |
| KOG3609 | 822 | consensus Receptor-activated Ca2+-permeable cation | 98.56 | |
| PF00023 | 33 | Ank: Ankyrin repeat Hereditary spherocytosis; Inte | 98.54 | |
| KOG0782 | 1004 | consensus Predicted diacylglycerol kinase [Signal | 98.52 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.43 | |
| KOG0705 | 749 | consensus GTPase-activating protein Centaurin gamm | 98.35 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 98.13 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.1 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 98.09 | |
| KOG0511 | 516 | consensus Ankyrin repeat protein [General function | 98.01 | |
| KOG0521 | 785 | consensus Putative GTPase activating proteins (GAP | 97.98 | |
| KOG0520 | 975 | consensus Uncharacterized conserved protein, conta | 97.97 | |
| KOG2384 | 223 | consensus Major histocompatibility complex protein | 97.75 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 96.55 | |
| smart00248 | 30 | ANK ankyrin repeats. Ankyrin repeats are about 33 | 96.54 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 95.67 | |
| KOG2505 | 591 | consensus Ankyrin repeat protein [General function | 95.43 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 93.98 | |
| PF06128 | 284 | Shigella_OspC: Shigella flexneri OspC protein; Int | 91.49 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 91.01 | |
| PF03158 | 192 | DUF249: Multigene family 530 protein; InterPro: IP | 90.85 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 89.25 | |
| PF11929 | 76 | DUF3447: Domain of unknown function (DUF3447); Int | 88.96 | |
| cd07920 | 322 | Pumilio Pumilio-family RNA binding domain. Puf rep | 87.75 | |
| COG2322 | 177 | Predicted membrane protein [Function unknown] | 83.02 | |
| PF06570 | 206 | DUF1129: Protein of unknown function (DUF1129); In | 80.78 |
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=375.67 Aligned_cols=307 Identities=11% Similarity=0.055 Sum_probs=253.3
Q ss_pred CCHHhHHHHH--cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 9 ICVPLQKAAL--KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 9 ~~t~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
+.++||.++. .++.++|+.|++ .+ .+++ .+|.+|+||||+|++.|+.++|++|++ +|++++.+|.+|.||||
T Consensus 37 ~~~~Lh~~~~~~~~~~~iv~~Ll~--~G-advn-~~d~~G~TpLh~Aa~~g~~eiv~lLL~--~GAdin~~d~~g~TpLh 110 (446)
T PHA02946 37 NYHILHAYCGIKGLDERFVEELLH--RG-YSPN-ETDDDGNYPLHIASKINNNRIVAMLLT--HGADPNACDKQHKTPLY 110 (446)
T ss_pred CChHHHHHHHhcCCCHHHHHHHHH--Cc-CCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHH
Confidence 4689998764 446789999999 67 7776 789999999999999999999999999 89999999999999999
Q ss_pred HHHHhC--CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 87 FAVAAG--SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 87 ~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
+|+..+ ..+++++|+++|+++....|.+|.|||| |+..|+.+++++|+++|++++..+..|.||||.++..+.....
T Consensus 111 ~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~ 189 (446)
T PHA02946 111 YLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKAS 189 (446)
T ss_pred HHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHH
Confidence 998766 4799999999999984467899999997 6677999999999999999999999999999999887665456
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
+.++|.+.|++++.+|.+|.||||+|+..+... .++ ++.++. + .+++.+|..|.||||+
T Consensus 190 ~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~---------------~~i----v~lLl~-g-adin~~d~~G~TpLh~ 248 (446)
T PHA02946 190 TISWMMKLGISPSKPDHDGNTPLHIVCSKTVKN---------------VDI----INLLLP-S-TDVNKQNKFGDSPLTL 248 (446)
T ss_pred HHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCc---------------HHH----HHHHHc-C-CCCCCCCCCCCCHHHH
Confidence 678888899999999999999999999886331 223 344443 3 6677888999999999
Q ss_pred HHhcCc-HHHHHHHHHHCCCc-------------------cccc-ccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhh
Q 044420 245 AAELGN-FEFLAELICSYPDL-------------------VHEL-DDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMAT 303 (545)
Q Consensus 245 A~~~g~-~~~v~~Ll~~~~~~-------------------~~~~-d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n 303 (545)
|++.++ .++++.|+++|.+. ++.. +..|+||||+|+.+|+.+++++|+++|.
T Consensus 249 A~~~~~~~~~~~~Ll~~g~~~~~~~~~~a~~~~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~------- 321 (446)
T PHA02946 249 LIKTLSPAHLINKLLSTSNVITDQTVNICIFYDRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI------- 321 (446)
T ss_pred HHHhCChHHHHHHHHhCCCCCCCcHHHHHHHcCchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC-------
Confidence 999988 58999999987641 1111 2357799999999999999999998753
Q ss_pred cccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhhh
Q 044420 304 FKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSS 374 (545)
Q Consensus 304 ~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~~ 374 (545)
+|+||||+|+..++.+++++|. .++++++.+ .+|+||+|+|.+.+..
T Consensus 322 ----~~~t~L~~A~~~~~~~~v~~Ll-------------------~~ga~~n~~-~~G~t~l~~a~~~~~~ 368 (446)
T PHA02946 322 ----ICEDAMYYAVLSEYETMVDYLL-------------------FNHFSVDSV-VNGHTCMSECVRLNNP 368 (446)
T ss_pred ----ccccHHHHHHHhCHHHHHHHHH-------------------HCCCCCCCc-cccccHHHHHHHcCCH
Confidence 4789999999999888887773 347788886 5899999999876543
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=368.27 Aligned_cols=311 Identities=21% Similarity=0.168 Sum_probs=269.5
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+..|.||||+|+.....+.++.|++ .| ++.. ..|.++.+|+|+|+..|+.+..+.|++ +++|+|..|..|.||
T Consensus 84 ~D~~~n~~l~~a~~~~~~~~i~~Lls--~g-ad~~-~~n~~~~aplh~A~~~~~~s~L~~Ll~--~~~dvnl~de~~~Tp 157 (929)
T KOG0510|consen 84 KDSADNTPLHAAVEYNQGDKIQVLLS--YG-ADTP-LRNLNKNAPLHLAADSGNYSCLKLLLD--YGADVNLEDENGFTP 157 (929)
T ss_pred hhcccCchhHHHhhcchHHHHHHHHh--cC-CCCC-hhhhhccCchhhccccchHHHHHHHHH--hcCCccccccCCCch
Confidence 45668999999999999999999999 67 6665 789999999999999999999999999 789999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHH-----cccCCccCCCCChhhHHHHHHhc
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCIST 159 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-----~~~~~~~~~~~~~t~l~~aa~~~ 159 (545)
||+||..++.|..+.|++.|++. ...|.+|.+|+|.|+++|..|+.+..+. .+..++..++.+.+|||.|+..+
T Consensus 158 Lh~A~~~~~~E~~k~Li~~~a~~-~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g 236 (929)
T KOG0510|consen 158 LHLAARKNKVEAKKELINKGADP-CKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTHINFDNNEKATPLHLAVEGG 236 (929)
T ss_pred hhHHHhcChHHHHHHHHhcCCCC-CcccCcCCchHHHHHHhcchhhhhhhhccccchhhcccccccCCCCcchhhhhhcC
Confidence 99999999999999999999997 7899999999999999999999999998 66677888899999999988765
Q ss_pred CcHHHHHHHHHhCC--------------CcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhc
Q 044420 160 DLHDLALKLLEDHS--------------GLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILK 225 (545)
Q Consensus 160 ~~~~~~~~lL~~~~--------------~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 225 (545)
. .+.+...|.... ..++..|.+|.||||+|++.|+.+ .++.++.
T Consensus 237 ~-~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~---------------------svd~Ll~ 294 (929)
T KOG0510|consen 237 D-IEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPE---------------------SVDNLLG 294 (929)
T ss_pred C-HHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChh---------------------HHHHHHH
Confidence 5 355555554321 234567999999999999999774 3566666
Q ss_pred CCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhh-
Q 044420 226 RDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMAT- 303 (545)
Q Consensus 226 ~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n- 303 (545)
.+ .+++.++.++.||||.||..|+.+.|+.|++ .+.-+.+..|..|+||||+|+.+||.+++++|+++|++. .+
T Consensus 295 ~G-a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~GA~~---~~~ 370 (929)
T KOG0510|consen 295 FG-ASINSKNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNKGALF---LNM 370 (929)
T ss_pred cC-CcccccCCCCCCchHHHHHcccHHHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhcChhh---hcc
Confidence 66 6677888999999999999999999999999 555568889999999999999999999999999999984 33
Q ss_pred -cccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhh
Q 044420 304 -FKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPREL 367 (545)
Q Consensus 304 -~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~ 367 (545)
..|.+|+||||+|+++|+..+++.|. .+|+++..+|+.|+|++++
T Consensus 371 ~e~D~dg~TaLH~Aa~~g~~~av~~Li-------------------~~Ga~I~~~n~~g~SA~~~ 416 (929)
T KOG0510|consen 371 SEADSDGNTALHLAAKYGNTSAVQKLI-------------------SHGADIGVKNKKGKSAFDT 416 (929)
T ss_pred cccccCCchhhhHHHHhccHHHHHHHH-------------------HcCCceeeccccccccccc
Confidence 55999999999999999999988773 3467777777777777773
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=402.46 Aligned_cols=280 Identities=15% Similarity=0.151 Sum_probs=196.9
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHH-------------------------------
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAA------------------------------- 54 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~------------------------------- 54 (545)
...+.||||.|+..|+.|+|+.|++ ++| ..+. ..|..|.||||+|+
T Consensus 38 ~~~~~t~LH~A~~~g~~e~V~~ll~-~~~-~~~~-~~~~~~~tpLh~a~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 114 (682)
T PHA02876 38 ESIPFTAIHQALQLRQIDIVEEIIQ-QNP-ELIY-ITDHKCHSTLHTICIIPNVMDIVISLTLDCDIILDIKYASIILNK 114 (682)
T ss_pred ccccchHHHHHHHHHhhhHHHHHHH-hCc-ccch-hhchhhccccccccCCCCccccccccccchhhcccccHHHHHHHH
Confidence 4468999999999999999999999 677 5444 77899999999666
Q ss_pred ---------------------------------------HcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHH
Q 044420 55 ---------------------------------------GARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIH 95 (545)
Q Consensus 55 ---------------------------------------~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~ 95 (545)
..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+
T Consensus 115 ~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~i~k~Ll~--~Gadvn~~d~~G~TpLh~Aa~~G~~~ 192 (682)
T PHA02876 115 HKLDEACIHILKEAISGNDIHYDKINESIEYMKLIKERIQQDELLIAEMLLE--GGADVNAKDIYCITPIHYAAERGNAK 192 (682)
T ss_pred HHHHHHHHHHHHHHhcCCcccHHhhccchhhhHHHHHHHHCCcHHHHHHHHh--CCCCCCCCCCCCCCHHHHHHHCCCHH
Confidence 5578899999999 89999999999999999999999999
Q ss_pred HHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc-----------------------------cCCccCCC
Q 044420 96 IAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA-----------------------------KAKDNLTP 146 (545)
Q Consensus 96 iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~-----------------------------~~~~~~~~ 146 (545)
+|++|+++|+++ +..+.+|.||||+|+..|+.+++++|++++ ++++..+.
T Consensus 193 iv~~LL~~Gad~-n~~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~vn~~d~ 271 (682)
T PHA02876 193 MVNLLLSYGADV-NIIALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSVNSIDD 271 (682)
T ss_pred HHHHHHHCCCCc-CccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence 999999999997 889999999999999999988887776544 44555666
Q ss_pred CChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcC
Q 044420 147 EDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR 226 (545)
Q Consensus 147 ~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 226 (545)
.|.||||+|+..++. ..+.++|.+.|++++.+|.+|.||||+|+..|... +. ++.++..
T Consensus 272 ~g~TpLh~Aa~~~~~-~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~----------------~~----v~~Ll~~ 330 (682)
T PHA02876 272 CKNTPLHHASQAPSL-SRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDT----------------EN----IRTLIML 330 (682)
T ss_pred CCCCHHHHHHhCCCH-HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCH----------------HH----HHHHHHc
Confidence 788888888876553 45667777888888888888888888888877421 11 2222222
Q ss_pred CchhhhhhccCCChHHHHHHhc-CcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcc
Q 044420 227 DDSEFTDLIRKPSHLLFDAAEL-GNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFK 305 (545)
Q Consensus 227 ~~~~~~~~~~~g~tpLh~A~~~-g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~ 305 (545)
+ .+.+..|..|.||||+|+.. ++.++++.|++.|++ ++.+|..|+||||+|+..++.+++++|+++|++ ++..
T Consensus 331 g-adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad-in~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad----~~~~ 404 (682)
T PHA02876 331 G-ADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN-VNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD----IEAL 404 (682)
T ss_pred C-CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----cccc
Confidence 2 22333344444444444442 234444444444444 444444444444444444444444444444444 3334
Q ss_pred cCCCCChhhhhcc
Q 044420 306 DHDQNNMLHLAAK 318 (545)
Q Consensus 306 d~~G~TpLh~A~~ 318 (545)
+..|.||||+|+.
T Consensus 405 ~~~g~T~Lh~A~~ 417 (682)
T PHA02876 405 SQKIGTALHFALC 417 (682)
T ss_pred CCCCCchHHHHHH
Confidence 4444444444443
|
|
| >PHA02946 ankyin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=363.38 Aligned_cols=288 Identities=14% Similarity=0.068 Sum_probs=239.7
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCccccc-ccCC
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQ--TGFVEELLKLMKPEDLTL-QDRN 80 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~-~d~~ 80 (545)
..+.+|+||||+||+.|+.++++.|++ ++ ++++ .+|.+|.||||+|+..++ .+++++|++ +|++++. .|..
T Consensus 67 ~~d~~G~TpLh~Aa~~g~~eiv~lLL~--~G-Adin-~~d~~g~TpLh~A~~~~~~~~e~v~lLl~--~Gadin~~~d~~ 140 (446)
T PHA02946 67 ETDDDGNYPLHIASKINNNRIVAMLLT--HG-ADPN-ACDKQHKTPLYYLSGTDDEVIERINLLVQ--YGAKINNSVDEE 140 (446)
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--Cc-CCCC-CCCCCCCCHHHHHHHcCCchHHHHHHHHH--cCCCcccccCCC
Confidence 356789999999999999999999999 77 7776 789999999999998764 899999999 8999995 6899
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC--HHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ--RDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~--~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
|.|||| |+..|+.++++.|++.|+++ +.+|..|+||||+|+..++ .+++++|+++|++++..|..|.||||+|+..
T Consensus 141 g~tpL~-aa~~~~~~vv~~Ll~~gad~-~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~ 218 (446)
T PHA02946 141 GCGPLL-ACTDPSERVFKKIMSIGFEA-RIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSK 218 (446)
T ss_pred CCcHHH-HHHCCChHHHHHHHhccccc-cccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 999998 67789999999999999997 8999999999999987654 6899999999999999999999999999987
Q ss_pred cC-cHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHh-----------cC
Q 044420 159 TD-LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAIL-----------KR 226 (545)
Q Consensus 159 ~~-~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~-----------~~ 226 (545)
+. ..+ +.++|.. +++++.+|..|.||||+|+..++.. ++++.+++... ..
T Consensus 219 ~~~~~~-iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~----------------~~~~~Ll~~g~~~~~~~~~~a~~~ 280 (446)
T PHA02946 219 TVKNVD-IINLLLP-STDVNKQNKFGDSPLTLLIKTLSPA----------------HLINKLLSTSNVITDQTVNICIFY 280 (446)
T ss_pred CCCcHH-HHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChH----------------HHHHHHHhCCCCCCCcHHHHHHHc
Confidence 63 434 4455554 8999999999999999999987632 12222211110 00
Q ss_pred Cch----hhhhh-ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhh
Q 044420 227 DDS----EFTDL-IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301 (545)
Q Consensus 227 ~~~----~~~~~-~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~ 301 (545)
+.. ..... +..|.||||+|++.|+.+++++|+++++ .|+||||+|+.+++.+++++|+++|++
T Consensus 281 ~~~~~~e~l~~~g~~~~~TpLh~Aa~~g~~eivk~Ll~~~~--------~~~t~L~~A~~~~~~~~v~~Ll~~ga~---- 348 (446)
T PHA02946 281 DRDDVLEIINDKGKQYDSTDFKMAVEVGSIRCVKYLLDNDI--------ICEDAMYYAVLSEYETMVDYLLFNHFS---- 348 (446)
T ss_pred CchHHHHHHHHcCcccCCCHHHHHHHcCCHHHHHHHHHCCC--------ccccHHHHHHHhCHHHHHHHHHHCCCC----
Confidence 000 01111 2357899999999999999999999765 478999999999999999999999999
Q ss_pred hhcccCCCCChhhhhccCCCCCccccccc
Q 044420 302 ATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 302 ~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
+|.+ .+|+||||+|++.++.++++.|..
T Consensus 349 ~n~~-~~G~t~l~~a~~~~~~~~~~~ll~ 376 (446)
T PHA02946 349 VDSV-VNGHTCMSECVRLNNPVILSKLML 376 (446)
T ss_pred CCCc-cccccHHHHHHHcCCHHHHHHHHh
Confidence 6765 589999999999999999988854
|
|
| >PHA02876 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=387.16 Aligned_cols=312 Identities=15% Similarity=0.089 Sum_probs=271.3
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.+..++|+.|+..|+.++++.|++ .+ .+++ .+|..|+||||+|++.|+.++|++|++ +|++++..+..|.||||
T Consensus 143 ~~~~~~l~~~i~~~~~~i~k~Ll~--~G-advn-~~d~~G~TpLh~Aa~~G~~~iv~~LL~--~Gad~n~~~~~g~t~L~ 216 (682)
T PHA02876 143 IEYMKLIKERIQQDELLIAEMLLE--GG-ADVN-AKDIYCITPIHYAAERGNAKMVNLLLS--YGADVNIIALDDLSVLE 216 (682)
T ss_pred hhhhHHHHHHHHCCcHHHHHHHHh--CC-CCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCccCCCCCCHHH
Confidence 345678999999999999999999 77 7776 789999999999999999999999999 89999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcC-----------------------------cccccCCCCCCCcHHHHHHHcCCH-HHHHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKN-----------------------------ERLLTMRGGENMTPLYMAAVLAQR-DMALYLYD 136 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~-----------------------------~~~~~~~~~~g~tpL~~A~~~g~~-~iv~~Ll~ 136 (545)
+|+..|+.++++.|++.+ +++ +..|..|.||||+|+..|+. +++++|++
T Consensus 217 ~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~~ai~~~~~~~~~~Ll~~g~~v-n~~d~~g~TpLh~Aa~~~~~~~iv~lLl~ 295 (682)
T PHA02876 217 CAVDSKNIDTIKAIIDNRSNINKNDLSLLKAIRNEDLETSLLLYDAGFSV-NSIDDCKNTPLHHASQAPSLSRLVPKLLE 295 (682)
T ss_pred HHHHcCCHHHHHHHHhcCCCCCCCcHHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhCCCHHHHHHHHHH
Confidence 999999988888776654 344 56788899999999999996 69999999
Q ss_pred cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHH
Q 044420 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLV 216 (545)
Q Consensus 137 ~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (545)
+|++++..+..|.||||+|+..+.. ..+.++|...|++++.+|..|.||||+|+..+... ++
T Consensus 296 ~gadin~~d~~g~TpLh~Aa~~g~~-~~~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~----------------~i- 357 (682)
T PHA02876 296 RGADVNAKNIKGETPLYLMAKNGYD-TENIRTLIMLGADVNAADRLYITPLHQASTLDRNK----------------DI- 357 (682)
T ss_pred CCCCCCCcCCCCCCHHHHHHHhCCC-HHHHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcH----------------HH-
Confidence 9999999999999999999987754 35667888899999999999999999999876432 22
Q ss_pred HHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc-hHHHHHHHhhc
Q 044420 217 KSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH-ANIFNLIYEIG 295 (545)
Q Consensus 217 ~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~-~~iv~~Ll~~g 295 (545)
++.+++.+ .+++.+|..|.||||+|+..|+.+++++|+++|++ ++..+..|.||||+|+..++ ..++++|+++|
T Consensus 358 ---v~lLl~~g-adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad-~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~g 432 (682)
T PHA02876 358 ---VITLLELG-ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD-IEALSQKIGTALHFALCGTNPYMSVKTLIDRG 432 (682)
T ss_pred ---HHHHHHcC-CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCchHHHHHHcCCHHHHHHHHHhCC
Confidence 34444455 56677889999999999999999999999999999 89999999999999998665 57899999999
Q ss_pred cchhhhhhcccCCCCChhhhhccCC-CCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 296 FTKELMATFKDHDQNNMLHLAAKSP-HPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 296 ~~~~~~~n~~d~~G~TpLh~A~~~~-~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
++ +|.+|.+|+||||+|+..+ +.+++++|.+ .|++++.+|.+|.||+++|.+.
T Consensus 433 ad----in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~-------------------~Gad~n~~d~~g~tpl~~a~~~ 486 (682)
T PHA02876 433 AN----VNSKNKDLSTPLHYACKKNCKLDVIEMLLD-------------------NGADVNAINIQNQYPLLIALEY 486 (682)
T ss_pred CC----CCcCCCCCChHHHHHHHhCCcHHHHHHHHH-------------------CCCCCCCCCCCCCCHHHHHHHh
Confidence 98 8899999999999999876 5677777632 3889999999999999999864
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=360.68 Aligned_cols=285 Identities=15% Similarity=0.123 Sum_probs=255.9
Q ss_pred HHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcC---CHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 14 QKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGAR---QTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 14 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
..++..++.++|+.|++ ++ .+++ ..+..|.||||+|+..| +.+++++|++ .|+++|.+|..|.||||+|+.
T Consensus 19 ~~~~~~~~~~~v~~Ll~--~g-a~vn-~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~Gadin~~~~~g~TpLh~A~~ 92 (471)
T PHA03095 19 LLNASNVTVEEVRRLLA--AG-ADVN-FRGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AGADVNAPERCGFTPLHLYLY 92 (471)
T ss_pred HHcCCCCCHHHHHHHHH--cC-CCcc-cCCCCCCCHHHHHHHhcCCChHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHH
Confidence 55688899999999999 77 7776 78999999999999999 9999999999 899999999999999999999
Q ss_pred hC-CHHHHHHHHHcCcccccCCCCCCCcHHHHHH--HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 91 AG-SIHIAKIMLKKNERLLTMRGGENMTPLYMAA--VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 91 ~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
.| +.+++++|+++|+++ +.+|..|.||||+|+ ..++.+++++|+++|++++..+..|.||+|.++...+....+.+
T Consensus 93 ~~~~~~iv~lLl~~ga~i-n~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~ 171 (471)
T PHA03095 93 NATTLDVIKLLIKAGADV-NAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLR 171 (471)
T ss_pred cCCcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHH
Confidence 99 599999999999997 899999999999999 56789999999999999999999999999999988765556778
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
+|.+.|.+++..|..|.||||+++..... ..++ ++.+++.+ .+.+.+|..|.||||+|+.
T Consensus 172 ~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~---------------~~~i----~~~Ll~~g-~~~~~~d~~g~tpLh~Aa~ 231 (471)
T PHA03095 172 LLIDAGADVYAVDDRFRSLLHHHLQSFKP---------------RARI----VRELIRAG-CDPAATDMLGNTPLHSMAT 231 (471)
T ss_pred HHHHcCCCCcccCCCCCCHHHHHHHHCCC---------------cHHH----HHHHHHcC-CCCcccCCCCCCHHHHHHh
Confidence 88899999999999999999999976533 2233 44455555 5566788999999999999
Q ss_pred cCcH--HHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCcc
Q 044420 248 LGNF--EFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRV 325 (545)
Q Consensus 248 ~g~~--~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~ 325 (545)
.|+. .+++.|++.|.+ ++.+|..|+||||+|+..|+.+++++|+++|++ +|.+|.+|+||||+|+..|+.+++
T Consensus 232 ~~~~~~~~v~~ll~~g~d-in~~d~~g~TpLh~A~~~~~~~~v~~LL~~gad----~n~~~~~g~tpl~~A~~~~~~~~v 306 (471)
T PHA03095 232 GSSCKRSLVLPLLIAGIS-INARNRYGQTPLHYAAVFNNPRACRRLIALGAD----INAVSSDGNTPLSLMVRNNNGRAV 306 (471)
T ss_pred cCCchHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CcccCCCCCCHHHHHHHhCCHHHH
Confidence 9975 688999999999 999999999999999999999999999999999 788999999999999999999999
Q ss_pred ccccc
Q 044420 326 SIVSG 330 (545)
Q Consensus 326 ~~L~~ 330 (545)
+.|..
T Consensus 307 ~~LL~ 311 (471)
T PHA03095 307 RAALA 311 (471)
T ss_pred HHHHH
Confidence 88854
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=350.54 Aligned_cols=274 Identities=15% Similarity=0.134 Sum_probs=203.2
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
..|+.|+..|+.+.++.|++ ..+ ..++ ..+..|.||||.|++.|+.++|++|++ .|++++..+..|.||||.|+.
T Consensus 3 ~~l~~ai~~gd~~~v~~ll~-~~~-~~~n-~~~~~~~tpL~~A~~~g~~~iv~~Ll~--~Ga~~n~~~~~~~t~L~~A~~ 77 (434)
T PHA02874 3 QDLRMCIYSGDIEAIEKIIK-NKG-NCIN-ISVDETTTPLIDAIRSGDAKIVELFIK--HGADINHINTKIPHPLLTAIK 77 (434)
T ss_pred HHHHHHHhcCCHHHHHHHHH-cCC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHH
Confidence 36889999999999999998 455 4444 667889999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCccc----------------------ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCC
Q 044420 91 AGSIHIAKIMLKKNERL----------------------LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPED 148 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~----------------------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 148 (545)
.|+.+++++|+++|++. .+.+|..|.||||+|+..|+.+++++|+++|++++..+..|
T Consensus 78 ~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g 157 (434)
T PHA02874 78 IGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNG 157 (434)
T ss_pred cCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCC
Confidence 99999999999987653 14566677777777777777777777777777777677777
Q ss_pred hhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc
Q 044420 149 QNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 149 ~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 228 (545)
.||||+|+..+. ..+.++|.+.|++++.+|..|.||||+|+..|+. ++ ++.+++.+
T Consensus 158 ~tpLh~A~~~~~--~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~-----------------~i----v~~Ll~~g- 213 (434)
T PHA02874 158 CYPIHIAIKHNF--FDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDY-----------------AC----IKLLIDHG- 213 (434)
T ss_pred CCHHHHHHHCCc--HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCH-----------------HH----HHHHHhCC-
Confidence 777777766544 2455666666777777777777777777777743 22 33344444
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC-chHHHHHHHhhccchhhhhhcccC
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR-HANIFNLIYEIGFTKELMATFKDH 307 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~-~~~iv~~Ll~~g~~~~~~~n~~d~ 307 (545)
.+....+..|.||||.|+..+. +.+++|+ .+++ ++.+|.+|+||||+|+..+ +.+++++|+++|++ ++.+|.
T Consensus 214 ~~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-~~~~-in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad----~n~~d~ 286 (434)
T PHA02874 214 NHIMNKCKNGFTPLHNAIIHNR-SAIELLI-NNAS-INDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD----ISIKDN 286 (434)
T ss_pred CCCcCCCCCCCCHHHHHHHCCh-HHHHHHH-cCCC-CCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC----CCCCCC
Confidence 3344455667777777777654 4455555 4566 6677777777777777654 66777777777777 566777
Q ss_pred CCCChhhhhccCC
Q 044420 308 DQNNMLHLAAKSP 320 (545)
Q Consensus 308 ~G~TpLh~A~~~~ 320 (545)
.|+||||+|++++
T Consensus 287 ~g~TpL~~A~~~~ 299 (434)
T PHA02874 287 KGENPIDTAFKYI 299 (434)
T ss_pred CCCCHHHHHHHhC
Confidence 7777777777665
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=351.91 Aligned_cols=339 Identities=10% Similarity=0.036 Sum_probs=259.8
Q ss_pred CcccccCCHHhHHHHHcC---ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCcccccc
Q 044420 3 RNVYLNICVPLQKAALKG---NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGAR--QTGFVEELLKLMKPEDLTLQ 77 (545)
Q Consensus 3 ~~~~~~~~t~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~ 77 (545)
+..+.+|+||||+|+..| +.|+|+.|++ +| ++++ .+|..|+||||+|+..+ +.|+|++|++...+++++..
T Consensus 35 ~~kd~~G~TaLh~A~~~~~~~~~eivklLLs--~G-Adin-~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~ 110 (672)
T PHA02730 35 KHIDRRGNNALHCYVSNKCDTDIKIVRLLLS--RG-VERL-CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT 110 (672)
T ss_pred hhcCCCCCcHHHHHHHcCCcCcHHHHHHHHh--CC-CCCc-ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc
Confidence 355678999999999997 5999999999 88 8887 78999999999999977 79999999994335566888
Q ss_pred cCCCCcHHHHHHH--hCCHHHHHHHHH-cCcccccCCC-----CCCCcHHHHHHHcCCHHHHHHHHHcccCCc-------
Q 044420 78 DRNGNTAFCFAVA--AGSIHIAKIMLK-KNERLLTMRG-----GENMTPLYMAAVLAQRDMALYLYDDAKAKD------- 142 (545)
Q Consensus 78 d~~g~TpLh~A~~--~g~~~iv~~Ll~-~~~~~~~~~~-----~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~------- 142 (545)
+..+.+|||.++. +++.++|++|++ .+.++ +..+ ..|.+|+++|...++.|+|++|+++|++++
T Consensus 111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~-~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~ 189 (672)
T PHA02730 111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRP-SKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC 189 (672)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHhcCCCh-hhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence 8889999999998 899999999997 55664 3332 379999999999999999999999999974
Q ss_pred cCCCCChhhHHH-HHHh----cCcHHHHHHHHHhCCCcccccCCCCchHHHH--HHhCCCCccccccch-----------
Q 044420 143 NLTPEDQNALFF-TCIS----TDLHDLALKLLEDHSGLAVARDGNYETALHV--LARKPSAFASRNQGL----------- 204 (545)
Q Consensus 143 ~~~~~~~t~l~~-aa~~----~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~--A~~~~~~~~~~~~~~----------- 204 (545)
..+....+|+++ ...+ ......+.++|.++|++++.+|.+|+||||+ +...++.+.++.+..
T Consensus 190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~ 269 (672)
T PHA02730 190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDI 269 (672)
T ss_pred cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccc
Confidence 244555556555 4433 2233678899999999999999999999996 443444443332221
Q ss_pred --------------------------------------------------hhHhH------------HHHHHHH------
Q 044420 205 --------------------------------------------------LTRLM------------HSALQLV------ 216 (545)
Q Consensus 205 --------------------------------------------------~~~~~------------~~~~~~~------ 216 (545)
..+.. .....++
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~ 349 (672)
T PHA02730 270 SQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLIN 349 (672)
T ss_pred cchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHH
Confidence 00000 0000011
Q ss_pred ---------HHHHHHHhcCCchhhhhhccCCChHHHHHHhcCc----HHHHHHHHHHCCC-cccccccCCCcHHHH---H
Q 044420 217 ---------KSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN----FEFLAELICSYPD-LVHELDDNNRSIFHI---A 279 (545)
Q Consensus 217 ---------~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~-~~~~~d~~G~t~Lh~---A 279 (545)
..+++.|++.+ .+++.. ..|.||||+|+..++ .+++++|+++|++ .++.+|.+|+||||. |
T Consensus 350 Y~~~~~~v~ieIvelLIs~G-AdIN~k-~~G~TpLH~Aa~~nnn~i~~eIvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a 427 (672)
T PHA02730 350 YLHYGDMVSIPILRCMLDNG-ATMDKT-TDNNYPLHDYFVNNNNIVDVNVVRFIVENNGHMAINHVSNNGRLCMYGLILS 427 (672)
T ss_pred HHhcCCcCcHHHHHHHHHCC-CCCCcC-CCCCcHHHHHHHHcCCcchHHHHHHHHHcCCCccccccccCCCchHhHHHHH
Confidence 12344455555 444543 689999999998875 8999999999873 388999999999994 3
Q ss_pred HHhC---------chHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhc
Q 044420 280 VLHR---------HANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQ 350 (545)
Q Consensus 280 ~~~~---------~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~ 350 (545)
...+ ..+++++|+++|++ +|.+|..|+||||+|+..++.+++++|. .+
T Consensus 428 ~~~n~~~~~~e~~~~~ivk~LIs~GAD----INakD~~G~TPLh~Aa~~~~~eive~LI-------------------~~ 484 (672)
T PHA02730 428 RFNNCGYHCYETILIDVFDILSKYMDD----IDMIDNENKTLLYYAVDVNNIQFARRLL-------------------EY 484 (672)
T ss_pred HhccccccccchhHHHHHHHHHhcccc----hhccCCCCCCHHHHHHHhCCHHHHHHHH-------------------HC
Confidence 3232 23569999999999 8899999999999999999888887773 34
Q ss_pred CccccccCC-CCCChhhhhHhh
Q 044420 351 PTFREMKNS-EGKTPRELFSIE 371 (545)
Q Consensus 351 ~~~~~~~n~-~G~Tpl~~a~~~ 371 (545)
|++++.+|. .|.||+|+|...
T Consensus 485 GAdIN~~d~~~g~TaL~~Aa~~ 506 (672)
T PHA02730 485 GASVNTTSRSIINTAIQKSSYR 506 (672)
T ss_pred CCCCCCCCCcCCcCHHHHHHHh
Confidence 889999997 599999999763
|
|
| >KOG0510 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=347.33 Aligned_cols=315 Identities=18% Similarity=0.131 Sum_probs=264.2
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+..|+|++|.|+..+.. ++ . .......|..|+||||+|++....+.++.|++ .|++++..|.++.+|
T Consensus 57 ~~~~gd~~~~~~~~~~y~------~~--~--~~~~~a~D~~~n~~l~~a~~~~~~~~i~~Lls--~gad~~~~n~~~~ap 124 (929)
T KOG0510|consen 57 KRAFGDTELHHASARNYI------LS--K--LAISYAKDSADNTPLHAAVEYNQGDKIQVLLS--YGADTPLRNLNKNAP 124 (929)
T ss_pred hhhhchhHHHHHHhhcch------hh--h--hhhhhhhhcccCchhHHHhhcchHHHHHHHHh--cCCCCChhhhhccCc
Confidence 456799999999999876 22 1 22233678999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
+|+|+..|+.++.+.|+++|+|+ +..|+.|.||||+||..++.|..+.|++.|+++...+..|.+|+|.|+.++.. +.
T Consensus 125 lh~A~~~~~~s~L~~Ll~~~~dv-nl~de~~~TpLh~A~~~~~~E~~k~Li~~~a~~~K~~~~~~~~iH~aa~s~s~-e~ 202 (929)
T KOG0510|consen 125 LHLAADSGNYSCLKLLLDYGADV-NLEDENGFTPLHLAARKNKVEAKKELINKGADPCKSDIDGNFPIHEAARSGSK-EC 202 (929)
T ss_pred hhhccccchHHHHHHHHHhcCCc-cccccCCCchhhHHHhcChHHHHHHHHhcCCCCCcccCcCCchHHHHHHhcch-hh
Confidence 99999999999999999999997 99999999999999999999988999999999888899999999999988763 34
Q ss_pred HHHHHHh----CCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc----------hh
Q 044420 165 ALKLLED----HSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD----------SE 230 (545)
Q Consensus 165 ~~~lL~~----~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----------~~ 230 (545)
..-++.+ .+..+|.-+..|.||||.|+..|+.+. ++.+++.+.+... ..
T Consensus 203 mEi~l~~~g~~r~~~in~~~n~~~~pLhlAve~g~~e~-----------------lk~~L~n~~~~a~~~~~~~~q~kel 265 (929)
T KOG0510|consen 203 MEIFLPEHGYERQTHINFDNNEKATPLHLAVEGGDIEM-----------------LKMCLQNGKKIADVQLDAMQQEKEL 265 (929)
T ss_pred hhhhhccccchhhcccccccCCCCcchhhhhhcCCHHH-----------------HHHHHhCccccchhhhHHHHHHHHH
Confidence 4334443 456788899999999999999997643 3333222221111 12
Q ss_pred hhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCC
Q 044420 231 FTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN 310 (545)
Q Consensus 231 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~ 310 (545)
++..|++|.||||+||+.|+.+.++.|+..|++ ++.++.++.||||.|+.+|+.+.|+-|++ ..+.. ++|..|..|+
T Consensus 266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~-I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~r-llne~D~~g~ 342 (929)
T KOG0510|consen 266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGAS-INSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTR-LLNESDLHGM 342 (929)
T ss_pred hhcccccCCchHHHHHHcCChhHHHHHHHcCCc-ccccCCCCCCchHHHHHcccHHHHHHHHh-CcCcc-ccccccccCC
Confidence 456789999999999999999999999999999 99999999999999999999999999999 22222 5899999999
Q ss_pred ChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCcccc---ccCCCCCChhhhhHhhh
Q 044420 311 NMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFRE---MKNSEGKTPRELFSIEH 372 (545)
Q Consensus 311 TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~---~~n~~G~Tpl~~a~~~~ 372 (545)
||||+|++.||..++++|.+. |+... ..|++|.||||.|+..+
T Consensus 343 tpLHlaa~~gH~~v~qlLl~~-------------------GA~~~~~~e~D~dg~TaLH~Aa~~g 388 (929)
T KOG0510|consen 343 TPLHLAAKSGHDRVVQLLLNK-------------------GALFLNMSEADSDGNTALHLAAKYG 388 (929)
T ss_pred CchhhhhhcCHHHHHHHHHhc-------------------ChhhhcccccccCCchhhhHHHHhc
Confidence 999999999999999988543 22222 34999999999998753
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=352.08 Aligned_cols=307 Identities=11% Similarity=0.041 Sum_probs=237.2
Q ss_pred HcCChHHHHHhhcCCCCchhhhhcc-CCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCC-
Q 044420 18 LKGNWPTAKHLLGNEDPRSILCAGI-AKGYETLLHLAAG--ARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGS- 93 (545)
Q Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~-~~~g~T~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~- 93 (545)
+.++.+++++|++ ... .+++ .. |..|.||||.|+. .++.+++++|++ +|++++.+|..|.||||+|+..|+
T Consensus 151 ~~v~leiVk~LLe-~G~-ADIN-~~~d~~G~TpLH~A~~n~~~~~eIVklLLe--~GADVN~kD~~G~TPLH~Aa~~g~~ 225 (764)
T PHA02716 151 RGIDLDLIKYMVD-VGI-VNLN-YVCKKTGYGILHAYLGNMYVDIDILEWLCN--NGVNVNLQNNHLITPLHTYLITGNV 225 (764)
T ss_pred cCCCHHHHHHHHH-CCC-CCcc-cccCCCCCcHHHHHHHhccCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHHHcCCC
Confidence 4689999999999 332 3455 45 8899999999875 467899999999 899999999999999999999995
Q ss_pred -HHHHHHHHHcCcccccCCCCCCCcHHHHHH---HcCCHHHHHHHHHcccCCccCCCCChhhHH--HHHHhcCcHHHHHH
Q 044420 94 -IHIAKIMLKKNERLLTMRGGENMTPLYMAA---VLAQRDMALYLYDDAKAKDNLTPEDQNALF--FTCISTDLHDLALK 167 (545)
Q Consensus 94 -~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~---~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~--~aa~~~~~~~~~~~ 167 (545)
.++|++|+++|+++ +.+|..|.||||+|+ .+++.++++.|++.+.. +.. .....+++ ..+...+..+ +.+
T Consensus 226 ~~eIVklLLe~GADV-N~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~-n~~-~~~~~~L~~~i~AA~~g~le-iVk 301 (764)
T PHA02716 226 CASVIKKIIELGGDM-DMKCVNGMSPIMTYIINIDNINPEITNIYIESLDG-NKV-KNIPMILHSYITLARNIDIS-VVY 301 (764)
T ss_pred CHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccc-ccc-ccchhhhHHHHHHHHcCCHH-HHH
Confidence 59999999999997 899999999999885 56889999999987543 111 11122232 2234445544 446
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
+|.+.|++++.+|.+|+||||+|+..+.. ..++ ++.|++.+ .+++.+|..|+||||+|+.
T Consensus 302 lLLe~GAdIN~kD~~G~TPLH~Aaa~~~~---------------~~eI----VklLLe~G-ADIN~kD~~G~TPLH~A~~ 361 (764)
T PHA02716 302 SFLQPGVKLHYKDSAGRTCLHQYILRHNI---------------STDI----IKLLHEYG-NDLNEPDNIGNTVLHTYLS 361 (764)
T ss_pred HHHhCCCceeccCCCCCCHHHHHHHHhCC---------------CchH----HHHHHHcC-CCCccCCCCCCCHHHHHHH
Confidence 66678999999999999999998754321 1233 45555555 5667788999999999875
Q ss_pred --------------cCcHHHHHHHHHHCCCcccccccCCCcHHHHH----HHhCchHHHHHHHhhccch-----------
Q 044420 248 --------------LGNFEFLAELICSYPDLVHELDDNNRSIFHIA----VLHRHANIFNLIYEIGFTK----------- 298 (545)
Q Consensus 248 --------------~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A----~~~~~~~iv~~Ll~~g~~~----------- 298 (545)
.++.+++++|+++|++ ++.+|..|+||||.+ ...++.+++++|++.|...
T Consensus 362 ~lav~~~ld~~~~~~~~~eVVklLL~~GAD-In~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~~~~~~~~~~q~ll 440 (764)
T PHA02716 362 MLSVVNILDPETDNDIRLDVIQCLISLGAD-ITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKVLNMVKHRILQDLL 440 (764)
T ss_pred hhhhhccccccccccChHHHHHHHHHCCCC-CCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcchhhhhhhhhhhhh
Confidence 3789999999999999 899999999999942 2346789999998865310
Q ss_pred ----------------------------------------------hhhhhcccCCCCChhhhhccCCCCCcc-----cc
Q 044420 299 ----------------------------------------------ELMATFKDHDQNNMLHLAAKSPHPSRV-----SI 327 (545)
Q Consensus 299 ----------------------------------------------~~~~n~~d~~G~TpLh~A~~~~~~~~~-----~~ 327 (545)
...+|.+|..|+||||+|+..|+.+.+ ++
T Consensus 441 ~~~d~~~~~lhh~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~ii~~~nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~ 520 (764)
T PHA02716 441 IRVDDTPCIIHHIIAKYNIPTDLYTDEYEPYDSTKIHDVYHCAIIERYNNAVCETSGMTPLHVSIISHTNANIVMDSFVY 520 (764)
T ss_pred hccCcchhhHHHHHHhcCcchhhhhhhhhhccccccchhhHHHHHhhccccccCCCCCCHHHHHHHcCCccchhHHHHHH
Confidence 001356688999999999999887655 54
Q ss_pred ccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 328 VSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 328 L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
|. ..|++++.+|++|+||||+|.++.+
T Consensus 521 LL-------------------~~GADIN~~d~~G~TPLh~A~~~g~ 547 (764)
T PHA02716 521 LL-------------------SIQYNINIPTKNGVTPLMLTMRNNR 547 (764)
T ss_pred HH-------------------hCCCCCcccCCCCCCHHHHHHHcCC
Confidence 42 2488999999999999999998653
|
|
| >PHA02716 CPXV016; CPX019; EVM010; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=345.88 Aligned_cols=296 Identities=10% Similarity=0.008 Sum_probs=226.7
Q ss_pred cccCCHHhHHHHH--cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCcccccccCCC
Q 044420 6 YLNICVPLQKAAL--KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQ--TGFVEELLKLMKPEDLTLQDRNG 81 (545)
Q Consensus 6 ~~~~~t~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~d~~g 81 (545)
+..|.||||.|+. .++.+++++|++ +| .+++ .+|..|+||||+|++.|+ .++|++|++ .|+++|.+|..|
T Consensus 174 d~~G~TpLH~A~~n~~~~~eIVklLLe--~G-ADVN-~kD~~G~TPLH~Aa~~g~~~~eIVklLLe--~GADVN~kD~~G 247 (764)
T PHA02716 174 KKTGYGILHAYLGNMYVDIDILEWLCN--NG-VNVN-LQNNHLITPLHTYLITGNVCASVIKKIIE--LGGDMDMKCVNG 247 (764)
T ss_pred CCCCCcHHHHHHHhccCCHHHHHHHHH--cC-CCCC-CCCCCCCCHHHHHHHcCCCCHHHHHHHHH--cCCCCCCCCCCC
Confidence 5679999999865 468899999999 77 7777 789999999999999995 599999999 899999999999
Q ss_pred CcHHHHH-------------------------------------HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 82 NTAFCFA-------------------------------------VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 82 ~TpLh~A-------------------------------------~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
.||||+| ++.|+.++++.|+++|+++ +.+|.+|+||||+|+.
T Consensus 248 ~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdI-N~kD~~G~TPLH~Aaa 326 (764)
T PHA02716 248 MSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKL-HYKDSAGRTCLHQYIL 326 (764)
T ss_pred CCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCce-eccCCCCCCHHHHHHH
Confidence 9999975 3457889999999999997 8999999999999874
Q ss_pred --cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh-------------cCcHHHHHHHHHhCCCcccccCCCCchHHHH
Q 044420 125 --LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS-------------TDLHDLALKLLEDHSGLAVARDGNYETALHV 189 (545)
Q Consensus 125 --~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~-------------~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~ 189 (545)
.++.+++++|+++|++++..+..|.||||.++.. .+. ..+.++|.+.|++++.+|..|.||||.
T Consensus 327 ~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~-~eVVklLL~~GADIn~kn~~G~TPLh~ 405 (764)
T PHA02716 327 RHNISTDIIKLLHEYGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIR-LDVIQCLISLGADITAVNCLGYTPLTS 405 (764)
T ss_pred HhCCCchHHHHHHHcCCCCccCCCCCCCHHHHHHHhhhhhccccccccccCh-HHHHHHHHHCCCCCCCcCCCCCChHHH
Confidence 4689999999999999999999999999998652 123 456677788999999999999999994
Q ss_pred H-HhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcC----Cc--hhhhhhccCCChHHHHHHhcCcHH----------
Q 044420 190 L-ARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR----DD--SEFTDLIRKPSHLLFDAAELGNFE---------- 252 (545)
Q Consensus 190 A-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~----~~--~~~~~~~~~g~tpLh~A~~~g~~~---------- 252 (545)
+ +...+.. ..++++.|++..... .. ......+..+.. +|.++..++.+
T Consensus 406 y~~~a~n~~--------------~~dIvklLis~~~~~~~~~~~~q~ll~~~d~~~~~-lhh~~a~~~~~~~~~~~~~~~ 470 (764)
T PHA02716 406 YICTAQNYM--------------YYDIIDCLISDKVLNMVKHRILQDLLIRVDDTPCI-IHHIIAKYNIPTDLYTDEYEP 470 (764)
T ss_pred HHHHHHhcC--------------hHHHHHHHHhCcchhhhhhhhhhhhhhccCcchhh-HHHHHHhcCcchhhhhhhhhh
Confidence 3 2221110 334555444422110 00 001111222222 45555444332
Q ss_pred --------HHHHHHHHCCCcccccccCCCcHHHHHHHhCch-----HHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 253 --------FLAELICSYPDLVHELDDNNRSIFHIAVLHRHA-----NIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 253 --------~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~-----~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
++..++..+.+ ++..|..|+||||+|+.+|+. +++++|++.|++ +|.+|++|+||||+|+++
T Consensus 471 ~~~~~~~~v~~~~ii~~~n-vN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GAD----IN~~d~~G~TPLh~A~~~ 545 (764)
T PHA02716 471 YDSTKIHDVYHCAIIERYN-NAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYN----INIPTKNGVTPLMLTMRN 545 (764)
T ss_pred ccccccchhhHHHHHhhcc-ccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCC----CcccCCCCCCHHHHHHHc
Confidence 23333444555 678899999999999999876 455999999999 888999999999999999
Q ss_pred CCC-----Ccccccc
Q 044420 320 PHP-----SRVSIVS 329 (545)
Q Consensus 320 ~~~-----~~~~~L~ 329 (545)
|+. ++++.|+
T Consensus 546 g~~~~~~~eIvk~LL 560 (764)
T PHA02716 546 NRLSGHQWYIVKNIL 560 (764)
T ss_pred CCccccHHHHHHHHH
Confidence 987 5666553
|
|
| >PHA03095 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=344.60 Aligned_cols=267 Identities=16% Similarity=0.067 Sum_probs=239.9
Q ss_pred ccccCCHHhHHHHHcC---ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcC-CHHHHHHHHHcCCCcccccccCC
Q 044420 5 VYLNICVPLQKAALKG---NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGAR-QTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g---~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
.+..|.||||.|+..| +.++++.|++ .| .+++ .++..|.||||+|+..| +.+++++|++ +|++++.+|..
T Consensus 43 ~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~--~G-adin-~~~~~g~TpLh~A~~~~~~~~iv~lLl~--~ga~in~~~~~ 116 (471)
T PHA03095 43 RGEYGKTPLHLYLHYSSEKVKDIVRLLLE--AG-ADVN-APERCGFTPLHLYLYNATTLDVIKLLIK--AGADVNAKDKV 116 (471)
T ss_pred CCCCCCCHHHHHHHhcCCChHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcCCcHHHHHHHHH--cCCCCCCCCCC
Confidence 3456899999999999 9999999999 77 7776 77889999999999999 5999999999 89999999999
Q ss_pred CCcHHHHHH--HhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC--CHHHHHHHHHcccCCccCCCCChhhHHHHH
Q 044420 81 GNTAFCFAV--AAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA--QRDMALYLYDDAKAKDNLTPEDQNALFFTC 156 (545)
Q Consensus 81 g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa 156 (545)
|.||||+|+ ..++.+++++|+++|+++ +.+|..|.||||+|+..+ +.+++++|+++|+++...+..|.||+|+++
T Consensus 117 g~tpLh~a~~~~~~~~~iv~~Ll~~gad~-~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~ 195 (471)
T PHA03095 117 GRTPLHVYLSGFNINPKVIRLLLRKGADV-NALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHL 195 (471)
T ss_pred CCCHHHHHhhCCcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence 999999999 556899999999999997 899999999999999876 689999999999998888999999999999
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
........+.+.|.+.|++++.+|..|.||||+|+..|+.. .. .++.++..+ .+++.+|.
T Consensus 196 ~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~---------------~~----~v~~ll~~g-~din~~d~ 255 (471)
T PHA03095 196 QSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCK---------------RS----LVLPLLIAG-ISINARNR 255 (471)
T ss_pred HHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCch---------------HH----HHHHHHHcC-CCCCCcCC
Confidence 87655577888899999999999999999999999988542 12 234444444 56677889
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh
Q 044420 237 KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 299 (545)
.|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+.++++.|++.+++.+
T Consensus 256 ~g~TpLh~A~~~~~~~~v~~LL~~gad-~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~~~~~ 317 (471)
T PHA03095 256 YGQTPLHYAAVFNNPRACRRLIALGAD-INAVSSDGNTPLSLMVRNNNGRAVRAALAKNPSAE 317 (471)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHhCCHHHHHHHHHhCCCHH
Confidence 999999999999999999999999999 99999999999999999999999999999998854
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=346.65 Aligned_cols=335 Identities=13% Similarity=0.020 Sum_probs=246.2
Q ss_pred cccccCCHHhHHHHHc---CChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCccccc
Q 044420 4 NVYLNICVPLQKAALK---GNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTG----FVEELLKLMKPEDLTL 76 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~---g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~ 76 (545)
..+.+|+||||+||.. |+.++|+.|++ ++ ++++ ..+..|+||||.|+..|+.+ +++.|++ .+...+.
T Consensus 27 ~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~--~g-a~v~-~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~--~~~~~n~ 100 (661)
T PHA02917 27 TRNQFKNNALHAYLFNEHCNNVEVVKLLLD--SG-TNPL-HKNWRQLTPLEEYTNSRHVKVNKDIAMALLE--ATGYSNI 100 (661)
T ss_pred ccCCCCCcHHHHHHHhhhcCcHHHHHHHHH--CC-CCcc-ccCCCCCCHHHHHHHcCChhHHHHHHHHHHh--ccCCCCC
Confidence 3467799999998665 88999999999 77 7776 78999999999999999954 5678887 3333444
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH--HcCCHHHHHHHHHcccCCccCCC---CC---
Q 044420 77 QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA--VLAQRDMALYLYDDAKAKDNLTP---ED--- 148 (545)
Q Consensus 77 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~---~~--- 148 (545)
.+ ..+++|.|+.+|+.++|++|+++|+++ +.+|.+|.||||.|+ ..|+.+++++|+++|++++..+. .|
T Consensus 101 ~~--~~~~~~~a~~~~~~e~vk~Ll~~Gadi-n~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~ 177 (661)
T PHA02917 101 ND--FNIFSYMKSKNVDVDLIKVLVEHGFDL-SVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAY 177 (661)
T ss_pred CC--cchHHHHHhhcCCHHHHHHHHHcCCCC-CccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccc
Confidence 33 337788899999999999999999998 899999999999654 57899999999999999765433 23
Q ss_pred --------hhhHHHHHHhc---------CcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCc--cccccchh----
Q 044420 149 --------QNALFFTCIST---------DLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAF--ASRNQGLL---- 205 (545)
Q Consensus 149 --------~t~l~~aa~~~---------~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~--~~~~~~~~---- 205 (545)
+||||+|+... .....+.++|.+.|++++.+|.+|.||||+|+..|+.+ .++.+...
T Consensus 178 ~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~d~~ 257 (661)
T PHA02917 178 DDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGIDNT 257 (661)
T ss_pred ccccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCCccc
Confidence 59999998732 11356788999999999999999999999999999863 44433220
Q ss_pred --------hHhH----H------------HHHHHHHHHHHHHhcCCc---------hh-----hhhhccCCChHHHHHH-
Q 044420 206 --------TRLM----H------------SALQLVKSLWEAILKRDD---------SE-----FTDLIRKPSHLLFDAA- 246 (545)
Q Consensus 206 --------~~~~----~------------~~~~~~~~l~~~l~~~~~---------~~-----~~~~~~~g~tpLh~A~- 246 (545)
.+.. + -..++++.|++.+...+. .+ .......+.+++|.+.
T Consensus 258 ~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 337 (661)
T PHA02917 258 AYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIE 337 (661)
T ss_pred ccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHH
Confidence 0000 0 033445555554432110 00 0001223445555444
Q ss_pred --hcCc--HHHHHHHHHHCCCc-----------------------------ccccccCCCcHHHHHHHhC----------
Q 044420 247 --ELGN--FEFLAELICSYPDL-----------------------------VHELDDNNRSIFHIAVLHR---------- 283 (545)
Q Consensus 247 --~~g~--~~~v~~Ll~~~~~~-----------------------------~~~~d~~G~t~Lh~A~~~~---------- 283 (545)
..|. .++++.|+++|++. ++..+.+|+||||.|++.+
T Consensus 338 ~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~ 417 (661)
T PHA02917 338 YMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYT 417 (661)
T ss_pred HHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhh
Confidence 3554 45778887777650 2233456999999987543
Q ss_pred -------------chHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhc
Q 044420 284 -------------HANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQ 350 (545)
Q Consensus 284 -------------~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~ 350 (545)
..+++++|+++|++ +|.+|..|+||||+|+..++.+++++|. ..
T Consensus 418 ~~~~~~~~~~~~~~~~~v~~Ll~~GAd----IN~kd~~G~TpLh~Aa~~~~~~~v~~Ll-------------------~~ 474 (661)
T PHA02917 418 YKKGLCDMSYACPILSTINICLPYLKD----INMIDKRGETLLHKAVRYNKQSLVSLLL-------------------ES 474 (661)
T ss_pred hhhccchhhhhhhhHHHHHHHHHCCCC----CCCCCCCCcCHHHHHHHcCCHHHHHHHH-------------------HC
Confidence 35678999999998 7889999999999999988888777663 24
Q ss_pred CccccccCCCCCChhhhhHh
Q 044420 351 PTFREMKNSEGKTPRELFSI 370 (545)
Q Consensus 351 ~~~~~~~n~~G~Tpl~~a~~ 370 (545)
|++++.+|..|+|||++|..
T Consensus 475 GAdin~~d~~G~T~L~~A~~ 494 (661)
T PHA02917 475 GSDVNIRSNNGYTCIAIAIN 494 (661)
T ss_pred cCCCCCCCCCCCCHHHHHHH
Confidence 88999999999999999985
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=341.09 Aligned_cols=277 Identities=18% Similarity=0.188 Sum_probs=224.8
Q ss_pred CChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH-----HHHhCCH
Q 044420 20 GNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF-----AVAAGSI 94 (545)
Q Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~-----A~~~g~~ 94 (545)
...+.++++++ .+ . .+...+..+.||||.|++.|+.++|++|++ .|++++..+..|.||||+ |+..|+.
T Consensus 13 ~~~~~~~~~~~--~~-~-~~~~~~~~~~t~L~~A~~~~~~~ivk~Ll~--~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~ 86 (480)
T PHA03100 13 IKVKNIKYIIM--ED-D-LNDYSYKKPVLPLYLAKEARNIDVVKILLD--NGADINSSTKNNSTPLHYLSNIKYNLTDVK 86 (480)
T ss_pred HHHHHHHHHHh--cC-c-cchhhhcccchhhhhhhccCCHHHHHHHHH--cCCCCCCccccCcCHHHHHHHHHHHhhchH
Confidence 44567777777 33 2 333567788888888888888888888888 788888888888888888 8888888
Q ss_pred HHHHHHHHcCcccccCCCCCCCcHHHHHH--HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhC
Q 044420 95 HIAKIMLKKNERLLTMRGGENMTPLYMAA--VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDH 172 (545)
Q Consensus 95 ~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~ 172 (545)
++++.|+++|+++ +..|..|.||||+|+ ..|+.+++++|+++|++++..+..|.||+|.|+..+.....+.++|.+.
T Consensus 87 ~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~ 165 (480)
T PHA03100 87 EIVKLLLEYGANV-NAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDK 165 (480)
T ss_pred HHHHHHHHCCCCC-CCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHC
Confidence 8888888888887 788888888888888 8888888888888888888888888888888887763224566777778
Q ss_pred CCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCC------ChHHHHHH
Q 044420 173 SGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKP------SHLLFDAA 246 (545)
Q Consensus 173 ~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g------~tpLh~A~ 246 (545)
|++++.+|..|.||||+|+..|+. +++ +.+++.+ .+....+..| .||||.|+
T Consensus 166 g~din~~d~~g~tpL~~A~~~~~~-----------------~iv----~~Ll~~g-a~~~~~~~~~~~~~~~~t~l~~a~ 223 (480)
T PHA03100 166 GVDINAKNRYGYTPLHIAVEKGNI-----------------DVI----KFLLDNG-ADINAGDIETLLFTIFETPLHIAA 223 (480)
T ss_pred CCCcccccCCCCCHHHHHHHhCCH-----------------HHH----HHHHHcC-CCccCCCCCCCcHHHHHhHHHHHH
Confidence 888888888888888888888844 333 4444444 3344455666 89999999
Q ss_pred hcCc--HHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCc
Q 044420 247 ELGN--FEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSR 324 (545)
Q Consensus 247 ~~g~--~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 324 (545)
..|+ .+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++ +|.+|..|+||||+|++.++.++
T Consensus 224 ~~~~~~~~iv~~Ll~~g~d-in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad----~n~~d~~g~tpl~~A~~~~~~~i 298 (480)
T PHA03100 224 CYNEITLEVVNYLLSYGVP-INIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN----PNLVNKYGDTPLHIAILNNNKEI 298 (480)
T ss_pred HhCcCcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCccCCCCCcHHHHHHHhCCHHH
Confidence 9999 9999999999998 888999999999999999999999999999998 77899999999999999999988
Q ss_pred cccccc
Q 044420 325 VSIVSG 330 (545)
Q Consensus 325 ~~~L~~ 330 (545)
+++|.+
T Consensus 299 v~~Ll~ 304 (480)
T PHA03100 299 FKLLLN 304 (480)
T ss_pred HHHHHh
Confidence 888854
|
|
| >PHA02874 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-39 Score=330.41 Aligned_cols=284 Identities=14% Similarity=0.123 Sum_probs=242.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcC----------------
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM---------------- 69 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~---------------- 69 (545)
..+|.||||.|++.|+.++|++|++ .| .+++ ..+..|.||||.|+..|+.+++++|++..
T Consensus 32 ~~~~~tpL~~A~~~g~~~iv~~Ll~--~G-a~~n-~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i 107 (434)
T PHA02874 32 VDETTTPLIDAIRSGDAKIVELFIK--HG-ADIN-HINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMI 107 (434)
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHH
Confidence 4568999999999999999999999 67 6665 67889999999999999999999999721
Q ss_pred -----CCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC
Q 044420 70 -----KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL 144 (545)
Q Consensus 70 -----~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~ 144 (545)
.|++++.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..
T Consensus 108 ~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~ 186 (434)
T PHA02874 108 KTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVK 186 (434)
T ss_pred HHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCC
Confidence 23456788999999999999999999999999999997 899999999999999999999999999999998889
Q ss_pred CCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHh
Q 044420 145 TPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAIL 224 (545)
Q Consensus 145 ~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 224 (545)
+..|.||||.|+..+. ..+.++|.+.|++++.++..|.||||.|+..+.. . ++.++
T Consensus 187 ~~~g~tpL~~A~~~g~--~~iv~~Ll~~g~~i~~~~~~g~TpL~~A~~~~~~------------------~----i~~Ll 242 (434)
T PHA02874 187 DNNGESPLHNAAEYGD--YACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRS------------------A----IELLI 242 (434)
T ss_pred CCCCCCHHHHHHHcCC--HHHHHHHHhCCCCCcCCCCCCCCHHHHHHHCChH------------------H----HHHHH
Confidence 9999999999998866 3567888889999999999999999999987632 1 22333
Q ss_pred cCCchhhhhhccCCChHHHHHHhcC-cHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC-chHHHHHHHhhccchhhhh
Q 044420 225 KRDDSEFTDLIRKPSHLLFDAAELG-NFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR-HANIFNLIYEIGFTKELMA 302 (545)
Q Consensus 225 ~~~~~~~~~~~~~g~tpLh~A~~~g-~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~-~~~iv~~Ll~~g~~~~~~~ 302 (545)
. + .+++.+|..|.||||+|+..+ +.+++++|+++|++ ++.+|..|+||||+|+..+ +.++++.|++.+.. +
T Consensus 243 ~-~-~~in~~d~~G~TpLh~A~~~~~~~~iv~~Ll~~gad-~n~~d~~g~TpL~~A~~~~~~~~~ik~ll~~~~~----~ 315 (434)
T PHA02874 243 N-N-ASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKAD-ISIKDNKGENPIDTAFKYINKDPVIKDIIANAVL----I 315 (434)
T ss_pred c-C-CCCCCcCCCCCCHHHHHHhcCCcHHHHHHHHHCcCC-CCCCCCCCCCHHHHHHHhCCccHHHHHHHHhcCc----h
Confidence 2 2 456778899999999999876 89999999999999 9999999999999999987 77899999998876 4
Q ss_pred hcccCCC-CChhhhhccCCCCCcc
Q 044420 303 TFKDHDQ-NNMLHLAAKSPHPSRV 325 (545)
Q Consensus 303 n~~d~~G-~TpLh~A~~~~~~~~~ 325 (545)
+..+..+ .+++..+....+.+..
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~ 339 (434)
T PHA02874 316 KEADKLKDSDFLEHIEIKDNKEFS 339 (434)
T ss_pred hhccccchhHHHHHHHHhccchHH
Confidence 4445444 4566666555544443
|
|
| >PHA03100 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=338.47 Aligned_cols=266 Identities=20% Similarity=0.184 Sum_probs=241.3
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHH-----HHHcCCHHHHHHHHHcCCCccccccc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHL-----AAGARQTGFVEELLKLMKPEDLTLQD 78 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~-----A~~~g~~~~v~~Ll~~~~~~~~~~~d 78 (545)
..+.++.||||.|++.|+.++|+.|++ .| .+++ ..+..|.||||+ |+..|+.+++++|++ .|++++..|
T Consensus 30 ~~~~~~~t~L~~A~~~~~~~ivk~Ll~--~g-~~~~-~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~--~ga~i~~~d 103 (480)
T PHA03100 30 YSYKKPVLPLYLAKEARNIDVVKILLD--NG-ADIN-SSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANVNAPD 103 (480)
T ss_pred hhhcccchhhhhhhccCCHHHHHHHHH--cC-CCCC-CccccCcCHHHHHHHHHHHhhchHHHHHHHHH--CCCCCCCCC
Confidence 445679999999999999999999999 67 6666 678889999999 999999999999999 899999999
Q ss_pred CCCCcHHHHHH--HhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC--CHHHHHHHHHcccCCccCCCCChhhHHH
Q 044420 79 RNGNTAFCFAV--AAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA--QRDMALYLYDDAKAKDNLTPEDQNALFF 154 (545)
Q Consensus 79 ~~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~~t~l~~ 154 (545)
..|.||||+|+ ..|+.+++++|+++|+++ +..+..|.||||+|+..| +.+++++|+++|++++..+..|.||||+
T Consensus 104 ~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~~d~~g~tpL~~ 182 (480)
T PHA03100 104 NNGITPLLYAISKKSNSYSIVEYLLDNGANV-NIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRYGYTPLHI 182 (480)
T ss_pred CCCCchhhHHHhcccChHHHHHHHHHcCCCC-CccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCcccccCCCCCHHHH
Confidence 99999999999 999999999999999997 899999999999999999 9999999999999999899999999999
Q ss_pred HHHhcCcHHHHHHHHHhCCCcccccCCCC------chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc
Q 044420 155 TCISTDLHDLALKLLEDHSGLAVARDGNY------ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 155 aa~~~~~~~~~~~lL~~~~~~~~~~d~~g------~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 228 (545)
|+..+. ..+.++|.++|++++..+..| .||||.|+..++. ..+++ +.+++.+
T Consensus 183 A~~~~~--~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~---------------~~~iv----~~Ll~~g- 240 (480)
T PHA03100 183 AVEKGN--IDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEI---------------TLEVV----NYLLSYG- 240 (480)
T ss_pred HHHhCC--HHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcC---------------cHHHH----HHHHHcC-
Confidence 999875 466788888999999999999 9999999999862 13444 4444554
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 299 (545)
.+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|++.+
T Consensus 241 ~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad-~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~~i~ 310 (480)
T PHA03100 241 VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGAN-PNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIK 310 (480)
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHHhCCHHHHHHHHhcCCCHH
Confidence 45566778999999999999999999999999998 99999999999999999999999999999999854
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=334.75 Aligned_cols=304 Identities=16% Similarity=0.072 Sum_probs=231.1
Q ss_pred hHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC
Q 044420 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG 92 (545)
Q Consensus 13 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 92 (545)
|+.+....+.+.+...++.-..........+..+.||||.|++.|+.++|++|++ .|++++.+|..|.||||+||..|
T Consensus 4 ~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~tPLh~A~~~g~~e~vk~Ll~--~gadvn~~d~~g~TpLh~A~~~g 81 (477)
T PHA02878 4 LYKSMYTDNYETILKYIEYIDHTENYSTSASLIPFIPLHQAVEARNLDVVKSLLT--RGHNVNQPDHRDLTPLHIICKEP 81 (477)
T ss_pred HHHHHHhccHHHHHHHHHHHhhhhhhcCcccccCcchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHCc
Confidence 5566666666545555541100011112334568899999999999999999999 79999999999999999999999
Q ss_pred CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhC
Q 044420 93 SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDH 172 (545)
Q Consensus 93 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~ 172 (545)
+.++++.|++.+.+. .. ..+.+|++.|+..++.+++++|+..+.+... ..+...+............+.++|.++
T Consensus 82 ~~~~v~~Ll~~~~~~-~~--~~~~~~l~~a~~~~~~ei~~~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~iv~~Ll~~ 156 (477)
T PHA02878 82 NKLGMKEMIRSINKC-SV--FYTLVAIKDAFNNRNVEIFKIILTNRYKNIQ--TIDLVYIDKKSKDDIIEAEITKLLLSY 156 (477)
T ss_pred cHhHHHHHHHHHhcc-cc--ccchhhHHHHHHcCCHHHHHHHHhCcccCcc--cCcHHHHhhccchhhHHHHHHHHHHHc
Confidence 999999999987664 22 5678999999999999999999987653111 111111111111111112467888889
Q ss_pred CCcccccCCC-CchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcH
Q 044420 173 SGLAVARDGN-YETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNF 251 (545)
Q Consensus 173 ~~~~~~~d~~-g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~ 251 (545)
|++++.+|.+ |.||||+|+..|+. ++ ++.+++.+ .+++..|..|.||||.|++.|+.
T Consensus 157 gadin~~~~~~g~tpLh~A~~~~~~-----------------~i----v~~Ll~~g-ad~n~~d~~g~tpLh~A~~~~~~ 214 (477)
T PHA02878 157 GADINMKDRHKGNTALHYATENKDQ-----------------RL----TELLLSYG-ANVNIPDKTNNSPLHHAVKHYNK 214 (477)
T ss_pred CCCCCccCCCCCCCHHHHHHhCCCH-----------------HH----HHHHHHCC-CCCCCcCCCCCCHHHHHHHhCCH
Confidence 9999999998 99999999999854 33 44455555 45667788999999999999999
Q ss_pred HHHHHHHHHCCCcccccccCCCcHHHHHHHh-CchHHHHHHHhhccchhhhhhcccC-CCCChhhhhccCCCCCcccccc
Q 044420 252 EFLAELICSYPDLVHELDDNNRSIFHIAVLH-RHANIFNLIYEIGFTKELMATFKDH-DQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 252 ~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~-~~~~iv~~Ll~~g~~~~~~~n~~d~-~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
+++++|++.|++ ++.+|..|+||||+|+.. ++.+++++|+++|++ +|.++. .|+||||+|+ ++.+++++|.
T Consensus 215 ~iv~~Ll~~ga~-in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad----vn~~~~~~g~TpLh~A~--~~~~~v~~Ll 287 (477)
T PHA02878 215 PIVHILLENGAS-TDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD----VNAKSYILGLTALHSSI--KSERKLKLLL 287 (477)
T ss_pred HHHHHHHHcCCC-CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC----CCccCCCCCCCHHHHHc--cCHHHHHHHH
Confidence 999999999999 899999999999999976 689999999999998 677775 7999999994 4455555542
Q ss_pred chhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 330 GAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 330 ~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
-.|++++.+|.+|+||+|+|+++
T Consensus 288 -------------------~~gadin~~d~~g~TpL~~A~~~ 310 (477)
T PHA02878 288 -------------------EYGADINSLNSYKLTPLSSAVKQ 310 (477)
T ss_pred -------------------HCCCCCCCcCCCCCCHHHHHHHH
Confidence 24789999999999999999864
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=269.55 Aligned_cols=211 Identities=19% Similarity=0.172 Sum_probs=186.2
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
++.++.+.+|+......|+.+++ ..+ ..++...|.+|+||||+||..|+.++|++|++. .+..+|.+|..|+||||+
T Consensus 2 e~~~~~~~~~~~~~~~kveel~~-s~~-kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhi 78 (226)
T KOG4412|consen 2 EYASLGKAICENCEEFKVEELIQ-SDP-KSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHI 78 (226)
T ss_pred CccchHHHHHhhchHHHHHHHHh-cCh-hhhhccccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhh
Confidence 46789999999999999999999 566 667756677999999999999999999999975 788999999999999999
Q ss_pred HHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 88 AVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
||..|+.|+|+.|+.+ |+++ +..++.|+||||||+..|..|++++|+++|+.
T Consensus 79 a~s~g~~evVk~Ll~r~~adv-na~tn~G~T~LHyAagK~r~eIaqlLle~ga~-------------------------- 131 (226)
T KOG4412|consen 79 AASNGNDEVVKELLNRSGADV-NATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-------------------------- 131 (226)
T ss_pred hhhcCcHHHHHHHhcCCCCCc-ceecCCCcceehhhhcCChhhHHHHHHhcCCC--------------------------
Confidence 9999999999999999 9997 99999999999999999999999999999874
Q ss_pred HHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHH
Q 044420 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAA 246 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~ 246 (545)
++. +|..|.||||.|+
T Consensus 132 ---------i~~-------------------------------------------------------kD~~~qtplHRAA 147 (226)
T KOG4412|consen 132 ---------IRI-------------------------------------------------------KDKQGQTPLHRAA 147 (226)
T ss_pred ---------Ccc-------------------------------------------------------cccccCchhHHHH
Confidence 122 2355677777788
Q ss_pred hcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhcc
Q 044420 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318 (545)
Q Consensus 247 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~ 318 (545)
..|+.+++++|+..++. +|.+|+.|+||||.|...++.++..+|+++|++ +...|++| ||+-.|+-
T Consensus 148 avGklkvie~Li~~~a~-~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd----~~~edke~-t~~~~a~~ 213 (226)
T KOG4412|consen 148 AVGKLKVIEYLISQGAP-LNTQDKYGFTPLHHALAEGHPDVAVLLVRAGAD----TDREDKEG-TALRIACN 213 (226)
T ss_pred hccchhhHHHHHhcCCC-CCcccccCccHHHHHHhccCchHHHHHHHhccc----eeeccccC-chHHHHHH
Confidence 88888999999999988 899999999999999888899999999999988 66788888 99777654
|
|
| >PHA02878 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-38 Score=328.69 Aligned_cols=312 Identities=15% Similarity=0.087 Sum_probs=244.8
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+..+.||||.||+.|+.++|+.|++ .+ .+++ ..|..|.||||+||..|+.+.++.|++ .+...+. ..+.+|+
T Consensus 34 ~~~~~tPLh~A~~~g~~e~vk~Ll~--~g-advn-~~d~~g~TpLh~A~~~g~~~~v~~Ll~--~~~~~~~--~~~~~~l 105 (477)
T PHA02878 34 SLIPFIPLHQAVEARNLDVVKSLLT--RG-HNVN-QPDHRDLTPLHIICKEPNKLGMKEMIR--SINKCSV--FYTLVAI 105 (477)
T ss_pred cccCcchHHHHHHcCCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHCccHhHHHHHHH--HHhcccc--ccchhhH
Confidence 3468899999999999999999999 67 7776 789999999999999999999999999 4443333 5678999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc--CCHHHHHHHHHcccCCccCCCC-ChhhHHHHHHhcCcH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL--AQRDMALYLYDDAKAKDNLTPE-DQNALFFTCISTDLH 162 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~~~~~-~~t~l~~aa~~~~~~ 162 (545)
|.|+..|+.++++.|+..+.+.....+ ...+..+... .+.+++++|+++|++++..+.. |.||||+|+..+..
T Consensus 106 ~~a~~~~~~ei~~~Ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~- 181 (477)
T PHA02878 106 KDAFNNRNVEIFKIILTNRYKNIQTID---LVYIDKKSKDDIIEAEITKLLLSYGADINMKDRHKGNTALHYATENKDQ- 181 (477)
T ss_pred HHHHHcCCHHHHHHHHhCcccCcccCc---HHHHhhccchhhHHHHHHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCH-
Confidence 999999999999999988654211111 1111111112 2356999999999999999988 99999999987653
Q ss_pred HHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 163 DLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
.+.++|.++|++++.+|..|.||||.|+..++. ++ ++.+++.+ .+++.+|..|.|||
T Consensus 182 -~iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~-----------------~i----v~~Ll~~g-a~in~~d~~g~TpL 238 (477)
T PHA02878 182 -RLTELLLSYGANVNIPDKTNNSPLHHAVKHYNK-----------------PI----VHILLENG-ASTDARDKCGNTPL 238 (477)
T ss_pred -HHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCH-----------------HH----HHHHHHcC-CCCCCCCCCCCCHH
Confidence 566777789999999999999999999999854 44 44455555 55667789999999
Q ss_pred HHHHhc-CcHHHHHHHHHHCCCccccccc-CCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 243 FDAAEL-GNFEFLAELICSYPDLVHELDD-NNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 243 h~A~~~-g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
|+|+.. ++.+++++|+++|++ ++.++. .|.||||+| .++.+++++|+++|++ +|.+|.+|+||||+|++.+
T Consensus 239 h~A~~~~~~~~iv~~Ll~~gad-vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gad----in~~d~~g~TpL~~A~~~~ 311 (477)
T PHA02878 239 HISVGYCKDYDILKLLLEHGVD-VNAKSYILGLTALHSS--IKSERKLKLLLEYGAD----INSLNSYKLTPLSSAVKQY 311 (477)
T ss_pred HHHHHhcCCHHHHHHHHHcCCC-CCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHHc
Confidence 999976 799999999999999 888876 799999999 5788999999999999 7889999999999999854
Q ss_pred -CCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 321 -HPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 321 -~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
..++.+.|..... +....+.+.++.+|.++-.-+.+..+
T Consensus 312 ~~~~~~~~li~~~~--------------~~~~~~~~~~~~~g~~~n~~~i~~~~ 351 (477)
T PHA02878 312 LCINIGRILISNIC--------------LLKRIKPDIKNSEGFIDNMDCITSNK 351 (477)
T ss_pred CccchHHHHHHHHH--------------HHHhccCcccCcHHHHHHHHHHhccH
Confidence 3455554432100 01134567788888877655555443
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=326.10 Aligned_cols=279 Identities=14% Similarity=0.139 Sum_probs=233.0
Q ss_pred cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHc--CCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC----
Q 044420 19 KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGA--RQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG---- 92 (545)
Q Consensus 19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g---- 92 (545)
..+.++|+.|++ +| .+++. . .+|.||||.++.. ++.++|++|++ +|+++|.++ .+.||||.|+.++
T Consensus 13 ~~~~~~v~~LL~--~G-advN~-~-~~g~t~l~~~~~~~~~~~~iv~~Ll~--~GAdvn~~~-~~~tpL~~a~~~~~~~~ 84 (494)
T PHA02989 13 TVDKNALEFLLR--TG-FDVNE-E-YRGNSILLLYLKRKDVKIKIVKLLID--NGADVNYKG-YIETPLCAVLRNREITS 84 (494)
T ss_pred cCcHHHHHHHHH--cC-CCccc-c-cCCCCHHHHHHhcCCCChHHHHHHHH--cCCCccCCC-CCCCcHHHHHhccCcch
Confidence 578999999999 78 88773 4 5699999876554 37899999999 899999887 6799999998754
Q ss_pred --CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc---CCHHHHHHHHHcccCC-ccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 93 --SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL---AQRDMALYLYDDAKAK-DNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 93 --~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~-~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
+.+++++|+++|+++ +.+|..|.||||.|+.. |+.+++++|+++|+|+ +..+..|.||||+++........+.
T Consensus 85 ~~~~~iv~~Ll~~Gadi-n~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv 163 (494)
T PHA02989 85 NKIKKIVKLLLKFGADI-NLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVI 163 (494)
T ss_pred hhHHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHH
Confidence 478999999999997 89999999999998765 6799999999999998 6788999999999987654335667
Q ss_pred HHHHhCCCcccc-cCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 167 KLLEDHSGLAVA-RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 167 ~lL~~~~~~~~~-~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
++|.++|++++. .+..|.||||.|+..+.... ..++++ .+++.+ .+++..+..|.||||.+
T Consensus 164 ~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~-------------~~~iv~----~Ll~~G-a~vn~~~~~~~t~l~~~ 225 (494)
T PHA02989 164 KILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVI-------------SIKVIK----YLIKKG-VNIETNNNGSESVLESF 225 (494)
T ss_pred HHHHHcCCCccccccccCCChHHHHHhcccccc-------------cHHHHH----HHHhCC-CCccccCCccccHHHHH
Confidence 888899999988 68899999999987652211 234444 444455 44556667899999987
Q ss_pred HhcC------cHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 246 AELG------NFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 246 ~~~g------~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
+..+ ..+++++|++ +++ ++.+|..|+||||+|+..++.+++++|+++|++ +|.+|..|+||||+|++.
T Consensus 226 ~~~~~~~~~~~~~il~~l~~-~ad-vn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad----in~~d~~G~TpL~~A~~~ 299 (494)
T PHA02989 226 LDNNKILSKKEFKVLNFILK-YIK-INKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD----IYNVSKDGDTVLTYAIKH 299 (494)
T ss_pred HHhchhhcccchHHHHHHHh-CCC-CCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC----ccccCCCCCCHHHHHHHc
Confidence 7643 5678887665 688 999999999999999999999999999999999 788999999999999999
Q ss_pred CCCCccccccc
Q 044420 320 PHPSRVSIVSG 330 (545)
Q Consensus 320 ~~~~~~~~L~~ 330 (545)
++.++++.|.+
T Consensus 300 ~~~~iv~~LL~ 310 (494)
T PHA02989 300 GNIDMLNRILQ 310 (494)
T ss_pred CCHHHHHHHHh
Confidence 99999988754
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=297.02 Aligned_cols=231 Identities=10% Similarity=0.019 Sum_probs=190.0
Q ss_pred HcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHH
Q 044420 18 LKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIA 97 (545)
Q Consensus 18 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv 97 (545)
-.++.+.+++|++ ++ . ...|.+|+||||+|+..|+.+++++|++ .|++++.++ |.||||+|+..|+.+++
T Consensus 8 ~~~~~~~~~~Lis--~~-a---~~~D~~G~TpLh~Aa~~g~~eiv~~Ll~--~ga~~n~~d--~~TpLh~Aa~~g~~eiV 77 (284)
T PHA02791 8 TWKSKQLKSFLSS--KD-A---FKADVHGHSALYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKIV 77 (284)
T ss_pred ccCHHHHHHHHHh--CC-C---CCCCCCCCcHHHHHHHcCCHHHHHHHHH--CcCCCcCCC--CCCHHHHHHHCCCHHHH
Confidence 3578899999999 55 4 2578999999999999999999999999 788888764 78999999999999999
Q ss_pred HHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccc
Q 044420 98 KIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV 177 (545)
Q Consensus 98 ~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~ 177 (545)
++|++.|+++ +.+|..|+||||+|+..|+.+++++|+++|++++
T Consensus 78 ~lLL~~Gadv-n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin----------------------------------- 121 (284)
T PHA02791 78 KILLFSGMDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM----------------------------------- 121 (284)
T ss_pred HHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC-----------------------------------
Confidence 9999999997 8899999999999999999999999999988743
Q ss_pred ccCCCC-chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc-cCCChHHHHHHhcCcHHHHH
Q 044420 178 ARDGNY-ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI-RKPSHLLFDAAELGNFEFLA 255 (545)
Q Consensus 178 ~~d~~g-~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v~ 255 (545)
.++..| .||||+|+..|+. ++++.| ++.++.. .| ..|.||||+|++.|+.++++
T Consensus 122 ~~~~~g~~TpL~~Aa~~g~~-----------------eivk~L----L~~~~~~---~d~~~g~TpLh~Aa~~g~~eiv~ 177 (284)
T PHA02791 122 FYGKTGWKTSFYHAVMLNDV-----------------SIVSYF----LSEIPST---FDLAILLSCIHITIKNGHVDMMI 177 (284)
T ss_pred ccCCCCCcHHHHHHHHcCCH-----------------HHHHHH----HhcCCcc---cccccCccHHHHHHHcCCHHHHH
Confidence 344444 3666666666643 333333 3322111 11 24799999999999999999
Q ss_pred HHHHHCCCcccccccCCCcH-HHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 256 ELICSYPDLVHELDDNNRSI-FHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 256 ~Ll~~~~~~~~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
.|+++|++ ++.+|..|.|| ||+|+.+|+.+++++|+++|++ +|.+|.+| ||| ++.|++++|++
T Consensus 178 lLL~~gAd-~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~----in~~~~~~-~~l------~~~e~~~~ll~ 241 (284)
T PHA02791 178 LLLDYMTS-TNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDIN----IYSVNLEN-VLL------DDAEIAKMIIE 241 (284)
T ss_pred HHHHCCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCC----CccCcccC-ccC------CCHHHHHHHHH
Confidence 99999999 89999999987 9999999999999999999999 78899955 666 66678887753
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=318.57 Aligned_cols=246 Identities=16% Similarity=0.103 Sum_probs=208.8
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFA 88 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 88 (545)
.+++||.|++.|+.+++++|++ .| .+++ ..+.+|.||||+|+..|+.+++++|++ .|++++..+..+.||||.|
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~--~g-~~~n-~~~~~g~tpL~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~~t~L~~A 75 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLD--IG-INPN-FEIYDGISPIKLAMKFRDSEAIKLLMK--HGAIPDVKYPDIESELHDA 75 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHH--CC-CCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccCCCcccHHHHH
Confidence 5789999999999999999999 66 6665 667789999999999999999999999 7999999889999999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHH
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~l 168 (545)
+..|+.++++.|++.|++..+..+.+|.||||+|+..|+.+++++|+++|+++
T Consensus 76 ~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad~--------------------------- 128 (413)
T PHA02875 76 VEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADP--------------------------- 128 (413)
T ss_pred HHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCCC---------------------------
Confidence 99999999999999998876677888999999999999999999999998863
Q ss_pred HHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhc
Q 044420 169 LEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAEL 248 (545)
Q Consensus 169 L~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~ 248 (545)
+.++.+|.||||+|+..|+. ++ ++.+++.+ .+.+..|..|.||||+|+..
T Consensus 129 --------~~~~~~g~tpLh~A~~~~~~-----------------~~----v~~Ll~~g-~~~~~~d~~g~TpL~~A~~~ 178 (413)
T PHA02875 129 --------DIPNTDKFSPLHLAVMMGDI-----------------KG----IELLIDHK-ACLDIEDCCGCTPLIIAMAK 178 (413)
T ss_pred --------CCCCCCCCCHHHHHHHcCCH-----------------HH----HHHHHhcC-CCCCCCCCCCCCHHHHHHHc
Confidence 34556677777777776643 33 33334444 34455668889999999999
Q ss_pred CcHHHHHHHHHHCCCcccccccCCC-cHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 249 GNFEFLAELICSYPDLVHELDDNNR-SIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 249 g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
|+.+++++|+++|++ ++..+..|. ||+|+|+.+++.+++++|+++|++++. .+..+.+|.|||++++..
T Consensus 179 g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~gad~n~-~~~~~~~~~t~l~~~~~~ 248 (413)
T PHA02875 179 GDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCNI-MFMIEGEECTILDMICNM 248 (413)
T ss_pred CCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCCcCcch-HhhcCCCchHHHHHHHhh
Confidence 999999999999999 888888875 899999999999999999999999775 556688999999988754
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=338.84 Aligned_cols=306 Identities=21% Similarity=0.183 Sum_probs=168.3
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC-----
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDR----- 79 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~----- 79 (545)
.+..|.||||.|+..|+.+++++++. ++ +.++ ..+-.|.||||.|++.+..|++++|++ +|+++..++.
