Citrus Sinensis ID: 044427
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | 2.2.26 [Sep-21-2011] | |||||||
| Q39547 | 731 | Cucumisin OS=Cucumis melo | N/A | no | 0.922 | 0.926 | 0.523 | 0.0 | |
| Q9LLL8 | 749 | Xylem serine proteinase 1 | no | no | 0.942 | 0.923 | 0.477 | 1e-169 | |
| O65351 | 757 | Subtilisin-like protease | no | no | 0.899 | 0.871 | 0.435 | 1e-146 | |
| O64495 | 775 | Subtilisin-like protease | no | no | 0.911 | 0.863 | 0.398 | 1e-131 | |
| P29141 | 806 | Minor extracellular prote | yes | no | 0.667 | 0.607 | 0.254 | 7e-25 | |
| P15292 | 1962 | PIII-type proteinase OS=L | yes | no | 0.589 | 0.220 | 0.259 | 2e-10 | |
| P16271 | 1902 | PI-type proteinase OS=Lac | N/A | no | 0.591 | 0.228 | 0.267 | 1e-09 | |
| Q5X9R0 | 1184 | C5a peptidase OS=Streptoc | N/A | no | 0.464 | 0.288 | 0.271 | 2e-09 | |
| P15293 | 1902 | PII-type proteinase OS=La | N/A | no | 0.584 | 0.225 | 0.256 | 2e-09 | |
| Q8NZ80 | 1150 | C5a peptidase OS=Streptoc | N/A | no | 0.464 | 0.296 | 0.271 | 2e-09 |
| >sp|Q39547|CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 691 bits (1783), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/691 (52%), Positives = 469/691 (67%), Gaps = 14/691 (2%)
Query: 15 HHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIH 74
H +ML+ V+GST A ES++++Y RSFNGFA KLT+EE + + EGV+SV N ++H
Sbjct: 52 HRAMLEQVVGSTF-APESVLHTYKRSFNGFAVKLTEEEAEKIASMEGVVSVFLNEMNELH 110
Query: 75 TTRSWDFMGFSKGKLSSSQ-EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-TGA 132
TTRSWDF+GF SQ E ++++G+LDTGIWPES SF+D+G SPPP KWKG C T
Sbjct: 111 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 170
Query: 133 NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTA 192
NF CN KIIGAR Y+ D + PRD+ GHGTHT+STAAG V A+ YGL GTA
Sbjct: 171 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 230
Query: 193 RGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIG 252
RGGVP ARI+ YKVCW+DGC+ DILAA+DDAIADGVDIIS+S+G P YF D IAIG
Sbjct: 231 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 290
Query: 253 SFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312
SFHA++ GILTSNSAGN GP+ ++ ++ +PW L+VAAS++DRKFV Q +GNG ++ G+S
Sbjct: 291 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 350
Query: 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDI 372
IN+FD YPL+ G D N G + +RFC ++N ++GKIV CE+ +
Sbjct: 351 INTFD--NQYYPLVSGRDIPN--TGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 406
Query: 373 L-AVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD 431
+++G ++ S D A SYPLP++++ + L YI S P ATI T +
Sbjct: 407 FKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILN 466
Query: 432 AMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
A AP VVSFSSRGPN T D++KPDI+ PGV+ILA+W VAP R+ FNIISG
Sbjct: 467 ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISG 523
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
TSMSCPH +G A YVK +P WSP++IKSALMTTA M++R EFAYGSGH+NP +A
Sbjct: 524 TSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKA 583
Query: 552 IDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIE 611
+ PGLVYDA E DYV FLC QGYNT +R+ITGD S+ C S GR WDLNYPSF L++
Sbjct: 584 VRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA-CTSGNTGRVWDLNYPSFGLSVS 642
Query: 612 DGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGP 671
Q F RT+T+V STY P +++ V P LSF+ +G++KSFT+ V G
Sbjct: 643 PSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS 702
Query: 672 KIAQQPIMSGAIVWEDGVHQVRSPVVIYNIL 702
+ ++S ++VW DGVH VRSP+ I +++
Sbjct: 703 --IKGFVVSASLVWSDGVHYVRSPITITSLV 731
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Cucumis melo (taxid: 3656) EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 2EC: 5 |
| >sp|Q9LLL8|XSP1_ARATH Xylem serine proteinase 1 OS=Arabidopsis thaliana GN=XSP1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 597 bits (1538), Expect = e-169, Method: Compositional matrix adjust.
Identities = 340/712 (47%), Positives = 445/712 (62%), Gaps = 20/712 (2%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
+G+RP TH ++L ++ S AKE VYSY ++FN FAAKL+ E + E E
Sbjct: 42 LGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEME 101
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFS-KGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLS 119
V+SV N K+HTT+SWDF+G K E VIIG+LDTGI P+S SF D GL
Sbjct: 102 EVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLDHGLG 161
Query: 120 PPPAKWKGICTG-ANFT-CNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGR 177
PPPAKWKG C NFT CNNKIIGA+Y+ + + SP D +GHGTHTSST AG
Sbjct: 162 PPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSSTVAGV 221
Query: 178 EVPHASYYGLAEGTARGGVPNARISMYKVCWS-DGCATADILAAFDDAIADGVDIISVSL 236
V +AS YG+A GTARG VP+AR++MYKVCW+ GCA DILA F+ AI DGV+IIS+S+
Sbjct: 222 LVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISI 281
Query: 237 GSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKF 296
G +Y D I++GSFHAM+ GILT SAGN GP +V+N PW LTVAAS IDR F
Sbjct: 282 GGPIA-DYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTF 340
Query: 297 VAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPD---IARFCAADALNS 353
++ LGNG ++ G+ I+ F SYPL+ G DAA N D +AR+C +D+L+
Sbjct: 341 KSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAK-----NTDDKYLARYCFSDSLDR 395
Query: 354 YKVEGKIVFCESLLDG--SDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411
KV+GK++ C G S I + G G I+ + D A + PAT ++ G I
Sbjct: 396 KKVKGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYR 455
Query: 412 YIRSTEYPIATIMFGETWKDAM-APKVVSFSSRGPNPITVDILKPDITAPGVDILASWSP 470
YI ST A I +T + + AP V SFSSRGPNP ++ +LKPDI APG+DILA+++
Sbjct: 456 YINSTRSASAVIQ--KTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTL 513
Query: 471 VAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMD 530
+ DT+ F I+SGTSM+CPH +G AAYVK+ HP+W+P++IKSA++T+A +
Sbjct: 514 KRSLTGLDGDTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPIS 573
Query: 531 SRKQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVC 590
R +D EFAYG G INP +A PGLVYD ++ YV FLC +GYN T + + G S C
Sbjct: 574 RRVNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSC 633
Query: 591 NSTEPGRAWD-LNYPSFSLAIEDGQ-PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDV 648
+S PG D LNYP+ L + + VF R VTNVG P+S YT P V + V
Sbjct: 634 SSIVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITV 693
Query: 649 EPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYN 700
EPQSLSFS +++SF V V ++ I+SG +VW+ H VRSP+VIY+
Sbjct: 694 EPQSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745
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Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O65351|SUBL_ARATH Subtilisin-like protease OS=Arabidopsis thaliana GN=ARA12 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 520 bits (1338), Expect = e-146, Method: Compositional matrix adjust.
Identities = 309/710 (43%), Positives = 428/710 (60%), Gaps = 50/710 (7%)
Query: 26 TLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFS 85
++S L+Y+Y + +GF+ +LT EE GVISV+P H+ ++HTTR+ F+G
Sbjct: 58 SISDSAELLYTYENAIHGFSTRLTQEEADSLMTQPGVISVLPEHRYELHTTRTPLFLGLD 117
Query: 86 KGKLSSSQEGS----VIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-TGANFT---CN 137
+ E V++G+LDTG+WPES S++D+G P P+ WKG C G NFT CN
Sbjct: 118 EHTADLFPEAGSYSDVVVGVLDTGVWPESKSYSDEGFGPIPSSWKGGCEAGTNFTASLCN 177
Query: 138 NKIIGARYY------NSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
K+IGAR++ I E + SPRD +GHGTHTSSTAAG V AS G A GT
Sbjct: 178 RKLIGARFFARGYESTMGPIDESKESRSPRDDDGHGTHTSSTAAGSVVEGASLLGYASGT 237
Query: 192 ARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAI 251
ARG P AR+++YKVCW GC ++DILAA D AIAD V+++S+SLG +Y+ D +AI
Sbjct: 238 ARGMAPRARVAVYKVCWLGGCFSSDILAAIDKAIADNVNVLSMSLGGGMS-DYYRDGVAI 296
Query: 252 GSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGL 311
G+F AM+ GIL S SAGN+GP S+SN APW TV A ++DR F A A+LGNG + G+
Sbjct: 297 GAFAAMERGILVSCSAGNAGPSSSSLSNVAPWITTVGAGTLDRDFPALAILGNGKNFTGV 356
Query: 312 SINSFD-LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD-- 368
S+ + L P I+ G+A+N + G C L KV+GKIV C+ ++
Sbjct: 357 SLFKGEALPDKLLPFIYAGNASNATNG------NLCMTGTLIPEKVKGKIVMCDRGINAR 410
Query: 369 ---GSDILAVNGLGTIMADSVFTD---LAFSYPLPATLISKENGQDILDYIRSTEYPIAT 422
G + A G+G I+A++ +A ++ LPAT + ++ G I Y+ + P A+
Sbjct: 411 VQKGDVVKAAGGVGMILANTAANGEELVADAHLLPATTVGEKAGDIIRHYVTTDPNPTAS 470
Query: 423 I-MFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481
I + G +P V +FSSRGPN IT +ILKPD+ APGV+ILA+W+ A P+ D+
Sbjct: 471 ISILGTVVGVKPSPVVAAFSSRGPNSITPNILKPDLIAPGVNILAAWTGAAGPTGLASDS 530
Query: 482 RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY--VMDSRKQEDLE- 538
R V FNIISGTSMSCPH SG AA +K+ HP WSP++I+SALMTTAY D + D+
Sbjct: 531 RRVEFNIISGTSMSCPHVSGLAALLKSVHPEWSPAAIRSALMTTAYKTYKDGKPLLDIAT 590
Query: 539 ------FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNS 592
F +G+GH++P A +PGL+YD T DY+ FLC Y + IR ++ N + C+
Sbjct: 591 GKPSTPFDHGAGHVSPTTATNPGLIYDLTTEDYLGFLCALNYTSPQIRSVSRRNYT-CDP 649
Query: 593 TEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPAS-VSVDVEPQ 651
++ DLNYPSF++ + DG Y +TRTVT+VG TY+V+ + V + VEP
Sbjct: 650 SKSYSVADLNYPSFAVNV-DGVGAYK-YTRTVTSVGGAG-TYSVKVTSETTGVKISVEPA 706
Query: 652 SLSFSAVGEQKSFTVKVTGPKIAQQPIMS---GAIVWEDGVHQVRSPVVI 698
L+F E+KS+TV T + +P S G+I W DG H V SPV I
Sbjct: 707 VLNFKEANEKKSYTVTFT--VDSSKPSGSNSFGSIEWSDGKHVVGSPVAI 754
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Serine protease. Has a substrate preference for the hydrophobic residues Phe and Ala and the basic residue Asp in the P1 position, and for Asp, Leu or Ala in the P1' position. Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|O64495|SDD1_ARATH Subtilisin-like protease SDD1 OS=Arabidopsis thaliana GN=SDD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 471 bits (1211), Expect = e-131, Method: Compositional matrix adjust.
Identities = 294/737 (39%), Positives = 412/737 (55%), Gaps = 68/737 (9%)
Query: 15 HHSMLQN-VLG---STLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHK 70
H S LQ VLG L+YSYG + GFAA+LT+ E + V++V P+H
Sbjct: 49 HLSFLQEAVLGVEEEEEEPSSRLLYSYGSAIEGFAAQLTESEAEILRYSPEVVAVRPDHV 108
Query: 71 LKIHTTRSWDFMGF----SKGKLSSSQEGS-VIIGLLDTGIWPESASFNDKGLSPPPAKW 125
L++ TT S+ F+G + G S S+ G IIG+LDTG+WPES SF+D G+ P KW
Sbjct: 109 LQVQTTYSYKFLGLDGFGNSGVWSKSRFGQGTIIGVLDTGVWPESPSFDDTGMPSIPRKW 168
Query: 126 KGICT-GANFT---CNNKIIGARYY-------NS--ENIYEVTDFHSPRDSEGHGTHTSS 172
KGIC G +F+ CN K+IGAR++ NS E+ ++ S RDS GHGTHT+S
Sbjct: 169 KGICQEGESFSSSSCNRKLIGARFFIRGHRVANSPEESPNMPREYISARDSTGHGTHTAS 228
Query: 173 TAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDII 232
T G V A+ G G ARG P A I++YKVCW +GC ++DILAA D AI D VD++
Sbjct: 229 TVGGSSVSMANVLGNGAGVARGMAPGAHIAVYKVCWFNGCYSSDILAAIDVAIQDKVDVL 288
Query: 233 SVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSI 292
S+SLG FP ++D IAIG+F AM+ GI +AGN+GP SV+N APW T+ A ++
Sbjct: 289 SLSLGG-FPIPLYDDTIAIGTFRAMERGISVICAAGNNGPIESSVANTAPWVSTIGAGTL 347
Query: 293 DRKFVAQAVLGNGIT------YPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFC 346
DR+F A L NG YPG I + + + GGD + FC
Sbjct: 348 DRRFPAVVRLANGKLLYGESLYPGKGIKNAGRE-VEVIYVTGGDKG----------SEFC 396
Query: 347 AADALNSYKVEGKIVFCESLLDGSD-----ILAVNGLGTIMADSVFT---DLAFSYPLPA 398
+L ++ GK+V C+ ++G + G+ I+A++ D + LPA
Sbjct: 397 LRGSLPREEIRGKMVICDRGVNGRSEKGEAVKEAGGVAMILANTEINQEEDSIDVHLLPA 456
Query: 399 TLISKENGQDILDYIRSTEYPIATIMFGET-WKDAMAPKVVSFSSRGPNPITVDILKPDI 457
TLI + Y+ +T P A I+FG T + AP+V FS+RGP+ ILKPD+
Sbjct: 457 TLIGYTESVLLKAYVNATVKPKARIIFGGTVIGRSRAPEVAQFSARGPSLANPSILKPDM 516
Query: 458 TAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSS 517
APGV+I+A+W P+ P D+R V+F ++SGTSMSCPH SG A +++A+PNWSP++
Sbjct: 517 IAPGVNIIAAWPQNLGPTGLPYDSRRVNFTVMSGTSMSCPHVSGITALIRSAYPNWSPAA 576
Query: 518 IKSALMTTAYVMDSRKQEDLE-------FAYGSGHINPAQAIDPGLVYDATEVDYVNFLC 570
IKSALMTTA + D + + + FA G+GH+NP +AI+PGLVY+ VDY+ +LC
Sbjct: 577 IKSALMTTADLYDRQGKAIKDGNKPAGVFAIGAGHVNPQKAINPGLVYNIQPVDYITYLC 636
Query: 571 KQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSP 630
G+ + I IT N S + LNYPS ++ + G+ + TR VTNVGSP
Sbjct: 637 TLGFTRSDILAITHKNVSCNGILRKNPGFSLNYPSIAVIFKRGKTTE-MITRRVTNVGSP 695
Query: 631 NSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTV------KVTGPKIAQQPIMSGAIV 684
NS Y+V P + V V P+ L F V + S+ V K G K+A G +
Sbjct: 696 NSIYSVNVKAPEGIKVIVNPKRLVFKHVDQTLSYRVWFVLKKKNRGGKVAS--FAQGQLT 753
Query: 685 WEDG---VHQVRSPVVI 698
W + + +VRSP+ +
Sbjct: 754 WVNSHNLMQRVRSPISV 770
|
Serine protease involved in the negative regulation of stomatal density and distribution. Positive regulator of water use efficiency (WUE). Arabidopsis thaliana (taxid: 3702) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P29141|SUBV_BACSU Minor extracellular protease vpr OS=Bacillus subtilis (strain 168) GN=vpr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 116 bits (290), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 149/586 (25%), Positives = 250/586 (42%), Gaps = 96/586 (16%)
Query: 37 YGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGS 96
Y + F+GF+ KL E+ + + V +V PN K + D S+ +S + S
Sbjct: 106 YEQVFSGFSMKLPANEIPKLLAVKDVKAVYPNVTYKTDNMKDKDVT-ISEDAVSPQMDDS 164
Query: 97 ------------------VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNN 138
+ + ++DTG+ +N L ++KG +F N+
Sbjct: 165 APYIGANDAWDLGYTGKGIKVAIIDTGV-----EYNHPDLKKNFGQYKGY----DFVDND 215
Query: 139 KIIGARYYNSENIYEVTDFHSPR-DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVP 197
Y+ + T PR ++ HGTH + T A A GT +G P
Sbjct: 216 -------YDPKE----TPTGDPRGEATDHGTHVAGTVA------------ANGTIKGVAP 252
Query: 198 NARISMYKVCWSDGCATAD-ILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHA 256
+A + Y+V G T + ++A + A+ DG D++++SLG+ + A+ A
Sbjct: 253 DATLLAYRVLGPGGSGTTENVIAGVERAVQDGADVMNLSLGNSLNNPDWATSTALD--WA 310
Query: 257 MKYGILTSNSAGNSGPDPYSVSNFAPWT----LTVAASSIDRKFVAQAVLGNGITYPGLS 312
M G++ S GNSGP+ ++V +P T ++V A+ + A G+ + +
Sbjct: 311 MSEGVVAVTSNGNSGPNGWTVG--SPGTSREAISVGATQLPLNEYA-VTFGSYSSAKVMG 367
Query: 313 INSFD----LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKV--EGKIVFCESL 366
N D LN L+ G G D F D V G I F +
Sbjct: 368 YNKEDDVKALNNKEVELVEAG------IGEAKD---FEGKDLTGKVAVVKRGSIAFVDKA 418
Query: 367 LDGSDILAVNGLGTIMADSVFTDLAFSYP---LPATLISKENGQDILDYIRSTEYPIATI 423
+ A+ G ++ +++ ++ + P +P +S E+G+ ++ +++ E
Sbjct: 419 DNAKKAGAI---GMVVYNNLSGEIEANVPGMSVPTIKLSLEDGEKLVSALKAGE---TKT 472
Query: 424 MFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRS 483
F T A+ +V FSSRGP + ++KPDI+APGV+I+++ P+ DP+
Sbjct: 473 TFKLTVSKALGEQVADFSSRGP-VMDTWMIKPDISAPGVNIVSTI-----PTHDPD--HP 524
Query: 484 VSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVM-DSRKQEDLEFAYG 542
+ GTSM+ PH +G+ A +K A P WS IK+A+M TA + DS + A G
Sbjct: 525 YGYGSKQGTSMASPHIAGAVAVIKQAKPKWSVEQIKAAIMNTAVTLKDSDGEVYPHNAQG 584
Query: 543 SGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSS 588
+G AI + Y FL + G N T T +N S
Sbjct: 585 AGSARIMNAIKADSLVSPGSYSYGTFLKENG-NETKNETFTIENQS 629
|
Not required for growth or sporulation. Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|P15292|P3P_LACLS PIII-type proteinase OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=prtP PE=1 SV=2 | Back alignment and function description |
|---|
Score = 68.6 bits (166), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 139/535 (25%), Positives = 224/535 (41%), Gaps = 102/535 (19%)
Query: 36 SYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ-- 93
SYG NGF+ K+ ++ + + GV +V K+ T + M + S+ +
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL-AKVYYPTDAKANSMANVQAVWSNYKYK 207
Query: 94 -EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIY 152
EG+V+ ++D+GI P + D LS FT K RY+NS+ Y