T Consensus 238 ~d~~gl~~lh~a~~~g~~~i~~~l~~--~g-a~~~-~~~vr~~tplh~AA~~~~~e~~~~ll~--~ga~~~~~~~~~kt~ 311 (1143)
T KOG4177|consen 238 KDESGLTPLHVAAFMGHLDIVKLLLQ--HG-ASVN-VSTVRGETPLHMAARAGQVEVCKLLLQ--NGADVLAKARDDQTP 311 (1143)
T ss_pred ccccCccHHHHHHhccchhHHHHHHh--cc-cccC-cccccccCcchhhhccchhhhHhhhhc--cCcccccccccccCh
Confidence 44556777777777777777777776 44 4444 556667777777777777777777776 5555433322
Q ss_pred -------------------------------------------------------------CCCcHHHHHHHhCCHHHHH
Q 044420 80 -------------------------------------------------------------NGNTAFCFAVAAGSIHIAK 98 (545)
Q Consensus 80 -------------------------------------------------------------~g~TpLh~A~~~g~~~iv~ 98 (545)
.|.||+|+|+..|..++++
T Consensus 312 l~~a~~~g~~~i~~~~l~~~~~~~aar~~g~t~lHlaa~~~~~~~~~~l~~~~~~~~~a~~k~~~pl~la~~~g~~~~v~ 391 (1143)
T KOG4177|consen 312 LHIASRLGHEEIVHLLLQAGATPNAARTAGYTPLHLAAKEGQVEVAGALLEHGAQRRQAEEKGFTPLHLAVKSGRVSVVE 391 (1143)
T ss_pred hhhhcccchHHHHHHHhhccCCccccCcCCcccccHhhhhhhHHHHHHhhccccccCcccccCCcchhhhcccCchhHHH
Confidence 2333333344444444444
Q ss_pred HHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccc
Q 044420 99 IMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVA 178 (545)
Q Consensus 99 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~ 178 (545)
+++.+|++. +..++.|.||||.|+..++.++|+.++++|++++..+..|.|++|.++..+. ...+...+.+++.+++.
T Consensus 392 Lll~~ga~~-~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~~~~lG~T~lhvaa~~g~-~~~~~~~l~~~g~~~n~ 469 (1143)
T KOG4177|consen 392 LLLEAGADP-NSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNAKAKLGYTPLHVAAKKGR-YLQIARLLLQYGADPNA 469 (1143)
T ss_pred hhhhccCCc-ccCCCCCcceeeehhhccCcceEEEEeccCCChhhHhhcCCChhhhhhhccc-HhhhhhhHhhcCCCcch
Confidence 444444442 4444445555555555555555555555555555555555666666666654 23444555666677777
Q ss_pred cCCCCchHHHHHHhCCCCccccccchhh---------HhH-------HHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 179 RDGNYETALHVLARKPSAFASRNQGLLT---------RLM-------HSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 179 ~d~~g~tpLh~A~~~~~~~~~~~~~~~~---------~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
.-..|.||||.|+..|+.+....+.... +.. ...... .+.+++.+ .+...++..|+|||
T Consensus 470 ~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~----~~~l~~~g-a~v~~~~~r~~TpL 544 (1143)
T KOG4177|consen 470 VSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKV----AKILLEHG-ANVDLRTGRGYTPL 544 (1143)
T ss_pred hccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHH----HHHHhhcC-CceehhcccccchH
Confidence 7777777777777777654332222100 000 000011 11222222 33344445556666
Q ss_pred HHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCC
Q 044420 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHP 322 (545)
Q Consensus 243 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~ 322 (545)
|.|+..|+.++|++|+++|++ ++.+|+.|+||||.||..|+.+++.+|+++|++ +|..|.+|.||||+|++.|+.
T Consensus 545 h~A~~~g~v~~VkfLLe~gAd-v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~----vna~d~~g~TpL~iA~~lg~~ 619 (1143)
T KOG4177|consen 545 HVAVHYGNVDLVKFLLEHGAD-VNAKDKLGYTPLHQAAQQGHNDIAELLLKHGAS----VNAADLDGFTPLHIAVRLGYL 619 (1143)
T ss_pred HHHHhcCCchHHHHhhhCCcc-ccccCCCCCChhhHHHHcChHHHHHHHHHcCCC----CCcccccCcchhHHHHHhccc
Confidence 666666666666666666666 556666666666666666666666666666665 555666666666666666666
Q ss_pred Cccccc
Q 044420 323 SRVSIV 328 (545)
Q Consensus 323 ~~~~~L 328 (545)
++++.+
T Consensus 620 ~~~k~l 625 (1143)
T KOG4177|consen 620 SVVKLL 625 (1143)
T ss_pred chhhHH
Confidence 655554
|
|
| >PHA02791 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-36 Score=285.21 Aligned_cols=218 Identities=22% Similarity=0.200 Sum_probs=184.1
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|+||||+|+..|+.++++.|++ .+ .+++ . .+|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~--~g-a~~n-~--~d~~TpLh~Aa~~g~~eiV~lLL~--~Gadvn~~d~~G~T 96 (284)
T PHA02791 25 KADVHGHSALYYAIADNNVRLVCTLLN--AG-ALKN-L--LENEFPLHQAATLEDTKIVKILLF--SGMDDSQFDDKGNT 96 (284)
T ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHH--Cc-CCCc-C--CCCCCHHHHHHHCCCHHHHHHHHH--CCCCCCCCCCCCCC
Confidence 356779999999999999999999999 66 5554 2 347999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCC-CcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGEN-MTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~ 162 (545)
|||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|++++++.
T Consensus 97 pLh~Aa~~g~~eivk~Ll~~gadi-n~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~--------------------- 154 (284)
T PHA02791 97 ALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------------- 154 (284)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCc-CccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc---------------------
Confidence 999999999999999999999998 7788887 58999999999999999999987531
Q ss_pred HHHHHHHHhCCCcccccC-CCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChH
Q 044420 163 DLALKLLEDHSGLAVARD-GNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHL 241 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tp 241 (545)
.| ..|.||||+|+..|+. ++ ++.|++.+ .+.+..+..|.||
T Consensus 155 ----------------~d~~~g~TpLh~Aa~~g~~-----------------ei----v~lLL~~g-Ad~n~~d~~g~t~ 196 (284)
T PHA02791 155 ----------------FDLAILLSCIHITIKNGHV-----------------DM----MILLLDYM-TSTNTNNSLLFIP 196 (284)
T ss_pred ----------------cccccCccHHHHHHHcCCH-----------------HH----HHHHHHCC-CCCCcccCCCCCh
Confidence 11 2467888888888754 23 44445554 3445566777876
Q ss_pred -HHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 242 -LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 242 -Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
||+|+..|+.+++++|+++|++ ++.+|..| ++| ++.|++++|+++-++
T Consensus 197 ~L~~Aa~~~~~e~v~lLl~~Ga~-in~~~~~~-~~l------~~~e~~~~ll~~~~~ 245 (284)
T PHA02791 197 DIKLAIDNKDLEMLQALFKYDIN-IYSVNLEN-VLL------DDAEIAKMIIEKHVE 245 (284)
T ss_pred HHHHHHHcCCHHHHHHHHHCCCC-CccCcccC-ccC------CCHHHHHHHHHhhhh
Confidence 9999999999999999999999 89999855 666 899999999998766
|
|
| >PHA02989 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=311.41 Aligned_cols=266 Identities=15% Similarity=0.106 Sum_probs=222.8
Q ss_pred ccCCHHhHHHHHcC--ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcC------CHHHHHHHHHcCCCccccccc
Q 044420 7 LNICVPLQKAALKG--NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGAR------QTGFVEELLKLMKPEDLTLQD 78 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g------~~~~v~~Ll~~~~~~~~~~~d 78 (545)
.+|.||||.++..+ +.++|+.|++ +| ++++ ..+ .+.||||.|+.++ +.+++++|++ +|+++|.+|
T Consensus 33 ~~g~t~l~~~~~~~~~~~~iv~~Ll~--~G-Advn-~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~--~Gadin~~d 105 (494)
T PHA02989 33 YRGNSILLLYLKRKDVKIKIVKLLID--NG-ADVN-YKG-YIETPLCAVLRNREITSNKIKKIVKLLLK--FGADINLKT 105 (494)
T ss_pred cCCCCHHHHHHhcCCCChHHHHHHHH--cC-CCcc-CCC-CCCCcHHHHHhccCcchhhHHHHHHHHHH--CCCCCCCCC
Confidence 46899998766543 6899999999 78 8887 444 5799999998764 5789999999 899999999
Q ss_pred CCCCcHHHHHHHh---CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc--CCHHHHHHHHHcccCCcc-CCCCChhhH
Q 044420 79 RNGNTAFCFAVAA---GSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL--AQRDMALYLYDDAKAKDN-LTPEDQNAL 152 (545)
Q Consensus 79 ~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~--g~~~iv~~Ll~~~~~~~~-~~~~~~t~l 152 (545)
..|.||||.|+.. |+.+++++|+++|+++.+.+|..|.||||+|+.. ++.+++++|+++|++++. .+..|.||+
T Consensus 106 ~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~g~tpL 185 (494)
T PHA02989 106 FNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLYGLTPM 185 (494)
T ss_pred CCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCccccccccCCChH
Confidence 9999999998865 6799999999999997468899999999999865 689999999999999877 577899999
Q ss_pred HHHHHhc---CcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCch
Q 044420 153 FFTCIST---DLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDS 229 (545)
Q Consensus 153 ~~aa~~~---~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 229 (545)
|.++... +. ..+.++|.+.|++++.+|..|.||||.++..+..... ...++ ++.+.. + .
T Consensus 186 ~~a~~~~~~~~~-~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~-----------~~~~i----l~~l~~-~-a 247 (494)
T PHA02989 186 NIYLRNDIDVIS-IKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSK-----------KEFKV----LNFILK-Y-I 247 (494)
T ss_pred HHHHhccccccc-HHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcc-----------cchHH----HHHHHh-C-C
Confidence 9987654 33 4566888889999999999999999998876531100 01222 333333 3 5
Q ss_pred hhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccch
Q 044420 230 EFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 230 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
+++.+|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.++++.|++.++..
T Consensus 248 dvn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gad-in~~d~~G~TpL~~A~~~~~~~iv~~LL~~~p~~ 315 (494)
T PHA02989 248 KINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDD-IYNVSKDGDTVLTYAIKHGNIDMLNRILQLKPGK 315 (494)
T ss_pred CCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHHHHHHHhcCCCh
Confidence 6778889999999999999999999999999999 9999999999999999999999999999987653
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-36 Score=308.86 Aligned_cols=244 Identities=14% Similarity=0.032 Sum_probs=212.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
++++||.|++.|+.+++++|++ .|++++.++..|.||||+|+..|+.+++++|+++|++. +..+.++.||||.|+..
T Consensus 2 ~~~~L~~A~~~g~~~iv~~Ll~--~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~t~L~~A~~~ 78 (413)
T PHA02875 2 DQVALCDAILFGELDIARRLLD--IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIP-DVKYPDIESELHDAVEE 78 (413)
T ss_pred CchHHHHHHHhCCHHHHHHHHH--CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCc-cccCCCcccHHHHHHHC
Confidence 6799999999999999999999 89999999999999999999999999999999999986 78888999999999999
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
|+.+++++|++.|++.. +..+.+|.||||+|+..|+.
T Consensus 79 g~~~~v~~Ll~~~~~~~----------------------------------~~~~~~g~tpL~~A~~~~~~--------- 115 (413)
T PHA02875 79 GDVKAVEELLDLGKFAD----------------------------------DVFYKDGMTPLHLATILKKL--------- 115 (413)
T ss_pred CCHHHHHHHHHcCCccc----------------------------------ccccCCCCCHHHHHHHhCCH---------
Confidence 99999999999987411 23456789999999998854
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
++ ++.+++.+ .+.+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.
T Consensus 116 --------~i----v~~Ll~~g-ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~~~g~~ 181 (413)
T PHA02875 116 --------DI----MKLLIARG-ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKAC-LDIEDCCGCTPLIIAMAKGDI 181 (413)
T ss_pred --------HH----HHHHHhCC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCH
Confidence 34 44455555 45556778899999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhhccchhhhhhcccCCCC-ChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCcccccc---CCCC
Q 044420 286 NIFNLIYEIGFTKELMATFKDHDQN-NMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMK---NSEG 361 (545)
Q Consensus 286 ~iv~~Ll~~g~~~~~~~n~~d~~G~-TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~---n~~G 361 (545)
+++++|+++|++ ++..+.+|. ||+|+|+..++.+++++|.+. |++++.. +.+|
T Consensus 182 eiv~~Ll~~ga~----~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~-------------------gad~n~~~~~~~~~ 238 (413)
T PHA02875 182 AICKMLLDSGAN----IDYFGKNGCVAALCYAIENNKIDIVRLFIKR-------------------GADCNIMFMIEGEE 238 (413)
T ss_pred HHHHHHHhCCCC----CCcCCCCCCchHHHHHHHcCCHHHHHHHHHC-------------------CcCcchHhhcCCCc
Confidence 999999999999 677888875 899999999999999888433 5566544 7789
Q ss_pred CChhhhhHhhh
Q 044420 362 KTPRELFSIEH 372 (545)
Q Consensus 362 ~Tpl~~a~~~~ 372 (545)
.||++++....
T Consensus 239 ~t~l~~~~~~~ 249 (413)
T PHA02875 239 CTILDMICNMC 249 (413)
T ss_pred hHHHHHHHhhc
Confidence 99999876543
|
|
| >KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-37 Score=255.04 Aligned_cols=216 Identities=20% Similarity=0.226 Sum_probs=173.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC-CCCcHHHHHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDR-NGNTAFCFAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A 122 (545)
.+.++.+.+|+.....-++.+++. .+..++.++. +|+||||+||..|+.++|++|++. +..+ +.+|..|+||||.|
T Consensus 2 e~~~~~~~~~~~~~~~kveel~~s-~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~-ddkDdaGWtPlhia 79 (226)
T KOG4412|consen 2 EYASLGKAICENCEEFKVEELIQS-DPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKP-DDKDDAGWTPLHIA 79 (226)
T ss_pred CccchHHHHHhhchHHHHHHHHhc-ChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCC-CCccccCCchhhhh
Confidence 356778888888888888888873 3335666665 788888888888888888888853 4443 66788888888888
Q ss_pred HHcCCHHHHHHHHHc-ccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccc
Q 044420 123 AVLAQRDMALYLYDD-AKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 201 (545)
+..|+.++|+.|+.+ |+| +|.
T Consensus 80 ~s~g~~evVk~Ll~r~~ad-----------------------------------vna----------------------- 101 (226)
T KOG4412|consen 80 ASNGNDEVVKELLNRSGAD-----------------------------------VNA----------------------- 101 (226)
T ss_pred hhcCcHHHHHHHhcCCCCC-----------------------------------cce-----------------------
Confidence 888888888888876 544 222
Q ss_pred cchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHH
Q 044420 202 QGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~ 281 (545)
.++.|.|+||+|+..|..+++.+|+++|+. ++.+|..|.||||-|+.
T Consensus 102 --------------------------------~tn~G~T~LHyAagK~r~eIaqlLle~ga~-i~~kD~~~qtplHRAAa 148 (226)
T KOG4412|consen 102 --------------------------------TTNGGQTCLHYAAGKGRLEIAQLLLEKGAL-IRIKDKQGQTPLHRAAA 148 (226)
T ss_pred --------------------------------ecCCCcceehhhhcCChhhHHHHHHhcCCC-CcccccccCchhHHHHh
Confidence 235567777778888899999999999988 99999999999999999
Q ss_pred hCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCC
Q 044420 282 HRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEG 361 (545)
Q Consensus 282 ~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G 361 (545)
-|+.+++++|+..|+. +|.+|+.|+||||.|...++.+...+|. -++++.+..|++|
T Consensus 149 vGklkvie~Li~~~a~----~n~qDk~G~TpL~~al~e~~~d~a~lLV-------------------~~gAd~~~edke~ 205 (226)
T KOG4412|consen 149 VGKLKVIEYLISQGAP----LNTQDKYGFTPLHHALAEGHPDVAVLLV-------------------RAGADTDREDKEG 205 (226)
T ss_pred ccchhhHHHHHhcCCC----CCcccccCccHHHHHHhccCchHHHHHH-------------------HhccceeeccccC
Confidence 9999999999999988 8999999999999998888887765542 2478999999999
Q ss_pred CChhhhhHhhhhhhhh
Q 044420 362 KTPRELFSIEHSSLLR 377 (545)
Q Consensus 362 ~Tpl~~a~~~~~~l~~ 377 (545)
||+..++..-.+..+
T Consensus 206 -t~~~~a~~~l~~alk 220 (226)
T KOG4412|consen 206 -TALRIACNELLEALK 220 (226)
T ss_pred -chHHHHHHHHHHHHH
Confidence 999988765444433
|
|
| >PHA02917 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=315.73 Aligned_cols=312 Identities=12% Similarity=0.055 Sum_probs=232.9
Q ss_pred cccccCCHHhHHHHHcCChH----HHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC
Q 044420 4 NVYLNICVPLQKAALKGNWP----TAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDR 79 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~ 79 (545)
..+.+|.||||.|+..|+.+ +++.|++ ..+ . .+ .. +..+++|.|+..|+.|+|++|++ +|+++|.+|.
T Consensus 63 ~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~-~~~-~-~n-~~--~~~~~~~~a~~~~~~e~vk~Ll~--~Gadin~~d~ 134 (661)
T PHA02917 63 HKNWRQLTPLEEYTNSRHVKVNKDIAMALLE-ATG-Y-SN-IN--DFNIFSYMKSKNVDVDLIKVLVE--HGFDLSVKCE 134 (661)
T ss_pred ccCCCCCCHHHHHHHcCChhHHHHHHHHHHh-ccC-C-CC-CC--CcchHHHHHhhcCCHHHHHHHHH--cCCCCCccCC
Confidence 34567999999999999855 4567776 223 2 22 22 23477888999999999999999 8999999999
Q ss_pred CCCcHHHHHH--HhCCHHHHHHHHHcCcccccCCCC---CC-----------CcHHHHHHH-----------cCCHHHHH
Q 044420 80 NGNTAFCFAV--AAGSIHIAKIMLKKNERLLTMRGG---EN-----------MTPLYMAAV-----------LAQRDMAL 132 (545)
Q Consensus 80 ~g~TpLh~A~--~~g~~~iv~~Ll~~~~~~~~~~~~---~g-----------~tpL~~A~~-----------~g~~~iv~ 132 (545)
+|.||||.|+ ..|+.+++++|+++|+++ +.+|. .| .||||+|+. .++.++++
T Consensus 135 ~g~T~L~~~~a~~~~~~eivklLi~~Ga~v-n~~d~~~~~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~ 213 (661)
T PHA02917 135 NHRSVIENYVMTDDPVPEIIDLFIENGCSV-LYEDEDDEYGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVK 213 (661)
T ss_pred CCccHHHHHHHccCCCHHHHHHHHHcCCCc-cccccccccccccccccccccccHHHHHHhhcccccccccccCcHHHHH
Confidence 9999999654 578999999999999997 54443 33 599999986 46899999
Q ss_pred HHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccc----ccCCCCchHHHHHHhCC---------CCccc
Q 044420 133 YLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV----ARDGNYETALHVLARKP---------SAFAS 199 (545)
Q Consensus 133 ~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~----~~d~~g~tpLh~A~~~~---------~~~~~ 199 (545)
+|+++|++++..+..|.||||+|+..+.....+.++|.+ |++++ ..|..|.+|+|+|+..+ +.+.+
T Consensus 214 ~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv 292 (661)
T PHA02917 214 CLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLV 292 (661)
T ss_pred HHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCcccccccccCcccccchHHHHHHHhhccccccchHHHH
Confidence 999999999999999999999999887642234455554 66654 46777888888888321 11112
Q ss_pred cccch----------------hh---------H--hH---HH----------HHHHHHHHHHHHhcCC------------
Q 044420 200 RNQGL----------------LT---------R--LM---HS----------ALQLVKSLWEAILKRD------------ 227 (545)
Q Consensus 200 ~~~~~----------------~~---------~--~~---~~----------~~~~~~~l~~~l~~~~------------ 227 (545)
+.+.. .. . .. +. ..++++.|++.+.+.+
T Consensus 293 ~~Li~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~v~~Ll~~GAdvn~~~~~g~~~~~~ 372 (661)
T PHA02917 293 KLFLENGKPHGIMCSIVPLWRNDKETISLILKTMNSDVLQHILIEYMTFGDIDIPLVECMLEYGAVVNKEAIHGYFRNIN 372 (661)
T ss_pred HHHHhCCCCCceeEeeecccccchHHHHHHHHHhchHHHHHHHHHHHHcCCCcHHHHHHHHHcCCCCCCCCccccchhhc
Confidence 11111 00 0 00 00 1234555544433211
Q ss_pred -------------chhhhhhccCCChHHHHHHhcC-----------------------cHHHHHHHHHHCCCcccccccC
Q 044420 228 -------------DSEFTDLIRKPSHLLFDAAELG-----------------------NFEFLAELICSYPDLVHELDDN 271 (545)
Q Consensus 228 -------------~~~~~~~~~~g~tpLh~A~~~g-----------------------~~~~v~~Ll~~~~~~~~~~d~~ 271 (545)
..+....+.+|.||||.|++.+ ..++++.|+++|++ ++.+|..
T Consensus 373 ~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~Ll~~GAd-IN~kd~~ 451 (661)
T PHA02917 373 IDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDMSYACPILSTINICLPYLKD-INMIDKR 451 (661)
T ss_pred CCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchhhhhhhhHHHHHHHHHCCCC-CCCCCCC
Confidence 1222334557999999998543 35678999999999 9999999
Q ss_pred CCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhcc-CCCCCccccccc
Q 044420 272 NRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK-SPHPSRVSIVSG 330 (545)
Q Consensus 272 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~-~~~~~~~~~L~~ 330 (545)
|+||||+|+..++.+++++|+++|++ +|.+|..|+||||+|+. .++.+++++|..
T Consensus 452 G~TpLh~Aa~~~~~~~v~~Ll~~GAd----in~~d~~G~T~L~~A~~~~~~~~iv~~LL~ 507 (661)
T PHA02917 452 GETLLHKAVRYNKQSLVSLLLESGSD----VNIRSNNGYTCIAIAINESRNIELLKMLLC 507 (661)
T ss_pred CcCHHHHHHHcCCHHHHHHHHHCcCC----CCCCCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999999999999999999 88999999999999996 677888888753
|
|
| >KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=325.22 Aligned_cols=281 Identities=20% Similarity=0.165 Sum_probs=206.1
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..+.||+|.|++.|..+.++.++. .+ .+.+ ..+..|.||||.|+..++.++|+.+++ .+++.+.++..|.||+|
T Consensus 372 ~k~~~pl~la~~~g~~~~v~Lll~--~g-a~~~-~~gk~gvTplh~aa~~~~~~~v~l~l~--~gA~~~~~~~lG~T~lh 445 (1143)
T KOG4177|consen 372 EKGFTPLHLAVKSGRVSVVELLLE--AG-ADPN-SAGKNGVTPLHVAAHYGNPRVVKLLLK--RGASPNAKAKLGYTPLH 445 (1143)
T ss_pred ccCCcchhhhcccCchhHHHhhhh--cc-CCcc-cCCCCCcceeeehhhccCcceEEEEec--cCCChhhHhhcCCChhh
Confidence 345666666666666666666666 44 3433 556666666666666666666666666 56666666666666666
Q ss_pred HHHHhC-CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 87 FAVAAG-SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 87 ~A~~~g-~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
+|+..| ..++...+++.|.++ +..-..|.||||.|+..|+.+++..|++.++..+.-...+-+++|.++.... ..+
T Consensus 446 vaa~~g~~~~~~~~l~~~g~~~-n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~--v~~ 522 (1143)
T KOG4177|consen 446 VAAKKGRYLQIARLLLQYGADP-NAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDT--VKV 522 (1143)
T ss_pred hhhhcccHhhhhhhHhhcCCCc-chhccccCcchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhh--HHH
Confidence 666666 566666666666664 6666666666666666666666666666665545555556666666665543 345
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
...+.++|++++.++.+|+||||.|+..|+.. ++++|++++ .+.+.+++.|+||||.|
T Consensus 523 ~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~---------------------~VkfLLe~g-Adv~ak~~~G~TPLH~A 580 (1143)
T KOG4177|consen 523 AKILLEHGANVDLRTGRGYTPLHVAVHYGNVD---------------------LVKFLLEHG-ADVNAKDKLGYTPLHQA 580 (1143)
T ss_pred HHHHhhcCCceehhcccccchHHHHHhcCCch---------------------HHHHhhhCC-ccccccCCCCCChhhHH
Confidence 67777889999999999999999999999763 466777777 66777789999999999
Q ss_pred HhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhh-hhhcccCCCCChhhhhccC
Q 044420 246 AELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKEL-MATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 246 ~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~-~~n~~d~~G~TpLh~A~~~ 319 (545)
|..|+.+++++|+++|++ +|..|.+|.||||+|+..|+.+++++|+..+.++.. .....+..|.||...+-..
T Consensus 581 a~~G~~~i~~LLlk~GA~-vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~~v~e~~ 654 (1143)
T KOG4177|consen 581 AQQGHNDIAELLLKHGAS-VNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPEDVAEEL 654 (1143)
T ss_pred HHcChHHHHHHHHHcCCC-CCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChhhHHHHh
Confidence 999999999999999999 999999999999999999999999999999887421 1344567788888776554
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-35 Score=304.46 Aligned_cols=262 Identities=14% Similarity=0.147 Sum_probs=190.7
Q ss_pred ccCCHHhHHHHH--cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHc-----CCHHHHHHHHHcCCCcccccccC
Q 044420 7 LNICVPLQKAAL--KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGA-----RQTGFVEELLKLMKPEDLTLQDR 79 (545)
Q Consensus 7 ~~~~t~L~~Aa~--~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~~d~ 79 (545)
.++.|+++.+.. .++.++|+.|++ +| ++++ ..|..|.||||.|+.+ ++.+++++|++ +|+++|.+|.
T Consensus 34 ~~~~~~~~~yl~~~~~~~~iv~~Ll~--~G-advn-~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~--~GadiN~~d~ 107 (489)
T PHA02798 34 VNEYSIFQKYLQRDSPSTDIVKLFIN--LG-ANVN-GLDNEYSTPLCTILSNIKDYKHMLDIVKILIE--NGADINKKNS 107 (489)
T ss_pred cccchHHHHHHhCCCCCHHHHHHHHH--CC-CCCC-CCCCCCCChHHHHHHhHHhHHhHHHHHHHHHH--CCCCCCCCCC
Confidence 456676664443 346788888888 67 6666 6778888888887764 56788888888 7888888888
Q ss_pred CCCcHHHHHHHhC---CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC---HHHHHHHHHcccCCccCC-CCChhhH
Q 044420 80 NGNTAFCFAVAAG---SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ---RDMALYLYDDAKAKDNLT-PEDQNAL 152 (545)
Q Consensus 80 ~g~TpLh~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~---~~iv~~Ll~~~~~~~~~~-~~~~t~l 152 (545)
.|+||||+|+.++ +.+++++|+++|+++ +.+|.+|.||||+|++.|+ .+++++|+++|++++..+ ..+.||+
T Consensus 108 ~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~L 186 (489)
T PHA02798 108 DGETPLYCLLSNGYINNLEILLFMIENGADT-TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTL 186 (489)
T ss_pred CcCcHHHHHHHcCCcChHHHHHHHHHcCCCc-cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHH
Confidence 8888888888765 678888888888886 7888888888888888877 788888888888876664 3566777
Q ss_pred HHHHHhc--CcHHHHHHHHHhCCCcccccCCCCchHHHHH-------HhCCCCccccccchhhHhHHHHHHHHHHHHHHH
Q 044420 153 FFTCIST--DLHDLALKLLEDHSGLAVARDGNYETALHVL-------ARKPSAFASRNQGLLTRLMHSALQLVKSLWEAI 223 (545)
Q Consensus 153 ~~aa~~~--~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 223 (545)
|.++... .....+.++|.++|++++..+..|.++++.. ...+ ..+ +++.+
T Consensus 187 h~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~-----------------~~~----i~~~l 245 (489)
T PHA02798 187 HCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRF-----------------KKN----ILDFI 245 (489)
T ss_pred HHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccc-----------------hHH----HHHHH
Confidence 7766532 1124556777777888888888888776621 1111 112 22223
Q ss_pred hcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh
Q 044420 224 LKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299 (545)
Q Consensus 224 ~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 299 (545)
.. + .+++.+|..|.||||+|+..|+.+++++|+++|+| ++.+|..|+||||+|+.+++.++++.|++++++++
T Consensus 246 ~~-~-~dvN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd-in~~d~~G~TpL~~A~~~~~~~iv~~lL~~~~~~~ 318 (489)
T PHA02798 246 FS-Y-IDINQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD-INIITELGNTCLFTAFENESKFIFNSILNKKPNKN 318 (489)
T ss_pred Hh-c-CCCCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc-ccccCCCCCcHHHHHHHcCcHHHHHHHHccCCCHH
Confidence 22 2 45667777888888888888888888888888888 78888888888888888888888888888887744
|
|
| >PHA02798 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=304.95 Aligned_cols=277 Identities=13% Similarity=0.137 Sum_probs=227.9
Q ss_pred ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHh-----CC
Q 044420 21 NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAG--ARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAA-----GS 93 (545)
Q Consensus 21 ~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~-----g~ 93 (545)
+.+.|+.|++ .. .... . ..|.|+++.+.. .++.++|++|++ +|+++|.+|..|.||||.|+.+ ++
T Consensus 17 ~~~~v~~ll~--~~-~~~~-~--~~~~~~~~~yl~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~TpL~~~~~n~~~~~~~ 88 (489)
T PHA02798 17 KLSTVKLLIK--SC-NPNE-I--VNEYSIFQKYLQRDSPSTDIVKLFIN--LGANVNGLDNEYSTPLCTILSNIKDYKHM 88 (489)
T ss_pred cHHHHHHHHh--cC-Chhh-h--cccchHHHHHHhCCCCCHHHHHHHHH--CCCCCCCCCCCCCChHHHHHHhHHhHHhH
Confidence 4689999998 33 2222 2 457787775544 458999999999 8999999999999999999864 67
Q ss_pred HHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC---CHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC-cHHHHHHHH
Q 044420 94 IHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA---QRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD-LHDLALKLL 169 (545)
Q Consensus 94 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g---~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~-~~~~~~~lL 169 (545)
.+++++|+++|+++ +.+|.+|.||||+|+.++ +.+++++|+++|++++..+..|.||||+++..+. ....+.++|
T Consensus 89 ~~iv~~Ll~~Gadi-N~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~L 167 (489)
T PHA02798 89 LDIVKILIENGADI-NKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLL 167 (489)
T ss_pred HHHHHHHHHCCCCC-CCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHHH
Confidence 89999999999997 899999999999999986 7899999999999999999999999999999875 224556778
Q ss_pred HhCCCcccccC-CCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH-----
Q 044420 170 EDHSGLAVARD-GNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF----- 243 (545)
Q Consensus 170 ~~~~~~~~~~d-~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh----- 243 (545)
.+.|++++.++ ..|.||||.++..+.... ..++++.++ +.+ .+.+..+..|.++++
T Consensus 168 l~~gadin~~~~~~~~t~Lh~~~~~~~~~~-------------~~~ivk~Li----~~G-a~i~~~~~~~~~~~~~~l~~ 229 (489)
T PHA02798 168 LEKGVDINTHNNKEKYDTLHCYFKYNIDRI-------------DADILKLFV----DNG-FIINKENKSHKKKFMEYLNS 229 (489)
T ss_pred HHhCCCcccccCcCCCcHHHHHHHhccccC-------------CHHHHHHHH----HCC-CCcccCCccccchHHHHHHH
Confidence 88899999885 579999999987542211 234554444 444 444455667788876
Q ss_pred --HHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCC
Q 044420 244 --DAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321 (545)
Q Consensus 244 --~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 321 (545)
.+...++.+++++|+. +++ ++.+|..|+||||+|+.+++.+++++|+++|++ +|.+|..|+||||+|+..++
T Consensus 230 l~~~~~~~~~~i~~~l~~-~~d-vN~~d~~G~TPL~~A~~~~~~~~v~~LL~~GAd----in~~d~~G~TpL~~A~~~~~ 303 (489)
T PHA02798 230 LLYDNKRFKKNILDFIFS-YID-INQVDELGFNPLYYSVSHNNRKIFEYLLQLGGD----INIITELGNTCLFTAFENES 303 (489)
T ss_pred HHhhcccchHHHHHHHHh-cCC-CCCcCcCCccHHHHHHHcCcHHHHHHHHHcCCc----ccccCCCCCcHHHHHHHcCc
Confidence 2455678889988776 688 999999999999999999999999999999999 78899999999999999999
Q ss_pred CCccccccc
Q 044420 322 PSRVSIVSG 330 (545)
Q Consensus 322 ~~~~~~L~~ 330 (545)
.++++.|.+
T Consensus 304 ~~iv~~lL~ 312 (489)
T PHA02798 304 KFIFNSILN 312 (489)
T ss_pred HHHHHHHHc
Confidence 999888754
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=279.01 Aligned_cols=189 Identities=21% Similarity=0.156 Sum_probs=147.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhh-------hccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILC-------AGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD 78 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-------~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d 78 (545)
..+|.|||..||++|+.++|++|++ ..+ +.+. .-.+-+|-+||..|+..||+++|+.|++ +|+++|...
T Consensus 39 ~~~g~tPL~iaaRnGH~~vVeyLle-~~~-a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~--~ga~VN~tT 114 (615)
T KOG0508|consen 39 VQNGGTPLLIAARNGHADVVEYLLE-HCR-ASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLR--RGASVNDTT 114 (615)
T ss_pred ccCCCCceeeehhcCcHHHHHHHHH-Hhc-CCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHH--hcCcccccc
Confidence 3567788888888888888888888 332 2221 1123467888888888888888888888 678888888
Q ss_pred CCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 79 RNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 79 ~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
....|||--||.-|+.++||+|+++|+|+ ++.|..|.|.||.||..||.+|+++|++.|+|++..+..|.|+||.++.+
T Consensus 115 ~TNStPLraACfDG~leivKyLvE~gad~-~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEs 193 (615)
T KOG0508|consen 115 RTNSTPLRAACFDGHLEIVKYLVEHGADP-EIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAES 193 (615)
T ss_pred ccCCccHHHHHhcchhHHHHHHHHcCCCC-cccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhc
Confidence 88888888888888888888888888886 88888888888888888888888888888888888888888888888877
Q ss_pred cCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 159 TDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 159 ~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+.. .+.++|..+|+.+ .+|..|.|||..|+..|..+.+..+
T Consensus 194 G~v--divq~Ll~~ga~i-~~d~~GmtPL~~Aa~tG~~~iVe~L 234 (615)
T KOG0508|consen 194 GSV--DIVQLLLKHGAKI-DVDGHGMTPLLLAAVTGHTDIVERL 234 (615)
T ss_pred ccH--HHHHHHHhCCcee-eecCCCCchHHHHhhhcchHHHHHH
Confidence 654 4556666677655 3466688888888888876655443
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=276.90 Aligned_cols=210 Identities=20% Similarity=0.220 Sum_probs=181.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMAAV 124 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~ 124 (545)
-.+-.+.|++.|.++-|+.|++. .+.+++..|.+|.|+||+|+.+++.+++++|+++|+++ |..+ .-+.||||+|++
T Consensus 44 ~~~~~v~A~q~G~l~~v~~lve~-~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv-n~~gG~l~stPLHWAar 121 (600)
T KOG0509|consen 44 SLDDIVKATQYGELETVKELVES-EGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV-NAIGGVLGSTPLHWAAR 121 (600)
T ss_pred hhhhhhhHhhcchHHHHHHHHhh-cCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc-cccCCCCCCCcchHHHH
Confidence 45678899999999999999993 39999999999999999999999999999999999998 5555 779999999999
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
+|+..+|++|+++|+|+. .+
T Consensus 122 ~G~~~vv~lLlqhGAdpt-----------------------------------~~------------------------- 141 (600)
T KOG0509|consen 122 NGHISVVDLLLQHGADPT-----------------------------------LK------------------------- 141 (600)
T ss_pred cCcHHHHHHHHHcCCCCc-----------------------------------ee-------------------------
Confidence 999999999999998732 22
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
|.+|.+|||+|++.|+.-+|-+|+.++.| ++.+|.+|+||||+|+.+|+
T Consensus 142 ------------------------------D~~G~~~lHla~~~~~~~~vayll~~~~d-~d~~D~~grTpLmwAaykg~ 190 (600)
T KOG0509|consen 142 ------------------------------DKQGLTPLHLAAQFGHTALVAYLLSKGAD-IDLRDNNGRTPLMWAAYKGF 190 (600)
T ss_pred ------------------------------cCCCCcHHHHHHHhCchHHHHHHHHhccc-CCCcCCCCCCHHHHHHHhcc
Confidence 25567777777777788888999999988 89999999999999999998
Q ss_pred hHHHHHHHhhccchhhhhhccc-CCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCC
Q 044420 285 ANIFNLIYEIGFTKELMATFKD-HDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKT 363 (545)
Q Consensus 285 ~~iv~~Ll~~g~~~~~~~n~~d-~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~T 363 (545)
...++.|++-|+. ++.+| ++|+||||.|+..|+..++.++.++ +++.+.+|.+|+|
T Consensus 191 ~~~v~~LL~f~a~----~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g-------------------~~~~d~~~~~g~t 247 (600)
T KOG0509|consen 191 ALFVRRLLKFGAS----LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG-------------------GADLDKTNTNGKT 247 (600)
T ss_pred cHHHHHHHHhccc----ccccccccCCchHHHHHhcCCcceEehhhhc-------------------CCcccccccCCCC
Confidence 8889999999888 56676 8999999999999999998855433 5677888999999
Q ss_pred hhhhhHhh
Q 044420 364 PRELFSIE 371 (545)
Q Consensus 364 pl~~a~~~ 371 (545)
|+++|.++
T Consensus 248 p~~LA~~~ 255 (600)
T KOG0509|consen 248 PFDLAQER 255 (600)
T ss_pred HHHHHHHh
Confidence 99999766
|
|
| >PHA02730 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-34 Score=293.47 Aligned_cols=299 Identities=11% Similarity=0.060 Sum_probs=207.0
Q ss_pred cccccCCHHhHHHHHcC--ChHHHHHhhcCCCCchhhhhccCC-------------------------------------
Q 044420 4 NVYLNICVPLQKAALKG--NWPTAKHLLGNEDPRSILCAGIAK------------------------------------- 44 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g--~~~~v~~Ll~~~~~~~~~~~~~~~------------------------------------- 44 (545)
..+.+|+||||.|+..| +.|+|+.|++...+ ++.+ ..+.
T Consensus 72 ~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~-~~~~-~~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~ 149 (672)
T PHA02730 72 CRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSN-ASNE-LTSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNY 149 (672)
T ss_pred ccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCC-CCcc-cccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhh
Confidence 34567888888888866 68888888872111 1111 1222
Q ss_pred ----CCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-------cccCCCC-cHHHHHH------HhCCHHHHHHHHHcCcc
Q 044420 45 ----GYETLLHLAAGARQTGFVEELLKLMKPEDLT-------LQDRNGN-TAFCFAV------AAGSIHIAKIMLKKNER 106 (545)
Q Consensus 45 ----~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-------~~d~~g~-TpLh~A~------~~g~~~iv~~Ll~~~~~ 106 (545)
.|.+|+++|+..++.|+|++|++ +|++++ ..|..+. |.||+++ .+++.|++++|+++|++
T Consensus 150 ~~~~~~~~~~yl~~~~~~~eIvklLi~--~g~~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~Gad 227 (672)
T PHA02730 150 YIHCLGLVDIYVTTPNPRPEVLLWLLK--SECYSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVS 227 (672)
T ss_pred hccccchhhhhHhcCCCchHHHHHHHH--cCCcccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCC
Confidence 45666666666666667777766 566664 1233333 3344332 34567777777777777
Q ss_pred cccCCCCCCCcHHHH--HHHcCCHHHHHHHHH--------------------------------cccCCcc---------
Q 044420 107 LLTMRGGENMTPLYM--AAVLAQRDMALYLYD--------------------------------DAKAKDN--------- 143 (545)
Q Consensus 107 ~~~~~~~~g~tpL~~--A~~~g~~~iv~~Ll~--------------------------------~~~~~~~--------- 143 (545)
+ +.+|.+|+||||+ |...|+.|+|++|++ +|+|...
T Consensus 228 I-N~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~ 306 (672)
T PHA02730 228 I-HGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEGRH 306 (672)
T ss_pred C-CCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhccC
Confidence 6 7788888888874 445566888888888 5666422
Q ss_pred -----------CCCCChh---------------------hHHHHHHhcC-cHHHHHHHHHhCCCcccccCCCCchHHHHH
Q 044420 144 -----------LTPEDQN---------------------ALFFTCISTD-LHDLALKLLEDHSGLAVARDGNYETALHVL 190 (545)
Q Consensus 144 -----------~~~~~~t---------------------~l~~aa~~~~-~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A 190 (545)
.+..|.+ .|+.-...+. ....+.++|.++|++++.. ..|.||||+|
T Consensus 307 ~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~GAdIN~k-~~G~TpLH~A 385 (672)
T PHA02730 307 TLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNGATMDKT-TDNNYPLHDY 385 (672)
T ss_pred cchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCCCCCCcC-CCCCcHHHHH
Confidence 2333322 2222223231 3456778888899999975 7999999999
Q ss_pred HhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc-hhhhhhccCCChHHHH---HHhcC---------cHHHHHHH
Q 044420 191 ARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD-SEFTDLIRKPSHLLFD---AAELG---------NFEFLAEL 257 (545)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~tpLh~---A~~~g---------~~~~v~~L 257 (545)
+..++... ..+ +++.|++.+. .+++..|..|.||||. |...+ ..+++++|
T Consensus 386 a~~nnn~i-------------~~e----IvelLIs~Ga~~dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~L 448 (672)
T PHA02730 386 FVNNNNIV-------------DVN----VVRFIVENNGHMAINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDIL 448 (672)
T ss_pred HHHcCCcc-------------hHH----HHHHHHHcCCCccccccccCCCchHhHHHHHHhccccccccchhHHHHHHHH
Confidence 88774100 123 4556666654 3567778899999994 33332 23679999
Q ss_pred HHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccC-CCCChhhhhccC--CCCCccccccc
Q 044420 258 ICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDH-DQNNMLHLAAKS--PHPSRVSIVSG 330 (545)
Q Consensus 258 l~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~-~G~TpLh~A~~~--~~~~~~~~L~~ 330 (545)
+++|++ ++.+|..|+||||+|+..++.+++++|+++|++ +|.+|. .|+||||+|+.. ++.++++.|.+
T Consensus 449 Is~GAD-INakD~~G~TPLh~Aa~~~~~eive~LI~~GAd----IN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs 519 (672)
T PHA02730 449 SKYMDD-IDMIDNENKTLLYYAVDVNNIQFARRLLEYGAS----VNTTSRSIINTAIQKSSYRRENKTKLVDLLLS 519 (672)
T ss_pred Hhcccc-hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCC----CCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence 999999 999999999999999999999999999999999 788997 599999999974 67888888854
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=281.32 Aligned_cols=329 Identities=14% Similarity=0.071 Sum_probs=226.9
Q ss_pred cccCCHHhHHHHHcCC----hHHHHHhhcCCCCchhhhhccCCCCCcHHHH-HHHcCCHHHHHHHHHcCCCcccccccCC
Q 044420 6 YLNICVPLQKAALKGN----WPTAKHLLGNEDPRSILCAGIAKGYETLLHL-AAGARQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~----~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~-A~~~g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
..+|.||||.=..+.+ .+++-.|++ .+ +..+-+|.+|+|+ |+.+|++|+|++|++ +|+++|.++..
T Consensus 34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~n~~~~~~~~~~~s~n~~lElvk~LI~--~GAdvN~~~n~ 104 (631)
T PHA02792 34 EYDGETPLKAYVTKKNNNIKNDVVILLLS--SV-----DYKNINDFDIFEYLCSDNIDIELLKLLIS--KGLEINSIKNG 104 (631)
T ss_pred ccCCCccHHHHHhhhhhhHHHHHHHHHHh--CC-----CcCccCCccHHHHHHHhcccHHHHHHHHH--cCCCcccccCC
Confidence 3567788887755544 235555555 33 2556778888876 556788899999998 79999998888
Q ss_pred CCcHHHHHHH-hCCHHHHHHHHHcCcccc-----------------------------------cCCCCCCCcHHHHHHH
Q 044420 81 GNTAFCFAVA-AGSIHIAKIMLKKNERLL-----------------------------------TMRGGENMTPLYMAAV 124 (545)
Q Consensus 81 g~TpLh~A~~-~g~~~iv~~Ll~~~~~~~-----------------------------------~~~~~~g~tpL~~A~~ 124 (545)
|.||+|+|+. .++.|++++|+++|++.. +..|+.|.||||+|+.
T Consensus 105 ~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~ 184 (631)
T PHA02792 105 INIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYII 184 (631)
T ss_pred CCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHh
Confidence 8899999865 689999999999987621 2456778899999998
Q ss_pred cC-------CHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccc-------------cCCC--
Q 044420 125 LA-------QRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVA-------------RDGN-- 182 (545)
Q Consensus 125 ~g-------~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~-------------~d~~-- 182 (545)
++ +.|+++.|+++|++++..+..|.||||+++........+.++|......... +..+
T Consensus 185 ~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~ 264 (631)
T PHA02792 185 TRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHK 264 (631)
T ss_pred hCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccC
Confidence 88 7899999999999888888889999999988874334455555543221100 0000
Q ss_pred -CchHHHHHHhCCCCccccccch--hhHhH-----HHHHHHHH--------------HHHHHHhcCCchhhhhhccCCCh
Q 044420 183 -YETALHVLARKPSAFASRNQGL--LTRLM-----HSALQLVK--------------SLWEAILKRDDSEFTDLIRKPSH 240 (545)
Q Consensus 183 -g~tpLh~A~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~--------------~l~~~l~~~~~~~~~~~~~~g~t 240 (545)
..-.+......+.....-.... ..... ...-++++ .+++.+++.+... . ...+..
T Consensus 265 id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~-~--r~~~~n 341 (631)
T PHA02792 265 IDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATL-Y--RFKHIN 341 (631)
T ss_pred ccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCcc-c--cCCcch
Confidence 0001111111111110000000 00000 00001222 2344455555221 1 123567
Q ss_pred HHHHHHhcCcHHHHHHHHHHCCCcccccccCC--CcHHHHHHHhCchH---HHHHHHhhccchhhhhhcccCCCCChhhh
Q 044420 241 LLFDAAELGNFEFLAELICSYPDLVHELDDNN--RSIFHIAVLHRHAN---IFNLIYEIGFTKELMATFKDHDQNNMLHL 315 (545)
Q Consensus 241 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G--~t~Lh~A~~~~~~~---iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~ 315 (545)
+++.|+..|+.+++++|+++|++ ++.+|.+| .||||+|+.....+ ++++|+++|++ +|.+|..|+||||+
T Consensus 342 ~~~~Aa~~gn~eIVelLIs~GAD-IN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD----IN~kD~~G~TPLh~ 416 (631)
T PHA02792 342 KYFQKFDNRDPKVVEYILKNGNV-VVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD----INKIDKHGRSILYY 416 (631)
T ss_pred HHHHHHHcCCHHHHHHHHHcCCc-hhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc----cccccccCcchHHH
Confidence 89999999999999999999999 89888875 69999988776554 58889999999 88999999999999
Q ss_pred hccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHh
Q 044420 316 AAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSI 370 (545)
Q Consensus 316 A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~ 370 (545)
|+..++.+++++|. .+|++++.+|..|+||+++|..
T Consensus 417 Aa~~~n~eivelLL-------------------s~GADIN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 417 CIESHSVSLVEWLI-------------------DNGADINITTKYGSTCIGICVI 452 (631)
T ss_pred HHHcCCHHHHHHHH-------------------HCCCCCCCcCCCCCCHHHHHHH
Confidence 99999998888773 2488999999999999999975
|
|
| >KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=273.44 Aligned_cols=209 Identities=22% Similarity=0.254 Sum_probs=169.3
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcHHHHH
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTAFCFA 88 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A 88 (545)
..-++.|++.|+++.|+.+++ ..+ .+++ ..|.+|-|+||+||.+++++++++|++ +|+++|..+ .-|.||||+|
T Consensus 45 ~~~~v~A~q~G~l~~v~~lve-~~g-~~v~-~~D~~g~tlLHWAAiNNrl~v~r~li~--~gadvn~~gG~l~stPLHWA 119 (600)
T KOG0509|consen 45 LDDIVKATQYGELETVKELVE-SEG-ESVN-NPDREGVTLLHWAAINNRLDVARYLIS--HGADVNAIGGVLGSTPLHWA 119 (600)
T ss_pred hhhhhhHhhcchHHHHHHHHh-hcC-cCCC-CCCcCCccceeHHHHcCcHHHHHHHHH--cCCCccccCCCCCCCcchHH
Confidence 456789999999999999999 336 6666 688899999999999999999999999 899999998 6799999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHH
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~l 168 (545)
+++|+..+|++|+++|+++ +.+|.+|.||||+|++.|+.-.|-+|+.+++|
T Consensus 120 ar~G~~~vv~lLlqhGAdp-t~~D~~G~~~lHla~~~~~~~~vayll~~~~d---------------------------- 170 (600)
T KOG0509|consen 120 ARNGHISVVDLLLQHGADP-TLKDKQGLTPLHLAAQFGHTALVAYLLSKGAD---------------------------- 170 (600)
T ss_pred HHcCcHHHHHHHHHcCCCC-ceecCCCCcHHHHHHHhCchHHHHHHHHhccc----------------------------
Confidence 9999999999999999996 99999999999999999999999999998875
Q ss_pred HHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhc
Q 044420 169 LEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAEL 248 (545)
Q Consensus 169 L~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~ 248 (545)
++.+|.+ |.||||+|+.+
T Consensus 171 -------~d~~D~~-------------------------------------------------------grTpLmwAayk 188 (600)
T KOG0509|consen 171 -------IDLRDNN-------------------------------------------------------GRTPLMWAAYK 188 (600)
T ss_pred -------CCCcCCC-------------------------------------------------------CCCHHHHHHHh
Confidence 2344444 44444555555
Q ss_pred CcHHHHHHHHHHCCCcccccc-cCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 249 GNFEFLAELICSYPDLVHELD-DNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 249 g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
|....++.|++.++. +..+| .+|+||||+|+..|+.+++++|++.|.+ .+.+|.+|.||+.+|.+.
T Consensus 189 g~~~~v~~LL~f~a~-~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g~~~----~d~~~~~g~tp~~LA~~~ 255 (600)
T KOG0509|consen 189 GFALFVRRLLKFGAS-LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEGGAD----LDKTNTNGKTPFDLAQER 255 (600)
T ss_pred cccHHHHHHHHhccc-ccccccccCCchHHHHHhcCCcceEehhhhcCCc----ccccccCCCCHHHHHHHh
Confidence 555556777777777 55555 7777777777777777777755555555 556777777777777655
|
|
| >KOG0508 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=254.64 Aligned_cols=157 Identities=19% Similarity=0.244 Sum_probs=143.0
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
.+..+|-+||..|+..|++++||.|++ .+ +.+| ..+....|||--||.-|+.++|++|++ +|+|++..|..|.|
T Consensus 79 ge~IegappLWaAsaAGHl~vVk~L~~--~g-a~VN-~tT~TNStPLraACfDG~leivKyLvE--~gad~~IanrhGhT 152 (615)
T KOG0508|consen 79 GETIEGAPPLWAASAAGHLEVVKLLLR--RG-ASVN-DTTRTNSTPLRAACFDGHLEIVKYLVE--HGADPEIANRHGHT 152 (615)
T ss_pred CcccCCCchhhHHhccCcHHHHHHHHH--hc-Cccc-cccccCCccHHHHHhcchhHHHHHHHH--cCCCCcccccCCCe
Confidence 356789999999999999999999999 77 7777 567778899999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
.||+||..||.+|+++|++.|+|+ |.++..|.|+||.|++.|+.|++++|+++|+. ...+..|.|||..|+..+.. +
T Consensus 153 cLmIa~ykGh~~I~qyLle~gADv-n~ks~kGNTALH~caEsG~vdivq~Ll~~ga~-i~~d~~GmtPL~~Aa~tG~~-~ 229 (615)
T KOG0508|consen 153 CLMIACYKGHVDIAQYLLEQGADV-NAKSYKGNTALHDCAESGSVDIVQLLLKHGAK-IDVDGHGMTPLLLAAVTGHT-D 229 (615)
T ss_pred eEEeeeccCchHHHHHHHHhCCCc-chhcccCchHHHhhhhcccHHHHHHHHhCCce-eeecCCCCchHHHHhhhcch-H
Confidence 999999999999999999999997 99999999999999999999999999999997 67788899999999887654 5
Q ss_pred HHHHHH
Q 044420 164 LALKLL 169 (545)
Q Consensus 164 ~~~~lL 169 (545)
++..++
T Consensus 230 iVe~L~ 235 (615)
T KOG0508|consen 230 IVERLL 235 (615)
T ss_pred HHHHHh
Confidence 555554
|
|
| >PHA02792 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=268.01 Aligned_cols=278 Identities=13% Similarity=0.115 Sum_probs=215.3
Q ss_pred ccccCCHHhHH-HHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHH-cCCHHHHHHHHHcCCCccc--------
Q 044420 5 VYLNICVPLQK-AALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAG-ARQTGFVEELLKLMKPEDL-------- 74 (545)
Q Consensus 5 ~~~~~~t~L~~-Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~-~g~~~~v~~Ll~~~~~~~~-------- 74 (545)
.+.+|.+|+|+ |...|++|+|+.|++ +| ++++ .++..|.||||+|+. .++.|++++|++ +|+++
T Consensus 67 ~n~~~~~~~~~~~s~n~~lElvk~LI~--~G-AdvN-~~~n~~~~~l~ya~~~~~~~eivk~Ll~--~Gad~~~~~~~g~ 140 (631)
T PHA02792 67 KNINDFDIFEYLCSDNIDIELLKLLIS--KG-LEIN-SIKNGINIVEKYATTSNPNVDVFKLLLD--KGIPTCSNIQYGY 140 (631)
T ss_pred CccCCccHHHHHHHhcccHHHHHHHHH--cC-CCcc-cccCCCCcceeEeecCCCChHHHHHHHH--CCCCcccccccCc
Confidence 45678889977 666899999999999 78 8887 667789999999966 699999999999 67653
Q ss_pred ----------------------------ccccCCCCcHHHHHHHhC-------CHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 75 ----------------------------TLQDRNGNTAFCFAVAAG-------SIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 75 ----------------------------~~~d~~g~TpLh~A~~~g-------~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
|.+|..|.||||+|+.++ +.|+++.|+++|+++ +..|..|.|||
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~-~~~d~~g~t~l 219 (631)
T PHA02792 141 KIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEM-RYYTYREHTTL 219 (631)
T ss_pred chhhhhcccccccchhhhccccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCc-CccCCCCChHH
Confidence 345667999999999999 899999999999998 88999999999
Q ss_pred HHHHHcC--CHHHHHHHHHcccCC-------------------ccCCC-------CChhh--------------------
Q 044420 120 YMAAVLA--QRDMALYLYDDAKAK-------------------DNLTP-------EDQNA-------------------- 151 (545)
Q Consensus 120 ~~A~~~g--~~~iv~~Ll~~~~~~-------------------~~~~~-------~~~t~-------------------- 151 (545)
|+|+.+. +.|++++|++..-+- ...|. .|.+|
T Consensus 220 ~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~ 299 (631)
T PHA02792 220 YYYVDKCDIKREIFDALFDSNYSGNELMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSIL 299 (631)
T ss_pred HHHHHcccchHHHHHHHHhccccccchHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHH
Confidence 9999999 899999998742210 00110 01110
Q ss_pred ----------HHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHH
Q 044420 152 ----------LFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWE 221 (545)
Q Consensus 152 ----------l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 221 (545)
||.-...+...-.+.+++.+.|++.. ......+++.|+..|+. + +++
T Consensus 300 ~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~~~--r~~~~n~~~~Aa~~gn~-----------------e----IVe 356 (631)
T PHA02792 300 KRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGATLY--RFKHINKYFQKFDNRDP-----------------K----VVE 356 (631)
T ss_pred HHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCccc--cCCcchHHHHHHHcCCH-----------------H----HHH
Confidence 01111111112234566667777654 22356678888888855 2 456
Q ss_pred HHhcCCchhhhhhccC--CChHHHHHHhcCcH---HHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhcc
Q 044420 222 AILKRDDSEFTDLIRK--PSHLLFDAAELGNF---EFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGF 296 (545)
Q Consensus 222 ~l~~~~~~~~~~~~~~--g~tpLh~A~~~g~~---~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~ 296 (545)
.|++.+ .+++..|.+ +.||||.|+..+.. +++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|+
T Consensus 357 lLIs~G-ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD-IN~kD~~G~TPLh~Aa~~~n~eivelLLs~GA 434 (631)
T PHA02792 357 YILKNG-NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD-INKIDKHGRSILYYCIESHSVSLVEWLIDNGA 434 (631)
T ss_pred HHHHcC-CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc-cccccccCcchHHHHHHcCCHHHHHHHHHCCC
Confidence 666666 556666665 46999998877654 468899999999 99999999999999999999999999999999
Q ss_pred chhhhhhcccCCCCChhhhhcc
Q 044420 297 TKELMATFKDHDQNNMLHLAAK 318 (545)
Q Consensus 297 ~~~~~~n~~d~~G~TpLh~A~~ 318 (545)
+ +|.+|..|+||||+|+.
T Consensus 435 D----IN~kD~~G~TpL~~A~~ 452 (631)
T PHA02792 435 D----INITTKYGSTCIGICVI 452 (631)
T ss_pred C----CCCcCCCCCCHHHHHHH
Confidence 9 88899999999999976
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=229.59 Aligned_cols=180 Identities=14% Similarity=0.164 Sum_probs=146.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC--CHHHHHHHHHcCcccccCCC-CCCCcH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG--SIHIAKIMLKKNERLLTMRG-GENMTP 118 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g--~~~iv~~Ll~~~~~~~~~~~-~~g~tp 118 (545)
....+.||||.|++.|+.+.|+.|++ . ++.+|..|.||||+|+..+ +.+++++|+++|+++ +.++ ..|.||
T Consensus 17 ~~~~~~~pL~~A~~~~~~~~vk~Li~--~---~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadv-n~~~~~~g~Tp 90 (209)
T PHA02859 17 LFYRYCNPLFYYVEKDDIEGVKKWIK--F---VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADV-NFKTRDNNLSA 90 (209)
T ss_pred HhhccCcHHHHHHHhCcHHHHHHHHH--h---hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCC-CccCCCCCCCH
Confidence 35678999999999999999999997 3 5678889999999999754 899999999999997 6665 589999
Q ss_pred HHHHHHc---CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCC
Q 044420 119 LYMAAVL---AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPS 195 (545)
Q Consensus 119 L~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~ 195 (545)
||+|+.. ++.+++++|+++|++ ++.+|.+|.||||.|+..
T Consensus 91 Lh~a~~~~~~~~~eiv~~Ll~~gad-----------------------------------in~~d~~G~TpLh~a~~~-- 133 (209)
T PHA02859 91 LHHYLSFNKNVEPEILKILIDSGSS-----------------------------------ITEEDEDGKNLLHMYMCN-- 133 (209)
T ss_pred HHHHHHhCccccHHHHHHHHHCCCC-----------------------------------CCCcCCCCCCHHHHHHHh--
Confidence 9998764 468888888888775 344444454454444321
Q ss_pred CccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcH
Q 044420 196 AFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSI 275 (545)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~ 275 (545)
..++.+++++|+++|++ ++.+|.+|+||
T Consensus 134 ---------------------------------------------------~~~~~~iv~~Li~~gad-in~~d~~g~t~ 161 (209)
T PHA02859 134 ---------------------------------------------------FNVRINVIKLLIDSGVS-FLNKDFDNNNI 161 (209)
T ss_pred ---------------------------------------------------ccCCHHHHHHHHHcCCC-cccccCCCCcH
Confidence 13578999999999999 89999999999
Q ss_pred HHH-HHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 276 FHI-AVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 276 Lh~-A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
||. |+..++.+++++|+++|++ ++.+|..|+||||+|...+
T Consensus 162 Lh~~a~~~~~~~iv~~Ll~~Gad----i~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 162 LYSYILFHSDKKIFDFLTSLGID----INETNKSGYNCYDLIKFRN 203 (209)
T ss_pred HHHHHHhcCCHHHHHHHHHcCCC----CCCCCCCCCCHHHHHhhhh
Confidence 996 5667899999999999998 7889999999999998764
|
|
| >PHA02859 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=225.39 Aligned_cols=176 Identities=14% Similarity=0.101 Sum_probs=156.9
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcC--CHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGAR--QTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
.+.||||.|++.|+.+.|+.|++ .. +..|..|.||||+|+..+ +.+++++|++ .|++++.++ ..|.||
T Consensus 20 ~~~~pL~~A~~~~~~~~vk~Li~--~~-----n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~--~gadvn~~~~~~g~Tp 90 (209)
T PHA02859 20 RYCNPLFYYVEKDDIEGVKKWIK--FV-----NDCNDLYETPIFSCLEKDKVNVEILKFLIE--NGADVNFKTRDNNLSA 90 (209)
T ss_pred ccCcHHHHHHHhCcHHHHHHHHH--hh-----hccCccCCCHHHHHHHcCCCCHHHHHHHHH--CCCCCCccCCCCCCCH
Confidence 47899999999999999999998 33 256889999999999865 8999999999 899999997 489999
Q ss_pred HHHHHHh---CCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH--cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhc
Q 044420 85 FCFAVAA---GSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV--LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIST 159 (545)
Q Consensus 85 Lh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~ 159 (545)
||+|+.. ++.+++++|+++|+++ +.+|..|.||||+|+. .++.+++++|+++|++++..+..|.||+|.++...
T Consensus 91 Lh~a~~~~~~~~~eiv~~Ll~~gadi-n~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~ 169 (209)
T PHA02859 91 LHHYLSFNKNVEPEILKILIDSGSSI-TEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFH 169 (209)
T ss_pred HHHHHHhCccccHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhc
Confidence 9998864 4799999999999998 8999999999999986 46899999999999999999999999999876666
Q ss_pred CcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCC
Q 044420 160 DLHDLALKLLEDHSGLAVARDGNYETALHVLARKP 194 (545)
Q Consensus 160 ~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~ 194 (545)
+. ..+.++|.+.|++++.+|..|+||||+|...+
T Consensus 170 ~~-~~iv~~Ll~~Gadi~~~d~~g~tpl~la~~~~ 203 (209)
T PHA02859 170 SD-KKIFDFLTSLGIDINETNKSGYNCYDLIKFRN 203 (209)
T ss_pred CC-HHHHHHHHHcCCCCCCCCCCCCCHHHHHhhhh
Confidence 65 45557888899999999999999999998776
|
|
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.7e-28 Score=240.16 Aligned_cols=184 Identities=13% Similarity=0.096 Sum_probs=147.1
Q ss_pred HHHHcCCHHHHHHHHHcCCCcccc------cccCCCCcHHHHHHH--hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 52 LAAGARQTGFVEELLKLMKPEDLT------LQDRNGNTAFCFAVA--AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 52 ~A~~~g~~~~v~~Ll~~~~~~~~~------~~d~~g~TpLh~A~~--~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+|+..+..|++++|+. +|++++ .++..++|+||+++. .|+.++|++|+++|+++ +. .++.||||.|+
T Consensus 83 ~~~~~~~k~~~~~l~s--~~~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADI-n~--~~~~t~lh~A~ 157 (437)
T PHA02795 83 LFAYITYKDIISALVS--KNYMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVI-YK--IECLNAYFRGI 157 (437)
T ss_pred HHhhcchHHHHHHHHh--cccccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHHCCCCC-CC--CCCCCHHHHHH
Confidence 7888888888888888 677777 677778888888887 77888888888888886 44 34578888888
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..|+.+++++|+++|++.. ..+.+|++.
T Consensus 158 ~~~~~eIVk~Lls~Ga~~~--------------------------------------n~~~~~l~~-------------- 185 (437)
T PHA02795 158 CKKESSVVEFILNCGIPDE--------------------------------------NDVKLDLYK-------------- 185 (437)
T ss_pred HcCcHHHHHHHHhcCCccc--------------------------------------ccccchhhh--------------
Confidence 8888888888888876311 011122221
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~ 283 (545)
..|.+|+|.|+..++.+++++|+++|++ ++.+|..|+||||+|+.+|
T Consensus 186 --------------------------------~~~~t~l~~a~~~~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa~~g 232 (437)
T PHA02795 186 --------------------------------IIQYTRGFLVDEPTVLEIYKLCIPYIED-INQLDAGGRTLLYRAIYAG 232 (437)
T ss_pred --------------------------------hhccchhHHHHhcCHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHHHcC
Confidence 2346899999999999999999999999 8999999999999999999
Q ss_pred chHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCC--------CCcccccc
Q 044420 284 HANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH--------PSRVSIVS 329 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~--------~~~~~~L~ 329 (545)
+.+++++|+++|++ +|.+|..|+||||+|+..|+ .+++++|.
T Consensus 233 ~~eiVelLL~~GAd----IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL 282 (437)
T PHA02795 233 YIDLVSWLLENGAN----VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILL 282 (437)
T ss_pred CHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHH
Confidence 99999999999998 78899999999999999885 36776664
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-25 Score=242.34 Aligned_cols=256 Identities=14% Similarity=0.016 Sum_probs=186.7
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCC-CchhhhhccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNED-PRSILCAGIAKGYETLLH-LAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~-~~~~~~~~~~~~g~T~Lh-~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
-.+++.+++.||+.|+.+.++.+++ .. + .+++ ..|..|+|||| .|+.+++.+++++|++ .++ .+..|+|
T Consensus 14 ~~~~~~~~l~A~~~g~~~~v~~lL~-~~~~-~~in-~~d~~G~t~Lh~~A~~~~~~eiv~lLl~--~g~----~~~~G~T 84 (743)
T TIGR00870 14 LSDEEKAFLPAAERGDLASVYRDLE-EPKK-LNIN-CPDRLGRSALFVAAIENENLELTELLLN--LSC----RGAVGDT 84 (743)
T ss_pred CCHHHHHHHHHHHcCCHHHHHHHhc-cccc-cCCC-CcCccchhHHHHHHHhcChHHHHHHHHh--CCC----CCCcChH
Confidence 3567899999999999999999999 21 3 4444 67899999999 9999999999999999 565 6788999
Q ss_pred HHHHHHHhC---CHHHHHHHHHcCcc------c---ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCC------
Q 044420 84 AFCFAVAAG---SIHIAKIMLKKNER------L---LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLT------ 145 (545)
Q Consensus 84 pLh~A~~~g---~~~iv~~Ll~~~~~------~---~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~------ 145 (545)
|||.|+.++ ..++++.+...+.+ . ....+..|.||||+|+.+|+.+++++|+++|++++...
T Consensus 85 ~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~ 164 (743)
T TIGR00870 85 LLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFV 164 (743)
T ss_pred HHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhh
Confidence 999998732 23344444444432 0 01234579999999999999999999999999976432
Q ss_pred --------CCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHH
Q 044420 146 --------PEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVK 217 (545)
Q Consensus 146 --------~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (545)
..|.+|+|.|+..+. ..+.++|.++|++++.+|..|+||||+|+..+.... .......++.+
T Consensus 165 ~~~~~~~~~~g~tpL~~Aa~~~~--~~iv~lLl~~gadin~~d~~g~T~Lh~A~~~~~~~~--------~~~~l~~~~~~ 234 (743)
T TIGR00870 165 KSQGVDSFYHGESPLNAAACLGS--PSIVALLSEDPADILTADSLGNTLLHLLVMENEFKA--------EYEELSCQMYN 234 (743)
T ss_pred cCCCCCcccccccHHHHHHHhCC--HHHHHHHhcCCcchhhHhhhhhHHHHHHHhhhhhhH--------HHHHHHHHHHH
Confidence 257899999998765 467788889999999999999999999998863210 00001122333
Q ss_pred HHHHHHhcCCc--hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHH
Q 044420 218 SLWEAILKRDD--SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 218 ~l~~~l~~~~~--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~ 281 (545)
.+++.+.+... ......|.+|.||||+|+..|+.++++.|++.+.+ ......+++.|.+.+..
T Consensus 235 ~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~~~-~kk~~a~~~~~~~~~~~ 299 (743)
T TIGR00870 235 FALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYK-QKKFVAWPNGQQLLSLY 299 (743)
T ss_pred HHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHHHh-cceeeccCcchHhHhhh
Confidence 33333333221 11244578899999999999999999999986655 33445566667766654
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >PHA02795 ankyrin-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-26 Score=226.09 Aligned_cols=185 Identities=10% Similarity=0.025 Sum_probs=157.3
Q ss_pred HHHHcCChHHHHHhhcCCCCchhhh-----hccCCCCCcHHHHHHH--cCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 15 KAALKGNWPTAKHLLGNEDPRSILC-----AGIAKGYETLLHLAAG--ARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~T~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.|+..+..|+++.|++ ++ ..++ -..+..++|+||+|+. .|+.++|++|++ +|++++.+ ++.||||.
T Consensus 83 ~~~~~~~k~~~~~l~s--~~-~~~~~~~~~~~~~~~~~~~L~~~~~n~~n~~eiV~~LI~--~GADIn~~--~~~t~lh~ 155 (437)
T PHA02795 83 LFAYITYKDIISALVS--KN-YMEDIFSIIIKNCNSVQDLLLYYLSNAYVEIDIVDFMVD--HGAVIYKI--ECLNAYFR 155 (437)
T ss_pred HHhhcchHHHHHHHHh--cc-cccchhhhhhhccccccHHHHHHHHhcCCCHHHHHHHHH--CCCCCCCC--CCCCHHHH
Confidence 8999999999999999 66 5543 1367789999999999 999999999999 89999984 45899999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCC-----CCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMR-----GGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~-----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~ 162 (545)
|+..|+.+++++|+++|++..+.. +..|.||+|.|+..++.+++++|+++|++++
T Consensus 156 A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GADIN-------------------- 215 (437)
T PHA02795 156 GICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIEDIN-------------------- 215 (437)
T ss_pred HHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCCcC--------------------
Confidence 999999999999999998543333 2347899999999999999999999988622
Q ss_pred HHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 163 DLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
. +|..|.|||
T Consensus 216 ---------------~-------------------------------------------------------kD~~G~TpL 225 (437)
T PHA02795 216 ---------------Q-------------------------------------------------------LDAGGRTLL 225 (437)
T ss_pred ---------------c-------------------------------------------------------CCCCCCCHH
Confidence 2 225567888
Q ss_pred HHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc--------hHHHHHHHhhccc
Q 044420 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH--------ANIFNLIYEIGFT 297 (545)
Q Consensus 243 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~--------~~iv~~Ll~~g~~ 297 (545)
|+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+ .+++++|+++|++
T Consensus 226 h~Aa~~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gad 287 (437)
T PHA02795 226 YRAIYAGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLS 287 (437)
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCC
Confidence 888888889999999999999 89999999999999999884 6899999999987
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-27 Score=233.80 Aligned_cols=252 Identities=22% Similarity=0.194 Sum_probs=200.3
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCC---------chhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDP---------RSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~---------~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
.+-|..|++.|+.+.+..+++...+ +.+..+..|.+|.|+||.||.+|+.+++++|++ ..+.++..|..
T Consensus 4 ~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle--~ea~ldl~d~k 81 (854)
T KOG0507|consen 4 KQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLD--YEALLDLCDTK 81 (854)
T ss_pred hhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhc--chhhhhhhhcc
Confidence 4568899999999999999982111 133345778899999999999999999999999 78899999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|.+|||+|+.+|+.++++.|+.++.. .|..+..|.||||.|+.+||.+++.+|+++|+|+...++.++|++-.|+..+.
T Consensus 82 g~~plhlaaw~g~~e~vkmll~q~d~-~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr 160 (854)
T KOG0507|consen 82 GILPLHLAAWNGNLEIVKMLLLQTDI-LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGR 160 (854)
T ss_pred CcceEEehhhcCcchHHHHHHhcccC-CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhh
Confidence 99999999999999999999999955 59999999999999999999999999999999855555555555555544433
Q ss_pred cHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCCh
Q 044420 161 LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSH 240 (545)
Q Consensus 161 ~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~t 240 (545)
. +++..++.. ... +..+...+ ...++-.+.+
T Consensus 161 ~-~Vvq~ll~~-~~~--------------------------------------------~~~~~~~~---~~~~~~~~~~ 191 (854)
T KOG0507|consen 161 A-EVVQMLLQK-KFP--------------------------------------------VQSSLRVG---DIKRPFPAIY 191 (854)
T ss_pred h-HHHHHHhhh-ccc--------------------------------------------hhhcccCC---CCCCCCCCcC
Confidence 2 222222221 000 00000011 1223356789
Q ss_pred HHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 241 LLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 241 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
|||.|+++|+.++++.|++.|.+ +|....+| |+||.|+.+|..++|.+|++.|.+ ...+|.+|+|+|.+-...
T Consensus 192 plHlaakngh~~~~~~ll~ag~d-in~~t~~g-talheaalcgk~evvr~ll~~gin----~h~~n~~~qtaldil~d~ 264 (854)
T KOG0507|consen 192 PLHLAAKNGHVECMQALLEAGFD-INYTTEDG-TALHEAALCGKAEVVRFLLEIGIN----THIKNQHGQTALDIIIDL 264 (854)
T ss_pred CcchhhhcchHHHHHHHHhcCCC-cccccccc-hhhhhHhhcCcchhhhHHHhhccc----cccccccchHHHHHHHhc
Confidence 99999999999999999999999 88877776 999999999999999999999998 677999999999877653
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-25 Score=246.25 Aligned_cols=178 Identities=20% Similarity=0.230 Sum_probs=156.0
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.+.++.++||.||..|+.++++.|++ .|+++|..|.+|+||||+|+..|+.++++.|+++|+++ +.+|.+|.||||+
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~--~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadi-n~~d~~G~TpL~~ 597 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLK--AKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNV-HIRDANGNTALWN 597 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCC-CCcCCCCCCHHHH
Confidence 34567889999999999999999998 79999999999999999999999999999999999997 8899999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccc
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 201 (545)
|+..|+.+++++|++.++..
T Consensus 598 A~~~g~~~iv~~L~~~~~~~------------------------------------------------------------ 617 (823)
T PLN03192 598 AISAKHHKIFRILYHFASIS------------------------------------------------------------ 617 (823)
T ss_pred HHHhCCHHHHHHHHhcCccc------------------------------------------------------------
Confidence 99999999999998765420
Q ss_pred cchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHH
Q 044420 202 QGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~ 281 (545)
....|.+|||.|+..|+.++++.|+++|++ ++.+|.+|+||||+|+.
T Consensus 618 --------------------------------~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~ 664 (823)
T PLN03192 618 --------------------------------DPHAAGDLLCTAAKRNDLTAMKELLKQGLN-VDSEDHQGATALQVAMA 664 (823)
T ss_pred --------------------------------CcccCchHHHHHHHhCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence 002356899999999999999999999999 89999999999999999
Q ss_pred hCchHHHHHHHhhccchhhhhhcccCCC-CChhhhhccC
Q 044420 282 HRHANIFNLIYEIGFTKELMATFKDHDQ-NNMLHLAAKS 319 (545)
Q Consensus 282 ~~~~~iv~~Ll~~g~~~~~~~n~~d~~G-~TpLh~A~~~ 319 (545)
.|+.+++++|+++|++ ++.+|.+| .||++++...
T Consensus 665 ~g~~~iv~~Ll~~GAd----v~~~~~~g~~t~~~l~~~~ 699 (823)
T PLN03192 665 EDHVDMVRLLIMNGAD----VDKANTDDDFSPTELRELL 699 (823)
T ss_pred CCcHHHHHHHHHcCCC----CCCCCCCCCCCHHHHHHHH
Confidence 9999999999999998 77888888 8999888653
|
|
| >TIGR00870 trp transient-receptor-potential calcium channel protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=231.96 Aligned_cols=237 Identities=19% Similarity=0.145 Sum_probs=166.1
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH-HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC-FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh-~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
..++.+++.|++.|+.+.++.+++...+.++|..|..|+|||| .|+.+++.++++.|+++|+ .+..|.||||.|
T Consensus 15 ~~~~~~~l~A~~~g~~~~v~~lL~~~~~~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A 89 (743)
T TIGR00870 15 SDEEKAFLPAAERGDLASVYRDLEEPKKLNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAI 89 (743)
T ss_pred CHHHHHHHHHHHcCCHHHHHHHhccccccCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHH
Confidence 4578999999999999999999993238899999999999999 8889999999999999987 577899999999
Q ss_pred HHcCCHHHHHHH----HHcccCCc----------cCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHH
Q 044420 123 AVLAQRDMALYL----YDDAKAKD----------NLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALH 188 (545)
Q Consensus 123 ~~~g~~~iv~~L----l~~~~~~~----------~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh 188 (545)
+. ++.+.++.+ ...+.+.. .....|.||||+||..++. .+.++|.++|++++.++....
T Consensus 90 ~~-~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~--eiVklLL~~GAdv~~~~~~~~---- 162 (743)
T TIGR00870 90 SL-EYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNY--EIVKLLLERGASVPARACGDF---- 162 (743)
T ss_pred Hh-ccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCH--HHHHHHHhCCCCCCcCcCCch----
Confidence 87 333434433 33332100 0012344444444444331 233333334444432211110
Q ss_pred HHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccccc
Q 044420 189 VLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHEL 268 (545)
Q Consensus 189 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~ 268 (545)
+..+ ........|.||||.|+..|+.+++++|+++|+| ++.+
T Consensus 163 --~~~~-----------------------------------~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad-in~~ 204 (743)
T TIGR00870 163 --FVKS-----------------------------------QGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD-ILTA 204 (743)
T ss_pred --hhcC-----------------------------------CCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc-hhhH
Confidence 0000 0001124689999999999999999999999998 8999
Q ss_pred ccCCCcHHHHHHHhC---------chHHHHHHHhhccch---hhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 269 DDNNRSIFHIAVLHR---------HANIFNLIYEIGFTK---ELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 269 d~~G~t~Lh~A~~~~---------~~~iv~~Ll~~g~~~---~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
|..|+||||+|+..+ ..++.+++++.+... ..+.+..|.+|.||||+|+..|+.+++++|.+
T Consensus 205 d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~ 278 (743)
T TIGR00870 205 DSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLA 278 (743)
T ss_pred hhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence 999999999999986 234556666655442 22236789999999999999999999998864
|
after chronic exposure to capsaicin. (McCleskey and Gold, 1999). |
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.7e-26 Score=194.64 Aligned_cols=236 Identities=19% Similarity=0.142 Sum_probs=179.1
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.|++-+-.+...|+.+.++.... -++ ..+. ..+++|++++|.|+-.|+...+..++. ++...|..+-.+.+|+.+
T Consensus 61 lge~~~~~~~~s~nsd~~v~s~~-~~~-~~~~-~t~p~g~~~~~v~ap~~s~~k~sttlt--N~~rgnevs~~p~s~~sl 135 (296)
T KOG0502|consen 61 LGESLLTVAVRSGNSDVAVQSAQ-LDP-DAID-ETDPEGWSALLVAAPCGSVDKVSTTLT--NGARGNEVSLMPWSPLSL 135 (296)
T ss_pred cCCcccchhhhcCCcHHHHHhhc-cCC-CCCC-CCCchhhhhhhhcCCCCCcceeeeeec--ccccCCccccccCChhhH
Confidence 45666677888888888888777 444 3333 567889999999999999999999998 888899999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
++...+.+.+..+.+.. .|..|+.|.|||.+|++.|+.++|++|++.|+|+...
T Consensus 136 sVhql~L~~~~~~~~n~---VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~l----------------------- 189 (296)
T KOG0502|consen 136 SVHQLHLDVVDLLVNNK---VNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDAL----------------------- 189 (296)
T ss_pred HHHHHHHHHHHHHhhcc---ccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhh-----------------------
Confidence 99888888887776653 3678999999999999999999999999999874333
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
.+...++|.+|++.|.. + +++.++.++ .+++..|-+|-|||.+|++
T Consensus 190 ------------gk~resALsLAt~ggyt-----------------d----iV~lLL~r~-vdVNvyDwNGgTpLlyAvr 235 (296)
T KOG0502|consen 190 ------------GKYRESALSLATRGGYT-----------------D----IVELLLTRE-VDVNVYDWNGGTPLLYAVR 235 (296)
T ss_pred ------------hhhhhhhHhHHhcCChH-----------------H----HHHHHHhcC-CCcceeccCCCceeeeeec
Confidence 33344555555555533 2 233444444 4455555667777777777
Q ss_pred cCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 248 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
.|+.++++.|++.|++ ++..|..|++++..|+..|+. +|+..+++-+. .+.+|+.-.||+|
T Consensus 236 gnhvkcve~Ll~sGAd-~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~l----kl~Q~~~~~~~~~ 296 (296)
T KOG0502|consen 236 GNHVKCVESLLNSGAD-VTQEDDSGYWIMDLAVALGYR-IVQQVIEKHAL----KLCQDSEKRTPLH 296 (296)
T ss_pred CChHHHHHHHHhcCCC-cccccccCCcHHHHHHHhhhH-HHHHHHHHHHH----HHhhcccCCCCCC
Confidence 7788888888888888 788888888888888888877 77777776655 5668888888876
|
|
| >PF13962 PGG: Domain of unknown function | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-24 Score=179.01 Aligned_cols=109 Identities=39% Similarity=0.653 Sum_probs=97.1
Q ss_pred hHHHHHHHhhHHHHHHHHHHHhhhhhcccCCCCCCC---CCcccccCcc-chhHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 044420 380 ELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNN---KGIPIHLRET-LFQVFAMSDVMALSSSSISILMFLSILTSR 455 (545)
Q Consensus 380 ~~~~~~~~~~~~vva~Liatv~faa~~t~Pgg~~~~---~g~~~~~~~~-~f~~f~~~n~~a~~~s~~~~~~~~~~~~~~ 455 (545)
+||++++++++++||+|||||||+|+||||||++|+ .|+|++.+++ .|++|+++|++||++|+++++++++.+
T Consensus 1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~~l~~~~--- 77 (113)
T PF13962_consen 1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIFLLISGL--- 77 (113)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHHHHHHHh---
Confidence 478999999999999999999999999999999876 6999998887 999999999999999999998877422
Q ss_pred ccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 044420 456 YAETDFLKSLPLKLMIGLSALFISIINMMVAFSTTFFLA 494 (545)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~m~~af~~~~~~v 494 (545)
.++.+..+..+.++..++++++.+|++||++|+|+|
T Consensus 78 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~Af~~g~~~v 113 (113)
T PF13962_consen 78 ---DDFRRFLRRYLLIASVLMWIALISMMVAFAAGIYLV 113 (113)
T ss_pred ---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 344556666788889999999999999999999875
|
|
| >PLN03192 Voltage-dependent potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-24 Score=235.51 Aligned_cols=179 Identities=22% Similarity=0.105 Sum_probs=156.3
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.++.++||.||..|+.+.++.|++ .+ .+++ ..|.+|+||||+|+..|+.+++++|++ +|++++.+|.+|+||
T Consensus 521 ~~~~~~~~L~~Aa~~g~~~~l~~Ll~--~G-~d~n-~~d~~G~TpLh~Aa~~g~~~~v~~Ll~--~gadin~~d~~G~Tp 594 (823)
T PLN03192 521 DDPNMASNLLTVASTGNAALLEELLK--AK-LDPD-IGDSKGRTPLHIAASKGYEDCVLVLLK--HACNVHIRDANGNTA 594 (823)
T ss_pred CCccchhHHHHHHHcCCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcChHHHHHHHHh--cCCCCCCcCCCCCCH
Confidence 34457899999999999999999999 66 6666 789999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|++.++.. ....|.+|||.|+..|+.+++++|+++|++++
T Consensus 595 L~~A~~~g~~~iv~~L~~~~~~~---~~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin---------------------- 649 (823)
T PLN03192 595 LWNAISAKHHKIFRILYHFASIS---DPHAAGDLLCTAAKRNDLTAMKELLKQGLNVD---------------------- 649 (823)
T ss_pred HHHHHHhCCHHHHHHHHhcCccc---CcccCchHHHHHHHhCCHHHHHHHHHCCCCCC----------------------
Confidence 99999999999999999887653 24567899999999999999999999988622
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
. .|.+|.||||+
T Consensus 650 -------------~-------------------------------------------------------~d~~G~TpLh~ 661 (823)
T PLN03192 650 -------------S-------------------------------------------------------EDHQGATALQV 661 (823)
T ss_pred -------------C-------------------------------------------------------CCCCCCCHHHH
Confidence 2 22566788888
Q ss_pred HHhcCcHHHHHHHHHHCCCcccccccCC-CcHHHHHHHhC
Q 044420 245 AAELGNFEFLAELICSYPDLVHELDDNN-RSIFHIAVLHR 283 (545)
Q Consensus 245 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G-~t~Lh~A~~~~ 283 (545)
|+..|+.+++++|+++|++ ++..|.+| .||++++....
T Consensus 662 A~~~g~~~iv~~Ll~~GAd-v~~~~~~g~~t~~~l~~~~~ 700 (823)
T PLN03192 662 AMAEDHVDMVRLLIMNGAD-VDKANTDDDFSPTELRELLQ 700 (823)
T ss_pred HHHCCcHHHHHHHHHcCCC-CCCCCCCCCCCHHHHHHHHH
Confidence 8888899999999999999 88899888 89988875543
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-25 Score=226.78 Aligned_cols=309 Identities=17% Similarity=0.130 Sum_probs=236.7
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ-DRNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~Tp 84 (545)
..+-.|+|-.||..|+.|.|+.|+. .| +.+. .+|+.|.+||.+|+-.||..+|+.|++ +.++++.+ |+.++|+
T Consensus 754 e~n~~t~LT~acaggh~e~vellv~--rg-anie-hrdkkgf~plImaatagh~tvV~~llk--~ha~veaQsdrtkdt~ 827 (2131)
T KOG4369|consen 754 EPNIKTNLTSACAGGHREEVELLVV--RG-ANIE-HRDKKGFVPLIMAATAGHITVVQDLLK--AHADVEAQSDRTKDTM 827 (2131)
T ss_pred CccccccccccccCccHHHHHHHHH--hc-cccc-ccccccchhhhhhcccCchHHHHHHHh--hhhhhhhhcccccCce
Confidence 3446788889999999999999888 44 4444 688889999999999999999999998 67777754 5678899
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCC--CCChhhHHHHHHhcCcH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLT--PEDQNALFFTCISTDLH 162 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~--~~~~t~l~~aa~~~~~~ 162 (545)
|-+||..|..++|++||..|++- ..+|-...|||.+|...|..++++.|+.+|..++... ..|-.||+.++..+..
T Consensus 828 lSlacsggr~~vvelLl~~gank-ehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~- 905 (2131)
T KOG4369|consen 828 LSLACSGGRTRVVELLLNAGANK-EHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQ- 905 (2131)
T ss_pred EEEecCCCcchHHHHHHHhhccc-cccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhcccc-
Confidence 99999999999999999998885 6788888899999999999999999999997766653 4566788888887664
Q ss_pred HHHHHHHHhCCCccccc-CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChH
Q 044420 163 DLALKLLEDHSGLAVAR-DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHL 241 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tp 241 (545)
...+.|.+.|.++|.. ..+-+|+|-+|+..|..+. +..|+... .+...+-+.|.||
T Consensus 906 -~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~ev---------------------v~lLLa~~-anvehRaktgltp 962 (2131)
T KOG4369|consen 906 -AATLSLLQPGSDINAQIETNRNTALTLALFQGRPEV---------------------VFLLLAAQ-ANVEHRAKTGLTP 962 (2131)
T ss_pred -HHHHHHhcccchhccccccccccceeeccccCcchH---------------------HHHHHHHh-hhhhhhcccCCcc
Confidence 5556777777777764 4566788888888887643 33344333 4455556778888
Q ss_pred HHHHHhcCcHHHHHHHHHHCCCccccc--ccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 242 LFDAAELGNFEFLAELICSYPDLVHEL--DDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 242 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
|+-++..|.+|+=+.|+..|+| .+.- -..-.|+|-+++..||.+.++.|++..+. +..+|++|+|+|-+|+.-
T Consensus 963 lme~AsgGyvdvg~~li~~gad-~nasPvp~T~dtalti~a~kGh~kfv~~lln~~at----v~v~NkkG~T~Lwla~~G 1037 (2131)
T KOG4369|consen 963 LMEMASGGYVDVGNLLIAAGAD-TNASPVPNTWDTALTIPANKGHTKFVPKLLNGDAT----VRVPNKKGCTVLWLASAG 1037 (2131)
T ss_pred cchhhcCCccccchhhhhcccc-cccCCCCCcCCccceeecCCCchhhhHHhhCCccc----eecccCCCCcccchhccC
Confidence 8888888888888888888888 4432 22334788888888888888888877666 566888888888888888
Q ss_pred CCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhH
Q 044420 320 PHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFS 369 (545)
Q Consensus 320 ~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~ 369 (545)
|+...+.+|.+ +.++.+..|+.-.|++.-|.
T Consensus 1038 g~lss~~il~~-------------------~~ad~d~qdnr~~S~~maaf 1068 (2131)
T KOG4369|consen 1038 GALSSCPILVS-------------------SVADADQQDNRTNSRTMAAF 1068 (2131)
T ss_pred CccccchHHhh-------------------cccChhhhhcccccccHHHH
Confidence 88887777632 25566777777777776654
|
|
| >KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-25 Score=226.34 Aligned_cols=294 Identities=17% Similarity=0.131 Sum_probs=253.8
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+..|.+||.+|+-.|+..+|+.|+. +. .++....|+.++|+|.+||..|+.++|++||. .|++-..++....||
T Consensus 786 rdkkgf~plImaatagh~tvV~~llk--~h-a~veaQsdrtkdt~lSlacsggr~~vvelLl~--~gankehrnvsDytP 860 (2131)
T KOG4369|consen 786 RDKKGFVPLIMAATAGHITVVQDLLK--AH-ADVEAQSDRTKDTMLSLACSGGRTRVVELLLN--AGANKEHRNVSDYTP 860 (2131)
T ss_pred cccccchhhhhhcccCchHHHHHHHh--hh-hhhhhhcccccCceEEEecCCCcchHHHHHHH--hhccccccchhhcCc
Confidence 45679999999999999999999999 66 78888899999999999999999999999999 799999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCccccc-CCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCCh-hhHHHHHHhcCcH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLT-MRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQ-NALFFTCISTDLH 162 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-t~l~~aa~~~~~~ 162 (545)
|-+|...|.+++++.|+..|.++.. .-.+.|-+||++|..+||.+.++.|++.|.|++..-+.++ |+|-.++..+..
T Consensus 861 lsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqgr~- 939 (2131)
T KOG4369|consen 861 LSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQGRP- 939 (2131)
T ss_pred hhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccCcc-
Confidence 9999999999999999999988732 2346799999999999999999999999999876655554 666667666553
Q ss_pred HHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc-hhhhhhccCCChH
Q 044420 163 DLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD-SEFTDLIRKPSHL 241 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~g~tp 241 (545)
.+..+|+.+.+++..+-+.|.|||.-++..|..+. -+.|+..+. .+..-.-....|+
T Consensus 940 -evv~lLLa~~anvehRaktgltplme~AsgGyvdv---------------------g~~li~~gad~nasPvp~T~dta 997 (2131)
T KOG4369|consen 940 -EVVFLLLAAQANVEHRAKTGLTPLMEMASGGYVDV---------------------GNLLIAAGADTNASPVPNTWDTA 997 (2131)
T ss_pred -hHHHHHHHHhhhhhhhcccCCcccchhhcCCcccc---------------------chhhhhcccccccCCCCCcCCcc
Confidence 66788888889999999999999999999997653 233333332 1112222445799
Q ss_pred HHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCC
Q 044420 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321 (545)
Q Consensus 242 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 321 (545)
|-+++..||...++.|+...+. ++.+|++|.|+|.+|+..|+...+.+|++++++ ++.+|+..+|+++-|.+.|+
T Consensus 998 lti~a~kGh~kfv~~lln~~at-v~v~NkkG~T~Lwla~~Gg~lss~~il~~~~ad----~d~qdnr~~S~~maafRKgh 1072 (2131)
T KOG4369|consen 998 LTIPANKGHTKFVPKLLNGDAT-VRVPNKKGCTVLWLASAGGALSSCPILVSSVAD----ADQQDNRTNSRTMAAFRKGH 1072 (2131)
T ss_pred ceeecCCCchhhhHHhhCCccc-eecccCCCCcccchhccCCccccchHHhhcccC----hhhhhcccccccHHHHHhch
Confidence 9999999999999999998888 899999999999999999999999999999999 67899999999999999999
Q ss_pred CCccccccch
Q 044420 322 PSRVSIVSGA 331 (545)
Q Consensus 322 ~~~~~~L~~~ 331 (545)
.+||++....
T Consensus 1073 ~~iVk~mv~~ 1082 (2131)
T KOG4369|consen 1073 FAIVKKMVPP 1082 (2131)
T ss_pred hheeccccCc
Confidence 9999987543
|
|
| >KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=213.70 Aligned_cols=230 Identities=20% Similarity=0.164 Sum_probs=189.2
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
++.+|.|.||.||.+|+.++++.|++ +. ..+. ..+..|.+|||+|++.|+.|+++.|+. .+..+|..+..|.||
T Consensus 45 qd~~gfTalhha~Lng~~~is~llle--~e-a~ld-l~d~kg~~plhlaaw~g~~e~vkmll~--q~d~~na~~~e~~tp 118 (854)
T KOG0507|consen 45 QDYSGFTLLHHAVLNGQNQISKLLLD--YE-ALLD-LCDTKGILPLHLAAWNGNLEIVKMLLL--QTDILNAVNIENETP 118 (854)
T ss_pred cCccchhHHHHHHhcCchHHHHHHhc--ch-hhhh-hhhccCcceEEehhhcCcchHHHHHHh--cccCCCcccccCcCc
Confidence 45689999999999999999999999 43 3444 567899999999999999999999999 678999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||.|++.||.+++++|+.+|++. ..+|+.+.|+|.+|++.|..++++.|++..-+
T Consensus 119 lhlaaqhgh~dvv~~Ll~~~adp-~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~------------------------ 173 (854)
T KOG0507|consen 119 LHLAAQHGHLEVVFYLLKKNADP-FIRNNSKETVLDLASRFGRAEVVQMLLQKKFP------------------------ 173 (854)
T ss_pred cchhhhhcchHHHHHHHhcCCCc-cccCcccccHHHHHHHhhhhHHHHHHhhhccc------------------------
Confidence 99999999999999999999995 89999999999999999999999999987321
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
...+...| -..++-.+.+|||.|+++|+. ++++.+.+.+.+.+ .. .+.-|+||.
T Consensus 174 -~~~~~~~~--~~~~~~~~~~plHlaakngh~-----------------~~~~~ll~ag~din-----~~-t~~gtalhe 227 (854)
T KOG0507|consen 174 -VQSSLRVG--DIKRPFPAIYPLHLAAKNGHV-----------------ECMQALLEAGFDIN-----YT-TEDGTALHE 227 (854)
T ss_pred -hhhcccCC--CCCCCCCCcCCcchhhhcchH-----------------HHHHHHHhcCCCcc-----cc-cccchhhhh
Confidence 01122223 346788899999999999954 44444444444333 32 234699999
Q ss_pred HHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh---CchHHHHHHH
Q 044420 245 AAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH---RHANIFNLIY 292 (545)
Q Consensus 245 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~---~~~~iv~~Ll 292 (545)
|+.+|..++|++|++.|.+ ...+|.+|+|+|.+-... ...+++-++.
T Consensus 228 aalcgk~evvr~ll~~gin-~h~~n~~~qtaldil~d~~~~~~~ei~ga~~ 277 (854)
T KOG0507|consen 228 AALCGKAEVVRFLLEIGIN-THIKNQHGQTALDIIIDLQENRRYEIAGAVK 277 (854)
T ss_pred HhhcCcchhhhHHHhhccc-cccccccchHHHHHHHhcchhhhhhhhhhhh
Confidence 9999999999999999999 899999999999876643 3445554444
|
|
| >KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-24 Score=186.55 Aligned_cols=238 Identities=21% Similarity=0.143 Sum_probs=163.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+..|+.-+-.|.+.|+.+++..++.. ...-+...|.+|..++|.|+-.|+.+.+..++.+|+.. +..+-.+.+|+.++
T Consensus 59 ~~lge~~~~~~~~s~nsd~~v~s~~~-~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rg-nevs~~p~s~~sls 136 (296)
T KOG0502|consen 59 NALGESLLTVAVRSGNSDVAVQSAQL-DPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARG-NEVSLMPWSPLSLS 136 (296)
T ss_pred HhcCCcccchhhhcCCcHHHHHhhcc-CCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccC-CccccccCChhhHH
Confidence 34455555555555555555554442 22333344445555555555555555555555555554 45555555555555
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+...+.+.+..+.++ .+|..|+.|.|||..|+..|+.
T Consensus 137 Vhql~L~~~~~~~~n-------------------------------------~VN~~De~GfTpLiWAaa~G~i------ 173 (296)
T KOG0502|consen 137 VHQLHLDVVDLLVNN-------------------------------------KVNACDEFGFTPLIWAAAKGHI------ 173 (296)
T ss_pred HHHHHHHHHHHHhhc-------------------------------------cccCccccCchHhHHHHhcCch------
Confidence 555555444444332 3567888888899888888854
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
.+++.|++.+.+ ....-+...++|.+|++.|..++|+.|+++++| +|..|-+|-|||-+|++.
T Consensus 174 -----------~vV~fLL~~GAd-----p~~lgk~resALsLAt~ggytdiV~lLL~r~vd-VNvyDwNGgTpLlyAvrg 236 (296)
T KOG0502|consen 174 -----------PVVQFLLNSGAD-----PDALGKYRESALSLATRGGYTDIVELLLTREVD-VNVYDWNGGTPLLYAVRG 236 (296)
T ss_pred -----------HHHHHHHHcCCC-----hhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC-cceeccCCCceeeeeecC
Confidence 444444443333 333335668999999999999999999999999 999999999999999999
Q ss_pred CchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCC
Q 044420 283 RHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGK 362 (545)
Q Consensus 283 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~ 362 (545)
++.++++.|++.|++ ++..|..|++++.+|+..|+. +++...+. .+.+..+|+.-+
T Consensus 237 nhvkcve~Ll~sGAd----~t~e~dsGy~~mdlAValGyr-~Vqqvie~-------------------h~lkl~Q~~~~~ 292 (296)
T KOG0502|consen 237 NHVKCVESLLNSGAD----VTQEDDSGYWIMDLAVALGYR-IVQQVIEK-------------------HALKLCQDSEKR 292 (296)
T ss_pred ChHHHHHHHHhcCCC----cccccccCCcHHHHHHHhhhH-HHHHHHHH-------------------HHHHHhhcccCC
Confidence 999999999999999 788999999999999999876 44333211 123466787788
Q ss_pred Chhh
Q 044420 363 TPRE 366 (545)
Q Consensus 363 Tpl~ 366 (545)
||+|
T Consensus 293 ~~~~ 296 (296)
T KOG0502|consen 293 TPLH 296 (296)
T ss_pred CCCC
Confidence 8875
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=202.88 Aligned_cols=232 Identities=18% Similarity=0.148 Sum_probs=161.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 128 (545)
.+.-|+..|..+-|+.|+. .|++++..|.+|.|+||-+|.-.+.+||++|+++|+++ +..|.+|+||||.|+..|+.
T Consensus 43 ~~l~A~~~~d~~ev~~ll~--~ga~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~V-n~~d~e~wtPlhaaascg~~ 119 (527)
T KOG0505|consen 43 VFLEACSRGDLEEVRKLLN--RGASPNLCNVDGLTALHQACIDDNLEMVKFLVENGANV-NAQDNEGWTPLHAAASCGYL 119 (527)
T ss_pred HHHhccccccHHHHHHHhc--cCCCccccCCccchhHHHHHhcccHHHHHHHHHhcCCc-cccccccCCcchhhcccccH
Confidence 3455677777777777777 67777777777777777777777777777777777776 77777777777777777777
Q ss_pred HHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHh
Q 044420 129 DMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRL 208 (545)
Q Consensus 129 ~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ 208 (545)
.++++|+++|+++...+..|..|.-.+...... +.........+.++ -+++..
T Consensus 120 ~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~-~~l~~~~~r~gi~i------------ea~R~~-------------- 172 (527)
T KOG0505|consen 120 NIVEYLIQHGANLLAVNSDGNMPYDLAEDEATL-DVLETEMARQGIDI------------EAARKA-------------- 172 (527)
T ss_pred HHHHHHHHhhhhhhhccCCCCCccccccCcchh-HHHHHHHHHhcccH------------HHHhhh--------------
Confidence 777777777777666666666554433222211 11111111111111 111110
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHH
Q 044420 209 MHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIF 288 (545)
Q Consensus 209 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv 288 (545)
..-.+++.+-..+. .+ ......+..|-|.||.|+.+|..++.++|++.|.+ ++.+|.+|+||||.|+..++.+++
T Consensus 173 --~e~~ml~D~~q~l~-~G-~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~-~~~~D~dgWtPlHAAA~Wg~~~~~ 247 (527)
T KOG0505|consen 173 --EEQTMLDDARQWLN-AG-AELDARHARGATALHVAAANGYTEVAALLLQAGYS-VNIKDYDGWTPLHAAAHWGQEDAC 247 (527)
T ss_pred --hHHHHHHHHHHHHh-cc-ccccccccccchHHHHHHhhhHHHHHHHHHHhccC-cccccccCCCcccHHHHhhhHhHH
Confidence 01122222222222 12 22223334599999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhhccchhhhhhcccCCCCChhhhhccC
Q 044420 289 NLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 289 ~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
++|+++|++ ++.....|.||+.+|...
T Consensus 248 elL~~~ga~----~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 248 ELLVEHGAD----MDAKTKMGETPLDVADEE 274 (527)
T ss_pred HHHHHhhcc----cchhhhcCCCCccchhhh
Confidence 999999999 778999999999999874
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=186.33 Aligned_cols=88 Identities=20% Similarity=0.291 Sum_probs=47.6
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhh
Q 044420 237 KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A 316 (545)
.|+|+|++|+.+|+.++|+.||..|+| +|.+|.+|.|+|++||++||.|++++|+..... ++...|.+|-|+|.+|
T Consensus 339 ~gQTALMLAVSHGr~d~vk~LLacgAd-VNiQDdDGSTALMCA~EHGhkEivklLLA~p~c---d~sLtD~DgSTAl~IA 414 (452)
T KOG0514|consen 339 HGQTALMLAVSHGRVDMVKALLACGAD-VNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSC---DISLTDVDGSTALSIA 414 (452)
T ss_pred hcchhhhhhhhcCcHHHHHHHHHccCC-CccccCCccHHHhhhhhhChHHHHHHHhccCcc---cceeecCCCchhhhhH
Confidence 345555555555555555555555555 555555555555555555555555555543221 2444555555555555
Q ss_pred ccCCCCCccccc
Q 044420 317 AKSPHPSRVSIV 328 (545)
Q Consensus 317 ~~~~~~~~~~~L 328 (545)
...|+.+|.-+|
T Consensus 415 leagh~eIa~ml 426 (452)
T KOG0514|consen 415 LEAGHREIAVML 426 (452)
T ss_pred HhcCchHHHHHH
Confidence 555555554443
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=175.25 Aligned_cols=136 Identities=17% Similarity=0.144 Sum_probs=116.0
Q ss_pred cccCCHHhHHHHHcCChH----HHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHH---HHHHHHcCCCccccccc
Q 044420 6 YLNICVPLQKAALKGNWP----TAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGF---VEELLKLMKPEDLTLQD 78 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~----~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~---v~~Ll~~~~~~~~~~~d 78 (545)
+.++.++||.||+.|+.+ +++.|++ ++ ..++ ..|..|+||||+|+..|+.+. +++|++ .|++++.+|
T Consensus 17 ~~~~~~~l~~a~~~g~~~~l~~~~~~l~~--~g-~~~~-~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~--~Gadin~~d 90 (166)
T PHA02743 17 DEDEQNTFLRICRTGNIYELMEVAPFISG--DG-HLLH-RYDHHGRQCTHMVAWYDRANAVMKIELLVN--MGADINARE 90 (166)
T ss_pred ccCCCcHHHHHHHcCCHHHHHHHHHHHhh--cc-hhhh-ccCCCCCcHHHHHHHhCccCHHHHHHHHHH--cCCCCCCCC
Confidence 356788999999999984 4445555 55 5554 778999999999999988654 789999 899999998
Q ss_pred -CCCCcHHHHHHHhCCHHHHHHHHH-cCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCC
Q 044420 79 -RNGNTAFCFAVAAGSIHIAKIMLK-KNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPED 148 (545)
Q Consensus 79 -~~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 148 (545)
..|.||||+|+..|+.+++++|++ .|+++ +.+|..|.||||+|+..++.+++++|+++|++++..+..|
T Consensus 91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~ 161 (166)
T PHA02743 91 LGTGNTLLHIAASTKNYELAEWLCRQLGVNL-GAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIG 161 (166)
T ss_pred CCCCCcHHHHHHHhCCHHHHHHHHhccCCCc-cCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCC
Confidence 589999999999999999999995 79987 8899999999999999999999999999999876666554
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=175.12 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=107.7
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcC----CCCchhhhhccCCCCCcHHHHHHHcCC----HHHHHHHHHcCCCccccc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGN----EDPRSILCAGIAKGYETLLHLAAGARQ----TGFVEELLKLMKPEDLTL 76 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~----~~~~~~~~~~~~~~g~T~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~ 76 (545)
.+.+|.||||+||+.|+.++++.|+.. ..+ ..++ .+|..|+||||+|+..|+ .+++++|++ .|++++.
T Consensus 17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~g-a~in-~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~--~gadin~ 92 (169)
T PHA02741 17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHA-AALN-ATDDAGQMCIHIAAEKHEAQLAAEIIDHLIE--LGADINA 92 (169)
T ss_pred cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhh-hhhh-ccCCCCCcHHHHHHHcCChHHHHHHHHHHHH--cCCCCCC
Confidence 456788999999999999999887541 123 3443 778889999999999888 588888888 7888998
Q ss_pred ccC-CCCcHHHHHHHhCCHHHHHHHHH-cCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 77 QDR-NGNTAFCFAVAAGSIHIAKIMLK-KNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 77 ~d~-~g~TpLh~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+|. .|+||||+|+..++.+++++|++ .|+++ +.+|.+|+||||+|+..++.+++++|++.++.
T Consensus 93 ~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~-~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~ 157 (169)
T PHA02741 93 QEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDL-HFCNADNKSPFELAIDNEDVAMMQILREIVAT 157 (169)
T ss_pred CCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 885 89999999999999999999997 48886 78888999999999999999999999887653
|
|
| >KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=193.46 Aligned_cols=229 Identities=18% Similarity=0.118 Sum_probs=185.2
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
-.+..|+..|+.+-|..|+. .+ +..+ ..+.+|.|+||-||.-.+.++|++|++ +|+++|..|..|+||||.|+.
T Consensus 42 a~~l~A~~~~d~~ev~~ll~--~g-a~~~-~~n~DglTalhq~~id~~~e~v~~l~e--~ga~Vn~~d~e~wtPlhaaas 115 (527)
T KOG0505|consen 42 AVFLEACSRGDLEEVRKLLN--RG-ASPN-LCNVDGLTALHQACIDDNLEMVKFLVE--NGANVNAQDNEGWTPLHAAAS 115 (527)
T ss_pred HHHHhccccccHHHHHHHhc--cC-CCcc-ccCCccchhHHHHHhcccHHHHHHHHH--hcCCccccccccCCcchhhcc
Confidence 34677899999999999999 55 5554 789999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-ccCCccCCCCChhhHHHHHHhcC---cHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD-AKAKDNLTPEDQNALFFTCISTD---LHDLAL 166 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~aa~~~~---~~~~~~ 166 (545)
.|+..++++|+.+|+++ ...|.+|..|+..+...-..++...-... |.+ .-++.... ..+.+.
T Consensus 116 cg~~~i~~~li~~gA~~-~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~------------iea~R~~~e~~ml~D~~ 182 (527)
T KOG0505|consen 116 CGYLNIVEYLIQHGANL-LAVNSDGNMPYDLAEDEATLDVLETEMARQGID------------IEAARKAEEQTMLDDAR 182 (527)
T ss_pred cccHHHHHHHHHhhhhh-hhccCCCCCccccccCcchhHHHHHHHHHhccc------------HHHHhhhhHHHHHHHHH
Confidence 99999999999999998 78899999999988765555555443322 222 11111111 112333
Q ss_pred HHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHH
Q 044420 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAA 246 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~ 246 (545)
..+. .|...+..+..|-|.||.|+.+|.. ++ .+.|++.+ .+.+..|.+|+||||.|+
T Consensus 183 q~l~-~G~~~d~~~~rG~T~lHvAaa~Gy~-----------------e~----~~lLl~ag-~~~~~~D~dgWtPlHAAA 239 (527)
T KOG0505|consen 183 QWLN-AGAELDARHARGATALHVAAANGYT-----------------EV----AALLLQAG-YSVNIKDYDGWTPLHAAA 239 (527)
T ss_pred HHHh-ccccccccccccchHHHHHHhhhHH-----------------HH----HHHHHHhc-cCcccccccCCCcccHHH
Confidence 3444 7888888888899999999999954 33 44455555 556678899999999999
Q ss_pred hcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 247 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
..|..++++.|++++++ .+.....|.||+.+|...
T Consensus 240 ~Wg~~~~~elL~~~ga~-~d~~t~~g~~p~dv~dee 274 (527)
T KOG0505|consen 240 HWGQEDACELLVEHGAD-MDAKTKMGETPLDVADEE 274 (527)
T ss_pred HhhhHhHHHHHHHhhcc-cchhhhcCCCCccchhhh
Confidence 99999999999999999 899999999999998753
|
|
| >KOG0514 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.2e-22 Score=186.09 Aligned_cols=163 Identities=23% Similarity=0.271 Sum_probs=107.1
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc-----CCHHHHHHHHHcccCCccCCCCC
Q 044420 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL-----AQRDMALYLYDDAKAKDNLTPED 148 (545)
Q Consensus 74 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~-----g~~~iv~~Ll~~~~~~~~~~~~~ 148 (545)
+|..|.+|+|+||||+..+++++|+.||+.|..-.+.+|+-|.||+++|+.. .+.++|+.|.+.|.
T Consensus 261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--------- 331 (452)
T KOG0514|consen 261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--------- 331 (452)
T ss_pred hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC---------
Confidence 3555555666666666666666666666555433355555566666555532 23344444444332
Q ss_pred hhhHHHHHHhcCcHHHHHHHHHhCCCccccc-CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCC
Q 044420 149 QNALFFTCISTDLHDLALKLLEDHSGLAVAR-DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRD 227 (545)
Q Consensus 149 ~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~-d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 227 (545)
+|.+ ...|+|+|++|+..|+.+ +++.|+..+
T Consensus 332 ---------------------------VNaKAsQ~gQTALMLAVSHGr~d---------------------~vk~LLacg 363 (452)
T KOG0514|consen 332 ---------------------------VNAKASQHGQTALMLAVSHGRVD---------------------MVKALLACG 363 (452)
T ss_pred ---------------------------cchhhhhhcchhhhhhhhcCcHH---------------------HHHHHHHcc
Confidence 1111 234555555555555431 233344444
Q ss_pred chhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 228 DSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 228 ~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
.+++.+|.+|.|+|++||++||.|+++.||......+...|.+|.|+|.+|-..||.||.-+|..+
T Consensus 364 -AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~ 429 (452)
T KOG0514|consen 364 -ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH 429 (452)
T ss_pred -CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence 455667799999999999999999999999875544889999999999999999999999999865
|
|
| >PHA02743 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-21 Score=170.69 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=34.5
Q ss_pred CChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCC
Q 044420 238 PSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQ 309 (545)
Q Consensus 238 g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G 309 (545)
|.||||+|+..|+.+++++|++ .+++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.++..|
T Consensus 94 g~TpLh~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~----~~~~~~~~ 161 (166)
T PHA02743 94 GNTLLHIAASTKNYELAEWLCRQLGVN-LGAINYQHETAYHIAYKMRDRRMMEILRANGAV----CDDPLSIG 161 (166)
T ss_pred CCcHHHHHHHhCCHHHHHHHHhccCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcccCC
Confidence 3444444444445555555553 4444 455555555555555555555555555555555 34444444
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.9e-21 Score=171.02 Aligned_cols=133 Identities=14% Similarity=0.117 Sum_probs=109.7
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcC-CCCchhhhhccCCCCCcHHHHHHHcCCH---HHHHHHHHcCCCccccccc-C
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGN-EDPRSILCAGIAKGYETLLHLAAGARQT---GFVEELLKLMKPEDLTLQD-R 79 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~-~~~~~~~~~~~~~~g~T~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~d-~ 79 (545)
.+.+|.||||+||+.|+.+.+...... ...........|.+|+||||+|+..|+. +++++|++ .|++++.+| .
T Consensus 13 ~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~--~gadin~~~~~ 90 (154)
T PHA02736 13 PDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLME--WGADINGKERV 90 (154)
T ss_pred cCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHH--cCCCccccCCC
Confidence 456799999999999985332221110 0110112236789999999999999987 46889999 899999998 4
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 80 NGNTAFCFAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 80 ~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
.|+||||+|+..|+.+++++|+++ |+++ +.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 91 ~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~-n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~ 151 (154)
T PHA02736 91 FGNTPLHIAVYTQNYELATWLCNQPGVNM-EILNYAFKTPYYVACERHDAKMMNILRAKGAQ 151 (154)
T ss_pred CCCcHHHHHHHhCCHHHHHHHHhCCCCCC-ccccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 899999999999999999999984 8887 89999999999999999999999999999986
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=9.6e-20 Score=186.10 Aligned_cols=215 Identities=18% Similarity=0.198 Sum_probs=167.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCC-------CcccccccCCCCcHHHHHHHh---CCHHHHHHHHHcCccccc----CC
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMK-------PEDLTLQDRNGNTAFCFAVAA---GSIHIAKIMLKKNERLLT----MR 111 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~-------~~~~~~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~----~~ 111 (545)
.+.++..|...+..+..+-|++... ..+++.+...|+|.||.|..+ ++.++++.|++.-+.+.| ..
T Consensus 101 d~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~e 180 (782)
T KOG3676|consen 101 DRDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSE 180 (782)
T ss_pred chhhhhhccccccHHHHhccchhhhhhhhhhhhhccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhH
Confidence 3367888888999888888887311 256777788899999999974 567999999998876544 23
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHH
Q 044420 112 GGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLA 191 (545)
Q Consensus 112 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~ 191 (545)
...|+||||.|+.+.+.++|++|++.|+|++..- . |.-....|..+..
T Consensus 181 eY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa------------~--------------G~FF~~~dqk~~r------ 228 (782)
T KOG3676|consen 181 EYYGQSALHIAIVNRDAELVRLLLAAGADVHARA------------C--------------GAFFCPDDQKASR------ 228 (782)
T ss_pred hhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh------------h--------------ccccCcccccccc------
Confidence 4679999999999999999999999999843221 1 1111111111100
Q ss_pred hCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccC
Q 044420 192 RKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN 271 (545)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 271 (545)
+.-+. .-.-..|+.||-.||..++.|++++|+++++| ++.+|++
T Consensus 229 k~T~Y-----------------------------------~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd-~~aqDS~ 272 (782)
T KOG3676|consen 229 KSTNY-----------------------------------TGYFYFGEYPLSFAACTNQPEIVRLLLAHGAD-PNAQDSN 272 (782)
T ss_pred cccCC-----------------------------------cceeeeccCchHHHHHcCCHHHHHHHHhcCCC-CCccccC
Confidence 00000 00115689999999999999999999999999 9999999
Q ss_pred CCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 272 NRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 272 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
|+|.||..+.+-..++.++++++|++ .+...+|++|-|||-+|++.|..++.+.+.+
T Consensus 273 GNTVLH~lVi~~~~~My~~~L~~ga~--~l~~v~N~qgLTPLtLAaklGk~emf~~ile 329 (782)
T KOG3676|consen 273 GNTVLHMLVIHFVTEMYDLALELGAN--ALEHVRNNQGLTPLTLAAKLGKKEMFQHILE 329 (782)
T ss_pred CChHHHHHHHHHHHHHHHHHHhcCCC--ccccccccCCCChHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999998 2366799999999999999999998887743
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-20 Score=154.45 Aligned_cols=145 Identities=21% Similarity=0.172 Sum_probs=131.2
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 128 (545)
.+-.|+..+....|+.||++ ....+|.+|.+|.||||-|+.+||.+||+.|+..|++. +.+...|+||||-||.-.+.
T Consensus 66 l~lwaae~nrl~eV~~lL~e-~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~-~a~T~~GWTPLhSAckWnN~ 143 (228)
T KOG0512|consen 66 LLLWAAEKNRLTEVQRLLSE-KANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANK-EAKTNEGWTPLHSACKWNNF 143 (228)
T ss_pred HHHHHHhhccHHHHHHHHHh-ccccccccccccccHHHHHHhcCchHHHHHHHHccCCc-ccccccCccchhhhhcccch
Confidence 46789999999999999986 66678999999999999999999999999999999996 88889999999999999999
Q ss_pred HHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCC
Q 044420 129 DMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPS 195 (545)
Q Consensus 129 ~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~ 195 (545)
+++-.|+++|+|++.......||||.+|...+....+..+|......+..++..+.||+.+|-+.+-
T Consensus 144 ~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT~~ 210 (228)
T KOG0512|consen 144 EVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRTSM 210 (228)
T ss_pred hHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHhhh
Confidence 9999999999998888888899999999998888888888888888999999999999999988763
|
|
| >PHA02741 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.7e-20 Score=165.07 Aligned_cols=131 Identities=15% Similarity=0.173 Sum_probs=113.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcC----CCcccccccCCCCcHHHHHHHhCC----HHHHHHHHHcCcccccCCC
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLM----KPEDLTLQDRNGNTAFCFAVAAGS----IHIAKIMLKKNERLLTMRG 112 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~----~~~~~~~~d~~g~TpLh~A~~~g~----~~iv~~Ll~~~~~~~~~~~ 112 (545)
.+|..|.||||+|++.|+.++++.|+... .+++++.+|..|.||||+|+..|+ .+++++|++.|+++ +.++
T Consensus 16 ~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadi-n~~~ 94 (169)
T PHA02741 16 EKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADI-NAQE 94 (169)
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCC-CCCC
Confidence 56788999999999999999999986531 368899999999999999999999 58999999999997 7777
Q ss_pred C-CCCcHHHHHHHcCCHHHHHHHHH-cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCC
Q 044420 113 G-ENMTPLYMAAVLAQRDMALYLYD-DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSG 174 (545)
Q Consensus 113 ~-~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~ 174 (545)
. +|.||||+|+..++.+++++|++ .|++++..+..|.||++.|+..+.. .+.++|.++++
T Consensus 95 ~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~--~iv~~L~~~~~ 156 (169)
T PHA02741 95 MLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDV--AMMQILREIVA 156 (169)
T ss_pred cCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCH--HHHHHHHHHHH
Confidence 5 89999999999999999999997 5899888899999999999988653 55566666543
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.6e-20 Score=174.60 Aligned_cols=113 Identities=13% Similarity=0.127 Sum_probs=89.1
Q ss_pred ccCCCCCc-HHHHHHHcCCHHHHHHHHHcCCCccccccc----CCCCcHHHHHHHhCCHHHHHHHHHcCcccccCC-CCC
Q 044420 41 GIAKGYET-LLHLAAGARQTGFVEELLKLMKPEDLTLQD----RNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMR-GGE 114 (545)
Q Consensus 41 ~~~~~g~T-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d----~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~-~~~ 114 (545)
.+|..|.| +||.|++.|+.+++++|++ +|++++.++ ..|.||||+|+..|+.+++++|+++|+++ +.+ +..
T Consensus 27 ~~d~~~~~~lL~~A~~~~~~eivk~LL~--~GAdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADV-N~~~~~~ 103 (300)
T PHA02884 27 KKNKICIANILYSSIKFHYTDIIDAILK--LGADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADV-NRYAEEA 103 (300)
T ss_pred ccCcCCCCHHHHHHHHcCCHHHHHHHHH--CCCCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-CcccCCC
Confidence 45666665 5666777789999999999 799999874 58999999999999999999999999997 664 567
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHH
Q 044420 115 NMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTC 156 (545)
Q Consensus 115 g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa 156 (545)
|.||||+|+..|+.+++++|+++|++++..+..|.||+|.|+
T Consensus 104 g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~ 145 (300)
T PHA02884 104 KITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELAL 145 (300)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Confidence 999999999999999999999998874444444444444443
|
|
| >PHA02884 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.8e-19 Score=170.76 Aligned_cols=68 Identities=13% Similarity=0.083 Sum_probs=45.3
Q ss_pred cccccCCCCcH-HHHHHHhCCHHHHHHHHHcCcccccCC----CCCCCcHHHHHHHcCCHHHHHHHHHcccCCc
Q 044420 74 LTLQDRNGNTA-FCFAVAAGSIHIAKIMLKKNERLLTMR----GGENMTPLYMAAVLAQRDMALYLYDDAKAKD 142 (545)
Q Consensus 74 ~~~~d~~g~Tp-Lh~A~~~g~~~iv~~Ll~~~~~~~~~~----~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~ 142 (545)
+..+|..|.|+ ||.|+..|+.++++.|+++|+++ +.+ +..|.||||+|++.|+.+++++|+++|++++
T Consensus 25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi-N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN 97 (300)
T PHA02884 25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP-EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVN 97 (300)
T ss_pred hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc-cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcC
Confidence 34556666554 44455557777777777777775 554 3467777777777777777777777777633
|
|
| >KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.2e-20 Score=151.82 Aligned_cols=142 Identities=20% Similarity=0.117 Sum_probs=122.2
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
--+.+|+..|.+..|+.||+ +.+ ..++ .+|.+|.||||.|+.+||.+||+.|+. .|++++.+...|+||||-||.
T Consensus 65 rl~lwaae~nrl~eV~~lL~-e~a-n~vN-trD~D~YTpLHRAaYn~h~div~~ll~--~gAn~~a~T~~GWTPLhSAck 139 (228)
T KOG0512|consen 65 RLLLWAAEKNRLTEVQRLLS-EKA-NHVN-TRDEDEYTPLHRAAYNGHLDIVHELLL--SGANKEAKTNEGWTPLHSACK 139 (228)
T ss_pred HHHHHHHhhccHHHHHHHHH-hcc-cccc-ccccccccHHHHHHhcCchHHHHHHHH--ccCCcccccccCccchhhhhc
Confidence 34788999999999999999 555 5555 899999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHH-HHHHHH-HcccCCccCCCCChhhHHHHHHh
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRD-MALYLY-DDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~-iv~~Ll-~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
.++.+++-.|+++|+++ +...+...||||+||...+.. .+++|+ ..+..+-..+..+.||+.+|-..
T Consensus 140 WnN~~va~~LLqhgaDV-nA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~~iARRT 208 (228)
T KOG0512|consen 140 WNNFEVAGRLLQHGADV-NAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAFDIARRT 208 (228)
T ss_pred ccchhHHHHHHhccCcc-cccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHHHHHHHh
Confidence 99999999999999998 888889999999999887754 456655 34455555667777888777544
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.7e-19 Score=161.81 Aligned_cols=156 Identities=19% Similarity=0.117 Sum_probs=133.3
Q ss_pred HHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCC
Q 044420 14 QKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGS 93 (545)
Q Consensus 14 ~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~ 93 (545)
+.=|+.|+.-.|+..++ ... .+++ .-|..|.+|||+||+.||..+|+.|+. +|+.+|..|....||||+|+..||
T Consensus 5 f~wcregna~qvrlwld-~te-hdln-~gddhgfsplhwaakegh~aivemll~--rgarvn~tnmgddtplhlaaahgh 79 (448)
T KOG0195|consen 5 FGWCREGNAFQVRLWLD-DTE-HDLN-VGDDHGFSPLHWAAKEGHVAIVEMLLS--RGARVNSTNMGDDTPLHLAAAHGH 79 (448)
T ss_pred hhhhhcCCeEEEEEEec-Ccc-cccc-cccccCcchhhhhhhcccHHHHHHHHh--cccccccccCCCCcchhhhhhccc
Confidence 44577888888888888 343 4444 778889999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCC
Q 044420 94 IHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS 173 (545)
Q Consensus 94 ~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~ 173 (545)
.++|+.|+++.+|+ |..|..|.|||||||.-|...+.+-|+..|+.++..+.+|.||+-.|--.- .+.+.++.++.|
T Consensus 80 rdivqkll~~kadv-navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp~l--~~~l~e~aek~g 156 (448)
T KOG0195|consen 80 RDIVQKLLSRKADV-NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKPML--KNTLLEIAEKHG 156 (448)
T ss_pred HHHHHHHHHHhccc-chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhchHH--HHHHHHHHHHhC
Confidence 99999999999998 899999999999999999999999999999999999999999987653322 135566666777
Q ss_pred Cccc
Q 044420 174 GLAV 177 (545)
Q Consensus 174 ~~~~ 177 (545)
..++
T Consensus 157 q~~n 160 (448)
T KOG0195|consen 157 QSPN 160 (448)
T ss_pred CCCC
Confidence 6665
|
|
| >PHA02736 Viral ankyrin protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-19 Score=155.53 Aligned_cols=133 Identities=13% Similarity=0.131 Sum_probs=107.0
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHc-----CCCcccccccCCCCcHHHHHHHhCCH---HHHHHHHHcCcccccCC
Q 044420 40 AGIAKGYETLLHLAAGARQTGFVEELLKL-----MKPEDLTLQDRNGNTAFCFAVAAGSI---HIAKIMLKKNERLLTMR 111 (545)
Q Consensus 40 ~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~-----~~~~~~~~~d~~g~TpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~ 111 (545)
+..|.+|.||||+||+.|+. ++++... ..+..++.+|.+|.||||+|+..|+. +++++|++.|+++ +.+
T Consensus 11 ~~~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadi-n~~ 87 (154)
T PHA02736 11 SEPDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADI-NGK 87 (154)
T ss_pred HhcCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCc-ccc
Confidence 46788999999999999984 3333321 01223456789999999999999987 5789999999997 777
Q ss_pred C-CCCCcHHHHHHHcCCHHHHHHHHH-cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccc
Q 044420 112 G-GENMTPLYMAAVLAQRDMALYLYD-DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV 177 (545)
Q Consensus 112 ~-~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~ 177 (545)
+ .+|.||||+|+..|+.+++++|++ .|++++..+..|.||+|+|+..+. ..+.++|..+|++.+
T Consensus 88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~--~~i~~~Ll~~ga~~~ 153 (154)
T PHA02736 88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHD--AKMMNILRAKGAQCK 153 (154)
T ss_pred CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCC--HHHHHHHHHcCCCCC
Confidence 7 589999999999999999999998 489988899999999999997754 345567777776543
|
|
| >KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-19 Score=157.01 Aligned_cols=132 Identities=23% Similarity=0.254 Sum_probs=111.8
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
-.+..|.+|||+||+.|+..+|+.|++ .| +-++ ..+....||||+|+..||.++|+.|++ ..+|+|+.|..|+|
T Consensus 29 ~gddhgfsplhwaakegh~aivemll~--rg-arvn-~tnmgddtplhlaaahghrdivqkll~--~kadvnavnehgnt 102 (448)
T KOG0195|consen 29 VGDDHGFSPLHWAAKEGHVAIVEMLLS--RG-ARVN-STNMGDDTPLHLAAAHGHRDIVQKLLS--RKADVNAVNEHGNT 102 (448)
T ss_pred cccccCcchhhhhhhcccHHHHHHHHh--cc-cccc-cccCCCCcchhhhhhcccHHHHHHHHH--HhcccchhhccCCC
Confidence 345669999999999999999999999 66 6666 788889999999999999999999999 79999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKD 142 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~ 142 (545)
||||||..|...+.+-|+..|+.+ ++.|++|.|||.-|--.-...+.+.--++|.+++
T Consensus 103 plhyacfwgydqiaedli~~ga~v-~icnk~g~tpldkakp~l~~~l~e~aek~gq~~n 160 (448)
T KOG0195|consen 103 PLHYACFWGYDQIAEDLISCGAAV-NICNKKGMTPLDKAKPMLKNTLLEIAEKHGQSPN 160 (448)
T ss_pred chhhhhhhcHHHHHHHHHhcccee-eecccCCCCchhhhchHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999997 8999999999988743222222222234555443
|
|
| >KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-15 Score=156.57 Aligned_cols=144 Identities=18% Similarity=0.153 Sum_probs=104.5
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCC------chhhhhccCCCCCcHHHHHHH---cCCHHHHHHHHHcCCCccccc----
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDP------RSILCAGIAKGYETLLHLAAG---ARQTGFVEELLKLMKPEDLTL---- 76 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~------~~~~~~~~~~~g~T~Lh~A~~---~g~~~~v~~Ll~~~~~~~~~~---- 76 (545)
+.++..|...|.++.+..++..... ..+++ .+...|+|.||.|.- .++.++++.|++. .+..+|.
T Consensus 102 ~~~~~~~~~~~~l~~l~~l~~~~~~~k~r~~~w~~~-~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~-~p~lind~~~~ 179 (782)
T KOG3676|consen 102 RDALFIADSEGALSDLDGLLKFLRKSKYRLTDWKLN-ERGATGETLLHKALLNLSDGHNELARVLLEI-FPKLINDIYTS 179 (782)
T ss_pred hhhhhhccccccHHHHhccchhhhhhhhhhhhhccc-cccchhhhHHHHHHhcCchhHHHHHHHHHHH-hHHHhhhhhhh
Confidence 3788999999999999888872110 02232 557789999999987 4566999999996 4444442
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHcCccccc--------CCC--------------CCCCcHHHHHHHcCCHHHHHHH
Q 044420 77 QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLT--------MRG--------------GENMTPLYMAAVLAQRDMALYL 134 (545)
Q Consensus 77 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~--------~~~--------------~~g~tpL~~A~~~g~~~iv~~L 134 (545)
....|.||||+|+.+.+.++|++|++.|+|+.. ..| ..|+.||.+||=.++.|++++|
T Consensus 180 eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlL 259 (782)
T KOG3676|consen 180 EEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLL 259 (782)
T ss_pred HhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHH
Confidence 235699999999999999999999999999731 011 2477888888888888888888
Q ss_pred HHcccCCccCCCCChhhHHHH
Q 044420 135 YDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 135 l~~~~~~~~~~~~~~t~l~~a 155 (545)
+++|+|++..|..|.|.||..
T Consensus 260 l~~gAd~~aqDS~GNTVLH~l 280 (782)
T KOG3676|consen 260 LAHGADPNAQDSNGNTVLHML 280 (782)
T ss_pred HhcCCCCCccccCCChHHHHH
Confidence 888877444444433333333
|
|
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=132.20 Aligned_cols=86 Identities=27% Similarity=0.409 Sum_probs=48.5
Q ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHH
Q 044420 50 LHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRD 129 (545)
Q Consensus 50 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 129 (545)
||+||+.|+.+++++|++ .+.+++. |+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.+|+.+
T Consensus 1 L~~A~~~~~~~~~~~ll~--~~~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~ 73 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE--KGADINL----GNTALHYAAENGNLEIVKLLLENGADI-NSQDKNGNTALHYAAENGNLE 73 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH--TTSTTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHHTTHHH
T ss_pred CHHHHHcCCHHHHHHHHH--CcCCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHHcCCHH
Confidence 455666666666666665 4444444 555666666666666666666655554 555555666666666666666
Q ss_pred HHHHHHHcccCCc
Q 044420 130 MALYLYDDAKAKD 142 (545)
Q Consensus 130 iv~~Ll~~~~~~~ 142 (545)
++++|+++|++++
T Consensus 74 ~~~~Ll~~g~~~~ 86 (89)
T PF12796_consen 74 IVKLLLEHGADVN 86 (89)
T ss_dssp HHHHHHHTTT-TT
T ss_pred HHHHHHHcCCCCC
Confidence 6666665555533
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-17 Score=129.83 Aligned_cols=89 Identities=34% Similarity=0.462 Sum_probs=78.8
Q ss_pred hHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC
Q 044420 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG 92 (545)
Q Consensus 13 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 92 (545)
||.||+.|+.++++.|++ .+ ...+ . |+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|
T Consensus 1 L~~A~~~~~~~~~~~ll~--~~-~~~~----~-~~~~l~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~ 70 (89)
T PF12796_consen 1 LHIAAQNGNLEILKFLLE--KG-ADIN----L-GNTALHYAAENGNLEIVKLLLE--NGADINSQDKNGNTALHYAAENG 70 (89)
T ss_dssp HHHHHHTTTHHHHHHHHH--TT-STTT----S-SSBHHHHHHHTTTHHHHHHHHH--TTTCTT-BSTTSSBHHHHHHHTT
T ss_pred CHHHHHcCCHHHHHHHHH--Cc-CCCC----C-CCCHHHHHHHcCCHHHHHHHHH--hcccccccCCCCCCHHHHHHHcC
Confidence 799999999999999999 44 3333 2 9999999999999999999999 89999999999999999999999
Q ss_pred CHHHHHHHHHcCcccccCCC
Q 044420 93 SIHIAKIMLKKNERLLTMRG 112 (545)
Q Consensus 93 ~~~iv~~Ll~~~~~~~~~~~ 112 (545)
+.+++++|+++|+++ +.+|
T Consensus 71 ~~~~~~~Ll~~g~~~-~~~n 89 (89)
T PF12796_consen 71 NLEIVKLLLEHGADV-NIRN 89 (89)
T ss_dssp HHHHHHHHHHTTT-T-TSS-
T ss_pred CHHHHHHHHHcCCCC-CCcC
Confidence 999999999999997 6554
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B .... |
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-16 Score=134.63 Aligned_cols=123 Identities=28% Similarity=0.369 Sum_probs=105.1
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+.+|.||||.|++.|+.+.++.|++ .+ ... ...+..|.||||.|+..++.+++++|++ .+.+++..+..|.||+
T Consensus 4 ~~~g~t~l~~a~~~~~~~~i~~li~--~~-~~~-~~~~~~g~~~l~~a~~~~~~~~~~~ll~--~~~~~~~~~~~~~~~l 77 (126)
T cd00204 4 DEDGRTPLHLAASNGHLEVVKLLLE--NG-ADV-NAKDNDGRTPLHLAAKNGHLEIVKLLLE--KGADVNARDKDGNTPL 77 (126)
T ss_pred CcCCCCHHHHHHHcCcHHHHHHHHH--cC-CCC-CccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCCHH
Confidence 4678999999999999999999998 44 333 3678889999999999999999999998 6778888888899999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLY 135 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 135 (545)
|+|+..++.+++++|++++.+. +..+..|.||+++|...++.+++++|+
T Consensus 78 ~~a~~~~~~~~~~~L~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~Ll 126 (126)
T cd00204 78 HLAARNGNLDVVKLLLKHGADV-NARDKDGRTPLHLAAKNGHLEVVKLLL 126 (126)
T ss_pred HHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence 9999999999999999988776 678888999999999999999888874
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-15 Score=127.64 Aligned_cols=115 Identities=24% Similarity=0.344 Sum_probs=104.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.|.+|.||||+|+..|+.+++++|++ .+.+.+..+..|.||||.|+..++.++++.|++.++++ +..+..|.||+|+
T Consensus 3 ~~~~g~t~l~~a~~~~~~~~i~~li~--~~~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~~~l~~ 79 (126)
T cd00204 3 RDEDGRTPLHLAASNGHLEVVKLLLE--NGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADV-NARDKDGNTPLHL 79 (126)
T ss_pred cCcCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHH
Confidence 46789999999999999999999999 78888999999999999999999999999999999876 7888999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhc
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIST 159 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~ 159 (545)
|+..++.+++++|++++.+.+..+..+.+|++.+....
T Consensus 80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~ 117 (126)
T cd00204 80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNG 117 (126)
T ss_pred HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcC
Confidence 99999999999999999776777777778888777763
|
The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. |
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=8.5e-16 Score=114.15 Aligned_cols=104 Identities=19% Similarity=0.196 Sum_probs=89.0
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
-...+++++|..+.|+..+. .+ .+++. ...|+||||+|+.+|+.+++++|+. .|++++.+|+.|-|||.-|+.
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~--~g-~nVn~--~~ggR~plhyAAD~GQl~ilefli~--iGA~i~~kDKygITPLLsAvw 76 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVN--EG-LNVNE--IYGGRTPLHYAADYGQLSILEFLIS--IGANIQDKDKYGITPLLSAVW 76 (117)
T ss_pred hhHhhhhccCcHHHHHHHHH--cc-ccHHH--HhCCcccchHhhhcchHHHHHHHHH--hccccCCccccCCcHHHHHHH
Confidence 45678999999999999988 44 45552 3489999999999999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
.||.++|++|++.|++- ..+..+|.+.+..+
T Consensus 77 EGH~~cVklLL~~GAdr-t~~~PdG~~~~eat 107 (117)
T KOG4214|consen 77 EGHRDCVKLLLQNGADR-TIHAPDGTALIEAT 107 (117)
T ss_pred HhhHHHHHHHHHcCccc-ceeCCCchhHHhhc
Confidence 99999999999999986 77788887766543
|
|
| >KOG4214 consensus Myotrophin and similar proteins [Transcription] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-14 Score=108.19 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=89.6
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
--..+++++|.++-|+..+. .|.++|..- .|+||||+|+..|+.+++++|+..|+++ +.+|+.|-|||..|+..||
T Consensus 4 ~~~~W~vkNG~~DeVk~~v~--~g~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA~i-~~kDKygITPLLsAvwEGH 79 (117)
T KOG4214|consen 4 MSVAWNVKNGEIDEVKQSVN--EGLNVNEIY-GGRTPLHYAADYGQLSILEFLISIGANI-QDKDKYGITPLLSAVWEGH 79 (117)
T ss_pred hhHhhhhccCcHHHHHHHHH--ccccHHHHh-CCcccchHhhhcchHHHHHHHHHhcccc-CCccccCCcHHHHHHHHhh
Confidence 34678899999999999998 688887654 8999999999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHcccCCccCCCCChhhHHHHHH
Q 044420 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCI 157 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~ 157 (545)
.++|++|+++|++-....+. ++++.-|+.
T Consensus 80 ~~cVklLL~~GAdrt~~~Pd-G~~~~eate 108 (117)
T KOG4214|consen 80 RDCVKLLLQNGADRTIHAPD-GTALIEATE 108 (117)
T ss_pred HHHHHHHHHcCcccceeCCC-chhHHhhcc
Confidence 99999999999984444444 444444443
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.6e-14 Score=133.31 Aligned_cols=118 Identities=23% Similarity=0.273 Sum_probs=76.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCC-----HHHHHHHHHcCc--ccccCCCC
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGS-----IHIAKIMLKKNE--RLLTMRGG 113 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~-----~~iv~~Ll~~~~--~~~~~~~~ 113 (545)
..+..+.+++|.|+..+..+++++++. .+.+++.+|..|.||||+|+..|+ .++++.|++.|+ +..+.+|.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~ 145 (235)
T COG0666 68 ARDLDGRLPLHSAASKGDDKIVKLLLA--SGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145 (235)
T ss_pred cCCccccCHHHHHHHcCcHHHHHHHHH--cCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCC
Confidence 345556666666666666666666666 566666666666666666666666 666666666666 34455566
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 114 ENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 114 ~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
.|.||||+|+..|+.++++.|++.|++++..+..|.|+++.++..+.
T Consensus 146 ~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~ 192 (235)
T COG0666 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGR 192 (235)
T ss_pred CCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccch
Confidence 66666666666666666666666666666666666666666666554
|
|
| >COG0666 Arp FOG: Ankyrin repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.1e-13 Score=128.15 Aligned_cols=126 Identities=27% Similarity=0.284 Sum_probs=116.4
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCC-----HHHHHHHHHcCCCc---ccccc
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQ-----TGFVEELLKLMKPE---DLTLQ 77 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~-----~~~v~~Ll~~~~~~---~~~~~ 77 (545)
...+.+++|.++..++.+.+++++. .+ .++ +..+..|.||||+|+..|+ .++++.|++ .++ +.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~l~~--~~-~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~--~g~~~~~~~~~ 143 (235)
T COG0666 70 DLDGRLPLHSAASKGDDKIVKLLLA--SG-ADV-NAKDADGDTPLHLAALNGNPPEGNIEVAKLLLE--AGADLDVNNLR 143 (235)
T ss_pred CccccCHHHHHHHcCcHHHHHHHHH--cC-CCc-ccccCCCCcHHHHHHhcCCcccchHHHHHHHHH--cCCCCCCcccc
Confidence 3447899999999999999999998 66 667 5899999999999999999 999999999 788 67777
Q ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 044420 78 DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138 (545)
Q Consensus 78 d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 138 (545)
|..|+||||+|+..|+.++++.|++.|+++ +.++..|.||++.|+..++.++++.+++.+
T Consensus 144 ~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~ 203 (235)
T COG0666 144 DEDGNTPLHWAALNGDADIVELLLEAGADP-NSRNSYGVTALDPAAKNGRIELVKLLLDKG 203 (235)
T ss_pred CCCCCchhHHHHHcCchHHHHHHHhcCCCC-cccccCCCcchhhhcccchHHHHHHHHhcC
Confidence 999999999999999999999999999997 888999999999999999999999999976
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-13 Score=97.26 Aligned_cols=54 Identities=35% Similarity=0.498 Sum_probs=32.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll 101 (545)
|.||||+||+.|+.+++++|++ .+.+++.+|.+|+||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~--~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLE--HGADINAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHH--TTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 5666777777777777777776 56666666666777777777777776666664
|
... |
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-13 Score=132.12 Aligned_cols=121 Identities=18% Similarity=0.159 Sum_probs=99.6
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
-.|.-|+..|.+|+|+..+. + - .+. ...|.+|-|+||-|+..||.+||++|++ .|+++|..|.+|+||||+|+.
T Consensus 552 aLLLDaaLeGEldlVq~~i~-e-v-~Dp-SqpNdEGITaLHNAiCaghyeIVkFLi~--~ganVNa~DSdGWTPLHCAAS 625 (752)
T KOG0515|consen 552 ALLLDAALEGELDLVQRIIY-E-V-TDP-SQPNDEGITALHNAICAGHYEIVKFLIE--FGANVNAADSDGWTPLHCAAS 625 (752)
T ss_pred HHHHhhhhcchHHHHHHHHH-h-h-cCC-CCCCccchhHHhhhhhcchhHHHHHHHh--cCCcccCccCCCCchhhhhhh
Confidence 34677899999999999887 2 2 222 3667889999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHH--HHcCCHHHHHHHHHc
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMA--AVLAQRDMALYLYDD 137 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A--~~~g~~~iv~~Ll~~ 137 (545)
.++..+++.|++.|+-+...+-.++.||..-+ .+.|..++.+||..-
T Consensus 626 CNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~v 674 (752)
T KOG0515|consen 626 CNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGV 674 (752)
T ss_pred cCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHH
Confidence 99999999999999887666667888887654 356788888888753
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.4e-14 Score=98.89 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=32.3
Q ss_pred HHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhh
Q 044420 257 LICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316 (545)
Q Consensus 257 Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A 316 (545)
|+++++..++.+|..|+||||+||.+|+.+++++|++.|++ ++.+|++|+||||+|
T Consensus 1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d----~~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGAD----PNAKDKDGQTPLHYA 56 (56)
T ss_dssp -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT------TT---TTS--HHHH-
T ss_pred CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCC----CCCCcCCCCCHHHhC
Confidence 56777444899999999999999999999999999999988 788999999999987
|
|
| >PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=3e-13 Score=95.31 Aligned_cols=54 Identities=26% Similarity=0.471 Sum_probs=46.2
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLY 135 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll 135 (545)
|+||||+|++.|+.+++++|+++|.++ +.+|.+|.||||+|+..|+.+++++|+
T Consensus 1 g~t~lh~A~~~g~~~~~~~Ll~~~~di-n~~d~~g~t~lh~A~~~g~~~~~~~Ll 54 (54)
T PF13637_consen 1 GRTPLHWAARSGNLEIVKLLLEHGADI-NAQDEDGRTPLHYAAKNGNIDIVKFLL 54 (54)
T ss_dssp SSBHHHHHHHTT-HHHHHHHHHTTSGT-T-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred CChHHHHHHHhCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence 789999999999999999999999997 888999999999999999999999986
|
... |
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.4e-13 Score=118.80 Aligned_cols=124 Identities=20% Similarity=0.174 Sum_probs=110.6
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCCcHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ-DRNGNTAF 85 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpL 85 (545)
.+-..||..++-.|+.+....|++ .- ..++ .+|++|.|||..|+..|+.++|++|++ .|+|+|.. +..+.|||
T Consensus 10 d~~~~~Lle~i~Kndt~~a~~LLs--~v-r~vn-~~D~sGMs~LahAaykGnl~~v~lll~--~gaDvN~~qhg~~YTpL 83 (396)
T KOG1710|consen 10 DAPKSPLLEAIDKNDTEAALALLS--TV-RQVN-QRDPSGMSVLAHAAYKGNLTLVELLLE--LGADVNDKQHGTLYTPL 83 (396)
T ss_pred cchhhHHHHHHccCcHHHHHHHHH--Hh-hhhh-ccCCCcccHHHHHHhcCcHHHHHHHHH--hCCCcCcccccccccHH
Confidence 356789999999999999999999 33 3344 789999999999999999999999999 79999864 46689999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
|+|+.+|+.++.++|++.|+.. ...|.-|+|+-..|+.-|+.++|..+-++
T Consensus 84 mFAALSGn~dvcrllldaGa~~-~~vNsvgrTAaqmAAFVG~H~CV~iINN~ 134 (396)
T KOG1710|consen 84 MFAALSGNQDVCRLLLDAGARM-YLVNSVGRTAAQMAAFVGHHECVAIINNH 134 (396)
T ss_pred HHHHHcCCchHHHHHHhccCcc-ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence 9999999999999999999996 88999999999999999999999877554
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.7e-13 Score=143.47 Aligned_cols=103 Identities=18% Similarity=0.193 Sum_probs=93.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
+.|+.|+..|+.+.++.|++ .|+++|.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~--~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadv-n~~d~~G~TpLh~A~~~g~ 160 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT--GGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP-TLLDKDGKTPLELAEENGF 160 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCCc
Confidence 35889999999999999999 89999999999999999999999999999999999997 8999999999999999999
Q ss_pred HHHHHHHHHc-------ccCCccCCCCChhhHH
Q 044420 128 RDMALYLYDD-------AKAKDNLTPEDQNALF 153 (545)
Q Consensus 128 ~~iv~~Ll~~-------~~~~~~~~~~~~t~l~ 153 (545)
.+++++|+++ |++.+..+..|.+|+.
T Consensus 161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~ 193 (664)
T PTZ00322 161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPSL 193 (664)
T ss_pred HHHHHHHHhCCCcccccCCCCCccccCCCCccc
Confidence 9999999998 6665555555555544
|
|
| >PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-13 Score=97.14 Aligned_cols=50 Identities=26% Similarity=0.468 Sum_probs=23.4
Q ss_pred cccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 72 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
.+++.+|..|+||||+||..|+.+++++|++.|+++ +.+|.+|+||||+|
T Consensus 7 ~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~-~~~d~~G~Tpl~~A 56 (56)
T PF13857_consen 7 ADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADP-NAKDKDGQTPLHYA 56 (56)
T ss_dssp --TT---TTS--HHHHHHHHT-HHHHHHHHHCT--T-T---TTS--HHHH-
T ss_pred CCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCC-CCCcCCCCCHHHhC
Confidence 666666666667777777666777777666666665 66666667776665
|
|
| >PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-12 Score=141.60 Aligned_cols=106 Identities=22% Similarity=0.185 Sum_probs=96.2
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
+.|+.||..|+.+.++.|++ .+ .+++ ..|.+|+||||+||..|+.+++++|++ .|++++.+|.+|.||||+|+.
T Consensus 84 ~~L~~aa~~G~~~~vk~LL~--~G-adin-~~d~~G~TpLh~Aa~~g~~eiv~~LL~--~Gadvn~~d~~G~TpLh~A~~ 157 (664)
T PTZ00322 84 VELCQLAASGDAVGARILLT--GG-ADPN-CRDYDGRTPLHIACANGHVQVVRVLLE--FGADPTLLDKDGKTPLELAEE 157 (664)
T ss_pred HHHHHHHHcCCHHHHHHHHH--CC-CCCC-CcCCCCCcHHHHHHHCCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHH
Confidence 45899999999999999999 66 6666 679999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHc-------CcccccCCCCCCCcHHHHHH
Q 044420 91 AGSIHIAKIMLKK-------NERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 91 ~g~~~iv~~Ll~~-------~~~~~~~~~~~g~tpL~~A~ 123 (545)
.|+.+++++|+++ |++. +..+..|.+|+..+.
T Consensus 158 ~g~~~iv~~Ll~~~~~~~~~ga~~-~~~~~~g~~~~~~~~ 196 (664)
T PTZ00322 158 NGFREVVQLLSRHSQCHFELGANA-KPDSFTGKPPSLEDS 196 (664)
T ss_pred CCcHHHHHHHHhCCCcccccCCCC-CccccCCCCccchhh
Confidence 9999999999998 7776 677888888877654
|
|
| >KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.8e-12 Score=113.79 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=106.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
-..||.-+...|+.+-...||+ .-.++|..|..|.|||..|+..|+.++|+.|++.|+|++..++..+.||||+|+.+
T Consensus 12 ~~~~Lle~i~Kndt~~a~~LLs--~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS 89 (396)
T KOG1710|consen 12 PKSPLLEAIDKNDTEAALALLS--TVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS 89 (396)
T ss_pred hhhHHHHHHccCcHHHHHHHHH--HhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence 4579999999999999999998 56679999999999999999999999999999999999888888999999999999
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCc
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDL 161 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~ 161 (545)
|+.++.++|++.|+.....++-|+|+-..||.-+++
T Consensus 90 Gn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H 125 (396)
T KOG1710|consen 90 GNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHH 125 (396)
T ss_pred CCchHHHHHHhccCccccccchhhhHHHHHHHhcch
Confidence 999999999999999899999999999999888765
|
|
| >KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.1e-11 Score=120.58 Aligned_cols=93 Identities=24% Similarity=0.239 Sum_probs=85.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 128 (545)
.|.-|+..|.+++|+..+. .-.|+...|..|-|+||-|+..||.+||++|++.|+++ |..|.+|+||||+|+..++.
T Consensus 553 LLLDaaLeGEldlVq~~i~--ev~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganV-Na~DSdGWTPLHCAASCNnv 629 (752)
T KOG0515|consen 553 LLLDAALEGELDLVQRIIY--EVTDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANV-NAADSDGWTPLHCAASCNNV 629 (752)
T ss_pred HHHhhhhcchHHHHHHHHH--hhcCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcc-cCccCCCCchhhhhhhcCch
Confidence 3455888999999999998 56788999999999999999999999999999999998 99999999999999999999
Q ss_pred HHHHHHHHcccCCccC
Q 044420 129 DMALYLYDDAKAKDNL 144 (545)
Q Consensus 129 ~iv~~Ll~~~~~~~~~ 144 (545)
.+++.|++.|+.+...
T Consensus 630 ~~ckqLVe~GaavfAs 645 (752)
T KOG0515|consen 630 PMCKQLVESGAAVFAS 645 (752)
T ss_pred HHHHHHHhccceEEee
Confidence 9999999999865433
|
|
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.3e-10 Score=109.79 Aligned_cols=120 Identities=21% Similarity=0.209 Sum_probs=108.2
Q ss_pred hHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC
Q 044420 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG 92 (545)
Q Consensus 13 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 92 (545)
|..|+..+|+-.++.... ++ .++. .++.+..|.||+|+..|+-|+|++++++.....++..|..|+|+||-|+..+
T Consensus 870 il~av~~~D~~klqE~h~--~g-g~ll-~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~ 945 (1004)
T KOG0782|consen 870 ILRAVLSSDLMKLQETHL--NG-GSLL-IQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQR 945 (1004)
T ss_pred HHHHHHhccHHHHHHHHh--cC-CceE-eeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhc
Confidence 778999999888888777 55 5554 6889999999999999999999999997656678999999999999999999
Q ss_pred CHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 93 SIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 93 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
+..+.++|++.|+.+ ..+|..|.||-..|-+.|+.+.+.||-+.
T Consensus 946 ~r~vc~~lvdagasl-~ktd~kg~tp~eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 946 NRAVCQLLVDAGASL-RKTDSKGKTPQERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred chHHHHHHHhcchhh-eecccCCCChHHHHHhcCCchHHHHHhhh
Confidence 999999999999998 89999999999999999999999998754
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.2e-09 Score=112.14 Aligned_cols=101 Identities=25% Similarity=0.304 Sum_probs=88.5
Q ss_pred CChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC-CCcHHHHHHHhCCHHHHH
Q 044420 20 GNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN-GNTAFCFAVAAGSIHIAK 98 (545)
Q Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~TpLh~A~~~g~~~iv~ 98 (545)
|....++-.++ .+. ....+..|..|+|+||+|+..|..+++++|++ +|.+++.+|.. |.||||-|+..|++|++-
T Consensus 28 s~~Nqlk~F~~-k~c-~n~anikD~~GR~alH~~~S~~k~~~l~wLlq--hGidv~vqD~ESG~taLHRaiyyG~idca~ 103 (1267)
T KOG0783|consen 28 SEPNQLKGFSE-KSC-QNLANIKDRYGRTALHIAVSENKNSFLRWLLQ--HGIDVFVQDEESGYTALHRAIYYGNIDCAS 103 (1267)
T ss_pred CChhHHHHHHH-Hhh-hhhhhHHHhhccceeeeeeccchhHHHHHHHh--cCceeeeccccccchHhhHhhhhchHHHHH
Confidence 44445677776 344 44455889999999999999999999999999 89999999965 999999999999999999
Q ss_pred HHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 99 IMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 99 ~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
.||++|+.+ .++|++|.+||..-++-
T Consensus 104 lLL~~g~SL-~i~Dkeglsplq~~~r~ 129 (1267)
T KOG0783|consen 104 LLLSKGRSL-RIKDKEGLSPLQFLSRV 129 (1267)
T ss_pred HHHhcCCce-EEecccCCCHHHHHhhc
Confidence 999999997 89999999999988873
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.77 E-value=6.1e-09 Score=100.62 Aligned_cols=96 Identities=18% Similarity=0.150 Sum_probs=84.7
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
++.++.-++.+|++.|++..++.+.- .|.|++.+|.+.+|+||.|+..|+++++|+|++....-++.+|..|+|||.-
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l--~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd 579 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFAL--QGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD 579 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHH--hcccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence 45567788999999999999988887 7999999999999999999999999999999997654468899999999999
Q ss_pred HHHcCCHHHHHHHHHccc
Q 044420 122 AAVLAQRDMALYLYDDAK 139 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~ 139 (545)
|...+|.+++++|-+...
T Consensus 580 A~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 580 AKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred hHhcCcHHHHHHHHHHhc
Confidence 999999999999987654
|
|
| >KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.8e-09 Score=100.33 Aligned_cols=96 Identities=20% Similarity=0.099 Sum_probs=81.0
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
...++..++.+|++.||+..++.+.- .+ .+.. ..|.+.+|+||.||..|+++++++|++. .+.+++.+|.-|+||
T Consensus 502 ~~~~~~i~~~~aa~~GD~~alrRf~l--~g-~D~~-~~DyD~RTaLHvAAaEG~v~v~kfl~~~-~kv~~~~kDRw~rtP 576 (622)
T KOG0506|consen 502 RENDTVINVMYAAKNGDLSALRRFAL--QG-MDLE-TKDYDDRTALHVAAAEGHVEVVKFLLNA-CKVDPDPKDRWGRTP 576 (622)
T ss_pred ccccchhhhhhhhhcCCHHHHHHHHH--hc-cccc-ccccccchhheeecccCceeHHHHHHHH-HcCCCChhhccCCCc
Confidence 34566778899999999999988877 45 5555 7888999999999999999999999987 788899999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCc
Q 044420 85 FCFAVAAGSIHIAKIMLKKNE 105 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~ 105 (545)
|.-|...+|.+++++|-+...
T Consensus 577 lDdA~~F~h~~v~k~L~~~~~ 597 (622)
T KOG0506|consen 577 LDDAKHFKHKEVVKLLEEAQY 597 (622)
T ss_pred chHhHhcCcHHHHHHHHHHhc
Confidence 999999999999998877643
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.2e-08 Score=60.20 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=14.3
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLT 75 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~ 75 (545)
|+||||+||+.|+.|+|++|++ +|+|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~--~gadvn 29 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLE--HGADVN 29 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHH--cCCCCC
Confidence 4555555555555555555555 444443
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-08 Score=95.84 Aligned_cols=87 Identities=21% Similarity=0.205 Sum_probs=40.9
Q ss_pred hHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhC
Q 044420 13 LQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAG 92 (545)
Q Consensus 13 L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g 92 (545)
||.++...+.+.+...+. ..- +.+...+|..|+||||+|+..|+.+.++.|+. .++++..+|+.|++|||.|+..|
T Consensus 24 lh~~~~~~~~~sl~~el~-~~~-~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~--a~Adv~~kN~~gWs~L~EAv~~g 99 (560)
T KOG0522|consen 24 LHWAVVTTDSDSLEQELL-AKV-SLVIDRRDPPGRTPLHLAVRLGHVEAARILLS--AGADVSIKNNEGWSPLHEAVSTG 99 (560)
T ss_pred cchhhhccchhhHHHHHh-hhh-hceeccccCCCCccHHHHHHhcCHHHHHHHHh--cCCCccccccccccHHHHHHHcC
Confidence 455555444444444433 112 22333444445555555555555555555554 44555555555555555555555
Q ss_pred CHHHHHHHHHc
Q 044420 93 SIHIAKIMLKK 103 (545)
Q Consensus 93 ~~~iv~~Ll~~ 103 (545)
+.+++..++.+
T Consensus 100 ~~q~i~~vlr~ 110 (560)
T KOG0522|consen 100 NEQIITEVLRH 110 (560)
T ss_pred CHHHHHHHHHH
Confidence 55444444443
|
|
| >KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.8e-08 Score=103.61 Aligned_cols=86 Identities=19% Similarity=0.113 Sum_probs=79.2
Q ss_pred hhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccccccc-CCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCC
Q 044420 230 EFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDD-NNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHD 308 (545)
Q Consensus 230 ~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~ 308 (545)
..+..|..|.|+||+|+..|..+++++|+++|.| +..+|. .|+||||-|+.+|+.|++-+|+++|.. +..+|++
T Consensus 44 ~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid-v~vqD~ESG~taLHRaiyyG~idca~lLL~~g~S----L~i~Dke 118 (1267)
T KOG0783|consen 44 LANIKDRYGRTALHIAVSENKNSFLRWLLQHGID-VFVQDEESGYTALHRAIYYGNIDCASLLLSKGRS----LRIKDKE 118 (1267)
T ss_pred hhhHHHhhccceeeeeeccchhHHHHHHHhcCce-eeeccccccchHhhHhhhhchHHHHHHHHhcCCc----eEEeccc
Confidence 3667789999999999999999999999999999 888886 599999999999999999999999987 7789999
Q ss_pred CCChhhhhccCC
Q 044420 309 QNNMLHLAAKSP 320 (545)
Q Consensus 309 G~TpLh~A~~~~ 320 (545)
|.+||.+-++-.
T Consensus 119 glsplq~~~r~~ 130 (1267)
T KOG0783|consen 119 GLSPLQFLSRVL 130 (1267)
T ss_pred CCCHHHHHhhcc
Confidence 999999998843
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.66 E-value=8.2e-08 Score=93.39 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=79.5
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccC-CCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDR-NGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~-~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
-||-.++.|+.|..-.||. -|+++|..+. .|.||||.|++.|+..-+++|+-+|+|+ ...|.+|.||+.+|-..||
T Consensus 136 QLhasvRt~nlet~LRll~--lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~-~a~d~~GmtP~~~AR~~gH 212 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS--LGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADP-GAQDSSGMTPVDYARQGGH 212 (669)
T ss_pred HHHHHhhcccHHHHHHHHH--cccccCCCCcccCCchhHHHHhccchhhhhHHhhccCCC-CCCCCCCCcHHHHHHhcCc
Confidence 4999999999999988888 6999998874 5999999999999999999999999997 8999999999999999999
Q ss_pred HHHHHHHHHcc
Q 044420 128 RDMALYLYDDA 138 (545)
Q Consensus 128 ~~iv~~Ll~~~ 138 (545)
.++.+.|++..
T Consensus 213 ~~laeRl~e~~ 223 (669)
T KOG0818|consen 213 HELAERLVEIQ 223 (669)
T ss_pred hHHHHHHHHHH
Confidence 99999888743
|
|
| >KOG0522 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=5.8e-08 Score=95.73 Aligned_cols=91 Identities=21% Similarity=0.275 Sum_probs=79.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
-|||.++.....+-...++..-....++.+|..|+||||+|+..|+.+.++.|+..|+++ ..+|++|++|||.|+..|+
T Consensus 22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv-~~kN~~gWs~L~EAv~~g~ 100 (560)
T KOG0522|consen 22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADV-SIKNNEGWSPLHEAVSTGN 100 (560)
T ss_pred cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCc-cccccccccHHHHHHHcCC
Confidence 469999999887766665442145678999999999999999999999999999999997 8999999999999999999
Q ss_pred HHHHHHHHHccc
Q 044420 128 RDMALYLYDDAK 139 (545)
Q Consensus 128 ~~iv~~Ll~~~~ 139 (545)
.+++..++.+-.
T Consensus 101 ~q~i~~vlr~~~ 112 (560)
T KOG0522|consen 101 EQIITEVLRHLK 112 (560)
T ss_pred HHHHHHHHHHhH
Confidence 999888887643
|
|
| >KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.4e-08 Score=93.71 Aligned_cols=87 Identities=26% Similarity=0.164 Sum_probs=79.6
Q ss_pred HhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHh
Q 044420 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAA 91 (545)
Q Consensus 12 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~ 91 (545)
-||-.++.|+++..-.||. -| ++.+-.-...|.||||.|++.|+..-+++|+- +|+|++..|.+|.||+.+|-..
T Consensus 136 QLhasvRt~nlet~LRll~--lG-A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~v--YGAD~~a~d~~GmtP~~~AR~~ 210 (669)
T KOG0818|consen 136 QLHSSVRTGNLETCLRLLS--LG-AQANFFHPEKGNTPLHVAAKAGQILQAELLAV--YGADPGAQDSSGMTPVDYARQG 210 (669)
T ss_pred HHHHHhhcccHHHHHHHHH--cc-cccCCCCcccCCchhHHHHhccchhhhhHHhh--ccCCCCCCCCCCCcHHHHHHhc
Confidence 4899999999999999998 67 77775556779999999999999999999998 8999999999999999999999
Q ss_pred CCHHHHHHHHHc
Q 044420 92 GSIHIAKIMLKK 103 (545)
Q Consensus 92 g~~~iv~~Ll~~ 103 (545)
||-++.+.|++.
T Consensus 211 gH~~laeRl~e~ 222 (669)
T KOG0818|consen 211 GHHELAERLVEI 222 (669)
T ss_pred CchHHHHHHHHH
Confidence 999999999875
|
|
| >PF13606 Ank_3: Ankyrin repeat | Back alignment and domain information |
|---|
Probab=98.62 E-value=4.6e-08 Score=58.83 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=12.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 115 NMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 115 g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+||||+|++.|+.|++++|+++|+|
T Consensus 2 G~T~Lh~A~~~g~~e~v~~Ll~~gad 27 (30)
T PF13606_consen 2 GNTPLHLAASNGNIEIVKYLLEHGAD 27 (30)
T ss_pred CCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence 44455555555555555555544444
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.61 E-value=6e-08 Score=60.18 Aligned_cols=31 Identities=35% Similarity=0.396 Sum_probs=18.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccccc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQD 78 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d 78 (545)
|+||||+|+..|+.+++++|++ .|++++.+|
T Consensus 2 G~TpLh~A~~~~~~~~v~~Ll~--~ga~~~~~d 32 (33)
T PF00023_consen 2 GNTPLHYAAQRGHPDIVKLLLK--HGADINARD 32 (33)
T ss_dssp SBBHHHHHHHTTCHHHHHHHHH--TTSCTTCBC
T ss_pred cccHHHHHHHHHHHHHHHHHHH--CcCCCCCCC
Confidence 5566666666666666666666 566665554
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.58 E-value=1.5e-05 Score=83.81 Aligned_cols=86 Identities=15% Similarity=0.165 Sum_probs=72.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC--cccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKP--EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+.--.-.|++.|+.-.|+..++.... -++|..|.-|+++||+|+.+.+.|++++|++++... ..+|.+|+
T Consensus 25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~--------gdALL~aI 96 (822)
T KOG3609|consen 25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE--------GDALLLAI 96 (822)
T ss_pred hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcccc--------chHHHHHH
Confidence 34455679999999999999986444 467889999999999999999999999999987664 34899999
Q ss_pred HcCCHHHHHHHHHccc
Q 044420 124 VLAQRDMALYLYDDAK 139 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~ 139 (545)
+.|..+.|+.++.+..
T Consensus 97 ~~~~v~~VE~ll~~~~ 112 (822)
T KOG3609|consen 97 AVGSVPLVELLLVHFV 112 (822)
T ss_pred HHHHHHHHHHHHhccc
Confidence 9999999999998765
|
|
| >KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.56 E-value=7.8e-07 Score=93.08 Aligned_cols=125 Identities=18% Similarity=0.154 Sum_probs=100.8
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCC-chhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDP-RSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.+.--...|+.+|+...|+..++ +.. ...+.+..|.-|+++||+|..+.+.|++++|++ .+... ..+|.
T Consensus 24 ~~e~~fL~a~E~gd~~~V~k~l~-~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~--~~~~~-------gdALL 93 (822)
T KOG3609|consen 24 EGEKGFLLAHENGDVPLVAKALE-YKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLD--TSSEE-------GDALL 93 (822)
T ss_pred hhhHHHHHHHHcCChHHHHHHHH-hccccccchhccChHhhhceecccccccHHHHHHHhc--Ccccc-------chHHH
Confidence 34555678999999999999999 433 024446889999999999999999999999999 45444 35899
Q ss_pred HHHHhCCHHHHHHHHHcCccc---------ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCc
Q 044420 87 FAVAAGSIHIAKIMLKKNERL---------LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKD 142 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~---------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~ 142 (545)
+|+..|..++|+.++.+-... ....-..+.|||.+||..++.||++.|+++|+.+.
T Consensus 94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~ 158 (822)
T KOG3609|consen 94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIP 158 (822)
T ss_pred HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCC
Confidence 999999999999999864321 11233457899999999999999999999998743
|
|
| >PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=59.01 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=18.5
Q ss_pred CCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 271 NNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 271 ~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
+|+||||+|+.+++.+++++|+++|++
T Consensus 1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~ 27 (33)
T PF00023_consen 1 DGNTPLHYAAQRGHPDIVKLLLKHGAD 27 (33)
T ss_dssp TSBBHHHHHHHTTCHHHHHHHHHTTSC
T ss_pred CcccHHHHHHHHHHHHHHHHHHHCcCC
Confidence 466677777777777777777776666
|
Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A .... |
| >KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.1e-07 Score=91.99 Aligned_cols=94 Identities=29% Similarity=0.252 Sum_probs=85.7
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
..+.++.||+|++.|+-|+|+++++ ..| ..+....|.+|+|+||.|+..++..+.++|++ .|+.+...|..|.||-
T Consensus 896 ~~~~~sllh~a~~tg~~eivkyild-h~p-~elld~~de~get~lhkaa~~~~r~vc~~lvd--agasl~ktd~kg~tp~ 971 (1004)
T KOG0782|consen 896 GPDHCSLLHYAAKTGNGEIVKYILD-HGP-SELLDMADETGETALHKAACQRNRAVCQLLVD--AGASLRKTDSKGKTPQ 971 (1004)
T ss_pred CcchhhHHHHHHhcCChHHHHHHHh-cCC-HHHHHHHhhhhhHHHHHHHHhcchHHHHHHHh--cchhheecccCCCChH
Confidence 4567899999999999999999999 455 66666788999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHc
Q 044420 86 CFAVAAGSIHIAKIMLKK 103 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~ 103 (545)
.-|-+.|+.++..+|-++
T Consensus 972 eraqqa~d~dlaayle~r 989 (1004)
T KOG0782|consen 972 ERAQQAGDPDLAAYLESR 989 (1004)
T ss_pred HHHHhcCCchHHHHHhhh
Confidence 999999999999998764
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.43 E-value=5.6e-07 Score=89.38 Aligned_cols=91 Identities=19% Similarity=0.195 Sum_probs=77.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccc--cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLT--LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA 126 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 126 (545)
-|.-|+...++..+-+||.+.....+| ..+.+|+|+||+||+.|++.+.++|+-+|+|+ ..+|..|+|+|.||-+.|
T Consensus 627 qLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv-~~rda~g~t~l~yar~a~ 705 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDV-MARDAHGRTALFYARQAG 705 (749)
T ss_pred HHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccc-eecccCCchhhhhHhhcc
Confidence 356788888888999999843333344 34566899999999999999999999999997 899999999999999999
Q ss_pred CHHHHHHHHHcccC
Q 044420 127 QRDMALYLYDDAKA 140 (545)
Q Consensus 127 ~~~iv~~Ll~~~~~ 140 (545)
..|++..|+++|..
T Consensus 706 sqec~d~llq~gcp 719 (749)
T KOG0705|consen 706 SQECIDVLLQYGCP 719 (749)
T ss_pred cHHHHHHHHHcCCC
Confidence 99999999999975
|
|
| >KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.35 E-value=1e-06 Score=87.65 Aligned_cols=91 Identities=25% Similarity=0.218 Sum_probs=78.4
Q ss_pred HhHHHHHcCChHHHHHhhcCCCCc-hhhh-hccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHH
Q 044420 12 PLQKAALKGNWPTAKHLLGNEDPR-SILC-AGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAV 89 (545)
Q Consensus 12 ~L~~Aa~~g~~~~v~~Ll~~~~~~-~~~~-~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 89 (545)
-|..|+...|+..+..||. ++. ..++ ...+.+|.|+||+||+.|++.+.++|+= +|+|+-.+|..|+|+|.||-
T Consensus 627 qLl~A~~~~Dl~t~~lLLA--hg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiW--yg~dv~~rda~g~t~l~yar 702 (749)
T KOG0705|consen 627 QLLRAVAAEDLQTAILLLA--HGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIW--YGVDVMARDAHGRTALFYAR 702 (749)
T ss_pred HHHHHHHHHHHHHHHHHHh--ccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHH--hCccceecccCCchhhhhHh
Confidence 3677888899999999998 441 2333 2345677999999999999999999998 89999999999999999999
Q ss_pred HhCCHHHHHHHHHcCcc
Q 044420 90 AAGSIHIAKIMLKKNER 106 (545)
Q Consensus 90 ~~g~~~iv~~Ll~~~~~ 106 (545)
+.|..|++..|+.+|..
T Consensus 703 ~a~sqec~d~llq~gcp 719 (749)
T KOG0705|consen 703 QAGSQECIDVLLQYGCP 719 (749)
T ss_pred hcccHHHHHHHHHcCCC
Confidence 99999999999999864
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.6e-06 Score=92.79 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=90.6
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
.....|++-||.++..++.-.++.+++ ..+ ... ...|.+|.-.+|. |..++.+.+-+|+.. .+..++.+|..|+|
T Consensus 569 ~~~~r~~lllhL~a~~lyawLie~~~e-~~~-~~~-~eld~d~qgV~hf-ca~lg~ewA~ll~~~-~~~ai~i~D~~G~t 643 (975)
T KOG0520|consen 569 SVNFRDMLLLHLLAELLYAWLIEKVIE-WAG-SGD-LELDRDGQGVIHF-CAALGYEWAFLPISA-DGVAIDIRDRNGWT 643 (975)
T ss_pred cCCCcchHHHHHHHHHhHHHHHHHHhc-ccc-cCc-hhhcccCCChhhH-hhhcCCceeEEEEee-cccccccccCCCCc
Confidence 455677888888888888888888887 323 222 2456666677777 555666666666654 67778888888888
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccc-----cCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLL-----TMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
|||+|+..|+..++..|++.|++-. ......|.|+-..|..+|+..+.-+|-+.
T Consensus 644 pL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~ 702 (975)
T KOG0520|consen 644 PLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK 702 (975)
T ss_pred ccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence 8888888888888888887766432 22334577788888888888877777654
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.2e-06 Score=92.36 Aligned_cols=87 Identities=32% Similarity=0.405 Sum_probs=58.2
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
.|.|+||.|+..|..-++++|++ +|+++|..|..|+||||.+...|+...+..|+++|++. +..+.+|.+||++|..