Sbjct: 208 GEGTVV-SVIDSGIDP---THKDMRLSDDKDVKLTKSDVEKFTDTAK--HGRYFNSKVPY 261
Query: 153 EVTDFHSPRDS-------EGHGTHTSSTAAGR---EVPHASYYGLAEGTARGGVPNARIS 202
++ D+ E HG H + + P S G+A P A++
Sbjct: 262 GF-NYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVVGVA--------PEAQLL 312
Query: 203 MYKV-CWSDGCAT---ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMK 258
KV SD AT A +++A +D+ G D++++SLGSD + EDP +A +
Sbjct: 313 AMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANE 372
Query: 259 YGILTSNSAGNSG----------PDPYSVSNF----APWT---LTVAASSIDRKFVAQAV 301
G SAGNSG D Y + + +P T T AS+ + + QAV
Sbjct: 373 SGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGSPGTSRGATTVASAENTDVITQAV 432
Query: 302 L---GNGITY--PGLSINSFDLNGISYPL------------IWGGDAANYSAGANPDIAR 344
G G+ + ++S D G S+ + G A+Y+A A IA
Sbjct: 433 TITDGTGLQLGPETIQLSSHDFTG-SFDQKKFYIVKDASGNLSKGALADYTADAKGKIAI 491
Query: 345 FCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKE 404
+ + + K + ++ + ++ VN GT + T +A + P +S
Sbjct: 492 VKRGE----FSFDDKQKYAQA-AGAAGLIIVNTDGTA---TPMTSIALTTTFPTFGLSSV 543
Query: 405 NGQDILDYIRSTEYPIATIMFGETWKDAMAP-------KVVSFSSRGPNPITVDILKPDI 457
GQ ++D++ T +P ++ T AM P K+ F+S G P++ KPDI
Sbjct: 544 TGQKLVDWV--TAHPDDSLGVKITL--AMLPNQKYTEDKMSDFTSYG--PVSNLSFKPDI 597
Query: 458 TAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN 512
TAPG +I WS + + +SGTSM+ P +GS A +K A N
Sbjct: 598 TAPGGNI---WST----------QNNNGYTNMSGTSMASPFIAGSQALLKQALNN 639
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (strain SK11) (taxid: 272622) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|P16271|P1P_LACLC PI-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prtP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 143/534 (26%), Positives = 224/534 (41%), Gaps = 100/534 (18%)
Query: 36 SYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ-- 93
SYG NGF+ K+ ++ + + GV +V K+ T + M + S+ +
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL-AKVYYPTDAKANSMANVQAVWSNYKYK 207
Query: 94 -EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIY 152
EG+V+ ++D+GI P + D LS FT K RY+NS+ Y
Sbjct: 208 GEGTVV-SVIDSGIDP---THKDMRLSDDKDVKLTKSDVEKFTDTAK--HGRYFNSKVPY 261
Query: 153 EVTDFHSPRDS-------EGHGTHTSSTAAGR---EVPHASYYGLAEGTARGGVPNARIS 202
++ D+ E HG H + + P S G+A P A++
Sbjct: 262 GF-NYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVVGVA--------PEAQLL 312
Query: 203 MYKV-CWSDGCAT---ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMK 258
KV SD AT + +++A +D+ G D++++SLGSD + EDP +A +
Sbjct: 313 AMKVFTNSDTSATTGSSTLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANE 372
Query: 259 YGILTSNSAGNSG----------PDPYSVSNF----APWT---LTVAASSIDRKFVAQAV 301
G SAGNSG D Y + + P T T AS+ + + QAV
Sbjct: 373 SGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVITQAV 432
Query: 302 L---GNGITY-PG---LSINSFDLNGISYPLIWGGDAA-NYSAGANPDIARFCAADALNS 353
G G+ PG LS N F + DA+ N S GA D ADA
Sbjct: 433 TITDGTGLQLGPGTIQLSSNDFTGSFDQKKFYVVKDASGNLSKGALAD----YTADAKGK 488
Query: 354 YKV--EGKIVFCE-----SLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENG 406
+ G++ F + + ++ VN GT + T +A + P +S G
Sbjct: 489 IAIVKRGELSFDDKQKYAQAAGAAGLIIVNNDGTA---TPVTSMALTTTFPTFGLSSVTG 545
Query: 407 QDILDYIRSTEYP-------IA-TIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDIT 458
Q ++D++ T +P IA T++ + + + K+ F+S G P++ KPDIT
Sbjct: 546 QKLVDWV--TAHPDDSLGVKIALTLVPNQKYTE---DKMSDFTSYG--PVSNLSFKPDIT 598
Query: 459 APGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN 512
APG +I WS + + +SGTSM+ P +GS A +K A N
Sbjct: 599 APGGNI---WST----------QNNNGYTNMSGTSMASPFIAGSQALLKQALNN 639
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: - |
| >sp|Q5X9R0|C5AP_STRP6 C5a peptidase OS=Streptococcus pyogenes serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 173/435 (39%), Gaps = 94/435 (21%)
Query: 164 EGHGTHTSSTAAGREVPHASY-YGLAEGTARGGVPNARISMYKVCWSDGCA--TADILAA 220
+ HGTH S +G Y L G +P A++ + +V +G A + A
Sbjct: 191 QEHGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQA 245
Query: 221 FDDAIADGVDIISVSLG-SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSG-------- 271
DA+ G +I++S G + + D +A G+ SAGN
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 272 -----PDPYSVSNF---APWTLTVAASSIDRKFVAQAVLGNG----ITYPGLSINSFDLN 319
PD Y V A TLTVA+ S D++ A + P LS N F+ N
Sbjct: 306 PLADHPD-YGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPN 364
Query: 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCES-LLDGSDILA---- 374
A +Y A AN R D V+GKI E +D D +A
Sbjct: 365 K----------AYDY-AYAN----RGMKEDDFKD--VKGKIALIERGDIDFKDKIANAKK 407
Query: 375 VNGLGTIMADSVFTDLAFSYP----LPATLISKENGQDILDYIRSTEYPIATIMFGETWK 430
+G ++ D+ P +PA IS+++G + E P TI F T K
Sbjct: 408 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKTITFNATPK 461
Query: 431 ---DAMAPKVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486
A K+ FSS G +T D +KPDI APG DIL+S + + +
Sbjct: 462 VLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVA-------------NNKY 505
Query: 487 NIISGTSMSCPHASGSAAYVK----AAHPNWSPSS----IKSALMTTAYVMDSRKQEDLE 538
+SGTSMS P +G ++ +P+ +PS K LM++A + ++ E
Sbjct: 506 AKLSGTSMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATAL----YDEDE 561
Query: 539 FAYGSGHINPAQAID 553
AY S A A+D
Sbjct: 562 KAYFSPRQQGAGAVD 576
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M6 (taxid: 301450) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
| >sp|P15293|P2P_LACLC PII-type proteinase OS=Lactococcus lactis subsp. cremoris GN=prt PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 138/539 (25%), Positives = 221/539 (41%), Gaps = 110/539 (20%)
Query: 36 SYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ-- 93
SYG NGF+ K+ ++ + + GV +V K+ T + M + S+ +
Sbjct: 149 SYGYVVNGFSTKVRVVDIPKLKQIAGVKTVTL-AKVYYPTDAKANSMANVQAVWSNYKYK 207
Query: 94 -EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIY 152
EG+V+ ++D+GI P + D LS FT K RY+NS+ Y
Sbjct: 208 GEGTVV-SVIDSGIDP---THKDMRLSDDKDVKLTKSDVEKFTDTAK--HGRYFNSKVPY 261
Query: 153 EVTDFHSPRDS-------EGHGTHTSSTAAGR---EVPHASYYGLAEGTARGGVPNARIS 202
++ D+ E HG H + + P S G+A P A++
Sbjct: 262 GF-NYADNNDTITDDTVDEQHGMHVAGIIGANGTGDDPAKSVVGVA--------PEAQLL 312
Query: 203 MYKV-CWSDGCAT---ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMK 258
KV SD AT A +++A +D+ G D++++SLGSD + EDP +A +
Sbjct: 313 AMKVFTNSDTSATTGSATLVSAIEDSAKIGADVLNMSLGSDSGNQTLEDPELAAVQNANE 372
Query: 259 YGILTSNSAGNSG----------PDPYSVSNF----APWT---LTVAASSIDRKFVAQAV 301
G SAGNSG D Y + + P T T AS+ + + QAV
Sbjct: 373 SGTAAVISAGNSGTSGSATEGVNKDYYGLQDNEMVGTPGTSRGATTVASAENTDVITQAV 432
Query: 302 L---GNGITY--PGLSINSFDLNGISYPL------------IWGGDAANYSAGANPDIAR 344
G G+ + ++S D G S+ + G A+Y+A A IA
Sbjct: 433 TITDGTGLQLGPETIQLSSNDFTG-SFDQKKFYVVKDASGNLSKGKVADYTADAKGKIAI 491
Query: 345 FCAADALNSYKVEGKIVFCE-----SLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399
G++ F + + ++ VN GT + T +A + P
Sbjct: 492 VK----------RGELTFADKQKYAQAAGAAGLIIVNNDGTA---TPVTSMALTTTFPTF 538
Query: 400 LISKENGQDILDYI-----RSTEYPIA-TIMFGETWKDAMAPKVVSFSSRGPNPITVDIL 453
+S GQ ++D++ S IA T++ + + + K+ F+S G P++
Sbjct: 539 GLSSVTGQKLVDWVAAHPDDSLGVKIALTLVPNQKYTE---DKMSDFTSYG--PVSNLSF 593
Query: 454 KPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN 512
KPDITAPG +I WS + + +SGTSM+ P +GS A +K A N
Sbjct: 594 KPDITAPGGNI---WST----------QNNNGYTNMSGTSMASPFIAGSQALLKQALNN 639
|
Protease which breaks down milk proteins during the growth of the bacteria on milk. Lactococcus lactis subsp. cremoris (taxid: 1359) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 9 EC: 6 |
| >sp|Q8NZ80|C5AP_STRP8 C5a peptidase OS=Streptococcus pyogenes serotype M18 (strain MGAS8232) GN=scpA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 65.1 bits (157), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 173/435 (39%), Gaps = 94/435 (21%)
Query: 164 EGHGTHTSSTAAGREVPHASY-YGLAEGTARGGVPNARISMYKVCWSDGCA--TADILAA 220
+ HGTH S +G Y L G +P A++ + +V +G A + A
Sbjct: 191 QEHGTHVSGILSGNAPSETKEPYRL-----EGAMPEAQLLLMRVEIVNGLADYARNYAQA 245
Query: 221 FDDAIADGVDIISVSLG-SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSG-------- 271
DA+ G +I++S G + + D +A G+ SAGN
Sbjct: 246 IRDAVNLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRL 305
Query: 272 -----PDPYSVSNF---APWTLTVAASSIDRKFVAQAVLGNG----ITYPGLSINSFDLN 319
PD Y V A TLTVA+ S D++ A + P LS N F+ N
Sbjct: 306 PLADHPD-YGVVGTPAAADSTLTVASYSPDKQLTETATVKTADQQDKEMPVLSTNRFEPN 364
Query: 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCES-LLDGSDILA---- 374
A +Y A AN R D V+GKI E +D D +A
Sbjct: 365 K----------AYDY-AYAN----RGMKEDDFKD--VKGKIALIERGDIDFKDKIANAKK 407
Query: 375 VNGLGTIMADSVFTDLAFSYP----LPATLISKENGQDILDYIRSTEYPIATIMFGETWK 430
+G ++ D+ P +PA IS+++G + E P TI F T K
Sbjct: 408 AGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDG------LLLKENPQKTITFNATPK 461
Query: 431 ---DAMAPKVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486
A K+ FSS G +T D +KPDI APG DIL+S + + +
Sbjct: 462 VLPTASGTKLSRFSSWG---LTADGNIKPDIAAPGQDILSSVA-------------NNKY 505
Query: 487 NIISGTSMSCPHASGSAAYVKA----AHPNWSPSS----IKSALMTTAYVMDSRKQEDLE 538
+SGTSMS P +G ++ +P+ +PS K LM++A + ++ E
Sbjct: 506 AKLSGTSMSAPLVAGIMGLLQKQYEIQYPDMTPSERLDLAKKVLMSSATAL----YDEDE 561
Query: 539 FAYGSGHINPAQAID 553
AY S A A+D
Sbjct: 562 KAYFSPRQQGAGAVD 576
|
This virulence factor of S.pyogenes specifically cleaves the human serum chemotaxin C5a at '68-Lys-|-Asp-69' bond near its C-terminus, destroying its ability to serve as a chemoattractant. Streptococcus pyogenes serotype M18 (taxid: 301451) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 1 EC: . EC: 1 EC: 1 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | ||||||
| 225426745 | 766 | PREDICTED: cucumisin-like [Vitis vinifer | 0.997 | 0.955 | 0.746 | 0.0 | |
| 297742616 | 732 | unnamed protein product [Vitis vinifera] | 0.997 | 1.0 | 0.746 | 0.0 | |
| 255537247 | 771 | Cucumisin precursor, putative [Ricinus c | 0.998 | 0.950 | 0.746 | 0.0 | |
| 224074782 | 789 | predicted protein [Populus trichocarpa] | 1.0 | 0.930 | 0.732 | 0.0 | |
| 147783292 | 776 | hypothetical protein VITISV_025342 [Viti | 0.991 | 0.938 | 0.666 | 0.0 | |
| 359490422 | 776 | PREDICTED: cucumisin-like [Vitis vinifer | 0.991 | 0.938 | 0.666 | 0.0 | |
| 359490217 | 790 | PREDICTED: cucumisin-like [Vitis vinifer | 0.974 | 0.905 | 0.678 | 0.0 | |
| 297741144 | 735 | unnamed protein product [Vitis vinifera] | 0.952 | 0.951 | 0.646 | 0.0 | |
| 225468610 | 773 | PREDICTED: cucumisin-like [Vitis vinifer | 0.991 | 0.941 | 0.613 | 0.0 | |
| 296084071 | 736 | unnamed protein product [Vitis vinifera] | 0.990 | 0.987 | 0.609 | 0.0 |
| >gi|225426745|ref|XP_002275807.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1141 bits (2951), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/734 (74%), Positives = 624/734 (85%), Gaps = 2/734 (0%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG RP GD P+ HHSML+ VLGST SAKESLVYSYGRSFNGFAA+L+DEEV R SE E
Sbjct: 35 MGGRPLGDEPLRPIHHSMLETVLGSTSSAKESLVYSYGRSFNGFAARLSDEEVGRLSEME 94
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV PNH LK+HTTRSWDFMGFSKG + S+EG +I+ LLDTGIWPES SFND+G
Sbjct: 95 GVVSVTPNHILKLHTTRSWDFMGFSKGTVGGSEEGEIIVALLDTGIWPESESFNDEGFGS 154
Query: 121 PPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVP 180
PP+KW G C GANFTCNNKIIGARYYNSE Y+++DF SPRDS GHGTHT+STAAGREV
Sbjct: 155 PPSKWNGTCQGANFTCNNKIIGARYYNSEGYYDISDFKSPRDSLGHGTHTASTAAGREVD 214
Query: 181 HASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDF 240
ASY+GLA+GTARG VPNARI++YKVCW GCA ADI AAFDDAIADGVDIISVSLG+DF
Sbjct: 215 GASYFGLAKGTARGAVPNARIAVYKVCWYYGCAVADIFAAFDDAIADGVDIISVSLGADF 274
Query: 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQA 300
P EY +DPIAIGSFHAMKYGILTS+SAGNSGP P +VSN+APW LTVAASSIDRKFVAQ
Sbjct: 275 PLEYLQDPIAIGSFHAMKYGILTSSSAGNSGPFPVTVSNYAPWILTVAASSIDRKFVAQV 334
Query: 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKI 360
VL NG Y GLS+NSF+LNG ++PLIWGGDAAN SAG + D +R+C D L+SYK++GKI
Sbjct: 335 VLSNGQVYTGLSVNSFELNGTTFPLIWGGDAANVSAGYSSDFSRYCLPDTLDSYKIKGKI 394
Query: 361 VFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPI 420
V C++L DGS +L +G+GTIMAD + TD AF+YPLPAT IS E+G ILDYIR+ + P+
Sbjct: 395 VLCDTLWDGSTVLLADGVGTIMAD-LITDYAFNYPLPATQISVEDGLAILDYIRTAKNPL 453
Query: 421 ATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480
ATI+F ETW D MAP VVSFSSRGPNPIT DILKPDITAPGVDILA+WSPVAPPS+ D
Sbjct: 454 ATILFSETWNDVMAPNVVSFSSRGPNPITPDILKPDITAPGVDILAAWSPVAPPSIYYLD 513
Query: 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFA 540
TRSV +NIISGTSMSCPHASG+AAYVKAAHPNWSP++IKSALMTTA+VMD RK EDLEFA
Sbjct: 514 TRSVDYNIISGTSMSCPHASGAAAYVKAAHPNWSPAAIKSALMTTAHVMDPRKHEDLEFA 573
Query: 541 YGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWD 600
YGSGHINP A DPGLVYDA+E DY++FLCKQGYNT+ +R +TGD+ SVCNSTEPGRAWD
Sbjct: 574 YGSGHINPLNATDPGLVYDASEADYISFLCKQGYNTSTLRLVTGDD-SVCNSTEPGRAWD 632
Query: 601 LNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGE 660
LNYPSFSLA+EDG I GVFTRTVTNVGSPNSTYT Y+P ++SV VEP +SFSA+GE
Sbjct: 633 LNYPSFSLAVEDGNQIMGVFTRTVTNVGSPNSTYTAGMYVPTTLSVTVEPSVISFSAIGE 692
Query: 661 QKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQKFK 720
+KSFTVKV GPKI+QQPIMSGAI W DGVH+VRSP+V+Y +LPGA +SS SM K FK
Sbjct: 693 KKSFTVKVYGPKISQQPIMSGAIWWTDGVHEVRSPLVVYTVLPGATYSSYSMSHKKPVFK 752
Query: 721 GPSMYTKNGILGRH 734
G S+Y KNGILG +
Sbjct: 753 GSSIYHKNGILGNN 766
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297742616|emb|CBI34765.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1140 bits (2950), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 548/734 (74%), Positives = 624/734 (85%), Gaps = 2/734 (0%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG RP GD P+ HHSML+ VLGST SAKESLVYSYGRSFNGFAA+L+DEEV R SE E
Sbjct: 1 MGGRPLGDEPLRPIHHSMLETVLGSTSSAKESLVYSYGRSFNGFAARLSDEEVGRLSEME 60
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV PNH LK+HTTRSWDFMGFSKG + S+EG +I+ LLDTGIWPES SFND+G
Sbjct: 61 GVVSVTPNHILKLHTTRSWDFMGFSKGTVGGSEEGEIIVALLDTGIWPESESFNDEGFGS 120
Query: 121 PPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVP 180
PP+KW G C GANFTCNNKIIGARYYNSE Y+++DF SPRDS GHGTHT+STAAGREV
Sbjct: 121 PPSKWNGTCQGANFTCNNKIIGARYYNSEGYYDISDFKSPRDSLGHGTHTASTAAGREVD 180
Query: 181 HASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDF 240
ASY+GLA+GTARG VPNARI++YKVCW GCA ADI AAFDDAIADGVDIISVSLG+DF
Sbjct: 181 GASYFGLAKGTARGAVPNARIAVYKVCWYYGCAVADIFAAFDDAIADGVDIISVSLGADF 240
Query: 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQA 300
P EY +DPIAIGSFHAMKYGILTS+SAGNSGP P +VSN+APW LTVAASSIDRKFVAQ
Sbjct: 241 PLEYLQDPIAIGSFHAMKYGILTSSSAGNSGPFPVTVSNYAPWILTVAASSIDRKFVAQV 300
Query: 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKI 360
VL NG Y GLS+NSF+LNG ++PLIWGGDAAN SAG + D +R+C D L+SYK++GKI
Sbjct: 301 VLSNGQVYTGLSVNSFELNGTTFPLIWGGDAANVSAGYSSDFSRYCLPDTLDSYKIKGKI 360
Query: 361 VFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPI 420
V C++L DGS +L +G+GTIMAD + TD AF+YPLPAT IS E+G ILDYIR+ + P+
Sbjct: 361 VLCDTLWDGSTVLLADGVGTIMAD-LITDYAFNYPLPATQISVEDGLAILDYIRTAKNPL 419
Query: 421 ATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480
ATI+F ETW D MAP VVSFSSRGPNPIT DILKPDITAPGVDILA+WSPVAPPS+ D
Sbjct: 420 ATILFSETWNDVMAPNVVSFSSRGPNPITPDILKPDITAPGVDILAAWSPVAPPSIYYLD 479
Query: 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFA 540
TRSV +NIISGTSMSCPHASG+AAYVKAAHPNWSP++IKSALMTTA+VMD RK EDLEFA
Sbjct: 480 TRSVDYNIISGTSMSCPHASGAAAYVKAAHPNWSPAAIKSALMTTAHVMDPRKHEDLEFA 539
Query: 541 YGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWD 600
YGSGHINP A DPGLVYDA+E DY++FLCKQGYNT+ +R +TGD+ SVCNSTEPGRAWD
Sbjct: 540 YGSGHINPLNATDPGLVYDASEADYISFLCKQGYNTSTLRLVTGDD-SVCNSTEPGRAWD 598
Query: 601 LNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGE 660
LNYPSFSLA+EDG I GVFTRTVTNVGSPNSTYT Y+P ++SV VEP +SFSA+GE
Sbjct: 599 LNYPSFSLAVEDGNQIMGVFTRTVTNVGSPNSTYTAGMYVPTTLSVTVEPSVISFSAIGE 658
Query: 661 QKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQKFK 720
+KSFTVKV GPKI+QQPIMSGAI W DGVH+VRSP+V+Y +LPGA +SS SM K FK
Sbjct: 659 KKSFTVKVYGPKISQQPIMSGAIWWTDGVHEVRSPLVVYTVLPGATYSSYSMSHKKPVFK 718
Query: 721 GPSMYTKNGILGRH 734
G S+Y KNGILG +
Sbjct: 719 GSSIYHKNGILGNN 732
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255537247|ref|XP_002509690.1| Cucumisin precursor, putative [Ricinus communis] gi|223549589|gb|EEF51077.1| Cucumisin precursor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1136 bits (2939), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 552/739 (74%), Positives = 630/739 (85%), Gaps = 6/739 (0%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG RP GDF THHS+L++VLGST SAKESLVYSYGRSFNGFAAKL+ EE R SE +
Sbjct: 34 MGNRPHGDFSAEITHHSILKSVLGSTSSAKESLVYSYGRSFNGFAAKLSHEEAERLSEMD 93
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
G+ISV+PNH L IHTTRSWDFMGFSK KLS SQ+G VIIGLLDTG+WPES SFND+G+ P
Sbjct: 94 GIISVMPNHMLNIHTTRSWDFMGFSKSKLSGSQQGDVIIGLLDTGVWPESESFNDEGMGP 153
Query: 121 PPAKWKGICTG-ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREV 179
P+KWKG C G NFTCNNKIIGARYYNSE+ Y TDF SPRDSEGHG+HT+STAAGREV
Sbjct: 154 APSKWKGTCQGEGNFTCNNKIIGARYYNSEDWYFDTDFKSPRDSEGHGSHTASTAAGREV 213
Query: 180 PHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239
ASY GLAEG ARG VP ARI++YKVCWS GCA ADILAAFDDAIADGVDIISVSLG+
Sbjct: 214 QGASYLGLAEGLARGAVPYARIAVYKVCWSFGCAAADILAAFDDAIADGVDIISVSLGAP 273
Query: 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ 299
+ F Y EDPIAIGSFHAM+YGILT+NSAGNSGP PY+ SN APWTLTVAAS+IDRKFVA
Sbjct: 274 WAFPYMEDPIAIGSFHAMRYGILTANSAGNSGPSPYTASNVAPWTLTVAASTIDRKFVAN 333
Query: 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGK 359
AVLG+G GLS+NSF LNG +YPLIWGGDAANYSAGA+PDIA++C A+NSY V GK
Sbjct: 334 AVLGSGKVITGLSVNSFILNG-TYPLIWGGDAANYSAGADPDIAKYCVTGAMNSYIVAGK 392
Query: 360 IVFCESLLDGSDILAVNGLGTIMADSVFT-DLAFSYPLPATLISKENGQDILDYIRSTEY 418
IVFCES+ DGS +L NG+GTIMAD ++ D AFSYPLPAT+I+ GQ IL+YIRSTE
Sbjct: 393 IVFCESIWDGSGVLLANGVGTIMADPEYSKDFAFSYPLPATVITPVEGQQILEYIRSTEN 452
Query: 419 PIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478
PIATI ETW D MAP VVSFSSRGPN I DILKPD+TAPGVDILA+WSPV+PPS+
Sbjct: 453 PIATIEVSETWTDIMAPSVVSFSSRGPNAINPDILKPDLTAPGVDILAAWSPVSPPSIYY 512
Query: 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLE 538
EDTRSV+FNIISGTSMSCPHASG+AAYVKAAHP+WSP+++KSALMTTAYVMDSRK D E
Sbjct: 513 EDTRSVNFNIISGTSMSCPHASGAAAYVKAAHPDWSPAAVKSALMTTAYVMDSRKHPDQE 572
Query: 539 FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRA 598
FAYGSGHINP A PGLVYDA+E DY+NFLCKQGYNTT +R ITGDNS++CNSTEPGRA
Sbjct: 573 FAYGSGHINPEAATKPGLVYDASEADYINFLCKQGYNTTTLRLITGDNSTICNSTEPGRA 632
Query: 599 WDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAV 658
WDLNYP++SLAIEDGQPI GVFTRTVTNVG PNSTY++ Y+P+++SV VEP LSFS +
Sbjct: 633 WDLNYPTYSLAIEDGQPIQGVFTRTVTNVGKPNSTYSISMYLPSTISVTVEPSVLSFSDI 692
Query: 659 GEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHS---SDSMPQK 715
GE+K+FTVKV+GPKI+QQ IMSGAI+W DG + VRSP+V+YNILPGA +S +++M QK
Sbjct: 693 GEKKTFTVKVSGPKISQQRIMSGAIMWNDGTYVVRSPLVVYNILPGATYSPPDTNTMQQK 752
Query: 716 NQKFKGPSMYTKNGILGRH 734
+ KF+G S+Y KNGILGR+
Sbjct: 753 SLKFEGSSVYHKNGILGRN 771
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224074782|ref|XP_002304456.1| predicted protein [Populus trichocarpa] gi|222841888|gb|EEE79435.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1133 bits (2931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 554/756 (73%), Positives = 631/756 (83%), Gaps = 22/756 (2%)
Query: 1 MGER-PQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
MGER PQGDF ASTHHSML +LGS SAK+SLVYSYGRSFNGFAAKL+DEEV + S+
Sbjct: 34 MGERRPQGDFSPASTHHSMLAGILGSYESAKKSLVYSYGRSFNGFAAKLSDEEVEKLSDM 93
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLS 119
EGV+SVIPNH LK+HTTRSWDFMGFSKGKL + EG+V+IG LDTGIWPES SFND+G+S
Sbjct: 94 EGVVSVIPNHILKLHTTRSWDFMGFSKGKLGAPLEGNVVIGFLDTGIWPESDSFNDEGMS 153
Query: 120 PPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREV 179
PPAKWKG C GANFTCNNK+IGAR+YNSEN +++TDF SPRDSEGHGTHTSSTAAGREV
Sbjct: 154 APPAKWKGKCIGANFTCNNKLIGARWYNSENFFDITDFPSPRDSEGHGTHTSSTAAGREV 213
Query: 180 PHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239
ASY+GLAEG ARGGVPNARI+MYKVCWS GC++ADILAA+DDAIADGVDIISVSLGSD
Sbjct: 214 QGASYFGLAEGAARGGVPNARIAMYKVCWSYGCSSADILAAYDDAIADGVDIISVSLGSD 273
Query: 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ 299
FPF Y EDPIAIGSFHAMK GILTSNSAGNSGP PYSVSN APWTLTVAAS+IDRKFVAQ
Sbjct: 274 FPFPYMEDPIAIGSFHAMKNGILTSNSAGNSGPYPYSVSNCAPWTLTVAASTIDRKFVAQ 333
Query: 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGK 359
VLGNG+ GLSIN+FDLNG +YPLIWGGDA N+SAG N +IA +C ALNSYKVE K
Sbjct: 334 VVLGNGLALSGLSINNFDLNGTTYPLIWGGDAVNFSAGVNTEIAGYCFPGALNSYKVERK 393
Query: 360 IVFCESLLDGSDILAVNGLGTIMADSVFT-DLAFSYPLPATLISKENGQDILDYIRSTEY 418
IV C++++ GSDIL NG+G IM+DS ++ D AFS+P+PAT+IS E+ +L+YIR+TE
Sbjct: 394 IVLCDTMVTGSDILIANGVGVIMSDSFYSVDFAFSFPVPATVISNEDRVKVLNYIRTTEN 453
Query: 419 PIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478
P ATI+ + WKD +A VVSFSSRGPNPIT DILKPDITAPGVDILA+WSPVAPPS+D
Sbjct: 454 PTATILVAQGWKDVVAASVVSFSSRGPNPITPDILKPDITAPGVDILAAWSPVAPPSIDY 513
Query: 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT------------- 525
+DTRSV+FNIISGTSMSCPH S +AAYVKA HPNWSP++IKSALMTT
Sbjct: 514 KDTRSVNFNIISGTSMSCPHTSAAAAYVKAGHPNWSPAAIKSALMTTDTSIRCPLLTHLF 573
Query: 526 ---AYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQI 582
A +MD RK DLEF+YGSG INP A++PGLVY+A+E DY+NFLCKQGYNTT +R I
Sbjct: 574 PWKATIMDPRKHVDLEFSYGSGQINPEHALNPGLVYNASEADYINFLCKQGYNTTTLRMI 633
Query: 583 TGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPA 642
TG NSSVCNST PGRAWDLNYP+F+LA+EDGQPI GVFTRTVTNVG+ STYTV YMP
Sbjct: 634 TGSNSSVCNSTTPGRAWDLNYPTFALAVEDGQPIQGVFTRTVTNVGNSYSTYTVSTYMPY 693
Query: 643 SVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGV-HQVRSPVVIYNI 701
SVS+ VEP L+FS +GE K+FTVK+ GP IAQQPIMSGAI W+DG H+VRSPVV+YNI
Sbjct: 694 SVSITVEPSVLTFSKIGEMKTFTVKLYGPVIAQQPIMSGAITWKDGNGHEVRSPVVVYNI 753
Query: 702 LPG---AVHSSDSMPQKNQKFKGPSMYTKNGILGRH 734
LPG + +S QK KF+GPSMY K GILGRH
Sbjct: 754 LPGYEYGIPTSSMTTQKTDKFEGPSMYHKTGILGRH 789
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147783292|emb|CAN72966.1| hypothetical protein VITISV_025342 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/746 (66%), Positives = 587/746 (78%), Gaps = 18/746 (2%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MGE+P G + S HHSML +VLGST SAKESL+YSYGRSFNGFAAKL+DEEV RF++ +
Sbjct: 34 MGEKPHGAVSMVSMHHSMLASVLGSTASAKESLIYSYGRSFNGFAAKLSDEEVTRFADMD 93
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV+PN L++HTTRSWDFMGF++ + S G VIIGLLDTGIWPES SF+D+G P
Sbjct: 94 GVVSVVPNSMLELHTTRSWDFMGFTQSHVRDSLGGDVIIGLLDTGIWPESESFSDEGFGP 153
Query: 121 PPAKWKGIC-TGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREV 179
PPAKWKG+C T NFTCNNKIIGARYYNS N Y D SPRDSEGHGTHT+STAAGREV
Sbjct: 154 PPAKWKGMCQTENNFTCNNKIIGARYYNSYNEYYDGDIKSPRDSEGHGTHTASTAAGREV 213
Query: 180 PHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239
AS+YGLA+G ARGG PNARI++YKVCW GCA ADILAAFDDAIADGVDIISVSLG
Sbjct: 214 AGASFYGLAQGLARGGYPNARIAVYKVCWVRGCAAADILAAFDDAIADGVDIISVSLGFT 273
Query: 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ 299
FP YFED IAIGSFHAM GILTS SAGN GP VSN++PW+LTVAASSIDRKFV++
Sbjct: 274 FPEPYFEDVIAIGSFHAMGQGILTSTSAGNDGPWLGWVSNYSPWSLTVAASSIDRKFVSK 333
Query: 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGK 359
VLGNG + G+ IN+ +LNG +YPLIWGGDAAN SA P + C L+S KV+GK
Sbjct: 334 LVLGNGQIFSGIVINNLELNG-TYPLIWGGDAANVSAQETPLSSADCLPGDLDSRKVKGK 392
Query: 360 IVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYP 419
IV CE L DGS ++ G+G IM F D AF++PLPATL+ +++ +L Y R ++ P
Sbjct: 393 IVLCEFLWDGSGVIMAGGVGIIMPAWYFNDFAFTFPLPATLLRRQDMDKVLQYARFSKNP 452
Query: 420 IATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479
IATI+ GET KD MAP V SFSSRGPNPI+ DILKPD+TAPGVDILA+WSP+ PS
Sbjct: 453 IATILVGETRKDVMAPIVASFSSRGPNPISPDILKPDLTAPGVDILAAWSPIVSPSEYEH 512
Query: 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEF 539
DTR+ +NIISGTSMSCPHASG+AAYVK+ HP+WSP++IKSALMTTAYVMD+RK ED EF
Sbjct: 513 DTRTAQYNIISGTSMSCPHASGAAAYVKSIHPSWSPAAIKSALMTTAYVMDTRKNEDKEF 572
Query: 540 AYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAW 599
AYGSGHINP +A+DPGL+Y+ ++ DY+NFLCKQGYNT+ +R ITGD+ SVCNST+PGRAW
Sbjct: 573 AYGSGHINPVKAVDPGLIYNTSKADYINFLCKQGYNTSTLRLITGDD-SVCNSTKPGRAW 631
Query: 600 DLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVG 659
DLNYPSFSLAIEDGQ I G+F+RTVTNVGSPNSTY YMP S+ ++VEP LSFSA+G
Sbjct: 632 DLNYPSFSLAIEDGQDIMGIFSRTVTNVGSPNSTYHASVYMPNSIEIEVEPPVLSFSAIG 691
Query: 660 EQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQK- 718
E+KSFTV+V GP+I QPI+SGAI+W+DGVH VR+P+ +Y +LP +V SS P K K
Sbjct: 692 EKKSFTVRVYGPQINMQPIISGAILWKDGVHVVRAPLAVYTVLP-SVTSSYRNPSKQTKR 750
Query: 719 -------------FKGPSMYTKNGIL 731
KG S+Y KNGI
Sbjct: 751 PNLKASSSMKKSDLKGSSIYYKNGIF 776
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490422|ref|XP_003634085.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 497/746 (66%), Positives = 586/746 (78%), Gaps = 18/746 (2%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MGE+P G + S HHSML +VLGST SAKESL+YSYGRSFNGFAAKL+DEEV RF++ +
Sbjct: 34 MGEKPHGAVSMVSMHHSMLASVLGSTASAKESLIYSYGRSFNGFAAKLSDEEVTRFADMD 93
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV+PN L++HTTRSWDFMGF++ + S G VIIGLLDTGIWPES SF+D+G P
Sbjct: 94 GVVSVVPNSMLELHTTRSWDFMGFTQSHVRDSLGGDVIIGLLDTGIWPESESFSDEGFGP 153
Query: 121 PPAKWKGIC-TGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREV 179
PPAKWKG+C T NFTCNNKIIGARYYNS N Y D SPRDSEGHGTHT+STAAGREV
Sbjct: 154 PPAKWKGMCQTENNFTCNNKIIGARYYNSYNEYYDGDIKSPRDSEGHGTHTASTAAGREV 213
Query: 180 PHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239
AS+YGLA+G ARGG PNARI++YKVCW GCA ADILAAFDDAIADGVDIISVSLG
Sbjct: 214 AGASFYGLAQGLARGGYPNARIAVYKVCWVRGCAAADILAAFDDAIADGVDIISVSLGFT 273
Query: 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ 299
FP YFED IAIGSFHAM GILTS SAGN GP VSN++PW+LTVAASSIDRKFV++
Sbjct: 274 FPEPYFEDVIAIGSFHAMGQGILTSTSAGNDGPWLGWVSNYSPWSLTVAASSIDRKFVSK 333
Query: 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGK 359
VLGNG + G+ IN+ +LNG +YPLIWGGDAAN SA P + C L+S KV+GK
Sbjct: 334 LVLGNGQIFSGIVINNLELNG-TYPLIWGGDAANVSAQETPLSSADCLPGDLDSRKVKGK 392
Query: 360 IVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYP 419
IV CE L DGS ++ G+G IM F D AF++PLPATL+ +++ +L Y R ++ P
Sbjct: 393 IVLCEFLWDGSGVIMAGGVGIIMPAWYFNDFAFTFPLPATLLRRQDMDKVLQYARFSKNP 452
Query: 420 IATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479
IATI+ GET KD MAP V SFSSRGPNPI+ DILKPD+TAPGVDILA+WSP+ PS
Sbjct: 453 IATILVGETRKDVMAPIVASFSSRGPNPISPDILKPDLTAPGVDILAAWSPIVSPSEYEH 512
Query: 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEF 539
DTR+ +NIISGTSMSCPHASG+AAYVK+ HP+WSP++IKSALMTTAYVMD+RK ED EF
Sbjct: 513 DTRTAQYNIISGTSMSCPHASGAAAYVKSIHPSWSPAAIKSALMTTAYVMDTRKNEDKEF 572
Query: 540 AYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAW 599
AYGSGHINP +A+DPGL+Y+ ++ DY+NFLCKQGYNT+ +R ITGD+ SVCNST+PGRAW
Sbjct: 573 AYGSGHINPVKAVDPGLIYNTSKADYINFLCKQGYNTSTLRLITGDD-SVCNSTKPGRAW 631
Query: 600 DLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVG 659
DLNYPSFSLAIEDGQ I G+F+RTVTNVGSPNSTY YMP S+ ++VEP LSFSA+G
Sbjct: 632 DLNYPSFSLAIEDGQDIMGIFSRTVTNVGSPNSTYHASVYMPNSIEIEVEPPVLSFSAIG 691
Query: 660 EQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQK- 718
E+KSFTV+V GP+I QPI+SGAI+W DGVH VR+P+ +Y +LP +V SS P K K
Sbjct: 692 EKKSFTVRVYGPQINMQPIISGAILWTDGVHVVRAPLAVYTVLP-SVTSSYRNPSKQTKR 750
Query: 719 -------------FKGPSMYTKNGIL 731
KG S+Y KNGI
Sbjct: 751 PNLKASSSMKKSDLKGSSIYYKNGIF 776
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359490217|ref|XP_002262979.2| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 996 bits (2576), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/719 (67%), Positives = 577/719 (80%), Gaps = 4/719 (0%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MGE+P G + S HHSML +VLGST SAKESL+YSYGRSFNGFAAKL+DEEV RF++ +
Sbjct: 34 MGEKPHGAVSMVSMHHSMLASVLGSTASAKESLIYSYGRSFNGFAAKLSDEEVTRFADMD 93
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV+PN L++HTTRSWDFMGF++ + S G VIIGLLDTGIWPES SF+D+G P
Sbjct: 94 GVVSVVPNSMLELHTTRSWDFMGFTQSHVRDSLGGDVIIGLLDTGIWPESESFSDEGFGP 153
Query: 121 PPAKWKGIC-TGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREV 179
PPAKWKG+C T NFTCNNKIIGARYYNS N Y D SPRDSEGHGTHT+STAAGREV
Sbjct: 154 PPAKWKGMCQTENNFTCNNKIIGARYYNSYNEYYDGDIKSPRDSEGHGTHTASTAAGREV 213
Query: 180 PHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239
AS+YGLA+G ARGG PNARI++YKVCW GCA ADILAAFDDAIADGVDIISVSLG
Sbjct: 214 AGASFYGLAQGLARGGYPNARIAVYKVCWVRGCAAADILAAFDDAIADGVDIISVSLGLT 273
Query: 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ 299
FP YFED IAIGSFHAM GILTS SAGN GP VSN++PW+LTVAASSIDRKFV++
Sbjct: 274 FPEPYFEDVIAIGSFHAMGQGILTSTSAGNDGPWLGWVSNYSPWSLTVAASSIDRKFVSK 333
Query: 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGK 359
VLGNG + G+ IN+ +LNG +YPLIWGGDAAN SA P + C L+S KV+GK
Sbjct: 334 LVLGNGQIFSGIVINNLELNG-TYPLIWGGDAANVSAQETPLSSADCLPGDLDSRKVKGK 392
Query: 360 IVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYP 419
IV CE L DGS ++ G+G IM F D AF++PLPATL+ +++ +L Y R ++ P
Sbjct: 393 IVLCEFLWDGSGVIMAGGVGIIMPAWYFNDFAFTFPLPATLLRRQDMDKVLQYARFSKNP 452
Query: 420 IATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479
IATI+ GET KD MAP V SFSSRGPNPI+ DILKPD+TAPGVDILA+WSP+ PS
Sbjct: 453 IATILVGETRKDVMAPIVASFSSRGPNPISPDILKPDLTAPGVDILAAWSPIVSPSEYER 512
Query: 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEF 539
DTR+ +NIISGTSMSCPHASG+AAYVK+ HP+WSP++IKSALMTTAYVMD+RK ED EF
Sbjct: 513 DTRTAQYNIISGTSMSCPHASGAAAYVKSIHPSWSPAAIKSALMTTAYVMDTRKNEDKEF 572
Query: 540 AYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAW 599
AYGSGHINP +A+DPGL+Y+ ++ DY+NFLCKQGYNT+ +R ITGD+ SVCNST+PGRAW
Sbjct: 573 AYGSGHINPVKAVDPGLIYNTSKPDYINFLCKQGYNTSTLRLITGDD-SVCNSTKPGRAW 631
Query: 600 DLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVG 659
DLNYPSFSLAIEDG I G+F+RTVTNVGSPNSTY YMP S+ ++VEP LSFSA+G
Sbjct: 632 DLNYPSFSLAIEDGLDIMGIFSRTVTNVGSPNSTYHASVYMPNSIEIEVEPPVLSFSAIG 691
Query: 660 EQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQK 718
E+KSFTV+V GP+I QPI+SGAI+W+DGVH VR+P+ +Y +LP +V SS P K K
Sbjct: 692 EKKSFTVRVYGPQINMQPIISGAILWKDGVHVVRAPLAVYTVLP-SVTSSYGNPSKQTK 749
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297741144|emb|CBI31875.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 925 bits (2390), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 471/728 (64%), Positives = 555/728 (76%), Gaps = 29/728 (3%)
Query: 19 LQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRS 78
L + T SAKESL+YSYGRSFNGFAAKL+DEEV RF++ +GV+SV+PN L++HTTRS
Sbjct: 22 LMELFQCTASAKESLIYSYGRSFNGFAAKLSDEEVTRFADMDGVVSVVPNSMLELHTTRS 81
Query: 79 WDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-TGANFTCN 137
WDFMGF++ + S G VIIGLLDTGIWPES SF+D+G PPPAKWKG+C T NFTCN
Sbjct: 82 WDFMGFTQSHVRDSLGGDVIIGLLDTGIWPESESFSDEGFGPPPAKWKGMCQTENNFTCN 141
Query: 138 NKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVP 197
NKIIGARYYNS N Y D SPRDSEGHGTHT+STAAGREV AS+YGLA+G ARGG P
Sbjct: 142 NKIIGARYYNSYNEYYDGDIKSPRDSEGHGTHTASTAAGREVAGASFYGLAQGLARGGYP 201
Query: 198 NARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAM 257
NARI++YKVCW GCA ADILAAFDDAIADGVDIISVSLG FP YFED IAIGSFHAM
Sbjct: 202 NARIAVYKVCWVRGCAAADILAAFDDAIADGVDIISVSLGFTFPEPYFEDVIAIGSFHAM 261
Query: 258 KYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317