T Consensus 655 ~~~s~lh~a~~~~~~~~~e~ll~--~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~-~a~~~~~~~~l~~a~~ 731 (785)
T KOG0521|consen 655 IGCSLLHVAVGTGDSGAVELLLQ--NGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADP-NAFDPDGKLPLDIAME 731 (785)
T ss_pred cccchhhhhhccchHHHHHHHHh--cCCcchhhhccCCCcchhhhhhcccchhhhhccccccc-cccCccCcchhhHHhh
Confidence 45677777777777777777776 66777777777777777777777777777777777664 6667777777777665
Q ss_pred cCCHHHHHHH
Q 044420 125 LAQRDMALYL 134 (545)
Q Consensus 125 ~g~~~iv~~L 134 (545)
..+.+++-++
T Consensus 732 ~~~~d~~~l~ 741 (785)
T KOG0521|consen 732 AANADIVLLL 741 (785)
T ss_pred hccccHHHHH
Confidence 5554444333
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=1e-05 Score=76.67 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=44.6
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
-|..||+.|+.+.|++|++ .|.++|..|....+||.+|+..||.++|++|+++|+-- ..-..+|.-.+
T Consensus 39 elceacR~GD~d~v~~LVe--tgvnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC-~rdtf~G~RC~ 106 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVE--TGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAIC-SRDTFDGDRCH 106 (516)
T ss_pred HHHHHhhcccHHHHHHHHH--hCCCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcc-cccccCcchhh
Confidence 4667777777777777777 67777777777777777777777777777777777642 22233444443
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=8e-06 Score=70.17 Aligned_cols=70 Identities=14% Similarity=0.223 Sum_probs=59.0
Q ss_pred CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 71 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+.++|.+|..|+|||++|+..|+.+.+.+|+.+|+..+...|..|.+++.+|-+.|+.++++.|.+...+
T Consensus 2 e~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 2 EGNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred CCCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 4578889999999999999999999999999999433488899999999999999999999988877544
|
|
| >KOG0511 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.1e-05 Score=74.58 Aligned_cols=73 Identities=15% Similarity=0.321 Sum_probs=52.5
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
-|..||+.|+.+.|+.|++.|.++ |..|+...+||.+|+..||.++|++|+++|+- -..+...+.--|+++.+
T Consensus 39 elceacR~GD~d~v~~LVetgvnV-N~vD~fD~spL~lAsLcGHe~vvklLLenGAi-C~rdtf~G~RC~YgaLn 111 (516)
T KOG0511|consen 39 ELCEACRAGDVDRVRYLVETGVNV-NAVDRFDSSPLYLASLCGHEDVVKLLLENGAI-CSRDTFDGDRCHYGALN 111 (516)
T ss_pred HHHHHhhcccHHHHHHHHHhCCCc-chhhcccccHHHHHHHcCcHHHHHHHHHcCCc-ccccccCcchhhhhhhh
Confidence 467788888888888888888776 77787788888888888888888888888774 33444444555555554
|
|
| >KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.9e-06 Score=90.57 Aligned_cols=88 Identities=24% Similarity=0.245 Sum_probs=80.8
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhh
Q 044420 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHL 315 (545)
Q Consensus 236 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~ 315 (545)
..|.|+||.|+..|..-++++|+++|++ ++.+|..|+||+|.+...|+...+..|+++|++ .+..|.+|.+||++
T Consensus 654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~-vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~----~~a~~~~~~~~l~~ 728 (785)
T KOG0521|consen 654 CIGCSLLHVAVGTGDSGAVELLLQNGAD-VNALDSKGRTPLHHATASGHTSIACLLLKRGAD----PNAFDPDGKLPLDI 728 (785)
T ss_pred hcccchhhhhhccchHHHHHHHHhcCCc-chhhhccCCCcchhhhhhcccchhhhhcccccc----ccccCccCcchhhH
Confidence 4579999999999999999999999999 999999999999999999999999999999999 67899999999999
Q ss_pred hccCCCCCccccc
Q 044420 316 AAKSPHPSRVSIV 328 (545)
Q Consensus 316 A~~~~~~~~~~~L 328 (545)
|....+.+++-++
T Consensus 729 a~~~~~~d~~~l~ 741 (785)
T KOG0521|consen 729 AMEAANADIVLLL 741 (785)
T ss_pred HhhhccccHHHHH
Confidence 9887666665443
|
|
| >KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown] | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.7e-06 Score=90.09 Aligned_cols=137 Identities=18% Similarity=0.135 Sum_probs=106.1
Q ss_pred cccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHH
Q 044420 175 LAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFL 254 (545)
Q Consensus 175 ~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v 254 (545)
......-.|++-+|+++..++. .|++.+++.........|.+|.-.+|. |..++++.+
T Consensus 566 ~~~~~~~r~~lllhL~a~~lya---------------------wLie~~~e~~~~~~~eld~d~qgV~hf-ca~lg~ewA 623 (975)
T KOG0520|consen 566 LSSSVNFRDMLLLHLLAELLYA---------------------WLIEKVIEWAGSGDLELDRDGQGVIHF-CAALGYEWA 623 (975)
T ss_pred ccccCCCcchHHHHHHHHHhHH---------------------HHHHHHhcccccCchhhcccCCChhhH-hhhcCCcee
Confidence 3456677899999999988743 456666665224444556677777777 666777777
Q ss_pred HHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhh--hcccCCCCChhhhhccCCCCCccccccchh
Q 044420 255 AELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMA--TFKDHDQNNMLHLAAKSPHPSRVSIVSGAA 332 (545)
Q Consensus 255 ~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~--n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~ 332 (545)
-+++......++.+|..|+||||+|+..|+..++..|++.|+++..+. +..+-.|.|+-.+|..+|+..+..+|.+.+
T Consensus 624 ~ll~~~~~~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~~ 703 (975)
T KOG0520|consen 624 FLPISADGVAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEKA 703 (975)
T ss_pred EEEEeecccccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhhH
Confidence 777766555599999999999999999999999999999988876533 334556999999999999999999887765
Q ss_pred H
Q 044420 333 L 333 (545)
Q Consensus 333 ~ 333 (545)
+
T Consensus 704 L 704 (975)
T KOG0520|consen 704 L 704 (975)
T ss_pred H
Confidence 4
|
|
| >KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.1e-05 Score=65.34 Aligned_cols=65 Identities=17% Similarity=0.050 Sum_probs=61.0
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 044420 40 AGIAKGYETLLHLAAGARQTGFVEELLKLMKP-EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106 (545)
Q Consensus 40 ~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 106 (545)
+.+|..|+|||+.|+..|+.+.+.+|+. +| +.+...|..|.+++.+|-+.|+.++|+.|-+...+
T Consensus 6 n~rD~fgWTalmcaa~eg~~eavsyllg--rg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~e 71 (223)
T KOG2384|consen 6 NARDAFGWTALMCAAMEGSNEAVSYLLG--RGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRE 71 (223)
T ss_pred cchhhhcchHHHHHhhhcchhHHHHHhc--cCcccccccccccchHHHHHHhcChHHHHHHHHHHhcc
Confidence 3789999999999999999999999999 68 99999999999999999999999999999997554
|
|
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0034 Score=36.44 Aligned_cols=25 Identities=28% Similarity=0.606 Sum_probs=11.8
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCc
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNE 105 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~ 105 (545)
|.||+|+|+..++.++++.|++.+.
T Consensus 2 ~~~~l~~~~~~~~~~~~~~ll~~~~ 26 (30)
T smart00248 2 GRTPLHLAAENGNLEVVKLLLDKGA 26 (30)
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 3444444444444444444444443
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >smart00248 ANK ankyrin repeats | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0042 Score=36.03 Aligned_cols=28 Identities=39% Similarity=0.376 Sum_probs=20.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDL 74 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~ 74 (545)
+|.||+|+|+..++.++++.|++ .+.++
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~ll~--~~~~~ 28 (30)
T smart00248 1 DGRTPLHLAAENGNLEVVKLLLD--KGADI 28 (30)
T ss_pred CCCCHHHHHHHcCCHHHHHHHHH--cCCCC
Confidence 36788888888888888888887 45544
|
Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. |
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.019 Score=57.12 Aligned_cols=62 Identities=21% Similarity=0.233 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCcccc------cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 59 TGFVEELLKLMKPEDLT------LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 59 ~~~v~~Ll~~~~~~~~~------~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
...+++|.+ ++.+.| ..+.---|+||+|+.+|..++|.+||+.|+|. ..+|..|.||..++.
T Consensus 404 p~~ie~lke--n~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp-~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 404 PDSIEALKE--NLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDP-STKDGAGRTPYSLSA 471 (591)
T ss_pred hhHHHHHHh--cCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCc-hhcccCCCCcccccc
Confidence 556777777 454443 23334568888888888888888888888874 788888888888776
|
|
| >KOG2505 consensus Ankyrin repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.02 Score=57.00 Aligned_cols=41 Identities=20% Similarity=0.190 Sum_probs=22.5
Q ss_pred ChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 239 SHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 239 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
.|+||+|+..|..++|.++|+.|.| +..+|..|+||..++.
T Consensus 431 sT~LH~aa~qg~~k~v~~~Leeg~D-p~~kd~~Grtpy~ls~ 471 (591)
T KOG2505|consen 431 STFLHYAAAQGARKCVKYFLEEGCD-PSTKDGAGRTPYSLSA 471 (591)
T ss_pred chHHHHHHhcchHHHHHHHHHhcCC-chhcccCCCCcccccc
Confidence 4555555555555555555555555 4555555555555544
|
|
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.5 Score=42.55 Aligned_cols=114 Identities=16% Similarity=0.155 Sum_probs=81.4
Q ss_pred HhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC----CCcHHHH
Q 044420 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN----GNTAFCF 87 (545)
Q Consensus 12 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~----g~TpLh~ 87 (545)
.|-.|+..-+.+.+..++. +. . .-.++|-+|..++..+++.+|+.. -....+|.- +.--+-+
T Consensus 156 sledAV~AsN~~~i~~~Vt--dK-k--------dA~~Am~~si~~~K~dva~~lls~---f~ft~~dv~~~~~~~ydieY 221 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVT--DK-K--------DAHQAMWLSIGNAKEDVALYLLSK---FNFTKQDVASMEKELYDIEY 221 (284)
T ss_pred cHHHHHhhcCHHHHHHHhc--ch-H--------HHHHHHHHHhcccHHHHHHHHHhh---cceecchhhhcCcchhhHHH
Confidence 4566777777777777766 22 1 234788999999999999999983 233333322 2223444
Q ss_pred HHH--hCCHHHHHHHHHcCcccc---cCCCCCCCcHHHHHHHcCCHHHHHHHHHccc
Q 044420 88 AVA--AGSIHIAKIMLKKNERLL---TMRGGENMTPLYMAAVLAQRDMALYLYDDAK 139 (545)
Q Consensus 88 A~~--~g~~~iv~~Ll~~~~~~~---~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 139 (545)
+.. +.+..++++.+++|.--+ ..+-+.|.|-|.-|+..++.+++..|+++|+
T Consensus 222 ~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA 278 (284)
T PF06128_consen 222 LLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGA 278 (284)
T ss_pred HHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCc
Confidence 443 346789999999985322 3566789999999999999999999999998
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC | Back alignment and domain information |
|---|
Probab=91.49 E-value=1.5 Score=39.64 Aligned_cols=46 Identities=20% Similarity=0.272 Sum_probs=31.5
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
.|--|+...+.+-+.-++....+ -.+++-+|+.++..+++.+|+++
T Consensus 156 sledAV~AsN~~~i~~~VtdKkd--------A~~Am~~si~~~K~dva~~lls~ 201 (284)
T PF06128_consen 156 SLEDAVKASNYEEISNLVTDKKD--------AHQAMWLSIGNAKEDVALYLLSK 201 (284)
T ss_pred cHHHHHhhcCHHHHHHHhcchHH--------HHHHHHHHhcccHHHHHHHHHhh
Confidence 45567766666666655544333 24688888888888888888875
|
The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol []. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.5 Score=38.37 Aligned_cols=49 Identities=14% Similarity=-0.016 Sum_probs=34.4
Q ss_pred HhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHH
Q 044420 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLK 67 (545)
Q Consensus 12 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~ 67 (545)
.|..|++.+-+.++++.-+ .- .. .-...++..-.||+..+.|+|++.-.
T Consensus 49 Ll~HAVk~nmL~ILqkyke--~L---~~--~~~~~q~LFElAC~~qkydiV~WI~q 97 (192)
T PF03158_consen 49 LLYHAVKYNMLSILQKYKE--DL---EN--ERYLNQELFELACEEQKYDIVKWIGQ 97 (192)
T ss_pred HHHHHHHcCcHHHHHHHHH--Hh---hc--chhHHHHHHHHHHHHccccHHHHHhh
Confidence 3567888888888887755 11 11 12346778888999999999998855
|
These proteins may be involved in promoting survival of infected macrophages []. |
| >PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.6 Score=37.02 Aligned_cols=47 Identities=23% Similarity=0.227 Sum_probs=40.5
Q ss_pred hHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHh
Q 044420 240 HLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYE 293 (545)
Q Consensus 240 tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~ 293 (545)
.-|..|+..|-...+...+++|.+ ++ .++|..|+.+++.+++.+++.
T Consensus 145 ~hl~~a~~kgll~F~letlkygg~-~~------~~vls~Av~ynhRkIL~yfi~ 191 (192)
T PF03158_consen 145 QHLEKAAAKGLLPFVLETLKYGGN-VD------IIVLSQAVKYNHRKILDYFIR 191 (192)
T ss_pred HHHHHHHHCCCHHHHHHHHHcCCc-cc------HHHHHHHHHhhHHHHHHHhhc
Confidence 346789999999999999999998 43 289999999999999998864
|
These proteins may be involved in promoting survival of infected macrophages []. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=89.25 E-value=0.65 Score=34.76 Aligned_cols=46 Identities=26% Similarity=0.365 Sum_probs=24.1
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
.+..|+..|+.|+++.+++.+ .. + ...+..|+...+.+++++|+++
T Consensus 9 tl~~Ai~GGN~eII~~c~~~~-~~-~------~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 9 TLEYAIIGGNFEIINICLKKN-KP-D------NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHhCCCHHHHHHHHHHh-cc-H------HHHHHHHHHHhhHHHHHHHHHh
Confidence 445555566666666555433 11 0 2345555555556666665554
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
| >PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain | Back alignment and domain information |
|---|
Probab=88.96 E-value=0.92 Score=33.96 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=40.6
Q ss_pred ChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 239 SHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 239 ~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
..-+..|+..|+.|+++.+++.+.. + ...+..|+...+.+++++|++.
T Consensus 7 ~~tl~~Ai~GGN~eII~~c~~~~~~-----~---~~~l~~AI~~H~n~i~~~l~~~ 54 (76)
T PF11929_consen 7 KKTLEYAIIGGNFEIINICLKKNKP-----D---NDCLEYAIKSHNNEIADWLIEN 54 (76)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhcc-----H---HHHHHHHHHHhhHHHHHHHHHh
Confidence 4567899999999999999976522 1 4579999999999999999986
|
These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ]. |
| >cd07920 Pumilio Pumilio-family RNA binding domain | Back alignment and domain information |
|---|
Probab=87.75 E-value=26 Score=34.44 Aligned_cols=129 Identities=8% Similarity=-0.058 Sum_probs=78.9
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc-cccCCCCc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLT-LQDRNGNT 83 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~-~~d~~g~T 83 (545)
.+.+|.-.|..+.+.++.+....+++.-.| ....-..|..|+-.+....+.+..+....+++...|.-.. ..|..|.-
T Consensus 17 ~~~~gsr~lQ~~l~~~~~~~~~~i~~~l~~-~~~~l~~~~~g~~vvq~~l~~~~~~~~~~i~~~~~~~~~~l~~~~~g~~ 95 (322)
T cd07920 17 KDQHGSRFLQQKLEEATPEEKELIFDEILP-HVVELMVDPFGNYVIQKLFEHGTEEQRLQLLEKILGHVVRLSLDMYGCR 95 (322)
T ss_pred CCchhhHHHHHHhccCCHHHHHHHHHHHHH-hHHHHhcCccccHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcccchhHH
Confidence 345567777788888888877777772223 3344467788888888888888777666666643222222 45666766
Q ss_pred HHHHHHHhCCHHHHHHHHHc----CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD 136 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~----~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 136 (545)
.+--+...+..+-...+++. -.. -..|..|...+..+...+..+..+.+++
T Consensus 96 vlqkll~~~~~~~~~~i~~~l~~~~~~--L~~d~~gn~Vvq~~l~~~~~~~~~~i~~ 150 (322)
T cd07920 96 VIQKLLESISEEQISLLVKELRGHVVE--LVKDQNGNHVIQKCIEKFPPEDLQFIID 150 (322)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHCHHH--HhhcccccHHHHHHHHhCCHHHHHHHHH
Confidence 66666666654433333332 222 2466777777777776666665555543
|
Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon |
| >COG2322 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.02 E-value=30 Score=29.87 Aligned_cols=12 Identities=8% Similarity=-0.199 Sum_probs=7.5
Q ss_pred hccccccccccc
Q 044420 533 YHARTITRIALT 544 (545)
Q Consensus 533 ~~~~~~~~~~~~ 544 (545)
-+++.++||+++
T Consensus 140 a~~~~~~rHrki 151 (177)
T COG2322 140 AWKGLYERHRKI 151 (177)
T ss_pred Hhcchhhhhhee
Confidence 455667777653
|
|
| >PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues | Back alignment and domain information |
|---|
Probab=80.78 E-value=31 Score=31.54 Aligned_cols=22 Identities=14% Similarity=0.089 Sum_probs=15.2
Q ss_pred ccccccCCCCCChhhhhHhhhhh
Q 044420 352 TFREMKNSEGKTPRELFSIEHSS 374 (545)
Q Consensus 352 ~~~~~~n~~G~Tpl~~a~~~~~~ 374 (545)
...++++--| ||-++|.+--++
T Consensus 44 ~G~tA~~lfG-~P~~~a~eli~~ 65 (206)
T PF06570_consen 44 KGKTARQLFG-DPKEYADELIKP 65 (206)
T ss_pred CCCcHHHHcC-CHHHHHHHHhcc
Confidence 3456778888 888888765443
|
However, these proteins contain predicted integral membrane proteins (with several transmembrane segments). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 62.5 bits (153), Expect = 1e-10
Identities = 64/330 (19%), Positives = 102/330 (30%), Gaps = 64/330 (19%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
PL A+ G+ P K+LL A ET LH+AA A T + LL+
Sbjct: 17 PLHVASFMGHLPIVKNLLQRG-------ASPNVSNVKVETPLHMAARAGHTEVAKYLLQ- 68
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ + ++ T A G ++ K++L+ N TPL++AA
Sbjct: 69 -NKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL-----ATTAGHTPLHIAAR 122
Query: 125 LAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV-ARD 180
+ L L + + L +LL + A
Sbjct: 123 EGHVETVLALLEKEASQACMTK---KGFTPLHVAAKYG--KVRVAELLLER-DAHPNAAG 176
Query: 181 GNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRK 237
N T LHV A + + L +VK L + +T L
Sbjct: 177 KNGLTPLHV--------AVHH-N------N--LDIVKLLLPRGGSPHSPAWNGYTPL--- 216
Query: 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297
H+ AA+ E L+ + + H+A HA + L+
Sbjct: 217 --HI---AAKQNQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN 270
Query: 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSI 327
L + LHL A+ H +
Sbjct: 271 GNL----GNKSGLTPLHLVAQEGHVPVADV 296
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 64/326 (19%), Positives = 108/326 (33%), Gaps = 68/326 (20%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
PL AA +G+ T LL E A K T LH+AA + E LL+
Sbjct: 116 PLHIAAREGHVETVLALLEKE-------ASQACMTKKGFTPLHVAAKYGKVRVAELLLE- 167
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ +NG T AV ++ I K++L + + TPL++AA
Sbjct: 168 -RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSP-----AWNGYTPLHIAAK 221
Query: 125 LAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV-A 178
Q ++A L +A++ +TP L H + LL
Sbjct: 222 QNQVEVARSLLQYGGSANAESVQGVTP-----LHLAAQEG--HAEMVALLLSK-QANGNL 273
Query: 179 RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLI 235
+ + T LH ++ H + + L + + +T L
Sbjct: 274 GNKSGLTPLH--------LVAQEG-------H--VPVADVLIKHGVMVDATTRMGYTPLH 316
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
A+ GN + L + + + V+ S H A H +I L+ + G
Sbjct: 317 V--------ASHYGNIK-LVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG 367
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPH 321
+ D L +A + +
Sbjct: 368 ASPNE----VSSDGTTPLAIAKRLGY 389
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-09
Identities = 73/326 (22%), Positives = 123/326 (37%), Gaps = 68/326 (20%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
PL AA G+ AK+LL N+ A + AK +T LH AA T V+ LL+
Sbjct: 50 PLHMAARAGHTEVAKYLLQNK-------AKVNAKAKDDQTPLHCAARIGHTNMVKLLLE- 101
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ L G+T A G + +L+K + TPL++AA
Sbjct: 102 -NNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-----MTKKGFTPLHVAAK 155
Query: 125 LAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV-A 178
+ +A L + +A K+ LTP L +L D+ LL G + +
Sbjct: 156 YGKVRVAELLLERDAHPNAAGKNGLTP-----LHVAVHHNNL-DIVKLLLP--RGGSPHS 207
Query: 179 RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLI 235
N T LH +A A +NQ +++ +SL + T L
Sbjct: 208 PAWNGYTPLH-IA------AKQNQ----------VEVARSLLQYGGSANAESVQGVTPL- 249
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
HL AA+ G+ E +A L+ + + + + + H+ H + +++ + G
Sbjct: 250 ----HL---AAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHG 301
Query: 296 FTKELMATFKDHDQNNMLHLAAKSPH 321
+ LH+A+ +
Sbjct: 302 VMVDA----TTRMGYTPLHVASHYGN 323
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 3e-09
Identities = 60/291 (20%), Positives = 98/291 (33%), Gaps = 62/291 (21%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
PL AA G A+ LL + A K T LH+A V+ LL
Sbjct: 149 PLHVAAKYGKVRVAELLLERD-------AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP- 200
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ NG T A + +A+ +L+ N + +TPL++AA
Sbjct: 201 -RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-----ESVQGVTPLHLAAQ 254
Query: 125 LAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179
+M L + K LTP L H +L H + A
Sbjct: 255 EGHAEMVALLLSKQANGNLGNKSGLTP-----LHLVAQEG--HVPVADVLIKHGVMVDAT 307
Query: 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIR 236
T LHV AS G + ++LVK L + + + ++ L
Sbjct: 308 TRMGYTPLHV--------ASHY-G------N--IKLVKFLLQHQADVNAKTKLGYSPL-- 348
Query: 237 KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287
H AA+ G+ + + L+ +E+ + + IA + ++
Sbjct: 349 ---HQ---AAQQGHTD-IVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 392
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 7e-09
Identities = 51/287 (17%), Positives = 91/287 (31%), Gaps = 56/287 (19%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
T LH+A+ V+ LL+ + + + T A AG +AK +L+
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQ--RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 72
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCI 157
N + ++ TPL+ AA + +M L + + TP L
Sbjct: 73 VNA-----KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP-----LHIAAR 122
Query: 158 STDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVK 217
+ + L + T LH A++ G +++ +
Sbjct: 123 EGHV-ETV-LALLEKEASQACMTKKGFTPLH--------VAAKY-G------K--VRVAE 163
Query: 218 SLWEA---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRS 274
L E + T L H+ A N + + +L+ H N +
Sbjct: 164 LLLERDAHPNAAGKNGLTPL-----HV---AVHHNNLD-IVKLLLPRGGSPHSPAWNGYT 214
Query: 275 IFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321
HIA + + + G + + LHLAA+ H
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANA----ESVQGVTPLHLAAQEGH 257
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 1e-06
Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 19/145 (13%)
Query: 12 PLQKAALKGNWPTAKHLLGN------EDPRSILCAGIAKGYETLLHLAAGARQTGFVEEL 65
PL A +G+ P A L+ + + T LH+A+ V+ L
Sbjct: 281 PLHLVAQEGHVPVADVLIKHGVMVDATT----------RMGYTPLHVASHYGNIKLVKFL 330
Query: 66 LKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125
L+ D+ + + G + A G I ++LK + TPL +A L
Sbjct: 331 LQ--HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNG-ASPNEVSSDGTTPLAIAKRL 387
Query: 126 AQRDMALYLYDDAKAKDNLTPEDQN 150
+ L + D++
Sbjct: 388 GYISVTDVLKVVTDETSFVLVSDKH 412
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 56.8 bits (138), Expect = 7e-09
Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 63/287 (21%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
+H+AA QT V L++ T+Q+R G TA A G + AK +
Sbjct: 21 MEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEV 78
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162
+ P+++A + + D+ + L + + P
Sbjct: 79 HSLW-------HGQKPIHLAVMANKTDLVVALV-EGAKERGQMP--------------ES 116
Query: 163 DLALKLLEDHSGLAV-ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWE 221
L + + + + +TALH + L+++K L +
Sbjct: 117 LLNECDEREVNEIGSHVKHCKGQTALH--------WCVGLG-------PEYLEMIKILVQ 161
Query: 222 A---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDL----VHELDDNNRS 274
+D ++ T P L A E N E L ++ + P + + S
Sbjct: 162 LGASPTAKDKADET-----P---LMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNS 213
Query: 275 IFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321
H A+L ++ E+G + +D++ L+L+ ++
Sbjct: 214 HLHWAILINWEDVAMRFVEMGIDVNM----EDNEHTVPLYLSVRAAM 256
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 8e-08
Identities = 42/331 (12%), Positives = 87/331 (26%), Gaps = 72/331 (21%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
+ AA KG + L+ + T LHLA + L
Sbjct: 23 KIHVAARKGQTDEVRRLIETG-------VSPTIQNRFGCTALHLACKFGCVDTAKYLAS- 74
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128
E + +G AV A + +++ + P + +R
Sbjct: 75 -VGEVHS--LWHGQKPIHLAVMANKTDLVVALVEGAKE-------RGQMPESLLNECDER 124
Query: 129 DMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV-ARDGNYETAL 187
++ + K + Q AL + + +K+L G + A+D ET L
Sbjct: 125 EVNEI---GSHVKHC---KGQTALHWCVGLGPEYLEMIKILVQL-GASPTAKDKADETPL 177
Query: 188 HVLARKPSAFASRN------QGLLTRLM--HSALQLVKSLWEAILKRDDSEFTDLIRKPS 239
A ++ + S + + + L
Sbjct: 178 M--------RAMEFRNREALDLMMDTVPSKSSL---------RLDYANKQGNSHL----- 215
Query: 240 HLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299
H A + + + D V+ D+ + +++V + + +
Sbjct: 216 HW---AILINWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFL 271
Query: 300 LMAT---------FKDHDQNNMLHLAAKSPH 321
+ A + + AA
Sbjct: 272 IQACPYHNGTTVLPDRVVWLDFVPAAADPSK 302
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364 | Back alignment and structure |
|---|
Score = 53.3 bits (129), Expect = 9e-08
Identities = 37/331 (11%), Positives = 78/331 (23%), Gaps = 80/331 (24%)
Query: 12 PLQKAALKGNWPTAKHLL--GNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
P+ A + L+ E + L + E
Sbjct: 87 PIHLAVMANKTDLVVALVEGAKERGQ------------MPESLLNECDEREVNE------ 128
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIH--IAKIMLKK----NERLLTMRGGENMTPLYMAA 123
++ G TA + V G + + KI+++ + + TPL A
Sbjct: 129 --IGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTA-----KDKADETPLMRAM 181
Query: 124 VLAQRDMALYLYD----------DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS 173
R+ + D D K + L + + + +
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANKQGNSH-----LHWAILIN--WEDVAMRFVEM- 233
Query: 174 GLAV-ARDGNYETALHVLARKPSAFASRN------QGLLTRLMHSALQLVKSLWEA-ILK 225
G+ V D + L+ + R + LL + +Q +L
Sbjct: 234 GIDVNMEDNEHTVPLY--------LSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLP 285
Query: 226 RDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285
AA+ E + +L+ D V +
Sbjct: 286 DRVVWLD-----FVPA---AADPSKQE-VLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAP 336
Query: 286 NIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316
+ + + + ++
Sbjct: 337 AVKRMKLAPSAPVRT----RSRSRARSSAVS 363
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 2e-08
Identities = 52/300 (17%), Positives = 97/300 (32%), Gaps = 64/300 (21%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
T LHLAAG + V+ LL+ D+ +D+ G A + G + +++LK
Sbjct: 59 STPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTP----------- 146
N TPL+ AA + ++ L +
Sbjct: 117 VNA-----MDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRE 171
Query: 147 -----EDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201
++L DL + K L + + ++ETALH A +
Sbjct: 172 RLTYEFKGHSLLQAAREADLAKVK-KTLALE-IINFKQPQSHETALH--------CAVAS 221
Query: 202 QGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELI 258
Q+ + L + +++ T L H+ AAE + + + E++
Sbjct: 222 LH------PKRKQVAELLLRKGANVNEKNKDFMTPL-----HV---AAERAHND-VMEVL 266
Query: 259 CSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318
+ ++ LD ++ H A L H L+ G + + +
Sbjct: 267 HKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI----ISLQGFTAAQMGNE 322
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 48/325 (14%), Positives = 93/325 (28%), Gaps = 98/325 (30%)
Query: 24 TAKHLL---GNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE--DLTLQD 78
+A L + LL A +G E+L+ L+ P + D
Sbjct: 6 SALDLADPSAKAVLTGE------YKKDELLEAAR----SGNEEKLMALLTPLNVNCHASD 55
Query: 79 RNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQRDMALYL 134
+T A + I +++L+ + + G + PL+ A ++ L
Sbjct: 56 GRKSTPLHLAAGYNRVRIVQLLLQHGADVHAK--DKGG---LVPLHNACSYGHYEVTELL 110
Query: 135 YD-----DAKAKDNLTPEDQNALFFTCISTDLHDLAL-------KLLEDHSGLAV-ARDG 181
+A TP LH+ A LL H G +
Sbjct: 111 LKHGACVNAMDLWQFTP--------------LHEAASKNRVEVCSLLLSH-GADPTLVNC 155
Query: 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHL 241
+ ++A+ + A + L + + L
Sbjct: 156 HGKSAVDM--------APTPELR-----------------ERLTYEFKGHSLLQ------ 184
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
AA + + + + + ++ + H AV H ++ + L+
Sbjct: 185 ---AAREADLAKVKKTLALEIINFKQ-PQSHETALHCAVASLHPKR----KQV--AELLL 234
Query: 302 A-----TFKDHDQNNMLHLAAKSPH 321
K+ D LH+AA+ H
Sbjct: 235 RKGANVNEKNKDFMTPLHVAAERAH 259
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 48/216 (22%), Positives = 70/216 (32%), Gaps = 53/216 (24%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVE--ELL 66
PL A G++ + LL + A + A T LH AA VE LL
Sbjct: 94 PLHNACSYGHYEVTELLLKH-------GACVNAMDLWQFTPLHEAA---SKNRVEVCSLL 143
Query: 67 KLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNE-------------RLLTMRGG 113
L D TL + +G +A A K + +
Sbjct: 144 -LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202
Query: 114 EN-------MTPLYMAAV---LAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCIS 158
N T L+ A ++ +A L + K KD +TP L
Sbjct: 203 INFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTP-----LHVAAER 257
Query: 159 TDLHDLALKLLEDHSGLAV-ARDGNYETALHVLARK 193
H+ +++L H G + A D +TALH A
Sbjct: 258 A--HNDVMEVLHKH-GAKMNALDSLGQTALHRAALA 290
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 4e-08
Identities = 102/617 (16%), Positives = 190/617 (30%), Gaps = 181/617 (29%)
Query: 26 KHLLGNEDPRS-------ILCAGIAKGYETLLHLAAGARQTGFVEELLK-----LM---- 69
H++ ++D S L + + + FVEE+L+ LM
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQK------------FVEEVLRINYKFLMSPIK 99
Query: 70 ----KPEDLTLQ-----DR--NGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118
+P +T DR N N F A ++ + LK + LL +R +N+
Sbjct: 100 TEQRQPSMMTRMYIEQRDRLYNDNQVF----AKYNVSRLQPYLKLRQALLELRPAKNVL- 154
Query: 119 LY-MA----AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS 173
+ + +A L + K + + D + + + + L++L+
Sbjct: 155 IDGVLGSGKTWVA-----LDVCLSYKVQCKM---DFKIFWLNLKNCNSPETVLEMLQK-- 204
Query: 174 GLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHS-----ALQLV------KSLWEA 222
L D N+ + + S Q L RL+ S L LV W A
Sbjct: 205 -LLYQIDPNWTSRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCL-LVLLNVQNAKAWNA 261
Query: 223 --------ILKRDDSEFTDLI-RKPSHLLFDAAELG-----NFEFLAE-LICSYPDLVHE 267
+ R L +H+ D + L + L C DL E
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 268 LDDNNRSIFHIAVLHRHANIFNLIYEIG-FTKELMATFK--DHDQNNMLH------LAAK 318
+ N +++ I ++ +AT+ H + L L
Sbjct: 322 VLTTNP--RRLSI-------------IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 319 SPH------------PSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNS---EGKT 363
P P I L L+WF ++ V ++ E +
Sbjct: 367 EPAEYRKMFDRLSVFPPSAHI-PTILL----SLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 364 PRELFSIEHSSLLRSGELWMKNTAESCMLVATLIATIMFAAAFSVPGGNDNNKGIPIHLR 423
SI S L L +I+ +++P D++ IP +L
Sbjct: 422 KESTISI-PSIYLE--------LKVKLENEYALHRSIV--DHYNIPKTFDSDDLIPPYLD 470
Query: 424 ETLFQVFA--MSDV-MALSSSSISILMFLSILTSRYAETDFLKSLPLKLMIGLSALFI-- 478
+ + + ++ + ++ FL FL+ K+ +A
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMV-FLDF--------RFLEQ---KIRHDSTAWNASG 518
Query: 479 SIINMMVAFSTTFFLAY------------HDRLNWVTTVTTVLAAVPVTLFVLLQYPLLN 526
SI+N + F+ Y + L+++ + L T LL+ L+
Sbjct: 519 SILNTLQQLK--FYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT--DLLRIALMA 574
Query: 527 D---IFYSTYHARTITR 540
+ IF + + + R
Sbjct: 575 EDEAIFEEAH--KQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.9 bits (131), Expect = 5e-08
Identities = 61/356 (17%), Positives = 113/356 (31%), Gaps = 110/356 (30%)
Query: 22 WPTAKHLLGNED-PRSI------LCAGIAKGYETLLHLAAGARQT--GFVEELLKLMKPE 72
W L N + P ++ L I + + ++ + EL +L+K +
Sbjct: 186 WLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241
Query: 73 D-----LTLQD-RNGNT--AF---CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121
L L + +N AF C KI LLT R +
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSC-----------KI-------LLTTRFKQVTD---- 279
Query: 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVA--- 178
+ A + L + LTP++ +L + DL ++L + ++
Sbjct: 280 -FLSAATTTHISLDHHSMT---LTPDEVKSLLLKYLDCRPQDLPREVL-TTNPRRLSIIA 334
Query: 179 ---RDG-----NY------------ETALHVLARKPSAFASRNQGLLTRL------MHSA 212
RDG N+ E++L+VL +P+ + + + RL H
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL--EPAEY----RKMFDRLSVFPPSAHIP 388
Query: 213 LQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNN 272
L+ +W ++K D + + K S E E S P + +
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHKYS-----LVEKQPKEST----ISIPSI---YLELK 436
Query: 273 RSIFHIAVLHRHANIFNLI--YEIGFTKELMATFKDHDQN---NML--HLAAKSPH 321
+ + LHR +++ Y I T + + + + HL
Sbjct: 437 VKLENEYALHR-----SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 7e-08
Identities = 62/298 (20%), Positives = 96/298 (32%), Gaps = 59/298 (19%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI----AKGYETLLHLAAGARQTGFVEELLK 67
L KA + + LL A + +G T LH A + VE LL+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEG-------GANVNFQEEEGGWTPLHNAVQMSREDIVELLLR 60
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAA 123
D L+ +NG T F A AGS+ + K+ L K NE T AA
Sbjct: 61 --HGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE-----CDFYGFTAFMEAA 113
Query: 124 VLAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLAL-------KLLEDHS 173
V + +LY + + + + T L D A K+L D
Sbjct: 114 VYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGA--TALMDAAEKGHVEVLKILLDEM 171
Query: 174 GLAV-ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDS 229
G V A D AL A + + L + + R +
Sbjct: 172 GADVNACDNMGRNALI--------HALLSSDDSDV-----EAITHLLLDHGADVNVRGER 218
Query: 230 EFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287
T LI A E + + L+ +++ D + ++ +AV + I
Sbjct: 219 GKTPLIL--------AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKI 268
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285 | Back alignment and structure |
|---|
Score = 41.3 bits (98), Expect = 5e-04
Identities = 29/146 (19%), Positives = 49/146 (33%), Gaps = 24/146 (16%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
L AA KG+ K LL A + A L A + VE + L
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMG------ADVNACDNMGRNALIHALLSSDDSDVEAITHL 204
Query: 69 M--KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-----NERLLTMRGGENMTPLYM 121
+ D+ ++ G T AV + + + +L++ N+ + T L +
Sbjct: 205 LLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-----TDSDGKTALLL 259
Query: 122 AAVLAQRDMALYLYD---DAKAKDNL 144
A L + +A L D +
Sbjct: 260 AVELKLKKIAELLCKRGASTDCGDLV 285
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 35/208 (16%), Positives = 71/208 (34%), Gaps = 38/208 (18%)
Query: 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
+ G+ P+ A + YET AA + +LL+
Sbjct: 16 AMEYLIEWKDGHSPSWVPSSYI-------AADVVSEYETPWWTAARKADEQALSQLLE-- 66
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVL 125
D+ D NG TA F GS +++ + + R MRGG T L+MAA
Sbjct: 67 -DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR--DMRGGL--TALHMAAGY 121
Query: 126 AQRDMALYLYD-----DAKAKDNLTP------EDQNALFFTCIS-------TDLHDLALK 167
+ ++ L + + + + LT + + + ++
Sbjct: 122 VRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEG 181
Query: 168 LLEDHSGLA--VARDGNYETALHVLARK 193
+ +++ + V + G + +++ K
Sbjct: 182 QVFEYAEVDEIVEKRGKGKDVEYLVRWK 209
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 4e-06
Identities = 33/186 (17%), Positives = 60/186 (32%), Gaps = 29/186 (15%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI----AKGYETLLHLAAGARQTGFVEELLK 67
L A G+ + L A + +G T LH+AAG + VE L++
Sbjct: 80 ALLFVAGLGSDKCVRLLAEAG-------ADLDHRDMRGGLTALHMAAGYVRPEVVEALVE 132
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127
D+ ++D G TA A ++ R+ G E + + V
Sbjct: 133 --LGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRI----GLEKVINVLEGQVFEY 186
Query: 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETAL 187
++ + K + ++ + + + H VA+D YE L
Sbjct: 187 AEVDEIV-----EKRG---KGKDVEYL--VRWKDGGDCEWVKGVHVAEDVAKD--YEDGL 234
Query: 188 HVLARK 193
+
Sbjct: 235 EYAVAE 240
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 3e-07
Identities = 37/165 (22%), Positives = 54/165 (32%), Gaps = 24/165 (14%)
Query: 47 ETLLHLAAGARQTGFVEELLKL-MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-- 103
+T LHLA + F++ LL E L LQ+ G TA A G + +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGA 69
Query: 104 --NERLLTMRGGENMTPLYMAAVLAQRDMALYL-----YDDAKAKDNLTPEDQNALFFTC 156
RGG T L++A + A L A D + Q+ T
Sbjct: 70 GVLVA---ERGGH--TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTS 124
Query: 157 ISTDLH-------DLALKLLEDHSGLAV-ARDGNYETALHVLARK 193
+ + ED L + A + + T LHV
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDW-RLQLEAENYDGHTPLHVAVIH 168
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 6e-07
Identities = 27/201 (13%), Positives = 51/201 (25%), Gaps = 32/201 (15%)
Query: 12 PLQKAALKGNWPTAKHLL---------GNEDPRSILCAGIAKGYETLLHLAAGARQTGFV 62
L A A LL ++ + + +
Sbjct: 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEE 140
Query: 63 EELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTP 118
E L ++ +G+T AV + +++ N+ G TP
Sbjct: 141 EPRD-EDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKP--EPTCGR--TP 195
Query: 119 LYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS 173
L++A + L A+ TP L + + + +LL H
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTP-----LGSALLRP--NPILARLLRAH- 247
Query: 174 GLAV-ARDGNYETALHVLARK 193
G G+ +
Sbjct: 248 GAPEPEDGGDKLSPCSSSGSD 268
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282 | Back alignment and structure |
|---|
Score = 40.6 bits (96), Expect = 9e-04
Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 7/77 (9%)
Query: 77 QDRNGNTAFCFAVAAGSIHIAKIMLKK--NERLLTMRGGENMTPLYMAAVLAQRDMALYL 134
+G+TA AV +L L ++ T L++AA+L + L
Sbjct: 5 VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64
Query: 135 YD-----DAKAKDNLTP 146
Y + T
Sbjct: 65 YAAGAGVLVAERGGHTA 81
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 7e-07
Identities = 34/167 (20%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-- 103
+E+ L LAA + +LL + ++ + G TA A ++ A ++++
Sbjct: 3 WESPLLLAAKENDVQALSKLL-KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAP 61
Query: 104 --NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTC 156
+T E T L++A + ++ L A+A ++ + L +
Sbjct: 62 ELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYY- 120
Query: 157 ISTDLHDLAL-------KLLEDHSGLAV-ARDGNYETALHVLARKPS 195
L A +LL +H G + A+D T LH+L +P+
Sbjct: 121 GEHPLSFAACVGSEEIVRLLIEH-GADIRAQDSLGNTVLHILILQPN 166
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 1e-05
Identities = 36/215 (16%), Positives = 65/215 (30%), Gaps = 46/215 (21%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGY--ETLLHLAAGARQTGFVEELL 66
PL AA + + LL G +G ET LH+AA L+
Sbjct: 6 PLLLAAKENDVQALSKLL--------KFEGCEVHQRGAMGETALHIAALYDNLEAAMVLM 57
Query: 67 KL---MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NER--------LLTMR 111
+ + E +T + G TA AV ++++ + +L + + R
Sbjct: 58 EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117
Query: 112 GGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCI--STDLHDL 164
PL AA + ++ L + A+ T L + +
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTV-----LHILILQPNKTFACQ 172
Query: 165 ALKLLEDH------SGLAVARDGNYETALHVLARK 193
LL + L + + T + +
Sbjct: 173 MYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 27/188 (14%), Positives = 55/188 (29%), Gaps = 27/188 (14%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYE--TLLHLAAGARQTGFVEELLKL 68
L ++L+G + + ++ E T LH A A T V+ L++
Sbjct: 40 LLLDSSLEGEFDLVQRIIYEV-------DDPSLPNDEGITALHNAVCAGHTEIVKFLVQ- 91
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
++ D +G T A + ++ + K +++ T +
Sbjct: 92 -FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAM--TYSDMQTAADKCEEME 148
Query: 125 LAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181
+ +LY + AL+ D L + E + R+
Sbjct: 149 EGYTQCSQFLYGVQEKMGIMNK---GVIYALWDYEPQNDDE---LPMKEGDCMTIIHRED 202
Query: 182 NYETALHV 189
E
Sbjct: 203 EDEIEWWW 210
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 8e-07
Identities = 40/199 (20%), Positives = 57/199 (28%), Gaps = 27/199 (13%)
Query: 1 ENRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYE--TLLHLAAGAR 57
+ R LN V L AAL G + + E T LH A
Sbjct: 13 KARRARLNPLVLLLDAALTGELEVVQQAVKEM-------NDPSQPNEEGITALHNAICGA 65
Query: 58 QTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGG 113
V+ L+ ++ D +G T A + I +++ T+ G
Sbjct: 66 NYSIVDFLIT--AGANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFAT--TLSDG 121
Query: 114 ENMTPLYMAAVLAQ--RDMALYLYDDAKAKDNLTPED-QNALFFTCISTDLHDLALKLLE 170
T + D A YL D + L AL+ L E
Sbjct: 122 A--TAFEKCDPYREGYADCATYLA-DVEQSMGLMNSGAVYALWDYSAEFGDE---LSFRE 175
Query: 171 DHSGLAVARDGNYETALHV 189
S + RDG ET
Sbjct: 176 GESVTVLRRDGPEETDWWW 194
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 9e-07
Identities = 36/199 (18%), Positives = 59/199 (29%), Gaps = 29/199 (14%)
Query: 2 NRNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYE--TLLHLAAGARQ 58
V + A G+ LL A I + T LH A
Sbjct: 33 KTKVKFDDGAVFLAACSSGDTEEVLRLLER-------GADINYANVDGLTALHQACIDDN 85
Query: 59 TGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGE 114
V+ L++ ++ D G A + G + IA+ ++ + E
Sbjct: 86 VDMVKFLVE--NGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA-----VNSE 138
Query: 115 NMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSG 174
TPL +A A ++ + + D + + A + L
Sbjct: 139 GDTPLDIAEEEAMEELLQNEV-NRQGVDIEAA-RKEE------ERIMLRDARQWLNSGHI 190
Query: 175 LAVARDGNYETALHVLARK 193
V + TALHV A K
Sbjct: 191 NDVRHAKSGGTALHVAAAK 209
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 49.0 bits (118), Expect = 1e-06
Identities = 37/194 (19%), Positives = 67/194 (34%), Gaps = 35/194 (18%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
P+ +AA+ G+ + ++L+ + + + LH A V+ LLK
Sbjct: 62 PMHEAAIHGHQLSLRNLISQG-------WAVNIITADHVSPLHEACLGGHLSCVKILLK- 113
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ + +T A +GS ++L+ + +P++ AA
Sbjct: 114 -HGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPE------SDLASPIHEAAR 166
Query: 125 LAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179
+ L D K TP L+ C + KLLE SG V +
Sbjct: 167 RGHVECVNSLIAYGGNIDHKISHLGTP-----LYLACENQQR-ACVKKLLE--SGADVNQ 218
Query: 180 DGNYETALHVLARK 193
++ LH + R
Sbjct: 219 GKGQDSPLHAVVRT 232
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 46.3 bits (111), Expect = 1e-05
Identities = 30/148 (20%), Positives = 50/148 (33%), Gaps = 30/148 (20%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI--AKGYETLLHLAAGARQTGFVE--ELLK 67
PL A + G+W LL + A + + +H AA + G VE L
Sbjct: 128 PLFNACVSGSWDCVNLLLQH-------GASVQPESDLASPIHEAA---RRGHVECVNSL- 176
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAA 123
+ ++ + + T A K +L+ N +G +PL+
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN------QGKGQDSPLHAVV 230
Query: 124 VLAQRDMALYLYD-----DAKAKDNLTP 146
A ++A L D AK + P
Sbjct: 231 RTASEELACLLMDFGADTQAKNAEGKRP 258
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 34/189 (17%)
Query: 16 AALKGNWPTAKHLLGNEDPRSILCAGIAK--GYETLLHLAAGARQTGFVEELLKLMKPED 73
+ + + L+ + +A G + + + A F L
Sbjct: 2 GSSHHHHHHSSGLVPRG-------SHMASMDGKQGGMDGSKPAGPRDFPGIRLLS---NP 51
Query: 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQRD 129
L + + A G + ++ + N ++++PL+ A +
Sbjct: 52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI-----ITADHVSPLHEACLGGHLS 106
Query: 130 MALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184
L + D TP LF C+S + LL H G +V + +
Sbjct: 107 CVKILLKHGAQVNGVTADWHTP-----LFNACVSG--SWDCVNLLLQH-GASVQPESDLA 158
Query: 185 TALHVLARK 193
+ +H AR+
Sbjct: 159 SPIHEAARR 167
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 33/144 (22%), Positives = 45/144 (31%), Gaps = 22/144 (15%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYETLLHLAAGARQTGFVEELLKLMK 70
A N LL A E LH AA T V+ LL
Sbjct: 34 ASYYAIADNNVRLVCTLLNAG-------ALKNLLENEFPLHQAATLEDTKIVKILLF--S 84
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLA 126
D + D GNTA +AV +G++ K+ +KK G + T Y A +L
Sbjct: 85 GLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFY--GKTGWK--TSFYHAVMLN 140
Query: 127 QRDMALYLY----DDAKAKDNLTP 146
+ Y L+
Sbjct: 141 DVSIVSYFLSEIPSTFDLAILLSC 164
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 21/108 (19%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK---- 103
L + ++L + +D D +G++A +A+A ++ + +L
Sbjct: 3 DLSRINTWK-----SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALK 57
Query: 104 NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTP 146
N EN PL+ AA L + L T
Sbjct: 58 NLL-------ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTA 98
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 30/162 (18%), Positives = 51/162 (31%), Gaps = 30/162 (18%)
Query: 12 PLQKAALKGNWPTAKHLL-----------GNEDPRSILCAGIAKGYETLLHLAAGARQTG 60
L A + N L+ G+ ++ G G E L LAA Q
Sbjct: 104 ALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFG-ELPLSLAACTNQLA 162
Query: 61 FVEELLKL-MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK---------------KN 104
V+ LL+ +P D++ +D GNT V +
Sbjct: 163 IVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPT 222
Query: 105 ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTP 146
+L + + +TPL +AA + + Y+ +
Sbjct: 223 LKLEEITNRKGLTPLALAASSGKIGVLAYILQ--REIHEPEC 262
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 30/234 (12%), Positives = 55/234 (23%), Gaps = 58/234 (24%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGY----------ETLLHLAAGARQTGF 61
+ A + N + LL L + +T L A G
Sbjct: 16 SIFDAVAQSNCQELESLL------PFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69
Query: 62 VE------------ELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK------- 102
+ + LK T G TA A+ ++ + ++++
Sbjct: 70 NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129
Query: 103 KNERLLTMRGGEN------MTPLYMAAVLAQRDMALYLYD--------DAKAKDNLTP-- 146
+ PL +AA Q + +L A+ T
Sbjct: 130 AANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLH 189
Query: 147 -------EDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARK 193
+ F + + L L + T L + A
Sbjct: 190 ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASS 243
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273 | Back alignment and structure |
|---|
Score = 41.7 bits (98), Expect = 3e-04
Identities = 25/126 (19%), Positives = 40/126 (31%), Gaps = 23/126 (18%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAA---------GARQTGFV 62
PL AA K LL N + + A + G T+LH T
Sbjct: 151 PLSLAACTNQLAIVKFLLQNSWQPADISARDSVGN-TVLHALVEVADNTVDNTKFVTSMY 209
Query: 63 EELLK-----LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT 117
E+L + + +R G T A ++G I + +L++
Sbjct: 210 NEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPE 261
Query: 118 PLYMAA 123
+ AA
Sbjct: 262 CRHAAA 267
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 4e-06
Identities = 35/193 (18%), Positives = 62/193 (32%), Gaps = 24/193 (12%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
L+ A + + L + T L++A + L+
Sbjct: 9 LLEAANQRDTKKVKEILQDT-------TYQVDEVDTEGNTPLNIAVHNNDIEIAKALID- 60
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128
+ D+ LQ+ ++ + +A A G I MLK L L AA
Sbjct: 61 -RGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHI 119
Query: 129 DMALYLYD----DAKAKDNLTPEDQNALFFTCISTDLHDLAL---KLLEDHSGLAV-ARD 180
D L + D +++ AL + + L KLL ++ G +D
Sbjct: 120 DNVKLLLEDGREDIDFQNDF---GYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSIKD 175
Query: 181 GNYETALHVLARK 193
+ TA+ +K
Sbjct: 176 NSGRTAMDYANQK 188
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 47.1 bits (112), Expect = 6e-06
Identities = 29/155 (18%), Positives = 47/155 (30%), Gaps = 27/155 (17%)
Query: 6 YLNICVPLQKAALKGNWPTAKHLL---------GNEDPRSILCAGIAKGYETLLHLAAGA 56
+ L A K + K L+ E L LAA
Sbjct: 87 FYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT 146
Query: 57 RQTGFVEELL-KLMKPEDLTLQDRNGNT----------------AFCFAVAAGSIHIAKI 99
+Q V LL +P L D GNT A + G + +
Sbjct: 147 KQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGAR 206
Query: 100 MLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYL 134
L +L + + +TPL +AA + ++ ++
Sbjct: 207 -LCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 36/227 (15%), Positives = 63/227 (27%), Gaps = 45/227 (19%)
Query: 12 PLQKAALKGNWPTAKHLL--GNEDPRSILCAGIAKGY--ETLLHLAAGARQTG---FVEE 64
L +G LL + + + + +G +T L A Q G +
Sbjct: 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64
Query: 65 LL---------KLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NER----- 106
LL K + T + G++A A+ S+ K++++ + R
Sbjct: 65 LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124
Query: 107 ---LLTMRGGENMTPLYMAAVLAQRDMALYLYD--------DAKAKDNLTP--------- 146
PL +AA Q D+ YL + +A T
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 147 EDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARK 193
D L L + T L + A++
Sbjct: 185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKE 231
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183 | Back alignment and structure |
|---|
Score = 45.9 bits (110), Expect = 7e-06
Identities = 32/144 (22%), Positives = 53/144 (36%), Gaps = 23/144 (15%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
G+ P+ A + YET AA + +LL+
Sbjct: 17 EYLIEWKDGHSPSWVPSSYIA-------ADVVSEYETPWWTAARKADEQALSQLLE---D 66
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQ 127
D+ D NG TA F GS +++ + + R MRGG +T L+MAA +
Sbjct: 67 RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHR--DMRGG--LTALHMAAGYVR 122
Query: 128 RDMALYLYD-----DAKAKDNLTP 146
++ L + + + + LT
Sbjct: 123 PEVVEALVELGADIEVEDERGLTA 146
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 7e-06
Identities = 28/147 (19%), Positives = 47/147 (31%), Gaps = 24/147 (16%)
Query: 12 PLQKAALKGNWPTA----KHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEE 64
L A + + + G+ A + +T LHLA Q E
Sbjct: 11 FLHLAIIHEEKALTMEVIRQVKGDL-------AFLNFQNNLQQTPLHLAVITNQPEIAEA 63
Query: 65 LLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-----NERLLTMRGGENMTPL 119
LL D L+D GNT A G + ++ + +L T L
Sbjct: 64 LLG--AGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCL 121
Query: 120 YMAAVLAQRDMALYLYD---DAKAKDN 143
++A++ + L D A++
Sbjct: 122 HLASIHGYLGIVELLVSLGADVNAQEP 148
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 1e-04
Identities = 42/271 (15%), Positives = 72/271 (26%), Gaps = 77/271 (28%)
Query: 47 ETLLHLAAGARQTGFVEELLKLM--KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK- 103
++ LHLA + E+++ + L Q+ T AV IA+ +L
Sbjct: 9 DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAG 68
Query: 104 ---NERLLTMRGGENMTPLYMAAVLAQRDMALYL-----------YDDAKAKDNLTPEDQ 149
R G TPL++A L A + T
Sbjct: 69 CDPELR---DFRGN--TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTC--- 120
Query: 150 NALFFTCISTDLHDLA--------LKLLEDHSGLAV-ARDGNY-ETALHVLARKPSAFAS 199
LH LA ++LL G V A++ TALH A
Sbjct: 121 -----------LH-LASIHGYLGIVELLVSL-GADVNAQEPCNGRTALH--------LAV 159
Query: 200 RNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAE 256
Q + LV L + + + ++ P L + + +
Sbjct: 160 DLQ-------N--PDLVSLLLKCGADVNRVTYQGYS-----PYQL---TWGRPSTR-IQQ 201
Query: 257 LICSYPDLVHELDDNNRSIFHIAVLHRHANI 287
+ ++ +
Sbjct: 202 QLGQLTLENLQMLPESEDEESYDTESEFTEF 232
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 9e-06
Identities = 48/340 (14%), Positives = 94/340 (27%), Gaps = 75/340 (22%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKG---YETLLHLAA-GARQTGFVEELLK 67
P + GN N + LH A G+ E + +
Sbjct: 64 PNPQGYGNGNDFLGDFNHTNL-------QIPTEPEPESPIKLHTEAAGSYAI--TEPITR 114
Query: 68 ----LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGE-------NM 116
++ R+ T + + S ++ ++ + G +
Sbjct: 115 ESVNIID-------PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDEN 167
Query: 117 TPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLAL----- 166
TPL +A + +R + YL K + LH A
Sbjct: 168 TPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA--------------LHQAAANRDFG 213
Query: 167 --KLLEDHSGLAV---ARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWE 221
+ + + L D N TAL ++A + LL + A ++
Sbjct: 214 MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLL--VEKGA-KVDYDGAA 270
Query: 222 AILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281
T L AA++ N + L+ + D++ ++ +A
Sbjct: 271 RKDSEKYKGRTALHY--------AAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQ 322
Query: 282 HRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321
+ + + G + E D + LA + H
Sbjct: 323 EGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNH 358
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 5e-05
Identities = 37/308 (12%), Positives = 75/308 (24%), Gaps = 64/308 (20%)
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRD 129
K + + A G I + L+ P
Sbjct: 26 KNRKNHQSITSSQHSLLEASYDGYIKRQRNELQHYSL----------YPNPQGYGNGNDF 75
Query: 130 MALYLY---DDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA 186
+ + + + E L + + + + + T
Sbjct: 76 LGDFNHTNLQIPTEPEP---ESPIKLHTEAAG---SYAITEPITRE-SVNIIDPRHNRTV 128
Query: 187 LHVLARKPSAFASRNQGL-LTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLL 242
LH + + N + + K A + D E T L L
Sbjct: 129 LH--------WIASNSSAEKSEDLIV--HEAKECIAAGADVNAMDCDENTPL-----ML- 172
Query: 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFN-LIYEIGFTKELM 301
A L + + + RS H A +R + ++ ++
Sbjct: 173 --AVLARRRR-LVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE 229
Query: 302 ATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEK-----IVQPTFREM 356
D + L + A + +V+ +LL VEK ++
Sbjct: 230 E--LDRNGMTALMIVAHNEGRDQVASA---------KLL----VEKGAKVDYDGAARKDS 274
Query: 357 KNSEGKTP 364
+ +G+T
Sbjct: 275 EKYKGRTA 282
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 32/149 (21%), Positives = 46/149 (30%), Gaps = 26/149 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGN------EDPRSILCAGIAKGY----ETLLHLAAGARQTGF 61
L A + + L+ + GY E L LAA Q
Sbjct: 96 ALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI 155
Query: 62 VEELL-KLMKPEDLTLQDRNGNTAFCFAVAAGS---------IHIAKIMLKKNERLLTMR 111
V L K DL QD GNT VA + ++L K +L
Sbjct: 156 VHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDT 215
Query: 112 GGEN------MTPLYMAAVLAQRDMALYL 134
E ++PL MAA + + ++
Sbjct: 216 NLEALLNNDGLSPLMMAAKTGKIGIFQHI 244
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 41/257 (15%), Positives = 75/257 (29%), Gaps = 37/257 (14%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN-E 105
LAA + L +L E + + AF A G +H+ + +
Sbjct: 129 YQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT 188
Query: 106 RLLTMRGGENMTPLYMAAVLAQR---DMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162
M EN AA R ++ +L D + ++ +
Sbjct: 189 EATAMIQAENYYAFRWAA--VGRGHHNVINFLL-DCPVMLAYAEIHEFEYGEKYVNPFIA 245
Query: 163 DLALKLLEDHSGLAVA-RDGNYE-----------TALHVLARKPSAFASRNQGLLTRLMH 210
+L E H ++ DG ++ L L R+
Sbjct: 246 RHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND--------------E 291
Query: 211 SALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDD 270
L ++ L + + + + LL A LGN L+ S P ++
Sbjct: 292 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQG-ACALLLSIPSVLALTKA 350
Query: 271 NNRSIFHIAVLHRHANI 287
NN ++I ++
Sbjct: 351 NN---YYINETGGRLDL 364
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 4e-05
Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 26/303 (8%)
Query: 30 GNEDPRSILCAGIAKGY--ETLLHLAAGARQTGFVEELLKLMKP-EDLTLQDRNGNTAFC 86
N + + + KG E + +AA + ++ L L+ E + + AF
Sbjct: 74 YNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFR 133
Query: 87 FAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD--DAKAKDN 143
A G +H+ + + ++ M EN +AA + L + +A
Sbjct: 134 LAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAM 193
Query: 144 LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203
+ E+ A + + H++ LL+ LA A +E + + +R +
Sbjct: 194 IQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKE 253
Query: 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPD 263
+ S V L F L L + + + L+ S P
Sbjct: 254 MHDAFKLSNPDGVFDLVTKSECLQG--FYML-----RNLIRRNDEVLLDDIRFLL-SIPG 305
Query: 264 L-----VHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318
+ + + + +A+ + L+ I L + N ++
Sbjct: 306 IKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLAL-------TKANNYYINET 358
Query: 319 SPH 321
Sbjct: 359 GGR 361
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327 | Back alignment and structure |
|---|
Score = 46.2 bits (109), Expect = 1e-05
Identities = 30/213 (14%), Positives = 66/213 (30%), Gaps = 27/213 (12%)
Query: 114 ENMTPLYMAAVLAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDL--ALKL 168
TPL+ +A ++ +L + DN ++ L S + +D L
Sbjct: 130 HGNTPLHWLTSIANLELVKHLVKHGSNRLYGDN---MGESCLVKAVKSVNNYDSGTFEAL 186
Query: 169 LEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKR-- 226
L+ + D T LH + T +A + L I+K+
Sbjct: 187 LDYLYPCLILEDSMNRTILHHIIITSGM---------TGCSAAAKYYLDILMGWIVKKQN 237
Query: 227 DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHAN 286
+ ++ + + +L ++++ D N + +IA + +
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297
Query: 287 IFNLIYEIGFTKELMA--TFKDHDQNNMLHLAA 317
I + + + G A + + A
Sbjct: 298 IVDALLDYG------ADPFIANKSGLRPVDFGA 324
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 35/239 (14%), Positives = 76/239 (31%), Gaps = 36/239 (15%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK---- 103
+ +LA + E +L T D++ TA +A +AG I + +L+
Sbjct: 9 MICNLAYSGKLDELKERILA--DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 66
Query: 104 NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163
N+ + +PL++AA ++ L + + L +
Sbjct: 67 ND-----KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKN--RH 119
Query: 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAI 223
+L + A+D TA+H A K + + ++ +
Sbjct: 120 EIAVMLLEGGANPDAKDHYDATAMHRAAAKGN--------------LKMVHILLFYKAST 165
Query: 224 LKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282
+D T L A + E A+ + + ++ + ++ +A
Sbjct: 166 NIQDTEGNTP--------LHLACDEERVE-EAKFLVTQGASIYIENKEEKTPLQVAKGG 215
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 33/149 (22%), Positives = 53/149 (35%), Gaps = 9/149 (6%)
Query: 47 ETLLHLAAGARQTGFVE--ELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
T LH A G E E L L + +D G + A +AG I K +L K
Sbjct: 41 RTALHWAC---SAGHTEIVEFL-LQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKG 96
Query: 105 ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164
+ TPL+ AA + ++A+ L + D D A+ +
Sbjct: 97 AH-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKG--NLK 153
Query: 165 ALKLLEDHSGLAVARDGNYETALHVLARK 193
+ +L + +D T LH+ +
Sbjct: 154 MVHILLFYKASTNIQDTEGNTPLHLACDE 182
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172 | Back alignment and structure |
|---|
Score = 44.3 bits (106), Expect = 2e-05
Identities = 27/144 (18%), Positives = 46/144 (31%), Gaps = 19/144 (13%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
+ + A +G K L D +++ +G+ T L A+ + V LL+
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGD--NLVNKPDERGF-TPLIWASAFGEIETVRFLLE--WG 59
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQ 127
D + + +A A G I ++L++ N TPL A
Sbjct: 60 ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINI-----YDWNGGTPLLYAVRGNH 114
Query: 128 RDMALYLYD-----DAKAKDNLTP 146
L +A TP
Sbjct: 115 VKCVEALLARGADLTTEADSGYTP 138
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 25/147 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
L AA AK LL A + T LH A A G + L++
Sbjct: 28 ALHLAARYSRSDAAKRLLEAS-------ADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ DL + +G T A + + ++ N + L+ AA
Sbjct: 81 -RATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA-----VDDLGKSALHWAAA 134
Query: 125 LAQRDMALYLYD-----DAKAKDNLTP 146
+ D A+ L D + TP
Sbjct: 135 VNNVDAAVVLLKNGANKDMQNNREETP 161
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 2e-04
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 27/148 (18%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI--AKGY--ETLLHLAAGARQTGFVEELLK 67
PL A + L+ N A A+ + T L LAA G +E+L+
Sbjct: 61 PLHAAVSADAQGVFQILIRNR-------ATDLDARMHDGTTPLILAARLAVEGMLEDLIN 113
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAA 123
D+ D G +A +A A ++ A ++LK + + TPL++AA
Sbjct: 114 --SHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM-----QNNREETPLFLAA 166
Query: 124 VLAQRDMALYLYD-----DAKAKDNLTP 146
+ A L D D + P
Sbjct: 167 REGSYETAKVLLDHFANRDITDHMDRLP 194
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 40/160 (25%), Positives = 63/160 (39%), Gaps = 30/160 (18%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
ET LHLAA ++ + LL+ D +QD G T AV+A + + +I+++
Sbjct: 26 ETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT 83
Query: 107 LLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDL 161
L R + TPL +AA LA M L + +A + L
Sbjct: 84 DLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA--------------L 129
Query: 162 HDLAL-------KLLEDHSGLAV-ARDGNYETALHVLARK 193
H A +L + G ++ ET L + AR+
Sbjct: 130 HWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAARE 168
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 43.9 bits (105), Expect = 2e-05
Identities = 29/147 (19%), Positives = 41/147 (27%), Gaps = 26/147 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYE--TLLHLAAGARQTGFVEELLKL 68
+ + A +G + E I E T L AA Q VE LL+
Sbjct: 6 SVHQLAAQGEMLYLATRIEQE-------NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQ- 57
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
D L + +A A + G I K++L NE TPL A
Sbjct: 58 -NGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE-----YDWNGGTPLLYAVH 111
Query: 125 LAQRDMALYLYD-----DAKAKDNLTP 146
L + +
Sbjct: 112 GNHVKCVKMLLESGADPTIETDSGYNS 138
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167 | Back alignment and structure |
|---|
Score = 39.3 bits (93), Expect = 8e-04
Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 16/109 (14%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
+H A + ++ ++ + + D G T +A A G I + + +L+
Sbjct: 4 SLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD 61
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTP 146
G + L +A D+ L D + + TP
Sbjct: 62 PQL-----LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTP 105
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 3e-05
Identities = 32/148 (21%), Positives = 51/148 (34%), Gaps = 17/148 (11%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI---AKGYETLLHLAAGARQTGFVEELLKL 68
PL +AA +GN + L N G+ K T L+ A VE L
Sbjct: 76 PLHEAAKRGNLSWLRECLDNR-------VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQ 128
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128
+L Q++ G+TA A G I +++L K R +R E MA A
Sbjct: 129 PNI-ELNQQNKLGDTALHAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACA 186
Query: 129 DMALYLYD-----DAKAKDNLTPEDQNA 151
+ ++ ++ +
Sbjct: 187 SLLKKKQGTDAVRTLSNAEDYLDDEDSD 214
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 22/148 (14%), Positives = 38/148 (25%), Gaps = 28/148 (18%)
Query: 10 CVPLQKAALKGNWPTAKHLLGNE-DPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKL 68
V + +A T L E D I +T + L
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMS-----DTNWWKGTS-------KGRTGL 60
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ + Q + + A G++ + L N T LY A
Sbjct: 61 IPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-----LDKAGSTALYWACH 115
Query: 125 LAQRDMALYLYD------DAKAKDNLTP 146
+D+ L+ + + K T
Sbjct: 116 GGHKDIVEMLFTQPNIELNQQNKLGDTA 143
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 35/193 (18%), Positives = 58/193 (30%), Gaps = 24/193 (12%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
PL + LL + ++ G+ T H+A V+ L
Sbjct: 39 PLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGW-TPFHIACSVGNLEVVKSLYDRPLK 97
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQ 127
DL G T AV +++ +++ + N PL+ AA +
Sbjct: 98 PDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI-----KDKFNQIPLHRAASVGS 152
Query: 128 RDMALYLYD------DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAV-ARD 180
+ L + + K TP LF D A+ L+E + G D
Sbjct: 153 LKLIELLCGLGKSAVNWQDKQGWTP-----LFHALAEGHG-DAAVLLVEKY-GAEYDLVD 205
Query: 181 GNYETALHVLARK 193
A V +
Sbjct: 206 NKGAKAEDVALNE 218
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 44.4 bits (106), Expect = 3e-05
Identities = 36/207 (17%), Positives = 62/207 (29%), Gaps = 52/207 (25%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGY---------ETLLHLAAGARQTGFV 62
PL +A ++ + + LL +K LH + +
Sbjct: 5 PLHQACMENEFFKVQELL------------HSKPSLLLQKDQDGRIPLHWSVSFQAHEIT 52
Query: 63 EELLKLM-KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGEN------ 115
LL M D +G T F A + G++ + K L +
Sbjct: 53 SFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKS-------LYDRPLKPDLNKITN 105
Query: 116 --MTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168
+T L++A +++ +L + K K N P L L L +L
Sbjct: 106 QGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIP-----LHRAASVGSL-KLI-EL 158
Query: 169 LEDHSGLAV--ARDGNYETALHVLARK 193
L G + +D T L +
Sbjct: 159 LCGL-GKSAVNWQDKQGWTPLFHALAE 184
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228 | Back alignment and structure |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 34/166 (20%), Positives = 57/166 (34%), Gaps = 37/166 (22%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
LH A + V+ELL KP L +D++G ++V+ + I +L K
Sbjct: 3 NYPLHQACMENEFFKVQELL-HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-------DAKAKDNLTPEDQNALFFT 155
N G TP ++A + ++ LYD + +T
Sbjct: 62 VNLDDYPDDSGW--TPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTC--------- 110
Query: 156 CISTDLHDLAL-------KLLEDHSGLAV-ARDGNYETALHVLARK 193
LH + L ++ G +V +D + LH A
Sbjct: 111 -----LHLAVGKKWFEVSQFLIEN-GASVRIKDKFNQIPLHRAASV 150
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 49/210 (23%), Positives = 78/210 (37%), Gaps = 50/210 (23%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKG----------YETLLHLAAGARQTGF 61
PL A+ G + ED +++ I +G ET LHLAA ++
Sbjct: 13 PLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDA 72
Query: 62 VEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-----NERLLTMRGGENM 116
+ LL+ D +QD G T AV+A + + +I+++ + R M G
Sbjct: 73 AKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR---MHDGT-- 125
Query: 117 TPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLAL----- 166
TPL +AA LA M L + +A + LH A
Sbjct: 126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA--------------LHWAAAVNNVD 171
Query: 167 --KLLEDHSGLAV-ARDGNYETALHVLARK 193
+L + G ++ ET L + AR+
Sbjct: 172 AAVVLLKN-GANKDMQNNREETPLFLAARE 200
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 44.0 bits (105), Expect = 5e-05
Identities = 43/198 (21%), Positives = 69/198 (34%), Gaps = 32/198 (16%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIA------KGYETLLHLAAGARQTGFVEEL 65
PL A ++GN P L+ ++ G +T LHLA V L
Sbjct: 12 PLHIAVVQGNLPAVHRLV------NLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLL 65
Query: 66 LKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLT---MRGGENMTPLYMA 122
+ DR+G TA A S + +L R + +T L++A
Sbjct: 66 VT--AGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVA 123
Query: 123 AVLAQRDMALYLYD-----DAK-AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLA 176
++ L + DA K +P L + L + +LL H G
Sbjct: 124 VNTECQETVQLLLERGADIDAVDIKSGRSP-----LIHAVENNSL-SMV-QLLLQH-GAN 175
Query: 177 V-ARDGNYETALHVLARK 193
V A+ + +ALH + +
Sbjct: 176 VNAQMYSGSSALHSASGR 193
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 34/203 (16%), Positives = 62/203 (30%), Gaps = 46/203 (22%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
PL A + + L+ A A +T HLA R + LL
Sbjct: 49 PLHLAVITTLPSVVRLLVTAG-------ASPMALDRHGQTAAHLACEHRSPTCLRALLDS 101
Query: 69 --MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMA 122
DL ++ +G TA AV +++L++ + ++ G +PL A
Sbjct: 102 AAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAV--DIKSGR--SPLIHA 157
Query: 123 AVLAQRDMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLAL-------KLLE 170
M L +A+ + LH + + L
Sbjct: 158 VENNSLSMVQLLLQHGANVNAQMYSGSSA--------------LHSASGRGLLPLVRTLV 203
Query: 171 DHSGLAVARDGNYETALHVLARK 193
+ ++ + +T L V +
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSR 226
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 44/271 (16%), Positives = 78/271 (28%), Gaps = 73/271 (26%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPE--DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK- 103
+T LH+A V L+ L + +L + + T AV + ++++
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 69
Query: 104 ---NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD---------DAKAKDNLTPEDQNA 151
R G+ T ++A L D +A+ D LT
Sbjct: 70 ASPMAL---DRHGQ--TAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTA----- 119
Query: 152 LFFTCISTDLHDLAL-------KLLEDHSGLAV-ARDGNY-ETALHVLARKPSAFASRNQ 202
LH +LL + G + A D + L A N
Sbjct: 120 ---------LHVAVNTECQETVQLLLER-GADIDAVDIKSGRSPLI--------HAVENN 161
Query: 203 GLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259
L +V+ L + + + S + L H A+ G L +
Sbjct: 162 -------S--LSMVQLLLQHGANVNAQMYSGSSAL-----HS---ASGRGLLP-LVRTLV 203
Query: 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNL 290
+ +N + +A R +I
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRG 234
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 6e-05
Identities = 30/146 (20%), Positives = 50/146 (34%), Gaps = 25/146 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGY--ETLLHLAAGARQTGFVEELLKLM 69
L +AA G + L+ N A + + LHLAA E LL+
Sbjct: 5 KLLEAARAGQDDEVRILMANG-------APFTTDWLGTSPLHLAAQYGHFSTTEVLLR-- 55
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVL 125
+ + T A + G +I +++LK N + M MT L+ A
Sbjct: 56 AGVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAK--DMLK---MTALHWATEH 110
Query: 126 AQRDMALYLYD-----DAKAKDNLTP 146
+++ L ++K T
Sbjct: 111 NHQEVVELLIKYGADVHTQSKFCKTA 136
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 41.6 bits (99), Expect = 9e-05
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 16/109 (14%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--- 103
ETLLH+A+ VE LL+ D ++D G T A G + + +++L+
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL 68
Query: 104 -NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTP 146
N G +N +PL+ AA D+ L +A L P
Sbjct: 69 VNT-----TGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRP 112
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137 | Back alignment and structure |
|---|
Score = 38.9 bits (92), Expect = 8e-04
Identities = 25/130 (19%), Positives = 45/130 (34%), Gaps = 21/130 (16%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
L A++KG+ P+ ++LL N + K + T LH A VE LL+
Sbjct: 13 LLHIASIKGDIPSVEYLLQNG-------SDPNVKDHAGWTPLHEACNHGHLKVVELLLQ- 64
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAV 124
+ ++ A G + I K++L N + P+
Sbjct: 65 -HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA-----VNIFGLRPVDYTDD 118
Query: 125 LAQRDMALYL 134
+ + + L
Sbjct: 119 ESMKSLLLLP 128
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 40/198 (20%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEELLKL 68
PL AA G+ L+ A I T L AA V+ L+K
Sbjct: 14 PLHAAAEAGHVDICHMLVQAG-------ANIDTCSEDQRTPLMEAAENNHLEAVKYLIK- 65
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128
+ +D G+T A G + + +L + + + TP+ A
Sbjct: 66 -AGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHV 124
Query: 129 DMALYLYD-----DAKAKDNLTPEDQNALFFTCISTDLHDLAL-------KLLEDHSGLA 176
D+ L + + + LH A ++L
Sbjct: 125 DLVKLLLSKGSDINIRDNEENIC--------------LHWAAFSGCVDIAEILLAA-KCD 169
Query: 177 V-ARDGNYETALHVLARK 193
+ A + + ++ LH+ AR+
Sbjct: 170 LHAVNIHGDSPLHIAARE 187
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 1e-04
Identities = 34/146 (23%), Positives = 56/146 (38%), Gaps = 23/146 (15%)
Query: 12 PLQKAALKGNWPTAKHLL--GNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
L AA KG++ ++LL G D G T + A + V+ LL
Sbjct: 80 CLHLAAKKGHYEVVQYLLSNGQMDVNCQ-----DDGGWTPMIWATEYKHVDLVKLLLS-- 132
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVL 125
K D+ ++D N +A +G + IA+I+L + +PL++AA
Sbjct: 133 KGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHA-----VNIHGDSPLHIAARE 187
Query: 126 AQRDMALYLYD-----DAKAKDNLTP 146
+ D + K K+ TP
Sbjct: 188 NRYDCVVLFLSRDSDVTLKNKEGETP 213
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179 | Back alignment and structure |
|---|
Score = 42.4 bits (101), Expect = 1e-04
Identities = 29/144 (20%), Positives = 49/144 (34%), Gaps = 19/144 (13%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
+ +GN + L N + + L G G + LH A ++ VE L+ +
Sbjct: 8 DIFTQCREGNAVAVRLWLDNTE--NDLNQGDDHG-FSPLHWACREGRSAVVEMLIM--RG 62
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLYMAAVLAQ 127
+ + +R +T A + G I + +L+ N G PL+ A Q
Sbjct: 63 ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV--NEHG---NVPLHYACFWGQ 117
Query: 128 RDMALYLYD-----DAKAKDNLTP 146
+A L K P
Sbjct: 118 DQVAEDLVANGALVSICNKYGEMP 141
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 30/148 (20%), Positives = 51/148 (34%), Gaps = 26/148 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGYE--TLLHLAAGARQTGFVEELLKL 68
PL A +G+ L+ A E + +HLAA T V L+
Sbjct: 79 PLHWATRQGHLSMVVQLMKYG-------ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIA- 130
Query: 69 MKPEDLTLQDRNGNTAFCFAVAAG-SIHIAKIMLKK----NERLLTMRGGENMTPLYMAA 123
K +D+ + D+NG T +A S+ +++L N T L+ A
Sbjct: 131 -KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLG--DKYHK--NTALHWAV 185
Query: 124 VLAQRDMALYLYD-----DAKAKDNLTP 146
+ + L + DA+ +
Sbjct: 186 LAGNTTVISLLLEAGANVDAQNIKGESA 213
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162 | Back alignment and structure |
|---|
Score = 40.1 bits (95), Expect = 5e-04
Identities = 28/169 (16%), Positives = 53/169 (31%), Gaps = 39/169 (23%)
Query: 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101
+A+ + L AA + LL+ ++ Q+ G TA G+ IA+ +L
Sbjct: 1 MAEPWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVM-KLGNPEIARRLL 57
Query: 102 KK----NERLLTMRGGENMTPLYMAAVLAQRDMALYLYD-----DAKAKDNLTPEDQNAL 152
+ + + ++ AA D L + + + + P
Sbjct: 58 LRGANPDL-----KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLP------ 106
Query: 153 FFTCISTDLHDLAL-------KLLEDHSGLAV-ARDGNYETALHVLARK 193
LH A + L H+ V R+ +TA +
Sbjct: 107 --------LHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLY 147
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169 | Back alignment and structure |
|---|
Score = 39.7 bits (94), Expect = 7e-04
Identities = 39/151 (25%), Positives = 58/151 (38%), Gaps = 26/151 (17%)
Query: 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGI-AKGY--ETLLHLAAGARQTGFVEE 64
++ L +AA G + L+ N A + A+ T LHLAA VE
Sbjct: 13 DLGKKLLEAARAGRDDEVRILMANG-------ADVNAEDASGWTPLHLAAFNGHLEIVEV 65
Query: 65 LLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK----NERLLTMRGGENMTPLY 120
LLK D+ D G T A G + I +++LK N E TPL+
Sbjct: 66 LLK--NGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA-----NDMEGHTPLH 118
Query: 121 MAAVLAQRDMALYLYD-----DAKAKDNLTP 146
+AA+ ++ L +A+ K T
Sbjct: 119 LAAMFGHLEIVEVLLKNGADVNAQDKFGKTA 149
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 1n11_A | 437 | Ankyrin; clathrin, BAND 3, anion exchanger, struct | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 2xai_A | 261 | ASB-9, ankyrin repeat and SOCS box protein 9; tran | 100.0 | |
| 4g8k_A | 337 | 2-5A-dependent ribonuclease; ankyrin-repeat domain | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 3utm_A | 351 | Tankyrase-1; tankyrase, TNKS, ankryin repeat clust | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 2fo1_E | 373 | LIN-12 protein; beta-barrel, protein-DNA complex, | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 3d9h_A | 285 | CDNA FLJ77766, highly similar to HOMO sapiens anky | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 3b7b_A | 237 | Euchromatic histone-lysine N-methyltransferase 1; | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 3ljn_A | 364 | Hypothetical protein; ankyrin, structural genomics | 100.0 | |
| 1oy3_D | 282 | Transcription factor inhibitor I-kappa-B-beta; pro | 100.0 | |
| 1yyh_A | 253 | HN1;, notch 1, ankyrin domain; ankyrin repeats, ce | 100.0 | |
| 1k1a_A | 241 | B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa | 100.0 | |
| 2dzn_A | 228 | Probable 26S proteasome regulatory subunit P28; an | 100.0 | |
| 3aji_A | 231 | 26S proteasome non-ATPase regulatory subunit 10; g | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 4b93_B | 269 | Ankyrin repeat domain-containing protein 27; endoc | 100.0 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 1s70_B | 299 | 130 kDa myosin-binding subunit of smooth muscle my | 100.0 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 100.0 | |
| 3kea_A | 285 | K1L; tropism, ANK repeat, viral protein; 2.30A {Va | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 1ikn_D | 236 | Protein (I-kappa-B-alpha), protein (NF-kappa-B P50 | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 2rfa_A | 232 | Transient receptor potential cation channel subfa | 100.0 | |
| 3eu9_A | 240 | Huntingtin-interacting protein 14; epigenetics, an | 100.0 | |
| 2f8y_A | 223 | Notch homolog 1, translocation-associated (drosoph | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 1sw6_A | 327 | Regulatory protein SWI6; transcription regulation, | 100.0 | |
| 3hra_A | 201 | Ankyrin repeat family protein; structural protein; | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 2etb_A | 256 | Transient receptor potential cation channel subfam | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 100.0 | |
| 2pnn_A | 273 | Transient receptor potential cation channel subfa | 100.0 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.98 | |
| 4gpm_A | 169 | Engineered protein OR264; de novo protein, structu | 99.97 | |
| 3jxi_A | 260 | Vanilloid receptor-related osmotically activated p | 99.97 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.97 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.97 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.97 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.97 | |
| 4hbd_A | 276 | KN motif and ankyrin repeat domain-containing Pro; | 99.97 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.97 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.97 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.96 | |
| 3v30_A | 172 | DNA-binding protein rfxank; structural genomics co | 99.96 | |
| 2rfm_A | 192 | Putative ankyrin repeat protein TV1425; ANK repeat | 99.96 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.96 | |
| 2aja_A | 376 | Ankyrin repeat family protein; NESG, Q5ZSV0, struc | 99.96 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 1ihb_A | 162 | P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit | 99.96 | |
| 2vge_A | 229 | RELA-associated inhibitor; iaspp, nucleus, apoptos | 99.96 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.96 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.96 | |
| 3f6q_A | 179 | Integrin-linked protein kinase; ILK, integrin-link | 99.96 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.96 | |
| 3v31_A | 167 | Ankyrin repeat family A protein 2; structural geno | 99.96 | |
| 2y1l_E | 169 | Darpin-8.4; hydrolase-inhibitor complex, DEVD darp | 99.95 | |
| 3twr_A | 165 | Tankyrase-2; ankyrin repeat, protein-protein inter | 99.95 | |
| 1awc_B | 153 | Protein (GA binding protein beta 1); complex (tran | 99.95 | |
| 1ycs_B | 239 | 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres | 99.94 | |
| 1bd8_A | 156 | P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr | 99.94 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.93 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.93 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.93 | |
| 1d9s_A | 136 | Cyclin-dependent kinase 4 inhibitor B; helix-turn- | 99.93 | |
| 3t8k_A | 186 | Uncharacterized protein; structural genomics, PSI- | 99.93 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.93 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.92 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.92 | |
| 1bi7_B | 156 | P16INK4A, MTS1, multiple tumor suppressor; cyclin | 99.92 | |
| 1n0r_A | 126 | 4ANK, 4 ankyrin repeats; structural protein; 1.50A | 99.91 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.9 | |
| 2jab_A | 136 | H10-2-G3; HER2, darpin, ankyrin repeat protein, me | 99.89 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.89 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.89 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.88 | |
| 3c5r_A | 137 | BARD-1, BRCA1-associated ring domain protein 1; an | 99.88 | |
| 2b0o_E | 301 | UPLC1; arfgap, structural genomics, structural gen | 99.88 | |
| 3aaa_C | 123 | Myotrophin, protein V-1; actin capping protein, ba | 99.88 | |
| 3deo_A | 183 | Signal recognition particle 43 kDa protein; chloro | 99.88 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.87 | |
| 3ui2_A | 244 | Signal recognition particle 43 kDa protein, chlor; | 99.86 | |
| 3ehr_A | 222 | Osteoclast-stimulating factor 1; beta barrel, heli | 99.86 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.86 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.85 | |
| 1dcq_A | 278 | PYK2-associated protein beta; zinc-binding module, | 99.85 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.85 | |
| 1n0q_A | 93 | 3ANK, 3 ankyrin repeats; structural protein; 1.26A | 99.84 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.84 | |
| 3jue_A | 368 | Arfgap with coiled-coil, ANK repeat and PH domain | 99.82 | |
| 3lvq_E | 497 | ARF-GAP with SH3 domain, ANK repeat and PH domain | 99.81 | |
| 2l6b_A | 115 | NR1C; ankyrin, consensus, repeat protein, ising mo | 99.81 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.77 | |
| 2zgd_A | 110 | 3 repeat synthetic ankyrin; ankyrin repeat, hydrox | 99.71 |
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-51 Score=426.99 Aligned_cols=349 Identities=18% Similarity=0.162 Sum_probs=287.3
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.||..|+.++|++|++ .+ .+++ ..+..|.||||+|++.|+.+++++|++ .+++++.+|..|.||
T Consensus 10 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g-~~~~-~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~ 83 (437)
T 1n11_A 10 GGESGLTPLHVASFMGHLPIVKNLLQ--RG-ASPN-VSNVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTP 83 (437)
T ss_dssp -----CCHHHHHHHHTCHHHHHHHHH--TT-CCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCCH
T ss_pred cCCCCCCHHHHHHHCCCHHHHHHHHH--cC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCCCCCCCH
Confidence 45679999999999999999999999 56 5665 678899999999999999999999999 799999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +..+..|.||||+|++.|+.+++++|++++++....+..|.||||+|+..+.. .
T Consensus 84 L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~g~~--~ 160 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENNANP-NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKV--R 160 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCH--H
T ss_pred HHHHHHCCCHHHHHHHHhCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHHHHHHcCCH--H
Confidence 99999999999999999999997 88999999999999999999999999999998888889999999999987663 5
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH---------hH-------HHHHHHHHHHHHHHhcCCc
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR---------LM-------HSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~---------~~-------~~~~~~~~~l~~~l~~~~~ 228 (545)
+.++|.+.+.+++..+.+|.||||+|+..++.+.++.+..... .+ ....++++ .+++.+
T Consensus 161 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~----~Ll~~g- 235 (437)
T 1n11_A 161 VAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVAR----SLLQYG- 235 (437)
T ss_dssp HHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHH----HHHHTT-
T ss_pred HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHH----HHHHcC-
Confidence 6677778899999999999999999999998776655543110 00 12233444 444444
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCC
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHD 308 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~ 308 (545)
.+.+..+..|.||||+|+..|+.+++++|++++++ ++..|..|+||||+|+..|+.+++++|+++|++ ++.+|..
T Consensus 236 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~ 310 (437)
T 1n11_A 236 GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQAN-GNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM----VDATTRM 310 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC----TTCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc----CCCCCCC
Confidence 34455667888999999999999999999998888 788888999999999999999999999998888 7788899
Q ss_pred CCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhhh-cCccccccCCCCCChhhhhHhhh
Q 044420 309 QNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKIV-QPTFREMKNSEGKTPRELFSIEH 372 (545)
Q Consensus 309 G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l~-~~~~~~~~n~~G~Tpl~~a~~~~ 372 (545)
|+||||+|+..|+.+++++|.+ .+++.+......+.++.++ .|++++.+|.+|+||+++|.+..
T Consensus 311 g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp CCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTT
T ss_pred CCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence 9999999999999888888743 3455566666666666666 57888888888888888887654
|
| >1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-47 Score=391.17 Aligned_cols=325 Identities=20% Similarity=0.186 Sum_probs=268.2
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||+||..|+.+++++|++ .+ .+++ .++..|+||||+|+..|+.++|++|++ +|++++..|..|.||
T Consensus 43 ~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~t~ 116 (437)
T 1n11_A 43 SNVKVETPLHMAARAGHTEVAKYLLQ--NK-AKVN-AKAKDDQTPLHCAARIGHTNMVKLLLE--NNANPNLATTAGHTP 116 (437)
T ss_dssp SSSCCCCHHHHHHHHTCHHHHHHHHH--HT-CCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh--CC-CCCC-CCCCCCCCHHHHHHHCCCHHHHHHHHh--CCCCCCCCCCCCCcH
Confidence 45678999999999999999999998 55 5565 678899999999999999999999999 789999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.++++.|++++++. +..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..+.. .
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~ 193 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKEASQ-ACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNL--D 193 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCH--H
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-cCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCH--H
Confidence 99999999999999999999886 77888899999999999999999999999998888888888999988887653 5
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh---------hHhH-------HHHHHHHHHHHHHHhcCCc
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL---------TRLM-------HSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~---------~~~~-------~~~~~~~~~l~~~l~~~~~ 228 (545)
+.++|.+.+.+++..+.+|.||||+|+..|+.+..+.+... .+.+ ....+ +++.+++.+
T Consensus 194 ~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~~- 268 (437)
T 1n11_A 194 IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAE----MVALLLSKQ- 268 (437)
T ss_dssp HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHTTT-
T ss_pred HHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHCCCHH----HHHHHHhcC-
Confidence 56677777888888888888888888888877665544431 0111 11223 455555555
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCC
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHD 308 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~ 308 (545)
.+.+..+..|.||||+|++.|+.+++++|+++|.+ ++.+|..|+||||+|+.+|+.+++++|+++|++ +|.+|..
T Consensus 269 ~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad----~n~~~~~ 343 (437)
T 1n11_A 269 ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD----VNAKTKL 343 (437)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC----TTCCCTT
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCC----CCCCCCC
Confidence 45566778899999999999999999999999999 899999999999999999999999999999998 7889999
Q ss_pred CCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhh
Q 044420 309 QNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKI 348 (545)
Q Consensus 309 G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l 348 (545)
|+||||+|++.|+.+++++|.+ .+++++....+.+.++.+
T Consensus 344 g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l 396 (437)
T 1n11_A 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVL 396 (437)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred CCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999853 356666666555444433
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-45 Score=369.91 Aligned_cols=307 Identities=17% Similarity=0.100 Sum_probs=241.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+..+.++||.||+.|+.+.++.++. ..+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus 21 ~~~~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L 95 (351)
T 3utm_A 21 GEYKKDELLEAARSGNEEKLMALLT-PLN-VNCH-ASDGRKSTPLHLAAGYNRVRIVQLLLQ--HGADVHAKDKGGLVPL 95 (351)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHCC-TTT-TTCC-CSSTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHH
T ss_pred ccccchhHHHHHHcCCHHHHHHHHH-hcC-CCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCcHH
Confidence 3457899999999999999999999 455 5554 788999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
|+|+..|+.+++++|+++|+++ +..|..|.||||+|+..|+.+++++|+++|++++..+..|.+|++.++..... +..
T Consensus 96 ~~A~~~g~~~iv~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~-~~~ 173 (351)
T 3utm_A 96 HNACSYGHYEVTELLLKHGACV-NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELR-ERL 173 (351)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHH-HHH
T ss_pred HHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhH-HHH
Confidence 9999999999999999999997 88999999999999999999999999999999888999999999887654321 111
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
.... ..+++..++..++.+ .+..++... ......+..|.||||+|
T Consensus 174 ~~~~-------------~~~~~~~~~~~~~~~---------------------~~~~~l~~~-~~~~~~~~~~~t~L~~A 218 (351)
T 3utm_A 174 TYEF-------------KGHSLLQAAREADLA---------------------KVKKTLALE-IINFKQPQSHETALHCA 218 (351)
T ss_dssp HHHH-------------HHHHHHHHHHTTCHH---------------------HHHHHTTTC-CTTCCCTTTCCCHHHHH
T ss_pred Hhhh-------------cccHHHHHHHhccHH---------------------HHHHHHHhh-cccccCCCCCCCHHHHH
Confidence 1111 123455555555331 122223222 11223446678888888
Q ss_pred Hhc---CcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCC
Q 044420 246 AEL---GNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHP 322 (545)
Q Consensus 246 ~~~---g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~ 322 (545)
+.. +..+++++|++.|++ ++.+|.+|+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|+..|+.
T Consensus 219 ~~~~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~----~n~~d~~g~t~L~~A~~~~~~ 293 (351)
T 3utm_A 219 VASLHPKRKQVAELLLRKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAK----MNALDSLGQTALHRAALAGHL 293 (351)
T ss_dssp HHCCSTTHHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCH
T ss_pred HHHhCccHHHHHHHHHHcCCC-cCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHHcCcH
Confidence 887 557888888888888 788888888888888888888888888888887 677888888888888888887
Q ss_pred CccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhhhhhhh
Q 044420 323 SRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHSSLLRS 378 (545)
Q Consensus 323 ~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~~l~~~ 378 (545)
+++++|.+ .|++++.+|.+|+||+++|.+...+++.+
T Consensus 294 ~~v~~Ll~-------------------~gad~~~~~~~g~tal~~a~~~~~~~l~~ 330 (351)
T 3utm_A 294 QTCRLLLS-------------------YGSDPSIISLQGFTAAQMGNEAVQQILSE 330 (351)
T ss_dssp HHHHHHHH-------------------TTCCTTCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHHHHH-------------------cCCCCCCcCCCCCChhhhhhHHHHHHHHh
Confidence 77777632 26677888888888888886555544443
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=367.15 Aligned_cols=292 Identities=19% Similarity=0.185 Sum_probs=254.4
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
+...+|.|+||.||++|+.++|+.||+ +| ++++...+..|+||||+||+.|+.++|++|++ +|++++.+|..+.+
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~--~G-advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~ 94 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLE--GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGAT 94 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHH--HT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCC
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHH--CC-CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHH--cCCchhhhccCCCc
Confidence 445678999999999999999999999 77 77774444569999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC----------CCCChhhHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL----------TPEDQNALF 153 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------~~~~~t~l~ 153 (545)
|+|.++..++.++++.+++.++++ +.+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~ 173 (337)
T 4g8k_A 95 PFILAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALM 173 (337)
T ss_dssp HHHHHHHHTCHHHHHHHHTTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHH
T ss_pred hhHHHHhcccchhhHHhhhccchh-hhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHH
Confidence 999999999999999999999997 899999999999999999999999999999986543 345789999
Q ss_pred HHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhh
Q 044420 154 FTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTD 233 (545)
Q Consensus 154 ~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 233 (545)
+|+..+. .+++..+|.+.|++++.+|..|.||+|.++..+.... .+.+++.|++.+ .+++.
T Consensus 174 ~A~~~g~-~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~-----------------~~~i~~lLl~~g-ad~n~ 234 (337)
T 4g8k_A 174 DAAEKGH-VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-----------------VEAITHLLLDHG-ADVNV 234 (337)
T ss_dssp HHHHHTC-HHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTT-----------------HHHHHHHHHHTT-CCTTC
T ss_pred HHHHCCC-HHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCccc-----------------HHHHHHHHHHCC-CCCCC
Confidence 9987754 5777777778899999999999999999887664321 123445556665 56667
Q ss_pred hccCCChHHHHHHhcCcHHHHHHHHHH-CCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 234 LIRKPSHLLFDAAELGNFEFLAELICS-YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 234 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
+|.+|.||||+|+..|+.++++.|++. +.+ ++.+|.+|+||||+|+++|+.++|++|+++|++ +| +.||
T Consensus 235 ~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~-vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd----~n-----~~~~ 304 (337)
T 4g8k_A 235 RGERGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TD-----CGDL 304 (337)
T ss_dssp CCGGGCCHHHHHHHTTCHHHHHHHHTSTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCS----ST-----TCCH
T ss_pred cCCCCCCHHHHHHHhhhhHHHHHHHHhcCCc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CC-----CCCH
Confidence 789999999999999999999999986 667 999999999999999999999999999999998 44 3469
Q ss_pred hhhhccCCCCCccccccc
Q 044420 313 LHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 313 Lh~A~~~~~~~~~~~L~~ 330 (545)
||+|++.|+.+++++|.+
T Consensus 305 L~~A~~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 305 VMTARRNYDHSLVKVLLS 322 (337)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHH
Confidence 999999999999988843
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-43 Score=344.93 Aligned_cols=270 Identities=20% Similarity=0.182 Sum_probs=236.9
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.+|.||||.|++.|+.+++++|++ .+ .+++...+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~--~g-~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 77 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLE--GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--TT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHH--cC-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHH
Confidence 468999999999999999999999 55 56664458889999999999999999999999 89999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC----------CCCChhhHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL----------TPEDQNALFFTC 156 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------~~~~~t~l~~aa 156 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++.. +..|.||||.|+
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T 1wdy_A 78 LAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHH
Confidence 999999999999999999997 889999999999999999999999999999987766 677889999998
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
..+. .+.+..++...+.+++.+|..|.||||+|+..++... ..++ ++.+++.+ .+.+..+.
T Consensus 157 ~~~~-~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~-------------~~~i----~~~Ll~~g-~~~~~~~~ 217 (285)
T 1wdy_A 157 EKGH-VEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-------------VEAI----THLLLDHG-ADVNVRGE 217 (285)
T ss_dssp HHTC-HHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT-------------HHHH----HHHHHHTT-CCSSCCCT
T ss_pred HcCC-HHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccch-------------HHHH----HHHHHHcC-CCCCCcCC
Confidence 8655 4677777767799999999999999999999986432 1233 44455554 45566778
Q ss_pred CCChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhccc
Q 044420 237 KPSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKD 306 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d 306 (545)
.|.||||+|++.|+.+++++|++ .+.+ ++.+|.+|+||||+|+..++.+++++|+++|++ ++.+|
T Consensus 218 ~g~t~L~~A~~~~~~~~v~~Ll~~~g~~-~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~----~~~~d 283 (285)
T 1wdy_A 218 RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGD 283 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSS
T ss_pred CCCcHHHHHHHcCCHHHHHHHHhccCCC-ccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCC----CCccc
Confidence 89999999999999999999999 7888 899999999999999999999999999999999 55555
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-42 Score=336.88 Aligned_cols=255 Identities=17% Similarity=0.176 Sum_probs=231.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ-DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+|+||||.|++.|+.+++++|++ .+.+++.+ +..|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH--cCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHH
Confidence 58899999999999999999999 79999988 788999999999999999999999999997 889999999999999
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc----------CCCCchHHHHHHhC
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR----------DGNYETALHVLARK 193 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~----------d~~g~tpLh~A~~~ 193 (545)
..|+.+++++|+++|++++..+..|.||||+|+..+.. .+.++|.+.+.+++.. +..|.||||.|+..
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~--~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T 1wdy_A 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV--KALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH--HHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCH--HHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHc
Confidence 99999999999999999999999999999999987653 5667777888888877 78899999999999
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCc----HHHHHHHHHHCCCcccccc
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN----FEFLAELICSYPDLVHELD 269 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~----~~~v~~Ll~~~~~~~~~~d 269 (545)
|+. + +++.+++....+.+..+..|.||||+|+..|+ .+++++|+++|++ ++.+|
T Consensus 159 ~~~-----------------~----~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~-~~~~~ 216 (285)
T 1wdy_A 159 GHV-----------------E----VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRG 216 (285)
T ss_dssp TCH-----------------H----HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCC
T ss_pred CCH-----------------H----HHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCC-CCCcC
Confidence 965 3 35555555336667778999999999999999 9999999999999 89999
Q ss_pred cCCCcHHHHHHHhCchHHHHHHHh-hccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 270 DNNRSIFHIAVLHRHANIFNLIYE-IGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 270 ~~G~t~Lh~A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
..|+||||+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|++.++.+++++|.+
T Consensus 217 ~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~----~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHcCCHHHHHHHHhccCCC----ccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999999999 7888 78899999999999999999999988853
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-42 Score=334.28 Aligned_cols=255 Identities=16% Similarity=0.152 Sum_probs=189.9
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCc--------hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPR--------SILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTL 76 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~--------~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~ 76 (545)
-...|.|+||+||..|+.+.+..++. ..++ .......|.+|+||||+|+..|+.+++++|++ .|++++.
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~ 87 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKP-AGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLIS--QGWAVNI 87 (285)
T ss_dssp --------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHH--TTCCSCE
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCC-CccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHH--CCCCCCC
Confidence 34679999999999999888887654 2110 01123578899999999999999999999999 7999999
Q ss_pred ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHH
Q 044420 77 QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTC 156 (545)
Q Consensus 77 ~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa 156 (545)
+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 88 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~------------- 153 (285)
T 3d9h_A 88 ITADHVSPLHEACLGGHLSCVKILLKHGAQV-NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQP------------- 153 (285)
T ss_dssp ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSC-------------
T ss_pred cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCC-------------
Confidence 9999999999999999999999999999997 89999999999999999999999999999986321
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
+.+|.||||+|+..|+. ++ ++.+++.+ .+++..|.
T Consensus 154 -----------------------~~~g~t~L~~A~~~g~~-----------------~~----v~~Ll~~g-~~~~~~d~ 188 (285)
T 3d9h_A 154 -----------------------ESDLASPIHEAARRGHV-----------------EC----VNSLIAYG-GNIDHKIS 188 (285)
T ss_dssp -----------------------SCTTSCHHHHHHHHTCH-----------------HH----HHHHHHTT-CCTTCCBT
T ss_pred -----------------------CCCCCCHHHHHHHcCCH-----------------HH----HHHHHHCC-CCCCCcCC
Confidence 22366677777766643 23 33333343 34555667
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhh
Q 044420 237 KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A 316 (545)
.|.||||+|+..|+.+++++|++.|++ ++ .|..|+||||+|+..++.+++++|+++|++ ++.+|.+|+||||+|
T Consensus 189 ~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A 262 (285)
T 3d9h_A 189 HLGTPLYLACENQQRACVKKLLESGAD-VN-QGKGQDSPLHAVVRTASEELACLLMDFGAD----TQAKNAEGKRPVELV 262 (285)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHTTCC-TT-CCBTTBCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCGGGGS
T ss_pred CCCCHHHHHHHcCcHHHHHHHHHCCCC-CC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHHh
Confidence 888999999999999999999999999 67 489999999999999999999999999998 788999999999999
Q ss_pred ccCCCCCcccccc
Q 044420 317 AKSPHPSRVSIVS 329 (545)
Q Consensus 317 ~~~~~~~~~~~L~ 329 (545)
+. +.+++++|.
T Consensus 263 ~~--~~~~~~~Ll 273 (285)
T 3d9h_A 263 PP--ESPLAQLFL 273 (285)
T ss_dssp CT--TSHHHHHHH
T ss_pred cC--ccHHHHHHH
Confidence 94 456666664
|
| >4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-40 Score=331.87 Aligned_cols=261 Identities=20% Similarity=0.123 Sum_probs=232.8
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+..|+||||+||+.|+.++|++|++ ++ +.++ ..+..+.+|+|.++..++.+++..+++ .+.+++.+|..|.|||
T Consensus 56 ~~~g~TpLh~A~~~g~~~iv~~Ll~--~g-a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d~~g~t~l 129 (337)
T 4g8k_A 56 EEGGWTPLHNAVQMSREDIVELLLR--HG-ADPV-LRKKNGATPFILAAIAGSVKLLKLFLS--KGADVNECDFYGFTAF 129 (337)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCBCTTCCBHH
T ss_pred CCCCcCHHHHHHHcCCHHHHHHHHH--cC-Cchh-hhccCCCchhHHHHhcccchhhHHhhh--ccchhhhhccCCCCHH
Confidence 3458999999999999999999999 77 7776 789999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccc---------cCCCCCCCcHHHHHHHcCCHHHHHHHHH-cccCCccCCCCChhhHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLL---------TMRGGENMTPLYMAAVLAQRDMALYLYD-DAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~---------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~~t~l~~a 155 (545)
|+|+..|+.+++++|+++|+++. ...+..|.||||+|++.|+.+++++|++ .|++++..+..|.++++++
T Consensus 130 ~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~ 209 (337)
T 4g8k_A 130 MEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHA 209 (337)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHH
T ss_pred HHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHH
Confidence 99999999999999999998762 1345679999999999999999999996 5899999999999999998
Q ss_pred HHhcC--cHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhh
Q 044420 156 CISTD--LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTD 233 (545)
Q Consensus 156 a~~~~--~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 233 (545)
+.... ..+.+.++|.++|++++.+|.+|+||||+|+..|+.+ .++.++.....+++.
T Consensus 210 ~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~---------------------~v~~Ll~~~~~~vn~ 268 (337)
T 4g8k_A 210 LLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLG---------------------LVQRLLEQEHIEIND 268 (337)
T ss_dssp HHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHH---------------------HHHHHHTSTTCCTTC
T ss_pred HHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhH---------------------HHHHHHHhcCCcccC
Confidence 87644 3467889999999999999999999999999999653 355666665577888
Q ss_pred hccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchh
Q 044420 234 LIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKE 299 (545)
Q Consensus 234 ~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~ 299 (545)
+|.+|.||||+|++.|+.++|++|+++|++ ++ +.+|||+|+.+|+.++|++|+++|++++
T Consensus 269 ~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd-~n-----~~~~L~~A~~~~~~~iv~~Ll~~GA~~d 328 (337)
T 4g8k_A 269 TDSDGKTALLLAVELKLKKIAELLCKRGAS-TD-----CGDLVMTARRNYDHSLVKVLLSHGAKED 328 (337)
T ss_dssp BCTTSCBHHHHHHHTTCHHHHHHHHTTSCS-ST-----TCCHHHHHHHTTCHHHHHHHHHTTCCC-
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CC-----CCCHHHHHHHcCCHHHHHHHHHCcCCCC
Confidence 899999999999999999999999999998 55 4569999999999999999999999955
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-42 Score=345.22 Aligned_cols=264 Identities=17% Similarity=0.179 Sum_probs=195.9
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccC-CCCCcHHHHHHHcCCHHHHHHHH--------HcCCCcccc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIA-KGYETLLHLAAGARQTGFVEELL--------KLMKPEDLT 75 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~-~~g~T~Lh~A~~~g~~~~v~~Ll--------~~~~~~~~~ 75 (545)
.+.+|.||||.||..| .++++.|+. ..++ ..| ..|+||||+|+..|+.+++++|+ + .|+++|
T Consensus 90 ~~~~g~t~L~~Aa~~~-~~~~~~L~~-----~~~n-~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~--~ga~vn 160 (373)
T 2fo1_E 90 PEPESPIKLHTEAAGS-YAITEPITR-----ESVN-IIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA--AGADVN 160 (373)
T ss_dssp ----CCCHHHHHHHSS-SCCCSCCST-----TTTT-TCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHH--TCCCTT
T ss_pred CCCCCccHHHHHhcCC-chHHHHhcc-----cccc-ccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHh--cCCCCc
Confidence 4566888888888844 467777665 3333 345 67888888888888887777776 5 688888
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc---cCCccCCCCChhhH
Q 044420 76 LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA---KAKDNLTPEDQNAL 152 (545)
Q Consensus 76 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~---~~~~~~~~~~~t~l 152 (545)
.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+..|+.+++++|++++ .+++..+..|.|||
T Consensus 161 ~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L 239 (373)
T 2fo1_E 161 AMDCDENTPLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTAL 239 (373)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHH
T ss_pred CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCC-cccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHH
Confidence 88888888888888888888888888888886 788888888888888888888888888887 67777788888888
Q ss_pred HHHHHhcCc-HHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhh
Q 044420 153 FFTCISTDL-HDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEF 231 (545)
Q Consensus 153 ~~aa~~~~~-~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 231 (545)
|+|+..++. ...+.++|.+.|.+++..+. ...
T Consensus 240 ~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~-----------------------------------------------~~~ 272 (373)
T 2fo1_E 240 MIVAHNEGRDQVASAKLLVEKGAKVDYDGA-----------------------------------------------ARK 272 (373)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHTCCSSCCSG-----------------------------------------------GGT
T ss_pred HHHHHhCCcchHHHHHHHHHCCCCcccccc-----------------------------------------------ccc
Confidence 888877541 23445556666666654221 011
Q ss_pred hhhccCCChHHHHHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCC
Q 044420 232 TDLIRKPSHLLFDAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN 310 (545)
Q Consensus 232 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~ 310 (545)
...|..|.||||+|+..|+.+++++|++++ .+ ++.+|.+|+||||+|+.+|+.+++++|+++|++ ++.+|..|+
T Consensus 273 ~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad----~~~~d~~g~ 347 (373)
T 2fo1_E 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDH 347 (373)
T ss_dssp SSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSC
T ss_pred CcccccCCCHHHHHHHhCCHHHHHHHHHhcCCC-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----ccCCCCCCC
Confidence 123456777777777777888888888776 55 777777888888888888888888888887777 667777788
Q ss_pred ChhhhhccCCCCCccccccc
Q 044420 311 NMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 311 TpLh~A~~~~~~~~~~~L~~ 330 (545)
||||+|+..|+.+++++|.+
T Consensus 348 t~l~~A~~~g~~~iv~~Ll~ 367 (373)
T 2fo1_E 348 TARQLAQANNHHNIVDIFDR 367 (373)
T ss_dssp CHHHHHHHTTCHHHHHHHHT
T ss_pred CHHHHHHHcCCHHHHHHHHh
Confidence 88888888888777777754
|
| >3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-41 Score=334.69 Aligned_cols=296 Identities=18% Similarity=0.124 Sum_probs=235.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||+||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 54 ~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~iv~~Ll~--~g~~~~~~~~~g~t~ 127 (351)
T 3utm_A 54 SDGRKSTPLHLAAGYNRVRIVQLLLQ--HG-ADVH-AKDKGGLVPLHNACSYGHYEVTELLLK--HGACVNAMDLWQFTP 127 (351)
T ss_dssp SSTTCCCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-ccCCCCCcHHHHHHHCCCHHHHHHHHH--CCCCCCCCCCCCCCH
Confidence 45679999999999999999999999 66 6666 789999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +..+..|.||+++|+..+..+.+++.... .+++.++...+ .+.
T Consensus 128 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~~~l~~a~~~~~~~~~~~~~~~------------~~~~~~~~~~~-~~~ 193 (351)
T 3utm_A 128 LHEAASKNRVEVCSLLLSHGADP-TLVNCHGKSAVDMAPTPELRERLTYEFKG------------HSLLQAAREAD-LAK 193 (351)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCSSHHHHHHHHHHHHH------------HHHHHHHHTTC-HHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-ccccCCCCcchHHHhhhhhHHHHHhhhcc------------cHHHHHHHhcc-HHH
Confidence 99999999999999999999997 89999999999999998888888876642 45666666554 356
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
+..++.... .....+..|.||||+|+..++.. ..++++. +++.+ .+++..+..|.||||+
T Consensus 194 ~~~~l~~~~-~~~~~~~~~~t~L~~A~~~~~~~--------------~~~~~~~----Ll~~g-~~~~~~~~~g~t~L~~ 253 (351)
T 3utm_A 194 VKKTLALEI-INFKQPQSHETALHCAVASLHPK--------------RKQVAEL----LLRKG-ANVNEKNKDFMTPLHV 253 (351)
T ss_dssp HHHHTTTCC-TTCCCTTTCCCHHHHHHHCCSTT--------------HHHHHHH----HHHTT-CCTTCCCTTCCCHHHH
T ss_pred HHHHHHhhc-ccccCCCCCCCHHHHHHHHhCcc--------------HHHHHHH----HHHcC-CCcCCcCCCCCCHHHH
Confidence 656655544 34457889999999999997532 3344444 44444 4556778899999999
Q ss_pred HHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCc
Q 044420 245 AAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSR 324 (545)
Q Consensus 245 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 324 (545)
|++.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||+|+|.. ++
T Consensus 254 A~~~g~~~~v~~Ll~~ga~-~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad----~~~~~~~g~tal~~a~~----~~ 324 (351)
T 3utm_A 254 AAERAHNDVMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSD----PSIISLQGFTAAQMGNE----AV 324 (351)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHSCH----HH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC----CCCcCCCCCChhhhhhH----HH
Confidence 9999999999999999999 999999999999999999999999999999999 77899999999999943 33
Q ss_pred cccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 325 VSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 325 ~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
+++|.+ .......++.+++..|+++
T Consensus 325 ~~~l~~----------------------~~~~~~~~~~~~l~~A~~~ 349 (351)
T 3utm_A 325 QQILSE----------------------STPMRTSDVDYRLLEASKA 349 (351)
T ss_dssp HHHHHH----------------------C------------------
T ss_pred HHHHHh----------------------ccccccCcceeehhhhhcc
Confidence 333321 1234566777888877664
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=323.05 Aligned_cols=226 Identities=20% Similarity=0.180 Sum_probs=164.3
Q ss_pred cccccCCHHhHHHHHcC-------------ChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCC
Q 044420 4 NVYLNICVPLQKAALKG-------------NWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g-------------~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~ 70 (545)
..+.+|+||||+|+..| +.++++.|++ .+ .+++...|..|+||||+|+..|+.+++++|++ .
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ 79 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--A 79 (253)
T ss_dssp --------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHH--T
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--cc-CCcccccCCCCCcHHHHHHHcCCHHHHHHHHH--c
Confidence 34567999999999977 8899999998 56 66665678889999999999999999999998 7
Q ss_pred CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 71 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
|++++.+|..|.||||+|+..|+.+++++|+++++...+.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 80 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-------- 151 (253)
T 1yyh_A 80 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN-------- 151 (253)
T ss_dssp TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--------
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--------
Confidence 889999999999999999999999999999998873347888899999999999999999999988877521
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
.
T Consensus 152 ---------------------------~---------------------------------------------------- 152 (253)
T 1yyh_A 152 ---------------------------A---------------------------------------------------- 152 (253)
T ss_dssp ---------------------------C----------------------------------------------------
T ss_pred ---------------------------C----------------------------------------------------
Confidence 1
Q ss_pred hhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCC
Q 044420 231 FTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQN 310 (545)
Q Consensus 231 ~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~ 310 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+
T Consensus 153 ---~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~d~~g~ 224 (253)
T 1yyh_A 153 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDHFAN----RDITDHMDR 224 (253)
T ss_dssp ---BCTTSCBHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTCC
T ss_pred ---cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----ccccccCCC
Confidence 224567888888888888899999999888 888889999999999999999999999999888 677889999
Q ss_pred ChhhhhccCCCCCcccccc
Q 044420 311 NMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 311 TpLh~A~~~~~~~~~~~L~ 329 (545)
||||+|++.|+.+++++|.
T Consensus 225 tpl~~A~~~g~~~i~~~l~ 243 (253)
T 1yyh_A 225 LPRDIAQERMHHDIVRLLD 243 (253)
T ss_dssp CHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHH
Confidence 9999999999988888774
|
| >2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-42 Score=346.10 Aligned_cols=276 Identities=17% Similarity=0.162 Sum_probs=203.9
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCC----Cc----------------hhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNED----PR----------------SILCAGIAKGYETLLHLAAGARQTGFVEELLKL 68 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~----~~----------------~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~ 68 (545)
-+.+|+.|+..|+.+.++.++++.. ++ .......+..|+||||+|+..++ +++++|++
T Consensus 37 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~- 114 (373)
T 2fo1_E 37 SQHSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITR- 114 (373)
T ss_dssp ---------------------------------------------------------CCCHHHHHHHSSS-CCCSCCST-
T ss_pred cccccccccCCccccchhhhhhhhccccCccccCCCCCccccccccccccccCCCCCCccHHHHHhcCCc-hHHHHhcc-
Confidence 4556777777777777776664110 00 01123567889999999999665 77777754
Q ss_pred CCCccccccc-CCCCcHHHHHHHhCCHHHHHHHH--------HcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHccc
Q 044420 69 MKPEDLTLQD-RNGNTAFCFAVAAGSIHIAKIML--------KKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAK 139 (545)
Q Consensus 69 ~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 139 (545)
.+++.+| ..|+||||+|+..|+.++++.|+ +.|+++ +.+|.+|.||||+|+..|+.+++++|+++|+
T Consensus 115 ---~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~v-n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga 190 (373)
T 2fo1_E 115 ---ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRRRLVAYLMKAGA 190 (373)
T ss_dssp ---TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC
T ss_pred ---ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCCCCCCHHHHHHHcChHHHHHHHHHCCC
Confidence 5788888 78999999999999998877776 789997 8999999999999999999999999999999
Q ss_pred CCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCC---CcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHH
Q 044420 140 AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHS---GLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLV 216 (545)
Q Consensus 140 ~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~---~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (545)
+++..+..|.||||+|+..+. .+ +.++|.+.+ .+++..|.+|.||||+|+..+...
T Consensus 191 ~~~~~~~~g~t~L~~A~~~g~-~~-~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~------------------- 249 (373)
T 2fo1_E 191 DPTIYNKSERSALHQAAANRD-FG-MMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRD------------------- 249 (373)
T ss_dssp CSCCCCTTCCCHHHHHHHTTC-HH-HHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTT-------------------
T ss_pred CCcccCCCCCCHHHHHHHCCC-HH-HHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcc-------------------
Confidence 999999999999999998765 34 455666655 788999999999999999887321
Q ss_pred HHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc--------ccccCCCcHHHHHHHhCchHHH
Q 044420 217 KSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH--------ELDDNNRSIFHIAVLHRHANIF 288 (545)
Q Consensus 217 ~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~--------~~d~~G~t~Lh~A~~~~~~~iv 288 (545)
+.+++++|+++|++ ++ .+|..|+||||+|+..|+.+++
T Consensus 250 ---------------------------------~~~~v~~Ll~~g~~-~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v 295 (373)
T 2fo1_E 250 ---------------------------------QVASAKLLVEKGAK-VDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295 (373)
T ss_dssp ---------------------------------HHHHHHHHHHHTCC-SSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHH
T ss_pred ---------------------------------hHHHHHHHHHCCCC-cccccccccCcccccCCCHHHHHHHhCCHHHH
Confidence 34567777777777 44 3788999999999999999999
Q ss_pred HHHHhhc-cchhhhhhcccCCCCChhhhhccCCCCCccccccc-------------hhHHhHHHHhHHHHHhhhh
Q 044420 289 NLIYEIG-FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG-------------AALQMHRELLWFKEVEKIV 349 (545)
Q Consensus 289 ~~Ll~~g-~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~-------------~~~~~~~~l~~~~~v~~l~ 349 (545)
++|++++ ++ +|.+|.+|+||||+|+..|+.+++++|.+ .+++.+......+.++.++
T Consensus 296 ~~Ll~~~~~~----~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 296 KYLVGEKGSN----KDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp HHHHHHSCCC----TTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcCCC----ccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999987 77 78899999999999999999999999853 3577777777777776665
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=325.62 Aligned_cols=250 Identities=18% Similarity=0.102 Sum_probs=182.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCc
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT 117 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 117 (545)
.+|.+|+||||+|++.|+.++|++|++ .+++ ++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~t 80 (282)
T 1oy3_D 4 YVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (282)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHh--cCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCC
Confidence 568889999999999999999999998 5665 7888888999999999999999999999999887 788889999
Q ss_pred HHHHHHHcCCHHHHHHHHHcccCCccC-------------CCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc
Q 044420 118 PLYMAAVLAQRDMALYLYDDAKAKDNL-------------TPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184 (545)
Q Consensus 118 pL~~A~~~g~~~iv~~Ll~~~~~~~~~-------------~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~ 184 (545)
|||+|+..|+.+++++|++++++.... ...+.++++.++..... ......+...+.+++.+|..|.
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 81 ALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPE-NEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCSSCCCC------------------------------------CCCGGGGTTCCCTTSC
T ss_pred HHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccc-hhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999888753221 12234455555544332 3445566667888999999999
Q ss_pred hHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc-CCChHHHHHHhcCcHHHHHHHHHHCCC
Q 044420 185 TALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR-KPSHLLFDAAELGNFEFLAELICSYPD 263 (545)
Q Consensus 185 tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~ 263 (545)
||||+|+..|+. ++++.|++... +++..+. .|.||||+|++.|+.+++++|+++|++
T Consensus 160 t~L~~A~~~g~~-----------------~~v~~Ll~~g~-----~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 160 TPLHVAVIHKDA-----------------EMVRLLRDAGA-----DLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp CHHHHHHHTTCH-----------------HHHHHHHHHTC-----CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHcCCH-----------------HHHHHHHHcCC-----CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999954 55555555443 3334443 499999999999999999999999999
Q ss_pred cccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCC
Q 044420 264 LVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPH 321 (545)
Q Consensus 264 ~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~ 321 (545)
++.+|..|+||||+|+.+++.+++++|+++|++ ++.+|.+|.|||++|.....
T Consensus 218 -~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 218 -PTARMYGGRTPLGSALLRPNPILARLLRAHGAP----EPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp -TTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCC----CCCCC---------------
T ss_pred -CcccccCCCCHHHHHHHcCCcHHHHHHHHcCCC----cCcCCCcccccccccCCccc
Confidence 999999999999999999999999999999999 78899999999999988653
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-41 Score=339.19 Aligned_cols=265 Identities=16% Similarity=0.098 Sum_probs=196.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..|.+|.||||+||..|+.++|++|++ .|++++.+|..|.||||+|+..|+.++|++|+++|++. .+.+|.||||
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~---~~~~g~t~L~ 89 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIE--TGVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVH---SLWHGQKPIH 89 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCC---CCBTTBCHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCc---cccCCCCHHH
Confidence 456667777777777777777777776 56777777777777777777777777777777777643 2345677777
Q ss_pred HHHHcCCHHHHHHHHHc----ccCCcc-----------------CCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc
Q 044420 121 MAAVLAQRDMALYLYDD----AKAKDN-----------------LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~----~~~~~~-----------------~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~ 179 (545)
+|+..|+.+++++|+++ |.+++. .+..|.||||+|+..+.....+.++|.+.|++++.+
T Consensus 90 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~ 169 (364)
T 3ljn_A 90 LAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAK 169 (364)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCccc
Confidence 77777777777777776 554443 455666777777666531234445555557778888
Q ss_pred CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH
Q 044420 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259 (545)
Q Consensus 180 d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 259 (545)
|..|.||||+|+..|+. ++++.|++...+....+++..|..|.||||+|+..|+.+++++|++
T Consensus 170 d~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 232 (364)
T 3ljn_A 170 DKADETPLMRAMEFRNR-----------------EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVE 232 (364)
T ss_dssp CTTSCCHHHHHHHTTCH-----------------HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT
T ss_pred CCCCCCHHHHHHHcCCH-----------------HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence 89999999999999844 5666666655543334467778899999999999999999999999
Q ss_pred HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhh--------hhcccCCCCChhhhhccCCCCCccccc
Q 044420 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM--------ATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 260 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~--------~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
+|++ ++.+|.+|+||||+|+..|+.+++++|+++|++.... ....+..|+|||+.|+..++.+.+..|
T Consensus 233 ~gad-~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~l 308 (364)
T 3ljn_A 233 MGID-VNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQL 308 (364)
T ss_dssp TTCC-TTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHHH
T ss_pred cCCC-CCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccchhhhhccCHHHHHHH
Confidence 9999 8999999999999999999999999999999875320 112678899999999999876665554
|
| >3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=323.72 Aligned_cols=246 Identities=15% Similarity=0.102 Sum_probs=185.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcC---------CCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLM---------KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG 112 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~---------~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~ 112 (545)
-...|.|+||+|+..|+.+.+..++... -...++.+|..|+||||+|+..|+.+++++|++.|+++ +.+|
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-~~~~ 89 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV-NIIT 89 (285)
T ss_dssp -------------------------------CCSEECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS-CEEC
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccchhhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcC
Confidence 4578999999999999987777765521 02235778999999999999999999999999999997 8899
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHh
Q 044420 113 GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLAR 192 (545)
Q Consensus 113 ~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~ 192 (545)
.+|.||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 90 ~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-----------------------------------~~~~~~g~t~L~~A~~ 134 (285)
T 3d9h_A 90 ADHVSPLHEACLGGHLSCVKILLKHGAQV-----------------------------------NGVTADWHTPLFNACV 134 (285)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCS-----------------------------------SCCCTTCCCHHHHHHH
T ss_pred CCCCCHHHHHHHCCcHHHHHHHHHCCCCC-----------------------------------CCCCCCCCCHHHHHHH
Confidence 99999999999999999999999998763 4556677777777777
Q ss_pred CCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCC
Q 044420 193 KPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNN 272 (545)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G 272 (545)
.|+. ++++.|++...+.+ .+.+|.||||+|+..|+.+++++|++++++ ++.+|.+|
T Consensus 135 ~~~~-----------------~~v~~Ll~~g~~~~------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~d~~g 190 (285)
T 3d9h_A 135 SGSW-----------------DCVNLLLQHGASVQ------PESDLASPIHEAARRGHVECVNSLIAYGGN-IDHKISHL 190 (285)
T ss_dssp HTCH-----------------HHHHHHHHTTCCSS------CSCTTSCHHHHHHHHTCHHHHHHHHHTTCC-TTCCBTTT
T ss_pred cCHH-----------------HHHHHHHHCCCCCC------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCC
Confidence 7643 44444444332222 235599999999999999999999999999 89999999
Q ss_pred CcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCc
Q 044420 273 RSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPT 352 (545)
Q Consensus 273 ~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~ 352 (545)
+||||+|+.+|+.+++++|+++|++ ++ .|..|+||||+|++.++.+++++|.+ .++
T Consensus 191 ~t~L~~A~~~~~~~~v~~Ll~~ga~----~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga 246 (285)
T 3d9h_A 191 GTPLYLACENQQRACVKKLLESGAD----VN-QGKGQDSPLHAVVRTASEELACLLMD-------------------FGA 246 (285)
T ss_dssp BCHHHHHHHTTCHHHHHHHHHTTCC----TT-CCBTTBCHHHHHHHTTCHHHHHHHHH-------------------TTC
T ss_pred CCHHHHHHHcCcHHHHHHHHHCCCC----CC-CCCCCCCHHHHHHHcCCHHHHHHHHH-------------------CCC
Confidence 9999999999999999999999998 55 48999999999999999998887743 378
Q ss_pred cccccCCCCCChhhhhHhh
Q 044420 353 FREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 353 ~~~~~n~~G~Tpl~~a~~~ 371 (545)
+++.+|.+|+||+|+|.++
T Consensus 247 d~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 247 DTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp CTTCCCTTSCCGGGGSCTT
T ss_pred CCCCcCCCCCCHHHHhcCc
Confidence 8999999999999999843
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-40 Score=311.56 Aligned_cols=226 Identities=19% Similarity=0.150 Sum_probs=163.6
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCC
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGN--EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
.+.+|+||||+||+.|+.+++++|++. ..+ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 5 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~ 80 (241)
T 1k1a_A 5 ADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGG-RELD-IYNNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQ 80 (241)
T ss_dssp --CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT-CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSC
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcC-CCCC-cccccCCCHHHHHHHcCCHHHHHHHHH--cCCCccccCCCCC
Confidence 345566666666666666666666640 022 2332 455666666666666666666666666 5666666666666
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCc----ccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 83 TAFCFAVAAGSIHIAKIMLKKNE----RLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 83 TpLh~A~~~g~~~iv~~Ll~~~~----~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
||||+|+..|+.+++++|++.++ ++ +..|..|.||||+|+..|+.+++++|+++|++++
T Consensus 81 t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~---------------- 143 (241)
T 1k1a_A 81 TAAHLACEHRSPTCLRALLDSAAPGTLDL-EARNYDGLTALHVAVNTECQETVQLLLERGADID---------------- 143 (241)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHSCTTSCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT----------------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCccccc-cccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc----------------
Confidence 66666666666666666666665 43 5566666666666666666666666666655411
Q ss_pred cCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc-cC
Q 044420 159 TDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI-RK 237 (545)
Q Consensus 159 ~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~ 237 (545)
..+ ..
T Consensus 144 --------------------------------------------------------------------------~~~~~~ 149 (241)
T 1k1a_A 144 --------------------------------------------------------------------------AVDIKS 149 (241)
T ss_dssp --------------------------------------------------------------------------CCCTTT
T ss_pred --------------------------------------------------------------------------cccccC
Confidence 112 45
Q ss_pred CChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhc
Q 044420 238 PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAA 317 (545)
Q Consensus 238 g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~ 317 (545)
|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 150 g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~ 224 (241)
T 1k1a_A 150 GRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD----SSLKNCHNDTPLMVAR 224 (241)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCS
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCC----CCCcCCCCCCHHHHHH
Confidence 78999999999999999999999999 899999999999999999999999999999999 7889999999999999
Q ss_pred cCCCCCccccccc
Q 044420 318 KSPHPSRVSIVSG 330 (545)
Q Consensus 318 ~~~~~~~~~~L~~ 330 (545)
..|+.++++.|.+
T Consensus 225 ~~~~~~i~~~l~~ 237 (241)
T 1k1a_A 225 SRRVIDILRGKAT 237 (241)
T ss_dssp SHHHHHHHTC---
T ss_pred hcCcHHHHhhhcc
Confidence 9999999888753
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-40 Score=320.36 Aligned_cols=217 Identities=14% Similarity=0.187 Sum_probs=167.0
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhh-------hhccCCCCCcHHHHHHHcCCH-HHHHHHHHcCCCcccc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSIL-------CAGIAKGYETLLHLAAGARQT-GFVEELLKLMKPEDLT 75 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~-------~~~~~~~g~T~Lh~A~~~g~~-~~v~~Ll~~~~~~~~~ 75 (545)
..+.++.+||+.||+.|+.++|++|++ .+ ... .+..+..|.||||.|+..++. +++++|++ .|+++|
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~--~~-~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~--~Gadvn 80 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE--WT-EEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPA--SGLGVN 80 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT--CC-------------------------------------------CCCCTT
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH--CC-CcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHH--CCCCCC
Confidence 455668899999999999999999998 33 221 235677899999999998876 48899998 899999
Q ss_pred cccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 76 LQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 76 ~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
.+|.+|+||||+|+..|+.++|++|++.|+++ +.++.+|.||+|+|+..++.+++++|+++|++++
T Consensus 81 ~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~-~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n------------- 146 (269)
T 4b93_B 81 VTSQDGSSPLHVAALHGRADLIPLLLKHGANA-GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN------------- 146 (269)
T ss_dssp CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC-------------
T ss_pred CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCc-CccCCCCCCccccccccChHHHHHHHHHCCCCCC-------------
Confidence 99999999999999999999999999999997 8899999999999999999999999999887522
Q ss_pred HHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc
Q 044420 156 CISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI 235 (545)
Q Consensus 156 a~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 235 (545)
.+ |
T Consensus 147 ----------------------~~-------------------------------------------------------d 149 (269)
T 4b93_B 147 ----------------------KK-------------------------------------------------------D 149 (269)
T ss_dssp ----------------------CC-------------------------------------------------------C
T ss_pred ----------------------CC-------------------------------------------------------C
Confidence 22 2
Q ss_pred cCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhh
Q 044420 236 RKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHL 315 (545)
Q Consensus 236 ~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~ 315 (545)
..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.++|++|+++|++ +|.+|.+|+||||+
T Consensus 150 ~~g~TpL~~A~~~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad----~~~~d~~G~TpL~~ 224 (269)
T 4b93_B 150 LSGNTPLIYACSGGHHELVALLLQHGAS-INASNNKGNTALHEAVIEKHVFVVELLLLHGAS----VQVLNKRQRTAVDC 224 (269)
T ss_dssp TTCCCHHHHHHHTTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCSGGG
T ss_pred CCCCCHHHHHHHCCCHHHHHHHHHCCCC-CCccccCCCcHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCHHHH
Confidence 4567788888888888999999999999 999999999999999999999999999999999 78899999999999
Q ss_pred hccCCC
Q 044420 316 AAKSPH 321 (545)
Q Consensus 316 A~~~~~ 321 (545)
|+++++
T Consensus 225 A~~~~~ 230 (269)
T 4b93_B 225 AEQNSK 230 (269)
T ss_dssp SCTTCH
T ss_pred HHhCCc
Confidence 998764
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-40 Score=307.99 Aligned_cols=222 Identities=20% Similarity=0.235 Sum_probs=181.5
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..+.+|||.||+.|+.+.++.+++ ..+ .. .+..+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 4 ~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 78 (231)
T 3aji_A 4 CVSNIMICNLAYSGKLDELKERIL-ADK-SL-ATRTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLH 78 (231)
T ss_dssp CCSSSHHHHHHHHTCHHHHHHHHH-HCG-GG-GGCCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHH
T ss_pred ccccchHHHHHHhCCHHHHHHHHH-hch-hh-hhcCCCCCCCHHHHHHHcCcHHHHHHHHH--hCCCCCCcCCCCCCHHH
Confidence 357899999999999999999998 444 44 44788999999999999999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 79 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~------------------------ 133 (231)
T 3aji_A 79 IAASAGXDEIVKALLVKGAHV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD------------------------ 133 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT------------------------
T ss_pred HHHHcCHHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC------------------------
Confidence 999999999999999999997 8899999999999999999999999999887522
Q ss_pred HHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHH
Q 044420 167 KLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAA 246 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~ 246 (545)
.+| ..|.||||+|+
T Consensus 134 -----------~~~-------------------------------------------------------~~g~t~L~~A~ 147 (231)
T 3aji_A 134 -----------AKD-------------------------------------------------------HYDATAMHRAA 147 (231)
T ss_dssp -----------CCC-------------------------------------------------------TTSCCHHHHHH
T ss_pred -----------CcC-------------------------------------------------------CCCCcHHHHHH
Confidence 222 34566666677
Q ss_pred hcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccc
Q 044420 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 247 ~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
..|+.+++++|++++++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||||+|+..++.++++
T Consensus 148 ~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 148 AKGNLKMVHILLFYKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS----IYIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HcCCHHHHHHHHhcCCC-ccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHhhHHHHHHH
Confidence 77777777777777777 677777777777777777777777777777776 5667777777777777766666666
Q ss_pred ccc
Q 044420 327 IVS 329 (545)
Q Consensus 327 ~L~ 329 (545)
+|.
T Consensus 223 lL~ 225 (231)
T 3aji_A 223 LAE 225 (231)
T ss_dssp HHH
T ss_pred HHc
Confidence 553
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-39 Score=306.22 Aligned_cols=218 Identities=18% Similarity=0.175 Sum_probs=137.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.|.+|.||||+|+..|+.+++++|++ .|++++..|..|.||||+|+..|+.+++++|+++|+++ +.++..|.||||+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQ--AGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALV-DPKDAEGSTCLHL 83 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCC-CCCCTTSCCHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHH--cCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCC-CCCCCCCCcHHHH
Confidence 34445555555555555555555554 44445554555555555555555555555555555443 4444445555555
Q ss_pred HHHcCCHHHHHHHHHccc-CCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 122 AAVLAQRDMALYLYDDAK-AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~-~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
|+..|+.+++++|++++. + ++..|..|.||||+|+..++.
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~-----------------------------------~~~~~~~g~t~L~~A~~~~~~---- 124 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMD-----------------------------------VNCQDDGGWTPMIWATEYKHV---- 124 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCC-----------------------------------TTCCCTTSCCHHHHHHHTTCH----
T ss_pred HHHcCCHHHHHHHHhCCCCC-----------------------------------cccCCCCCCCHHHHHHHcCCH----
Confidence 555555555555554442 2 122233333344444333321
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
+++ +.+++.+ .+.+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+
T Consensus 125 -------------~~~----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~ 185 (237)
T 3b7b_A 125 -------------DLV----KLLLSKG-SDINIRDNEENICLHWAAFSGCVDIAEILLAAKCD-LHAVNIHGDSPLHIAA 185 (237)
T ss_dssp -------------HHH----HHHHHTT-CCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHH
T ss_pred -------------HHH----HHHHHCC-CCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence 111 1122222 22233446778999999999999999999999999 8999999999999999
Q ss_pred HhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCc
Q 044420 281 LHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSR 324 (545)
Q Consensus 281 ~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~ 324 (545)
..++.+++++|+++|++ ++.+|.+|+||||+|+..++.+.
T Consensus 186 ~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~~~~~~~ 225 (237)
T 3b7b_A 186 RENRYDCVVLFLSRDSD----VTLKNKEGETPLQCASLNSQVWS 225 (237)
T ss_dssp HTTCHHHHHHHHTTTCC----TTCCCTTSCCHHHHSCTTCHHHH
T ss_pred HhCCHhHHHHHHHcCCC----CCccCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999 78899999999999999987643
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-39 Score=300.21 Aligned_cols=210 Identities=18% Similarity=0.188 Sum_probs=183.0
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--ccccc-ccCCCCcHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP--EDLTL-QDRNGNTAF 85 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~--~~~~~-~d~~g~TpL 85 (545)
|+||||.||+.|+.++++.|++ .+ .......|..|+||||+|+..|+.+++++|++ .+ .+++. .|..|.|||
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~g~t~L 76 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPF 76 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TCTTCCGGGCCCTTSCCHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cC-ccccccCCCCCCCHHHHHHHcCCHHHHHHHHh--ccccccccccCCCCCCCHH
Confidence 6899999999999999999998 44 45554678899999999999999999999999 56 66666 788999999
Q ss_pred HHHHHhCCHHHHHHHHHcC--cccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 86 CFAVAAGSIHIAKIMLKKN--ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
|+|+..|+.+++++|+++| +++ +.++..|.||||+|+..|+.+++++|+++|++++
T Consensus 77 ~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--------------------- 134 (228)
T 2dzn_A 77 HIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--------------------- 134 (228)
T ss_dssp HHHHHHCCHHHHHHHHSSSSCCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC---------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCccc-ccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc---------------------
Confidence 9999999999999999998 776 7888999999999999999999999998887521
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
. .+..|.||||
T Consensus 135 --------------~-------------------------------------------------------~~~~g~t~L~ 145 (228)
T 2dzn_A 135 --------------I-------------------------------------------------------KDKFNQIPLH 145 (228)
T ss_dssp --------------C-------------------------------------------------------CCTTSCCHHH
T ss_pred --------------c-------------------------------------------------------cCCCCCCHHH
Confidence 1 1245688888
Q ss_pred HHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHHhCchHHHHHHH-hhccchhhhhhcccCCCCChhhhhccC
Q 044420 244 DAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVLHRHANIFNLIY-EIGFTKELMATFKDHDQNNMLHLAAKS 319 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll-~~g~~~~~~~n~~d~~G~TpLh~A~~~ 319 (545)
+|+..|+.+++++|++.+ .+ ++.+|..|+||||+|+..++.+++++|+ +.|++ ++.+|.+|+||||+|++.
T Consensus 146 ~A~~~~~~~~v~~Ll~~g~~~-~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~----~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 146 RAASVGSLKLIELLCGLGKSA-VNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAE----YDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHHTTCHHHHHHHHTTTCCC-SCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCC----SCCBCTTSCBGGGGCSST
T ss_pred HHHHcCCHHHHHHHHhcCccc-ccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCC----CCccCCCCCcHHHHHHHH
Confidence 888889999999999999 66 8999999999999999999999999999 88998 788999999999999875
|
| >3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-39 Score=303.61 Aligned_cols=221 Identities=18% Similarity=0.236 Sum_probs=197.6
Q ss_pred cccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 72 ~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +..+..|.||||+|+..|+.+++++|+++|++
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~----------- 69 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANI-DTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL----------- 69 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC-----------
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCc-CccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC-----------
Confidence 467889999999999999999999999999999997 88999999999999999999999999998875
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhh
Q 044420 152 LFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEF 231 (545)
Q Consensus 152 l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 231 (545)
++.++..|.||||+|+..|+. .+++.+++.++.+.
T Consensus 70 ------------------------~~~~~~~g~t~L~~A~~~~~~---------------------~~~~~Ll~~~~~~~ 104 (237)
T 3b7b_A 70 ------------------------VDPKDAEGSTCLHLAAKKGHY---------------------EVVQYLLSNGQMDV 104 (237)
T ss_dssp ------------------------CCCCCTTSCCHHHHHHHTTCH---------------------HHHHHHHTTTCCCT
T ss_pred ------------------------CCCCCCCCCcHHHHHHHcCCH---------------------HHHHHHHhCCCCCc
Confidence 345667788888888888854 23566666665666
Q ss_pred hhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCC
Q 044420 232 TDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNN 311 (545)
Q Consensus 232 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~T 311 (545)
+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+|
T Consensus 105 ~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~----~~~~~~~g~t 179 (237)
T 3b7b_A 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFSGCVDIAEILLAAKCD----LHAVNIHGDS 179 (237)
T ss_dssp TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCC----TTCCCTTCCC
T ss_pred ccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC----CCCcCCCCCC
Confidence 77788999999999999999999999999999 899999999999999999999999999999998 7889999999
Q ss_pred hhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 312 MLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 312 pLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
|||+|++.++.+++++|.+ .+++++.+|++|+||+|+|++..+
T Consensus 180 ~L~~A~~~~~~~~v~~Ll~-------------------~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 180 PLHIAARENRYDCVVLFLS-------------------RDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHHHHHHTTCHHHHHHHHT-------------------TTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHHHHHhCCHhHHHHHHH-------------------cCCCCCccCCCCCCHHHHHHHHHH
Confidence 9999999999988877743 378899999999999999987654
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-40 Score=321.20 Aligned_cols=264 Identities=17% Similarity=0.139 Sum_probs=219.5
Q ss_pred HHHHcCChHHHHHhhcCCCCchhh-------hhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 15 KAALKGNWPTAKHLLGNEDPRSIL-------CAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~~~~~~~~~-------~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.+++.|..+.++.++. ... ... ....+..|.||||.||..|+.++|++|++ .|++++.+|..|.||||+
T Consensus 4 ~~a~~~~~~~l~~~~~-~~~-~~~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 79 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIG-SET-DLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQ 79 (299)
T ss_dssp HHHHHHHHHHHHHHHH-TTT-SSCCSCCCCSCCCCEECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHH
T ss_pred hHHHHHHHHHHHHHHc-ccc-ccccccccCcccccccCCccHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHH
Confidence 5778888888888887 221 100 11234467899999999999999999999 789999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..+ ..+.+..
T Consensus 80 A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~-~~~~~~~ 157 (299)
T 1s70_B 80 ACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEA-MEELLQN 157 (299)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHH-HHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcc-hHHHHHH
Confidence 99999999999999999997 889999999999999999999999999999998888999999999987654 4467777
Q ss_pred HHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh
Q 044420 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE 247 (545)
Q Consensus 168 lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~ 247 (545)
++...+.+++..+..+.++++..+ ..++..+.......+..|.||||+|+.
T Consensus 158 ll~~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~l~~~~~~~~~~~~~g~t~L~~A~~ 208 (299)
T 1s70_B 158 EVNRQGVDIEAARKEEERIMLRDA-----------------------------RQWLNSGHINDVRHAKSGGTALHVAAA 208 (299)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHH-----------------------------HHHHHHTCCCCCCCTTTCCCHHHHHHH
T ss_pred HHhhcCCCchhhhhhhhhHHHHHH-----------------------------HHHHhccCcchhhhcCCCCCHHHHHHH
Confidence 787777776655554444443321 112222223333455789999999999
Q ss_pred cCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhcc
Q 044420 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318 (545)
Q Consensus 248 ~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~ 318 (545)
.|+.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|++ ++.+|..|+||||+|++
T Consensus 209 ~g~~~~v~~Ll~~g~d-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad----~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 209 KGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD----MEAVNKVGQTAFDVADE 274 (299)
T ss_dssp HTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----TTCCCTTSCCTTTSCCS
T ss_pred CCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999 78899999999999976
|
| >3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-39 Score=326.94 Aligned_cols=260 Identities=13% Similarity=-0.013 Sum_probs=225.6
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|.||||+||..|+.++|++|++ .+ .+++ ..|..|.||||+|+..|+.++|++|++ .+++++ +.+|.|
T Consensus 15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~--~g-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~--~~~g~t 86 (364)
T 3ljn_A 15 KSDDENMEKIHVAARKGQTDEVRRLIE--TG-VSPT-IQNRFGCTALHLACKFGCVDTAKYLAS--VGEVHS--LWHGQK 86 (364)
T ss_dssp -CCHHHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHHCCHHHHHHHHH--HCCCCC--CBTTBC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCcc-ccCCCCCcHHHHHHHcCCHHHHHHHHH--CCCCcc--ccCCCC
Confidence 356679999999999999999999999 66 6665 789999999999999999999999999 677544 457999
Q ss_pred HHHHHHHhCCHHHHHHHHHc----CcccccC-----------------CCCCCCcHHHHHHHcC--CHHHHHHHHHcccC
Q 044420 84 AFCFAVAAGSIHIAKIMLKK----NERLLTM-----------------RGGENMTPLYMAAVLA--QRDMALYLYDDAKA 140 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~----~~~~~~~-----------------~~~~g~tpL~~A~~~g--~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|++. |+++ +. +|..|.||||+|+..| +.+++++|+++|++
T Consensus 87 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~ 165 (364)
T 3ljn_A 87 PIHLAVMANKTDLVVALVEGAKERGQMP-ESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGAS 165 (364)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHTCCH-HHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHhccccCCCH-HHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence 99999999999999999998 6664 44 7889999999999999 99999999999999
Q ss_pred CccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCc-----ccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHH
Q 044420 141 KDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGL-----AVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQL 215 (545)
Q Consensus 141 ~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~-----~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (545)
++..+..|.||||+|+..+.. .+.++|.+.+.+ ++.+|..|.||||+|+..|+. +
T Consensus 166 ~~~~d~~g~t~L~~A~~~g~~--~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~- 225 (364)
T 3ljn_A 166 PTAKDKADETPLMRAMEFRNR--EALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWE-----------------D- 225 (364)
T ss_dssp TTCCCTTSCCHHHHHHHTTCH--HHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCH-----------------H-
T ss_pred CcccCCCCCCHHHHHHHcCCH--HHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCH-----------------H-
Confidence 999999999999999987653 555666666666 999999999999999999965 3
Q ss_pred HHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc------------ccccCCCcHHHHHHHhC
Q 044420 216 VKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH------------ELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 216 ~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~------------~~d~~G~t~Lh~A~~~~ 283 (545)
+++.|++.+ .+++..|..|.||||+|+..|+.+++++|++++++ ++ ..+..|+||+++|+..+
T Consensus 226 ---~v~~Ll~~g-ad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 226 ---VAMRFVEMG-IDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDV-FLIQACPYHNGTTVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp ---HHHHHHTTT-CCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCH-HHHHTCTTBSSSSBCGGGCCCCTTSCSSCCH
T ss_pred ---HHHHHHHcC-CCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCc-hhhhcCcccCcccccccccccccchhhhhcc
Confidence 355566665 56677889999999999999999999999999876 32 25778999999999999
Q ss_pred chHHHHHHHhhccc
Q 044420 284 HANIFNLIYEIGFT 297 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~ 297 (545)
+.+.+..|++.+.+
T Consensus 301 ~~~~v~~ll~~~~~ 314 (364)
T 3ljn_A 301 SKQEVLQLLQEKLD 314 (364)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99888888888766
|
| >1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-39 Score=311.12 Aligned_cols=253 Identities=15% Similarity=0.094 Sum_probs=186.9
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHcCccc--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL--LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 74 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
++.+|.+|+||||+|+..|+.++|++|+++|++. .+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tp 81 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA 81 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence 4678999999999999999999999999998872 38899999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCcccc-------------cCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHH
Q 044420 152 LFFTCISTDLHDLALKLLEDHSGLAVA-------------RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKS 218 (545)
Q Consensus 152 l~~aa~~~~~~~~~~~lL~~~~~~~~~-------------~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (545)
||+|+..+.. .+.++|.+.+..... ....+.++++.++..+....
T Consensus 82 L~~A~~~~~~--~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------- 139 (282)
T 1oy3_D 82 LHLACRVRAH--TCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENE-------------------- 139 (282)
T ss_dssp HHHHTTTTCH--HHHHHHSSSCCSSCCCC---------------------------------------------------
T ss_pred HHHHHHcCCc--chhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchh--------------------
Confidence 9999987653 455666665544321 22344556665554442210
Q ss_pred HHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccC-CCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 219 LWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN-NRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 219 l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~-G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
....+.. ...+.+..+..|.||||+|+..|+.+++++|+++|++ ++.++.. |+||||+|+.+|+.+++++|+++|++
T Consensus 140 ~~~~~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad 217 (282)
T 1oy3_D 140 EEPRDED-WRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD 217 (282)
T ss_dssp ----CCC-GGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred hhhhhhh-hhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1111111 2255667788999999999999999999999999999 8888854 99999999999999999999999999
Q ss_pred hhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 298 ~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
++.+|..|+||||+|+..++.+++++|.+ .|++++.+|.+|+||+++|.....
T Consensus 218 ----~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 218 ----PTARMYGGRTPLGSALLRPNPILARLLRA-------------------HGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp ----TTCCCTTSCCHHHHHHTSSCHHHHHHHHH-------------------TTCCCCCCC---------------
T ss_pred ----CcccccCCCCHHHHHHHcCCcHHHHHHHH-------------------cCCCcCcCCCcccccccccCCccc
Confidence 78899999999999999999999888743 388999999999999999986554
|
| >1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-39 Score=309.81 Aligned_cols=217 Identities=19% Similarity=0.208 Sum_probs=161.3
Q ss_pred ccCCCCCcHHHHHHHcC-------------CHHHHHHHHHcCCCccccc-ccCCCCcHHHHHHHhCCHHHHHHHHHcCcc
Q 044420 41 GIAKGYETLLHLAAGAR-------------QTGFVEELLKLMKPEDLTL-QDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g-------------~~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~ 106 (545)
.+|.+|+||||+|+..| +.+++++|++ .|++++. .|..|.||||+|+..|+.+++++|+++|++
T Consensus 5 ~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~ 82 (253)
T 1yyh_A 5 VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASAD 82 (253)
T ss_dssp -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHH--ccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC
Confidence 67889999999999977 8899999998 6887754 588899999999999999999999999998
Q ss_pred cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchH
Q 044420 107 LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETA 186 (545)
Q Consensus 107 ~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tp 186 (545)
+ +.+|..|.||||+|+..|+.+++++|+++++. +++
T Consensus 83 ~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~----------------------------------~~~--------- 118 (253)
T 1yyh_A 83 A-NIQDNMGRTPLHAAVSADAQGVFQILIRNRAT----------------------------------DLD--------- 118 (253)
T ss_dssp T-TCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS----------------------------------CTT---------
T ss_pred C-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----------------------------------Ccc---------
Confidence 7 88899999999999999999999999988752 011
Q ss_pred HHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc
Q 044420 187 LHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH 266 (545)
Q Consensus 187 Lh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~ 266 (545)
..+..|.||||+|+..|+.+++++|+++|++ ++
T Consensus 119 ----------------------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~ 151 (253)
T 1yyh_A 119 ----------------------------------------------ARMHDGTTPLILAARLAVEGMLEDLINSHAD-VN 151 (253)
T ss_dssp ----------------------------------------------CCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC-TT
T ss_pred ----------------------------------------------ccCCCCCcHHHHHHHcChHHHHHHHHHcCCC-CC
Confidence 1225678888888888899999999999999 99
Q ss_pred ccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHh
Q 044420 267 ELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVE 346 (545)
Q Consensus 267 ~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~ 346 (545)
.+|..|+||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|++.|+.+++++|.+
T Consensus 152 ~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~---------------- 211 (253)
T 1yyh_A 152 AVDDLGKSALHWAAAVNNVDAAVVLLKNGAN----KDMQNNREETPLFLAAREGSYETAKVLLD---------------- 211 (253)
T ss_dssp CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHHH----------------
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHCCCHHHHHHHHH----------------
Confidence 9999999999999999999999999999999 78899999999999999999998888743
Q ss_pred hhhcCccccccCCCCCChhhhhHhhhh
Q 044420 347 KIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 347 ~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
.+++++.+|..|+||+|+|+++..
T Consensus 212 ---~ga~~~~~d~~g~tpl~~A~~~g~ 235 (253)
T 1yyh_A 212 ---HFANRDITDHMDRLPRDIAQERMH 235 (253)
T ss_dssp ---TTCCTTCCCTTCCCHHHHHHHTTC
T ss_pred ---cCCCccccccCCCCHHHHHHHcCC
Confidence 378899999999999999987654
|
| >1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=299.15 Aligned_cols=221 Identities=16% Similarity=0.116 Sum_probs=194.9
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKL--MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 118 (545)
.+|.+|+||||+||+.|+.+++++|++. ..+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 82 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTA 82 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCH
Confidence 6789999999999999999999999961 158899999999999999999999999999999999997 8899999999
Q ss_pred HHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 119 LYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 119 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
||+|+..|+.+++++|+++++.. +
T Consensus 83 l~~A~~~~~~~~~~~Ll~~~~~~-------------------------------~------------------------- 106 (241)
T 1k1a_A 83 AHLACEHRSPTCLRALLDSAAPG-------------------------------T------------------------- 106 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCTT-------------------------------S-------------------------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCc-------------------------------c-------------------------
Confidence 99999999999999999988630 0
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccc-cCCCcHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELD-DNNRSIFH 277 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d-~~G~t~Lh 277 (545)
.+.+..+..|.||||+|+..|+.+++++|+++|++ ++..| ..|+||||
T Consensus 107 ------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~~g~t~L~ 155 (241)
T 1k1a_A 107 ------------------------------LDLEARNYDGLTALHVAVNTECQETVQLLLERGAD-IDAVDIKSGRSPLI 155 (241)
T ss_dssp ------------------------------CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTTCCCHHH
T ss_pred ------------------------------ccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC-cccccccCCCcHHH
Confidence 01112236678999999999999999999999999 78888 88999999
Q ss_pred HHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCcccccc
Q 044420 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMK 357 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~ 357 (545)
+|+.+|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|.+ .+++++.+
T Consensus 156 ~A~~~~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~ 212 (241)
T 1k1a_A 156 HAVENNSLSMVQLLLQHGAN----VNAQMYSGSSALHSASGRGLLPLVRTLVR-------------------SGADSSLK 212 (241)
T ss_dssp HHHHTTCHHHHHHHHHTTCC----TTCBCTTSCBHHHHHHHHTCHHHHHHHHH-------------------TTCCTTCC
T ss_pred HHHHcCCHHHHHHHHHcCCC----CCCcCCCCCCHHHHHHHcCCHHHHHHHHh-------------------cCCCCCCc
Confidence 99999999999999999998 78899999999999999999998887743 37889999
Q ss_pred CCCCCChhhhhHhhh
Q 044420 358 NSEGKTPRELFSIEH 372 (545)
Q Consensus 358 n~~G~Tpl~~a~~~~ 372 (545)
|.+|+||+|+|.+..
T Consensus 213 ~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 213 NCHNDTPLMVARSRR 227 (241)
T ss_dssp CTTSCCTTTTCSSHH
T ss_pred CCCCCCHHHHHHhcC
Confidence 999999999998654
|
| >2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-38 Score=293.97 Aligned_cols=213 Identities=19% Similarity=0.172 Sum_probs=184.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccc-ccccCCCCcHHHHHHHhCCHHHHHHHHHcC--cccccCCCCCCCcHHHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDL-TLQDRNGNTAFCFAVAAGSIHIAKIMLKKN--ERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~-~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~--~~~~~~~~~~g~tpL~~A 122 (545)
|+||||.|++.|+.+++++|++ .+.++ +.+|..|.||||+|+..|+.+++++|+++| +++....+..|.||||+|
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A 79 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLH--SKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIA 79 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHH--HCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHh--cCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHH
Confidence 7899999999999999999999 45554 458999999999999999999999999999 665333889999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|+++|.+ .+++
T Consensus 80 ~~~~~~~~~~~Ll~~g~~---------------------------------~~~~------------------------- 101 (228)
T 2dzn_A 80 CSVGNLEVVKSLYDRPLK---------------------------------PDLN------------------------- 101 (228)
T ss_dssp HHHCCHHHHHHHHSSSSC---------------------------------CCTT-------------------------
T ss_pred HHcCCHHHHHHHHhCCCC---------------------------------cccc-------------------------
Confidence 999999999999998742 0111
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 102 ------------------------------~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 150 (228)
T 2dzn_A 102 ------------------------------KITNQGVTCLHLAVGKKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAASV 150 (228)
T ss_dssp ------------------------------CCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHT
T ss_pred ------------------------------cCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHHHc
Confidence 1235678888888899999999999999999 899999999999999999
Q ss_pred CchHHHHHHHhhc-cchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCC
Q 044420 283 RHANIFNLIYEIG-FTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEG 361 (545)
Q Consensus 283 ~~~~iv~~Ll~~g-~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G 361 (545)
|+.+++++|+++| .+ +|.+|..|+||||+|+..++.+++++|.+ ..|++++.+|.+|
T Consensus 151 ~~~~~v~~Ll~~g~~~----~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------------------~~ga~~~~~~~~g 208 (228)
T 2dzn_A 151 GSLKLIELLCGLGKSA----VNWQDKQGWTPLFHALAEGHGDAAVLLVE------------------KYGAEYDLVDNKG 208 (228)
T ss_dssp TCHHHHHHHHTTTCCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHH------------------HHCCCSCCBCTTS
T ss_pred CCHHHHHHHHhcCccc----ccCcCCCCCCHHHHHHHcCCHHHHHHHHH------------------hcCCCCCccCCCC
Confidence 9999999999999 77 78899999999999999999998887741 1278899999999
Q ss_pred CChhhhhHhh
Q 044420 362 KTPRELFSIE 371 (545)
Q Consensus 362 ~Tpl~~a~~~ 371 (545)
+||+++|.++
T Consensus 209 ~t~l~~A~~~ 218 (228)
T 2dzn_A 209 AKAEDVALNE 218 (228)
T ss_dssp CBGGGGCSST
T ss_pred CcHHHHHHHH
Confidence 9999999754
|
| >3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-37 Score=290.77 Aligned_cols=216 Identities=17% Similarity=0.164 Sum_probs=193.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+..++||||.|++.|+.+.++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 80 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIA 80 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHh-chhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCC-CCcCCCCCCHHHHH
Confidence 45688999999999999999999985 56668889999999999999999999999999999997 88999999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|+++|++++ .
T Consensus 81 ~~~~~~~~v~~Ll~~g~~~~-----------------------------------~------------------------ 101 (231)
T 3aji_A 81 ASAGXDEIVKALLVKGAHVN-----------------------------------A------------------------ 101 (231)
T ss_dssp HHHTCHHHHHHHHHTTCCTT-----------------------------------C------------------------
T ss_pred HHcCHHHHHHHHHHcCCCCC-----------------------------------C------------------------
Confidence 99999999999999887521 1
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..
T Consensus 102 -------------------------------~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~ 149 (231)
T 3aji_A 102 -------------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYDATAMHRAAAK 149 (231)
T ss_dssp -------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred -------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence 124568888888888999999999999999 899999999999999999
Q ss_pred CchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCC
Q 044420 283 RHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGK 362 (545)
Q Consensus 283 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~ 362 (545)
|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.+ .+++++.+|.+|+
T Consensus 150 ~~~~~v~~Ll~~g~~----~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-------------------~ga~~~~~~~~g~ 206 (231)
T 3aji_A 150 GNLKMVHILLFYKAS----TNIQDTEGNTPLHLACDEERVEEAKFLVT-------------------QGASIYIENKEEK 206 (231)
T ss_dssp TCHHHHHHHHHTTCC----SCCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------TTCCSCCCCTTSC
T ss_pred CCHHHHHHHHhcCCC----ccccCCCCCCHHHHHHHCCCHHHHHHHHH-------------------CCCCCCCCCCCCC
Confidence 999999999999998 78899999999999999999998887743 3788999999999
Q ss_pred ChhhhhHhhhhh
Q 044420 363 TPRELFSIEHSS 374 (545)
Q Consensus 363 Tpl~~a~~~~~~ 374 (545)
||+++|.+.+..
T Consensus 207 t~l~~A~~~~~~ 218 (231)
T 3aji_A 207 TPLQVAKGGLGL 218 (231)
T ss_dssp CHHHHSCHHHHH
T ss_pred CHHHHHHhhHHH
Confidence 999999876543
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-37 Score=301.89 Aligned_cols=234 Identities=9% Similarity=-0.014 Sum_probs=191.9
Q ss_pred HHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHH
Q 044420 17 ALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHI 96 (545)
Q Consensus 17 a~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~i 96 (545)
++..+.+.++.++. .. ++ +.+|.+|+||||+|+..|+.+++++|++ .|++++.+| |.||||+|+..|+.++
T Consensus 7 i~~~~~~~v~~lL~-~~---~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~--g~t~L~~A~~~g~~~~ 77 (285)
T 3kea_A 7 INTWKSKQLKSFLS-SK---DT-FKADVHGHSASYYAIADNNVRLVCTLLN--AGALKNLLE--NEFPLHQAATLEDTKI 77 (285)
T ss_dssp GGGCCHHHHHHHHH-ST---TT-TCCCTTSCCHHHHHHHTTCHHHHHHHHH--TTGGGSCCT--TCCHHHHHTTSSSCHH
T ss_pred HHhcCHHHHHHHHH-hC---CC-CccCCCCCCHHHHHHHcCCHHHHHHHHh--CCCCCCCCC--CCCHHHHHHHcCCHHH
Confidence 45566666666666 22 23 3789999999999999999999999999 799999884 9999999999999999
Q ss_pred HHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcc
Q 044420 97 AKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLA 176 (545)
Q Consensus 97 v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~ 176 (545)
+++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+++
T Consensus 78 v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~----------------------------------- 121 (285)
T 3kea_A 78 VKILLFSGLDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL----------------------------------- 121 (285)
T ss_dssp HHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGG-----------------------------------
T ss_pred HHHHHHCCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC-----------------------------------
Confidence 99999999997 889999999999999999999999999998863
Q ss_pred cccCCCC-chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc-cCCChHHHHHHhcCcHHHH
Q 044420 177 VARDGNY-ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI-RKPSHLLFDAAELGNFEFL 254 (545)
Q Consensus 177 ~~~d~~g-~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~g~tpLh~A~~~g~~~~v 254 (545)
+.+|..| .||||+|+..|+. + +++.+++.++.. .+ ..|.||||+|+..|+.+++
T Consensus 122 ~~~~~~g~~t~L~~A~~~~~~-----------------~----~v~~Ll~~g~~~---~~~~~g~t~L~~A~~~g~~~~v 177 (285)
T 3kea_A 122 MFYGKTGWKTSFYHAVMLNDV-----------------S----IVSYFLSEIPST---FDLAILLSCIHITIKNGHVDMM 177 (285)
T ss_dssp GGCSSSGGGSHHHHHHHTTCH-----------------H----HHHHHHTTSCTT---CCCSTHHHHHHHHHHTTCHHHH
T ss_pred CccCCCCCCCHHHHHHHcCCH-----------------H----HHHHHHhCCCcc---ccccCCccHHHHHHHcChHHHH
Confidence 4555566 5777777776643 2 244444444221 11 2788999999999999999
Q ss_pred HHHHHHCCCcccccccCCCcH-HHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccch
Q 044420 255 AELICSYPDLVHELDDNNRSI-FHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGA 331 (545)
Q Consensus 255 ~~Ll~~~~~~~~~~d~~G~t~-Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~ 331 (545)
++|+++|++ ++.+|..|+|| ||+|+.+++.+++++|+++|++ ++.+| +.|+..|+.+++++|.+.
T Consensus 178 ~~Ll~~gad-~n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~gad----~~~~~-------~~a~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDIN----IYSAN-------LENVLLDDAEIAKMIIEK 243 (285)
T ss_dssp HHHHHHHHH-TCTTCCCBCCTTHHHHHHHTCHHHHHHHTTSCBC----STTTT-------GGGGTTTCHHHHHHHHHH
T ss_pred HHHHHcCCC-CCcccCCCCChHHHHHHHcCCHHHHHHHHHcCCC----CCCCC-------hhhhhcCCHHHHHHHHHc
Confidence 999999999 89999999998 9999999999999999999998 56666 467888888988888654
|
| >4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-38 Score=303.24 Aligned_cols=215 Identities=16% Similarity=0.129 Sum_probs=165.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--------cccccCCCCcHHHHHHHhCCH-HHHHHHHHcCcccccCC
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPED--------LTLQDRNGNTAFCFAVAAGSI-HIAKIMLKKNERLLTMR 111 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~--------~~~~d~~g~TpLh~A~~~g~~-~iv~~Ll~~~~~~~~~~ 111 (545)
.+|..+.+||+.||+.|+.++|++|++ .+++ ++..|..|.||||.|+..++. ++++.|++.|+++ +.+
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~--~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadv-n~~ 82 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLE--WTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGV-NVT 82 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHT--CC----------------------------------------CCCCT-TCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHH--CCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCC-CCc
Confidence 467778899999999999999999998 5543 567788899999999988775 5899999999997 899
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHH
Q 044420 112 GGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLA 191 (545)
Q Consensus 112 ~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~ 191 (545)
|.+|+||||+|+..|+.+++++|++.|++++ .
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~-----------------------------------~------------- 114 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAG-----------------------------------A------------- 114 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTT-----------------------------------C-------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcC-----------------------------------c-------------
Confidence 9999999999999999999999999887521 1
Q ss_pred hCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccC
Q 044420 192 RKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDN 271 (545)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~ 271 (545)
.+..|.||+|.|+..++.+++++|++.|++ ++.+|..
T Consensus 115 ------------------------------------------~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~-~n~~d~~ 151 (269)
T 4b93_B 115 ------------------------------------------RNADQAVPLHLACQQGHFQVVKCLLDSNAK-PNKKDLS 151 (269)
T ss_dssp ------------------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SCCCCTT
T ss_pred ------------------------------------------cCCCCCCccccccccChHHHHHHHHHCCCC-CCCCCCC
Confidence 124568888888889999999999999999 9999999
Q ss_pred CCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcC
Q 044420 272 NRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQP 351 (545)
Q Consensus 272 G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~ 351 (545)
|+||||+|+.+|+.+++++|+++|++ +|.+|..|+||||+|+..|+.+++++|.+ .|
T Consensus 152 g~TpL~~A~~~g~~~~v~~Ll~~gad----vn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-------------------~G 208 (269)
T 4b93_B 152 GNTPLIYACSGGHHELVALLLQHGAS----INASNNKGNTALHEAVIEKHVFVVELLLL-------------------HG 208 (269)
T ss_dssp CCCHHHHHHHTTCGGGHHHHHHTTCC----TTCBCTTSCBHHHHHHHTTCHHHHHHHHH-------------------TT
T ss_pred CCCHHHHHHHCCCHHHHHHHHHCCCC----CCccccCCCcHHHHHHHcCCHHHHHHHHH-------------------CC
Confidence 99999999999999999999999999 78899999999999999999999888743 38
Q ss_pred ccccccCCCCCChhhhhHhhh
Q 044420 352 TFREMKNSEGKTPRELFSIEH 372 (545)
Q Consensus 352 ~~~~~~n~~G~Tpl~~a~~~~ 372 (545)
++++.+|.+|+||||+|+++.
T Consensus 209 ad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 209 ASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp CCSCCCCTTSCCSGGGSCTTC
T ss_pred CCCCCcCCCCCCHHHHHHhCC
Confidence 899999999999999998654
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=283.46 Aligned_cols=229 Identities=17% Similarity=0.126 Sum_probs=159.6
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+..|.||||.|++.|+.+++++|++ .+ .+++ ..+..|.||||+|+..|+.+++++|++ .+.+++..+ ..|.||
T Consensus 6 d~~~~~~l~~A~~~g~~~~~~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~~~~t~ 79 (240)
T 3eu9_A 6 DDYSTWDIVKATQYGIYERCRELVE--AG-YDVR-QPDKENVTLLHWAAINNRIDLVKYYIS--KGAIVDQLGGDLNSTP 79 (240)
T ss_dssp SCGGGCCHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCBTTTTBCH
T ss_pred ccccchHHHHHHHcCChHHHHHHHH--cC-CCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHH--cCCcchhhcCCcCCCh
Confidence 4456677777777777777777777 44 4444 556677777777777777777777777 566665444 337777
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|++.|+++ +.++..|.||||+|+..|+.+++++|+++|+++
T Consensus 80 L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~----------------------- 135 (240)
T 3eu9_A 80 LHWATRQGHLSMVVQLMKYGADP-SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV----------------------- 135 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-----------------------
T ss_pred hHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-----------------------
Confidence 77777777777777777777775 666777777777777777777777777766653
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc-CCChHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR-KPSHLLF 243 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~g~tpLh 243 (545)
+.+|.+|.||||+|+..++... +++.+++.+ .+.+..+. .|.||||
T Consensus 136 ------------~~~~~~g~t~l~~a~~~~~~~~--------------------~~~~L~~~~-~~~~~~~~~~g~t~L~ 182 (240)
T 3eu9_A 136 ------------DMMDQNGMTPLMWAAYRTHSVD--------------------PTRLLLTFN-VSVNLGDKYHKNTALH 182 (240)
T ss_dssp ------------TCCCTTSCCHHHHHHHHCCSST--------------------THHHHHHTT-CCTTCCCTTTCCCHHH
T ss_pred ------------cccCCCCCcHHHHHHHhCChHH--------------------HHHHHHhcC-CCcchhhccCCCcHHH
Confidence 4455556666666664443211 133333333 23333344 7889999
Q ss_pred HHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccch
Q 044420 244 DAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+.+++++|++++.+.
T Consensus 183 ~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 183 WAVLAGNTTVISLLLEAGAN-VDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHHTCHHHHHHHHHHTCC-TTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 99999999999999999999 8999999999999999999999999999998773
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-36 Score=284.39 Aligned_cols=215 Identities=25% Similarity=0.235 Sum_probs=177.1
Q ss_pred CChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHH
Q 044420 20 GNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKI 99 (545)
Q Consensus 20 g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~ 99 (545)
|+.+++++|++ .+ .+++...|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++
T Consensus 2 g~~~~i~~Ll~--~g-~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~ 76 (223)
T 2f8y_A 2 DAPAVISDFIY--QG-ASLHNQTDRTGETALHLAARYSRSDAAKRLLE--ASADANIQDNMGRTPLHAAVSADAQGVFQI 76 (223)
T ss_dssp ---CCEETTEE--TT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHH--cC-CCcccccCCCCCchHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHH
Confidence 77889999999 66 66665678999999999999999999999999 799999999999999999999999999999
Q ss_pred HHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCccccc
Q 044420 100 MLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVAR 179 (545)
Q Consensus 100 Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~ 179 (545)
|+++++...+.++..|.||||+|+..|+.+++++|+++|+++ +.+
T Consensus 77 Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-----------------------------------~~~ 121 (223)
T 2f8y_A 77 LIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-----------------------------------NAV 121 (223)
T ss_dssp HHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-----------------------------------TCB
T ss_pred HHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-----------------------------------cCc
Confidence 999998445889999999999999999999999999988763 345
Q ss_pred CCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH
Q 044420 180 DGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259 (545)
Q Consensus 180 d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~ 259 (545)
|..|.||||+|+..|+. +++ +.+++.+ .+.+..+..|.||||+|++.|+.+++++|++
T Consensus 122 ~~~g~t~L~~A~~~~~~-----------------~~v----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~ 179 (223)
T 2f8y_A 122 DDLGKSALHWAAAVNNV-----------------DAA----VVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLLD 179 (223)
T ss_dssp CTTSCBHHHHHHHTTCH-----------------HHH----HHHHHTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCcHHHHHHHcCCH-----------------HHH----HHHHHcC-CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHH
Confidence 55666666666666643 233 3333333 3444556778888888888888889999999
Q ss_pred HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 260 ~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
+|++ ++.+|..|+||||+|+.+++.+++++|+++|+.
T Consensus 180 ~ga~-~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~ 216 (223)
T 2f8y_A 180 HFAN-RDITDHMDRLPRDIAQERMHHDIVRLLDEYNLV 216 (223)
T ss_dssp TTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCS
T ss_pred cCCC-CccccccCCCHHHHHHHhcchHHHHHHHHcCCC
Confidence 8888 888888899999999999999999999888876
|
| >1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-37 Score=300.42 Aligned_cols=250 Identities=17% Similarity=0.130 Sum_probs=209.4
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.||..|+.++|+.|++ .+ .+++ ..|..|.||||+||..|+.+++++|++ .|++++.+|..|.||
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~g~tp 109 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLE--RG-ADIN-YANVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIP 109 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHH--HC-CCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHH--cC-CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCcH
Confidence 45578899999999999999999999 66 6665 788999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc-ccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD-AKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
||+|+..|+.+++++|+++|+++ +..|..|.||||+|+..++.+++++++.. +.+++..+..+.++++ .
T Consensus 110 L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~---------~ 179 (299)
T 1s70_B 110 LHAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIML---------R 179 (299)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH---------H
T ss_pred HHHHHHcCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHH---------H
Confidence 99999999999999999999997 89999999999999999999999988864 4443222222222222 2
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
.+..++..........+..|.||||+|+..|+. + +++.+++.+ .+++..|..|.||||
T Consensus 180 ~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~-----------------~----~v~~Ll~~g-~d~~~~d~~g~tpL~ 237 (299)
T 1s70_B 180 DARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-----------------E----VLKLLIQAR-YDVNIKDYDGWTPLH 237 (299)
T ss_dssp HHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-----------------H----HHHHHHTTT-CCTTCCCTTCCCHHH
T ss_pred HHHHHHhccCcchhhhcCCCCCHHHHHHHCCcH-----------------H----HHHHHHHcC-CCCCCcCCCCCcHHH
Confidence 345666666666777889999999999999965 3 355556555 566778899999999
Q ss_pred HHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 244 DAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|++. ..+.++.+++.
T Consensus 238 ~A~~~~~~~~v~~Ll~~gad-~~~~d~~g~t~l~~A~~~-~~~~l~~l~~~ 286 (299)
T 1s70_B 238 AAAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADED-ILGYLEELQKK 286 (299)
T ss_dssp HHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCSG-GGHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHH-HHHHHHHHHHH
Confidence 99999999999999999999 999999999999999764 45555555544
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-38 Score=309.64 Aligned_cols=266 Identities=12% Similarity=0.080 Sum_probs=203.7
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccc-----------
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQ----------- 77 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~----------- 77 (545)
..+|+| ....++|++|++ .| .+++ ..+..|.|++| |+.++|+.|++ +|++++..