GILTS SAGN GP VSN++PW+LTVAASSIDRKFV++ VLGNG + G+ IN+ +
Sbjct: 262 GQGILTSTSAGNDGPWLGWVSNYSPWSLTVAASSIDRKFVSKLVLGNGQIFSGIVINNLE 321
Query: 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNG 377
LNG +YPLIWGGDAAN SA P + C L+S KV+GKIV CE L DGSD
Sbjct: 322 LNG-TYPLIWGGDAANVSAQETPLSSADCLPGDLDSRKVKGKIVLCEFLWDGSD------ 374
Query: 378 LGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKV 437
+ + ++F + + I++ I+ I PIATI+ GET KD MAP V
Sbjct: 375 FPSKQSPNLFPNYHSHFH-----ITENATVSIILIITFFRNPIATILVGETRKDVMAPIV 429
Query: 438 VSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCP 497
SFSSRGPNPI+ DILKPD+TAPGVDILA+WSP+ PS DTR+ +NIISGTSMSCP
Sbjct: 430 ASFSSRGPNPISPDILKPDLTAPGVDILAAWSPIVSPSEYEHDTRTAQYNIISGTSMSCP 489
Query: 498 HASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLV 557
HASG+AAYVK+ HP+WSP++IKSALMTTAYVMD+RK ED EFAYGSGHINP +A+DPGL+
Sbjct: 490 HASGAAAYVKSIHPSWSPAAIKSALMTTAYVMDTRKNEDKEFAYGSGHINPVKAVDPGLI 549
Query: 558 YDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIY 617
Y+ ++ DY+NFLCKQGYNT+ +R ITGD+ SVCNST+PGRAWDLNYPSFSLAIEDGQ I
Sbjct: 550 YNTSKADYINFLCKQGYNTSTLRLITGDD-SVCNSTKPGRAWDLNYPSFSLAIEDGQDIM 608
Query: 618 GVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQP 677
G+F+RTVTNVGSPNSTY YMP S+ ++VEP LSFSA+GE+KSFTV+V GP+I QP
Sbjct: 609 GIFSRTVTNVGSPNSTYHASVYMPNSIEIEVEPPVLSFSAIGEKKSFTVRVYGPQINMQP 668
Query: 678 IMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQKNQK--------------FKGPS 723
I+SGAI+W DGVH VR+P+ +Y +LP +V SS P K K KG S
Sbjct: 669 IISGAILWTDGVHVVRAPLAVYTVLP-SVTSSYRNPSKQTKRPNLKASSSMKKSDLKGSS 727
Query: 724 MYTKNGIL 731
+Y KNGI
Sbjct: 728 IYYKNGIF 735
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225468610|ref|XP_002264496.1| PREDICTED: cucumisin-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 914 bits (2361), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/735 (61%), Positives = 562/735 (76%), Gaps = 7/735 (0%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG+ P+GD VASTHH+ML VLGS+ AKESL++SYGRSFNGF A+L+DEEVAR ++ E
Sbjct: 37 MGDLPKGDASVASTHHNMLVEVLGSSSLAKESLLHSYGRSFNGFVARLSDEEVARIADME 96
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV PN K+++HTTRSWDFM F + + S EG VIIG+LDTGIWPESASF D+G P
Sbjct: 97 GVVSVFPNTKVQLHTTRSWDFMSFPEPPMGS-YEGDVIIGMLDTGIWPESASFRDEGFGP 155
Query: 121 PPAKWKGIC-TGANFTCNNKIIGARYYNSENIYE-VTDFHSPRDSEGHGTHTSSTAAGRE 178
PPAKWKGIC T NFTCNNKIIGAR+Y+++N+ + + D SPRD+ GHG+HT+STAAGR
Sbjct: 156 PPAKWKGICQTENNFTCNNKIIGARFYDTDNLADPLRDTKSPRDTLGHGSHTASTAAGRA 215
Query: 179 VPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGS 238
V +ASYYG+A G ARGGVPNAR+++YKVCW GC+ ADILAAFDDAIADGVDI+S+SLGS
Sbjct: 216 VENASYYGIASGVARGGVPNARLAVYKVCWGGGCSPADILAAFDDAIADGVDILSISLGS 275
Query: 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVA 298
+ P Y ++P+AIGSFHAMK GILTS SAGN GP +SN+APW LTVAAS+IDR FV
Sbjct: 276 EMPAAYNKEPVAIGSFHAMKNGILTSCSAGNKGPYRRQISNYAPWALTVAASTIDRSFVT 335
Query: 299 QAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEG 358
+ VLGNG T G S+N+F L+G S+PL++ GDAAN ++ +PDIA C L++ K G
Sbjct: 336 KVVLGNGQTILGTSLNNFHLDGTSFPLVYSGDAANITSAMSPDIAGICFPGTLSTLKTRG 395
Query: 359 KIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEY 418
+V C L D S + +G IMA S F ++AF++P+PA +IS ++ ++DYIR+TEY
Sbjct: 396 AVVLCNILSDSSGAFSAEAVGLIMA-SPFDEIAFAFPVPAVVISYDDRLKLIDYIRTTEY 454
Query: 419 PIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478
P ATI+ ET D MAP VVSFSSRGPNPI+ DILKPD+TAPG +ILA+WSP S+
Sbjct: 455 PTATILSTETTTDVMAPTVVSFSSRGPNPISPDILKPDVTAPGSNILAAWSPRGLSSVWV 514
Query: 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLE 538
D R V + IISGTSMSCPH +G+A+Y+KAAHP WSP++IKSALMTTA +MD RK ED E
Sbjct: 515 FDDRQVDYYIISGTSMSCPHVTGAASYIKAAHPTWSPAAIKSALMTTATIMDPRKNEDAE 574
Query: 539 FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRA 598
FAYGSGHINP +A+DPGLV+DA+E DYV+FLCKQGYNTT +R ITGD SSVC S EPG+A
Sbjct: 575 FAYGSGHINPLKAVDPGLVFDASEADYVDFLCKQGYNTTHLRMITGD-SSVCPSNEPGKA 633
Query: 599 WDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAV 658
WDLNYPSF L++ DG+P+ + RTVTN GSPNSTY MP S +V VEP L+FS V
Sbjct: 634 WDLNYPSFGLSLLDGEPVQASYLRTVTNFGSPNSTYHSNITMPPSFAVLVEPPVLTFSEV 693
Query: 659 GEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQK--N 716
GE+KSF V +TG I Q P++SGAI W DG H VR+P+ ++N P D P+K +
Sbjct: 694 GEKKSFKVIITGSPIVQVPVISGAIEWTDGNHVVRTPIAVFNNKPYVFAPLDDYPEKKNS 753
Query: 717 QKFKGPSMYTKNGIL 731
F+G ++Y +NGI
Sbjct: 754 HPFQGSTIYHQNGIF 768
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296084071|emb|CBI24459.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 904 bits (2337), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/735 (60%), Positives = 560/735 (76%), Gaps = 8/735 (1%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG+ P+GD VASTHH+ML VLG ++ ESL++SYGRSFNGF A+L+DEEVAR ++ E
Sbjct: 1 MGDLPKGDASVASTHHNMLVEVLGRSV-IIESLLHSYGRSFNGFVARLSDEEVARIADME 59
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSP 120
GV+SV PN K+++HTTRSWDFM F + + S EG VIIG+LDTGIWPESASF D+G P
Sbjct: 60 GVVSVFPNTKVQLHTTRSWDFMSFPEPPMGS-YEGDVIIGMLDTGIWPESASFRDEGFGP 118
Query: 121 PPAKWKGIC-TGANFTCNNKIIGARYYNSENIYE-VTDFHSPRDSEGHGTHTSSTAAGRE 178
PPAKWKGIC T NFTCNNKIIGAR+Y+++N+ + + D SPRD+ GHG+HT+STAAGR
Sbjct: 119 PPAKWKGICQTENNFTCNNKIIGARFYDTDNLADPLRDTKSPRDTLGHGSHTASTAAGRA 178
Query: 179 VPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGS 238
V +ASYYG+A G ARGGVPNAR+++YKVCW GC+ ADILAAFDDAIADGVDI+S+SLGS
Sbjct: 179 VENASYYGIASGVARGGVPNARLAVYKVCWGGGCSPADILAAFDDAIADGVDILSISLGS 238
Query: 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVA 298
+ P Y ++P+AIGSFHAMK GILTS SAGN GP +SN+APW LTVAAS+IDR FV
Sbjct: 239 EMPAAYNKEPVAIGSFHAMKNGILTSCSAGNKGPYRRQISNYAPWALTVAASTIDRSFVT 298
Query: 299 QAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEG 358
+ VLGNG T G S+N+F L+G S+PL++ GDAAN ++ +PDIA C L++ K G
Sbjct: 299 KVVLGNGQTILGTSLNNFHLDGTSFPLVYSGDAANITSAMSPDIAGICFPGTLSTLKTRG 358
Query: 359 KIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEY 418
+V C L D S + +G IMA S F ++AF++P+PA +IS ++ ++DYIR+TEY
Sbjct: 359 AVVLCNILSDSSGAFSAEAVGLIMA-SPFDEIAFAFPVPAVVISYDDRLKLIDYIRTTEY 417
Query: 419 PIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478
P ATI+ ET D MAP VVSFSSRGPNPI+ DILKPD+TAPG +ILA+WSP S+
Sbjct: 418 PTATILSTETTTDVMAPTVVSFSSRGPNPISPDILKPDVTAPGSNILAAWSPRGLSSVWV 477
Query: 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLE 538
D R V + IISGTSMSCPH +G+A+Y+KAAHP WSP++IKSALMTTA +MD RK ED E
Sbjct: 478 FDDRQVDYYIISGTSMSCPHVTGAASYIKAAHPTWSPAAIKSALMTTATIMDPRKNEDAE 537
Query: 539 FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRA 598
FAYGSGHINP +A+DPGLV+DA+E DYV+FLCKQGYNTT +R ITGD SSVC S EPG+A
Sbjct: 538 FAYGSGHINPLKAVDPGLVFDASEADYVDFLCKQGYNTTHLRMITGD-SSVCPSNEPGKA 596
Query: 599 WDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAV 658
WDLNYPSF L++ DG+P+ + RTVTN GSPNSTY MP S +V VEP L+FS V
Sbjct: 597 WDLNYPSFGLSLLDGEPVQASYLRTVTNFGSPNSTYHSNITMPPSFAVLVEPPVLTFSEV 656
Query: 659 GEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMPQK--N 716
GE+KSF V +TG I Q P++SGAI W DG H VR+P+ ++N P D P+K +
Sbjct: 657 GEKKSFKVIITGSPIVQVPVISGAIEWTDGNHVVRTPIAVFNNKPYVFAPLDDYPEKKNS 716
Query: 717 QKFKGPSMYTKNGIL 731
F+G ++Y +NGI
Sbjct: 717 HPFQGSTIYHQNGIF 731
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 734 | ||||||
| TAIR|locus:2168524 | 693 | AT5G59190 "AT5G59190" [Arabido | 0.935 | 0.991 | 0.469 | 9.1e-171 | |
| TAIR|locus:2153291 | 736 | SBT4.12 "AT5G59090" [Arabidops | 0.923 | 0.921 | 0.470 | 2e-166 | |
| TAIR|locus:2102792 | 738 | AT3G46840 "AT3G46840" [Arabido | 0.931 | 0.926 | 0.477 | 3e-165 | |
| TAIR|locus:2102807 | 736 | AT3G46850 "AT3G46850" [Arabido | 0.934 | 0.932 | 0.465 | 5.5e-164 | |
| TAIR|locus:2168434 | 732 | SBT4.13 "AT5G59120" [Arabidops | 0.922 | 0.924 | 0.465 | 9e-164 | |
| TAIR|locus:2144583 | 766 | AT5G03620 "AT5G03620" [Arabido | 0.944 | 0.904 | 0.471 | 3.5e-162 | |
| TAIR|locus:2153296 | 741 | AT5G59100 "AT5G59100" [Arabido | 0.937 | 0.928 | 0.458 | 3.5e-162 | |
| TAIR|locus:2154528 | 713 | AT5G58840 "AT5G58840" [Arabido | 0.433 | 0.446 | 0.528 | 6.6e-162 | |
| TAIR|locus:2126896 | 749 | XSP1 "AT4G00230" [Arabidopsis | 0.945 | 0.926 | 0.466 | 2.5e-159 | |
| TAIR|locus:2154513 | 701 | AT5G58830 "AT5G58830" [Arabido | 0.429 | 0.449 | 0.508 | 3.8e-157 |
| TAIR|locus:2168524 AT5G59190 "AT5G59190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1660 (589.4 bits), Expect = 9.1e-171, P = 9.1e-171
Identities = 333/709 (46%), Positives = 461/709 (65%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
MG P+ + S H S+LQ ++G T++A LV SY RSFNGFAA L+ E + +
Sbjct: 1 MGTLPEIKYSPPSHHLSILQKLVG-TIAASHLLVRSYKRSFNGFAANLSQAESQKLQNMK 59
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFS-KGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLS 119
V+SV P+ ++ TTRSWDF+GF K + S +E VI+G++D+GIWPES SF+D+G
Sbjct: 60 EVVSVFPSKSHELTTTRSWDFVGFGEKARRESVKESDVIVGVIDSGIWPESESFDDEGFG 119
Query: 120 PPPAKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGRE 178
PPP KWKG C G F CNNK+IGAR+YN + D S RD EGHGTHT+STAAG
Sbjct: 120 PPPKKWKGSCKGGLKFACNNKLIGARFYN-----KFAD--SARDEEGHGTHTASTAAGNA 172
Query: 179 VPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGS 238
V AS+YGLA+GTARGGVP+ARI+ YKVC++ C GVD+IS+S+ +
Sbjct: 173 VQAASFYGLAQGTARGGVPSARIAAYKVCFNR-CNDVDILAAFDDAIADGVDVISISISA 231
Query: 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVA 298
D+ +AIGSFHAM GI+T+ SAGN+GPD SV+N +PW +TVAAS DR+F+
Sbjct: 232 DYVSNLLNASVAIGSFHAMMRGIITAGSAGNNGPDQGSVANVSPWMITVAASGTDRQFID 291
Query: 299 QAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEG 358
+ VLGNG G+S+N+F+LNG +P+++G N S + A +C++ ++S V+G
Sbjct: 292 RVVLGNGKALTGISVNTFNLNGTKFPIVYG---QNVSRNCSQAQAGYCSSGCVDSELVKG 348
Query: 359 KIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEY 418
KIV C+ L + +G I+ +++ D AF P PA+ + E+ + I YI S E
Sbjct: 349 KIVLCDDFLGYREAYLAGAIGVIVQNTLLPDSAFVVPFPASSLGFEDYKSIKSYIESAEP 408
Query: 419 PIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS--L 476
P A I+ E D AP V SFSSRGP+ + ++LKPD++APG++ILA++SPVA PS L
Sbjct: 409 PQAEILRTEEIVDREAPYVPSFSSRGPSFVIQNLLKPDVSAPGLEILAAFSPVASPSSFL 468
Query: 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQED 536
+PED RSV ++++SGTSM+CPH +G AAYVK+ HP+WSPS+IKSA+MTTA M+ +K +
Sbjct: 469 NPEDKRSVRYSVMSGTSMACPHVAGVAAYVKSFHPDWSPSAIKSAIMTTATPMNLKKNPE 528
Query: 537 LEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPG 596
EFAYGSG INP +A DPGLVY+ DY+ LC +G+++T + +G N + TE
Sbjct: 529 QEFAYGSGQINPTKASDPGLVYEVETEDYLKMLCAEGFDSTTLTTTSGQNVTCSERTE-- 586
Query: 597 RAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTY--TVRPYMPASVSVDVEPQSLS 654
DLNYP+ + + P F RTVTNVG PNSTY +V P P + + +EP+ L
Sbjct: 587 -VKDLNYPTMTTFVSSLDPFNVTFKRTVTNVGFPNSTYKASVVPLQP-ELQISIEPEILR 644
Query: 655 FSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYNILP 703
F + E+KSF V ++G ++ +S ++VW DG H VRSP+V Y+I P
Sbjct: 645 FGFLEEKKSFVVTISGKELKDGSFVSSSVVWSDGSHSVRSPIVAYSIQP 693
|
|
| TAIR|locus:2153291 SBT4.12 "AT5G59090" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1619 (575.0 bits), Expect = 2.0e-166, P = 2.0e-166
Identities = 331/703 (47%), Positives = 446/703 (63%)
Query: 6 QGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISV 65
+ D+ S H S+LQ V G + S + LV SY RSFNGFAA+LT+ E +E EGV+SV
Sbjct: 43 RADYIPTSDHMSILQQVTGES-SIEGRLVRSYKRSFNGFAARLTESERTLIAEIEGVVSV 101
Query: 66 IPNHKLKIHTTRSWDFMGFSKGKLSSSQ---EGSVIIGLLDTGIWPESASFNDKGLSPPP 122
PN L++HTT SWDFMG +GK + E IIG++DTGIWPES SF+DKG PPP
Sbjct: 102 FPNKILQLHTTTSWDFMGVKEGKNTKRNLAIESDTIIGVIDTGIWPESKSFSDKGFGPPP 161
Query: 123 AKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPH 181
KWKG+C+G NFTCNNK+IGAR Y SE RD+ GHGTHT+STAAG V
Sbjct: 162 KKWKGVCSGGKNFTCNNKLIGARDYTSEGT---------RDTSGHGTHTASTAAGNAVKD 212
Query: 182 ASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFP 241
S++G+ GT RGGVP +RI+ YKVC GC GVD+I++S+G FP
Sbjct: 213 TSFFGIGNGTVRGGVPASRIAAYKVCTDSGCSSEALLSSFDDAIADGVDLITISIGFQFP 272
Query: 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAV 301
+ +DPIAIG+FHAM GILT +SAGNSGP P +VS+ APW TVAAS+ +R F+ + V
Sbjct: 273 SIFEDDPIAIGAFHAMAKGILTVSSAGNSGPKPTTVSHVAPWIFTVAASTTNRGFITKVV 332
Query: 302 LGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIV 361
LGNG T G S+N+FD+ G YPL++G AA S+ + A CA LN +V+GKI+
Sbjct: 333 LGNGKTLAGRSVNAFDMKGKKYPLVYGKSAA--SSACDAKTAALCAPACLNKSRVKGKIL 390
Query: 362 FCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIA 421
C G I G I+ S D+AF++ LPA+ + ++ + ++ YI S + P A
Sbjct: 391 VCGGP-SGYKIAKSVGAIAIIDKSPRPDVAFTHHLPASGLKAKDFKSLVSYIESQDSPQA 449
Query: 422 TIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481
++ ET + +P + SFSSRGPN I VDILKPDITAPGV+ILA++SP PS D DT
Sbjct: 450 AVLKTETIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAFSPNGEPSED--DT 507
Query: 482 RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQ--EDLEF 539
R V +++ SGTSM+CPH +G AAYVK +P WSPS I+SA+MTTA+ + ++ + EF
Sbjct: 508 RRVKYSVFSGTSMACPHVAGVAAYVKTFYPRWSPSMIQSAIMTTAWPVKAKGRGIASTEF 567
Query: 540 AYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAW 599
AYG+GH++P A++PGLVY+ + D++ FLC Y + ++ I+GD C+
Sbjct: 568 AYGAGHVDPMAALNPGLVYELDKADHIAFLCGMNYTSKTLKIISGDTVK-CSKKNKILPR 626
Query: 600 DLNYPSFSLAIEDGQPIYGV-FTRTVTNVGSPNSTYTVRPYMP--ASVSVDVEPQSLSFS 656
+LNYPS S + + V F RT+TNVG+PNSTY + + +S+ V P L F
Sbjct: 627 NLNYPSMSAKLSGTDSTFSVTFNRTLTNVGTPNSTYKSKVVAGHGSKLSIKVTPSVLYFK 686
Query: 657 AVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIY 699
V E++SF+V VTG + + S ++W DG H VRSP+V+Y
Sbjct: 687 TVNEKQSFSVTVTGSDVDSEVPSSANLIWSDGTHNVRSPIVVY 729
|
|
| TAIR|locus:2102792 AT3G46840 "AT3G46840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1608 (571.1 bits), Expect = 3.0e-165, P = 3.0e-165
Identities = 340/712 (47%), Positives = 460/712 (64%)
Query: 1 MGERP-QGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
MG P + D+ S H S+LQ+V G + S ++ LV +Y RSFNGFAA+LT E +
Sbjct: 39 MGALPARVDYMPMSHHTSILQDVTGES-SIEDRLVRNYKRSFNGFAARLTKSEREILASM 97
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ---EGSVIIGLLDTGIWPESASFNDK 116
+ V+SV PN KLK+ TT SW+FMG + K + E IIG++D+GI+PES SF+ K
Sbjct: 98 DEVVSVFPNKKLKLQTTTSWNFMGLKESKRTKRNTIIESDTIIGVIDSGIYPESDSFSGK 157
Query: 117 GLSPPPAKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDF-HSPRDSEGHGTHTSSTA 174
G PPP KWKG+C G NFT NNK+IGARYY + + F S RD GHG+HT+STA
Sbjct: 158 GFGPPPKKWKGVCKGGKNFTWNNKLIGARYYTPK----LEGFPESARDYMGHGSHTASTA 213
Query: 175 AGREVPHASYYGLAEGTARGGVPNARISMYKVC--WSDGCXXXXXXXXXXXXXXXGVDII 232
AG V H S+YGL GTARGGVP ARI++YKVC DGC VDII
Sbjct: 214 AGNAVKHVSFYGLGNGTARGGVPAARIAVYKVCDPGVDGCTTDGILAAFDDAIADKVDII 273
Query: 233 SVSLGSD--FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAAS 290
++S+G D PFE EDPIAIG+FHAM GIL NSAGNSGP+P +V++ APW TVAAS
Sbjct: 274 TISIGGDNSSPFE--EDPIAIGAFHAMAKGILIVNSAGNSGPEPSTVASIAPWMFTVAAS 331
Query: 291 SIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADA 350
+ +R FV + VLGNG T G S+NSFDLNG YPL++G A++ S GA A FC+
Sbjct: 332 NTNRAFVTKVVLGNGKTV-GRSVNSFDLNGKKYPLVYGKSASS-SCGAAS--AGFCSPGC 387
Query: 351 LNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDIL 410
L+S +V+GKIV C+S + + A+ + +I+ S TD+A + P +++ +++ +L
Sbjct: 388 LDSKRVKGKIVLCDSPQNPDEAQAMGAIASIVR-SHRTDVASIFSFPVSVLLEDDYNTVL 446
Query: 411 DYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSP 470
Y+ ST+ P A ++ ET + AP V S+ SRGPN I DILKPDITAPG +I+A++SP
Sbjct: 447 SYMNSTKNPKAAVLKSETIFNQRAPVVASYFSRGPNTIIPDILKPDITAPGSEIVAAYSP 506
Query: 471 VAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMD 530
APPS+ DTR V +++ +GTSMSCPH +G AAY+K+ HP WSPS I+SA+MTTA+ M+
Sbjct: 507 DAPPSIS--DTRRVKYSVDTGTSMSCPHVAGVAAYLKSFHPRWSPSMIQSAIMTTAWPMN 564
Query: 531 SRKQ---EDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNS 587
+ E EFAYG+GH++P AI PGLVY+A + D++ FLC Y +R I+GD+S
Sbjct: 565 ASTSPFNELAEFAYGAGHVDPITAIHPGLVYEANKSDHIAFLCGLNYTAKNLRLISGDSS 624
Query: 588 SVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVD 647
S +LNYPS + + +P +F RTVTNVG PN+TY + + + + V
Sbjct: 625 SCTKEQTKSLPRNLNYPSMTAQVSAAKPFKVIFRRTVTNVGRPNATYKAK-VVGSKLKVK 683
Query: 648 VEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIY 699
V P LS ++ E+KSFTV +G + ++S ++W DGVH VRSP+V+Y
Sbjct: 684 VVPAVLSLKSLYEKKSFTVTASGAGPKAENLVSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2102807 AT3G46850 "AT3G46850" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1596 (566.9 bits), Expect = 5.5e-164, P = 5.5e-164
Identities = 331/711 (46%), Positives = 452/711 (63%)
Query: 1 MGERPQG-DFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
MG P D+ S H S+LQ+V G + S ++ LV +Y RSFNGFAA+LT+ E +
Sbjct: 38 MGALPSRVDYMPMSHHTSILQDVTGES-SIQDRLVRNYKRSFNGFAARLTESEREILASM 96
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ---EGSVIIGLLDTGIWPESASFNDK 116
+ V+SV P+ L + TT SW+FMG +GK + E IIG++D+GI+PES SF+ K
Sbjct: 97 DEVVSVFPSKNLNLQTTTSWNFMGLKEGKRTKRNPLIESDTIIGVIDSGIYPESDSFSGK 156
Query: 117 GLSPPPAKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDF-HSPRDSEGHGTHTSSTA 174
G PPP KWKG+C G NFTCNNK+IGARYY + + F S RD+ GHG+HT+S A
Sbjct: 157 GFGPPPKKWKGVCKGGTNFTCNNKLIGARYYTPK----LEGFPESARDNTGHGSHTASIA 212
Query: 175 AGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CXXXXXXXXXXXXXXXGVDI 231
AG V H S+YGL GT RGGVP ARI++YKVC G C VDI
Sbjct: 213 AGNAVKHVSFYGLGNGTVRGGVPAARIAVYKVC-DPGVIRCTSDGILAAFDDAIADKVDI 271
Query: 232 ISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASS 291
I+VSLG+D + ED +AIG+FHAM GILT N AGN+GP+ ++ + APW TVAAS+
Sbjct: 272 ITVSLGADAVGTFEEDTLAIGAFHAMAKGILTVNGAGNNGPERRTIVSMAPWLFTVAASN 331
Query: 292 IDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADAL 351
++R F+ + VLGNG T G S+NSFDLNG YPL++G A S+ + A FC+ L
Sbjct: 332 MNRAFITKVVLGNGKTIVGRSVNSFDLNGKKYPLVYGKSA---SSRCDASSAGFCSPGCL 388
Query: 352 NSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411
+S +V+GKIV C++ + + A+ + +I+ + + D A + P +++S+++ +L
Sbjct: 389 DSKRVKGKIVLCDTQRNPGEAQAMGAVASIVRNP-YEDAASVFSFPVSVLSEDDYNIVLS 447
Query: 412 YIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPV 471
Y+ ST+ P A ++ ET + AP V S+SSRGPNP+ DILKPDITAPG +ILA++SP
Sbjct: 448 YVNSTKNPKAAVLKSETIFNQKAPVVASYSSRGPNPLIHDILKPDITAPGSEILAAYSPY 507
Query: 472 APPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMD- 530
PPS DTR V + +ISGTSMSCPH +G AAY+K HP WSPS I+SA+MTTA+ M+
Sbjct: 508 VPPS--ESDTRHVKYTVISGTSMSCPHVAGVAAYIKTFHPLWSPSMIQSAIMTTAWPMNA 565
Query: 531 --SRKQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSS 588
S E EFAYG+GH++P AI PGLVY+A + D++ FLC Y +R I+GD+SS
Sbjct: 566 STSPSNELAEFAYGAGHVDPIAAIHPGLVYEANKSDHITFLCGFNYTGKKLRLISGDSSS 625
Query: 589 VCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDV 648
+LNYPS S + +P F RTVTNVG PN+TY + + + + V V
Sbjct: 626 CTKEQTKSLTRNLNYPSMSAQVSGTKPFKVTFRRTVTNVGRPNATYKAK-VVGSKLKVKV 684
Query: 649 EPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIY 699
P LS ++ E+KSFTV V+G + ++S ++W DGVH VRSP+V+Y
Sbjct: 685 VPAVLSLKSLYEKKSFTVTVSGAGPKAENLVSAQLIWSDGVHFVRSPIVVY 735
|
|
| TAIR|locus:2168434 SBT4.13 "AT5G59120" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1594 (566.2 bits), Expect = 9.0e-164, P = 9.0e-164
Identities = 328/704 (46%), Positives = 448/704 (63%)
Query: 6 QGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISV 65
+ D+ S H ++LQ V G + S + LV SY RSFNGFAA+LT+ E R ++ GV+SV
Sbjct: 42 RADYTPTSDHMNILQEVTGES-SIEGRLVRSYKRSFNGFAARLTESERERVAKMVGVVSV 100
Query: 66 IPNHKLKIHTTRSWDFMGFSKG---KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPP 122
PN KL++ TT SWDFMG +G K + + E IIG++D+GI PES SF+DKG PPP
Sbjct: 101 FPNKKLQLQTTTSWDFMGLKEGIKTKRNPTVESDTIIGVIDSGITPESQSFSDKGFGPPP 160
Query: 123 AKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPH 181
KWKG+C+G NFTCNNK+IGAR Y SE RD +GHGTHT+STAAG V
Sbjct: 161 QKWKGVCSGGKNFTCNNKLIGARDYTSEGT---------RDMDGHGTHTASTAAGNAVVD 211
Query: 182 ASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVSLGSDFP 241
AS++G+ GT RGGVP +R++ YKVC GC GVD+I++S+G
Sbjct: 212 ASFFGIGNGTVRGGVPASRVAAYKVCTPTGCSSEALLSAFDDAIADGVDLITISIGDKTA 271
Query: 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAV 301
+ DPIAIG+FHAM G+LT NSAGNSGP P SVS APW LTVAAS+ +R FV + V
Sbjct: 272 SMFQNDPIAIGAFHAMAKGVLTVNSAGNSGPKPISVSGVAPWILTVAASTTNRGFVTKVV 331
Query: 302 LGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIV 361
LGNG T G S+N++++ G YPL++G AA S+ + + A C ++ +V+GKI+
Sbjct: 332 LGNGKTLVGKSVNAYEMKGKDYPLVYGKSAA--SSACDAESAGLCELSCVDKSRVKGKIL 389
Query: 362 FCESLLDGSDIL-AVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPI 420
C G I+ +V +G I D+AF +PLPA + E+ + ++ Y+ ST+ P
Sbjct: 390 VCGGP-GGLKIVESVGAVGLIYRTPK-PDVAFIHPLPAAGLLTEDFESLVSYLESTDSPQ 447
Query: 421 ATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480
A ++ E + +P + SFSSRGPN I VDILKPDITAPGV+ILA++SP PS D D
Sbjct: 448 AIVLKTEAIFNRTSPVIASFSSRGPNTIAVDILKPDITAPGVEILAAYSPAGEPSQD--D 505
Query: 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQ--EDLE 538
TR V ++++SGTSMSCPH +G AAYVK +P WSPS I+SA+MTTA+ +++ E
Sbjct: 506 TRHVKYSVLSGTSMSCPHVAGVAAYVKTFNPKWSPSMIQSAIMTTAWPVNATGTGIASTE 565
Query: 539 FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRA 598
FAYGSGH++P A +PGLVY+ + D++ FLC Y + +++ I+G+ + C+ +
Sbjct: 566 FAYGSGHVDPIAASNPGLVYELDKSDHIAFLCGMNYTSQVLKVISGETVT-CSEAKKILP 624
Query: 599 WDLNYPSFSLAIEDGQPIYGV-FTRTVTNVGSPNSTYTVRPYMPASVSVDVE--PQSLSF 655
+LNYPS S + + V F RT+TNVG+PNSTYT + +DV+ P LSF
Sbjct: 625 RNLNYPSMSAKLSGSGTTFTVTFNRTLTNVGTPNSTYTSKVVAGHGSKLDVKITPSVLSF 684
Query: 656 SAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIY 699
V E++SFTV VTG + + S ++W DG H VRSP+V+Y
Sbjct: 685 KTVNEKQSFTVTVTGSNLDSEVPSSANLIWSDGTHNVRSPIVVY 728
|
|
| TAIR|locus:2144583 AT5G03620 "AT5G03620" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
Identities = 343/727 (47%), Positives = 463/727 (63%)
Query: 1 MGERPQGDF-PVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
MGE + A HH++L V+G A+E +YSYG++ NGF A+L E + S
Sbjct: 39 MGEATENSLVEAAENHHNLLMTVIGDESKARELKIYSYGKNINGFVARLFPHEAEKLSRE 98
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGF--SKGKLSSSQEGSVIIGLLDTGIWPESASFNDKG 117
EGV+SV N + ++HTTRSWDF+G SK K S E ++I+G+LDTGI ES SFNDKG
Sbjct: 99 EGVVSVFKNTQRQLHTTRSWDFLGLVESKYKRSVGIESNIIVGVLDTGIDVESPSFNDKG 158
Query: 118 LSPPPAKWKGIC-TGANFT-CNNKIIGARYYN--SENIYEVTDFHSPRDSEGHGTHTSST 173
+ PPPAKWKG C TG NFT CNNK+IGA+Y++ SE + + + + D +GHGTHTSST
Sbjct: 159 VGPPPAKWKGKCVTGNNFTRCNNKVIGAKYFHIQSEGLPD-GEGDTAADHDGHGTHTSST 217
Query: 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIIS 233
AG V AS +G+A GTARGGVP+ARI+ YKVCW GC GVDIIS
Sbjct: 218 IAGVSVSSASLFGIANGTARGGVPSARIAAYKVCWDSGCTDMDMLAAFDEAISDGVDIIS 277
Query: 234 VSLG-SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSI 292
+S+G + PF FEDPIAIG+FHAMK GILT+ SAGN+GP ++VSN APW +TVAA+S+
Sbjct: 278 ISIGGASLPF--FEDPIAIGAFHAMKRGILTTCSAGNNGPGLFTVSNLAPWVMTVAANSL 335
Query: 293 DRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALN 352
DRKF LGNG+T G+S+N F+ YPL G A+N SAG + + C L
Sbjct: 336 DRKFETVVKLGNGLTASGISLNGFNPRKKMYPLTSGSLASNLSAGGYGEPST-CEPGTLG 394
Query: 353 SYKVEGKIVFCESLLD-------GSD--ILAVNGLGTIMADSVFTDLAFSYPLPATLISK 403
KV GK+V+CE+ + G D + ++ G G I+ TD+A S + + +
Sbjct: 395 EDKVMGKVVYCEAGREEGGNGGQGQDHVVRSLKGAGVIVQLLEPTDMATSTLIAGSYVFF 454
Query: 404 ENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVD 463
E+G I +YI ST+ P A I +T K +AP + SFS+RGP I+ +ILKPDI+APG++
Sbjct: 455 EDGTKITEYINSTKNPQAVIFKTKTTK-MLAPSISSFSARGPQRISPNILKPDISAPGLN 513
Query: 464 ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALM 523
ILA++S +A + P+D R F+I+SGTSM+CPHA+ +AAYVK+ HP+WSP++IKSALM
Sbjct: 514 ILAAYSKLASVTGYPDDNRRTLFSIMSGTSMACPHAAAAAAYVKSFHPDWSPAAIKSALM 573
Query: 524 TTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQIT 583
TTA M + E E +YGSG INP +AI PGLVYD TE Y+ FLCK+GYN+T I +T
Sbjct: 574 TTATPMRIKGNE-AELSYGSGQINPRRAIHPGLVYDITEDAYLRFLCKEGYNSTSIGLLT 632
Query: 584 GDNSSV-------CNSTEPGRAWD-LNYPSFSLAIEDGQP-IYGVFTRTVTNVGSPNSTY 634
GDNS+ C + + G D LNYPS + + + VF RTVTNVG STY
Sbjct: 633 GDNSNNTTKKEYNCENIKRGLGSDGLNYPSLHKQVNSTEAKVSEVFYRTVTNVGYGPSTY 692
Query: 635 TVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGP-KIAQQPIMSGAIVWEDGV-HQV 692
R + P + V+V P+ +SF E+++F V + G + I+S ++ W+D H V
Sbjct: 693 VARVWAPKGLRVEVVPKVMSFERPKEKRNFKVVIDGVWDETMKGIVSASVEWDDSRGHLV 752
Query: 693 RSPVVIY 699
RSP++++
Sbjct: 753 RSPILLF 759
|
|
| TAIR|locus:2153296 AT5G59100 "AT5G59100" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1579 (560.9 bits), Expect = 3.5e-162, P = 3.5e-162
Identities = 326/711 (45%), Positives = 455/711 (63%)
Query: 1 MGERP-QGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
+G P + ++ S H S+LQ + G +L + LV SY +SFNGFAA+LT+ E R +
Sbjct: 39 LGSLPSREEYTPMSDHMSILQEITGESL-IENRLVRSYKKSFNGFAARLTESERKRLAGM 97
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGFSKG---KLSSSQEGSVIIGLLDTGIWPESASFNDK 116
E V+SV P+ KLK+ TT SW+FMG +G K + S E IIG++D+GI+PES SF+D+
Sbjct: 98 ERVVSVFPSRKLKLQTTSSWNFMGLKEGIKTKRTRSIESDTIIGVIDSGIYPESDSFSDQ 157
Query: 117 GLSPPPAKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175
G PPP KWKG C G NFTCNNK+IGAR Y +++ T RD GHGTHT+S AA
Sbjct: 158 GFGPPPKKWKGTCAGGKNFTCNNKVIGARDYTAKSKANQT----ARDYSGHGTHTASIAA 213
Query: 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVS 235
G V ++++YGL GTARGGVP ARI++YKVC ++GC GVD+IS+S
Sbjct: 214 GNAVANSNFYGLGNGTARGGVPAARIAVYKVCDNEGCDGEAMMSAFDDAIADGVDVISIS 273
Query: 236 LGSDF--PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSID 293
+ D PFE EDPIAIG+FHAM G+LT N+AGN+GP +V++ APW +VAAS +
Sbjct: 274 IVLDNIPPFE--EDPIAIGAFHAMAVGVLTVNAAGNNGPKISTVTSTAPWVFSVAASVTN 331
Query: 294 RKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNS 353
R F+A+ VLG+G G S+N++D+NG +YPL++G AA + D AR C L+
Sbjct: 332 RAFMAKVVLGDGKILIGRSVNTYDMNGTNYPLVYGKSAALSTCSV--DKARLCEPKCLDG 389
Query: 354 YKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYI 413
V+GKIV C+S + + +G+I+ + D AF P + +S ++ + ++ Y+
Sbjct: 390 KLVKGKIVLCDSTKGLIEAQKLGAVGSIVKNPE-PDRAFIRSFPVSFLSNDDYKSLVSYM 448
Query: 414 RSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAP 473
ST+ P AT++ E + AP V SFSSRGP+ I DILKPDITAPGV+ILA++SP +
Sbjct: 449 NSTKNPKATVLKSEEISNQRAPLVASFSSRGPSSIVSDILKPDITAPGVEILAAYSPDSS 508
Query: 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRK 533
P+ DTR V ++++SGTSM+CPH +G AAYVK HP WSPS I+SA+MTTA+ M++
Sbjct: 509 PTESEFDTRRVKYSVLSGTSMACPHVAGVAAYVKTFHPQWSPSMIQSAIMTTAWPMNASG 568
Query: 534 QE--DLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCN 591
EFAYGSGH++P AI+PGLVY+ T+ D++NFLC Y + +R I+GDNS+
Sbjct: 569 SGFVSTEFAYGSGHVDPIDAINPGLVYELTKADHINFLCGLNYTSDHLRIISGDNSTCTK 628
Query: 592 STEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPY-MPAS-VSVDVE 649
+LNYP+ S + +P F RTVTNVG STY + P S +S+ V
Sbjct: 629 EISKTLPRNLNYPTMSAKVSGTKPFNITFQRTVTNVGMQKSTYNAKVVKFPGSKLSIKVS 688
Query: 650 PQSLSFSAVGEQKSFTVKVTGPKIA-QQPIMSGAIVWEDGVHQVRSPVVIY 699
P+ LS ++ E++SF V V+ I +QP+ S ++W DG H VRSP+++Y
Sbjct: 689 PRVLSMKSMNEKQSFMVTVSSDSIGTKQPV-SANLIWSDGTHNVRSPIIVY 738
|
|
| TAIR|locus:2154528 AT5G58840 "AT5G58840" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 862 (308.5 bits), Expect = 6.6e-162, Sum P(2) = 6.6e-162
Identities = 177/335 (52%), Positives = 219/335 (65%)
Query: 1 MGERPQG--DFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSE 58
MG P ++ S H S+LQ V G + S + LV SY RSFNGFAA+LT+ E R +E
Sbjct: 39 MGSLPSSRLEYTPMSHHMSILQEVTGES-SVEGRLVRSYKRSFNGFAARLTESERERVAE 97
Query: 59 TEGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ---EGSVIIGLLDTGIWPESASFND 115
EGV+SV P+ K+ TT SWDF+G +GK + E IIG +D+GIWPES SF+D
Sbjct: 98 MEGVVSVFPDINYKLQTTASWDFLGLKEGKNTKRNLAIESDTIIGFIDSGIWPESESFSD 157
Query: 116 KGLSPPPAKWKGICT-GANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTA 174
KG PPP KWKG+C+ G NFTCNNK+IGAR Y +E RD EGHGTHT+STA
Sbjct: 158 KGFGPPPKKWKGVCSAGKNFTCNNKLIGARDYTNEGT---------RDIEGHGTHTASTA 208
Query: 175 AGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISV 234
AG V + S+YG+ GTARGGVP +RI+ YK C GC GVD+IS+
Sbjct: 209 AGNAVKNTSFYGIGNGTARGGVPASRIAAYKACSEMGCTTESVLSAFDDAIADGVDLISI 268
Query: 235 SLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDR 294
SLG++ Y DPIAIG+FHAM GILT SAGN GP+P SV + APW LTVAAS+ +R
Sbjct: 269 SLGANLVRTYETDPIAIGAFHAMVKGILTVQSAGNGGPNPGSVMSVAPWILTVAASNTNR 328
Query: 295 KFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGG 329
FV + VLGNG T+ G S+N+FDL G +YPL +GG
Sbjct: 329 GFVTKVVLGNGKTFVGKSLNAFDLKGKNYPL-YGG 362
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| TAIR|locus:2126896 XSP1 "AT4G00230" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1552 (551.4 bits), Expect = 2.5e-159, P = 2.5e-159
Identities = 331/710 (46%), Positives = 437/710 (61%)
Query: 1 MGERPQGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETE 60
+G+RP TH ++L ++ S AKE VYSY ++FN FAAKL+ E + E E
Sbjct: 42 LGDRPDNTEETIKTHINLLSSLNISQEEAKERKVYSYTKAFNAFAAKLSPHEAKKMMEME 101
Query: 61 GVISVIPNHKLKIHTTRSWDFMGFS-KGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLS 119
V+SV N K+HTT+SWDF+G K E VIIG+LDTGI P+S SF D GL
Sbjct: 102 EVVSVSRNQYRKLHTTKSWDFVGLPLTAKRHLKAERDVIIGVLDTGITPDSESFLDHGLG 161
Query: 120 PPPAKWKGICTG-ANFT-CNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGR 177
PPPAKWKG C NFT CNNKIIGA+Y+ + + SP D +GHGTHTSST AG
Sbjct: 162 PPPAKWKGSCGPYKNFTGCNNKIIGAKYFKHDGNVPAGEVRSPIDIDGHGTHTSSTVAGV 221
Query: 178 EVPHASYYGLAEGTARGGVPNARISMYKVCWS-DGCXXXXXXXXXXXXXXXGVDIISVSL 236
V +AS YG+A GTARG VP+AR++MYKVCW+ GC GV+IIS+S+
Sbjct: 222 LVANASLYGIANGTARGAVPSARLAMYKVCWARSGCADMDILAGFEAAIHDGVEIISISI 281
Query: 237 GSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKF 296
G +Y D I++GSFHAM+ GILT SAGN GP +V+N PW LTVAAS IDR F
Sbjct: 282 GGPIA-DYSSDSISVGSFHAMRKGILTVASAGNDGPSSGTVTNHEPWILTVAASGIDRTF 340
Query: 297 VAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKV 356
++ LGNG ++ G+ I+ F SYPL+ G DAA + + +AR+C +D+L+ KV
Sbjct: 341 KSKIDLGNGKSFSGMGISMFSPKAKSYPLVSGVDAAKNTD--DKYLARYCFSDSLDRKKV 398
Query: 357 EGKIVFCESLLDG--SDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414
+GK++ C G S I + G G I+ + D A + PAT ++ G I YI
Sbjct: 399 KGKVMVCRMGGGGVESTIKSYGGAGAIIVSDQYLDNAQIFMAPATSVNSSVGDIIYRYIN 458
Query: 415 STEYPIATIMFGETWKDAM-APKVVSFSSRGPNPITVDILKPDITAPGVDILASWS-PVA 472
ST A I +T + + AP V SFSSRGPNP ++ +LKPDI APG+DILA+++ +
Sbjct: 459 STRSASAVIQ--KTRQVTIPAPFVASFSSRGPNPGSIRLLKPDIAAPGIDILAAFTLKRS 516
Query: 473 PPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532
LD DT+ F I+SGTSM+CPH +G AAYVK+ HP+W+P++IKSA++T+A + R
Sbjct: 517 LTGLDG-DTQFSKFTILSGTSMACPHVAGVAAYVKSFHPDWTPAAIKSAIITSAKPISRR 575
Query: 533 KQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNS 592
+D EFAYG G INP +A PGLVYD ++ YV FLC +GYN T + + G S C+S
Sbjct: 576 VNKDAEFAYGGGQINPRRAASPGLVYDMDDISYVQFLCGEGYNATTLAPLVGTRSVSCSS 635
Query: 593 TEPGRAWD-LNYPSFSLAIEDGQP-IYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEP 650
PG D LNYP+ L + + VF R VTNVG P+S YT P V + VEP
Sbjct: 636 IVPGLGHDSLNYPTIQLTLRSAKTSTLAVFRRRVTNVGPPSSVYTATVRAPKGVEITVEP 695
Query: 651 QSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYN 700
QSLSFS +++SF V V ++ I+SG +VW+ H VRSP+VIY+
Sbjct: 696 QSLSFSKASQKRSFKVVVKAKQMTPGKIVSGLLVWKSPRHSVRSPIVIYS 745
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| TAIR|locus:2154513 AT5G58830 "AT5G58830" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 825 (295.5 bits), Expect = 3.8e-157, Sum P(2) = 3.8e-157
Identities = 173/340 (50%), Positives = 215/340 (63%)
Query: 1 MGERP-QGDFPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSET 59
MG P Q ++ S H ++LQ V G SY RSFNGF+A LT+ E +E