T Consensus 23 ~~~~~~----~~~~dlv~~ll~--~g-a~i~-~~~~~g~~~~~-----g~~~~v~~Ll~--~g~~~~~~~~~~a~~~~~~ 87 (327)
T 1sw6_A 23 TAGPII----TFTHDLTSDFLS--SP-LKIM-KALPSPVVNDN-----EQKMKLEAFLQ--RLLFPEIQEMPTSLNNDSS 87 (327)
T ss_dssp --CCEE----ECCTTCCCSTTT--SS-CCCE-ECBCCCCCCCH-----HHHHHHHHHHH--HHHC---------------
T ss_pred cccchh----hhcCchHHHHhh--CC-cccc-cCCCCCCcccC-----chhHHHHHHHH--hccCCccccchHhhhcccc
Confidence 344454 566778999999 77 7776 78899999988 99999999999 67776551
Q ss_pred ------cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccC-CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 78 ------DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTM-RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 78 ------d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~-~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
.....+.+|+|+..+..++++.|++.|+++ +. +|.+|.||||+|+..|+.++|++|+++|++++..+..|.|
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dv-n~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T 166 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNL-NIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSCCCS-CSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCc-ccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 111223458888888999999999999998 77 8999999999999999999999999999999999999999
Q ss_pred hHHHHHHhcCc--HHHHHHHHHhCCCcccccCCCCchHHHHHHh----CCCCccccccchhhHhHHHHHHHHHHHHHHHh
Q 044420 151 ALFFTCISTDL--HDLALKLLEDHSGLAVARDGNYETALHVLAR----KPSAFASRNQGLLTRLMHSALQLVKSLWEAIL 224 (545)
Q Consensus 151 ~l~~aa~~~~~--~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 224 (545)
|||+|+..+.. .+.+..++.....+++.+|.+|+||||+|+. .|+ .++++.+++.+.
T Consensus 167 pLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~-----------------~~~v~~Ll~~~~ 229 (327)
T 1sw6_A 167 CLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGC-----------------SAAAKYYLDILM 229 (327)
T ss_dssp HHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTC-----------------HHHHHHHHHHHH
T ss_pred HHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHcccccc-----------------HHHHHHHHHHHH
Confidence 99999997541 2455566666567899999999999999998 664 355556655532
Q ss_pred cC---------------CchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHH
Q 044420 225 KR---------------DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFN 289 (545)
Q Consensus 225 ~~---------------~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~ 289 (545)
.. ...+++..+..|.||||.|+. +++|+++ + ++.+|.+|+||||+|+.+|+.++++
T Consensus 230 ~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--~-~n~~d~~G~TpLh~A~~~g~~~~v~ 300 (327)
T 1sw6_A 230 GWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--M-LNAQDSNGDTCLNIAARLGNISIVD 300 (327)
T ss_dssp HHHHHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--T-TTCCCTTSCCHHHHHHHHCCHHHHH
T ss_pred HHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--C-CCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 10 135667788999999999996 8999998 4 7789999999999999999999999
Q ss_pred HHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 290 LIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 290 ~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
+|+++|++ ++.+|.+|+||||+|++.|
T Consensus 301 ~Ll~~Gad----~~~~d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 301 ALLDYGAD----PFIANKSGLRPVDFGAGLE 327 (327)
T ss_dssp HHHHTTCC----TTCCCTTSCCGGGGTCC--
T ss_pred HHHHcCCC----CcccCCCCCCHHHHHHhcC
Confidence 99999999 7889999999999999865
|
| >3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=293.28 Aligned_cols=219 Identities=21% Similarity=0.183 Sum_probs=190.2
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|+||||+||..|+.+++++|++ .+ .+++ .. +|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~--~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~d~~g~t 97 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLN--AG-ALKN-LL--ENEFPLHQAATLEDTKIVKILLF--SGLDDSQFDDKGNT 97 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHH--TT-GGGS-CC--TTCCHHHHHTTSSSCHHHHHHHH--TTCCTTCCCTTSCC
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHh--CC-CCCC-CC--CCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCc
Confidence 355779999999999999999999999 66 6665 33 59999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCC-CcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGEN-MTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g-~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~ 162 (545)
|||+|+..|+.+++++|+++|+++ +.++..| .||||+|+..|+.+++++|+++|++.
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~--------------------- 155 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRL-MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST--------------------- 155 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGG-GGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTT---------------------
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCC-CccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcc---------------------
Confidence 999999999999999999999997 8899999 89999999999999999999998751
Q ss_pred HHHHHHHHhCCCcccccCC-CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChH
Q 044420 163 DLALKLLEDHSGLAVARDG-NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHL 241 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~-~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tp 241 (545)
.+. .|.||||+|+..|+. ++++.|++.. .+++..+..|.||
T Consensus 156 ----------------~~~~~g~t~L~~A~~~g~~-----------------~~v~~Ll~~g-----ad~n~~~~~g~t~ 197 (285)
T 3kea_A 156 ----------------FDLAILLSCIHITIKNGHV-----------------DMMILLLDYM-----TSTNTNNSLLFIP 197 (285)
T ss_dssp ----------------CCCSTHHHHHHHHHHTTCH-----------------HHHHHHHHHH-----HHTCTTCCCBCCT
T ss_pred ----------------ccccCCccHHHHHHHcChH-----------------HHHHHHHHcC-----CCCCcccCCCCCh
Confidence 122 677888888888743 5555555554 3445667889997
Q ss_pred -HHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccch
Q 044420 242 -LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 242 -Lh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
||+|+..|+.+++++|+++|++ ++.+| +.|+..|+.+++++|+++|++.
T Consensus 198 ~L~~A~~~~~~~~v~~Ll~~gad-~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 198 DIKLAIDNKDIEMLQALFKYDIN-IYSAN-------LENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp THHHHHHHTCHHHHHHHTTSCBC-STTTT-------GGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC-CCCCC-------hhhhhcCCHHHHHHHHHcCCCC
Confidence 9999999999999999999999 88777 3567899999999999999883
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-37 Score=289.79 Aligned_cols=221 Identities=18% Similarity=0.147 Sum_probs=171.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMK--PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 118 (545)
.+|.+|+||||+|+..|+.+++++|++... +++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~ 81 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTP 81 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCH
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCH
Confidence 567889999999999999998888887311 2378888999999999999999999999999999986 8888999999
Q ss_pred HHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 119 LYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 119 L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
||+|+..|+.+++++|+++++++...
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~------------------------------------------------------ 107 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLH------------------------------------------------------ 107 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSS------------------------------------------------------
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHH------------------------------------------------------
Confidence 99999999999999999887641100
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccccccc-CCCcHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDD-NNRSIFH 277 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~-~G~t~Lh 277 (545)
......+..|.||||+|+..|+.+++++|+++|++ ++.+|. .|+||||
T Consensus 108 ------------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~~g~tpL~ 156 (236)
T 1ikn_D 108 ------------------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD-VNAQEPCNGRTALH 156 (236)
T ss_dssp ------------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC-TTCCCTTTCCCHHH
T ss_pred ------------------------------HHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCCCCCCCCCHHH
Confidence 01112335678888888888888888888888888 777887 8888888
Q ss_pred HHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccc--c
Q 044420 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFR--E 355 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~--~ 355 (545)
+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|.+. +++. .
T Consensus 157 ~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~-------------------ga~~~~~ 213 (236)
T 1ikn_D 157 LAVDLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLGQL-------------------TLENLQM 213 (236)
T ss_dssp HHHHTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHHTT-------------------SCGGGSS
T ss_pred HHHHcCCHHHHHHHHHcCCC----CCcccCCCCCHHHHHHccCchHHHHHHHHc-------------------chhhhhc
Confidence 88888888888888888888 677888888888888888888887777433 3333 4
Q ss_pred ccCCCCCChhhhhHh
Q 044420 356 MKNSEGKTPRELFSI 370 (545)
Q Consensus 356 ~~n~~G~Tpl~~a~~ 370 (545)
.++.+|.||.+...+
T Consensus 214 ~~~~~~~~~~~~~~~ 228 (236)
T 1ikn_D 214 LPESEDEESYDTESE 228 (236)
T ss_dssp CCCCCTTTCCCCC--
T ss_pred CCccchHHHHhhhcc
Confidence 788888888887654
|
| >1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=286.11 Aligned_cols=219 Identities=16% Similarity=0.118 Sum_probs=188.5
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCch---hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRS---ILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~---~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
..+.+|+||||+||..|+.++++.|++ ... . +++ ..+..|+||||+|+..|+.+++++|++ .|++++.+|..
T Consensus 3 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~-~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~ 77 (236)
T 1ikn_D 3 QLTEDGDSFLHLAIIHEEKALTMEVIR-QVK-GDLAFLN-FQNNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFR 77 (236)
T ss_dssp ----CCCCTTHHHHHTTCSSSSSCCCC-------CCCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTT
T ss_pred cCCCCCCchhHHHHHcCChhHHHHHHH-Hhh-ccHHHhh-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCC
Confidence 456789999999999999999999999 222 1 343 788999999999999999999999999 89999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcc-----cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNER-----LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
|.||||+|+..|+.+++++|+++|++ ..+..+..|.||||+|+..|+.+++++|+++|++++..
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~----------- 146 (236)
T 1ikn_D 78 GNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ----------- 146 (236)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC-----------
T ss_pred CCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCC-----------
Confidence 99999999999999999999999864 23788999999999999999999999999998862211
Q ss_pred HHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhc
Q 044420 156 CISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLI 235 (545)
Q Consensus 156 a~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 235 (545)
+
T Consensus 147 -------------------------------------------------------------------------------~ 147 (236)
T 1ikn_D 147 -------------------------------------------------------------------------------E 147 (236)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred -------------------------------------------------------------------------------C
Confidence 1
Q ss_pred c-CCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 236 R-KPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 236 ~-~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
. .|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|++.. ...++.+|.||.+
T Consensus 148 ~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~--~~~~~~~~~~~~~ 224 (236)
T 1ikn_D 148 PCNGRTALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENL--QMLPESEDEESYD 224 (236)
T ss_dssp TTTCCCHHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGG--SSCCCCCTTTCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCcccCCCCCHHHHHHccCchHHHHHHHHcchhhh--hcCCccchHHHHh
Confidence 2 578899999999999999999999999 99999999999999999999999999999999853 4578999999999
Q ss_pred hhccCC
Q 044420 315 LAAKSP 320 (545)
Q Consensus 315 ~A~~~~ 320 (545)
.+....
T Consensus 225 ~~~~~~ 230 (236)
T 1ikn_D 225 TESEFT 230 (236)
T ss_dssp CC----
T ss_pred hhcccc
Confidence 887643
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-35 Score=274.65 Aligned_cols=193 Identities=18% Similarity=0.137 Sum_probs=118.3
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccc-----ccccCCCCc
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDL-----TLQDRNGNT 83 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~-----~~~d~~g~T 83 (545)
|+||||.||+.|+.++++.|++ ..+ .+++ ..|..|+||||+|+..|+.+++++|++ .++++ +.+|..|.|
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~-~~g-~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~~~~~~g~t 77 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLK-FEG-CEVH-QRGAMGETALHIAALYDNLEAAMVLME--AAPELVFEPMTSELYEGQT 77 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHT-TTC-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--HCGGGGGCCCCSTTTTTCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHH-hcC-CCcc-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCchhccccccccCCCCcC
Confidence 5555555555555555555555 223 3333 445555555555555555555555555 34443 344445555
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCC-------------CCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGG-------------ENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~-------------~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
|||+|+..|+.+++++|+++|+++ +.++. .|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---------- 146 (232)
T 2rfa_A 78 ALHIAVINQNVNLVRALLARGASV-SARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD---------- 146 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC----------
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCC-CcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC----------
Confidence 555555555555555555555554 33332 455555555555555555555555443
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
T Consensus 147 -------------------------------------------------------------------------------- 146 (232)
T 2rfa_A 147 -------------------------------------------------------------------------------- 146 (232)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccCCChHHHHHHhcCcHHHH----HHHHHHCCCcc-----cccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 231 FTDLIRKPSHLLFDAAELGNFEFL----AELICSYPDLV-----HELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 231 ~~~~~~~g~tpLh~A~~~g~~~~v----~~Ll~~~~~~~-----~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
++..|..|.||||+|+..|+.+++ ++|+++|++.. +.+|..|+||||+|+.+|+.+++++|+++|..
T Consensus 147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~~ 222 (232)
T 2rfa_A 147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222 (232)
T ss_dssp TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCcc
Confidence 223345566666666666676666 88888888722 68899999999999999999999999999876
|
| >2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=277.42 Aligned_cols=208 Identities=20% Similarity=0.196 Sum_probs=179.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccc----cCCCCCCCcHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLL----TMRGGENMTPLY 120 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~----~~~~~~g~tpL~ 120 (545)
.|+||||+|++.|+.+++++|++. .|++++.+|..|+||||+|+..|+.+++++|+++|+++. +.+|..|.||||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~-~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~ 80 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKF-EGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH 80 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTT-TCSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHh-cCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence 589999999999999999999994 499999999999999999999999999999999999853 456779999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
+|+..|+.+++++|+++|++++..+.... ++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~-------------------------------------~~------------ 111 (232)
T 2rfa_A 81 IAVINQNVNLVRALLARGASVSARATGSV-------------------------------------FH------------ 111 (232)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCCSGG-------------------------------------GS------------
T ss_pred HHHHcCCHHHHHHHHhCCCCCCcccCCcc-------------------------------------ee------------
Confidence 99999999999999999987544332110 00
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
......|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+
T Consensus 112 ----------------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~ 162 (232)
T 2rfa_A 112 ----------------------------YRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD-IRAQDSLGNTVLHILI 162 (232)
T ss_dssp ----------------------------CCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred ----------------------------ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence 00112346789999999999999999999999999 9999999999999999
Q ss_pred HhCchHHH----HHHHhhccchhh--hhhcccCCCCChhhhhccCCCCCccccccch
Q 044420 281 LHRHANIF----NLIYEIGFTKEL--MATFKDHDQNNMLHLAAKSPHPSRVSIVSGA 331 (545)
Q Consensus 281 ~~~~~~iv----~~Ll~~g~~~~~--~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~ 331 (545)
.+++.+++ ++|+++|++... +.+.+|..|+||||+|++.|+.+++++|.+.
T Consensus 163 ~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 163 LQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp TCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 99999988 999999997421 1268999999999999999999999988643
|
| >3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=275.59 Aligned_cols=197 Identities=21% Similarity=0.128 Sum_probs=159.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|.||||.|+..|+.+++++|++ .+ .......+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 38 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~~-~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~ 112 (240)
T 3eu9_A 38 PDKENVTLLHWAAINNRIDLVKYYIS--KG-AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMK--YGADPSLIDGEGCSC 112 (240)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHH--TT-CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCCCCCHHHHHHHhCCHHHHHHHHH--cC-CcchhhcCCcCCChhHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCH
Confidence 45679999999999999999999999 56 55655666779999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC-HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ-RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
||+|+..|+.+++++|+++|+++ +.++..|.||||+|+..++ .+++++|++.|++++..+.
T Consensus 113 l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~----------------- 174 (240)
T 3eu9_A 113 IHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK----------------- 174 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCT-----------------
T ss_pred HHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhc-----------------
Confidence 99999999999999999999997 8999999999999997766 7888888888876443332
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
..|.||||+|+..|+. ++++.|++. + .+.+..+..|.||||
T Consensus 175 -----------------~~g~t~L~~A~~~~~~-----------------~~v~~Ll~~----g-~~~~~~~~~g~t~l~ 215 (240)
T 3eu9_A 175 -----------------YHKNTALHWAVLAGNT-----------------TVISLLLEA----G-ANVDAQNIKGESALD 215 (240)
T ss_dssp -----------------TTCCCHHHHHHHHTCH-----------------HHHHHHHHH----T-CCTTCBCTTSCBHHH
T ss_pred -----------------cCCCcHHHHHHHcCCH-----------------HHHHHHHHc----C-CCCCCcCCCCCCHHH
Confidence 1556666666666533 333333333 2 334455677788888
Q ss_pred HHHhcCcHHHHHHHHHHCCC
Q 044420 244 DAAELGNFEFLAELICSYPD 263 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~~~~~ 263 (545)
+|++.|+.+++++|++.+++
T Consensus 216 ~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 216 LAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHTTCHHHHHHHHHHC--
T ss_pred HHHHcCcHHHHHHHHHhhhc
Confidence 88888888899999888776
|
| >2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-35 Score=278.31 Aligned_cols=211 Identities=16% Similarity=0.160 Sum_probs=183.6
Q ss_pred cCCHHHHHHHHHcCCCcccccc-cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHH
Q 044420 56 ARQTGFVEELLKLMKPEDLTLQ-DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYL 134 (545)
Q Consensus 56 ~g~~~~v~~Ll~~~~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~L 134 (545)
.|+.+++++|++ .|.+++.. |..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|
T Consensus 1 gg~~~~i~~Ll~--~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~L 77 (223)
T 2f8y_A 1 GDAPAVISDFIY--QGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADA-NIQDNMGRTPLHAAVSADAQGVFQIL 77 (223)
T ss_dssp ----CCEETTEE--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCcHHHHHHHHH--cCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 367889999999 78888765 899999999999999999999999999997 88999999999999999999999999
Q ss_pred HHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHH
Q 044420 135 YDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQ 214 (545)
Q Consensus 135 l~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~ 214 (545)
+++++. +++.++..|.||||+|+..++. +
T Consensus 78 l~~~~~----------------------------------~~~~~~~~g~t~L~~A~~~~~~-----------------~ 106 (223)
T 2f8y_A 78 IRNRAT----------------------------------DLDARMHDGTTPLILAARLAVE-----------------G 106 (223)
T ss_dssp HHBTTS----------------------------------CTTCCCTTCCCHHHHHHHHTCH-----------------H
T ss_pred HHcCCC----------------------------------CcccCCCCCCcHHHHHHHhCcH-----------------H
Confidence 998762 2456677888888888888854 3
Q ss_pred HHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 215 LVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 215 ~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
++ +.+++.+ .+.+..+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++
T Consensus 107 ~~----~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 180 (223)
T 2f8y_A 107 ML----EDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGAN-KDMQNNREETPLFLAAREGSYETAKVLLDH 180 (223)
T ss_dssp HH----HHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HH----HHHHHcC-CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCcCHHHHHHHcCCHHHHHHHHHc
Confidence 44 4444444 45566778899999999999999999999999999 899999999999999999999999999999
Q ss_pred ccchhhhhhcccCCCCChhhhhccCCCCCccccccc
Q 044420 295 GFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 295 g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~ 330 (545)
|++ ++.+|..|+||||+|++.++.+++++|.+
T Consensus 181 ga~----~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 181 FAN----RDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp TCC----TTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred CCC----CccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 998 77899999999999999999999988853
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=262.23 Aligned_cols=198 Identities=18% Similarity=0.126 Sum_probs=156.8
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..+.||||.||..|+.+.++.|++ ..+ .+++ ..|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~l~ 77 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQ-DTT-YQVD-EVDTEGNTPLNIAVHNNDIEIAKALID--RGADINLQNSISDSPYL 77 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHT-CTT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHH-cCC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHH
Confidence 357888999999999999998888 333 3554 678888899999999999999999998 78888888888999999
Q ss_pred HHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 87 FAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
+|+..|+.+++++|++. ++++ +.+|..|.||||+|+..|+.+++++|+++|.
T Consensus 78 ~A~~~~~~~~~~~Ll~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~-------------------------- 130 (201)
T 3hra_A 78 YAGAQGRTEILAYMLKHATPDL-NKHNRYGGNALIPAAEKGHIDNVKLLLEDGR-------------------------- 130 (201)
T ss_dssp HHHHTTCHHHHHHHHHHSCCCT-TCCCTTSCCSHHHHHHTTCHHHHHHHHHHCC--------------------------
T ss_pred HHHHcCCHHHHHHHHhccCccc-ccccCCCCcHHHHHHHcCCHHHHHHHHHcCC--------------------------
Confidence 99999999999998854 4454 7888888999999999999998888888873
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
.+++.+|..|.||||+|+..++..
T Consensus 131 --------~~~~~~~~~g~t~L~~A~~~~~~~------------------------------------------------ 154 (201)
T 3hra_A 131 --------EDIDFQNDFGYTALIEAVGLREGN------------------------------------------------ 154 (201)
T ss_dssp --------CCTTCCCTTSCCHHHHHHHSSCCS------------------------------------------------
T ss_pred --------CCcCCCCCCCCCHHHHHHHhccch------------------------------------------------
Confidence 123444555555555555444210
Q ss_pred HhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhc
Q 044420 246 AELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295 (545)
Q Consensus 246 ~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g 295 (545)
.++.+++++|+++|++ ++.+|..|+||||+|+.+|+.+++++|+++|
T Consensus 155 --~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 155 --QLYQDIVKLLMENGAD-QSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp --HHHHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred --hhHHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 1137899999999999 8899999999999999999999999999876
|
| >1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=299.17 Aligned_cols=265 Identities=9% Similarity=0.000 Sum_probs=202.2
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccC------------
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTM------------ 110 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~------------ 110 (545)
+..+.+|+| ..+.++|++|++ +|++++.+|..|.|+++ |+.++|+.|+++|++. +.
T Consensus 20 ~~~~~~~~~----~~~~dlv~~ll~--~ga~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~-~~~~~~~a~~~~~~ 87 (327)
T 1sw6_A 20 NDRTAGPII----TFTHDLTSDFLS--SPLKIMKALPSPVVNDN-----EQKMKLEAFLQRLLFP-EIQEMPTSLNNDSS 87 (327)
T ss_dssp -----CCEE----ECCTTCCCSTTT--SSCCCEECBCCCCCCCH-----HHHHHHHHHHHHHHC----------------
T ss_pred ccccccchh----hhcCchHHHHhh--CCcccccCCCCCCcccC-----chhHHHHHHHHhccCC-ccccchHhhhcccc
Confidence 345667777 456678999999 89999999999999988 9999999999999774 32
Q ss_pred -----CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCcc-CCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc
Q 044420 111 -----RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDN-LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE 184 (545)
Q Consensus 111 -----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~-~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~ 184 (545)
+.....+.+|.|+..+..+++++|++.|++++. .+..|.||||+|+..+. ..+.++|.++|++++.+|.+|+
T Consensus 88 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~--~~~v~~Ll~~Gad~n~~d~~g~ 165 (327)
T 1sw6_A 88 NRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIAN--LELVKHLVKHGSNRLYGDNMGE 165 (327)
T ss_dssp ----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTC--HHHHHHHHHTTCCTTBCCTTCC
T ss_pred cccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCC--HHHHHHHHHcCCCCCCcCCCCC
Confidence 111122345888888899999999999999998 89999999999999875 3566777788999999999999
Q ss_pred hHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHh----cCcHHHHHHHHHH
Q 044420 185 TALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAE----LGNFEFLAELICS 260 (545)
Q Consensus 185 tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~----~g~~~~v~~Ll~~ 260 (545)
||||+|+..|+.. ..+.++.+++.+. .+++..|..|.||||+|++ .|+.+++++|++.
T Consensus 166 TpLh~A~~~g~~~--------------~~~~~~~ll~~~~----~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~ 227 (327)
T 1sw6_A 166 SCLVKAVKSVNNY--------------DSGTFEALLDYLY----PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI 227 (327)
T ss_dssp CHHHHHHHSSHHH--------------HTTCHHHHHHHHG----GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred CHHHHHHHhcccc--------------cHHHHHHHHHhhh----ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence 9999999998510 1233445555553 3466778999999999999 9999999999988
Q ss_pred --------------------CCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 261 --------------------YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 261 --------------------~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
+++ ++.+|..|+||||.|+. +++|+++ + +|.+|.+|+||||+|++.|
T Consensus 228 ~~~~~~~~~~~~i~~~~~~~g~~-~~~~~~~g~t~L~~a~~------~~~Ll~~--~----~n~~d~~G~TpLh~A~~~g 294 (327)
T 1sw6_A 228 LMGWIVKKQNRPIQSGTNEKESK-PNDKNGERKDSILENLD------LKWIIAN--M----LNAQDSNGDTCLNIAARLG 294 (327)
T ss_dssp HHHHHHHGGGCCEEEC-----------------CHHHHHCS------HHHHHHH--T----TTCCCTTSCCHHHHHHHHC
T ss_pred HHHHHhcccchHHHhhhhcccCC-cccccccCCChhHHHHH------HHHHHHh--C----CCCCCCCCCCHHHHHHHcC
Confidence 777 89999999999999995 8999987 3 6789999999999999999
Q ss_pred CCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhh
Q 044420 321 HPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIE 371 (545)
Q Consensus 321 ~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~ 371 (545)
+.+++++|.+ .|++++.+|.+|+||||+|++.
T Consensus 295 ~~~~v~~Ll~-------------------~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 295 NISIVDALLD-------------------YGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp CHHHHHHHHH-------------------TTCCTTCCCTTSCCGGGGTCC-
T ss_pred CHHHHHHHHH-------------------cCCCCcccCCCCCCHHHHHHhc
Confidence 9999888743 3889999999999999999754
|
| >3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=262.07 Aligned_cols=191 Identities=22% Similarity=0.240 Sum_probs=170.8
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+..+.||||.|+..|+.+.++.|++. .+.+++.+|.+|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A 79 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQD-TTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI-NLQNSISDSPYLYA 79 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTC-TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHc-CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHH
Confidence 45789999999999999999999995 45599999999999999999999999999999999997 89999999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
+..|+.+++++|++++.. +++
T Consensus 80 ~~~~~~~~~~~Ll~~~~~----------------------------------~~~------------------------- 100 (201)
T 3hra_A 80 GAQGRTEILAYMLKHATP----------------------------------DLN------------------------- 100 (201)
T ss_dssp HHTTCHHHHHHHHHHSCC----------------------------------CTT-------------------------
T ss_pred HHcCCHHHHHHHHhccCc----------------------------------ccc-------------------------
Confidence 999999999999965431 111
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHC-CCcccccccCCCcHHHHHHH
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSY-PDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~t~Lh~A~~ 281 (545)
..+..|.||||+|+..|+.+++++|++++ .+ ++.+|..|+||||+|+.
T Consensus 101 ------------------------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~t~L~~A~~ 149 (201)
T 3hra_A 101 ------------------------------KHNRYGGNALIPAAEKGHIDNVKLLLEDGRED-IDFQNDFGYTALIEAVG 149 (201)
T ss_dssp ------------------------------CCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCC-TTCCCTTSCCHHHHHHH
T ss_pred ------------------------------cccCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-cCCCCCCCCCHHHHHHH
Confidence 12256788888888999999999999999 55 99999999999999999
Q ss_pred hCc-----hHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCcccccc
Q 044420 282 HRH-----ANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 282 ~~~-----~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
.++ .+++++|+++|++ ++.+|.+|+||||+|++.|+.+++++|.
T Consensus 150 ~~~~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~l~~A~~~~~~~~~~~Ll 198 (201)
T 3hra_A 150 LREGNQLYQDIVKLLMENGAD----QSIKDNSGRTAMDYANQKGYTEISKILA 198 (201)
T ss_dssp SSCCSHHHHHHHHHHHHTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred hccchhhHHHHHHHHHHCCCC----CCccCCCCCCHHHHHHHcCCHhHHHHHH
Confidence 987 9999999999999 7889999999999999999999988874
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=275.13 Aligned_cols=207 Identities=14% Similarity=0.044 Sum_probs=168.3
Q ss_pred CCCcHHHHHHHcCCHH----HHHHHHHcCCCccccc----ccCCCCcHHHHHHHh---CCHHHHHHHHHcCccccc----
Q 044420 45 GYETLLHLAAGARQTG----FVEELLKLMKPEDLTL----QDRNGNTAFCFAVAA---GSIHIAKIMLKKNERLLT---- 109 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~----~v~~Ll~~~~~~~~~~----~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~---- 109 (545)
.|+||||.|++.|+.+ ++++|++ .+++++. +|..|+||||+|+.. |+.+++++|++.|+++..
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~--~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 78 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRW--NSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL 78 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHH--cCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence 4889999999999997 6677777 6899998 899999999999999 999999999999987621
Q ss_pred ------CCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCC
Q 044420 110 ------MRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNY 183 (545)
Q Consensus 110 ------~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g 183 (545)
.+|..|.||||+|+..|+.+++++|+++|++++..+..+.
T Consensus 79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~---------------------------------- 124 (256)
T 2etb_A 79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF---------------------------------- 124 (256)
T ss_dssp GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG----------------------------------
T ss_pred cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCccccccc----------------------------------
Confidence 2347899999999999999999999999988555444322
Q ss_pred chHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH---H
Q 044420 184 ETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC---S 260 (545)
Q Consensus 184 ~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~---~ 260 (545)
++ .+....+..|.||||+|+..|+.+++++|++ +
T Consensus 125 -~~------------------------------------------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 125 -FQ------------------------------------------KHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp -GS------------------------------------------CCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred -cc------------------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 10 0001122458899999999999999999999 8
Q ss_pred CCCcccccccCCCcHHHHHHH--hCchH-------HHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccccc
Q 044420 261 YPDLVHELDDNNRSIFHIAVL--HRHAN-------IFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 261 ~~~~~~~~d~~G~t~Lh~A~~--~~~~~-------iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
|++ ++.+|.+|+||||+|+. +++.+ ++++|+++|++++. ..+.+|..|+||||+|++.|+.+++++|
T Consensus 162 ga~-~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~L 240 (256)
T 2etb_A 162 PAS-LEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHI 240 (256)
T ss_dssp CCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CCC-cCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHH
Confidence 888 88999999999999998 77887 99999999988310 0178999999999999999999999888
Q ss_pred cch
Q 044420 329 SGA 331 (545)
Q Consensus 329 ~~~ 331 (545)
.+.
T Consensus 241 l~~ 243 (256)
T 2etb_A 241 LQR 243 (256)
T ss_dssp HHH
T ss_pred HhC
Confidence 654
|
| >2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-34 Score=271.51 Aligned_cols=195 Identities=18% Similarity=0.163 Sum_probs=163.4
Q ss_pred CCHHhHHHHHcCChH----HHHHhhcCCCCchhhhh---ccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCccccc--
Q 044420 9 ICVPLQKAALKGNWP----TAKHLLGNEDPRSILCA---GIAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTL-- 76 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~----~v~~Ll~~~~~~~~~~~---~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~-- 76 (545)
|+||||.||+.|+.+ ++++|++ .+ .+++. ..|..|+||||+|+.. |+.+++++|++ .|++++.
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~--~g-~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~ 76 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRW--NS-KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQ--IDKDSGNPK 76 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHH--HT-CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHH--HHHHTTCSS
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHH--cC-CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHh--cCCcccchh
Confidence 789999999999998 4556666 45 55552 2789999999999999 99999999999 6777663
Q ss_pred ---------ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCC-------------CCcHHHHHHHcCCHHHHHHH
Q 044420 77 ---------QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGE-------------NMTPLYMAAVLAQRDMALYL 134 (545)
Q Consensus 77 ---------~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-------------g~tpL~~A~~~g~~~iv~~L 134 (545)
+|..|.||||+|+..|+.+++++|+++|+++ +.++.. |.||||+|+..|+.+++++|
T Consensus 77 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~L 155 (256)
T 2etb_A 77 PLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADV-HLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYL 155 (256)
T ss_dssp CGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcccccccccccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 3478999999999999999999999999997 777776 99999999999999999999
Q ss_pred HH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHH
Q 044420 135 YD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHS 211 (545)
Q Consensus 135 l~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~ 211 (545)
++ +|++ ++.+|.+|+||||+|+..+
T Consensus 156 l~~~~~ga~-----------------------------------~n~~d~~g~TpLh~A~~~~----------------- 183 (256)
T 2etb_A 156 LENPHQPAS-----------------------------------LEATDSLGNTVLHALVMIA----------------- 183 (256)
T ss_dssp HHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHC-----------------
T ss_pred HhccccCCC-----------------------------------cCccCCCCCCHHHHHHHcc-----------------
Confidence 99 6664 4555666666666666522
Q ss_pred HHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCc-------HHHHHHHHHHCCCcc-------cccccCCCcHHH
Q 044420 212 ALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGN-------FEFLAELICSYPDLV-------HELDDNNRSIFH 277 (545)
Q Consensus 212 ~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~-------~~~v~~Ll~~~~~~~-------~~~d~~G~t~Lh 277 (545)
.++ .+++++|+++|++ + +.+|..|+||||
T Consensus 184 ------------------------------------~~~~~~~~~~~~iv~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~ 226 (256)
T 2etb_A 184 ------------------------------------DNSPENSALVIHMYDGLLQMGAR-LCPTVQLEEISNHQGLTPLK 226 (256)
T ss_dssp ------------------------------------CSCHHHHHHHHHHHHHHHHHHHH-HSTTCCGGGCCCTTSCCHHH
T ss_pred ------------------------------------cCCchhhHHHHHHHHHHHHcCCC-cccccccccccCCCCCCHHH
Confidence 222 3488999999988 6 889999999999
Q ss_pred HHHHhCchHHHHHHHhhccch
Q 044420 278 IAVLHRHANIFNLIYEIGFTK 298 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~ 298 (545)
+|+..|+.+++++|+++|.+.
T Consensus 227 ~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCCCCC
Confidence 999999999999999998874
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-34 Score=276.25 Aligned_cols=221 Identities=15% Similarity=0.134 Sum_probs=152.2
Q ss_pred CcccccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhh---hccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcc-
Q 044420 3 RNVYLNICVPLQKAALKGNWPTAKHLLGN--EDPRSILC---AGIAKGYETLLHLAAGA---RQTGFVEELLKLMKPED- 73 (545)
Q Consensus 3 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~---~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~- 73 (545)
+..+.+|+||||.||+.|+.++|+.|++. ..+ ..++ ...|..|+||||+|+.. |+.+++++|++ .|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~--~ga~~ 83 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSK-KRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD--VARKT 83 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSC-CCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH--HHHHT
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcc-cccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHH--hhccc
Confidence 44567788999999999999988888861 011 1221 13477889999999976 88999999998 5554
Q ss_pred ------ccc----ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCC--------------CCCcHHHHHHHcCCHH
Q 044420 74 ------LTL----QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGG--------------ENMTPLYMAAVLAQRD 129 (545)
Q Consensus 74 ------~~~----~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~--------------~g~tpL~~A~~~g~~~ 129 (545)
++. +|..|.||||+|+..|+.++|++|+++|+++ +.++. .|.||||+|+..|+.+
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~ 162 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHHcCCHH
Confidence 232 5668899999999999999999999998886 66765 7889999999988888
Q ss_pred HHHHHHH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhh
Q 044420 130 MALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLT 206 (545)
Q Consensus 130 iv~~Ll~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~ 206 (545)
++++|++ +|++ ++.+|.+|+||||+|+..|+...
T Consensus 163 ~v~~Ll~~~~~gad-----------------------------------~~~~d~~g~tpLh~A~~~~~~~~-------- 199 (273)
T 2pnn_A 163 IVKFLLQNSWQPAD-----------------------------------ISARDSVGNTVLHALVEVADNTV-------- 199 (273)
T ss_dssp HHHHHHHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHCCSCH--------
T ss_pred HHHHHHhcccCCCC-----------------------------------ceeeCCCCCcHHHHHHHccCcch--------
Confidence 8888888 5554 45666677777777776553210
Q ss_pred HhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCccc-------ccccCCCcHHHHH
Q 044420 207 RLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVH-------ELDDNNRSIFHIA 279 (545)
Q Consensus 207 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~-------~~d~~G~t~Lh~A 279 (545)
+.+.+ ..+++++|+++|++ ++ .+|..|+||||+|
T Consensus 200 -------------------------------~~~~~-------~~~~v~~Ll~~ga~-~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 200 -------------------------------DNTKF-------VTSMYNEILILGAK-LHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp -------------------------------HHHHH-------HHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHH
T ss_pred -------------------------------hHHHH-------HHHHHHHHHHhhhh-cccccccccccCCCCCCHHHHH
Confidence 00000 15677888888777 54 5788888899988
Q ss_pred HHhCchHHHHHHHhhcc-chhhhhhcccCCCCChh
Q 044420 280 VLHRHANIFNLIYEIGF-TKELMATFKDHDQNNML 313 (545)
Q Consensus 280 ~~~~~~~iv~~Ll~~g~-~~~~~~n~~d~~G~TpL 313 (545)
+.+|+.+++++|+++|+ + ....+..+.+|-
T Consensus 241 ~~~g~~~iv~~Ll~~ga~d----p~~~~~~~~~~~ 271 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREIHE----PECRHAAAHHHH 271 (273)
T ss_dssp HHTTCHHHHHHHHHHHTC-----------------
T ss_pred HHhChHHHHHHHHHCCCCC----chhhhhhhhhcc
Confidence 88888888888888888 4 344555555553
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=246.34 Aligned_cols=157 Identities=23% Similarity=0.294 Sum_probs=135.0
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
++|+.||+.|+.++|+.|++ .|+++|.+|.+|+||||+|+..++.++++.|+++|+++ +.+|.+|.||||+|++.|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~-~~~d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccch-hhhccCCCCHHHHHHHcCC
Confidence 47899999999999999999 79999999999999999999999999999999999997 8899999999999999999
Q ss_pred HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH
Q 044420 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR 207 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 207 (545)
.+++++|+++|++++ .+
T Consensus 83 ~~~v~~Ll~~gadvn-----------------------------------~~---------------------------- 99 (169)
T 4gpm_A 83 KEVVKLLISKGADVN-----------------------------------AK---------------------------- 99 (169)
T ss_dssp HHHHHHHHHTTCCTT-----------------------------------CC----------------------------
T ss_pred HHHHHHHHHCcCCCC-----------------------------------CC----------------------------
Confidence 999999998887522 11
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHH
Q 044420 208 LMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287 (545)
Q Consensus 208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i 287 (545)
|.+|+||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+.+|+.++
T Consensus 100 ---------------------------d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~g~~~i 151 (169)
T 4gpm_A 100 ---------------------------DSDGRTPLHHAAENGHKEVVKLLISKGAD-VNTSDSDGRTPLDLAREHGNEEV 151 (169)
T ss_dssp ---------------------------CTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred ---------------------------CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHcCCHHH
Confidence 24567788888888888999999999999 88999999999999999999999
Q ss_pred HHHHHhhccch
Q 044420 288 FNLIYEIGFTK 298 (545)
Q Consensus 288 v~~Ll~~g~~~ 298 (545)
+++|+++|++.
T Consensus 152 v~~Ll~~GA~i 162 (169)
T 4gpm_A 152 VKLLEKQGGWL 162 (169)
T ss_dssp HHHHHTC----
T ss_pred HHHHHHCCCCc
Confidence 99999999883
|
| >2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-34 Score=273.82 Aligned_cols=214 Identities=15% Similarity=0.095 Sum_probs=173.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCcccc----cccCCCCcHHHHHHHh---CCHHHHHHHHHcCccc----
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLM--KPEDLT----LQDRNGNTAFCFAVAA---GSIHIAKIMLKKNERL---- 107 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~--~~~~~~----~~d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~---- 107 (545)
..|..|+||||.|++.|+.++|+.|++.. .+.+++ .+|..|.||||+|+.. |+.+++++|+++|++.
T Consensus 8 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~ 87 (273)
T 2pnn_A 8 PPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLK 87 (273)
T ss_dssp ---CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHH
T ss_pred CCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchh
Confidence 57899999999999999999999888721 355555 4588999999999987 9999999999998763
Q ss_pred --ccC----CCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCC
Q 044420 108 --LTM----RGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181 (545)
Q Consensus 108 --~~~----~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~ 181 (545)
.+. +|..|.||||+|+..|+.+++++|+++|++++..+..+..
T Consensus 88 ~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~------------------------------- 136 (273)
T 2pnn_A 88 QFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF------------------------------- 136 (273)
T ss_dssp HHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGG-------------------------------
T ss_pred HHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccc-------------------------------
Confidence 122 5678999999999999999999999999985554432200
Q ss_pred CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH--
Q 044420 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-- 259 (545)
Q Consensus 182 ~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-- 259 (545)
.. .+....+..|.||||+|+..|+.+++++|++
T Consensus 137 -----------~~----------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 171 (273)
T 2pnn_A 137 -----------KK----------------------------------TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNS 171 (273)
T ss_dssp -----------SS----------------------------------CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCS
T ss_pred -----------cc----------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 00 0011223678999999999999999999999
Q ss_pred -HCCCcccccccCCCcHHHHHHHhCc---------hHHHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccc
Q 044420 260 -SYPDLVHELDDNNRSIFHIAVLHRH---------ANIFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 260 -~~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
+|++ ++.+|.+|+||||+|+..++ .+++++|+++|++++. .++.+|.+|+||||+|++.|+.++++
T Consensus 172 ~~gad-~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~ 250 (273)
T 2pnn_A 172 WQPAD-ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLA 250 (273)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred cCCCC-ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHH
Confidence 8999 99999999999999999988 7999999999998321 01459999999999999999999999
Q ss_pred cccch
Q 044420 327 IVSGA 331 (545)
Q Consensus 327 ~L~~~ 331 (545)
+|.+.
T Consensus 251 ~Ll~~ 255 (273)
T 2pnn_A 251 YILQR 255 (273)
T ss_dssp HHHHH
T ss_pred HHHHC
Confidence 88543
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=3.1e-32 Score=261.02 Aligned_cols=206 Identities=18% Similarity=0.132 Sum_probs=159.7
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcC--CCCchhhh---hccCCCCCcHHHHHH---HcCCHHHHHHHHHcCCCcc-----
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGN--EDPRSILC---AGIAKGYETLLHLAA---GARQTGFVEELLKLMKPED----- 73 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~---~~~~~~g~T~Lh~A~---~~g~~~~v~~Ll~~~~~~~----- 73 (545)
..++++||.||+.|+.+.++.|++. ..+ ..++ ...+..|+||||+|+ +.|+.+++++|++ .+++
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~-~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~--~g~~~~~~~ 79 (260)
T 3jxi_A 3 VFNRPILFDIVSRGSPDGLEGLLSFLLTHK-KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLD--IAEKTGNMR 79 (260)
T ss_dssp CCCHHHHHHHHHHTCGGGGTTHHHHHHHHT-CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHH--HHHHTTCHH
T ss_pred cchHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHH--hcccccchH
Confidence 4578999999999999965555540 033 3333 123477999999999 7799999999999 4543
Q ss_pred ------cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC--------------CCCCcHHHHHHHcCCHHHHHH
Q 044420 74 ------LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG--------------GENMTPLYMAAVLAQRDMALY 133 (545)
Q Consensus 74 ------~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--------------~~g~tpL~~A~~~g~~~iv~~ 133 (545)
++.+|..|.||||+|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~ 158 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHY 158 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHH
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHHcCCHHHHHH
Confidence 4556668999999999999999999999999997 7777 689999999999999999999
Q ss_pred HHH---cccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHH
Q 044420 134 LYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMH 210 (545)
Q Consensus 134 Ll~---~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~ 210 (545)
|++ +|++ ++.+|.+|+||||+|+..++...
T Consensus 159 Ll~~~~~ga~-----------------------------------~~~~d~~g~TpLh~A~~~~~~~~------------ 191 (260)
T 3jxi_A 159 LTENGHKQAD-----------------------------------LRRQDSRGNTVLHALVAIADNTR------------ 191 (260)
T ss_dssp HHHCSSCCCC-----------------------------------TTCCCTTSCCHHHHHHHHCCSSH------------
T ss_pred HHhccccCCC-----------------------------------CcccCCCCCcHHHHHHHhccCch------------
Confidence 999 6654 45666677777777776553210
Q ss_pred HHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcc-------cccccCCCcHHHHHHHhC
Q 044420 211 SALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLV-------HELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 211 ~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~-------~~~d~~G~t~Lh~A~~~~ 283 (545)
+ ......+++++|+++|++ + +.+|..|+||||+|+..|
T Consensus 192 ---~-------------------------------~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~d~~g~tpL~~A~~~g 236 (260)
T 3jxi_A 192 ---E-------------------------------NTKFVTKMYDLLLIKCAK-LFPDTNLEALLNNDGLSPLMMAAKTG 236 (260)
T ss_dssp ---H-------------------------------HHHHHHHHHHHHHHHHHH-HCTTCCGGGCCCTTSCCHHHHHHHTT
T ss_pred ---h-------------------------------HHHHHHHHHHHHHHhCcc-cccccchhhcccCCCCCHHHHHHHcC
Confidence 0 000125678888888877 5 678999999999999999
Q ss_pred chHHHHHHHhhccch
Q 044420 284 HANIFNLIYEIGFTK 298 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~ 298 (545)
+.+++++|+++|.++
T Consensus 237 ~~~~v~~Ll~~g~~~ 251 (260)
T 3jxi_A 237 KIGIFQHIIRREIAD 251 (260)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCc
Confidence 999999999998874
|
| >4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-31 Score=235.52 Aligned_cols=159 Identities=22% Similarity=0.283 Sum_probs=145.3
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
++|+.||+.|+.++|+.|++ .+ .+++ .+|.+|+||||+|+..++.+++++|++ .|++++.+|.+|+||||+|+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~--~G-advn-~~d~~g~t~l~~a~~~~~~~~~~~ll~--~gad~~~~d~~g~TpLh~A~~ 79 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIE--NG-ADVN-ASDSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAKDSDGRTPLHHAAE 79 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--CC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHh--cccchhhhccCCCCHHHHHHH
Confidence 57999999999999999999 77 7776 789999999999999999999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLE 170 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~ 170 (545)
.|+.++|++|+++|+++ +.+|.+|+||||+|++.|+.+++++|+++|++++..+..|.|||++|+..+. ..+.++|.
T Consensus 80 ~g~~~~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~--~~iv~~Ll 156 (169)
T 4gpm_A 80 NGHKEVVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN--EEVVKLLE 156 (169)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC--HHHHHHHH
T ss_pred cCCHHHHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC--HHHHHHHH
Confidence 99999999999999997 8999999999999999999999999999999999999999999999998765 46778999
Q ss_pred hCCCcccc
Q 044420 171 DHSGLAVA 178 (545)
Q Consensus 171 ~~~~~~~~ 178 (545)
++|++++.
T Consensus 157 ~~GA~ie~ 164 (169)
T 4gpm_A 157 KQGGWLEH 164 (169)
T ss_dssp TC------
T ss_pred HCCCCcCC
Confidence 99998764
|
| >3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-32 Score=260.90 Aligned_cols=210 Identities=15% Similarity=0.059 Sum_probs=171.9
Q ss_pred CCCCCcHHHHHHHcCCHHH----HHHHHHcCCCccccccc----CCCCcHHHHHH---HhCCHHHHHHHHHcCccc----
Q 044420 43 AKGYETLLHLAAGARQTGF----VEELLKLMKPEDLTLQD----RNGNTAFCFAV---AAGSIHIAKIMLKKNERL---- 107 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~~d----~~g~TpLh~A~---~~g~~~iv~~Ll~~~~~~---- 107 (545)
+..|+||||.|++.|+.+. +++|++ .+.+++..+ ..|.||||+|+ ..|+.+++++|++.|++.
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~--~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~ 79 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLT--HKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR 79 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHH--HTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence 5678999999999999995 555555 588888766 67999999999 779999999999998652
Q ss_pred ------ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCC
Q 044420 108 ------LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181 (545)
Q Consensus 108 ------~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~ 181 (545)
.+..|..|.||||+|+..|+.+++++|+++|++++..+..+. ...
T Consensus 80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~--------------------------~~~--- 130 (260)
T 3jxi_A 80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF--------------------------FQP--- 130 (260)
T ss_dssp HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECC--------------------------CSS---
T ss_pred hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccc--------------------------cCc---
Confidence 134455899999999999999999999999988554443110 000
Q ss_pred CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH--
Q 044420 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-- 259 (545)
Q Consensus 182 ~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-- 259 (545)
.+....+..|.||||+|+..|+.+++++|++
T Consensus 131 -----------------------------------------------~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~ 163 (260)
T 3jxi_A 131 -----------------------------------------------KDEGGYFYFGELPLSLAACTNQPHIVHYLTENG 163 (260)
T ss_dssp -----------------------------------------------SCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred -----------------------------------------------ccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 0111223678999999999999999999999
Q ss_pred -HCCCcccccccCCCcHHHHHHHhCc---------hHHHHHHHhhccchhh---hhhcccCCCCChhhhhccCCCCCccc
Q 044420 260 -SYPDLVHELDDNNRSIFHIAVLHRH---------ANIFNLIYEIGFTKEL---MATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 260 -~~~~~~~~~d~~G~t~Lh~A~~~~~---------~~iv~~Ll~~g~~~~~---~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
+|++ ++.+|.+|+||||+|+..++ .+++++|+++|++++. ..+.+|.+|+||||+|++.|+.++++
T Consensus 164 ~~ga~-~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 242 (260)
T 3jxi_A 164 HKQAD-LRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQ 242 (260)
T ss_dssp SCCCC-TTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCC-CcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCHHHHH
Confidence 8999 99999999999999999887 7999999999998321 11779999999999999999999999
Q ss_pred cccch
Q 044420 327 IVSGA 331 (545)
Q Consensus 327 ~L~~~ 331 (545)
+|.+.
T Consensus 243 ~Ll~~ 247 (260)
T 3jxi_A 243 HIIRR 247 (260)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98654
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-33 Score=261.43 Aligned_cols=190 Identities=15% Similarity=0.067 Sum_probs=164.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..+.+|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh 92 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK--EMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLH 92 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh--cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHH
Confidence 456678899999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
+|+..|+.+++++|+++|++++ .++
T Consensus 93 ~A~~~g~~~~v~~Ll~~ga~~~-----------------------------------~~~-------------------- 117 (229)
T 2vge_A 93 CAASCNDTVICMALVQHGAAIF-----------------------------------ATT-------------------- 117 (229)
T ss_dssp HHHHTTCHHHHHHHHTTTCCTT-----------------------------------CCC--------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCcc-----------------------------------ccc--------------------
Confidence 9999999999999999988622 111
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH--HhcCcHHHHHHHHHHCCCcccccccCCCcHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA--AELGNFEFLAELICSYPDLVHELDDNNRSIFHI 278 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A--~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~ 278 (545)
+..|.||||+| +..|+.+++++|+++|++ ++.+|..|.||+|.
T Consensus 118 ----------------------------------~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~~l~~ 162 (229)
T 2vge_A 118 ----------------------------------LSDGATAFEKCDPYREGYADCATYLADVEQS-MGLMNSGAVYALWD 162 (229)
T ss_dssp ----------------------------------SSTTCCTGGGCCTTSTTHHHHHHHHHHHHHH-TTTSGGGEEEESSC
T ss_pred ----------------------------------CCCCCCHHHHHHHHhcChHHHHHHHHHcCCC-cccccCCchHHHHH
Confidence 13456666666 677889999999999999 89999999999997
Q ss_pred HHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 279 AVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 279 A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
++..+.. ++|++.|++.+ ++.+|.+|+||||+|++.|+.++++..
T Consensus 163 ~~~~~~~---~~ll~~ga~~~--~~~~d~~G~TpL~~A~~~g~~~~v~~~ 207 (229)
T 2vge_A 163 YSAEFGD---ELSFREGESVT--VLRRDGPEETDWWWAALHGQEGYVPRN 207 (229)
T ss_dssp BCCSSTT---BCCBCTTCEEE--EEESSCTTCSSEEEEEETTEEEEEEGG
T ss_pred Hhhcccc---ccCcccccccc--ccccCCCcccHHHHHHHcCCcceeehh
Confidence 6655433 57788888754 678999999999999999999998764
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4e-31 Score=255.41 Aligned_cols=190 Identities=15% Similarity=0.123 Sum_probs=104.6
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCCcHHHHH
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPE-DLTLQDRNGNTAFCFA 88 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~-~~~~~d~~g~TpLh~A 88 (545)
.+++|.|+..|+.+.++.+++ ... ....+..|.+|+||||+|+..|+.+++++|++ .|+ +++.+|..|.||||+|
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~-~~~-~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~--~g~~~~~~~~~~g~tpL~~a 152 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSA-RLL-DYVVNIADSNGNTALHYSVSHANFPVVQQLLD--SGVCKVDKQNRAGYSPIMLT 152 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCH-HHH-HHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHH--TSCCCTTCCCTTSCCHHHHG
T ss_pred ccCCCHHHHHHHHHHHHHHHH-HHH-hhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHH--CCCCcCCCCCCCCCCHHHHH
Confidence 344555555555555555554 111 11122445555555555555555555555555 344 5555555555555555
Q ss_pred H-----HhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 89 V-----AAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 89 ~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
+ ..++.++++.|++.|.+. +..+..|.||||+|+..|+.+++++|+++|+++
T Consensus 153 ~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~---------------------- 209 (276)
T 4hbd_A 153 ALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALMLAVSHGRVDVVKALLACEADV---------------------- 209 (276)
T ss_dssp GGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT----------------------
T ss_pred HHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC----------------------
Confidence 5 344555555555555443 444555555555555555555555555554431
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLF 243 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh 243 (545)
+..|.+|.||||
T Consensus 210 --------------------------------------------------------------------n~~d~~G~TpLh 221 (276)
T 4hbd_A 210 --------------------------------------------------------------------NVQDDDGSTALM 221 (276)
T ss_dssp --------------------------------------------------------------------TCCCTTSCCHHH
T ss_pred --------------------------------------------------------------------CCCCCCCCCHHH
Confidence 112244566666
Q ss_pred HHHhcCcHHHHHHHHH-HCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhc
Q 044420 244 DAAELGNFEFLAELIC-SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295 (545)
Q Consensus 244 ~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g 295 (545)
+|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+.+|+.+++++|++++
T Consensus 222 ~A~~~g~~~iv~~Ll~~~gad-~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 222 CACEHGHKEIAGLLLAVPSCD-ISLTDRDGSTALMVALDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHHHTCHHHHHHHHTSTTCC-TTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred HHHHCCCHHHHHHHHhcCCCC-CcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 6666666777777776 5666 6667777777777777777777777776653
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=231.89 Aligned_cols=170 Identities=15% Similarity=0.106 Sum_probs=126.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
+.||||.|+..|+.++++.|++. .+..++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRK-GDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADP-HILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTT-CSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHc-CcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-hhhcccCCCHHHHHHHC
Confidence 46788888888888888888873 23337778888888888888888888888888888886 77788888888888888
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
|+.+++++|+++|++++ .
T Consensus 80 ~~~~~v~~Ll~~g~~~~-----------------------------------~--------------------------- 97 (172)
T 3v30_A 80 GYTDIVGLLLERDVDIN-----------------------------------I--------------------------- 97 (172)
T ss_dssp TCHHHHHHHHTTTCCTT-----------------------------------C---------------------------
T ss_pred CCHHHHHHHHHcCCCCC-----------------------------------C---------------------------
Confidence 88888888887776411 1
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.
T Consensus 98 ----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A~~~~~~ 148 (172)
T 3v30_A 98 ----------------------------YDWNGGTPLLYAVRGNHVKCVEALLARGAD-LTTEADSGYTPMDLAVALGYR 148 (172)
T ss_dssp ----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTCH
T ss_pred ----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-ccccCCCCCCHHHHHHHhCcH
Confidence 124567777777777788888888888888 788888888888888888888
Q ss_pred HHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 286 NIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 286 ~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
+++++|+++|++ +..++..|.||
T Consensus 149 ~~~~~L~~~~~~----~~~~~~~~~~p 171 (172)
T 3v30_A 149 KVQQVIENHILK----LFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHHHHH----HSCC-------
T ss_pred HHHHHHHHHHHH----HhcccCCCCCC
Confidence 888888888887 56677777776
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-30 Score=235.83 Aligned_cols=162 Identities=18% Similarity=0.213 Sum_probs=146.5
Q ss_pred hccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 40 AGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 40 ~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
+.+|..|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.|||
T Consensus 29 n~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L 105 (192)
T 2rfm_A 29 NYRDSYNRTPLMVACMLGMENAIDKLVE--NFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNV-NTKDFSGKTPL 105 (192)
T ss_dssp TCCCTTCCCHHHHHHHHTCGGGHHHHHH--HHCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHH
T ss_pred hCcCCCCCCHHHHHHHcCCHHHHHHHHH--hccccccccccCccHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHH
Confidence 3678999999999999999999999999 68999999999999999999999999999999999997 88999999999
Q ss_pred HHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccc
Q 044420 120 YMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFAS 199 (545)
Q Consensus 120 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~ 199 (545)
|+|+..|+.+++++|+++|++++ .
T Consensus 106 ~~A~~~~~~~~v~~Ll~~g~~~~-----------------------------------~--------------------- 129 (192)
T 2rfm_A 106 MWSIIFGYSEMSYFLLEHGANVN-----------------------------------D--------------------- 129 (192)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCSS-----------------------------------C---------------------
T ss_pred HHHHHcCCHHHHHHHHHCCCCCC-----------------------------------C---------------------
Confidence 99999999999999999887521 1
Q ss_pred cccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHH
Q 044420 200 RNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIA 279 (545)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A 279 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|
T Consensus 130 ----------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~t~l~~A 174 (192)
T 2rfm_A 130 ----------------------------------RNLEGETPLIVASKYGRSEIVKKLLELGAD-ISARDLTGLTAEASA 174 (192)
T ss_dssp ----------------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHH
T ss_pred ----------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHH
Confidence 125568888888888999999999999999 899999999999999
Q ss_pred HHhCchHHHHHHHhhc
Q 044420 280 VLHRHANIFNLIYEIG 295 (545)
Q Consensus 280 ~~~~~~~iv~~Ll~~g 295 (545)
+..|+.+++++|+++|
T Consensus 175 ~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 175 RIFGRQEVIKIFTEVR 190 (192)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHhcc
Confidence 9999999999999875
|
| >4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.7e-31 Score=254.96 Aligned_cols=189 Identities=17% Similarity=0.237 Sum_probs=149.6
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCc-ccccCCCCCCCcHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNE-RLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~-~~~~~~~~~g~tpL~~A~ 123 (545)
.+.+++|.|+..|+.+.++.+++...+..+|.+|.+|+||||+|+..|+.+++++|++.|+ ++ +..|..|.||||+|+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~-~~~~~~g~tpL~~a~ 153 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKV-DKQNRAGYSPIMLTA 153 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHGG
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcC-CCCCCCCCCHHHHHH
Confidence 3556777777777777777777632222367777777777777777777777777777776 43 677777777777777
Q ss_pred -----HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcc
Q 044420 124 -----VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFA 198 (545)
Q Consensus 124 -----~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~ 198 (545)
..++.+++++|++.|.+
T Consensus 154 ~~~~~~~~~~~~v~~Ll~~g~~---------------------------------------------------------- 175 (276)
T 4hbd_A 154 LATLKTQDDIETVLQLFRLGNI---------------------------------------------------------- 175 (276)
T ss_dssp GCCCCSHHHHHHHHHHHHHSCT----------------------------------------------------------
T ss_pred HHHhhhhhhHHHHHHHHHcCCC----------------------------------------------------------
Confidence 45666666666666543
Q ss_pred ccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHH
Q 044420 199 SRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHI 278 (545)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~ 278 (545)
....+..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+
T Consensus 176 --------------------------------~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~ 222 (276)
T 4hbd_A 176 --------------------------------NAKASQAGQTALMLAVSHGRVDVVKALLACEAD-VNVQDDDGSTALMC 222 (276)
T ss_dssp --------------------------------TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHH
T ss_pred --------------------------------ccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC-CCCCCCCCCCHHHH
Confidence 111235678999999999999999999999999 99999999999999
Q ss_pred HHHhCchHHHHHHHh-hccchhhhhhcccCCCCChhhhhccCCCCCcccccc
Q 044420 279 AVLHRHANIFNLIYE-IGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 279 A~~~~~~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
|+..|+.+++++|++ .|++ ++.+|.+|+||||+|+..|+.+++++|.
T Consensus 223 A~~~g~~~iv~~Ll~~~gad----~~~~d~~g~TpL~~A~~~g~~~iv~~Ll 270 (276)
T 4hbd_A 223 ACEHGHKEIAGLLLAVPSCD----ISLTDRDGSTALMVALDAGQSEIASMLY 270 (276)
T ss_dssp HHHHTCHHHHHHHHTSTTCC----TTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred HHHCCCHHHHHHHHhcCCCC----CcCcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 999999999999999 8998 7889999999999999999999998874
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.2e-30 Score=226.80 Aligned_cols=159 Identities=17% Similarity=0.128 Sum_probs=121.4
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
...||||.|+..|+.+++++|++ .+.+++.+|..|+||||+|+. |+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 79 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANP-DLKDRTGFAVIHDAAR 79 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh--CCCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHH
Confidence 45678888888888888888887 677888888888888888877 8888888888888876 7778888888888888
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.|+.+++++|+++|++++ .
T Consensus 80 ~~~~~~v~~Ll~~g~~~~-----------------------------------~-------------------------- 98 (162)
T 1ihb_A 80 AGFLDTLQTLLEFQADVN-----------------------------------I-------------------------- 98 (162)
T ss_dssp HTCHHHHHHHHHTTCCTT-----------------------------------C--------------------------
T ss_pred cCCHHHHHHHHHcCCCCC-----------------------------------C--------------------------
Confidence 888888888887776411 1
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
.|..|.||||+|++.|+.+++++|++++++.++.+|..|+||||+|+..++
T Consensus 99 -----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~ 149 (162)
T 1ihb_A 99 -----------------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGR 149 (162)
T ss_dssp -----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTC
T ss_pred -----------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCC
Confidence 124456777777777777888888888887567788888888888888888
Q ss_pred hHHHHHHHhhccc
Q 044420 285 ANIFNLIYEIGFT 297 (545)
Q Consensus 285 ~~iv~~Ll~~g~~ 297 (545)
.+++++|+++|++
T Consensus 150 ~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 150 NEVVSLMQANGAG 162 (162)
T ss_dssp HHHHHHHHHTC--
T ss_pred HHHHHHHHHhCCC
Confidence 8888888888764
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=225.29 Aligned_cols=159 Identities=16% Similarity=0.153 Sum_probs=140.5
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
.|.||||.|+..|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP-QLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHH
Confidence 57899999999999999999999 68889999999999999999999999999999999987 8889999999999999
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.|+.+++++|+++|++++ .
T Consensus 79 ~~~~~~v~~Ll~~g~~~~-----------------------------------~-------------------------- 97 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVN-----------------------------------E-------------------------- 97 (167)
T ss_dssp HTCHHHHHHHHHHTCCTT-----------------------------------C--------------------------
T ss_pred cCCHHHHHHHHHCCCCCC-----------------------------------c--------------------------
Confidence 999999999998887521 1
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..|+
T Consensus 98 -----------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~~~~ 147 (167)
T 3v31_A 98 -----------------------------YDWNGGTPLLYAVHGNHVKCVKMLLESGAD-PTIETDSGYNSMDLAVALGY 147 (167)
T ss_dssp -----------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHHTC
T ss_pred -----------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCc
Confidence 124567888888888889999999999999 88899999999999999999
Q ss_pred hHHHHHHHhhccc
Q 044420 285 ANIFNLIYEIGFT 297 (545)
Q Consensus 285 ~~iv~~Ll~~g~~ 297 (545)
.+++++|++++.+
T Consensus 148 ~~~~~~L~~~~~~ 160 (167)
T 3v31_A 148 RSVQQVIESHLLK 160 (167)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999998766
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=224.10 Aligned_cols=160 Identities=21% Similarity=0.290 Sum_probs=140.5
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
....+.||||.|++.|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~ 86 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA--NGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADV-NAVDHAGMTPLRL 86 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHH
Confidence 45667899999999999999999999 79999999999999999999999999999999999997 8899999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccc
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~ 201 (545)
|+..|+.+++++|+++|++++ .
T Consensus 87 A~~~~~~~~~~~Ll~~g~~~~-----------------------------------~----------------------- 108 (169)
T 2y1l_E 87 AALFGHLEIVEVLLKNGADVN-----------------------------------A----------------------- 108 (169)
T ss_dssp HHHTTCHHHHHHHHHTTCCTT-----------------------------------C-----------------------
T ss_pred HHHcCCHHHHHHHHHcCCCCC-----------------------------------C-----------------------
Confidence 999999999999999887521 1
Q ss_pred cchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHH
Q 044420 202 QGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281 (545)
Q Consensus 202 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~ 281 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.
T Consensus 109 --------------------------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~l~~A~~ 155 (169)
T 2y1l_E 109 --------------------------------NDMEGHTPLHLAAMFGHLEIVEVLLKNGAD-VNAQDKFGKTAFDISID 155 (169)
T ss_dssp --------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred --------------------------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence 124567888888888899999999999999 88999999999999999
Q ss_pred hCchHHHHHHHhhc
Q 044420 282 HRHANIFNLIYEIG 295 (545)
Q Consensus 282 ~~~~~iv~~Ll~~g 295 (545)
+++.+++++|++.|
T Consensus 156 ~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 156 NGNEDLAEILQKLN 169 (169)
T ss_dssp TTCHHHHHHHHTC-
T ss_pred hCCHHHHHHHHHcC
Confidence 99999999999875
|
| >3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-29 Score=225.45 Aligned_cols=170 Identities=14% Similarity=0.074 Sum_probs=149.6
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFA 88 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 88 (545)
+.||||.||..|+.+.++.|++ .+ ....+..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~--~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A 76 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLR--KG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLE--WGADPHILAKERESALSLA 76 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHT--TC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHH--cC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCchhhcccCCCHHHHH
Confidence 5689999999999999999999 44 44344789999999999999999999999999 7999999999999999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHH
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~l 168 (545)
+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. ..+.++
T Consensus 77 ~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~--~~~~~~ 153 (172)
T 3v30_A 77 STGGYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGY--RKVQQV 153 (172)
T ss_dssp HHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTC--HHHHHH
T ss_pred HHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCc--HHHHHH
Confidence 9999999999999999997 8999999999999999999999999999999999999999999999998876 467788
Q ss_pred HHhCCCcccccCCCCchH
Q 044420 169 LEDHSGLAVARDGNYETA 186 (545)
Q Consensus 169 L~~~~~~~~~~d~~g~tp 186 (545)
|.+++.+...++..|.||
T Consensus 154 L~~~~~~~~~~~~~~~~p 171 (172)
T 3v30_A 154 IENHILKLFQSNLVPADP 171 (172)
T ss_dssp HHHHHHHHSCC-------
T ss_pred HHHHHHHHhcccCCCCCC
Confidence 888888888888888887
|
| >2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.7e-30 Score=232.99 Aligned_cols=162 Identities=14% Similarity=0.064 Sum_probs=148.1
Q ss_pred ccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 73 DLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 73 ~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
.++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 27 ~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~---------- 95 (192)
T 2rfm_A 27 LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL-EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN---------- 95 (192)
T ss_dssp HHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTT----------
T ss_pred HHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccc-ccccccCccHHHHHHHcCCHHHHHHHHHCCCCCC----------
Confidence 56788999999999999999999999999999997 8899999999999999999999999999887521
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhh
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFT 232 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 232 (545)
.
T Consensus 96 -------------------------~------------------------------------------------------ 96 (192)
T 2rfm_A 96 -------------------------T------------------------------------------------------ 96 (192)
T ss_dssp -------------------------C------------------------------------------------------
T ss_pred -------------------------C------------------------------------------------------
Confidence 1
Q ss_pred hhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 233 DLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 233 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
.+..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..++.+++++|+++|++ ++.+|..|+||
T Consensus 97 -~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~----~~~~~~~g~t~ 170 (192)
T 2rfm_A 97 -KDFSGKTPLMWSIIFGYSEMSYFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGAD----ISARDLTGLTA 170 (192)
T ss_dssp -CCTTSCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----TTCBCTTSCBH
T ss_pred -CCCCCCcHHHHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCCcCCCCCCH
Confidence 125568888888999999999999999999 899999999999999999999999999999999 78899999999
Q ss_pred hhhhccCCCCCccccccc
Q 044420 313 LHLAAKSPHPSRVSIVSG 330 (545)
Q Consensus 313 Lh~A~~~~~~~~~~~L~~ 330 (545)
||+|+..|+.+++++|.+
T Consensus 171 l~~A~~~~~~~~v~~Ll~ 188 (192)
T 2rfm_A 171 EASARIFGRQEVIKIFTE 188 (192)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHhCcHHHHHHHHh
Confidence 999999999999988753
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-32 Score=270.95 Aligned_cols=266 Identities=12% Similarity=0.037 Sum_probs=174.4
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchh--hhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCC
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSI--LCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNG 81 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~--~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g 81 (545)
.+++||||.||+.|+.++|++|++ .+ .. .....+..|.||||+||+.|+.++|++|++ +|++ .+..+.+
T Consensus 90 ~~~~T~Lh~Aa~~G~~e~v~~Ll~--~g-a~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~--~gad~~~~~i~~~~- 163 (376)
T 2aja_A 90 IKSEVICFVAAITGCSSALDTLCL--LL-TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAEN- 163 (376)
T ss_dssp CCHHHHHHHHHHHCCHHHHHHHTT--C---CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHHH-
T ss_pred CCcCCHHHHHHHcCCHHHHHHHHH--cC-CcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHh--CCCCccccccCCCC-
Confidence 345699999999999999999998 44 31 111334567889999999999999999998 6754 2222223
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccC--CCCCCCcHHHHHH-HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTM--RGGENMTPLYMAA-VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~--~~~~g~tpL~~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
.||||+|+..|+.++|++|+++|+++ +. .|..|.||||+|+ .+|+.++|++|+++|++ +.||+++|+..
T Consensus 164 ~TpLh~Aa~~G~~eiv~~Ll~~ga~~-~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~ 235 (376)
T 2aja_A 164 YHAFRLAAENGHLHVLNRLCELAPTE-ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEY 235 (376)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGG-HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTT
T ss_pred CCHHHHHHHCCCHHHHHHHHHcCCcc-chhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHC
Confidence 89999999999999999999999986 54 7778899999999 99999999999987753 78888888776
Q ss_pred cCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCC
Q 044420 159 TDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKP 238 (545)
Q Consensus 159 ~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g 238 (545)
+.. + +.++|.+.+++++..+ ++++.|+..|+.+.+.... ......+++.++..+
T Consensus 236 g~~-e-vv~lL~~~ga~~~~~~----~~l~~A~~~g~~~vv~~~~---------~~~~~~~~~~li~~~----------- 289 (376)
T 2aja_A 236 GEK-Y-VNPFIARHVNRLKEMH----DAFKLSNPDGVFDLVTKSE---------CLQGFYMLRNLIRRN----------- 289 (376)
T ss_dssp TTT-T-HHHHHHHHHHHHHHHH----TTTTTTSSSSCCCCSSHHH---------HHHHHHHHHHHHHHC-----------
T ss_pred CCH-H-HHHHHHhcCccccccc----HHHHHHHHCCChhhhcHHh---------hhhhHHHHHHHHHcc-----------
Confidence 554 4 6677777777766554 4778888888776432100 000111222222222
Q ss_pred ChHHHHHHhcCcHHHHHHHHHHCCCc----ccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 239 SHLLFDAAELGNFEFLAELICSYPDL----VHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 239 ~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
..+..+.+++|++.+.-- .......+.||||+|+..|+.+++++|++.|.. +|..|+|++.
T Consensus 290 --------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~~v-------~~~~~~~~~~ 354 (376)
T 2aja_A 290 --------DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSV-------LALTKANNYY 354 (376)
T ss_dssp --------CGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSHHH-------HHSCC-----
T ss_pred --------hhhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcChHH-------HHHHHHhccc
Confidence 123466777777643210 112234677999999999999999999987543 7899999999
Q ss_pred hhccCCCCCcccc
Q 044420 315 LAAKSPHPSRVSI 327 (545)
Q Consensus 315 ~A~~~~~~~~~~~ 327 (545)
+|-..|+.++.+.
T Consensus 355 ~~~~~~~~~~~~~ 367 (376)
T 2aja_A 355 INETGGRLDLRAV 367 (376)
T ss_dssp -------------
T ss_pred cccccccccHHHH
Confidence 9999999887755
|
| >2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-32 Score=271.30 Aligned_cols=261 Identities=11% Similarity=0.039 Sum_probs=141.2
Q ss_pred CHHhHHHHH-cCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCCCcHH
Q 044420 10 CVPLQKAAL-KGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNGNTAF 85 (545)
Q Consensus 10 ~t~L~~Aa~-~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpL 85 (545)
.++++.|+. .++.+.++++++ .+ .+++||||+|++.|+.++|++|++ .++. .+..|..|.|||
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~--~g---------~~~~T~Lh~Aa~~G~~e~v~~Ll~--~ga~~~~~~~~~~~~~tpL 132 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHK--KG---------IKSEVICFVAAITGCSSALDTLCL--LLTSDEIVKVIQAENYQAF 132 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHH--HT---------CCHHHHHHHHHHHCCHHHHHHHTT--C--CCSSCC--CHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHH--cC---------CCcCCHHHHHHHcCCHHHHHHHHH--cCCcHHHHHHhccCCCCHH
Confidence 345555555 355666666655 22 233477777777777777777777 4541 123344566777
Q ss_pred HHHHHhCCHHHHHHHHHcCccc--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERL--LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
|+|+..|+.++|++|+++|++. .+..+.+ .||||+|+..|+.++|++|+++|++++.
T Consensus 133 ~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~-------------------- 191 (376)
T 2aja_A 133 RLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEAT-------------------- 191 (376)
T ss_dssp HHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHH--------------------
T ss_pred HHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccch--------------------
Confidence 7777777777777777777531 0222222 6777777777777777777777765332
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHH-hCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLA-RKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
+.+|.+|.||||+|+ ..|+. ++ ++.|++.+ ..|.|||
T Consensus 192 -------------~~~d~~g~TpL~~Aa~~~G~~-----------------ei----v~~Ll~~g--------a~~~taL 229 (376)
T 2aja_A 192 -------------AMIQAENYYAFRWAAVGRGHH-----------------NV----INFLLDCP--------VMLAYAE 229 (376)
T ss_dssp -------------HHHHHHHHHHHHHHHSTTCCH-----------------HH----HHHHTTSH--------HHHHHHH
T ss_pred -------------hccCCCCCCHHHHHHHHCCCH-----------------HH----HHHHHhCC--------CccchHH
Confidence 004444556666666 55543 22 23333322 1245666
Q ss_pred HHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc---------------------------hHHHHHHHhhc
Q 044420 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH---------------------------ANIFNLIYEIG 295 (545)
Q Consensus 243 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~---------------------------~~iv~~Ll~~g 295 (545)
|.|+..|+.+++++|+++|++ ++..| ++++.|+.+|+ .+.+++|++.+
T Consensus 230 ~~Aa~~g~~evv~lL~~~ga~-~~~~~----~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~~~~~~~~~~Ll~~~ 304 (376)
T 2aja_A 230 IHEFEYGEKYVNPFIARHVNR-LKEMH----DAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIP 304 (376)
T ss_dssp HCTTTTTTTTHHHHHHHHHHH-HHHHH----TTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCCGGGHHHHHHHHTST
T ss_pred HHHHHCCCHHHHHHHHhcCcc-ccccc----HHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcchhhHHHHHHHHHhCh
Confidence 666666666666666666555 33332 13333443333 34455555433
Q ss_pred cchhh-hhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChhhhhHhhhh
Q 044420 296 FTKEL-MATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPRELFSIEHS 373 (545)
Q Consensus 296 ~~~~~-~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl~~a~~~~~ 373 (545)
..... .....++.++||||+|++.|+.+++++|.+. ...++..|+||+++|..++.
T Consensus 305 ~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~----------------------~~v~~~~~~~~~~~~~~~~~ 361 (376)
T 2aja_A 305 GIKALAPTATIPGDANELLRLALRLGNQGACALLLSI----------------------PSVLALTKANNYYINETGGR 361 (376)
T ss_dssp TTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS----------------------HHHHHSCC------------
T ss_pred hhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcC----------------------hHHHHHHHHhcccccccccc
Confidence 21110 0122345688999999999999999998643 25678889999999876654
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-30 Score=242.81 Aligned_cols=215 Identities=13% Similarity=0.135 Sum_probs=136.3
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
..|.||||.|++.|+.+.++.|++ +|++++. +..|.||||.|+..|+.++++.|++.|+++ +.+|..|.||||+|+
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~ 78 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA--HGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDP-SLPNDEGITALHNAV 78 (239)
T ss_dssp -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSC-CCCCTTSCCHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc--cCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 458888888888888888888888 7888875 467888888888888888888888888886 788888888888888
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..|+.+++++|+++|++++ .
T Consensus 79 ~~g~~~~v~~Ll~~ga~~~-----------------------------------~------------------------- 98 (239)
T 1ycs_B 79 CAGHTEIVKFLVQFGVNVN-----------------------------------A------------------------- 98 (239)
T ss_dssp HHTCHHHHHHHHHHTCCTT-----------------------------------C-------------------------
T ss_pred HcCCHHHHHHHHHcCCCCC-----------------------------------c-------------------------
Confidence 8888888888888877521 1
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCC-cHHHHH--H
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNR-SIFHIA--V 280 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~-t~Lh~A--~ 280 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|. ||||+| +
T Consensus 99 ------------------------------~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~~~~t~l~~a~~~ 147 (239)
T 1ycs_B 99 ------------------------------ADSDGWTPLHCAASCNNVQVCKFLVESGAA-VFAMTYSDMQTAADKCEEM 147 (239)
T ss_dssp ------------------------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCSSSCCCHHHHCCSS
T ss_pred ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-cceecCCCCcchHHHHHHh
Confidence 124567777777888888889999998888 788887776 999999 7
Q ss_pred HhCchHHHHHHHhhccchhhhhh------cccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccc
Q 044420 281 LHRHANIFNLIYEIGFTKELMAT------FKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFR 354 (545)
Q Consensus 281 ~~~~~~iv~~Ll~~g~~~~~~~n------~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~ 354 (545)
..|+.+++++|+++|++.+. .+ ..|..|.||++++.+.|. +++.+....-. +..|. ..
T Consensus 148 ~~g~~~~~~~Ll~~~a~~~~-~~~~~~~al~d~~~~~~~eLa~~~G~--~i~vl~~~~~~---~~~Ww----------~~ 211 (239)
T 1ycs_B 148 EEGYTQCSQFLYGVQEKMGI-MNKGVIYALWDYEPQNDDELPMKEGD--CMTIIHREDED---EIEWW----------WA 211 (239)
T ss_dssp STTCCCHHHHHHHHHHHTTT-TGGGEEEESSCBCCSSTTBCCBCSSC--EEEECCCCTTS---CSSEE----------EE
T ss_pred hhccHHHHHHHHHhhhcccc-cccceEEEEeccCCCCCCcccccCCC--EEEEEEecCCC---CCCEE----------EE
Confidence 88899999999999888543 22 237889999999999885 55555321100 00010 12
Q ss_pred cccCCCCCChhhhhH
Q 044420 355 EMKNSEGKTPRELFS 369 (545)
Q Consensus 355 ~~~n~~G~Tpl~~a~ 369 (545)
...++.|.+|.++..
T Consensus 212 ~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 212 RLNDKEGYVPRNLLG 226 (239)
T ss_dssp EETTEEEEEEGGGEE
T ss_pred EECCcEEEeehHHee
Confidence 356788999998864
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5e-29 Score=224.46 Aligned_cols=169 Identities=15% Similarity=0.118 Sum_probs=135.5
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+++.+|||.|+..|+.+++++|++. .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~ 80 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDN-TENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARI-NVMNRGDDTPLHLAA 80 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHC-TTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhc-CcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CCcCCCCCCHHHHHH
Confidence 4577888888888888888888884 47778888888888888888888888888888888886 788888888888888
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..|+.+++++|+++|++++ .
T Consensus 81 ~~~~~~~v~~Ll~~g~~~~-----------------------------------~------------------------- 100 (179)
T 3f6q_A 81 SHGHRDIVQKLLQYKADIN-----------------------------------A------------------------- 100 (179)
T ss_dssp HTTCHHHHHHHHHTTCCTT-----------------------------------C-------------------------
T ss_pred HcCCHHHHHHHHHcCCCCC-----------------------------------c-------------------------
Confidence 8888888888888876521 1
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~ 283 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+..+
T Consensus 101 ------------------------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~~~~g~tpl~~A~~~~ 149 (179)
T 3f6q_A 101 ------------------------------VNEHGNVPLHYACFWGQDQVAEDLVANGAL-VSICNKYGEMPVDKAKAPL 149 (179)
T ss_dssp ------------------------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-SSBCCTTSCCGGGGSCHHH
T ss_pred ------------------------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-cchhccCCCCcHHHHHHHH
Confidence 124567777777778888888888888888 8888999999999999999
Q ss_pred chHHHHHHHhhccchhhhhhcccCCC
Q 044420 284 HANIFNLIYEIGFTKELMATFKDHDQ 309 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~~~~~n~~d~~G 309 (545)
+.+++++|+++|++ ++..+.++
T Consensus 150 ~~~~~~~L~~~g~~----~~~~~~~~ 171 (179)
T 3f6q_A 150 RELLRERAEKMGQN----LNRIPYKD 171 (179)
T ss_dssp HHHHHHHHHHTTCC----CSCBCCCC
T ss_pred HHHHHHHHHHhhcC----cccCCccc
Confidence 99999999999888 45555443
|
| >1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=221.26 Aligned_cols=125 Identities=19% Similarity=0.188 Sum_probs=117.5
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+..||||.|++.|+.+++++|++ .+ .+++ ..|..|+||||+|+. |+.+++++|++ .|++++.+|..|.||||+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~--~~-~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 76 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQ--NN-VNVN-AQNGFGRTALQVMKL-GNPEIARRLLL--RGANPDLKDRTGFAVIHD 76 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTT--SC-CCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred hHhhHHHHHHHcCCHHHHHHHHh--CC-CCcc-ccCccCccHHHHHHc-CcHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence 46799999999999999999999 56 5665 788999999999999 99999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|++.|+.+++++|+++|++
T Consensus 77 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~ 128 (162)
T 1ihb_A 77 AARAGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTAS 128 (162)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCC
Confidence 99999999999999999997 89999999999999999999999999999885
|
| >2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=4e-31 Score=247.78 Aligned_cols=185 Identities=18% Similarity=0.101 Sum_probs=165.3
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
....++.||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+|
T Consensus 16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~d~~g~tpLh~A~~~g~~~~v~~Ll~--~ga~~n~~d~~g~t 89 (229)
T 2vge_A 16 RARLNPLVLLLDAALTGELEVVQQAVK--EM-NDPS-QPNEEGITALHNAICGANYSIVDFLIT--AGANVNSPDSHGWT 89 (229)
T ss_dssp CTTSCHHHHHHHHHHHTCHHHHHHHHH--HS-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCC
T ss_pred ccccchhHHHHHHHHcCCHHHHHHHHh--cC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCCCCCCCCC
Confidence 455678899999999999999999999 56 6665 789999999999999999999999999 89999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHH--HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMA--AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|||+|+..|+.+++++|+++|+++ +.++ .+|.||||+| +..|+.+++++|+++|++++..+..+.++++.++....
T Consensus 90 pLh~A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~ 168 (229)
T 2vge_A 90 PLHCAASCNDTVICMALVQHGAAI-FATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFG 168 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCCT-TCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSST
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccc
Confidence 999999999999999999999998 6665 7999999999 99999999999999999988888888888887665543
Q ss_pred cHHHHHHHHHhCCCc--ccccCCCCchHHHHHHhCCCCcccc
Q 044420 161 LHDLALKLLEDHSGL--AVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 161 ~~~~~~~lL~~~~~~--~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
. +++.+.|.+ ++.+|.+|+||||+|+..|+.+.++
T Consensus 169 ~-----~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~ 205 (229)
T 2vge_A 169 D-----ELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205 (229)
T ss_dssp T-----BCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEE
T ss_pred c-----ccCccccccccccccCCCcccHHHHHHHcCCcceee
Confidence 3 566777887 6788999999999999999887653
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=221.04 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=61.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 43 AKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 43 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
|.+|.||||.|++.|+.++++.|++. .+.+++..|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A 82 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCTV-QSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV-HAKDKGGLVPLHNA 82 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCCT-TTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHHc-CCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCC-CccCCCCCCHHHHH
Confidence 45566666666666666666666664 44555666666666666666666666666666666665 56666666666666
Q ss_pred HHcCCHHHHHHHHHcccC
Q 044420 123 AVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~ 140 (545)
+..|+.+++++|+++|++
T Consensus 83 ~~~~~~~~v~~Ll~~g~~ 100 (165)
T 3twr_A 83 CSYGHYEVAELLVKHGAV 100 (165)
T ss_dssp HHTTCHHHHHHHHHTTCC
T ss_pred HHcCcHHHHHHHHhCCCC
Confidence 666666666666666553
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=213.85 Aligned_cols=90 Identities=23% Similarity=0.238 Sum_probs=58.0
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA 126 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 126 (545)
.||||.|++.|+.+++++|++ .+.+++ .|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~--~g~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~ 78 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEG 78 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred cHHHHHHHHcCCHHHHHHHHH--cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 456666666666666666666 455554 3556666666666666666666666666665 566666666666666666
Q ss_pred CHHHHHHHHHcccC
Q 044420 127 QRDMALYLYDDAKA 140 (545)
Q Consensus 127 ~~~iv~~Ll~~~~~ 140 (545)
+.+++++|+++|++
T Consensus 79 ~~~~v~~Ll~~g~~ 92 (153)
T 1awc_B 79 HANIVEVLLKHGAD 92 (153)
T ss_dssp CHHHHHHHHTTTCC
T ss_pred hHHHHHHHHHcCCC
Confidence 66666666666553
|
| >3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=219.98 Aligned_cols=169 Identities=14% Similarity=0.072 Sum_probs=152.6
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.++.++||.||..|+.++++.|++ ..+ .+++ ..+..|+||||+|+..|+.+++++|++ .|++++.+|..|.||||
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~ 77 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLD-NTE-NDLN-QGDDHGFSPLHWACREGRSAVVEMLIM--RGARINVMNRGDDTPLH 77 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHH-CTT-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh-cCc-cccc-ccCCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCCHHH
Confidence 468899999999999999999999 444 4454 789999999999999999999999999 89999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLAL 166 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~ 166 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. ..+.
T Consensus 78 ~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~--~~~~ 154 (179)
T 3f6q_A 78 LAASHGHRDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLR--ELLR 154 (179)
T ss_dssp HHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHH--HHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHH--HHHH
Confidence 999999999999999999997 8999999999999999999999999999999999999999999999977654 5778
Q ss_pred HHHHhCCCcccccCCCC
Q 044420 167 KLLEDHSGLAVARDGNY 183 (545)
Q Consensus 167 ~lL~~~~~~~~~~d~~g 183 (545)
++|.+.|++++..+..+
T Consensus 155 ~~L~~~g~~~~~~~~~~ 171 (179)
T 3f6q_A 155 ERAEKMGQNLNRIPYKD 171 (179)
T ss_dssp HHHHHTTCCCSCBCCCC
T ss_pred HHHHHhhcCcccCCccc
Confidence 89999999988776654
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=213.63 Aligned_cols=154 Identities=18% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
+.||||.|+..|+.++++.|++. .+.+++.+|..|.||||+ +..|+.+++++|+++|+++ +.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASP-NVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHc
Confidence 45677777777777777777763 344666677777777777 6667777777777777765 66667777777777777
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
|+.+++++|+++|++++ .+
T Consensus 79 ~~~~~v~~Ll~~g~~~~-----------------------------------~~-------------------------- 97 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADVN-----------------------------------VP-------------------------- 97 (156)
T ss_dssp TCHHHHHHHHHTTCCSC-----------------------------------CC--------------------------
T ss_pred CcHHHHHHHHHcCCCCC-----------------------------------Cc--------------------------
Confidence 77777777776665411 11
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
|..|.||||+|+..|+.+++++|++. ++ ++.+|.+|+||||+|+..|+.