Sbjct: 38 MGSLPSQPNYTPMSNHINILQEVTGE----------SYKRSFNGFSALLTESEREGVAEM 87
Query: 60 EGVISVIPNHKLKIHTTRSWDFMGFSKGKLSSSQ---EGSVIIGLLDTGIWPESASFNDK 116
EGV+SV + K+ TT SWDFMG +GK + E IIG +D+GIWPES SF+DK
Sbjct: 88 EGVVSVFRSKNYKLQTTASWDFMGMKEGKNTKRNFAVESDTIIGFIDSGIWPESESFSDK 147
Query: 117 GLSPPPAKWKGICTGA-NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175
G PPP KWKG+C G NFTCNNK+IGAR Y SE RD +GHGTHT+STAA
Sbjct: 148 GFGPPPKKWKGVCKGGKNFTCNNKLIGARDYTSEGT---------RDLQGHGTHTTSTAA 198
Query: 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCXXXXXXXXXXXXXXXGVDIISVS 235
G V S++G+ GTARGGVP +R++ YKVC GC GVD+ISVS
Sbjct: 199 GNAVADTSFFGIGNGTARGGVPASRVAAYKVCTITGCSDDNVLSAFDDAIADGVDLISVS 258
Query: 236 LGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRK 295
LG D+P Y ED IAIG+FHAM GILT +SAGN+GP+P +V + APW LTVAA++ +R+
Sbjct: 259 LGGDYPSLYAEDTIAIGAFHAMAKGILTVHSAGNAGPNPTTVVSVAPWMLTVAATTTNRR 318
Query: 296 FVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYS 335
F+ + VLGNG T G S+N+FDL G YPL +G D N S
Sbjct: 319 FLTKVVLGNGKTLVGKSVNAFDLKGKKYPLEYG-DYLNES 357
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q39547 | CUCM1_CUCME | 3, ., 4, ., 2, 1, ., 2, 5 | 0.5238 | 0.9223 | 0.9261 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.4.21 | 0.921 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00001075001 | SubName- Full=Chromosome chr2 scaffold_112, whole genome shotgun sequence; (732 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 734 | |||
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-101 | |
| cd04852 | 307 | cd04852, Peptidases_S8_3, Peptidase S8 family doma | 1e-33 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 8e-27 | |
| cd07474 | 295 | cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptid | 1e-21 | |
| cd02120 | 126 | cd02120, PA_subtilisin_like, PA_subtilisin_like: P | 2e-18 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-17 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 6e-16 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 3e-15 | |
| cd07487 | 264 | cd07487, Peptidases_S8_1, Peptidase S8 family doma | 6e-15 | |
| pfam05922 | 76 | pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | 1e-13 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 8e-13 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 2e-12 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 2e-12 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-12 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 4e-12 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 7e-12 | |
| cd07475 | 346 | cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 | 2e-11 | |
| cd07490 | 254 | cd07490, Peptidases_S8_6, Peptidase S8 family doma | 2e-11 | |
| cd00306 | 241 | cd00306, Peptidases_S8_S53, Peptidase domain in th | 3e-11 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-11 | |
| cd07477 | 229 | cd07477, Peptidases_S8_Subtilisin_subset, Peptidas | 8e-11 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 2e-10 | |
| cd07489 | 312 | cd07489, Peptidases_S8_5, Peptidase S8 family doma | 3e-10 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 7e-10 | |
| cd07473 | 259 | cd07473, Peptidases_S8_Subtilisin_like, Peptidase | 9e-10 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 5e-09 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 1e-08 | |
| cd07482 | 294 | cd07482, Peptidases_S8_Lantibiotic_specific_protea | 2e-08 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-08 | |
| pfam00082 | 277 | pfam00082, Peptidase_S8, Subtilase family | 4e-08 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 4e-08 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 1e-07 | |
| TIGR03921 | 350 | TIGR03921, T7SS_mycosin, type VII secretion-associ | 2e-07 | |
| cd04077 | 255 | cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Pep | 6e-07 | |
| cd07496 | 285 | cd07496, Peptidases_S8_13, Peptidase S8 family dom | 1e-06 | |
| cd04842 | 293 | cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 | 3e-06 | |
| cd07484 | 260 | cd07484, Peptidases_S8_Thermitase_like, Peptidase | 4e-06 | |
| cd07497 | 311 | cd07497, Peptidases_S8_14, Peptidase S8 family dom | 7e-06 | |
| cd07481 | 264 | cd07481, Peptidases_S8_BacillopeptidaseF-like, Pep | 3e-05 | |
| cd07480 | 297 | cd07480, Peptidases_S8_12, Peptidase S8 family dom | 3e-05 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 4e-05 | |
| cd04857 | 412 | cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_ | 4e-05 | |
| COG1404 | 508 | COG1404, AprE, Subtilisin-like serine proteases [P | 2e-04 | |
| cd07483 | 291 | cd07483, Peptidases_S8_Subtilisin_Novo-like, Pepti | 2e-04 | |
| cd07485 | 273 | cd07485, Peptidases_S8_Fervidolysin_like, Peptidas | 2e-04 | |
| cd07493 | 261 | cd07493, Peptidases_S8_9, Peptidase S8 family doma | 3e-04 | |
| cd04848 | 267 | cd04848, Peptidases_S8_Autotransporter_serine_prot | 6e-04 | |
| cd07478 | 455 | cd07478, Peptidases_S8_CspA-like, Peptidase S8 fam | 0.002 | |
| cd07476 | 267 | cd07476, Peptidases_S8_thiazoline_oxidase_subtilis | 0.002 | |
| cd04847 | 291 | cd04847, Peptidases_S8_Subtilisin_like_2, Peptidas | 0.002 | |
| cd05561 | 239 | cd05561, Peptidases_S8_4, Peptidase S8 family doma | 0.002 | |
| cd05562 | 275 | cd05562, Peptidases_S53_like, Peptidase domain in | 0.003 | |
| cd07498 | 242 | cd07498, Peptidases_S8_15, Peptidase S8 family dom | 0.004 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 312 bits (802), Expect = e-101
Identities = 122/237 (51%), Positives = 149/237 (62%), Gaps = 16/237 (6%)
Query: 71 LKIHTTRSWDFMGFSKGKLSSSQEGS-----VIIGLLDTGIWPESASFNDKGLSPPPAKW 125
++HTTRS DF+G S + +IIG+LDTGIWPE SF D G P P W
Sbjct: 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTW 60
Query: 126 KGIC-TGANFT---CNNKIIGARYYN-----SENIYEVTDFHSPRDSEGHGTHTSSTAAG 176
G C TG +F CNNK+IGARY++ ++ SPRD +GHGTHT+STAAG
Sbjct: 61 PGDCVTGEDFNPFSCNNKLIGARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAG 120
Query: 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSD-GCATADILAAFDDAIADGVDIISVS 235
V +AS G A GTA G P ARI++YKVCW D GC +DILAA D AIADGVD+IS S
Sbjct: 121 NVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYS 180
Query: 236 LGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSI 292
+G P +EDPIAI HA++ GI + SAGNSGP +V N APW TVAAS++
Sbjct: 181 IGGGSPD-PYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAASTL 236
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173795 cd04852, Peptidases_S8_3, Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Score = 130 bits (330), Expect = 1e-33
Identities = 52/96 (54%), Positives = 61/96 (63%), Gaps = 15/96 (15%)
Query: 444 GPNPITVD------------ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
GP TV LKPDI APGVDILA+W+P DP D R F ISG
Sbjct: 215 GPGASTVPNVAPWVTTVAASTLKPDIAAPGVDILAAWTP---EGADPGDARGEDFAFISG 271
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527
TSM+ PH +G AA +K+AHP+WSP++IKSALMTTAY
Sbjct: 272 TSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307
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This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 307 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 66/201 (32%), Positives = 96/201 (47%), Gaps = 26/201 (12%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT- 155
V + ++DTGI G P K KG G +F + Y + +
Sbjct: 4 VKVAVIDTGIDYTHPDL--GGPGFPNDKVKG---GYDF------VDDDYDPMDTRPYPSP 52
Query: 156 -DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CA 213
S D+ GHGTH + AG G+ GT +G P A + YKV G
Sbjct: 53 LGDASAGDATGHGTHVAGIIAG--------NGVNVGTIKGVAPKADLYAYKVLGPGGSGT 104
Query: 214 TADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD 273
T I+AA + A+ DG+D+I++SLGS DP AI +A+K G++ +AGNSGP
Sbjct: 105 TDVIIAAIEQAVDDGMDVINLSLGSSVNGPD--DPDAIAINNAVKAGVVVVAAAGNSGPA 162
Query: 274 PYSVSN--FAPWTLTVAASSI 292
PY++ + AP +TV AS++
Sbjct: 163 PYTIGSPATAPSAITVGASTV 183
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|173800 cd07474, Peptidases_S8_subtilisin_Vpr-like, Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 48/125 (38%), Positives = 66/125 (52%), Gaps = 13/125 (10%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
A A V SSRGP P + +KPDI APGVDI+++ +
Sbjct: 183 VADVAEADTVGPSSSRGP-PTSDSAIKPDIVAPGVDIMSTAP-----------GSGTGYA 230
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYV-MDSRKQEDLEFAYGSGHI 546
+SGTSM+ PH +G+AA +K AHP+WSP+ IK+ALM TA DS G+G +
Sbjct: 231 RMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRV 290
Query: 547 NPAQA 551
+ +A
Sbjct: 291 DALRA 295
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The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 295 |
| >gnl|CDD|239035 cd02120, PA_subtilisin_like, PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 81.7 bits (202), Expect = 2e-18
Identities = 45/132 (34%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKI 360
LGNG T G S+ +L +YPL++ SA + A C +L+ KV+GKI
Sbjct: 3 TLGNGKTIVGQSLYPGNL--KTYPLVYK------SANSGDVDASLCLPGSLDPSKVKGKI 54
Query: 361 VFCESLLD------GSDILAVNGLGTIMA---DSVFTDLAFSYPLPATLISKENGQDILD 411
V C+ + G + A G G I+A +A ++ LPA + E+G IL
Sbjct: 55 VLCDRGGNTSRVAKGDAVKAAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILS 114
Query: 412 YIRSTEYPIATI 423
YI ST P ATI
Sbjct: 115 YINSTSNPTATI 126
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This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accumulate extracellularly. Some of the P69 genes are tightly regulated in a tissue specific fashion, and by environmental and developmental signals. For example: infection with avirulent bacteria activates transcription of the genes for the P69 B and C isoforms, the P69 E transcript was detected only in roots, and the P69F transcript only in hydathodes. The Tomato LeSBT2 subtilase transcript was not detected in flowers and roots, but was present in cotyledons and leaves. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Length = 126 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 81.5 bits (201), Expect = 3e-17
Identities = 61/244 (25%), Positives = 88/244 (36%), Gaps = 48/244 (19%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V + ++DTG+ P+ + G + N
Sbjct: 1 VTVAVIDTGVDPDHPDLDGLFGGGDG--------GNDDDDNEN----------------G 36
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATA 215
P D GHGTH + A G G P A++ KV DG +++
Sbjct: 37 PTDPDDGNGHGTHVAGIIAASANN---------GGGVGVAPGAKLIPVKVLDGDGSGSSS 87
Query: 216 DILAAFDDAIAD-GVDIISVSLGSDF--PFEYFEDPIAIGSFHAM-KYGILTSNSAGNSG 271
DI AA D A AD G D+I++SLG P + I +A+ K G+L +AGN G
Sbjct: 88 DIAAAIDYAAADQGADVINLSLGGPGSPPSSALSEAID----YALAKLGVLVVAAAGNDG 143
Query: 272 PDPYSVSNF---APWTLTVAASSIDRKFVAQAVLGNG---ITYPGLSINSFDLNGISYPL 325
PD + + +P + V A D + + G I PG I S G
Sbjct: 144 PDGGTNIGYPAASPNVIAVGAVDRDGTPASPSSNGGAGVDIAAPGGDILSSPTTGGGGYA 203
Query: 326 IWGG 329
G
Sbjct: 204 TLSG 207
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 6e-16
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 436 KVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494
+ FSSRGP T D +KPD+ APG +I++ SP P SGTSM
Sbjct: 179 GISYFSSRGP---TGDGRIKPDVVAPGENIVSCRSPGGNPGAGVGSGYFEM----SGTSM 231
Query: 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527
+ PH SG+ A + A+P +P +K L TA
Sbjct: 232 ATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 16/115 (13%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
FS+ G VD +KPDI APG +IL+S ++ SGTSM+ P
Sbjct: 179 DFSNYGG---PVDGIKPDIVAPGGNILSSGP----------GGDLGGYDSHSGTSMAAPL 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G+AA + +A+P+ +P ++++ L+TTA + S + +G G +N +A+
Sbjct: 226 VAGAAALLLSANPSLTPETLRALLVTTATDLGSMGLDRS---FGYGLLNLGKAVK 277
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173812 cd07487, Peptidases_S8_1, Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 51/202 (25%), Positives = 82/202 (40%), Gaps = 43/202 (21%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
+ + +LDTGI F+ + I A + N V
Sbjct: 4 ITVAVLDTGIDAPHPDFDGRI----------------------IRFADFVN-----TVNG 36
Query: 157 FHSPRDSEGHGTHTSSTAAGR-EVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT- 214
+P D GHGTH + AG + Y G+A P A + KV G +
Sbjct: 37 RTTPYDDNGHGTHVAGIIAGSGRASNGKYKGVA--------PGANLVGVKVLDDSGSGSE 88
Query: 215 ADILAAFDDAIAD----GVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNS 270
+DI+A D + + + ++++SLG+ Y EDP+ GI+ +AGNS
Sbjct: 89 SDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDPLCQAVERLWDAGIVVVVAAGNS 148
Query: 271 GPDPYSVSN--FAPWTLTVAAS 290
GP P ++++ +P +TV A
Sbjct: 149 GPGPGTITSPGNSPKVITVGAV 170
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 264 |
| >gnl|CDD|203351 pfam05922, Inhibitor_I9, Peptidase inhibitor I9 | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-13
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 11 VASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHK 70
V S+H S + +A S++YSY FNGFAAKLT+EE + + V V P+
Sbjct: 15 VFSSHKSWHASSKEE--AAGASILYSYKHGFNGFAAKLTEEEAEKLRKHPDVEYVEPDQV 72
Query: 71 LKIH 74
+++H
Sbjct: 73 VELH 76
|
This family includes the proteinase B inhibitor from Saccharomyces cerevisiae and the activation peptides from peptidases of the subtilisin family. The subtilisin propeptides are known to function as molecular chaperones, assisting in the folding of the mature peptidase, but have also been shown to act as 'temporary inhibitors'. Length = 76 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 8e-13
Identities = 56/222 (25%), Positives = 88/222 (39%), Gaps = 27/222 (12%)
Query: 94 EGSVIIGLLDTGIWPESASFN------DKGLSPPPAKWKGICTGANFTCNNKIIGARYY- 146
EG V+ ++D+G+ P +F K AK K G N K+ A Y
Sbjct: 11 EGMVV-AVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYA 69
Query: 147 -NSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYK 205
N+++I + D S HG H + AG + G+ +G A P A++ K
Sbjct: 70 DNNDDILDEDDGSS------HGMHVAGIVAGNGDEEDNGEGI-KGVA----PEAQLLAMK 118
Query: 206 V---CWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGIL 262
V A +DA+ G D+I++SLGS F +DP A + G++
Sbjct: 119 VFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFVDLDDPEQQAIKRAREAGVV 178
Query: 263 TSNSAGNSG----PDPYSVSNFAPWTLTVAASSIDRKFVAQA 300
+AGN G ++ P T TV + + + A
Sbjct: 179 VVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVA 220
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-12
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAP 473
++ P + G + + V SFSSRGP T D +KPD+ APG IL++ S
Sbjct: 179 ASNNPSVSNGEGGLGQSDNSDTVASFSSRGP---TYDGRIKPDLVAPGTGILSARSGGGG 235
Query: 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAA----------YVKAAHPNWSPSSIKSALM 523
+ ++ SGTSM+ P +G+AA Y +P S + +K+ L+
Sbjct: 236 IGDTSDS----AYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNP--SAALLKALLI 289
Query: 524 TTA 526
+A
Sbjct: 290 NSA 292
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 2e-12
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 21/87 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP ++ APGVDIL+++ P + + +SGTSM+ PH
Sbjct: 164 SFSSTGPEV--------ELAAPGVDILSTY---------PNND----YAYLSGTSMATPH 202
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTT 525
+G AA V + P + + ++ AL T
Sbjct: 203 VAGVAALVWSKRPELTNAQVRQALNKT 229
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 39/99 (39%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 429 WKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNI 488
W + S S +P + KPD+ APGVD+ S + D + TR
Sbjct: 166 WFSSFGSSGASLVSAPDSP-PDEYTKPDVAAPGVDVY---SARQGANGDGQYTR------ 215
Query: 489 ISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527
+SGTSM+ PH +G AA + AAHP+ SP IK AL TAY
Sbjct: 216 LSGTSMAAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 4e-12