T Consensus 98 -----------------------------~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~-~~~~~~~g~t~l~~A~~~~~~ 146 (156)
T 1bd8_A 98 -----------------------------DGTGALPIHLAVQEGHTAVVSFLAAE-SD-LHRRDARGLTPLELALQRGAQ 146 (156)
T ss_dssp -----------------------------CTTSCCHHHHHHHHTCHHHHHHHHTT-SC-TTCCCTTSCCHHHHHHHSCCH
T ss_pred -----------------------------CCCCCcHHHHHHHhChHHHHHHHHhc-cC-CCCcCCCCCCHHHHHHHcCcH
Confidence 13445666666666666667777666 55 666677777777777777777
Q ss_pred HHHHHHHhh
Q 044420 286 NIFNLIYEI 294 (545)
Q Consensus 286 ~iv~~Ll~~ 294 (545)
+++++|+++
T Consensus 147 ~~v~~Ll~~ 155 (156)
T 1bd8_A 147 DLVDILQGH 155 (156)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHhh
Confidence 777777653
|
| >3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-28 Score=216.49 Aligned_cols=157 Identities=18% Similarity=0.144 Sum_probs=142.6
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|.||||.||..|+.+++++|++ .+ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 75 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIE--QE-NVIN-HTDEEGFTPLMWAAAHGQIAVVEFLLQ--NGADPQLLGKGRESALSL 75 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHH--HS-SCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHH--cC-CCcC-CCCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCcCCCCCcHHHH
Confidence 58999999999999999999999 55 5555 789999999999999999999999999 799999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+.. + +.+
T Consensus 76 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~-~-~~~ 152 (167)
T 3v31_A 76 ACSKGYTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYR-S-VQQ 152 (167)
T ss_dssp HHHHTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH-H-HHH
T ss_pred HHHcCCHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcH-H-HHH
Confidence 99999999999999999997 89999999999999999999999999999999888899999999999887653 4 445
Q ss_pred HHHhCC
Q 044420 168 LLEDHS 173 (545)
Q Consensus 168 lL~~~~ 173 (545)
+|.+++
T Consensus 153 ~L~~~~ 158 (167)
T 3v31_A 153 VIESHL 158 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=213.25 Aligned_cols=159 Identities=21% Similarity=0.208 Sum_probs=142.1
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
....+.+|||.||+.|+.+++++|++ ++ .+++ ..|..|.||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~ 83 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMA--NG-ADVN-AEDASGWTPLHLAAFNGHLEIVEVLLK--NGADVNAVDHAGMTP 83 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCH
Confidence 34557899999999999999999999 66 6665 788999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+. . .
T Consensus 84 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~-~-~ 160 (169)
T 2y1l_E 84 LRLAALFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGN-E-D 160 (169)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC-H-H
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCC-H-H
Confidence 99999999999999999999997 8999999999999999999999999999999988888899999999887655 2 4
Q ss_pred HHHHHHhC
Q 044420 165 ALKLLEDH 172 (545)
Q Consensus 165 ~~~lL~~~ 172 (545)
+.++|.+.
T Consensus 161 ~~~~L~~~ 168 (169)
T 2y1l_E 161 LAEILQKL 168 (169)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHHc
Confidence 44555544
|
| >3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* | Back alignment and structure |
|---|
Probab=99.95 E-value=8e-28 Score=213.45 Aligned_cols=160 Identities=21% Similarity=0.203 Sum_probs=141.6
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+.+|.||||.|++.|+.+.++.|++ ..+ ... ...+..|.||||+|+..|+.+++++|++ .+++++.+|..|.|||
T Consensus 5 ~~~~~~~l~~A~~~g~~~~v~~ll~-~~~-~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L 79 (165)
T 3twr_A 5 NSEADRQLLEAAKAGDVETVKKLCT-VQS-VNC-RDIEGRQSTPLHFAAGYNRVSVVEYLLQ--HGADVHAKDKGGLVPL 79 (165)
T ss_dssp -CHHHHHHHHHHHHTCHHHHHHHCC-TTT-TTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHH
T ss_pred cchhhHHHHHHHHhCCHHHHHHHHH-cCC-CCc-cccccCCCCHHHHHHHcChHHHHHHHHh--cCCCCCccCCCCCCHH
Confidence 5678999999999999999999999 333 333 3678889999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
|+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+. +.. .+
T Consensus 80 ~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~--~~~-~i 155 (165)
T 3twr_A 80 HNACSYGHYEVAELLVKHGAVV-NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD--GDT-DI 155 (165)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT--TCH-HH
T ss_pred HHHHHcCcHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc--CCh-HH
Confidence 9999999999999999999997 8999999999999999999999999999999999999999999999654 443 55
Q ss_pred HHHHHhCCC
Q 044420 166 LKLLEDHSG 174 (545)
Q Consensus 166 ~~lL~~~~~ 174 (545)
.++|.+.|+
T Consensus 156 ~~~L~~~gA 164 (165)
T 3twr_A 156 QDLLRGDAA 164 (165)
T ss_dssp HHHHHTC--
T ss_pred HHHHhhccc
Confidence 666666654
|
| >1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-27 Score=208.51 Aligned_cols=145 Identities=17% Similarity=0.142 Sum_probs=131.8
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
|..+|||.|++.|+.+++++|++ .+ .+.+ .+..|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 1 d~~~~L~~A~~~g~~~~v~~Ll~--~g-~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 73 (153)
T 1awc_B 1 DLGKKLLEAARAGQDDEVRILMA--NG-APFT--TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHM 73 (153)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH--HT-CCCC--CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHH
T ss_pred CccHHHHHHHHcCCHHHHHHHHH--cC-CCCC--cCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHH
Confidence 35689999999999999999999 44 4443 58899999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+++|+..+.
T Consensus 74 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~ 145 (153)
T 1awc_B 74 AASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred HHHcChHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence 99999999999999999997 8999999999999999999999999999999877777777777777776654
|
| >1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-28 Score=230.25 Aligned_cols=181 Identities=16% Similarity=0.095 Sum_probs=129.5
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
..|.||||.|++.|+.+.++.|++ ++ .+++ .+..|.||||.|+..|+.+++++|++ .+++++.+|..|.||||
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~--~g-~~~~--~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~d~~g~t~L~ 75 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIA--HG-MRVK--FNPLPLALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALH 75 (239)
T ss_dssp ---------------------------------------CHHHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhc--cC-CCcc--cCchhhHHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHH
Confidence 469999999999999999999999 67 6665 45789999999999999999999999 79999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCCh-hhHHHHH-HhcCcHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQ-NALFFTC-ISTDLHDL 164 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-t~l~~aa-~~~~~~~~ 164 (545)
+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..+. ||+|.|. ...++. .
T Consensus 76 ~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~-~ 153 (239)
T 1ycs_B 76 NAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYT-Q 153 (239)
T ss_dssp HHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCC-C
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccH-H
Confidence 999999999999999999997 89999999999999999999999999999999999998887 9999883 233443 4
Q ss_pred HHHHHHhCCCccccc---------CCCCchHHHHHHhCCCC
Q 044420 165 ALKLLEDHSGLAVAR---------DGNYETALHVLARKPSA 196 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~---------d~~g~tpLh~A~~~~~~ 196 (545)
+.++|.+.+++++.. +..+.++++++...|..
T Consensus 154 ~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~ 194 (239)
T 1ycs_B 154 CSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC 194 (239)
T ss_dssp HHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE
T ss_pred HHHHHHHhhhcccccccceEEEEeccCCCCCCcccccCCCE
Confidence 456666667666654 66788888888888853
|
| >1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B | Back alignment and structure |
|---|
Probab=99.94 E-value=6.9e-27 Score=205.31 Aligned_cols=153 Identities=18% Similarity=0.188 Sum_probs=136.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
++.||||.||+.|+.+.++.|++ ..+ .+++ ..|..|+||||+ +..|+.+++++|++ .|++++.+|..|.||||+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~-~~~-~~~~-~~~~~g~t~L~~-~~~~~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~ 74 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLH-REL-VHPD-ALNRFGKTALQV-MMFGSTAIALELLK--QGASPNVQDTSGTSPVHD 74 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHH-TTC-CCTT-CCCTTSCCHHHH-SCTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHH-hhC-cCcc-ccCCCCCcHHHH-HHcCCHHHHHHHHH--CCCCCCCcCCCCCCHHHH
Confidence 36799999999999999999999 333 3444 789999999999 99999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++ ++++..+..|.||+++|+..+. .+.+..
T Consensus 75 A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~-~~~v~~ 151 (156)
T 1bd8_A 75 AARTGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGA-QDLVDI 151 (156)
T ss_dssp HHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCC-HHHHHH
T ss_pred HHHcCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCc-HHHHHH
Confidence 99999999999999999997 89999999999999999999999999999 8878888888888888887654 344444
Q ss_pred HH
Q 044420 168 LL 169 (545)
Q Consensus 168 lL 169 (545)
++
T Consensus 152 Ll 153 (156)
T 1bd8_A 152 LQ 153 (156)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-26 Score=197.26 Aligned_cols=128 Identities=17% Similarity=0.118 Sum_probs=118.5
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCC-CCc
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRN-GNT 83 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~-g~T 83 (545)
.+.+|.||||.|++.|+.+++++|++ .+ .+++ .+|..|+||||+|+. |+.+++++|++ .+++++.+|.. |.|
T Consensus 8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~--~g~~~~~~~~~~g~t 80 (136)
T 1d9s_A 8 LGGSSDAGLATAAARGQVETVRQLLE--AG-ADPN-ALNRFGRRPIQVMMM-GSAQVAELLLL--HGAEPNCADPATLTR 80 (136)
T ss_dssp CCCCCSCHHHHHHHTTCHHHHHHHHH--TT-CCTT-CCCTTCCTTTTTSTT-SCHHHHHHHHH--HTCCSSCCBTTTTBC
T ss_pred CCCCCccHHHHHHHcCCHHHHHHHHH--cC-CCcC-CcCCCCCCHHHHHHc-CCHHHHHHHHH--CCCCCCCcCCCCCCC
Confidence 45679999999999999999999999 56 6665 778999999999999 99999999999 79999999999 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999997 89999999999999999999999999999874
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=208.14 Aligned_cols=161 Identities=9% Similarity=-0.009 Sum_probs=120.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcHHHHHHHhCCH----HHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTAFCFAVAAGSI----HIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~----~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
+.++||.|++.|+.+.++.+++ .+ ++.++ ..|+||||+|+.+|+. +++++|+++|+++ +.+|.+|+||||
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~--~~--~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadv-n~~d~~g~TpLh 80 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFE--KG--YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADI-KSRTKEGTTLFF 80 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHH--HS--SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCS-SCCCTTCCCTHH
T ss_pred cccHHHHHHHcCCHHHHHHHHh--cC--cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCC-CCCCCCCCcHHH
Confidence 4567777888888777777776 22 34445 6677888888877764 4778888888876 777777888888
Q ss_pred HHHHcCC------HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCc-hHHHHHHhC
Q 044420 121 MAAVLAQ------RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYE-TALHVLARK 193 (545)
Q Consensus 121 ~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~-tpLh~A~~~ 193 (545)
+|+..|+ .+++++|+++|+ +++.+|.+|. ||||+|+..
T Consensus 81 ~a~~~~~~~~~~~~~iv~~Ll~~Ga-----------------------------------din~~d~~g~ttpLh~A~~~ 125 (186)
T 3t8k_A 81 PLFQGGGNDITGTTELCKIFLEKGA-----------------------------------DITALYKPYKIVVFKNIFNY 125 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTC-----------------------------------CSSSCBGGGTBCTTGGGGGC
T ss_pred HHHHcCCcchhhHHHHHHHHHHCCC-----------------------------------CCCccCCCcCchHHHHHHHc
Confidence 8877776 355666665555 4667788888 888888875
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHH-HCCCcccccccCC
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC-SYPDLVHELDDNN 272 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~-~~~~~~~~~d~~G 272 (545)
+.. ..++.+++++|++ +|++ ++.+|..|
T Consensus 126 ~~~--------------------------------------------------~~~~~~iv~~Ll~~~gad-~~~~d~~G 154 (186)
T 3t8k_A 126 FVD--------------------------------------------------ENEMIPLYKLIFSQSGLQ-LLIKDKWG 154 (186)
T ss_dssp CSC--------------------------------------------------HHHHHHHHHHHHTSTTCC-TTCCCTTS
T ss_pred CCC--------------------------------------------------hhhHHHHHHHHHHhcCCC-CcccCCCC
Confidence 421 0134678899999 8999 89999999
Q ss_pred CcHHHHHHHhCchHHHHHHHhhccc
Q 044420 273 RSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 273 ~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
+||||+|++.++.+++++|.+....
T Consensus 155 ~TpL~~A~~~~~~~~v~~L~~~~~~ 179 (186)
T 3t8k_A 155 LTALEFVKRCQKPIALKMMEDYIKK 179 (186)
T ss_dssp CCHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999999999999999987655
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=202.76 Aligned_cols=141 Identities=18% Similarity=0.112 Sum_probs=111.6
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc-
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT- 83 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T- 83 (545)
....|.||||+||+.|+.+++++|++ .+ .+++ ..|..|+||||+|+ .|+.+++++|++ .|++++.+|..|.|
T Consensus 8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~-~~~~~~v~~Ll~--~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 8 SMEPSADWLATAAARGRVEEVRALLE--AG-ANPN-APNSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTR 80 (156)
T ss_dssp --CCSTTHHHHHHHHTCHHHHHHHHT--TT-CCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCC
T ss_pred CCccchHHHHHHHHcCCHHHHHHHHH--cC-CCCC-CCCCCCCCHHHHHH-cCCHHHHHHHHH--cCCCCCCcCCCCCcH
Confidence 45668999999999999999999998 56 6665 67889999999985 899999999998 78999999999998
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALF 153 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~ 153 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.+|..
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~ 149 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence 999999999999999999999997 889999999999999999999999999999886666666666544
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.93 E-value=8.7e-26 Score=193.42 Aligned_cols=129 Identities=22% Similarity=0.173 Sum_probs=117.6
Q ss_pred CcccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCC
Q 044420 3 RNVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 3 ~~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
......+.||||+||+.|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.
T Consensus 8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~ 81 (136)
T 2jab_A 8 HHHGSDLGKKLLEAARAGQDDEVRILMA--NG-ADVN-AKDEYGLTPLYLATAHGHLEIVEVLLK--NGADVNAVDAIGF 81 (136)
T ss_dssp ----CHHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCC
T ss_pred CcccccccHHHHHHHHhCCHHHHHHHHH--cC-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCC
Confidence 3456678999999999999999999999 56 6665 788999999999999999999999999 7999999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 044420 83 TAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138 (545)
Q Consensus 83 TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 138 (545)
||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|
T Consensus 82 t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 82 TPLHLAAFIGHLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 9999999999999999999999997 899999999999999999999999999876
|
| >1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.1e-26 Score=193.96 Aligned_cols=134 Identities=13% Similarity=0.106 Sum_probs=91.9
Q ss_pred CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChh
Q 044420 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQN 150 (545)
Q Consensus 71 ~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t 150 (545)
+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+. |+.+++++|+++|++++.
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~------- 72 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADP-NALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNC------- 72 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSC-------
T ss_pred CCCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCC-------
Confidence 3566667777777777777777777777777777765 6667777777777777 777777777776654211
Q ss_pred hHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchh
Q 044420 151 ALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSE 230 (545)
Q Consensus 151 ~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 230 (545)
T Consensus 73 -------------------------------------------------------------------------------- 72 (136)
T 1d9s_A 73 -------------------------------------------------------------------------------- 72 (136)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhhhccC-CChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 231 FTDLIRK-PSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 231 ~~~~~~~-g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
.|.. |.||||+|+..|+.+++++|+++|++ ++.+|..|+||||+|+.+++.+++++|+++|+|
T Consensus 73 ---~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 73 ---ADPATLTRPVHDAAREGFLDTLVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp ---CBTTTTBCHHHHHHHHTCHHHHHHHHHTCCC-CCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred ---cCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 1133 56666666666677777777777777 677777777777777777777777777777654
|
| >3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=209.34 Aligned_cols=161 Identities=16% Similarity=0.077 Sum_probs=134.8
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCH----HHHHHHHHcCCCcccccccCCCC
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQT----GFVEELLKLMKPEDLTLQDRNGN 82 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~d~~g~ 82 (545)
..++++||.||+.|+.+.++.+++ . ..+...+..|+||||+|+..|+. +++++|++ +|+++|.+|..|+
T Consensus 4 ~~~~~~l~~Aa~~g~~~~~~~l~~-~----~~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~--~Gadvn~~d~~g~ 76 (186)
T 3t8k_A 4 MSEYRTVSAAAMLGTYEDFLELFE-K----GYEDKESVLKSNILYDVLRNNNDEARYKISMFLIN--KGADIKSRTKEGT 76 (186)
T ss_dssp HHHCSSHHHHHHHSCHHHHHHHHH-H----SSSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHH--TTCCSSCCCTTCC
T ss_pred cccccHHHHHHHcCCHHHHHHHHh-c----CcccccccCCCCHHHHHHHcCCcchHHHHHHHHHH--CCCCCCCCCCCCC
Confidence 457899999999999999999998 2 22322236799999999999985 59999999 8999999999999
Q ss_pred cHHHHHHHhCC------HHHHHHHHHcCcccccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-cccCCccCCCCCh
Q 044420 83 TAFCFAVAAGS------IHIAKIMLKKNERLLTMRGGENM-TPLYMAAVLA-----QRDMALYLYD-DAKAKDNLTPEDQ 149 (545)
Q Consensus 83 TpLh~A~~~g~------~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~~~g-----~~~iv~~Ll~-~~~~~~~~~~~~~ 149 (545)
||||+|+..|+ .+++++|+++|+++ +.+|..|. ||||+|+..+ +.+++++|++ +|++++..+..|.
T Consensus 77 TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadi-n~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~ 155 (186)
T 3t8k_A 77 TLFFPLFQGGGNDITGTTELCKIFLEKGADI-TALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGL 155 (186)
T ss_dssp CTHHHHHHHCTTCHHHHHHHHHHHHHTTCCS-SSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSC
T ss_pred cHHHHHHHcCCcchhhHHHHHHHHHHCCCCC-CccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCC
Confidence 99999999987 68999999999998 99999999 9999999944 4568999999 9999888888888
Q ss_pred hhHHHHHHhcCcHHHHHHHHHhCCCccc
Q 044420 150 NALFFTCISTDLHDLALKLLEDHSGLAV 177 (545)
Q Consensus 150 t~l~~aa~~~~~~~~~~~lL~~~~~~~~ 177 (545)
||||+|+..+. ..+.++|.++....+
T Consensus 156 TpL~~A~~~~~--~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 156 TALEFVKRCQK--PIALKMMEDYIKKYN 181 (186)
T ss_dssp CHHHHHHTTTC--HHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCC--HHHHHHHHHHHHHHh
Confidence 99988887655 345566665443333
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-25 Score=186.33 Aligned_cols=126 Identities=27% Similarity=0.338 Sum_probs=119.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|+||||.|++.|+.+++++|++ ++ .+++ ..+..|.||||+|+..|+.+++++|++ .+++++.+|..|.||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~l~~ 74 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AG-ADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHL 74 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HT-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cC-CCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCcHHHH
Confidence 58999999999999999999999 55 5555 678999999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.+++++|+++|+++ +.+|..|.||||+|+..|+.+++++|+++|+|
T Consensus 75 A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 75 AARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp HHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred HHHcChHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 99999999999999999997 89999999999999999999999999999974
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-26 Score=216.00 Aligned_cols=122 Identities=21% Similarity=0.207 Sum_probs=104.4
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.+.+++..++..|+.+.++.+.. .+ . ..+.+|.||||+|++.|+.++++.|++ +++++.+|..|.||||+
T Consensus 14 ~~~~~~l~~~~~g~~~~~~~~~~--~~-~----~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~~ 83 (244)
T 3ui2_A 14 EGAMEYLIEWKDGHSPSWVPSSY--IA-A----DVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALLF 83 (244)
T ss_dssp TTEEEEEEEESSCCCCEEEEGGG--SC-H----HHHHHHHHHHHHHHTTTCHHHHHHTTT---TCCTTCBCTTSCBHHHH
T ss_pred CCccHHHHHHHcCCCcccccccc--cc-c----ccccCCCCHHHHHHHcCCHHHHHHHHc---CCCCCCcCCCCCCHHHH
Confidence 45566666677777666655554 33 2 234679999999999999999999997 78999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+..|+.++|++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++|++
T Consensus 84 A~~~g~~~~v~~Ll~~ga~~-~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 136 (244)
T 3ui2_A 84 VAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD 136 (244)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred HHHCCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence 99999999999999999997 6676 8899999999999999999999999876
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-26 Score=205.51 Aligned_cols=167 Identities=20% Similarity=0.181 Sum_probs=135.1
Q ss_pred HHHHcCChHHHHHhhcCCCCchh--------hhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 15 KAALKGNWPTAKHLLGNEDPRSI--------LCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 15 ~Aa~~g~~~~v~~Ll~~~~~~~~--------~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.|++.|..+.+++|++...+ .. .....+.+|+||||+|++.|+.++++.|++ +++++.+|..|.||||
T Consensus 6 ~aa~~~~~~~~~~li~~~~~-~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~---~~~~~~~d~~g~t~L~ 81 (183)
T 3deo_A 6 IGSRTAGEGAMEYLIEWKDG-HSPSWVPSSYIAADVVSEYETPWWTAARKADEQALSQLLE---DRDVDAVDENGRTALL 81 (183)
T ss_dssp EEEEEETTTEEEEEEEETTC-CCCEEEEGGGSCHHHHHHHHHHHHHHHHTTCHHHHHHHTT---TSCTTCCCTTSCCHHH
T ss_pred HHHHhcCCchhHHHHHHhCC-CCccccchhcccccCCCCCCCHHHHHHHcCCHHHHHHHHh---cCCCCCcCCCCCCHHH
Confidence 35566777777777752121 11 011235689999999999999999999997 7899999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCC-CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRG-GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~ 165 (545)
+|+..|+.+++++|+++|+++ +.++ ..|.||||+|+..|+.+++++|+++|++
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------------------- 135 (183)
T 3deo_A 82 FVAGLGSDKCVRLLAEAGADL-DHRDMRGGLTALHMAAGYVRPEVVEALVELGAD------------------------- 135 (183)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCC-------------------------
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCC-------------------------
Confidence 999999999999999999997 6677 8999999999999999999999999876
Q ss_pred HHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHH
Q 044420 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDA 245 (545)
Q Consensus 166 ~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A 245 (545)
++.+|.+|.||||+|++.++. ..+.+||++|
T Consensus 136 ----------~~~~d~~g~tpl~~A~~~~~~---------------------------------------~~~~~~l~~a 166 (183)
T 3deo_A 136 ----------IEVEDERGLTALELAREILKT---------------------------------------TPKGNPMQFG 166 (183)
T ss_dssp ----------TTCCCTTSCCHHHHHHHHHHT---------------------------------------CCCCSHHHHH
T ss_pred ----------CcCCCCCCCCHHHHHHHhccC---------------------------------------cccccHHHHH
Confidence 346677777777777765422 3457888888
Q ss_pred HhcCcHHHHHHHHHH
Q 044420 246 AELGNFEFLAELICS 260 (545)
Q Consensus 246 ~~~g~~~~v~~Ll~~ 260 (545)
+..|+.++++.|.++
T Consensus 167 ~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 167 RRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHTC
T ss_pred HHcCHHHHHHHHHHh
Confidence 888888888888754
|
| >1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.5e-25 Score=192.33 Aligned_cols=145 Identities=14% Similarity=0.057 Sum_probs=117.5
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCc-HH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT-PL 119 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pL 119 (545)
..+..|.||||+|++.|+.+++++|++ .|++++.+|..|.||||+|+ .|+.+++++|+++|+++ +.+|..|.| ||
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL 82 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPV 82 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHH
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHH--cCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHH
Confidence 457889999999999999999999999 79999999999999999985 99999999999999997 899999999 99
Q ss_pred HHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHH
Q 044420 120 YMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLA 191 (545)
Q Consensus 120 ~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~ 191 (545)
|+|+..|+.+++++|+++|++++..+..|.||||+|+..+. ..+.++|.++|++++.+|..|.||.+.+.
T Consensus 83 ~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~--~~~v~~Ll~~ga~~~~~~~~g~t~~~~~~ 152 (156)
T 1bi7_B 83 HDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH--RDVARYLRAAAGGTRGSNHARIDAAEGPS 152 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC--HHHHHHHSSCC------------------
T ss_pred HHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCH--HHHHHHHHHcCCCCCccCcCcCcccccCC
Confidence 99999999999999999999999999999999999998865 36778888999999999999999987543
|
| >1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-23 Score=175.42 Aligned_cols=93 Identities=26% Similarity=0.382 Sum_probs=89.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
+|+||||+|++.|+.+++++|++ .+.+++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHH--cCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCcHHHHHHH
Confidence 58999999999999999999999 79999999999999999999999999999999999997 8899999999999999
Q ss_pred cCCHHHHHHHHHcccC
Q 044420 125 LAQRDMALYLYDDAKA 140 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~ 140 (545)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~ 93 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGAD 93 (126)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cChHHHHHHHHHcCCC
Confidence 9999999999998876
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-24 Score=186.40 Aligned_cols=128 Identities=18% Similarity=0.117 Sum_probs=84.9
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|+||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t 78 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ--NG-SDPN-VKDHAGWTPLHEACNHGHLKVVELLLQ--HKALVNTTGYQNDS 78 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH--TT-CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCGGGCC
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-cCCCCCCCHHHHHHHcCCHHHHHHHHH--cCCcccCcCCCCCC
Confidence 345566777777777777777777776 44 4444 556667777777777777777777776 56777777777777
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcc
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDA 138 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~ 138 (545)
|||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..+..+++++|.+.+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~ 132 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLLLLPEKNE 132 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence 777777777777777777777765 666777777777777666666666655544
|
| >2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-23 Score=176.10 Aligned_cols=127 Identities=21% Similarity=0.240 Sum_probs=113.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.....|.||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 9 ~~~~~~~t~l~~A~~~g~~~~v~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~t~L~ 85 (136)
T 2jab_A 9 HHGSDLGKKLLEAARAGQDDEVRILMA--NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADV-NAVDAIGFTPLH 85 (136)
T ss_dssp ---CHHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHH
T ss_pred cccccccHHHHHHHHhCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHH
Confidence 345678999999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhC
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDH 172 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~ 172 (545)
+|+..|+.+++++|+++|++++..+..|.||+++|+..+.. + +.++|.++
T Consensus 86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~-~-~~~~Ll~~ 135 (136)
T 2jab_A 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNE-D-LAEILQKL 135 (136)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH-H-HHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCH-H-HHHHHHHc
Confidence 99999999999999999999888888999999998877653 4 44555544
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.6e-23 Score=175.85 Aligned_cols=109 Identities=23% Similarity=0.242 Sum_probs=73.5
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
.|.||||.|+..|+.++++.|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~--~~-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVA--KG-EDVN-RTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLS 79 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHH--TT-CCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHT--TTCCTTCCCTTSCCHHHH
T ss_pred ccchHHHHHHHcCCHHHHHHHHH--cC-CCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHH
Confidence 45667777777777777777776 44 4443 556667777777777777777777776 566777777777777777
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
|+..|+.+++++|+++|+++ +.+|.+|.||||+|.
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~ 114 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATD 114 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCC
T ss_pred HHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhC
Confidence 77777777777777777665 666677777777664
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-23 Score=196.07 Aligned_cols=131 Identities=24% Similarity=0.236 Sum_probs=104.9
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+.+|.||||.||..|+.++++.|++ .+ .+++ .+|..|+||||+||..|+.++|++|++. .|++++.+|..|+|||
T Consensus 70 ~~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~g~~~~~~d~~g~tpL 144 (222)
T 3ehr_A 70 AESIDNPLHEAAKRGNLSWLRECLD--NR-VGVN-GLDKAGSTALYWACHGGHKDIVEMLFTQ-PNIELNQQNKLGDTAL 144 (222)
T ss_dssp EEEESCHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHTTS-TTCCCCCCCTTSCCHH
T ss_pred ccccccccccccccCcHHHHHHHHh--CC-CCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHcC-CCCCccccCCCCCCHH
Confidence 3467889999999999999999998 55 5555 6788899999999999999999999983 3888999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCc
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKD 142 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~ 142 (545)
|+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.++++.|++.+++..
T Consensus 145 ~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~ 200 (222)
T 3ehr_A 145 HAAAWKGYADIVQLLLAKGART-DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT 200 (222)
T ss_dssp HHHHHHTCHHHHHHHHHHTCCS-CCCCTTSCCHHHHCCSHHHHHHHC----------
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-ccccCCCCCHHHHhcchhHHHHHHHHhccchhhh
Confidence 9999999999999999999987 8889999999999999999999999988887643
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4e-23 Score=201.33 Aligned_cols=125 Identities=17% Similarity=0.139 Sum_probs=95.9
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhc-----cCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCC
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAG-----IAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTLQDRNG 81 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~-----~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g 81 (545)
.++||.|+..|+.+.++.|++ .+ .+++.. .+..|+||||+|+.. |+.+++++|++ .|++++.+|..|
T Consensus 152 ~~~L~~A~~~g~~~~v~~ll~--~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadvn~~d~~G 226 (301)
T 2b0o_E 152 PQRLWTAICNRDLLSVLEAFA--NG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHLDAKAADG 226 (301)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHH--HSSCTTCCCTTC
T ss_pred HHHHhhhhhccCHHHHHHHHh--cC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHh--cCCCCCCCCCCC
Confidence 456888888888888888877 44 444421 467788888888876 77888888887 677888888888
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 227 ~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~ 284 (301)
T 2b0o_E 227 NTALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG 284 (301)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC
Confidence 88888888888888888888888886 77788888888888888888888888877763
|
| >3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-23 Score=176.87 Aligned_cols=115 Identities=23% Similarity=0.230 Sum_probs=108.4
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.+|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQ--NGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCCHHH
Confidence 578999999999999999999999999 89999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHh
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIS 158 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~ 158 (545)
+|+..|+.+++++|+++|++++..+..|.||+++|+..
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~ 119 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDE 119 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhc
Confidence 99999999999999999999888888888888887654
|
| >2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-22 Score=195.52 Aligned_cols=77 Identities=16% Similarity=0.053 Sum_probs=63.4
Q ss_pred ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 235 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
|.+|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|+++|++ .|+||||
T Consensus 223 d~~G~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~----------~g~tpLh 291 (301)
T 2b0o_E 223 AADGNTALHYAALYNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKKHHKECEELLEQAQAG----------TFAFPLH 291 (301)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH----------TTSSCCC
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC----------CCCChhH
Confidence 36678888888889999999999999999 999999999999999999999999999998865 4899999
Q ss_pred hhccCCCC
Q 044420 315 LAAKSPHP 322 (545)
Q Consensus 315 ~A~~~~~~ 322 (545)
+|+..|+.
T Consensus 292 ~A~~~g~~ 299 (301)
T 2b0o_E 292 VDYSWVIS 299 (301)
T ss_dssp --------
T ss_pred HHHhcCCc
Confidence 99998864
|
| >3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=168.55 Aligned_cols=111 Identities=18% Similarity=0.225 Sum_probs=102.1
Q ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHH
Q 044420 42 IAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYM 121 (545)
Q Consensus 42 ~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~ 121 (545)
.+..|.||||+|+..|+.+++++|++ .+.+++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||+
T Consensus 3 ~~~~~~~~l~~A~~~~~~~~v~~ll~--~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 3 LGSMCDKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLS 79 (123)
T ss_dssp ----CHHHHHHHHHTTCHHHHHHHHH--TTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTSCCHHHH
T ss_pred cccccchHHHHHHHcCCHHHHHHHHH--cCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHH
Confidence 35678999999999999999999999 79999999999999999999999999999999999997 8999999999999
Q ss_pred HHHcCCHHHHHHHHHcccCCccCCCCChhhHHHH
Q 044420 122 AAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFT 155 (545)
Q Consensus 122 A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~a 155 (545)
|+..|+.+++++|+++|++++..+..|.||+++|
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHC
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHh
Confidence 9999999999999999998877788888888877
|
| >3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-22 Score=182.54 Aligned_cols=139 Identities=19% Similarity=0.192 Sum_probs=119.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+.+|.||||.||+.|+.++++.|++ + .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+| ..|+||
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~-~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~~~~~g~tp 113 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE---D-RDVD-AVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTA 113 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT---T-SCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSSCCH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh---c-CCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCcCCCCCCCCH
Confidence 4578999999999999999999998 2 4444 688999999999999999999999999 899999998 889999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|++.++. ..+.+++++++..+. ..
T Consensus 114 L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~-----------------~~~~~~l~~a~~~~~--~~ 173 (183)
T 3deo_A 114 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILKT-----------------TPKGNPMQFGRRIGL--EK 173 (183)
T ss_dssp HHHHHHTTCHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHHHHT-----------------CCCCSHHHHHHHHHH--HH
T ss_pred HHHHHhcCcHHHHHHHHHcCCCC-cCCCCCCCCHHHHHHHhccC-----------------cccccHHHHHHHcCH--HH
Confidence 99999999999999999999997 89999999999999975433 344677777776643 34
Q ss_pred HHHHHHh
Q 044420 165 ALKLLED 171 (545)
Q Consensus 165 ~~~lL~~ 171 (545)
+.++|.+
T Consensus 174 i~~~L~~ 180 (183)
T 3deo_A 174 VINVLEG 180 (183)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 5555554
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-22 Score=157.57 Aligned_cols=93 Identities=26% Similarity=0.375 Sum_probs=86.0
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAV 124 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~ 124 (545)
+|+||||+|+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV-NAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHH
Confidence 48999999999999999999999 79999999999999999999999999999999999997 8899999999999999
Q ss_pred cCCHHHHHHHHHcccC
Q 044420 125 LAQRDMALYLYDDAKA 140 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~ 140 (545)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999874
|
| >3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A | Back alignment and structure |
|---|
Probab=99.86 E-value=3.5e-22 Score=188.97 Aligned_cols=140 Identities=20% Similarity=0.187 Sum_probs=120.8
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTA 84 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~Tp 84 (545)
+.+|.||||.||+.|+.++++.|++ + .+++ .+|..|+||||+||..|+.++|++|++ +|++++.+| ..|.||
T Consensus 42 ~~~g~t~L~~A~~~g~~~~v~~Ll~---~-~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~--~ga~~~~~~~~~g~t~ 114 (244)
T 3ui2_A 42 VSEYETPWWTAARKADEQALSQLLE---D-RDVD-AVDENGRTALLFVAGLGSDKCVRLLAE--AGADLDHRDMRGGLTA 114 (244)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHTTT---T-CCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHH--TTCCTTCCCSSSCCCH
T ss_pred ccCCCCHHHHHHHcCCHHHHHHHHc---C-CCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCcCCCCCCCCH
Confidence 3478999999999999999999998 2 4444 688999999999999999999999999 899999998 889999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
||+|+..|+.+++++|+++|+++ +.+|..|.||||+|+..++ ...+.+|+++++..+.. .
T Consensus 115 L~~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~t~l~~A~~~~~-----------------~~~~~~~l~~a~~~g~~--~ 174 (244)
T 3ui2_A 115 LHMAAGYVRPEVVEALVELGADI-EVEDERGLTALELAREILK-----------------TTPKGNPMQFGRRIGLE--K 174 (244)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHHT-----------------TCCCSSHHHHHHHHHHH--H
T ss_pred HHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCcHHHHHHHHHh-----------------ccCCCCHHHHHHHcChH--H
Confidence 99999999999999999999997 8999999999999986322 24567899998877643 4
Q ss_pred HHHHHHhC
Q 044420 165 ALKLLEDH 172 (545)
Q Consensus 165 ~~~lL~~~ 172 (545)
+.++|.+.
T Consensus 175 iv~~L~~~ 182 (244)
T 3ui2_A 175 VINVLEGQ 182 (244)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555554
|
| >3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.8e-22 Score=186.82 Aligned_cols=170 Identities=19% Similarity=0.171 Sum_probs=129.3
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCC-------------CchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNED-------------PRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPED 73 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~-------------~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~ 73 (545)
.+++++.+.+.+.|+...+..+.+ .. + .......+.+|.||||+||..|+.+++++|++ .|++
T Consensus 23 ~~~~~~~el~~~~Gd~~~v~~~~~-~~w~~~~~~g~~gl~p-~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~ 98 (222)
T 3ehr_A 23 FEPRTPDELYIEEGDIIYITDMSD-TNWWKGTSKGRTGLIP-SNYVAEQAESIDNPLHEAAKRGNLSWLRECLD--NRVG 98 (222)
T ss_dssp CCCSSTTBCCCCTTCEEEEEECCS-SSEEEEEETTEEEEEE-HHHHHHHEEEESCHHHHHHHHTCHHHHHHHHH--TTCC
T ss_pred cCCCCCCcccccCCCEEEEecccc-chhHhcccCCcceeec-hhhccccccccccccccccccCcHHHHHHHHh--CCCC
Confidence 455666777777777655544433 10 1 12223457789999999999999999999999 8999
Q ss_pred cccccCCCCcHHHHHHHhCCHHHHHHHHHc-CcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 74 LTLQDRNGNTAFCFAVAAGSIHIAKIMLKK-NERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 74 ~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
++.+|..|.||||+|+..|+.++|++|++. |+++ +.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+
T Consensus 99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l 177 (222)
T 3ehr_A 99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL-NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAF 177 (222)
T ss_dssp TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCC-CCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHH
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHH
Confidence 999999999999999999999999999999 9997 89999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCC
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNY 183 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g 183 (545)
++|+..+. ..+.+.+...++..+.++.+|
T Consensus 178 ~~A~~~~~--~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 178 DMATNAAC--ASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHCCSHHH--HHHHC----------------
T ss_pred HHhcchhH--HHHHHHHhccchhhhccchhh
Confidence 99987543 345566666676666555444
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=187.98 Aligned_cols=126 Identities=21% Similarity=0.198 Sum_probs=115.6
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhh-----hccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCC
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILC-----AGIAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTLQDRN 80 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~ 80 (545)
..++|+.|+..|+.+.++.+++ .+ .+++ +..+..|+||||+|+.. |+.+++++|++ +|+++|.+|..
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~--~g-~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~--~ga~in~~d~~ 204 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYA--DG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGK 204 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHH--TT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTT
T ss_pred hhhhhhhHhhhcccHHHHHHHH--hh-cchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHH--CCCCccccCCC
Confidence 4578999999999999999998 45 4432 23478899999999999 89999999999 79999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+||||+|+..|+.++|++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++
T Consensus 205 g~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 205 GSTALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 999999999999999999999999997 89999999999999999999999999999985
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-21 Score=194.06 Aligned_cols=126 Identities=22% Similarity=0.191 Sum_probs=115.9
Q ss_pred cCCHHhHHHHHc-CChHHHHHhhcCCCCchhhhhccC--CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 8 NICVPLQKAALK-GNWPTAKHLLGNEDPRSILCAGIA--KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 8 ~~~t~L~~Aa~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.|+||.|+.. |+.++++.|++ ++ .+++ ..+ ..|.||||+|+..|+.+++++|++ +|++++.+|..|+||
T Consensus 198 ~~~t~L~~Aa~~~g~~~~v~~LL~--~G-advn-~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~--~Gadvn~~d~~G~Tp 271 (368)
T 3jue_A 198 HPGALLFRASGHPPSLPTMADALA--HG-ADVN-WVNGGQDNATPLIQATAANSLLACEFLLQ--NGANVNQADSAGRGP 271 (368)
T ss_dssp CHHHHHHHHTSSSCCHHHHHHHHH--TT-CCTT-CCCTTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCH
T ss_pred CCCcHHHHHHHccCCHHHHHHHHH--cC-CCCC-ccccccCCCCHHHHHHHCCCHHHHHHHHH--cCCCCCCCCCCCCCH
Confidence 456899999999 99999999999 66 6666 556 889999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
||+|+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|++.+..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-
T ss_pred HHHHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC
Confidence 99999999999999999999997 89999999999999999999999999988753
|
| >1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=183.64 Aligned_cols=137 Identities=16% Similarity=0.084 Sum_probs=113.4
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccc-----cCCCCCCCcHHHHHHHc---CCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLL-----TMRGGENMTPLYMAAVL---AQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~-----~~~~~~g~tpL~~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
..++|+.|+..|+.+.++.+++.|+++. +..|..|.||||+|+.. |+.+++++|+++|++++
T Consensus 130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in---------- 199 (278)
T 1dcq_A 130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLD---------- 199 (278)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTT----------
T ss_pred hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcc----------
Confidence 4578888999999988888888888742 34578888999999888 88888888888887521
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhh
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFT 232 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 232 (545)
.
T Consensus 200 -------------------------~------------------------------------------------------ 200 (278)
T 1dcq_A 200 -------------------------K------------------------------------------------------ 200 (278)
T ss_dssp -------------------------C------------------------------------------------------
T ss_pred -------------------------c------------------------------------------------------
Confidence 1
Q ss_pred hhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCCh
Q 044420 233 DLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNM 312 (545)
Q Consensus 233 ~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~Tp 312 (545)
.|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..|+.+++++|+++|++ .++
T Consensus 201 -~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~------------~~~ 266 (278)
T 1dcq_A 201 -QTGKGSTALHYCCLTDNAECLKLLLRGKAS-IEIANESGETPLDIAKRLKHEHCEELLTQALSG------------RFN 266 (278)
T ss_dssp -CCTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT------------CCC
T ss_pred -cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC------------CCC
Confidence 235678888888888999999999999999 999999999999999999999999999998874 467
Q ss_pred hhhhccCC
Q 044420 313 LHLAAKSP 320 (545)
Q Consensus 313 Lh~A~~~~ 320 (545)
+|.++.+.
T Consensus 267 ~~~~v~~~ 274 (278)
T 1dcq_A 267 SHVHVEYE 274 (278)
T ss_dssp SSCCCCCC
T ss_pred cceeeecc
Confidence 77776653
|
| >1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 | Back alignment and structure |
|---|
Probab=99.84 E-value=7.8e-21 Score=150.79 Aligned_cols=93 Identities=30% Similarity=0.368 Sum_probs=86.7
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCF 87 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~ 87 (545)
+|+||||+|+..|+.+++++|++ .+ .+++ .+|..|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~--~g-~~~n-~~d~~g~t~L~~A~~~~~~~~v~~Ll~--~ga~~~~~d~~g~t~l~~ 74 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLE--AG-ADVN-AKDKNGRTPLHLAARNGHLEVVKLLLE--AGADVNAKDKNGRTPLHL 74 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHH
T ss_pred CCCcHHHHHHHcCCHHHHHHHHH--cC-CCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHH
Confidence 58999999999999999999999 66 6666 789999999999999999999999999 899999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCcc
Q 044420 88 AVAAGSIHIAKIMLKKNER 106 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~ 106 (545)
|+..|+.+++++|+++|++
T Consensus 75 A~~~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 75 AARNGHLEVVKLLLEAGAY 93 (93)
T ss_dssp HHHTTCHHHHHHHHHTTCC
T ss_pred HHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999974
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.8e-21 Score=160.00 Aligned_cols=108 Identities=23% Similarity=0.262 Sum_probs=93.7
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
.+|.+|+||||+|+..|+.+++++|++ .+++++.+|..|.||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLS--KGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTT--TTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHH
Confidence 467889999999999999999999998 78899999999999999999999999999999999987 788899999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhh
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNA 151 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~ 151 (545)
+|+..|+.+++++|+++|++++..+..+.+|
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 9999999999999999998876666666554
|
| >3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2.5e-20 Score=185.75 Aligned_cols=150 Identities=15% Similarity=0.116 Sum_probs=110.7
Q ss_pred cCCCCcHHHHHHHh-CCHHHHHHHHHcCcccccCCC--CCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHH
Q 044420 78 DRNGNTAFCFAVAA-GSIHIAKIMLKKNERLLTMRG--GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFF 154 (545)
Q Consensus 78 d~~g~TpLh~A~~~-g~~~iv~~Ll~~~~~~~~~~~--~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~ 154 (545)
+..+.||||.|+.. |+.++++.|+++|+++ +..+ ..|.||||+|+..|+.+++++|+++|++++
T Consensus 196 ~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn------------ 262 (368)
T 3jue_A 196 SLHPGALLFRASGHPPSLPTMADALAHGADV-NWVNGGQDNATPLIQATAANSLLACEFLLQNGANVN------------ 262 (368)
T ss_dssp -CCHHHHHHHHTSSSCCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT------------
T ss_pred cCCCCcHHHHHHHccCCHHHHHHHHHcCCCC-CccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCC------------
Confidence 34566899999999 9999999999999997 7777 889999999999999999999999887522
Q ss_pred HHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhh
Q 044420 155 TCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDL 234 (545)
Q Consensus 155 aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 234 (545)
. .
T Consensus 263 -----------------------~-------------------------------------------------------~ 264 (368)
T 3jue_A 263 -----------------------Q-------------------------------------------------------A 264 (368)
T ss_dssp -----------------------C-------------------------------------------------------C
T ss_pred -----------------------C-------------------------------------------------------C
Confidence 1 2
Q ss_pred ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhh
Q 044420 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLH 314 (545)
Q Consensus 235 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh 314 (545)
|..|.||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|+..++.+++++|++.+.... .....+..+.|+++
T Consensus 265 d~~G~TpLh~A~~~g~~~~v~~LL~~Gad-~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~-~~~~~~~~~~t~l~ 342 (368)
T 3jue_A 265 DSAGRGPLHHATILGHTGLACLFLKRGAD-LGARDSEGRDPLTIAMETANADIVTLLRLAKMREA-EAAQGQAGDETYLD 342 (368)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC------------------
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcc-cccccCCCCCCHHH
Confidence 25568888888888999999999999999 89999999999999999999999999998875432 14456778889998
Q ss_pred hhccCC
Q 044420 315 LAAKSP 320 (545)
Q Consensus 315 ~A~~~~ 320 (545)
++....
T Consensus 343 i~~~~~ 348 (368)
T 3jue_A 343 IFRDFS 348 (368)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 887653
|
| >3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.5e-20 Score=191.32 Aligned_cols=91 Identities=19% Similarity=0.189 Sum_probs=63.8
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccc------cCCCCcHHHHHHH---hCCHHHHHHHHHcCcccccCCCCCCCc
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQ------DRNGNTAFCFAVA---AGSIHIAKIMLKKNERLLTMRGGENMT 117 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~---~g~~~iv~~Ll~~~~~~~~~~~~~g~t 117 (545)
.+.||.|+..|+.+.|+.|++ .|+++|.. |..|.||||+||. .|+.++|++|+++|+++ +.+|.+|.|
T Consensus 133 ~~~L~~A~~~g~~~~v~~ll~--~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~v-n~~d~~g~T 209 (497)
T 3lvq_E 133 PQRLWTAICNRDLLSVLEAFA--NGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHL-DAKAADGNT 209 (497)
T ss_dssp HHHHHHHHHHTCHHHHHHHHH--TTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCT-TCCCSSSCC
T ss_pred HHHHHHHHhccCHHHHHHHHh--hcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCC-CccCCCCCc
Confidence 356777777777777777777 56776665 6667777777755 66777777777777775 667777777
Q ss_pred HHHHHHHcCCHHHHHHHHHcccC
Q 044420 118 PLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 118 pL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|||+|+..|+.+++++|+++|++
T Consensus 210 pLh~A~~~g~~~~v~~Ll~~ga~ 232 (497)
T 3lvq_E 210 ALHYAALYNQPDCLKLLLKGRAL 232 (497)
T ss_dssp HHHHHTTTTCHHHHHHHHHTCCC
T ss_pred HHHHHHHcCCHHHHHHHHHcCCC
Confidence 77777777777777777776665
|
| >2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.3e-20 Score=154.48 Aligned_cols=108 Identities=27% Similarity=0.261 Sum_probs=98.4
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcH
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTA 84 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~Tp 84 (545)
.+.+|+||||.||..|+.++++.|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.||
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g-~~~~-~~d~~g~t~L~~A~~~~~~~~~~~Ll~--~g~~~~~~d~~g~tp 78 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLS--KG-ADVN-ARSKDGNTPLHLAAKNGHAEIVKLLLA--KGADVNARSKDGNTP 78 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTT--TT-CCSS-CCCSSSCCTTHHHHTTTCHHHHHHHTT--TTCCTTCCCTTCCCT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHH--cC-CCCC-CcCCCCCCHHHHHHHcCcHHHHHHHHH--cCCCCcccCCCCCCH
Confidence 45679999999999999999999999 56 6665 688999999999999999999999999 899999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 85 FCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 85 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
||+|+..|+.+++++|+++|+++ +.++..|.+|-
T Consensus 79 l~~A~~~~~~~~~~~Ll~~ga~~-n~~~~~~~~~~ 112 (115)
T 2l6b_A 79 EHLAKKNGHHEIVKLLDAKGADV-NARSWGSSHHH 112 (115)
T ss_dssp THHHHTTTCHHHHHHHHTTSSSH-HHHSCCCC---
T ss_pred HHHHHHCCCHHHHHHHHHcCCCC-CcCCccccccc
Confidence 99999999999999999999997 88899998873
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=142.84 Aligned_cols=91 Identities=22% Similarity=0.268 Sum_probs=85.3
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
..|.+|+||||+|+..|+.+++++|++ .+++++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~ 95 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMA--NGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADV-XAQDKFGKTAFD 95 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHH--TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHH--cCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccccCCCcHHH
Confidence 578899999999999999999999999 79999999999999999999999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHH
Q 044420 121 MAAVLAQRDMALYL 134 (545)
Q Consensus 121 ~A~~~g~~~iv~~L 134 (545)
+|+..|+.+++++|
T Consensus 96 ~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 96 ISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHh
Confidence 99999999999987
|
| >2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A | Back alignment and structure |
|---|
Probab=99.71 E-value=2.2e-17 Score=135.19 Aligned_cols=91 Identities=27% Similarity=0.306 Sum_probs=83.1
Q ss_pred cccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCc
Q 044420 4 NVYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNT 83 (545)
Q Consensus 4 ~~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~T 83 (545)
..+.+|.||||.||..|+.+++++|++ .+ .+++ ..|..|+||||+|+..|+.+++++|++ .|++++.+|..|.|
T Consensus 19 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~--~g-~~i~-~~d~~g~tpLh~A~~~~~~~~v~~Ll~--~ga~~~~~d~~g~t 92 (110)
T 2zgd_A 19 HMGSDLGKKLLEAARAGQDDEVRILMA--NG-ADVA-AKDKNGSTPLHLAARNGHLEVVKLLLE--AGADVXAQDKFGKT 92 (110)
T ss_dssp ---CCHHHHHHHHHHHTCHHHHHHHHH--TT-CCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCC
T ss_pred ccCCccchHHHHHHHcCCHHHHHHHHH--cC-CCCC-ccCCCCCCHHHHHHHcCCHHHHHHHHH--cCCCccccccCCCc
Confidence 456789999999999999999999999 66 6665 678999999999999999999999999 79999999999999
Q ss_pred HHHHHHHhCCHHHHHHH
Q 044420 84 AFCFAVAAGSIHIAKIM 100 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~L 100 (545)
|||+|+..|+.+++++|
T Consensus 93 pl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 93 AFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHh
Confidence 99999999999999986
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 545 | ||||
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 2e-10 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 4e-09 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 6e-07 | |
| d1n11a_ | 408 | d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta | 1e-04 | |
| d1oy3d_ | 255 | d.211.1.1 (D:) Transcription factor inhibitor I-ka | 3e-08 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 8e-07 | |
| d2fo1e1 | 277 | d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele | 5e-04 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 9e-07 | |
| d2ajaa1 | 346 | a.118.24.1 (A:3-348) Hypothetical protein LPG2416 | 3e-06 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 1e-06 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 1e-04 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 4e-04 | |
| d1wdya_ | 285 | d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas | 0.004 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 9e-05 | |
| d1k1aa_ | 228 | d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: | 3e-04 | |
| d1ixva_ | 229 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 1e-04 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 3e-04 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 0.001 | |
| d1sw6a_ | 301 | d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker | 0.004 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 4e-04 | |
| d1uoha_ | 223 | d.211.1.1 (A:) 26S proteasome non-ATPase regulator | 0.002 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 60.4 bits (145), Expect = 2e-10
Identities = 71/371 (19%), Positives = 114/371 (30%), Gaps = 58/371 (15%)
Query: 12 PLQKAALKGNWPTAKHLLGNE-DPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
PL A+ G+ P K+LL P ET LH+AA A T + LL+
Sbjct: 3 PLHVASFMGHLPIVKNLLQRGASPNVSNVKV-----ETPLHMAARAGHTEVAKYLLQ--N 55
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDM 130
+ + ++ T A G ++ K++L+ N + TPL++AA +
Sbjct: 56 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN-PNLATTAGHTPLHIAAREGHVET 114
Query: 131 ALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVL 190
L L + ++ +T + L + +LL + A N T LHV
Sbjct: 115 VLALLEKEASQACMTKKGFTPLHVAAKYGKVR--VAELLLERDAHPNAAGKNGLTPLHVA 172
Query: 191 ARKPSAFASRNQGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLLFDAAE 247
H+ L +VK L + +T L
Sbjct: 173 VH-----------------HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ------- 208
Query: 248 LGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDH 307
E L+ + + H+A HA + L+ L +
Sbjct: 209 -NQVEVARSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL----GNK 262
Query: 308 DQNNMLHLAAKSPHPS--RVSIVSGA-----------ALQMHRELLWFKEVE-KIVQPTF 353
LHL A+ H V I G L + K V+ +
Sbjct: 263 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD 322
Query: 354 REMKNSEGKTP 364
K G +P
Sbjct: 323 VNAKTKLGYSP 333
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.5 bits (135), Expect = 4e-09
Identities = 64/362 (17%), Positives = 113/362 (31%), Gaps = 62/362 (17%)
Query: 12 PLQKAALKGNWPTAKHLLGNE-DPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM- 69
PL AA G+ AK+LL N+ + +T LH AA T V+ LL+
Sbjct: 36 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDD-----QTPLHCAARIGHTNMVKLLLENNA 90
Query: 70 ------------------------------KPEDLTLQDRNGNTAFCFAVAAGSIHIAKI 99
K + G T A G + +A++
Sbjct: 91 NPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 150
Query: 100 MLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIST 159
+L+++ G +TPL++A D+ L + + L
Sbjct: 151 LLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQN 209
Query: 160 DLHDLALKLLEDHSGLAVARDGNYETALHVLARK------------PSAFASRNQGLLTR 207
+ + L + G A A T LH+ A++ + N+ LT
Sbjct: 210 QVEVA--RSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 267
Query: 208 LMHSALQLVKSLWEAILKR--DDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLV 265
L A + + + ++K T + P H+ L + + + V
Sbjct: 268 LHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASH----YGNIKLVKFLLQHQADV 323
Query: 266 HELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRV 325
+ S H A H +I L+ + G + D L +A + + S
Sbjct: 324 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE----VSSDGTTPLAIAKRLGYISVT 379
Query: 326 SI 327
+
Sbjct: 380 DV 381
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.6 bits (117), Expect = 6e-07
Identities = 45/273 (16%), Positives = 85/273 (31%), Gaps = 30/273 (10%)
Query: 116 MTPLYMAAVLAQRDMALYLYD---DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDH 172
+TPL++A+ + + L + + + L + H K L +
Sbjct: 1 LTPLHVASFMGHLPIVKNLLQRGASPNVSNV---KVETPLHMAARAG--HTEVAKYLLQN 55
Query: 173 SGLAVARDGNYETALHVLARKPS-----------AFASRNQGLLTRLMHSALQLVKSLWE 221
A+ + +T LH AR A + +H A +
Sbjct: 56 KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115
Query: 222 AILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVL 281
L ++ + +K L AA+ G +AEL+ + N + H+AV
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVR-VAELLLERDAHPNAAGKNGLTPLHVAVH 174
Query: 282 HRHANIFNLIYEIGFTKE---------LMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAA 332
H + +I L+ G + L K + L + S+
Sbjct: 175 HNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTP 234
Query: 333 LQMHRELLWFKEVEKIVQPTFR-EMKNSEGKTP 364
L + + + V ++ + N G TP
Sbjct: 235 LHLAAQEGHAEMVALLLSKQANGNLGNKSGLTP 267
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (97), Expect = 1e-04
Identities = 28/145 (19%), Positives = 49/145 (33%), Gaps = 7/145 (4%)
Query: 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLM 69
PL A +G+ P A L+ + + T LH+A+ V+ L
Sbjct: 265 LTPLHLVAQEGHVPVADVLIKHGVMVDATT----RMGYTPLHVASHYGNIKLVK--FLLQ 318
Query: 70 KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRD 129
D+ + + G + A G I ++LK + TPL +A L
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP-NEVSSDGTTPLAIAKRLGYIS 377
Query: 130 MALYLYDDAKAKDNLTPEDQNALFF 154
+ L + D++ + F
Sbjct: 378 VTDVLKVVTDETSFVLVSDKHRMSF 402
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.8 bits (125), Expect = 3e-08
Identities = 41/250 (16%), Positives = 69/250 (27%), Gaps = 12/250 (4%)
Query: 47 ETLLHLAAGARQTGFVEELLKLM-KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNE 105
+T LHLA + F++ LL E L LQ+ G TA A G + +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL-YAAG 68
Query: 106 RLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165
+ + T L++A + A L + + C H A
Sbjct: 69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPA 128
Query: 166 LKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILK 225
+ + E + A G T L + + + +
Sbjct: 129 A--------VDSQPNPENEEEPRDEDWRLQLEAENYDG-HTPLHVAVIHKDAEMVRLLRD 179
Query: 226 RDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285
L A E L L+ + D R+ A+L +
Sbjct: 180 AGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD-PTARMYGGRTPLGSALLRPNP 238
Query: 286 NIFNLIYEIG 295
+ L+ G
Sbjct: 239 ILARLLRAHG 248
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 48.6 bits (114), Expect = 8e-07
Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 23/288 (7%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER 106
E+ + L A + + E + + + R+ T + + S ++ ++ +
Sbjct: 1 ESPIKLHTEAAGSYAITEPI--TRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAK 58
Query: 107 LLTMRG-------GENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCIST 159
G + TPL +A + +R + YL +++AL +
Sbjct: 59 ECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANR 118
Query: 160 DLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSL 219
D + L + ++ ++ + L + K
Sbjct: 119 DFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH--------NEGRDQVASAKLLVEKGA 170
Query: 220 WEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIA 279
+ K L AA++ N + L+ + D++ ++ +A
Sbjct: 171 KVDYDGAARKDSEK--YKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLA 228
Query: 280 VLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSI 327
+ + + G + E D + LA + H + V I
Sbjct: 229 AQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDI 272
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Score = 40.1 bits (92), Expect = 5e-04
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 2/56 (3%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLK 102
+T + LAA + V L++ + + D +TA A A +I I +
Sbjct: 222 KTPIMLAAQEGRIEVVMYLIQ--QGASVEAVDATDHTARQLAQANNHHNIVDIFDR 275
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 48.7 bits (115), Expect = 9e-07
Identities = 35/301 (11%), Positives = 76/301 (25%), Gaps = 44/301 (14%)
Query: 26 KHLLGNEDPRSILCAGIAKGY--ETLLHLAAGARQTGFVEELLKLMKP-EDLTLQDRNGN 82
+ N + + + KG E + +AA + ++ L L+ E + +
Sbjct: 68 YYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY 127
Query: 83 TAFCFAVAAGSIHIAKIMLKKN-ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAK 141
AF A G +H+ + + ++ M EN +AA + L + A +
Sbjct: 128 QAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTE 187
Query: 142 DNLTPEDQNALFFTCISTDLHDLAL-KLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200
+ +N F + + L D + + + A
Sbjct: 188 ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVN 247
Query: 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICS 260
+ + + + L + + + L+ S
Sbjct: 248 RLKEMHDAFKLSNP------DGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLL-S 300
Query: 261 YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320
P + D N +L LA +
Sbjct: 301 IPGIKALAPTAT--------------------------------IPGDANELLRLALRLG 328
Query: 321 H 321
+
Sbjct: 329 N 329
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Score = 47.2 bits (111), Expect = 3e-06
Identities = 41/270 (15%), Positives = 75/270 (27%), Gaps = 27/270 (10%)
Query: 8 NICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLK 67
V AA+ G L I+ A+ Y LAA + L +
Sbjct: 89 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENY-QAFRLAAENGHLHVLNRLCE 147
Query: 68 LMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKK--NERLLTMRGGENMTPLYMAAVL 125
L E + + AF A G +H+ + + E ++ + A
Sbjct: 148 LAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR 207
Query: 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYET 185
++ +L D L + + + H V R
Sbjct: 208 GHHNVINFLLD---CPVMLAYAEIHE------FEYGEKYVNPFIARH----VNRLKEMHD 254
Query: 186 ALHVLARKPS------AFASRNQGLLTRLMHSA----LQLVKSLWEAILKRDDSEFTDLI 235
A + + + +L L+ L ++ L + + +
Sbjct: 255 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 314
Query: 236 RKPSHLLFDAAELGNFEFLAELICSYPDLV 265
+ LL A LGN L+ S P ++
Sbjct: 315 GDANELLRLALRLGNQG-ACALLLSIPSVL 343
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.0 bits (113), Expect = 1e-06
Identities = 26/134 (19%), Positives = 46/134 (34%), Gaps = 4/134 (2%)
Query: 12 PLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKP 71
L AA KG+ K LL C + + L++ + LL L
Sbjct: 151 ALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLL-LDHG 209
Query: 72 EDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMA 131
D+ ++ G T AV + + + +L++ + + T L +A L + +A
Sbjct: 210 ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIA 269
Query: 132 LYLYD---DAKAKD 142
L D
Sbjct: 270 ELLCKRGASTDCGD 283
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.5 bits (96), Expect = 1e-04
Identities = 47/285 (16%), Positives = 84/285 (29%), Gaps = 32/285 (11%)
Query: 80 NGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAK 139
N AV + + + +L+ + TPL+ A +++ D+ L
Sbjct: 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 140 AKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFAS 199
I+ + L L D TA +A
Sbjct: 64 DPVLRKKNGATPFLLAAIAGSVKLLKLF--LSKGADVNECDFYGFTAFM-----EAAVYG 116
Query: 200 RNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELIC 259
+ + L A ++ + +R + + L DAAE G+ E L L+
Sbjct: 117 KVKALKFLYKRGANVNLRRKTKEDQERLR-------KGGATALMDAAEKGHVEVLKILLD 169
Query: 260 SYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKS 319
V+ D+ R+ A+L + I + + L LA +
Sbjct: 170 EMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEK 229
Query: 320 PHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTP 364
H V + LL + +E +S+GKT
Sbjct: 230 KHLGLV-----------QRLLEQEHIEI-------NDTDSDGKTA 256
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 4e-04
Identities = 45/289 (15%), Positives = 82/289 (28%), Gaps = 25/289 (8%)
Query: 12 PLQKAALKGNWPTAKHLLGNE-DPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK 70
L KA + + LL + +G T LH A + VE LL+
Sbjct: 8 LLIKAVQNEDVDLVQQLLEGGANVN----FQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 71 PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDM 130
+ A + + T AAV +
Sbjct: 64 DPV---LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKA 120
Query: 131 ALYLYDDAKAKDNLTPEDQNALFFTCI-STDLHDLALKLLEDHSGLAVARDGNYETALHV 189
+LY + ++ +T L A G+ E +
Sbjct: 121 LKFLYKRGANVNLRRKTKEDQERLRKGGATALM-------------DAAEKGHVEVLKIL 167
Query: 190 LARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSH---LLFDAA 246
L + + + L+H+ L S EAI D+ + L A
Sbjct: 168 LDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAV 227
Query: 247 ELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIG 295
E + + L+ +++ D + ++ +AV + I L+ + G
Sbjct: 228 EKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG 276
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.3 bits (85), Expect = 0.004
Identities = 41/290 (14%), Positives = 86/290 (29%), Gaps = 33/290 (11%)
Query: 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTAFCFAVAAGSIHIAKIMLKKNE 105
LL A V++LL+ ++ Q+ G T AV I +++L+
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGA 63
Query: 106 RLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLA 165
+R TP +AA+ + + A + + L
Sbjct: 64 DP-VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALK 122
Query: 166 LKL--------LEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVK 217
TAL A K ++++K
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGH-----------------VEVLK 165
Query: 218 SLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFH 277
L + + D + ++ R +++ + E + L+ + V+ + ++
Sbjct: 166 ILLDE-MGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLI 224
Query: 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSI 327
+AV +H + + E + + D D L LA + +
Sbjct: 225 LAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLAVELKLKKIAEL 271
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.8 bits (96), Expect = 9e-05
Identities = 31/243 (12%), Positives = 73/243 (30%), Gaps = 23/243 (9%)
Query: 47 ETLLHLAAGARQTGFVEELLKLM--KPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKN 104
+T LH+A V L+ L +L + + T AV + ++++
Sbjct: 4 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG 63
Query: 105 ERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDL 164
+ + + + L A +L + +
Sbjct: 64 ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD-------------- 109
Query: 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAIL 224
+ L VA + + + +L + + + + + A++ +L
Sbjct: 110 ------GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 163
Query: 225 KRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284
+ + + S L A+ G + L+ S D + +N + +A R
Sbjct: 164 LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRV 222
Query: 285 ANI 287
+I
Sbjct: 223 IDI 225
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 3e-04
Identities = 41/254 (16%), Positives = 75/254 (29%), Gaps = 30/254 (11%)
Query: 80 NGNTAFCFAVAAGSIHIAKIMLKKNERL---LTMRGGENMTPLYMAAVLAQRDMALYLYD 136
+G+T AV G++ ++ ++ L + TPL++A + + L
Sbjct: 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVT 61
Query: 137 DAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSA 196
+ L Q A C L A
Sbjct: 62 AGASPMALDRHGQTAAHLACEHRSPT-------------------CLRALLDSAAPGTLD 102
Query: 197 FASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAE 256
+RN LT L + + + +L+R I+ L A E N + +
Sbjct: 103 LEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVE-NNSLSMVQ 161
Query: 257 LICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLA 316
L+ + V+ + S H A + + G L K+ + L +A
Sbjct: 162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL----KNCHNDTPLMVA 217
Query: 317 AKSPHPSRVSIVSG 330
+ I+ G
Sbjct: 218 RSRRV---IDILRG 228
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.3 bits (95), Expect = 1e-04
Identities = 15/73 (20%), Positives = 24/73 (32%)
Query: 242 LFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELM 301
L A F + EL+ S P L+ + D + R H +V + I + + L
Sbjct: 4 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 63
Query: 302 ATFKDHDQNNMLH 314
D
Sbjct: 64 DYPDDSGWTPFHI 76
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.8 bits (94), Expect = 3e-04
Identities = 24/117 (20%), Positives = 40/117 (34%), Gaps = 7/117 (5%)
Query: 13 LQKAALKGNWPTAKHLLGNEDPRSILCAG-----IAKGYETLLHLAAGARQTGFVEEL-L 66
+ + + G AK+ L + E+ + G R+ +E L L
Sbjct: 185 IITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 244
Query: 67 KLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123
K + L QD NG+T A G+I I +L + + P+ A
Sbjct: 245 KWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIANKSGLRPVDFGA 300
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.9 bits (89), Expect = 0.001
Identities = 32/259 (12%), Positives = 72/259 (27%), Gaps = 46/259 (17%)
Query: 62 VEELLKLMKPEDLTLQ---DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTP 118
++E+ L L D +GNT + + ++ + K ++K
Sbjct: 85 LQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGS------------- 131
Query: 119 LYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVA 178
+ DN+ + + D L + L
Sbjct: 132 ------------------NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLI-L 172
Query: 179 RDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKP 238
D T LH + S + L +VK I + + + K
Sbjct: 173 EDSMNRTILHHIIIT-SGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 231
Query: 239 SHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTK 298
E + +++ ++++ D N + +IA + +I + + + G
Sbjct: 232 GERKDSILENLDLKWIIA------NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285
Query: 299 ELMATFKDHDQNNMLHLAA 317
+ + + A
Sbjct: 286 FI----ANKSGLRPVDFGA 300
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.0 bits (84), Expect = 0.004
Identities = 26/163 (15%), Positives = 49/163 (30%), Gaps = 19/163 (11%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
T LH V+ L+K + D G + AV + + + + + L
Sbjct: 109 TPLHWLTSIANLELVKHLVK--HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL 166
Query: 108 LTM---RGGENMTPLYMAAVLAQRD-------------MALYLYDDAKAKDNLTPEDQNA 151
N T L+ + + M + + + T E ++
Sbjct: 167 YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESK 226
Query: 152 LFFTCISTDLHDLALKLLEDHSGLAV-ARDGNYETALHVLARK 193
L L+ + A+D N +T L++ AR
Sbjct: 227 PNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARL 269
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (91), Expect = 4e-04
Identities = 35/240 (14%), Positives = 71/240 (29%), Gaps = 35/240 (14%)
Query: 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAK 141
N C +G + K + ++ L T ++ T L+ A ++ +L
Sbjct: 4 NLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63
Query: 142 DNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRN 201
++ + L + D +K L A + N T LH A K
Sbjct: 64 NDKDDAGWSPLHIAASAG--RDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNR------ 115
Query: 202 QGLLTRLMHSALQLVKSLWEA---ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELI 258
++ L E +D E T + R + + ++
Sbjct: 116 -----------HEIAVMLLEGGANPDAKDHYEATAMHRAAAK---------GNLKMIHIL 155
Query: 259 CSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAK 318
Y + D + H+A L+ G + + ++ ++ L +A
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYI----ENKEEKTPLQVAKG 211
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 0.002
Identities = 37/244 (15%), Positives = 79/244 (32%), Gaps = 27/244 (11%)
Query: 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL 107
++ A + + ++E + L T D++ TA +A +AG I + +L+ +
Sbjct: 5 LMVCNLAYSGKLEELKESI-LADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV 63
Query: 108 LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167
A+ + L A+ N ++ S + H++A+
Sbjct: 64 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQV--NAVNQNGCTPLHYAASKNRHEIAVM 121
Query: 168 LLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRD 227
LLE A+D TA+H A K + ++ + +D
Sbjct: 122 LLE-GGANPDAKDHYEATAMHRAAAKG--------------NLKMIHILLYYKASTNIQD 166
Query: 228 DSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287
T L E A+L+ S ++ + ++ +A +
Sbjct: 167 TEGNTPLHLACDE--------ERVE-EAKLLVSQGASIYIENKEEKTPLQVAKGGLGLIL 217
Query: 288 FNLI 291
++
Sbjct: 218 KRMV 221
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 545 | |||
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1n11a_ | 408 | Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 100.0 | |
| d1uoha_ | 223 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 100.0 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 100.0 | |
| d1oy3d_ | 255 | Transcription factor inhibitor I-kappa-B-beta, IKB | 100.0 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1ixva_ | 229 | 26S proteasome non-ATPase regulatory subunit 10, g | 100.0 | |
| d1wdya_ | 285 | RNase L, 2-5a-dependent ribonuclease {Human (Homo | 100.0 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1s70b_ | 291 | Myosin phosphatase targeting subunit 1, MYPT1 {Chi | 100.0 | |
| d2fo1e1 | 277 | Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | 100.0 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.97 | |
| d1iknd_ | 221 | I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606 | 99.97 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.97 | |
| d1k1aa_ | 228 | bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | 99.96 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.96 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.95 | |
| d2ajaa1 | 346 | Hypothetical protein LPG2416 {Legionella pneumophi | 99.95 | |
| d1ot8a_ | 209 | Neurogenic locus notch receptor domain {Fruit fly | 99.94 | |
| d1ihba_ | 156 | p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606] | 99.94 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.94 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.93 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.93 | |
| d1bd8a_ | 156 | Cell cycle inhibitor p19ink4D {Human (Homo sapiens | 99.92 | |
| d1sw6a_ | 301 | Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch | 99.92 | |
| d1awcb_ | 153 | GA bindinig protein (GABP) beta 1 {Mouse (Mus musc | 99.91 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.91 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.9 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.89 | |
| d1myoa_ | 118 | Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116] | 99.88 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.88 | |
| d1bi7b_ | 125 | Cell cycle inhibitor p16ink4A {Human (Homo sapiens | 99.87 | |
| d1ycsb1 | 130 | 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | 99.86 | |
| d1dcqa1 | 154 | Pyk2-associated protein beta {Mouse (Mus musculus) | 99.83 |
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.3e-45 Score=375.59 Aligned_cols=330 Identities=19% Similarity=0.172 Sum_probs=277.2
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHH
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAV 89 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~ 89 (545)
.||||.||..|+.++|++|++ .| .+++ ..|..|+||||+||..|+.++|++|++ +|++++.+|.+|.||||+|+
T Consensus 1 ~TpL~~Aa~~g~~~~v~~Ll~--~g-~~in-~~d~~g~TpL~~A~~~g~~~iv~~Ll~--~gadi~~~~~~g~t~L~~A~ 74 (408)
T d1n11a_ 1 LTPLHVASFMGHLPIVKNLLQ--RG-ASPN-VSNVKVETPLHMAARAGHTEVAKYLLQ--NKAKVNAKAKDDQTPLHCAA 74 (408)
T ss_dssp CCHHHHHHHHTCHHHHHHHHH--TT-CCSC-CSSSCCCCHHHHHHHHTCHHHHHHHHH--HTCCSSCCCTTSCCHHHHHH
T ss_pred CChHHHHHHCcCHHHHHHHHH--CC-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHH--CcCCCCCCCCCCCCHHHHHH
Confidence 499999999999999999999 67 7776 789999999999999999999999999 79999999999999999999
Q ss_pred HhCCHHHHHHHHHcCcccc--------------------------------cCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 90 AAGSIHIAKIMLKKNERLL--------------------------------TMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 90 ~~g~~~iv~~Ll~~~~~~~--------------------------------~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
..|+.+++++|+..+++.. ...+.++.++++.|+..++.+++++|+++
T Consensus 75 ~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~ 154 (408)
T d1n11a_ 75 RIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER 154 (408)
T ss_dssp HHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HcCCHHHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHc
Confidence 9999999999997654321 34577899999999999999999999999
Q ss_pred ccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch---------hhHh
Q 044420 138 AKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL---------LTRL 208 (545)
Q Consensus 138 ~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~---------~~~~ 208 (545)
+++++..+..+.+||++|+..+.. + +.++|..+|.+++..+..|.||+|.++.....+....+.. ..+.
T Consensus 155 ~~~~~~~~~~~~~~L~~A~~~~~~-~-~~~~Ll~~g~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 232 (408)
T d1n11a_ 155 DAHPNAAGKNGLTPLHVAVHHNNL-D-IVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGV 232 (408)
T ss_dssp TCCTTCCCSSCCCHHHHHHHTTCH-H-HHHHHGGGTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCC
T ss_pred CCCCCcCCCcCchHHHHHHHcCCH-H-HHHHHHhcCCcccccCCCCCCcchhhhccchhhhhhhhhhccccccccCCCCC
Confidence 999888899999999998877653 4 5577777899999999999999999998876543322211 0000
Q ss_pred HHHH---HHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 209 MHSA---LQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 209 ~~~~---~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
+... ..--..+++...... ...+..+..|.||++.|++.++.+++++|+++|++ ++..+..+.||||.|+..++.
T Consensus 233 t~l~~a~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~-~~~~~~~~~t~L~~~~~~~~~ 310 (408)
T d1n11a_ 233 TPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM-VDATTRMGYTPLHVASHYGNI 310 (408)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHHHSSCS
T ss_pred CHHHHHHHhCcHhHhhhhhccc-cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc-cccccccccccchhhcccCcc
Confidence 0000 000012334444443 44555678899999999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChh
Q 044420 286 NIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPR 365 (545)
Q Consensus 286 ~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl 365 (545)
++++++++.|++ +|.+|.+|+||||+|+++|+.+++++|.+ +|++++.+|++|+|||
T Consensus 311 ~~~~~ll~~g~~----in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~-------------------~GAd~n~~d~~G~t~L 367 (408)
T d1n11a_ 311 KLVKFLLQHQAD----VNAKTKLGYSPLHQAAQQGHTDIVTLLLK-------------------NGASPNEVSSDGTTPL 367 (408)
T ss_dssp HHHHHHHHTTCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHH-------------------TTCCSCCCCSSSCCHH
T ss_pred eeeeeecccccc----ccccCCCCCCHHHHHHHcCCHHHHHHHHH-------------------CCCCCCCCCCCCCCHH
Confidence 999999999998 88999999999999999999999888743 3889999999999999
Q ss_pred hhhHhhh
Q 044420 366 ELFSIEH 372 (545)
Q Consensus 366 ~~a~~~~ 372 (545)
|+|++..
T Consensus 368 ~~A~~~~ 374 (408)
T d1n11a_ 368 AIAKRLG 374 (408)
T ss_dssp HHHHHTT
T ss_pred HHHHHcC
Confidence 9998764
|
| >d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Ankyrin-R species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-40 Score=338.08 Aligned_cols=307 Identities=21% Similarity=0.189 Sum_probs=255.4
Q ss_pred ccccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCC--------------
Q 044420 5 VYLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMK-------------- 70 (545)
Q Consensus 5 ~~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~-------------- 70 (545)
.+.+|+||||+||+.|+.+++++|++ +| ++++ .++.+|+||||+|+..|+.+++++|+....
T Consensus 29 ~d~~g~TpL~~A~~~g~~~iv~~Ll~--~g-adi~-~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~~~ 104 (408)
T d1n11a_ 29 SNVKVETPLHMAARAGHTEVAKYLLQ--NK-AKVN-AKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 104 (408)
T ss_dssp SSSCCCCHHHHHHHHTCHHHHHHHHH--HT-CCSS-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHH--Cc-CCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccchhh
Confidence 45679999999999999999999999 67 7666 789999999999999999999999986311
Q ss_pred -----------------CcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHH
Q 044420 71 -----------------PEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALY 133 (545)
Q Consensus 71 -----------------~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~ 133 (545)
+...+..|..|.++++.|+..++.++++.|+++|+++ +..+.+|.+|||+|+..|+.+++++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~-~~~~~~~~~~L~~A~~~~~~~~~~~ 183 (408)
T d1n11a_ 105 IAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHP-NAAGKNGLTPLHVAVHHNNLDIVKL 183 (408)
T ss_dssp HHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSCCCHHHHHHHTTCHHHHHH
T ss_pred hhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCcCchHHHHHHHcCCHHHHHH
Confidence 1223556788999999999999999999999999997 8899999999999999999999999
Q ss_pred HHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch---------
Q 044420 134 LYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL--------- 204 (545)
Q Consensus 134 Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~--------- 204 (545)
|+++|++++..+..|.+|++.+...... .....+...+......+.+|.||||+|+..++.+..+....
T Consensus 184 Ll~~g~~~~~~~~~~~t~l~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 261 (408)
T d1n11a_ 184 LLPRGGSPHSPAWNGYTPLHIAAKQNQV--EVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGN 261 (408)
T ss_dssp HGGGTCCSCCCCTTCCCHHHHHHHTTCH--HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCC
T ss_pred HHhcCCcccccCCCCCCcchhhhccchh--hhhhhhhhccccccccCCCCCCHHHHHHHhCcHhHhhhhhcccccccccc
Confidence 9999999888899999999988776542 44455556666667778888888888888876554332221
Q ss_pred hh-------HhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHH
Q 044420 205 LT-------RLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFH 277 (545)
Q Consensus 205 ~~-------~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh 277 (545)
.. .......++++.+++. + .+.+..+..+.||||.++..++.++++++++.|++ ++.+|.+|+||||
T Consensus 262 ~~g~~~l~~a~~~~~~~i~~~Ll~~----g-~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g~~-in~~d~~G~T~Lh 335 (408)
T d1n11a_ 262 KSGLTPLHLVAQEGHVPVADVLIKH----G-VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQAD-VNAKTKLGYSPLH 335 (408)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHHH----T-CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCC-TTCCCTTSCCHHH
T ss_pred CCCCChhhhhhhcCcHHHHHHHHHC----C-CccccccccccccchhhcccCcceeeeeecccccc-ccccCCCCCCHHH
Confidence 00 0112223444444443 3 33445567889999999999999999999999999 9999999999999
Q ss_pred HHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 278 IAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 278 ~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
+|+++|+.++|++|+++|++ +|.+|++|+||||+|++.|+.+++++|
T Consensus 336 ~A~~~g~~~iv~~Ll~~GAd----~n~~d~~G~t~L~~A~~~~~~~iv~~L 382 (408)
T d1n11a_ 336 QAAQQGHTDIVTLLLKNGAS----PNEVSSDGTTPLAIAKRLGYISVTDVL 382 (408)
T ss_dssp HHHHTTCHHHHHHHHHTTCC----SCCCCSSSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999 788999999999999999999998876
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-37 Score=289.46 Aligned_cols=218 Identities=21% Similarity=0.247 Sum_probs=183.0
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFA 88 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 88 (545)
+.+.|+.+|..|+.+.|+.+++ .++ ..++ .+|..|+||||+||..|+.+++++|++ .+......+..+.++++.+
T Consensus 3 ~~~~~~~~a~~G~~~~v~~~l~-~~~-~~~~-~~D~~G~TpLh~Aa~~g~~e~~~~l~~--~~~~~~~~~~~~~~~~~~~ 77 (223)
T d1uoha_ 3 SNLMVCNLAYSGKLEELKESIL-ADK-SLAT-RTDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIA 77 (223)
T ss_dssp SSSHHHHHHHTTCHHHHHHHHH-HCG-GGGG-CCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCCSCCCCTTCCCHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHH-hCC-CcCc-CcCCCCCCHHHHHHHhhhhcccccccc--ccccccccccccccccccc
Confidence 4678999999999999999988 455 5555 889999999999999999999999999 6788888888999999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHH
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKL 168 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~l 168 (545)
+..|+.+++++|+++|+++ +.+|.+|.||||+|+..|+.+++++|+++|++++
T Consensus 78 ~~~~~~~i~~~Ll~~~~d~-~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~-------------------------- 130 (223)
T d1uoha_ 78 ASAGRDEIVKALLGKGAQV-NAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-------------------------- 130 (223)
T ss_dssp HHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--------------------------
T ss_pred ccccccchhHHHhccCcee-EeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCC--------------------------
Confidence 9999999999999999997 8999999999999999999999999999887622
Q ss_pred HHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhc
Q 044420 169 LEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAEL 248 (545)
Q Consensus 169 L~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~ 248 (545)
.+| ..|.||||+|+..
T Consensus 131 ---------~~~-------------------------------------------------------~~~~t~L~~a~~~ 146 (223)
T d1uoha_ 131 ---------AKD-------------------------------------------------------HYEATAMHRAAAK 146 (223)
T ss_dssp ---------CCC-------------------------------------------------------TTSCCHHHHHHHT
T ss_pred ---------CcC-------------------------------------------------------CCCCccchhhhhc
Confidence 222 4456677777777
Q ss_pred CcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 249 GNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 249 g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
|+.+++++|++.+.+ ++.+|.+|+||||+|+..|+.+++++|+++|++ ++.+|.+|+||||+|. .|+.++++.|
T Consensus 147 ~~~~~~~~L~~~~~~-i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad----~~~~d~~g~tpl~~A~-~~~~~i~~~L 220 (223)
T d1uoha_ 147 GNLKMIHILLYYKAS-TNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS----IYIENKEEKTPLQVAK-GGLGLILKRM 220 (223)
T ss_dssp TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC----SCCCCTTSCCHHHHCC-TTHHHHHHHH
T ss_pred CCcchhhhhccccce-eeeccCCCCceeccccccCcHHHHHHHHHCCCC----CCCCCCCCCCHHHHHH-CCCHHHHhcc
Confidence 777788888888888 788888888888888888888888888888887 6778888888888874 5666666554
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=4.4e-38 Score=298.48 Aligned_cols=97 Identities=22% Similarity=0.231 Sum_probs=87.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcc---cccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCc
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEELLKLMKPED---LTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMT 117 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 117 (545)
..+++|+||||+||+.|+.+++++|++ .+++ ++.+|..|+||||+|+..|+.+++++|+++|+++ +.+|.+|.|
T Consensus 4 ~i~~~G~t~Lh~A~~~~~~~~v~~Ll~--~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i-~~~d~~g~t 80 (255)
T d1oy3d_ 4 YVTEDGDTALHLAVIHQHEPFLDFLLG--FSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGV-LVAERGGHT 80 (255)
T ss_dssp CCCTTCCCHHHHHHHTTCHHHHHHHHH--HHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCS-SCCCTTSCC
T ss_pred cCCcCCCCHHHHHHHcCCHHHHHHHHH--cCCCcccccCcCCCCCCccchHHhhcccccccccccccccc-cccccccch
Confidence 467899999999999999999999998 5665 6778889999999999999999999999999997 889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHcccC
Q 044420 118 PLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 118 pL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|||+|+..++.+++++|++.+..
T Consensus 81 pL~~A~~~~~~~~~~~Ll~~~~~ 103 (255)
T d1oy3d_ 81 ALHLACRVRAHTCACVLLQPRPS 103 (255)
T ss_dssp HHHHHTTTTCHHHHHHHSSSCCS
T ss_pred hhhhhhccCchHHHHHHHhhccc
Confidence 99999999999999999987654
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=2e-38 Score=304.48 Aligned_cols=265 Identities=19% Similarity=0.164 Sum_probs=204.9
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHc------CCCcccccccCCCCc
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKL------MKPEDLTLQDRNGNT 83 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~------~~~~~~~~~d~~g~T 83 (545)
+||||.+++.+..+.+..++. ..+ ++...+++|+||||+||..|+.++|+.|+.. ..|+++|.+|.+|+|
T Consensus 1 ~~p~~~~~~~~~~~~~~~~l~-~~~---~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~T 76 (277)
T d2fo1e1 1 ESPIKLHTEAAGSYAITEPIT-RES---VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENT 76 (277)
T ss_dssp CCCCHHHHHHHSSSCCCSCCS-TTT---TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCC
T ss_pred CChHHHHHHhCCCHHHHHHHH-hcC---CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCe
Confidence 589997776554444444444 133 2323345799999999999999999887531 168999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHH
Q 044420 84 AFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHD 163 (545)
Q Consensus 84 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~ 163 (545)
|||+|+..|+.++|++|+++|+++ +.+|.+|.|||++|+..++.++++++...+...