Identities = 35/99 (35%), Positives = 49/99 (49%), Gaps = 23/99 (23%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
DA A SFS+ G VDI APGVDIL++W +
Sbjct: 178 DSDDARA----SFSNYGS---CVDIF-----APGVDILSAWI-----------GSDTATA 214
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
+SGTSM+ PH +G AAY+ + P+ SP+ +K+ L+ A
Sbjct: 215 TLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLA 253
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 7e-12
Identities = 32/88 (36%), Positives = 48/88 (54%), Gaps = 20/88 (22%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+ G TVD+ APGVDIL S P + +SGTSM+ PH
Sbjct: 191 SFSNYGKK--TVDL-----AAPGVDIL---------STSPGG----GYGYMSGTSMATPH 230
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTA 526
+G+AA + + +PN + + IK A++++A
Sbjct: 231 VAGAAALLLSLNPNLTAAQIKDAILSSA 258
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173801 cd07475, Peptidases_S8_C5a_Peptidase, Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-11
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 28/132 (21%)
Query: 434 APKVVSFSSRGPNPITVDI-LKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGT 492
++ FSS GP T D+ LKPDITAPG +I +S V + SGT
Sbjct: 231 GGQMSGFSSWGP---TPDLDLKPDITAPGGNI---YSTVNDNTYGYM----------SGT 274
Query: 493 SMSCPHASGSAA----YVKAAHPNWSPSS----IKSALMTTAYVMDSRKQEDLEFA---Y 541
SM+ PH +G++A +K +P S +K+ LM TA + ++
Sbjct: 275 SMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDSEDTKTYYSPRRQ 334
Query: 542 GSGHINPAQAID 553
G+G I+ A+AI
Sbjct: 335 GAGLIDVAKAIA 346
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 346 |
| >gnl|CDD|173815 cd07490, Peptidases_S8_6, Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 41/199 (20%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V + +LDTG+ + + A+W A+F N +I
Sbjct: 2 VTVAVLDTGVDADHPDLAGR-----VAQW------ADFDENRRISA-------------- 36
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATAD 216
D+ GHGTH S T G G A+G G P A + KV G + +
Sbjct: 37 -TEVFDAGGHGTHVSGTIGG---------GGAKGVYIGVAPEADLLHGKVLDDGGGSLSQ 86
Query: 217 ILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA--IGSFHAMKYGILTSNSAGNSGPDP 274
I+A + A+ D++S+SLG Y EDP+ + + + G L SAGN G
Sbjct: 87 IIAGMEWAVEKDADVVSMSLGGT---YYSEDPLEEAVEALSN-QTGALFVVSAGNEGHGT 142
Query: 275 YSVSNFAPWTLTVAASSID 293
A L+V A D
Sbjct: 143 SGSPGSAYAALSVGAVDRD 161
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 254 |
| >gnl|CDD|173787 cd00306, Peptidases_S8_S53, Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Score = 63.8 bits (155), Expect = 3e-11
Identities = 28/87 (32%), Positives = 44/87 (50%), Gaps = 19/87 (21%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
S+ G DI APG DIL+S T + +SGTSM+ P
Sbjct: 174 PSSNGGA--------GVDIAAPGGDILSS-----------PTTGGGGYATLSGTSMAAPI 214
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTT 525
+G AA + +A+P+ +P+ +K+AL++T
Sbjct: 215 VAGVAALLLSANPDLTPAQVKAALLST 241
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 241 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 3e-11
Identities = 32/90 (35%), Positives = 52/90 (57%), Gaps = 16/90 (17%)
Query: 439 SFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCP 497
FSS GP T + LKPD+ APG +IL+++ P + + ++SGTSM+ P
Sbjct: 190 YFSSWGP---TNELYLKPDVAAPGGNILSTY----PLAGG-------GYAVLSGTSMATP 235
Query: 498 HASGSAA-YVKAAHPNWSPSSIKSALMTTA 526
+ +G+AA ++A H SP+ ++ L +TA
Sbjct: 236 YVAGAAALLIQARHGKLSPAELRDLLASTA 265
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173803 cd07477, Peptidases_S8_Subtilisin_subset, Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 8e-11
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 155 TDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT 214
D + +D GHGTH + A + G P A + KV DG T
Sbjct: 31 DDNNDYQDGNGHGTHVAGIIAALD---------NGVGVVGVAPEADLYAVKVLNDDGSGT 81
Query: 215 A-DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD 273
DI+A + AI +G+DII++SLG + I A GIL +AGNSG
Sbjct: 82 YSDIIAGIEWAIENGMDIINMSLGGPSDSPALREAIKK----AYAAGILVVAAAGNSGNG 137
Query: 274 PYSVSNFAPWTLTVAASSIDRK 295
S A + +A ++D
Sbjct: 138 DSSYDYPAKYPSVIAVGAVDSN 159
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thought it has a 30% difference in amino acid sequence. The substrate binding regions are also similar and 2 possible Ca2+ binding sites have been identified recently. Subtilisin Carlsberg possesses the highest commercial importance as a proteolytic additive for detergents. Serine protease Pb92, the serine protease from the alkalophilic Bacillus strain PB92, also contains two calcium ions and the overall folding of the polypeptide chain closely resembles that of the subtilisins. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 229 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 21/96 (21%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
+ FS RGP +KPDI APGV+IL S + SGTS++
Sbjct: 359 IAIFSGRGPTRD--GRIKPDIAAPGVNILT-------ASPGG------GYTTRSGTSVAA 403
Query: 497 PHASGSAA------YVKAAHPNWSPSSIKSALMTTA 526
+G+ A V+ P IK+ L+ A
Sbjct: 404 AIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGA 439
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173814 cd07489, Peptidases_S8_5, Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 12/113 (10%)
Query: 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATAD-IL 218
P D +GHGTH + A YG G P A + Y+V G T D I+
Sbjct: 64 PMDCQGHGTHVAGIIAANPNA----YGFT-----GVAPEATLGAYRVFGCSGSTTEDTII 114
Query: 219 AAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSG 271
AAF A DG D+I+ SLG P + EDP A+ + + G++ + +AGN G
Sbjct: 115 AAFLRAYEDGADVITASLGG--PSGWSEDPWAVVASRIVDAGVVVTIAAGNDG 165
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 312 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 7e-10
Identities = 41/202 (20%), Positives = 62/202 (30%), Gaps = 51/202 (25%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V +G++D+GI F + ++
Sbjct: 5 VKVGVIDSGIDLSHPEFAGRVSEA-------------------SYYVAVNDAGYAS---- 41
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGV-PNARISMYKVCWSDGC--A 213
D + HGTH + A +G GV P+A + + S G +
Sbjct: 42 ---NGDGDSHGTHVAGVIAAA----------RDGGGMHGVAPDATLYSARASASAGSTFS 88
Query: 214 TADILAAFDDAIADGVDIISVSLG-SDFPFEYFEDPIAIG----------SFHAMKYGIL 262
ADI AA+D A GV II+ S G + A G L
Sbjct: 89 DADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAANAGGL 148
Query: 263 TSNSAGNSG-PDPYSVSNFAPW 283
+AGN G +P + P+
Sbjct: 149 FVFAAGNDGQANPSLAAAALPY 170
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173799 cd07473, Peptidases_S8_Subtilisin_like, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 9e-10
Identities = 54/212 (25%), Positives = 79/212 (37%), Gaps = 40/212 (18%)
Query: 95 GSVIIGLLDTGIWPESASFNDKGLSPPPAKWK---GICTGANFTCNNKII----GARYYN 147
G V++ ++DTG+ +N L W I N + G + N
Sbjct: 2 GDVVVAVIDTGV-----DYNHPDLKD--NMWVNPGEIPGNGIDDDGNGYVDDIYGWNFVN 54
Query: 148 SENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVC 207
++N P D GHGTH + G G N +I K
Sbjct: 55 NDN--------DPMDDNGHGTHVAGIIGAV--------GNNGIGIAGVAWNVKIMPLKFL 98
Query: 208 WSDGC-ATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNS 266
+DG T+D + A D A+ G II+ S G P + D IA A+ GIL +
Sbjct: 99 GADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGPSQALRDAIA----RAIDAGILFVAA 154
Query: 267 AGNSGPDP-----YSVSNFAPWTLTVAASSID 293
AGN G + Y S ++VAA+ +
Sbjct: 155 AGNDGTNNDKTPTYPASYDLDNIISVAATDSN 186
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 259 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 5e-09
Identities = 37/114 (32%), Positives = 54/114 (47%), Gaps = 19/114 (16%)
Query: 441 SSRGPNPITVDILKPDITAP-GVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHA 499
R P P KPD+TAP GV+ PP+ GTS + PHA
Sbjct: 179 GIRLPTP--EVRQKPDVTAPDGVNGTVDGDGDGPPNF-------------FGTSAAAPHA 223
Query: 500 SGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G AA V +A+P +P+ I+ AL +TA M + + A GSG ++ +A+
Sbjct: 224 AGVAALVLSANPGLTPADIRDALRSTALDMG---EPGYDNASGSGLVDADRAVA 274
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-08
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 15/72 (20%)
Query: 440 FSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHA 499
FSSRGP T +KPDI+APGV+I ++ + SGTSM+ PH
Sbjct: 190 FSSRGP--STYGRIKPDISAPGVNIRSAVP-------------GGGYGSSSGTSMAAPHV 234
Query: 500 SGSAAYVKAAHP 511
+G AA + +A+P
Sbjct: 235 AGVAALLWSANP 246
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173808 cd07482, Peptidases_S8_Lantibiotic_specific_protease, Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 44/186 (23%), Positives = 70/186 (37%), Gaps = 36/186 (19%)
Query: 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT 155
V + ++D+GI + L I + + Y+ + E
Sbjct: 1 KVTVAVIDSGI-----DPDHPDLKN------SISSYSKNLVPKG-----GYDGKEAGETG 44
Query: 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVC-WSDGCAT 214
D + D GHGT + A A G +G P I Y+V +
Sbjct: 45 DINDIVDKLGHGTAVAGQIA------------ANGNIKGVAPGIGIVSYRVFGSCGSAES 92
Query: 215 ADILAAFDDAIADGVDIISVSLGS--DFPFEYFEDPIAIGSF-----HAMKYGILTSNSA 267
+ I+ A DA DGVD+I++SLG EY +D + ++ +A G + +A
Sbjct: 93 SWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYNAYKKAINYAKSKGSIVVAAA 152
Query: 268 GNSGPD 273
GN G D
Sbjct: 153 GNDGLD 158
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 294 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 32/92 (34%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 436 KVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494
SFSS GP T D LKPD+ A G I + +GTS
Sbjct: 185 NKASFSSIGP---TADGRLKPDVMALGTGIYVINGDG-------------NITYANGTSF 228
Query: 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
SCP +G A + AHPNW+ IK A++ +A
Sbjct: 229 SCPLIAGLIACLWQAHPNWTNLQIKEAILKSA 260
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 4e-08
Identities = 42/208 (20%), Positives = 74/208 (35%), Gaps = 42/208 (20%)
Query: 98 IIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDF 157
+G+LDTGI + + G + +++ D
Sbjct: 1 TVGVLDTGIDVNHPDLSG-----------------RYIGLAYRNGYDFVDNDPDPTPDD- 42
Query: 158 HSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADI 217
D+ GHGTH + A + + G+A PNA++ KV G +++
Sbjct: 43 ----DNNGHGTHVAGIIAAGDNNGSGGVGVA--------PNAKLESVKVLPGSGGTDSEL 90
Query: 218 LAAFDDAI--ADGVDIISVSLGSDF----PFEYFEDPIAIGSFHAMKYGILTSNSAGNSG 271
A + A + + +I++SLG + D +A+ A G L +AGN G
Sbjct: 91 AGAIEWAAERPNDIRVINMSLGPVDGPPSSWSSAIDELAVNG--ADNKGSLFVVAAGNGG 148
Query: 272 PDPYSVSNFAP---WT-LTVAASSIDRK 295
+ P +TV A + +
Sbjct: 149 DYADNNPVSDPASANNIITVGAVTENGT 176
|
Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 4e-08
Identities = 35/84 (41%), Positives = 45/84 (53%), Gaps = 10/84 (11%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATAD-I 217
+D GHGTH + T GR+VP Y G ARG A I++ DG I
Sbjct: 41 DVQDGHGHGTHCAGTIFGRDVPGPRY-----GVARG----AEIALIGKVLGDGGGGDGGI 91
Query: 218 LAAFDDAIADGVDIISVSLGSDFP 241
LA A+A+G D+IS+SLG+DFP
Sbjct: 92 LAGIQWAVANGADVISMSLGADFP 115
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D++APG IL++ P+ + +SGTSM+ PH +G AA + + P S
Sbjct: 200 DVSAPGGGILSTT---------PDGD----YAYMSGTSMATPHVAGVAALLYSQGP-LSA 245
Query: 516 SSIKSALMTTA 526
S ++ AL TA
Sbjct: 246 SEVRDALKKTA 256
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|234398 TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 23/114 (20%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS GP D+ APG +I+ SL P SGTS + P
Sbjct: 192 SFSLPGP--------WVDLAAPGENIV---------SLSPGGD---GLATTSGTSFAAPF 231
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
SG+AA V++ P+ + + ++ + TA D + + G G ++P A+
Sbjct: 232 VSGTAALVRSRFPDLTAAQVRRRIEATA---DHPARGGRDDYVGYGVVDPVAAL 282
|
Members of this family are subtilisin-related serine proteases, found strictly in the Actinobacteria and associated with type VII secretion operons. The designation mycosin is used for members from Mycobacterium [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair]. Length = 350 |
| >gnl|CDD|173790 cd04077, Peptidases_S8_PCSK9_ProteinaseK_like, Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 6e-07
Identities = 49/201 (24%), Positives = 73/201 (36%), Gaps = 59/201 (29%)
Query: 101 LLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP 160
+LDTGI F + A W GA+F
Sbjct: 31 VLDTGIRTTHVEFGGR------AIW-----GADFV--------------------GGDPD 59
Query: 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT-ADILA 219
D GHGTH + T G+ YG+A+ V KV +G T + I+A
Sbjct: 60 SDCNGHGTHVAGTVGGK------TYGVAKKANLVAV--------KVLDCNGSGTLSGIIA 105
Query: 220 AFDDAIADGVD-----IISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD- 273
+ D + ++SLG + +A A+ G++ +AGNS D
Sbjct: 106 GLEWVANDATKRGKPAVANMSLGGGAS-TALDAAVA----AAVNAGVVVVVAAGNSNQDA 160
Query: 274 -PYSVSNFAPWTLTVAASSID 293
YS ++ AP +TV A+ D
Sbjct: 161 CNYSPAS-APEAITVGATDSD 180
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding motifs found in these differ. Proteinase T is a novel proteinase from the fungus Tritirachium album Limber. The amino acid sequence of proteinase T as deduced from the nucleotide sequence is about 56% identical to that of proteinase K. Length = 255 |
| >gnl|CDD|173820 cd07496, Peptidases_S8_13, Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 1e-06
Identities = 28/90 (31%), Positives = 46/90 (51%), Gaps = 12/90 (13%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILAS-WSPVAPPSLD--PEDTRSVSFNIISGTSMS 495
S+S+ GP D++APG D + P S S ++ + GTSM+
Sbjct: 205 SYSNYGP--------AVDVSAPGGDCASDVNGDGYPDSNTGTTSPGGS-TYGFLQGTSMA 255
Query: 496 CPHASGSAAYVKAAHPNWSPSSIKSALMTT 525
PH +G AA +K+ +P+ +P+ I+S L +T
Sbjct: 256 APHVAGVAALMKSVNPSLTPAQIESLLQST 285
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 285 |
| >gnl|CDD|173791 cd04842, Peptidases_S8_Kp43_protease, Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 50/206 (24%), Positives = 73/206 (35%), Gaps = 19/206 (9%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATA--D 216
+ D +GHGTH + AG+ + +G P A++ + + G ++ D
Sbjct: 49 TKDDVDGHGTHVAGIIAGK-----GNDSSSISLYKGVAPKAKLYFQDIGDTSGNLSSPPD 103
Query: 217 ILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS 276
+ F G I S S GS Y A F IL SAGN G D +
Sbjct: 104 LNKLFSPMYDAGARISSNSWGSPVNNGYTLLARAYDQFAYNNPDILFVFSAGNDGNDGSN 163
Query: 277 VSNFAPWT----LTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGD-- 330
+P T LTV AS+ V+ G G + ++ SF G +Y D
Sbjct: 164 TI-GSPATAKNVLTVGASNNPS--VSNGEGGLGQSDNSDTVASFSSRGPTYDGRIKPDLV 220
Query: 331 ---AANYSAGANPDIARFCAADALNS 353
SA + + A S
Sbjct: 221 APGTGILSARSGGGGIGDTSDSAYTS 246
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases. Length = 293 |
| >gnl|CDD|173810 cd07484, Peptidases_S8_Thermitase_like, Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 4e-06
Identities = 42/146 (28%), Positives = 61/146 (41%), Gaps = 19/146 (13%)
Query: 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASY---YGLAEGTARGGVPNARISMYKVCWSD 210
V + D GHGTH + A A+ G+A G A P A+I KV ++
Sbjct: 58 VDNDSDAMDDNGHGTHVAGIIA------AATNNGTGVA-GVA----PKAKIMPVKVLDAN 106
Query: 211 GCAT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGN 269
G + ADI A G +I++SLG ++ I +A G++ +AGN
Sbjct: 107 GSGSLADIANGIRYAADKGAKVINLSLGGGLGSTALQEAIN----YAWNKGVVVVAAAGN 162
Query: 270 SGPDPYSVSNFAPWTLTVAASSIDRK 295
G S P + VAA+ D K
Sbjct: 163 EGVSSVSYPAAYPGAIAVAATDQDDK 188
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53 the it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 260 |
| >gnl|CDD|173821 cd07497, Peptidases_S8_14, Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 7e-06
Identities = 32/96 (33%), Positives = 48/96 (50%), Gaps = 11/96 (11%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
VVS+SSRGP+ KPD+ A G +W+P + +F++ GTSM+
Sbjct: 221 VVSWSSRGPSIA--GDPKPDLAAIGA---FAWAPGRVLDSGGALDGNEAFDLFGGTSMAT 275
Query: 497 PHASGSAAYV------KAAHPNWSPSSIKSALMTTA 526
P +GSAA V K + P +++ LM+TA