T Consensus 77 pLh~A~~~g~~~iv~~Ll~~Gad~-n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~---------------------- 133 (277)
T d2fo1e1 77 PLMLAVLARRRRLVAYLMKAGADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLK---------------------- 133 (277)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHH----------------------
T ss_pred eecccccccccccccccccccccc-ccccccccccccchhhhcchhhhhhhhhccccc----------------------
Confidence 999999999999999999999997 899999999999999999999999988664310
Q ss_pred HHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCC---chhhhhhccCCCh
Q 044420 164 LALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRD---DSEFTDLIRKPSH 240 (545)
Q Consensus 164 ~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~g~t 240 (545)
..++..+..+.++.+.+...+..+ ....+..+.+...... .......+..|.|
T Consensus 134 ----------~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t 189 (277)
T d2fo1e1 134 ----------GDIEELDRNGMTALMIVAHNEGRD--------------QVASAKLLVEKGAKVDYDGAARKDSEKYKGRT 189 (277)
T ss_dssp ----------HTTSCCCTTSCCHHHHHHHSCSTT--------------HHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCC
T ss_pred ----------ccccccccccchhHHHHHhccccc--------------ccccccccccccccccccccccccccccCCCC
Confidence 112344556666666666555432 1222222222221111 1223345577999
Q ss_pred HHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCC
Q 044420 241 LLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSP 320 (545)
Q Consensus 241 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~ 320 (545)
|||.++..++.+++++++.......+.+|..|+||||+|+..|+.+++++|+++|++ +|.+|.+|+||||+|++.|
T Consensus 190 ~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gad----in~~d~~G~T~L~~A~~~~ 265 (277)
T d2fo1e1 190 ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS----VEAVDATDHTARQLAQANN 265 (277)
T ss_dssp THHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC----SSCCCSSSCCHHHHHHHTT
T ss_pred ccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCC----CCCcCCCCCCHHHHHHHcC
Confidence 999999999999999887766555889999999999999999999999999999999 7889999999999999999
Q ss_pred CCCcccccc
Q 044420 321 HPSRVSIVS 329 (545)
Q Consensus 321 ~~~~~~~L~ 329 (545)
+.+++++|.
T Consensus 266 ~~~iv~lL~ 274 (277)
T d2fo1e1 266 HHNIVDIFD 274 (277)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 999998874
|
| >d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-36 Score=276.36 Aligned_cols=217 Identities=18% Similarity=0.196 Sum_probs=193.7
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHc
Q 044420 46 YETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVL 125 (545)
Q Consensus 46 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 125 (545)
+++.||.+|..|+.+.|+.+++. .+.+++.+|..|+||||+|+..|+.+++++|++.+.+. ...+..+.++++.|+..
T Consensus 3 ~~~~~~~~a~~G~~~~v~~~l~~-~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~ 80 (223)
T d1uoha_ 3 SNLMVCNLAYSGKLEELKESILA-DKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPV-NDKDDAGWSPLHIAASA 80 (223)
T ss_dssp SSSHHHHHHHTTCHHHHHHHHHH-CGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCS-CCCCTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHhCCHHHHHHHHHh-CCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccc-ccccccccccccccccc
Confidence 57899999999999999888875 78899999999999999999999999999999999886 67788899999999999
Q ss_pred CCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchh
Q 044420 126 AQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLL 205 (545)
Q Consensus 126 g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~ 205 (545)
++.+++++|++++++++ .
T Consensus 81 ~~~~i~~~Ll~~~~d~~-----------------------------------~--------------------------- 98 (223)
T d1uoha_ 81 GRDEIVKALLGKGAQVN-----------------------------------A--------------------------- 98 (223)
T ss_dssp TCHHHHHHHHHTTCCTT-----------------------------------C---------------------------
T ss_pred cccchhHHHhccCceeE-----------------------------------e---------------------------
Confidence 99999999999887521 1
Q ss_pred hHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCch
Q 044420 206 TRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHA 285 (545)
Q Consensus 206 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~ 285 (545)
.|.+|.||||+|+..|+.+++++|+++|.+ ++.+|.+|.||||+|+..++.
T Consensus 99 ----------------------------~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d-~~~~~~~~~t~L~~a~~~~~~ 149 (223)
T d1uoha_ 99 ----------------------------VNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNL 149 (223)
T ss_dssp ----------------------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCH
T ss_pred ----------------------------eCCCCCchhhHHHHcCCHHHHHHHHHCCCC-CCCcCCCCCccchhhhhcCCc
Confidence 225678888888899999999999999999 899999999999999999999
Q ss_pred HHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhhhcCccccccCCCCCChh
Q 044420 286 NIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKIVQPTFREMKNSEGKTPR 365 (545)
Q Consensus 286 ~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l~~~~~~~~~n~~G~Tpl 365 (545)
+++++|++.+.+ +|.+|.+|+||||+|++.|+.+++++|.+ .|++++.+|.+|+|||
T Consensus 150 ~~~~~L~~~~~~----i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~-------------------~Gad~~~~d~~g~tpl 206 (223)
T d1uoha_ 150 KMIHILLYYKAS----TNIQDTEGNTPLHLACDEERVEEAKLLVS-------------------QGASIYIENKEEKTPL 206 (223)
T ss_dssp HHHHHHHHTTCC----SCCCCTTCCCHHHHHHHTTCHHHHHHHHH-------------------TTCCSCCCCTTSCCHH
T ss_pred chhhhhccccce----eeeccCCCCceeccccccCcHHHHHHHHH-------------------CCCCCCCCCCCCCCHH
Confidence 999999999998 88899999999999999999998888742 3889999999999999
Q ss_pred hhhHhhhhhhhhh
Q 044420 366 ELFSIEHSSLLRS 378 (545)
Q Consensus 366 ~~a~~~~~~l~~~ 378 (545)
|+|...+.+++++
T Consensus 207 ~~A~~~~~~i~~~ 219 (223)
T d1uoha_ 207 QVAKGGLGLILKR 219 (223)
T ss_dssp HHCCTTHHHHHHH
T ss_pred HHHHCCCHHHHhc
Confidence 9997766665543
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.2e-35 Score=279.99 Aligned_cols=271 Identities=20% Similarity=0.177 Sum_probs=232.5
Q ss_pred ccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHH
Q 044420 7 LNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFC 86 (545)
Q Consensus 7 ~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh 86 (545)
.++.|+||.|++.|+.++|++|++ .| .+++...+..|+||||+|+..|+.+++++|++ .+...+..+..+.+|.+
T Consensus 3 ~~~~~~L~~Ai~~~~~e~vk~Ll~--~G-~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~--~~~~~~~~~~~~~~~~~ 77 (285)
T d1wdya_ 3 VEDNHLLIKAVQNEDVDLVQQLLE--GG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLR--HGADPVLRKKNGATPFL 77 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH--TT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTCCCHHH
T ss_pred CCCcHHHHHHHHcCCHHHHHHHHH--CC-CCcCccCCCCCCCHHHHHHHcCCHHHhhhhcc--ccccccccccccchhhH
Confidence 467899999999999999999999 77 77775666789999999999999999999999 78899999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC----------CCCChhhHHHHH
Q 044420 87 FAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL----------TPEDQNALFFTC 156 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~----------~~~~~t~l~~aa 156 (545)
.|+..+..+.....++...+. ...+..|.|+++.|+..++...++.++....+++.. ...|.||||+|+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~ 156 (285)
T d1wdya_ 78 LAAIAGSVKLLKLFLSKGADV-NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAA 156 (285)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHH
T ss_pred HHhhcCCccccchhhhhcccc-cccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHH
Confidence 999999999999999998775 678889999999999999999999999887664332 345788999988
Q ss_pred HhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhcc
Q 044420 157 ISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIR 236 (545)
Q Consensus 157 ~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 236 (545)
..+ ..+.+..++.+.|.+++..+..|.++++.+...+.... .. .+++.+++.+ .+++.++.
T Consensus 157 ~~~-~~~~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~-------------~~----~i~~~Li~~g-a~~n~~~~ 217 (285)
T d1wdya_ 157 EKG-HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSD-------------VE----AITHLLLDHG-ADVNVRGE 217 (285)
T ss_dssp HHT-CHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTT-------------HH----HHHHHHHHTT-CCSSCCCT
T ss_pred HcC-CHHHHHHHHhccCCCcccccCCCCcccccccccccchH-------------HH----HHHHHHHHCC-CCCCccCC
Confidence 775 45788888888899999999999999888776654321 22 3455555555 44566788
Q ss_pred CCChHHHHHHhcCcHHHHHHHHHH-CCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhhcccC
Q 044420 237 KPSHLLFDAAELGNFEFLAELICS-YPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMATFKDH 307 (545)
Q Consensus 237 ~g~tpLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n~~d~ 307 (545)
.|.||||.|++.|+.+++++|++. |.+ ++.+|.+|+||||+|+++|+.+++++|+++|++ +|++|.
T Consensus 218 ~g~t~L~~a~~~~~~~~v~~lL~~~g~d-in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd----~n~~d~ 284 (285)
T d1wdya_ 218 RGKTPLILAVEKKHLGLVQRLLEQEHIE-INDTDSDGKTALLLAVELKLKKIAELLCKRGAS----TDCGDL 284 (285)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHSSSCC-TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSC----SCCSSC
T ss_pred CCCCccchhhhcCcHHHHHHHHHcCCCC-CcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CCcccC
Confidence 999999999999999999999986 667 999999999999999999999999999999999 677763
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=7.2e-36 Score=288.95 Aligned_cols=243 Identities=17% Similarity=0.120 Sum_probs=198.4
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 44 KGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 44 ~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
.++.||||.||+.|+.++|++|++ +|+++|.+|.+|.||||+|+..|+.++|++|+++|++. ...+..+.+||+.|+
T Consensus 38 ~~~~t~l~~A~~~G~~~~v~~Ll~--~Gadvn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~-~~~~~~~~~~L~~a~ 114 (291)
T d1s70b_ 38 FDDGAVFLAACSSGDTEEVLRLLE--RGADINYANVDGLTALHQACIDDNVDMVKFLVENGANI-NQPDNEGWIPLHAAA 114 (291)
T ss_dssp ECHHHHHHHHHHHTCHHHHHHHHH--HCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHH
T ss_pred CCCchHHHHHHHcCCHHHHHHHHH--CCCCCCccCCCCCcHHHHHHhcCCceeeeeeccccccc-ccccccccccccccc
Confidence 345699999999999999999999 79999999999999999999999999999999999986 788889999999999
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccc
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQG 203 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~ 203 (545)
..++.++++.|+++|......+..+.+++++|+..+. .+.+..++...+.++......+..+.+...
T Consensus 115 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~------------ 181 (291)
T d1s70b_ 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAM-EELLQNEVNRQGVDIEAARKEEERIMLRDA------------ 181 (291)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHH------------
T ss_pred cccccchhhcccccCcccccccccCcccccccccccc-chhccccccccccccccccccccccccccc------------
Confidence 9999999999999998877788888888888765544 356666666655544333322222222211
Q ss_pred hhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhC
Q 044420 204 LLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHR 283 (545)
Q Consensus 204 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~ 283 (545)
...+.... .+....+..|.||||.|+..|+.++++.|++.|++ ++.+|.+|+||||+|+..|
T Consensus 182 ----------------~~~~~~~~-~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A~~~g 243 (291)
T d1s70b_ 182 ----------------RQWLNSGH-INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWG 243 (291)
T ss_dssp ----------------HHHHHHTC-CCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHTT
T ss_pred ----------------hhhhcccc-cccccccCCCCChhhHHHHcCChhhhcccccceec-ccccccCCCCHHHHHHHcC
Confidence 11111111 22334557899999999999999999999999999 8999999999999999999
Q ss_pred chHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 284 HANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 284 ~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
+.++|++|+++|++ +|.+|++|+||||+|++ +++++|
T Consensus 244 ~~~iv~lLl~~Gad----v~~~d~~G~TaL~~A~e----~~~~~L 280 (291)
T d1s70b_ 244 KEEACRILVENLCD----MEAVNKVGQTAFDVADE----DILGYL 280 (291)
T ss_dssp CHHHHHHHHHTTCC----TTCCCTTSCCTTTSCCS----GGGHHH
T ss_pred CHHHHHHHHHCCCC----CCCcCCCCCCHHHHHHH----HHHHHH
Confidence 99999999999999 78899999999999975 466555
|
| >d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Transcription factor inhibitor I-kappa-B-beta, IKBB species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.3e-35 Score=279.67 Aligned_cols=231 Identities=17% Similarity=0.107 Sum_probs=175.2
Q ss_pred ccccCCCCcHHHHHHHhCCHHHHHHHHHcCcc--cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhH
Q 044420 75 TLQDRNGNTAFCFAVAAGSIHIAKIMLKKNER--LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNAL 152 (545)
Q Consensus 75 ~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l 152 (545)
+..|++|+||||+||+.|+.+++++|+++|++ ..+.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||+
T Consensus 3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tpL 82 (255)
T d1oy3d_ 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (255)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchhh
Confidence 34578999999999999999999999999865 2368899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHHHHhCCCcccccCC----------CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHH
Q 044420 153 FFTCISTDLHDLALKLLEDHSGLAVARDG----------NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEA 222 (545)
Q Consensus 153 ~~aa~~~~~~~~~~~lL~~~~~~~~~~d~----------~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 222 (545)
|+|+..+.. +.+ +++.+.......... .+.+....+..... .........
T Consensus 83 ~~A~~~~~~-~~~-~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~ 142 (255)
T d1oy3d_ 83 HLACRVRAH-TCA-CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ------------------PNPENEEEP 142 (255)
T ss_dssp HHHTTTTCH-HHH-HHHSSSCCSSCCCC----------------------------------------------------
T ss_pred hhhhccCch-HHH-HHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhh------------------cchhHHHHH
Confidence 999877653 444 444443322111100 00011011000000 000001111
Q ss_pred HhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhh
Q 044420 223 ILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMA 302 (545)
Q Consensus 223 l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~ 302 (545)
.........+.++.+|.||||+|++.|+.+++++|++.+++.....+..|.||||+|++.++.+++++|+++|++ +
T Consensus 143 ~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gad----i 218 (255)
T d1oy3d_ 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGAD----P 218 (255)
T ss_dssp -CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC----T
T ss_pred HhhhcCcccccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCC----C
Confidence 112222556678899999999999999999999999999996556788999999999999999999999999998 7
Q ss_pred hcccCCCCChhhhhccCCCCCcccccc
Q 044420 303 TFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 303 n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
|.+|++|+||||+|+..++.+++++|.
T Consensus 219 n~~d~~g~t~L~~A~~~~~~~i~~~Ll 245 (255)
T d1oy3d_ 219 TARMYGGRTPLGSALLRPNPILARLLR 245 (255)
T ss_dssp TCCCTTSCCHHHHHHTSSCHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 889999999999999999999998884
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.5e-34 Score=269.35 Aligned_cols=126 Identities=21% Similarity=0.305 Sum_probs=83.1
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccc---cccCCCCcHHH
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLT---LQDRNGNTAFC 86 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~---~~d~~g~TpLh 86 (545)
++|||+||+.|+.+.|+.|++ ..+ ..++ .+|.+|+||||+|+..|+.+++++|++ +|++++ ..|..|.||+|
T Consensus 1 n~pLh~A~~~g~~~~v~~Ll~-~~~-~~~~-~~d~~G~TpL~~A~~~g~~~iv~~Ll~--~ga~~~~~~~~~~~~~~~~~ 75 (229)
T d1ixva_ 1 NYPLHQACMENEFFKVQELLH-SKP-SLLL-QKDQDGRIPLHWSVSFQAHEITSFLLS--KMENVNLDDYPDDSGWTPFH 75 (229)
T ss_dssp CCHHHHHHHHTCHHHHHHHHH-HCG-GGTT-CCCTTSCCHHHHHHHTTCHHHHHHHHT--TCTTCCGGGCCCTTSCCHHH
T ss_pred CHhHHHHHHcCCHHHHHHHHH-cCC-Cccc-ccCCCCCCHHHHHHHcCCccccchhhh--hhcccccccccccccccccc
Confidence 367777777777777777776 344 4443 666777777777777777777777776 566654 34455667777
Q ss_pred HHHHhCCHHHHHHHHHcCccc-ccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 87 FAVAAGSIHIAKIMLKKNERL-LTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 87 ~A~~~g~~~iv~~Ll~~~~~~-~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+++..+..++++.++..+... ....+..+.||++.++..++.+++++|++.+.+
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~ 130 (229)
T d1ixva_ 76 IACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS 130 (229)
T ss_dssp HHHHHTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 777777777777777666532 134556667777777777777777777666654
|
| >d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.5e-34 Score=265.44 Aligned_cols=219 Identities=19% Similarity=0.175 Sum_probs=177.5
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCccc--ccCCCCCCCcHHHHHHH
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERL--LTMRGGENMTPLYMAAV 124 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~ 124 (545)
+||||+||+.|+.++++.|++. .+.+++.+|.+|+||||+|+..|+.+++++|+++|+++ ....+..|.+|+|+|+.
T Consensus 1 n~pLh~A~~~g~~~~v~~Ll~~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~ 79 (229)
T d1ixva_ 1 NYPLHQACMENEFFKVQELLHS-KPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 79 (229)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHH-CGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CHhHHHHHHcCCHHHHHHHHHc-CCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence 5899999999999999999986 68899999999999999999999999999999999875 24678889999999999
Q ss_pred cCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccch
Q 044420 125 LAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGL 204 (545)
Q Consensus 125 ~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 204 (545)
.+..++++.++..+... .....+..+.||++.++..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~~~l~~~~~~~~~-------- 118 (229)
T d1ixva_ 80 VGNLEVVKSLYDRPLKP---------------------------------DLNKITNQGVTCLHLAVGKKWF-------- 118 (229)
T ss_dssp HTCHHHHHHHHSSSSCC---------------------------------CTTCCCTTSCCHHHHHHHTTCH--------
T ss_pred ccccccccccccccccc---------------------------------cccccccccccccccccccchh--------
Confidence 99999999999887642 1234556667777777776643
Q ss_pred hhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCc
Q 044420 205 LTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRH 284 (545)
Q Consensus 205 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~ 284 (545)
+++ +.++..+ ......+..|+||||+|+..|+.+++++|++.+++.++.+|.+|+||||+|+.+|+
T Consensus 119 ---------~~~----~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~ 184 (229)
T d1ixva_ 119 ---------EVS----QFLIENG-ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGH 184 (229)
T ss_dssp ---------HHH----HHHHHTT-CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTC
T ss_pred ---------hhh----hhhhhhc-ccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhccccc
Confidence 222 3333333 23344567788999999999999999999998876688899999999999999999
Q ss_pred hHHHHHHHh-hccchhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 285 ANIFNLIYE-IGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 285 ~~iv~~Ll~-~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
.+++++|++ .|++ ++.+|.+|+||||+|+.. +++++|
T Consensus 185 ~~~v~~Ll~~~gad----~~~~d~~g~t~l~~A~~~---~~~~~L 222 (229)
T d1ixva_ 185 GDAAVLLVEKYGAE----YDLVDNKGAKAEDVALNE---QVKKFF 222 (229)
T ss_dssp HHHHHHHHHHHCCC----SCCCCTTSCCTGGGCSCH---HHHHHH
T ss_pred HHHHHHHHHhcCCC----CCCcCCCCCCHHHHHhhH---HHHHHH
Confidence 999999986 4888 778999999999998854 455554
|
| >d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: RNase L, 2-5a-dependent ribonuclease species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.6e-34 Score=273.93 Aligned_cols=265 Identities=15% Similarity=0.132 Sum_probs=222.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc-CCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD-RNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d-~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~ 123 (545)
+++|+||.|++.|+.++|++|++ +|+++|.++ ..|.||||+|+..|+.+++++|++.+... ...+..+.+|.+.|+
T Consensus 4 ~~~~~L~~Ai~~~~~e~vk~Ll~--~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~-~~~~~~~~~~~~~~~ 80 (285)
T d1wdya_ 4 EDNHLLIKAVQNEDVDLVQQLLE--GGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP-VLRKKNGATPFLLAA 80 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHH
T ss_pred CCcHHHHHHHHcCCHHHHHHHHH--CCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc-cccccccchhhHHHh
Confidence 36799999999999999999999 899999776 46999999999999999999999999986 788889999999999
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcc----------cccCCCCchHHHHHHhC
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLA----------VARDGNYETALHVLARK 193 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~----------~~~d~~g~tpLh~A~~~ 193 (545)
..+..+...+.++...+....+..+.++++.++..+.. ..+...+... .+. ...+..|.||||+|++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~ 158 (285)
T d1wdya_ 81 IAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKV-KALKFLYKRG-ANVNLRRKTKEDQERLRKGGATALMDAAEK 158 (285)
T ss_dssp HHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCH-HHHHHHHHTT-CCTTCCCCCCHHHHHTTCCCCCHHHHHHHH
T ss_pred hcCCccccchhhhhcccccccccCCCchhHHHHHhcch-hhhhhhhhhc-ccccccccchhhhhhhcccCchHHHHHHHc
Confidence 99999999999999887677788889999999887654 3444444332 222 24467799999999999
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhc----CcHHHHHHHHHHCCCcccccc
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAEL----GNFEFLAELICSYPDLVHELD 269 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~----g~~~~v~~Ll~~~~~~~~~~d 269 (545)
|+. ++ ++.+++....+++..+..|.++++.+... +..+++++|+++|++ ++.+|
T Consensus 159 ~~~-----------------~~----~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~-~n~~~ 216 (285)
T d1wdya_ 159 GHV-----------------EV----LKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD-VNVRG 216 (285)
T ss_dssp TCH-----------------HH----HHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC-SSCCC
T ss_pred CCH-----------------HH----HHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC-CCccC
Confidence 965 33 44555444466777788888888776543 456799999999999 89999
Q ss_pred cCCCcHHHHHHHhCchHHHHHHHhh-ccchhhhhhcccCCCCChhhhhccCCCCCccccccchhHHhHHHHhHHHHHhhh
Q 044420 270 DNNRSIFHIAVLHRHANIFNLIYEI-GFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVSGAALQMHRELLWFKEVEKI 348 (545)
Q Consensus 270 ~~G~t~Lh~A~~~~~~~iv~~Ll~~-g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~~~~~~~~l~~~~~v~~l 348 (545)
..|.||||+|+..|+.+++++|++. |.+ +|.+|.+|+||||+|+++|+.+++++|.+.
T Consensus 217 ~~g~t~L~~a~~~~~~~~v~~lL~~~g~d----in~~d~~G~TpL~~A~~~~~~eiv~~Ll~~----------------- 275 (285)
T d1wdya_ 217 ERGKTPLILAVEKKHLGLVQRLLEQEHIE----INDTDSDGKTALLLAVELKLKKIAELLCKR----------------- 275 (285)
T ss_dssp TTSCCHHHHHHHTTCHHHHHHHHHSSSCC----TTCCCTTSCCHHHHHHHTTCHHHHHHHHHH-----------------
T ss_pred CCCCCccchhhhcCcHHHHHHHHHcCCCC----CcCCCCCCCCHHHHHHHcCCHHHHHHHHHC-----------------
Confidence 9999999999999999999999985 777 889999999999999999999999888533
Q ss_pred hcCccccccCC
Q 044420 349 VQPTFREMKNS 359 (545)
Q Consensus 349 ~~~~~~~~~n~ 359 (545)
|+++|.+|.
T Consensus 276 --GAd~n~~d~ 284 (285)
T d1wdya_ 276 --GASTDCGDL 284 (285)
T ss_dssp --SSCSCCSSC
T ss_pred --CCCCCcccC
Confidence 888898874
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.7e-32 Score=253.25 Aligned_cols=224 Identities=17% Similarity=0.107 Sum_probs=180.9
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHc--CCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKL--MKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~--~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
+|+||||+||+.|+.++++.|++. ..|++++.+|.+|+||||+|+..|+.++++.|+++|++. +..+..|.++++.|
T Consensus 2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~-~~~~~~~~~~~~~a 80 (228)
T d1k1aa_ 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASP-MALDRHGQTAAHLA 80 (228)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhcccccccccccccccccc-cccccccccccccc
Confidence 699999999999999999988752 168899999999999999999999999999999999986 78889999999999
Q ss_pred HHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccccc
Q 044420 123 AVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQ 202 (545)
Q Consensus 123 ~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~ 202 (545)
...++.++++.+........ ...+.....+.++|+.+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~~~~l~~~~~~~~~~----- 124 (228)
T d1k1aa_ 81 CEHRSPTCLRALLDSAAPGT-------------------------------LDLEARNYDGLTALHVAVNTECQE----- 124 (228)
T ss_dssp HHTTCHHHHHHHHHHSCTTS-------------------------------CCTTCCCTTSCCHHHHHHHHTCHH-----
T ss_pred cccccccchhhhhhcccccc-------------------------------ccccccccccccccccccccccch-----
Confidence 99999999888876654311 112234455566776666544321
Q ss_pred chhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHh
Q 044420 203 GLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLH 282 (545)
Q Consensus 203 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~ 282 (545)
..+.+..............|.+||+.|+..+..++++.+++.+.+ .+.+|..|+||||+|+.+
T Consensus 125 ----------------~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~-~~~~d~~g~t~L~~A~~~ 187 (228)
T d1k1aa_ 125 ----------------TVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN-VNAQMYSGSSALHSASGR 187 (228)
T ss_dssp ----------------HHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHHH
T ss_pred ----------------hhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc-cccccccCcchHHHHHHc
Confidence 122222222222333456789999999999999999999999998 889999999999999999
Q ss_pred CchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCccc
Q 044420 283 RHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVS 326 (545)
Q Consensus 283 ~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~ 326 (545)
|+.+++++|+++|++ +|.+|.+|+||||+|+++|+.++++
T Consensus 188 g~~~~v~~Ll~~Gad----~n~~d~~G~TpL~~A~~~~~~divk 227 (228)
T d1k1aa_ 188 GLLPLVRTLVRSGAD----SSLKNCHNDTPLMVARSRRVIDILR 227 (228)
T ss_dssp TCHHHHHHHHHTTCC----TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred CCHHHHHHHHHCCCC----CCCCCCCCCCHHHHHHhCCCccccC
Confidence 999999999999999 7889999999999999998776653
|
| >d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myosin phosphatase targeting subunit 1, MYPT1 species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=1.4e-33 Score=272.73 Aligned_cols=248 Identities=18% Similarity=0.140 Sum_probs=205.2
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
..++.|+|+.||..|+.++|++||+ .| .+++ ..|.+|.||||+|+..|+.++|++|++ ++.+.+..+..+.|||
T Consensus 37 ~~~~~t~l~~A~~~G~~~~v~~Ll~--~G-advn-~~d~~G~T~L~~A~~~g~~eiv~~Ll~--~~~~~~~~~~~~~~~L 110 (291)
T d1s70b_ 37 KFDDGAVFLAACSSGDTEEVLRLLE--RG-ADIN-YANVDGLTALHQACIDDNVDMVKFLVE--NGANINQPDNEGWIPL 110 (291)
T ss_dssp EECHHHHHHHHHHHTCHHHHHHHHH--HC-CCTT-CBCTTCCBHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHH
T ss_pred CCCCchHHHHHHHcCCHHHHHHHHH--CC-CCCC-ccCCCCCcHHHHHHhcCCceeeeeecc--cccccccccccccccc
Confidence 4556799999999999999999999 67 7776 789999999999999999999999999 7999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC-CccCCCCChhhHHHHHHhcCcHHH
Q 044420 86 CFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA-KDNLTPEDQNALFFTCISTDLHDL 164 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~-~~~~~~~~~t~l~~aa~~~~~~~~ 164 (545)
|.|+..|+.++++.|+++|+.. +..|.+|.+|+++|+..++.+.++.++..... ..........+. ...
T Consensus 111 ~~a~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~---------~~~ 180 (291)
T d1s70b_ 111 HAAASCGYLDIAEYLISQGAHV-GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIM---------LRD 180 (291)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHH---------HHH
T ss_pred cccccccccchhhcccccCccc-ccccccCccccccccccccchhccccccccccccccccccccccc---------ccc
Confidence 9999999999999999999986 78999999999999999999999999965432 111010000111 122
Q ss_pred HHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHH
Q 044420 165 ALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFD 244 (545)
Q Consensus 165 ~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~ 244 (545)
....+.....+....+..|.||||.|+..|+. + +++.+++.+ .+++.++.+|.||||+
T Consensus 181 ~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~-----------------~----~~~~Ll~~g-~din~~~~~g~TpL~~ 238 (291)
T d1s70b_ 181 ARQWLNSGHINDVRHAKSGGTALHVAAAKGYT-----------------E----VLKLLIQAR-YDVNIKDYDGWTPLHA 238 (291)
T ss_dssp HHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCH-----------------H----HHHHHHTTT-CCTTCCCTTCCCHHHH
T ss_pred chhhhcccccccccccCCCCChhhHHHHcCCh-----------------h----hhcccccce-ecccccccCCCCHHHH
Confidence 33444555566677889999999999999965 2 355566665 5567788999999999
Q ss_pred HHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhcc
Q 044420 245 AAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGF 296 (545)
Q Consensus 245 A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~ 296 (545)
|++.|+.++|++|+++|++ ++.+|.+|+||||+|++ +++++|.+...
T Consensus 239 A~~~g~~~iv~lLl~~Gad-v~~~d~~G~TaL~~A~e----~~~~~L~~~~~ 285 (291)
T d1s70b_ 239 AAHWGKEEACRILVENLCD-MEAVNKVGQTAFDVADE----DILGYLEELQK 285 (291)
T ss_dssp HHHTTCHHHHHHHHHTTCC-TTCCCTTSCCTTTSCCS----GGGHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH----HHHHHHHHHhh
Confidence 9999999999999999999 89999999999999975 67777776544
|
| >d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Lin-12 species: Caenorhabditis elegans [TaxId: 6239]
Probab=100.00 E-value=9.6e-33 Score=264.57 Aligned_cols=236 Identities=20% Similarity=0.155 Sum_probs=189.7
Q ss_pred cccCCHHhHHHHHcCChHHHHHhhcC------CCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccC
Q 044420 6 YLNICVPLQKAALKGNWPTAKHLLGN------EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDR 79 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~Ll~~------~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~ 79 (545)
..+|+||||+||..|+.++|+.|+.. ..| ++++ .+|.+|+||||+|++.|+.++|++|++ +|++++.+|.
T Consensus 30 ~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G-advn-~~d~~G~TpLh~A~~~g~~~iv~~Ll~--~Gad~n~~~~ 105 (277)
T d2fo1e1 30 PRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-ADVN-AMDCDENTPLMLAVLARRRRLVAYLMK--AGADPTIYNK 105 (277)
T ss_dssp CSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-CCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHH--TTCCSCCCCT
T ss_pred CCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcC-CCcc-ccCCCCCeeeccccccccccccccccc--cccccccccc
Confidence 34699999999999999999988651 134 5565 789999999999999999999999999 8999999999
Q ss_pred CCCcHHHHHHHhCCHHHHHHHHHcCcc--cccCCCCCCCcHHHHHHHcCCHH---HHHHHHHcccCCccCCCCChhhHHH
Q 044420 80 NGNTAFCFAVAAGSIHIAKIMLKKNER--LLTMRGGENMTPLYMAAVLAQRD---MALYLYDDAKAKDNLTPEDQNALFF 154 (545)
Q Consensus 80 ~g~TpLh~A~~~g~~~iv~~Ll~~~~~--~~~~~~~~g~tpL~~A~~~g~~~---iv~~Ll~~~~~~~~~~~~~~t~l~~ 154 (545)
+|.||||+|+..++.++++.+...+.. ..+..+..+.++.+.+...+..+ .+..+.+.......
T Consensus 106 ~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 174 (277)
T d2fo1e1 106 SERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDY----------- 174 (277)
T ss_dssp TCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSC-----------
T ss_pred cccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccc-----------
Confidence 999999999999999999999876532 22567888999999999877654 33333333321000
Q ss_pred HHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhh
Q 044420 155 TCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDL 234 (545)
Q Consensus 155 aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ 234 (545)
......+..+..|.||||.++..++.+ . .+.++.....+...+
T Consensus 175 ----------------~~~~~~~~~~~~g~t~L~~~~~~~~~~-----------------~----~~~~l~~~~~~~~~~ 217 (277)
T d2fo1e1 175 ----------------DGAARKDSEKYKGRTALHYAAQVSNMP-----------------I----VKYLVGEKGSNKDKQ 217 (277)
T ss_dssp ----------------CSGGGTSSSSCCCCCTHHHHHSSCCHH-----------------H----HHHHHHHSCCCTTCC
T ss_pred ----------------cccccccccccCCCCcccccccccccc-----------------c----ccccccccccccccc
Confidence 011223567888999999999998653 2 233333333556677
Q ss_pred ccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 235 IRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 235 ~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
|..|.||||+|++.|+.+++++|+++|++ ++.+|.+|+||||+|+++|+.+++++|++.
T Consensus 218 d~~g~tpL~~A~~~g~~~iv~~Ll~~gad-in~~d~~G~T~L~~A~~~~~~~iv~lL~~c 276 (277)
T d2fo1e1 218 DEDGKTPIMLAAQEGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIFDRC 276 (277)
T ss_dssp CTTCCCHHHHHHHHTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHCcCC-CCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence 89999999999999999999999999999 999999999999999999999999999864
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.6e-32 Score=254.16 Aligned_cols=194 Identities=17% Similarity=0.133 Sum_probs=159.3
Q ss_pred CCCcHHHHHHHcCCHHH----HHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHH
Q 044420 45 GYETLLHLAAGARQTGF----VEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLY 120 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~----v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 120 (545)
+|+||||+|+..|+.++ ++.+.. .++++|.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|..|.||||
T Consensus 1 dG~t~Lh~A~~~g~~~~~~~li~~~~~--~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~-~~~d~~g~t~l~ 77 (221)
T d1iknd_ 1 DGDSFLHLAIIHEEKALTMEVIRQVKG--DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDP-ELRDFRGNTPLH 77 (221)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-------CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCS-CCCCTTCCCHHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHHHHh--CCCCcccCCCCCCccccccccccccccccccccccccc-cccccccccccc
Confidence 58999999999998654 445555 68899999999999999999999999999999999997 889999999999
Q ss_pred HHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCcccc
Q 044420 121 MAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASR 200 (545)
Q Consensus 121 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~ 200 (545)
.|+..|+.++++.|++.+.+....
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~~~~-------------------------------------------------------- 101 (221)
T d1iknd_ 78 LACEQGCLASVGVLTQSCTTPHLH-------------------------------------------------------- 101 (221)
T ss_dssp HHHHHTCHHHHHHHHHSTTTTSSS--------------------------------------------------------
T ss_pred cccccccccccchhhhhccccccc--------------------------------------------------------
Confidence 999999999999999887641100
Q ss_pred ccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHH
Q 044420 201 NQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAV 280 (545)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~ 280 (545)
.........|.||||.|+..|+.++++++++.+++.....+.+|+||||+|+
T Consensus 102 ----------------------------~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~ 153 (221)
T d1iknd_ 102 ----------------------------SILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAV 153 (221)
T ss_dssp ----------------------------CGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred ----------------------------ccccccccccchhhhHHhhcCChhheeeecccCcccccccccCCCCcccccc
Confidence 0011122557889999999999999999999998843444567999999999
Q ss_pred HhCchHHHHHHHhhccchhhhhhcccCCCCChhhhhccCCCCCcccccc
Q 044420 281 LHRHANIFNLIYEIGFTKELMATFKDHDQNNMLHLAAKSPHPSRVSIVS 329 (545)
Q Consensus 281 ~~~~~~iv~~Ll~~g~~~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L~ 329 (545)
+.|+.+++++|+++|++ +|.+|.+|+||||+|++.++.++++.|.
T Consensus 154 ~~g~~~~v~~Ll~~gad----~~~~~~~G~tpl~~A~~~~~~~~~~~l~ 198 (221)
T d1iknd_ 154 DLQNPDLVSLLLKCGAD----VNRVTYQGYSPYQLTWGRPSTRIQQQLG 198 (221)
T ss_dssp HTTCHHHHHHHHTTTCC----SCCCCTTCCCGGGGCTTSSCHHHHHHHH
T ss_pred ccccHHHHHHHHhcCCc----ccccCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 99999999999999998 7889999999999999999888887764
|
| >d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: I-kappa-B-alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=2.3e-31 Score=246.21 Aligned_cols=196 Identities=18% Similarity=0.130 Sum_probs=171.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcC--CCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGN--EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+|+||||+|+..|+.++++.+++. .++ .+++ ..|.+|+||||+|+..|+.+++++|++ .|++++.+|..|.|||
T Consensus 1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~-~~in-~~d~~g~TpLh~A~~~~~~~iv~~L~~--~g~d~~~~d~~g~t~l 76 (221)
T d1iknd_ 1 DGDSFLHLAIIHEEKALTMEVIRQVKGDL-AFLN-FQNNLQQTPLHLAVITNQPEIAEALLG--AGCDPELRDFRGNTPL 76 (221)
T ss_dssp CCCCTTHHHHHTTCSSSSSCCCC-----C-CCCC-CCCTTCCCHHHHHHHTTCHHHHHCCCS--CCCCSCCCCTTCCCHH
T ss_pred CCChHHHHHHHcCCHHHHHHHHHHHHhCC-CCcc-cCCCCCCcccccccccccccccccccc--cccccccccccccccc
Confidence 699999999999998888777761 134 4555 789999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcc-----cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 86 CFAVAAGSIHIAKIMLKKNER-----LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
|+|+..|+.++++.|++.+.. .......+|.||||.|+..++.+++++|++.|+.++..
T Consensus 77 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~---------------- 140 (221)
T d1iknd_ 77 HLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQ---------------- 140 (221)
T ss_dssp HHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCC----------------
T ss_pred ccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCcccccc----------------
Confidence 999999999999999997643 23456677999999999999999999999988752111
Q ss_pred cHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCCh
Q 044420 161 LHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSH 240 (545)
Q Consensus 161 ~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~t 240 (545)
.+.+|.|
T Consensus 141 -------------------------------------------------------------------------~~~~G~T 147 (221)
T d1iknd_ 141 -------------------------------------------------------------------------EPCNGRT 147 (221)
T ss_dssp -------------------------------------------------------------------------CTTTCCC
T ss_pred -------------------------------------------------------------------------cccCCCC
Confidence 1145789
Q ss_pred HHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 241 LLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 241 pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
|||+|++.|+.+++++|+++|+| ++.+|.+|+||||+|+..++.+++++|++.+.+
T Consensus 148 ~L~~A~~~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~ 203 (221)
T d1iknd_ 148 ALHLAVDLQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE 203 (221)
T ss_dssp HHHHHHHTTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred ccccccccccHHHHHHHHhcCCc-ccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence 99999999999999999999999 999999999999999999999999999998765
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.97 E-value=5e-30 Score=234.79 Aligned_cols=206 Identities=17% Similarity=0.165 Sum_probs=130.1
Q ss_pred HHHHHHHHHcCCCccccc-ccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHc
Q 044420 59 TGFVEELLKLMKPEDLTL-QDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDD 137 (545)
Q Consensus 59 ~~~v~~Ll~~~~~~~~~~-~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~ 137 (545)
.|+|++|++ +|++++. .|.+|+||||+||..|+.+++++|++.|+++ +.++..+.+|++.++..++.+........
T Consensus 2 ~~~v~~Ll~--~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~-n~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (209)
T d1ot8a_ 2 AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADA-NSQDNTGRTPLHAAVAADAMGVFQILLRN 78 (209)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC
T ss_pred HHHHHHHHH--CCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccc-ccccccccccccccccccccccccccccc
Confidence 467777777 5777765 4677777777777777777777777777775 66777777777777777777666655554
Q ss_pred ccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHH
Q 044420 138 AKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVK 217 (545)
Q Consensus 138 ~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (545)
........ ...|.++.+.+.......
T Consensus 79 ~~~~~~~~----------------------------------~~~~~~~~~~~~~~~~~~-------------------- 104 (209)
T d1ot8a_ 79 RATNLNAR----------------------------------MHDGTTPLILAARLAIEG-------------------- 104 (209)
T ss_dssp TTCCTTCC----------------------------------CTTCCCHHHHHHHTTCTT--------------------
T ss_pred cccccccc----------------------------------cccccccccccccccchh--------------------
Confidence 44211111 112222222222222111
Q ss_pred HHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccc
Q 044420 218 SLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFT 297 (545)
Q Consensus 218 ~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~ 297 (545)
..+.+...+ .++...+..|.|||+.++..|..++++.+++.+.+ ++.+|.+|.||||+|+.+|+.+++++|+++|++
T Consensus 105 -~~~~L~~~~-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad 181 (209)
T d1ot8a_ 105 -MVEDLITAD-ADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN-RDAQDDKDETPLFLAAREGSYEASKALLDNFAN 181 (209)
T ss_dssp -HHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred -hhhhhhhhc-ccccccCCCCCCcchhhcccCcceeeeeecccccc-ccccccccccccchhccccHHHHHHHHHHCCCC
Confidence 011111111 22233345566677777777777777777777777 677777777888888877788888877777777
Q ss_pred hhhhhhcccCCCCChhhhhccCCCCCccccc
Q 044420 298 KELMATFKDHDQNNMLHLAAKSPHPSRVSIV 328 (545)
Q Consensus 298 ~~~~~n~~d~~G~TpLh~A~~~~~~~~~~~L 328 (545)
+|.+|.+|+||||+|++.|+.+++++|
T Consensus 182 ----~n~~d~~g~Tpl~~A~~~~~~~iv~lL 208 (209)
T d1ot8a_ 182 ----REITDHMDRLPRDVASERLHHDIVRLL 208 (209)
T ss_dssp ----TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred ----CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence 566777777888888877777777654
|
| >d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: bcl-3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=1.1e-29 Score=234.22 Aligned_cols=221 Identities=19% Similarity=0.169 Sum_probs=182.0
Q ss_pred cCCHHhHHHHHcCChHHHHHhhcC--CCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHH
Q 044420 8 NICVPLQKAALKGNWPTAKHLLGN--EDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAF 85 (545)
Q Consensus 8 ~~~t~L~~Aa~~g~~~~v~~Ll~~--~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpL 85 (545)
+|+||||+||+.|+.++++.|++. +.+ .+++ ..|.+|+||||+|+..|+.+++++|++ .+++.+..+..|.+++
T Consensus 2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g-~~in-~~d~~g~TpL~~A~~~~~~~iv~~Ll~--~ga~~~~~~~~~~~~~ 77 (228)
T d1k1aa_ 2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGG-RELD-IYNNLRQTPLHLAVITTLPSVVRLLVT--AGASPMALDRHGQTAA 77 (228)
T ss_dssp TTCCHHHHHHHTTCHHHHHHHHHHHHHTT-CCSC-CCCTTSCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHCC-CCCC-ccCCCCCccceehhccccccccccccc--cccccccccccccccc
Confidence 699999999999999999999851 144 4554 788999999999999999999999999 8999999999999999
Q ss_pred HHHHHhCCHHHHHHHHHcCcc---cccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcH
Q 044420 86 CFAVAAGSIHIAKIMLKKNER---LLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLH 162 (545)
Q Consensus 86 h~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~ 162 (545)
+.|...++.++++.+...... ..+.......+||+.+.........+.|.....+.
T Consensus 78 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~--------------------- 136 (228)
T d1k1aa_ 78 HLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI--------------------- 136 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT---------------------
T ss_pred ccccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhcccccc---------------------
Confidence 999999999999988876432 22456677889999999999998888888766541
Q ss_pred HHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHH
Q 044420 163 DLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLL 242 (545)
Q Consensus 163 ~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpL 242 (545)
....+..|.+||+.|+..+.. .+ .+.+++.+ ......|..|.|||
T Consensus 137 -------------~~~~~~~~~~~l~~a~~~~~~-----------------~~----~~~~~~~~-~~~~~~d~~g~t~L 181 (228)
T d1k1aa_ 137 -------------DAVDIKSGRSPLIHAVENNSL-----------------SM----VQLLLQHG-ANVNAQMYSGSSAL 181 (228)
T ss_dssp -------------TCCCTTTCCCHHHHHHHTTCH-----------------HH----HHHHHHTT-CCTTCBCTTSCBHH
T ss_pred -------------ccccccchhhHHHHHHHhhhh-----------------hh----hhhhhhhc-cccccccccCcchH
Confidence 123455677778887777643 22 33333343 44556678899999
Q ss_pred HHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHHH
Q 044420 243 FDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIFN 289 (545)
Q Consensus 243 h~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~ 289 (545)
|+|+..|+.+++++|+++|+| ++.+|.+|+||||+|+++|+.|+||
T Consensus 182 ~~A~~~g~~~~v~~Ll~~Gad-~n~~d~~G~TpL~~A~~~~~~divk 227 (228)
T d1k1aa_ 182 HSASGRGLLPLVRTLVRSGAD-SSLKNCHNDTPLMVARSRRVIDILR 227 (228)
T ss_dssp HHHHHHTCHHHHHHHHHTTCC-TTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred HHHHHcCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHhCCCccccC
Confidence 999999999999999999999 9999999999999999999999885
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.96 E-value=1.2e-30 Score=257.64 Aligned_cols=235 Identities=11% Similarity=0.020 Sum_probs=159.5
Q ss_pred cccCCHHhHHHHHcCChHHHHH---hhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccccc--CC
Q 044420 6 YLNICVPLQKAALKGNWPTAKH---LLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQD--RN 80 (545)
Q Consensus 6 ~~~~~t~L~~Aa~~g~~~~v~~---Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d--~~ 80 (545)
+.+|.||||+||++|+.+++++ |++ .+ .+++ .+|.+|+||||+||++||.++|++|++ .|++++..+ .+
T Consensus 87 ~~~~~t~L~~Aa~~g~~~~~~~~~~L~~--~~-~~in-~~~~~g~taL~~Aa~~G~~~~v~~Ll~--~g~~~~~~~~~~~ 160 (346)
T d2ajaa1 87 GIKSEVICFVAAITGCSSALDTLCLLLT--SD-EIVK-VIQAENYQAFRLAAENGHLHVLNRLCE--LAPTEIMAMIQAE 160 (346)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC----CC-SSCC---CHHHHHHHHHHHHTTCHHHHHHHHH--SCTTTHHHHHSHH
T ss_pred cCCCCcHHHHHHHhCCHHHHHHHHHHHh--CC-Cccc-ccCCCCCCHHHHHHHCCCHHHHHHHHH--cCCCccccccccC
Confidence 3468899999999999877765 455 55 5555 678889999999999999999999998 788888766 45
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCcccc--cCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccC-------CCCChhh
Q 044420 81 GNTAFCFAVAAGSIHIAKIMLKKNERLL--TMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNL-------TPEDQNA 151 (545)
Q Consensus 81 g~TpLh~A~~~g~~~iv~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~-------~~~~~t~ 151 (545)
|+||||+|+.+||.++|++|++.|++.. +..+.+|.||+|.|+++|+.+++++|+++|++++.. ...+.++
T Consensus 161 g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 240 (346)
T d2ajaa1 161 NYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 240 (346)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHH
T ss_pred CCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhH
Confidence 8899999999999999999999887532 344556778888888999999999999888763221 1111222
Q ss_pred HHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhh
Q 044420 152 LFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEF 231 (545)
Q Consensus 152 l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 231 (545)
++.++... ...+.++++.+...+..+.. ....
T Consensus 241 ~~~~~~~~--------------------~~~~~~~l~~a~~~~~~~~~----------------------------~~~~ 272 (346)
T d2ajaa1 241 FIARHVNR--------------------LKEMHDAFKLSNPDGVFDLV----------------------------TKSE 272 (346)
T ss_dssp HHHHHHHH--------------------HHHHHTTTTTTSSSSCCCCS----------------------------SHHH
T ss_pred HHHHhhcc--------------------chHHHHHHHHhcccccHhHH----------------------------hccc
Confidence 22222110 00112233333333322110 0011
Q ss_pred hhhccCCChHHHHHHhcCcHHHHHHHHHHCCCc----ccccccCCCcHHHHHHHhCchHHHHHHHhh
Q 044420 232 TDLIRKPSHLLFDAAELGNFEFLAELICSYPDL----VHELDDNNRSIFHIAVLHRHANIFNLIYEI 294 (545)
Q Consensus 232 ~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~----~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~ 294 (545)
......+.++++.|+..|+.+++++|++.+... .+..+.+|+||||+||+.|+.++|++|++.
T Consensus 273 ~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~ 339 (346)
T d2ajaa1 273 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339 (346)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred ccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence 111123468899999999999999999876541 233456789999999999999999999975
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=1.8e-27 Score=206.92 Aligned_cols=154 Identities=18% Similarity=0.129 Sum_probs=133.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
+|||+||..|+.++|+.|++ +|++++.+|.+|.||||+|+ .|+.+++++|+++|+++ +.++.+|.+|++.++..++
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~--~g~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~-~~~~~~~~~~l~~~~~~~~ 78 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQ--NNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGANP-DLKDRTGFAVIHDAARAGF 78 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTT--SCCCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--CCCCcCccCCcccccccccc-ccccccccccccccccc-ccccccCcccccccccccc
Confidence 78999999999999999999 79999999999999999876 78999999999999986 8889999999999999999
Q ss_pred HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH
Q 044420 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR 207 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 207 (545)
.+.++.|++.+.+++
T Consensus 79 ~~~~~~l~~~~~~~~----------------------------------------------------------------- 93 (156)
T d1ihba_ 79 LDTLQTLLEFQADVN----------------------------------------------------------------- 93 (156)
T ss_dssp HHHHHHHHHTTCCTT-----------------------------------------------------------------
T ss_pred ccccccccccccccc-----------------------------------------------------------------
Confidence 999999888765411
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHH
Q 044420 208 LMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287 (545)
Q Consensus 208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i 287 (545)
..+..|.+|||+|++.|+.+++++|+++++...+.+|.+|+||||+|+++++.++
T Consensus 94 -------------------------~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~i 148 (156)
T d1ihba_ 94 -------------------------IEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEV 148 (156)
T ss_dssp -------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -------------------------ccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHH
Confidence 1125567888888888889999999999885588899999999999999999999
Q ss_pred HHHHHhhc
Q 044420 288 FNLIYEIG 295 (545)
Q Consensus 288 v~~Ll~~g 295 (545)
+++|+++|
T Consensus 149 v~~Ll~~G 156 (156)
T d1ihba_ 149 VSLMQANG 156 (156)
T ss_dssp HHHHHHTC
T ss_pred HHHHHhcC
Confidence 99999876
|
| >d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Pseudo ankyrin repeat-like family: Pseudo ankyrin repeat domain: Hypothetical protein LPG2416 species: Legionella pneumophila [TaxId: 446]
Probab=99.95 E-value=7.8e-30 Score=251.84 Aligned_cols=239 Identities=15% Similarity=0.077 Sum_probs=166.2
Q ss_pred ccCCCCCcHHHHHHHcCCHHHHHH---HHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCC--CCC
Q 044420 41 GIAKGYETLLHLAAGARQTGFVEE---LLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRG--GEN 115 (545)
Q Consensus 41 ~~~~~g~T~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~--~~g 115 (545)
.++..|.||||+||++||.+++++ |++ .|++++.+|.+|.||||+||++||.++|++|+++|+++ +..+ .+|
T Consensus 85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~--~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~-~~~~~~~~g 161 (346)
T d2ajaa1 85 KKGIKSEVICFVAAITGCSSALDTLCLLLT--SDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTE-IMAMIQAEN 161 (346)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC----CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTT-HHHHHSHHH
T ss_pred hccCCCCcHHHHHHHhCCHHHHHHHHHHHh--CCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccccCC
Confidence 567889999999999999887776 677 89999999999999999999999999999999999986 5544 569
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcccCCcc--CCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhC
Q 044420 116 MTPLYMAAVLAQRDMALYLYDDAKAKDN--LTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARK 193 (545)
Q Consensus 116 ~tpL~~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~ 193 (545)
.||||+|+++|+.++|++|++.|++... .+..++++++++|...|+.+++ ++|.+.|++++ ++.+.+...
T Consensus 162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv-~~Ll~~ga~~~-------~~~~~~~~~ 233 (346)
T d2ajaa1 162 YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVI-NFLLDCPVMLA-------YAEIHEFEY 233 (346)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHH-HHHTTSHHHHH-------HHHHCTTTT
T ss_pred CChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHH-HHHHhCCCCcc-------hHHHHHHHc
Confidence 9999999999999999999999986322 2234445555555555554443 44444444433 233333333
Q ss_pred CCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCc-cccc----
Q 044420 194 PSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDL-VHEL---- 268 (545)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~-~~~~---- 268 (545)
++ .+.++++.+...+..+....+....++. .+..
T Consensus 234 ~~-----------------------------------------~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~ 272 (346)
T d2ajaa1 234 GE-----------------------------------------KYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSE 272 (346)
T ss_dssp TT-----------------------------------------TTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHH
T ss_pred Cc-----------------------------------------HhhhHHHHHhhccchHHHHHHHHhcccccHhHHhccc
Confidence 32 2234444444444444433333322220 1111
Q ss_pred ---ccCCCcHHHHHHHhCchHHHHHHHhhccchhh-hhhcccCCCCChhhhhccCCCCCccccccch
Q 044420 269 ---DDNNRSIFHIAVLHRHANIFNLIYEIGFTKEL-MATFKDHDQNNMLHLAAKSPHPSRVSIVSGA 331 (545)
Q Consensus 269 ---d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~-~~n~~d~~G~TpLh~A~~~~~~~~~~~L~~~ 331 (545)
...+.++++.|+..++.+++++|++.+..... ..+..+.+|+||||+|++.|+.+++++|++.
T Consensus 273 ~~~~~~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~LhlA~~~Gn~e~v~lLL~~ 339 (346)
T d2ajaa1 273 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSI 339 (346)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTS
T ss_pred ccccchhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHHHHHHcCcHHHHHHHhCC
Confidence 12345789999999999999999998765332 1344567899999999999999999998653
|
| >d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Neurogenic locus notch receptor domain species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.94 E-value=4.9e-26 Score=207.88 Aligned_cols=207 Identities=28% Similarity=0.273 Sum_probs=173.3
Q ss_pred hHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHH
Q 044420 22 WPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIML 101 (545)
Q Consensus 22 ~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll 101 (545)
.|+|+.|++ +| .+++...|.+|+||||+||+.|+.+++++|++ .|++++.+|..+.++++.++..++.+......
T Consensus 2 ~~~v~~Ll~--~g-~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~--~g~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (209)
T d1ot8a_ 2 AQVISDLLA--QG-AELNATMDKTGETSLHLAARFARADAAKRLLD--AGADANSQDNTGRTPLHAAVAADAMGVFQILL 76 (209)
T ss_dssp HHHHHHHHH--HH-HHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHH--CC-CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHh--hccccccccccccccccccccccccccccccc
Confidence 589999999 77 88875679999999999999999999999999 89999999999999999999999999888888
Q ss_pred HcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCC
Q 044420 102 KKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDG 181 (545)
Q Consensus 102 ~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~ 181 (545)
.............|.++.+.+.........+.|.+.+.+++. ++.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-----------------------------------~~~ 121 (209)
T d1ot8a_ 77 RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADADINA-----------------------------------ADN 121 (209)
T ss_dssp TCTTCCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTC-----------------------------------BCT
T ss_pred cccccccccccccccccccccccccchhhhhhhhhhcccccc-----------------------------------cCC
Confidence 776665566777899999999999999999999999987443 455
Q ss_pred CCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHC
Q 044420 182 NYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSY 261 (545)
Q Consensus 182 ~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~ 261 (545)
.|.|||+.++..+.. + +++.+++.+ .+.+..|..|.||||+|+..|+.+++++|+++|
T Consensus 122 ~~~t~l~~~~~~~~~-----------------~----~~~~l~~~~-~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g 179 (209)
T d1ot8a_ 122 SGKTALHWAAAVNNT-----------------E----AVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDNF 179 (209)
T ss_dssp TSCBHHHHHHHTTCH-----------------H----HHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CCCCcchhhcccCcc-----------------e----eeeeecccc-ccccccccccccccchhccccHHHHHHHHHHCC
Confidence 555666666655532 1 223333333 334455678899999999999999999999999
Q ss_pred CCcccccccCCCcHHHHHHHhCchHHHHHH
Q 044420 262 PDLVHELDDNNRSIFHIAVLHRHANIFNLI 291 (545)
Q Consensus 262 ~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~L 291 (545)
++ ++.+|..|+||||+|+++|+.++|++|
T Consensus 180 ad-~n~~d~~g~Tpl~~A~~~~~~~iv~lL 208 (209)
T d1ot8a_ 180 AN-REITDHMDRLPRDVASERLHHDIVRLL 208 (209)
T ss_dssp CC-TTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred CC-CCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence 99 899999999999999999999999986
|
| >d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: p18ink4C(ink6) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.9e-26 Score=199.24 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=114.7
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
+|||.||..|+.++|+.|++ ++ .+++ .+|.+|.||||+|+ .|+.+++++|++ ++++++.++..|.+|++.++.
T Consensus 3 ~~Lh~Aa~~g~~~~v~~Ll~--~g-~d~n-~~d~~g~TpL~~A~-~~~~ei~~~Ll~--~~a~~~~~~~~~~~~l~~~~~ 75 (156)
T d1ihba_ 3 NELASAAARGDLEQLTSLLQ--NN-VNVN-AQNGFGRTALQVMK-LGNPEIARRLLL--RGANPDLKDRTGFAVIHDAAR 75 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHTT--SC-CCTT-CCCTTSCCHHHHCC-SSCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--CC-CCcC-ccCCcccccccccc-cccccccccccc--cccccccccccCccccccccc
Confidence 79999999999999999999 67 7776 78999999999886 799999999999 899999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHccc
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAK 139 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~ 139 (545)
.++.+.++.|++.+.++ +..+..|.+|||+|+..++.+++++|+++++
T Consensus 76 ~~~~~~~~~l~~~~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~ 123 (156)
T d1ihba_ 76 AGFLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTA 123 (156)
T ss_dssp HTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 99999999999999997 8899999999999999999999999999886
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=3.7e-26 Score=198.61 Aligned_cols=151 Identities=19% Similarity=0.152 Sum_probs=100.3
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQR 128 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~ 128 (545)
.||.||..|+.++|+.|++. .+++++.+|..|+||||+|+ .|+.+++++|++++.++ +..+..|.+|++.++..++.
T Consensus 5 ~L~~Aa~~g~~~~vk~lL~~-~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~-~~~~~~~~~~l~~~~~~~~~ 81 (156)
T d1bd8a_ 5 RLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASP-NVQDTSGTSPVHDAARTGFL 81 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHh-CCCCCCccCCCCCccccccc-ccccccccccccccccc-cccccccccccccccccccc
Confidence 47777777777777777764 46677777777777777665 36667777777777765 66666777777777777777
Q ss_pred HHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHh
Q 044420 129 DMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRL 208 (545)
Q Consensus 129 ~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~ 208 (545)
+++++++++|++++ .+
T Consensus 82 ~~~~~~l~~~~~~n-----------------------------------~~----------------------------- 97 (156)
T d1bd8a_ 82 DTLKVLVEHGADVN-----------------------------------VP----------------------------- 97 (156)
T ss_dssp HHHHHHHHTTCCSC-----------------------------------CC-----------------------------
T ss_pred cccccccccccccc-----------------------------------cc-----------------------------
Confidence 77777776665411 11
Q ss_pred HHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHHH
Q 044420 209 MHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANIF 288 (545)
Q Consensus 209 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv 288 (545)
|..|.||||+|++.|+.+++++|+ .+++ ++.+|.+|+||||+|+++|+.+++
T Consensus 98 --------------------------~~~~~t~L~~A~~~~~~~i~~~L~-~~~~-~~~~d~~G~TpL~~A~~~g~~~iv 149 (156)
T d1bd8a_ 98 --------------------------DGTGALPIHLAVQEGHTAVVSFLA-AESD-LHRRDARGLTPLELALQRGAQDLV 149 (156)
T ss_dssp --------------------------CTTSCCHHHHHHHHTCHHHHHHHH-TTSC-TTCCCTTSCCHHHHHHHSCCHHHH
T ss_pred --------------------------cCCCCeeecccccccccccccccc-cccc-ccccCCCCCCHHHHHHHcCCHHHH
Confidence 134456666666666666776655 4566 666777777777777777777777
Q ss_pred HHHHhh
Q 044420 289 NLIYEI 294 (545)
Q Consensus 289 ~~Ll~~ 294 (545)
++|+++
T Consensus 150 ~~Ll~h 155 (156)
T d1bd8a_ 150 DILQGH 155 (156)
T ss_dssp HHHHTT
T ss_pred HHHHhh
Confidence 777654
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.1e-26 Score=224.84 Aligned_cols=200 Identities=15% Similarity=0.147 Sum_probs=125.5
Q ss_pred CCcccccc-cCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCC
Q 044420 70 KPEDLTLQ-DRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPED 148 (545)
Q Consensus 70 ~~~~~~~~-d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~ 148 (545)
.+.++|.. |.+|+||||+||..|+.++|++|+++|+++ +.+|..|+||||.|+..++..- .
T Consensus 95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~~------~----------- 156 (301)
T d1sw6a_ 95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNR-LYGDNMGESCLVKAVKSVNNYD------S----------- 156 (301)
T ss_dssp SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TBCCTTCCCHHHHHHHSSHHHH------T-----------
T ss_pred cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CcCCcccccHHHHhhhcccchh------h-----------
Confidence 46677865 899999999999999999999999999997 8999999999999998765200 0
Q ss_pred hhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCc
Q 044420 149 QNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDD 228 (545)
Q Consensus 149 ~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 228 (545)
+.++.+..++. ..++.+|..|+||||+++..+....... ...-.++.+++.+...+.
T Consensus 157 -----------~~~~~ll~~l~---~~~~~~d~~g~t~lh~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~~ 213 (301)
T d1sw6a_ 157 -----------GTFEALLDYLY---PCLILEDSMNRTILHHIIITSGMTGCSA---------AAKYYLDILMGWIVKKQN 213 (301)
T ss_dssp -----------TCHHHHHHHHG---GGGGEECTTCCCHHHHHHHHHTSTTCHH---------HHHHHHHHHHHHHHHGGG
T ss_pred -----------hhHHHHHHHHh---hhhhhcccccCCHHHHHHHHhCccccHH---------HHHHHHHHHHHHHHhcCC
Confidence 00111111111 2234566777777777765543321100 000012223344444443
Q ss_pred hhhhhhccCCChHHHHHHhcCcHHHHH-----HHHHHCCCcccccccCCCcHHHHHHHhCchHHHHHHHhhccchhhhhh
Q 044420 229 SEFTDLIRKPSHLLFDAAELGNFEFLA-----ELICSYPDLVHELDDNNRSIFHIAVLHRHANIFNLIYEIGFTKELMAT 303 (545)
Q Consensus 229 ~~~~~~~~~g~tpLh~A~~~g~~~~v~-----~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~iv~~Ll~~g~~~~~~~n 303 (545)
.........+.++++.+........+. .++... +|.+|.+|+||||+|+++|+.++|++|+++|++ ++
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd----~~ 286 (301)
T d1sw6a_ 214 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD----PF 286 (301)
T ss_dssp CCEEEC----------------CHHHHHCSHHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC----TT
T ss_pred cchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcC---ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC----CC
Confidence 333333345566666665554433332 223322 678899999999999999999999999999999 77
Q ss_pred cccCCCCChhhhhc
Q 044420 304 FKDHDQNNMLHLAA 317 (545)
Q Consensus 304 ~~d~~G~TpLh~A~ 317 (545)
.+|++|+||||+|+
T Consensus 287 ~~n~~G~Tpl~~A~ 300 (301)
T d1sw6a_ 287 IANKSGLRPVDFGA 300 (301)
T ss_dssp CCCTTSCCGGGGTC
T ss_pred CCCCCCCCHHHHcC
Confidence 89999999999997
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.3e-25 Score=194.36 Aligned_cols=149 Identities=21% Similarity=0.195 Sum_probs=98.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
||||.||+.|+.++|++||+ +|++++ .|..|.||||+|+..++.++++.++...... ...+..+.++++.++...+
T Consensus 4 t~L~~Aa~~g~~~~v~~LL~--~ga~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 79 (153)
T d1awcb_ 4 KKLLEAARAGQDDEVRILMA--NGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR-DARTKVDRTPLHMAASEGH 79 (153)
T ss_dssp HHHHHHHHHTCHHHHHHHHH--HTCCCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHH--cCCCcc-cccCCCccccccccccccccccccccccccc-ccccccccccccccccccc
Confidence 66666666666666666666 456555 4666666666666666666666666666554 4555566666666666666
Q ss_pred HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHHHHhCCCCccccccchhhH
Q 044420 128 RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHVLARKPSAFASRNQGLLTR 207 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~ 207 (545)
.+++++++.++.+. +
T Consensus 80 ~~~~~~l~~~~~~~-----------------------------------~------------------------------ 94 (153)
T d1awcb_ 80 ANIVEVLLKHGADV-----------------------------------N------------------------------ 94 (153)
T ss_dssp HHHHHHHHTTTCCT-----------------------------------T------------------------------
T ss_pred ceeeecccccCCcc-----------------------------------c------------------------------
Confidence 66666666555431 0
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccccCCCcHHHHHHHhCchHH
Q 044420 208 LMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELDDNNRSIFHIAVLHRHANI 287 (545)
Q Consensus 208 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~t~Lh~A~~~~~~~i 287 (545)
.++.+|.||||+|+..|+.+++++|++.|++ ++.+|.+|+||||+|+.+|+.++
T Consensus 95 -------------------------~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad-~~~~d~~g~Tpl~~A~~~g~~ei 148 (153)
T d1awcb_ 95 -------------------------AKDMLKMTALHWATEHNHQEVVELLIKYGAD-VHTQSKFCKTAFDISIDNGNEDL 148 (153)
T ss_dssp -------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHTTCHHH
T ss_pred -------------------------cccccCchHHHhhhhcchhheeeeccccccC-CcccCCCCCCHHHHHHHcCCHHH
Confidence 1124556666666777777777777777777 67777777777777777777777
Q ss_pred HHHH
Q 044420 288 FNLI 291 (545)
Q Consensus 288 v~~L 291 (545)
+++|
T Consensus 149 v~lL 152 (153)
T d1awcb_ 149 AEIL 152 (153)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 7765
|
| >d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p19ink4D species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.3e-25 Score=189.59 Aligned_cols=151 Identities=18% Similarity=0.212 Sum_probs=132.4
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
..||.||..|+.++|+.|++ ..+ .+++ ..|..|+||||+|+. |+.+++++|++ .+.+++.++..|.+|++.++.
T Consensus 4 ~~L~~Aa~~g~~~~vk~lL~-~~~-~~~n-~~d~~g~t~L~~A~~-~~~~~v~~Ll~--~~~~~~~~~~~~~~~l~~~~~ 77 (156)
T d1bd8a_ 4 DRLSGAAARGDVQEVRRLLH-REL-VHPD-ALNRFGKTALQVMMF-GSTAIALELLK--QGASPNVQDTSGTSPVHDAAR 77 (156)
T ss_dssp HHHHHHHHHTCHHHHHHHHH-TTC-CCTT-CCCTTSCCHHHHSCT-TCHHHHHHHHH--TTCCTTCCCTTSCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH-hCC-CCCC-ccCCCCCcccccccc-ccccccccccc--ccccccccccccccccccccc
Confidence 45999999999999999999 456 6665 789999999999874 89999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLE 170 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~ 170 (545)
.++.++++.++++|+++ +.+|.+|.||||+|++.|+.+++++|+ .|++++..+..|.||||+|+..+.. +++ ++|.
T Consensus 78 ~~~~~~~~~~l~~~~~~-n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~-~iv-~~Ll 153 (156)
T d1bd8a_ 78 TGFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQ-DLV-DILQ 153 (156)
T ss_dssp TTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCH-HHH-HHHH
T ss_pred ccccccccccccccccc-ccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCH-HHH-HHHH
Confidence 99999999999999997 889999999999999999999999887 6788777888888888888776553 444 4444
Q ss_pred h
Q 044420 171 D 171 (545)
Q Consensus 171 ~ 171 (545)
+
T Consensus 154 ~ 154 (156)
T d1bd8a_ 154 G 154 (156)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Swi6 ankyrin-repeat fragment species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.6e-26 Score=220.49 Aligned_cols=196 Identities=15% Similarity=0.060 Sum_probs=125.8
Q ss_pred hhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCH---HHHHHHHHcCcccccCCCC
Q 044420 37 ILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSI---HIAKIMLKKNERLLTMRGG 113 (545)
Q Consensus 37 ~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~---~iv~~Ll~~~~~~~~~~~~ 113 (545)
+++...|.+|+||||+||..|+.++|++|++ +|++++.+|..|+||||.||..++. +.++.+++...+....+|.
T Consensus 98 dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~--~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~ 175 (301)
T d1sw6a_ 98 NLNIPVDEHGNTPLHWLTSIANLELVKHLVK--HGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 175 (301)
T ss_dssp CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHH--TTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECT
T ss_pred CcCcCcCCCCCCHHHHHHHcCCHHHHHHHHH--CCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhccc
Confidence 4443458999999999999999999999999 8999999999999999999987752 2223333322222256789
Q ss_pred CCCcHHHHHHHcCC----HHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHHHHHhCCCcccccCCCCchHHHH
Q 044420 114 ENMTPLYMAAVLAQ----RDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALKLLEDHSGLAVARDGNYETALHV 189 (545)
Q Consensus 114 ~g~tpL~~A~~~g~----~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~lL~~~~~~~~~~d~~g~tpLh~ 189 (545)
.|+||||+++..+. .+.+++.++. .+..++.............+.++++.
T Consensus 176 ~g~t~lh~~~~~~~~~~~~~~~~~~~~~--------------------------~~~~l~~~~~~~~~~~~~~~~~~~~~ 229 (301)
T d1sw6a_ 176 MNRTILHHIIITSGMTGCSAAAKYYLDI--------------------------LMGWIVKKQNRPIQSGTNEKESKPND 229 (301)
T ss_dssp TCCCHHHHHHHHHTSTTCHHHHHHHHHH--------------------------HHHHHHHGGGCCEEEC----------
T ss_pred ccCCHHHHHHHHhCccccHHHHHHHHHH--------------------------HHHHHHhcCCcchhcccccccchhHH
Confidence 99999999886543 3333333221 12223333333344455556666666
Q ss_pred HHhCCCCccccccchhhHhHHHHHHHHHHHHHHHhcCCchhhhhhccCCChHHHHHHhcCcHHHHHHHHHHCCCcccccc
Q 044420 190 LARKPSAFASRNQGLLTRLMHSALQLVKSLWEAILKRDDSEFTDLIRKPSHLLFDAAELGNFEFLAELICSYPDLVHELD 269 (545)
Q Consensus 190 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~~~~~~~~~d 269 (545)
+......... .. .....+.. ..++.+|.+|+||||+|++.|+.++|++|+++|++ ++.+|
T Consensus 230 ~~~~~~~~~~--------------~~--~~~~~~~~---~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd-~~~~n 289 (301)
T d1sw6a_ 230 KNGERKDSIL--------------EN--LDLKWIIA---NMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD-PFIAN 289 (301)
T ss_dssp ------CHHH--------------HH--CSHHHHHH---HTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCC-TTCCC
T ss_pred HHhcchHHHH--------------HH--HhhHHHHh---cCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC-CCCCC
Confidence 5544422110 00 00111111 12456679999999999999999999999999999 99999
Q ss_pred cCCCcHHHHHH
Q 044420 270 DNNRSIFHIAV 280 (545)
Q Consensus 270 ~~G~t~Lh~A~ 280 (545)
..|+||||+|+
T Consensus 290 ~~G~Tpl~~A~ 300 (301)
T d1sw6a_ 290 KSGLRPVDFGA 300 (301)
T ss_dssp TTSCCGGGGTC
T ss_pred CCCCCHHHHcC
Confidence 99999999985
|
| >d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: GA bindinig protein (GABP) beta 1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=4.3e-24 Score=184.65 Aligned_cols=144 Identities=17% Similarity=0.138 Sum_probs=129.7
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFA 88 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A 88 (545)
..||||.||+.|+.++|+.||+ ++ ++++ .|..|+||||+|+..++.++++.++. .+......+..+.++++.+
T Consensus 2 ~~t~L~~Aa~~g~~~~v~~LL~--~g-a~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 74 (153)
T d1awcb_ 2 LGKKLLEAARAGQDDEVRILMA--NG-APFT--TDWLGTSPLHLAAQYGHFSTTEVLLR--AGVSRDARTKVDRTPLHMA 74 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHH--HT-CCCC--CCTTCCCHHHHHHHHTCHHHHHHHHT--TTCCTTCCCTTCCCHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHH--cC-CCcc--cccCCCcccccccccccccccccccc--ccccccccccccccccccc
Confidence 3499999999999999999999 56 5543 68999999999999999999999998 6777777888899999999
Q ss_pred HHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcC
Q 044420 89 VAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTD 160 (545)
Q Consensus 89 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~ 160 (545)
+...+.++++.+.+++++. +.+|.+|.||||+|+..|+.+++++|+++|++++..+..|.||+|+|+..+.
T Consensus 75 ~~~~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~ 145 (153)
T d1awcb_ 75 ASEGHANIVEVLLKHGADV-NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN 145 (153)
T ss_dssp HHHTCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cccccceeeecccccCCcc-ccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC
Confidence 9999999999999999997 8899999999999999999999999999999877777777788877776654
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=8.8e-25 Score=181.81 Aligned_cols=120 Identities=19% Similarity=0.148 Sum_probs=110.9
Q ss_pred CCHHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCC-cHHHH
Q 044420 9 ICVPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGN-TAFCF 87 (545)
Q Consensus 9 ~~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~-TpLh~ 87 (545)
+.++||.||+.|+.++|++|++ ++ .+++ .+|..|.||||+|+ .|+.+++++|++ +|++++.+|..|. ||||+
T Consensus 3 ~~~~L~~Aa~~G~~~~v~~Ll~--~g-ad~n-~~~~~g~t~l~~a~-~g~~~~v~~Ll~--~ga~~~~~~~~~~~~~L~~ 75 (125)
T d1bi7b_ 3 SADWLATAAARGRVEEVRALLE--AG-ANPN-APNSYGRRPIQVMM-MGSARVAELLLL--HGAEPNCADPATLTRPVHD 75 (125)
T ss_dssp STTHHHHHHHHTCHHHHHHHHT--TT-CCTT-CCCSSSCCTTTSSC-TTCHHHHHHHHT--TTCCCCCCCTTTCCCHHHH
T ss_pred ChhHHHHHHHCCCHHHHHHHHH--cC-Cccc-cccccccccccccc-cccccccccccc--ccccccccccccccccccc
Confidence 5689999999999999999999 67 6776 78999999999775 799999999999 8999999998875 69999
Q ss_pred HHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHH
Q 044420 88 AVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYD 136 (545)
Q Consensus 88 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~ 136 (545)
|++.|+.+++++|+++|+++ +.+|.+|+||||+|+++|+.+++++|++
T Consensus 76 A~~~g~~~~v~~Ll~~ga~~-~~~d~~G~T~l~~A~~~g~~~~v~~Lls 123 (125)
T d1bi7b_ 76 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRA 123 (125)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred cccccccccccccccccccc-ccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence 99999999999999999997 8999999999999999999999999975
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.90 E-value=3.2e-25 Score=182.41 Aligned_cols=105 Identities=25% Similarity=0.278 Sum_probs=72.2
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
|||++||+.|+.++|+.|++ .+ .+++ .+|.+|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+.
T Consensus 4 tpL~~A~~~g~~~~v~~Ll~--~g-~d~n-~~~~~g~t~lh~A~~~~~~~~~~~ll~--~g~din~~d~~g~tpLh~A~~ 77 (118)
T d1myoa_ 4 KEFMWALKNGDLDEVKDYVA--KG-EDVN-RTLEGGRKPLHYAADCGQLEILEFLLL--KGADINAPDKHHITPLLSAVY 77 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHT--TT-CCCC-CCSSSSCCTTHHHHHHSTTTHHHHHHH--SSCTTTCCSSSCSCHHHHHHT
T ss_pred hHHHHHHHCCCHHHHHHHHH--hh-hccc-ccccccccccccccccccccccccccc--ccceeeecccccccchhhhhh
Confidence 66777777777777777776 44 4444 556667777777777777777777776 566777777777777777777
Q ss_pred hCCHHHHHHHHHcCcccccCCCCCCCcHHHHH
Q 044420 91 AGSIHIAKIMLKKNERLLTMRGGENMTPLYMA 122 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A 122 (545)
.|+.+++++|+++|+++ +.+|.+|.||||+|
T Consensus 78 ~~~~~~v~~Ll~~Gad~-~~~d~~G~t~l~~a 108 (118)
T d1myoa_ 78 EGHVSCVKLLLSKGADK-TVKGPDGLTALEAT 108 (118)
T ss_dssp TTCCHHHHHHHTTCCCS-SSSSSSTCCCCCTC
T ss_pred cCchhhhhhhhcccccc-eeeCCCCCCHHHHH
Confidence 77777777777777765 66677777777666
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=5.9e-24 Score=178.00 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=108.4
Q ss_pred HHhHHHHHcCChHHHHHhhcCCCCchhhhhccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHH
Q 044420 11 VPLQKAALKGNWPTAKHLLGNEDPRSILCAGIAKGYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVA 90 (545)
Q Consensus 11 t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~ 90 (545)
++|+.||..|+.++|+.|++ ++ .+++ .+|.+|+||||+|+..|+.+++++|++ .|++++.+|.+|+||||+|+.
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~--~g-~d~n-~~d~~g~t~Lh~A~~~~~~~~~~~ll~--~g~~~~~~d~~g~tpLh~A~~ 76 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIY--EV-DDPS-LPNDEGITALHNAVCAGHTEIVKFLVQ--FGVNVNAADSDGWTPLHCAAS 76 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTS--TT-SSCC-CCCTTSCCHHHHHHHHTCHHHHHHHHH--HTCCTTCCCTTCCCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHH--cC-CCcc-ccccccccccccccccccccccccccc--cccccccccccCcccccccch
Confidence 68999999999999999999 66 6765 789999999999999999999999999 799999999999999999999
Q ss_pred hCCHHHHHHHHHcCcccccCCC-CCCCcHHHHH--HHcCCHHHHHHHHHccc
Q 044420 91 AGSIHIAKIMLKKNERLLTMRG-GENMTPLYMA--AVLAQRDMALYLYDDAK 139 (545)
Q Consensus 91 ~g~~~iv~~Ll~~~~~~~~~~~-~~g~tpL~~A--~~~g~~~iv~~Ll~~~~ 139 (545)
.|+.+++++|+++|+++ +..+ .+|+||++++ ++.|+.+++++|++.+.
T Consensus 77 ~g~~~~v~~Ll~~ga~v-~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~ 127 (130)
T d1ycsb1 77 CNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQE 127 (130)
T ss_dssp TTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCc-ccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHH
Confidence 99999999999999997 5444 5688887765 57789999999997654
|
| >d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Myotrophin species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.88 E-value=5.6e-24 Score=174.90 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=93.7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcC
Q 044420 47 ETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLA 126 (545)
Q Consensus 47 ~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g 126 (545)
+|||++|++.|+.++|++|++ .|++++.+|.+|+||||+|+..|+.+++++|+++|+++ +.+|.+|+||||+|+.+|
T Consensus 3 ~tpL~~A~~~g~~~~v~~Ll~--~g~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~di-n~~d~~g~tpLh~A~~~~ 79 (118)
T d1myoa_ 3 DKEFMWALKNGDLDEVKDYVA--KGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADI-NAPDKHHITPLLSAVYEG 79 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHT--TTCCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTT-TCCSSSCSCHHHHHHTTT
T ss_pred ChHHHHHHHCCCHHHHHHHHH--hhhcccccccccccccccccccccccccccccccccee-eecccccccchhhhhhcC
Confidence 589999999999999999999 89999999999999999999999999999999999997 899999999999999999
Q ss_pred CHHHHHHHHHcccCCccCCCCChhhHH
Q 044420 127 QRDMALYLYDDAKAKDNLTPEDQNALF 153 (545)
Q Consensus 127 ~~~iv~~Ll~~~~~~~~~~~~~~t~l~ 153 (545)
+.+++++|+++|++++..+..|.||++
T Consensus 80 ~~~~v~~Ll~~Gad~~~~d~~G~t~l~ 106 (118)
T d1myoa_ 80 HVSCVKLLLSKGADKTVKGPDGLTALE 106 (118)
T ss_dssp CCHHHHHHHTTCCCSSSSSSSTCCCCC
T ss_pred chhhhhhhhcccccceeeCCCCCCHHH
Confidence 999999999999874444444444433
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.88 E-value=1.4e-22 Score=174.09 Aligned_cols=125 Identities=21% Similarity=0.205 Sum_probs=111.0
Q ss_pred CHHhHHHHHcCChHHHHHhhcCCCCchhhh-----hccCCCCCcHHHHHHHc---CCHHHHHHHHHcCCCcccccccCCC
Q 044420 10 CVPLQKAALKGNWPTAKHLLGNEDPRSILC-----AGIAKGYETLLHLAAGA---RQTGFVEELLKLMKPEDLTLQDRNG 81 (545)
Q Consensus 10 ~t~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~-----~~~~~~g~T~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~d~~g 81 (545)
...|+.|++.++.+.+..++. .+ .+.. ...+..|+||||+|++. |+.++|++|++ +|++++.+|.+|
T Consensus 7 l~~L~~Av~~~dl~~l~~~~~--~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~--~gadin~~d~~g 81 (154)
T d1dcqa1 7 LHSLCEAVKTRDIFGLLQAYA--DG-VDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ--NSGNLDKQTGKG 81 (154)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH--TT-CCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHH--HCSCTTCCCTTC
T ss_pred HHHHHHHHHhCCHHHHHHHHH--cC-CCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHH--cCCChhhhhhhh
Confidence 345778999999999999988 43 3332 12367799999999975 67899999999 799999999999
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCCHHHHHHHHHcccC
Q 044420 82 NTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 82 ~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
+||||+||..|+.+++++|+++|+++ +.+|.+|+||||+|++.|+.+++++|++.++.
T Consensus 82 ~TpLh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~ 139 (154)
T d1dcqa1 82 STALHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQALSG 139 (154)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ccccccccccccccccccccccCccc-cccCCCCCCHHHHHHHcCCHHHHHHHHHhCCC
Confidence 99999999999999999999999997 89999999999999999999999999998764
|
| >d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Cell cycle inhibitor p16ink4A species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.87 E-value=2.2e-22 Score=167.06 Aligned_cols=118 Identities=16% Similarity=0.090 Sum_probs=104.8
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCC-cHHHHHH
Q 044420 45 GYETLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENM-TPLYMAA 123 (545)
Q Consensus 45 ~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~-tpL~~A~ 123 (545)
.+.++||+|++.|+.++|++|++ +|++++.+|..|.||||.|+ .|+.+++++|+++|+++ +.++..|. ||||+|+
T Consensus 2 p~~~~L~~Aa~~G~~~~v~~Ll~--~gad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~ 77 (125)
T d1bi7b_ 2 PSADWLATAAARGRVEEVRALLE--AGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHDAA 77 (125)
T ss_dssp CSTTHHHHHHHHTCHHHHHHHHT--TTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHH
T ss_pred CChhHHHHHHHCCCHHHHHHHHH--cCCccccccccccccccccc-ccccccccccccccccc-cccccccccccccccc
Confidence 35689999999999999999999 89999999999999999775 79999999999999997 77777765 6999999
Q ss_pred HcCCHHHHHHHHHcccCCccCCCCChhhHHHHHHhcCcHHHHHH
Q 044420 124 VLAQRDMALYLYDDAKAKDNLTPEDQNALFFTCISTDLHDLALK 167 (545)
Q Consensus 124 ~~g~~~iv~~Ll~~~~~~~~~~~~~~t~l~~aa~~~~~~~~~~~ 167 (545)
+.|+.+++++|+++|++++..+..|.||+|+|+..+. .+++..
T Consensus 78 ~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~-~~~v~~ 120 (125)
T d1bi7b_ 78 REGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGH-RDVARY 120 (125)
T ss_dssp HHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTC-HHHHHH
T ss_pred ccccccccccccccccccccccCCCCCHHHHHHHcCC-HHHHHH
Confidence 9999999999999999988888899999998887654 455433
|
| >d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: 53BP2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=2.1e-22 Score=168.41 Aligned_cols=115 Identities=21% Similarity=0.212 Sum_probs=100.4
Q ss_pred cHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCCcHHHHHHHhCCHHHHHHHHHcCcccccCCCCCCCcHHHHHHHcCC
Q 044420 48 TLLHLAAGARQTGFVEELLKLMKPEDLTLQDRNGNTAFCFAVAAGSIHIAKIMLKKNERLLTMRGGENMTPLYMAAVLAQ 127 (545)
Q Consensus 48 T~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~d~~g~TpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 127 (545)
++||.||..|+.++|+.|++ +|++++.+|.+|+||||+|+..|+.+++++|++.|+++ +.+|.+|+||||+|+.+|+
T Consensus 3 ~lL~~A~~~G~~~~v~~Ll~--~g~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~-~~~d~~g~tpLh~A~~~g~ 79 (130)
T d1ycsb1 3 ALLLDSSLEGEFDLVQRIIY--EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNN 79 (130)
T ss_dssp HHHHHHHHHTCHHHHHHHTS--TTSSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHH--cCCCcccccccccccccccccccccccccccccccccc-ccccccCcccccccchhhH
Confidence 68999999999999999999 89999999999999999999999999999999999997 8999999999999999999
Q ss_pred HHHHHHHHHcccCCccCCCC-ChhhHHHHH-HhcCcHHHH
Q 044420 128 RDMALYLYDDAKAKDNLTPE-DQNALFFTC-ISTDLHDLA 165 (545)
Q Consensus 128 ~~iv~~Ll~~~~~~~~~~~~-~~t~l~~aa-~~~~~~~~~ 165 (545)
.+++++|+++|++++..+.. +.+++..+. ...++.+++
T Consensus 80 ~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv 119 (130)
T d1ycsb1 80 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCS 119 (130)
T ss_dssp HHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHH
T ss_pred HHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHH
Confidence 99999999999997766643 556655543 233443443
|
| >d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: beta-hairpin-alpha-hairpin repeat superfamily: Ankyrin repeat family: Ankyrin repeat domain: Pyk2-associated protein beta species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.83 E-value=4e-20 Score=158.54 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=67.9
Q ss_pred HHHHHHHcCCHHHHHHHHHcCCCcccccc------cCCCCcHHHHHHHh---CCHHHHHHHHHcCcccccCCCCCCCcHH
Q 044420 49 LLHLAAGARQTGFVEELLKLMKPEDLTLQ------DRNGNTAFCFAVAA---GSIHIAKIMLKKNERLLTMRGGENMTPL 119 (545)
Q Consensus 49 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~------d~~g~TpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpL 119 (545)
.|+.|++.++++.+..++. .|.+++.. +..|+||||+|++. |+.++|++|+++|+++ +.+|.+|+|||
T Consensus 9 ~L~~Av~~~dl~~l~~~~~--~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadi-n~~d~~g~TpL 85 (154)
T d1dcqa1 9 SLCEAVKTRDIFGLLQAYA--DGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTAL 85 (154)
T ss_dssp HHHHHHHTTCHHHHHHHHH--TTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCHH
T ss_pred HHHHHHHhCCHHHHHHHHH--cCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCCh-hhhhhhhcccc
Confidence 3556778888888888887 56665543 56788888888864 5678888888888886 77888888888
Q ss_pred HHHHHcCCHHHHHHHHHcccC
Q 044420 120 YMAAVLAQRDMALYLYDDAKA 140 (545)
Q Consensus 120 ~~A~~~g~~~iv~~Ll~~~~~ 140 (545)
|+|++.|+.+++++|+++|++
T Consensus 86 h~A~~~~~~~~v~~Ll~~gad 106 (154)
T d1dcqa1 86 HYCCLTDNAECLKLLLRGKAS 106 (154)
T ss_dssp HHHHHTTCHHHHHHHHHTTCC
T ss_pred ccccccccccccccccccCcc
Confidence 888888888888888877765
|