Sbjct: 276 PMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 311 |
| >gnl|CDD|173807 cd07481, Peptidases_S8_BacillopeptidaseF-like, Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 38/153 (24%), Positives = 57/153 (37%), Gaps = 29/153 (18%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADIL 218
P D GHGTHT T G + +G G P AR + +G AD L
Sbjct: 47 LPYDDNGHGTHTMGTMVGNDG---------DGQQIGVAPGARWIACRALDRNGGNDADYL 97
Query: 219 AAFDDAIA----DGV--------DIISVSLGSDFPF-EYFEDPIAIGSFHAMKYGILTSN 265
+A G D+I+ S G E+ + A+ ++ A GI
Sbjct: 98 RCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSGDNEWLQP--AVAAWRAA--GIFPVF 153
Query: 266 SAGNSGPDPYSVSNFA---PWTLTVAASSIDRK 295
+AGN GP +++ P + V A+ +
Sbjct: 154 AAGNDGPRCSTLNAPPANYPESFAVGATDRNDV 186
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Length = 264 |
| >gnl|CDD|173806 cd07480, Peptidases_S8_12, Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-05
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 13/50 (26%)
Query: 455 PDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAA 504
DI APGVDI+++ + +SGTSM+ PH +G AA
Sbjct: 213 VDIAAPGVDIVSAAPGGG-------------YRSMSGTSMATPHVAGVAA 249
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 297 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 25/88 (28%), Positives = 39/88 (44%), Gaps = 12/88 (13%)
Query: 438 VSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCP 497
S+S+ G D+ APGV I D + SGTS + P
Sbjct: 167 ASYSNYGNYV--------DLVAPGVGI----WTTGTGRGSAGDYPGGGYGSFSGTSFASP 214
Query: 498 HASGSAAYVKAAHPNWSPSSIKSALMTT 525
A+G AA + +A+PN +P+ ++ L +T
Sbjct: 215 VAAGVAALILSANPNLTPAEVEDILTST 242
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
| >gnl|CDD|173796 cd04857, Peptidases_S8_Tripeptidyl_Aminopeptidase_II, Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 4e-05
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 19/92 (20%)
Query: 441 SSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHA 499
SSRGP T D L I+APG I + V +L +++GTSMS P+A
Sbjct: 333 SSRGP---TADGALGVSISAPGGAI----ASVPNWTLQGS-------QLMNGTSMSSPNA 378
Query: 500 SGSAAYV----KAAHPNWSPSSIKSALMTTAY 527
G A + KA ++P S++ AL TA
Sbjct: 379 CGGIALLLSGLKAEGIPYTPYSVRRALENTAK 410
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. Length = 412 |
| >gnl|CDD|224322 COG1404, AprE, Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.5 bits (104), Expect = 2e-04
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 434 APKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTS 493
+ V SFS+ G DI APGV+I S A +L + V+ SGTS
Sbjct: 315 SDTVASFSNDGSPT------GVDIAAPGVNI---LSLSAVNTLPGDGADYVTL---SGTS 362
Query: 494 MSCPHASGSAAYVKAAHP-NWSPSSIKSALMTTA 526
M+ PH SG AA V +A+P +P+ +++ ++TTA
Sbjct: 363 MAAPHVSGVAALVLSANPNELTPAQVRNLIVTTA 396
|
Length = 508 |
| >gnl|CDD|173809 cd07483, Peptidases_S8_Subtilisin_Novo-like, Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 20/90 (22%)
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
V +FS+ G VD+ APG I S P++ + SGTSM+
Sbjct: 221 VANFSNYGK--KNVDVF-----APGERIY---------STTPDNE----YETDSGTSMAA 260
Query: 497 PHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
P SG AA + + +PN + +K ++ +
Sbjct: 261 PVVSGVAALIWSYYPNLTAKEVKQIILESG 290
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin.. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173811 cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 9/72 (12%)
Query: 456 DITAPGVD-ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNW- 513
DI APGV IL++ P LD + + + +SGTSM+ PH SG AA V + P+
Sbjct: 209 DIAAPGVGTILSTV-----PKLDGDGGGNYEY--LSGTSMAAPHVSGVAALVLSKFPDVF 261
Query: 514 SPSSIKSALMTT 525
+P I+ L +
Sbjct: 262 TPEQIRKLLEES 273
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members have been shown to bind up to 4 ions via binding sites with different affinity. There is a great diversity in the characteristics of their members: some contain disulfide bonds, some are intracellular while others are extracellular, some function at extreme temperatures, and others at high or low pH values. Length = 273 |
| >gnl|CDD|173818 cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 66/242 (27%), Positives = 84/242 (34%), Gaps = 76/242 (31%)
Query: 137 NNKIIGAR--YYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARG 194
N +I+G NS N D H GT ST AG G G
Sbjct: 26 NLRILGEYDFVDNSNNTNYTDDDH--------GTAVLSTMAGYT----------PGVMVG 67
Query: 195 GVPNARISMYKVCWSDGCATADI-----------LAAFDDAIADGVDIISVSLG----SD 239
PNA + + T D+ +AA + A + GVDIIS SLG +
Sbjct: 68 TAPNASYYLAR--------TEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDN 119
Query: 240 FPFEY-FED------PIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNF---APWTLTVAA 289
+ Y + D I+ + A G+L NSAGN G + A L+V A
Sbjct: 120 PTYSYTYADMDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGA 179
Query: 290 ----------SSIDRKF--------VAQAVLGNGITYPGLSINSFDLNGISY--PLIWGG 329
SSI +A LG GI N NG S+ PLI G
Sbjct: 180 VDANGNKASFSSIGPTADGRLKPDVMA---LGTGIYVINGDGNITYANGTSFSCPLIAGL 236
Query: 330 DA 331
A
Sbjct: 237 IA 238
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 261 |
| >gnl|CDD|173794 cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 466 ASWSPVAP----PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSA 521
A+W AP S DP+ + +SGTS + PH SG+AA + P + ++
Sbjct: 204 ANWCLAAPGENIYSTDPDGGNG--YGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQT 261
Query: 522 LMTTA 526
L+TTA
Sbjct: 262 LLTTA 266
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. Length = 267 |
| >gnl|CDD|173804 cd07478, Peptidases_S8_CspA-like, Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 0.002
Identities = 48/211 (22%), Positives = 75/211 (35%), Gaps = 58/211 (27%)
Query: 97 VIIGLLDTGIWPESASF-NDKGLS------------PPPAKWKGICTGANFTCNNKIIGA 143
V++G++DTGI F N+ G + PP + I
Sbjct: 6 VLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGPPPG-----GYYGGGEYTEEIIN 60
Query: 144 RYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISM 203
S+N Y++ RD GHGTH + AAG + + G+A P A + +
Sbjct: 61 AALASDNPYDIVPS---RDENGHGTHVAGIAAGNGDNNPDFKGVA--------PEAELIV 109
Query: 204 YKV-----------CWSDGCATADILAAFD--DAIADGVD---IISVSLGSDF------- 240
K+ DI+ A A ++ +I++SLG++F
Sbjct: 110 VKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNKPLVINISLGTNFGSHDGTS 169
Query: 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSG 271
E + D I+ GI AGN G
Sbjct: 170 LLERYIDAISR------LRGIAVVVGAGNEG 194
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 455 |
| >gnl|CDD|173802 cd07476, Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease, Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 44/157 (28%), Positives = 62/157 (39%), Gaps = 21/157 (13%)
Query: 166 HGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAI 225
HGTH +S G+ P +S G+A RG N I GC+ D+ A + A+
Sbjct: 52 HGTHVASLIFGQ--PCSSVEGIAPL-CRG--LNIPIFAED---RRGCSQLDLARAINLAL 103
Query: 226 ADGVDIISVSLG----SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFA 281
G II++S G + + +A+ + +L +AGN G V
Sbjct: 104 EQGAHIINISGGRLTQTGEADPILANAVAM----CQQNNVLIVAAAGNEGCACLHVPAAL 159
Query: 282 PWTLTVAASSID---RKFVAQ-AVLG-NGITYPGLSI 313
P L V A D KF A GI PG +I
Sbjct: 160 PSVLAVGAMDDDGLPLKFSNWGADYRKKGILAPGENI 196
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Length = 267 |
| >gnl|CDD|173793 cd04847, Peptidases_S8_Subtilisin_like_2, Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 29/92 (31%), Positives = 40/92 (43%), Gaps = 14/92 (15%)
Query: 440 FSSRGP---NPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS-----FNIISG 491
+S GP PI KPD+ A G ++ S A T S F + G
Sbjct: 201 TTSSGPGSPGPI-----KPDVVAFGGNLAYDPSGNAADGDLSLLTTLSSPSGGGFVTVGG 255
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALM 523
TS + P A+ AA + A P SP +I+ AL+
Sbjct: 256 TSFAAPLAARLAAGLFAELPELSPETIR-ALL 286
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 291 |
| >gnl|CDD|173797 cd05561, Peptidases_S8_4, Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.002
Identities = 25/88 (28%), Positives = 35/88 (39%), Gaps = 17/88 (19%)
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSP 515
D APGVD+ + AP + +SGTS + P + + A + A P P
Sbjct: 168 DFAAPGVDVWVA----APGG---------GYRYVSGTSFAAPFVTAALALLLQASPLA-P 213
Query: 516 SSIKSALMTTAYVMDS-RKQEDLEFAYG 542
++ L TA D D F YG
Sbjct: 214 DDARARLAATA--KDLGPPGRDPVFGYG 239
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 239 |
| >gnl|CDD|173798 cd05562, Peptidases_S53_like, Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 31/112 (27%), Positives = 38/112 (33%), Gaps = 7/112 (6%)
Query: 215 ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAI-GSFHAMKYGILTSNSAGNSGPD 273
D AA A G DII +G + + PIA G+L +SAGN G
Sbjct: 77 LDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIAQAVDEVVASPGVLYFSSAGNDGQS 136
Query: 274 PYSVS-NFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYP 324
AP + V A + G T SFD GI P
Sbjct: 137 GSIFGHAAAPGAIAVGAVDYGNTPAFGSDPAPGGTPS-----SFDPVGIRLP 183
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functions as a tripeptidyl exopeptidase as well as an endopeptidase. Less is known about PSCP from Pseudomonas which is thought to be an aspartic proteinase. Length = 275 |
| >gnl|CDD|173822 cd07498, Peptidases_S8_15, Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.004
Identities = 49/181 (27%), Positives = 72/181 (39%), Gaps = 14/181 (7%)
Query: 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT-ADIL 218
D +GHGT + AA + G+A G P A++ ++ S G A +DI
Sbjct: 36 TSDIDGHGTACAGVAAAV---GNNGLGVA-----GVAPGAKLMPVRIADSLGYAYWSDIA 87
Query: 219 AAFDDAIADGVDIISVSLGSDFPFEYFEDPI--AIGSFHAMKYGILTSNSAGNSGPDPYS 276
A A +G D+IS S G E I A K G + +AGNSG S
Sbjct: 88 QAITWAADNGADVISNSWGGSDSTESISSAIDNAATYGRNGK-GGVVLFAAGNSGRSVSS 146
Query: 277 VSNFAPWTLTVAASSIDRKFVAQAVLGNGI--TYPGLSINSFDLNGISYPLIWGGDAANY 334
P + VAA+ + + + GN + PG+ I + S GG ++
Sbjct: 147 GYAANPSVIAVAATDSNDARASYSNYGNYVDLVAPGVGIWTTGTGRGSAGDYPGGGYGSF 206
Query: 335 S 335
S
Sbjct: 207 S 207
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Length = 242 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| cd04852 | 307 | Peptidases_S8_3 Peptidase S8 family domain, unchar | 100.0 | |
| cd07478 | 455 | Peptidases_S8_CspA-like Peptidase S8 family domain | 100.0 | |
| PTZ00262 | 639 | subtilisin-like protease; Provisional | 100.0 | |
| cd05562 | 275 | Peptidases_S53_like Peptidase domain in the S53 fa | 100.0 | |
| cd07479 | 255 | Peptidases_S8_SKI-1_like Peptidase S8 family domai | 100.0 | |
| cd07497 | 311 | Peptidases_S8_14 Peptidase S8 family domain, uncha | 100.0 | |
| cd07475 | 346 | Peptidases_S8_C5a_Peptidase Peptidase S8 family do | 100.0 | |
| cd07489 | 312 | Peptidases_S8_5 Peptidase S8 family domain, unchar | 100.0 | |
| cd07476 | 267 | Peptidases_S8_thiazoline_oxidase_subtilisin-like_p | 100.0 | |
| cd07474 | 295 | Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam | 100.0 | |
| cd05561 | 239 | Peptidases_S8_4 Peptidase S8 family domain, unchar | 100.0 | |
| cd07483 | 291 | Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa | 100.0 | |
| cd04857 | 412 | Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid | 100.0 | |
| cd07493 | 261 | Peptidases_S8_9 Peptidase S8 family domain, unchar | 100.0 | |
| cd07481 | 264 | Peptidases_S8_BacillopeptidaseF-like Peptidase S8 | 100.0 | |
| cd07487 | 264 | Peptidases_S8_1 Peptidase S8 family domain, unchar | 100.0 | |
| cd07485 | 273 | Peptidases_S8_Fervidolysin_like Peptidase S8 famil | 100.0 | |
| cd04847 | 291 | Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil | 100.0 | |
| cd07490 | 254 | Peptidases_S8_6 Peptidase S8 family domain, unchar | 100.0 | |
| cd07484 | 260 | Peptidases_S8_Thermitase_like Peptidase S8 family | 100.0 | |
| cd04077 | 255 | Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 | 100.0 | |
| cd07494 | 298 | Peptidases_S8_10 Peptidase S8 family domain, uncha | 100.0 | |
| cd07496 | 285 | Peptidases_S8_13 Peptidase S8 family domain, uncha | 100.0 | |
| cd07498 | 242 | Peptidases_S8_15 Peptidase S8 family domain, uncha | 100.0 | |
| cd04842 | 293 | Peptidases_S8_Kp43_protease Peptidase S8 family do | 100.0 | |
| cd07480 | 297 | Peptidases_S8_12 Peptidase S8 family domain, uncha | 100.0 | |
| cd07477 | 229 | Peptidases_S8_Subtilisin_subset Peptidase S8 famil | 100.0 | |
| cd07473 | 259 | Peptidases_S8_Subtilisin_like Peptidase S8 family | 100.0 | |
| cd04843 | 277 | Peptidases_S8_11 Peptidase S8 family domain, uncha | 100.0 | |
| PF00082 | 282 | Peptidase_S8: Subtilase family This is family S8 i | 100.0 | |
| cd07491 | 247 | Peptidases_S8_7 Peptidase S8 family domain, unchar | 100.0 | |
| cd07482 | 294 | Peptidases_S8_Lantibiotic_specific_protease Peptid | 100.0 | |
| KOG1153 | 501 | consensus Subtilisin-related protease/Vacuolar pro | 100.0 | |
| cd07492 | 222 | Peptidases_S8_8 Peptidase S8 family domain, unchar | 100.0 | |
| cd04059 | 297 | Peptidases_S8_Protein_convertases_Kexins_Furin-lik | 100.0 | |
| cd04848 | 267 | Peptidases_S8_Autotransporter_serine_protease_like | 100.0 | |
| KOG4266 | 1033 | consensus Subtilisin kexin isozyme-1/site 1 protea | 100.0 | |
| KOG1114 | 1304 | consensus Tripeptidyl peptidase II [Posttranslatio | 100.0 | |
| cd07488 | 247 | Peptidases_S8_2 Peptidase S8 family domain, unchar | 100.0 | |
| cd00306 | 241 | Peptidases_S8_S53 Peptidase domain in the S8 and S | 99.97 | |
| COG1404 | 508 | AprE Subtilisin-like serine proteases [Posttransla | 99.91 | |
| KOG3526 | 629 | consensus Subtilisin-like proprotein convertase [P | 99.77 | |
| cd04056 | 361 | Peptidases_S53 Peptidase domain in the S53 family. | 99.69 | |
| cd02133 | 143 | PA_C5a_like PA_C5a_like: Protease-associated domai | 98.93 | |
| cd02120 | 126 | PA_subtilisin_like PA_subtilisin_like: Protease-as | 98.91 | |
| PF06280 | 112 | DUF1034: Fn3-like domain (DUF1034); InterPro: IPR0 | 98.7 | |
| PF05922 | 82 | Inhibitor_I9: Peptidase inhibitor I9; InterPro: IP | 98.35 | |
| KOG3525 | 431 | consensus Subtilisin-like proprotein convertase [P | 98.29 | |
| COG4934 | 1174 | Predicted protease [Posttranslational modification | 98.26 | |
| cd04816 | 122 | PA_SaNapH_like PA_SaNapH_like: Protease-associated | 98.18 | |
| PF02225 | 101 | PA: PA domain; InterPro: IPR003137 The PA (Proteas | 97.99 | |
| cd02122 | 138 | PA_GRAIL_like PA _GRAIL_like: Protease-associated | 97.95 | |
| cd04818 | 118 | PA_subtilisin_1 PA_subtilisin_1: Protease-associat | 97.94 | |
| cd02129 | 120 | PA_hSPPL_like PA_hSPPL_like: Protease-associated d | 97.92 | |
| cd02130 | 122 | PA_ScAPY_like PA_ScAPY_like: Protease-associated d | 97.91 | |
| cd02127 | 118 | PA_hPAP21_like PA_hPAP21_like: Protease-associated | 97.84 | |
| cd00538 | 126 | PA PA: Protease-associated (PA) domain. The PA dom | 97.84 | |
| cd02124 | 129 | PA_PoS1_like PA_PoS1_like: Protease-associated (PA | 97.78 | |
| cd02132 | 139 | PA_GO-like PA_GO-like: Protease-associated domain | 97.75 | |
| cd02126 | 126 | PA_EDEM3_like PA_EDEM3_like: protease associated d | 97.73 | |
| cd02125 | 127 | PA_VSR PA_VSR: Protease-associated (PA) domain-con | 97.66 | |
| cd04813 | 117 | PA_1 PA_1: Protease-associated (PA) domain subgrou | 97.6 | |
| cd04817 | 139 | PA_VapT_like PA_VapT_like: Protease-associated dom | 97.44 | |
| cd04819 | 127 | PA_2 PA_2: Protease-associated (PA) domain subgrou | 97.42 | |
| cd02123 | 153 | PA_C_RZF_like PA_C-RZF_ like: Protease-associated | 97.38 | |
| PF14874 | 102 | PapD-like: Flagellar-associated PapD-like | 96.48 | |
| cd04815 | 134 | PA_M28_2 PA_M28_2: Protease-associated (PA) domain | 96.35 | |
| PF06030 | 121 | DUF916: Bacterial protein of unknown function (DUF | 95.41 | |
| PF10633 | 78 | NPCBM_assoc: NPCBM-associated, NEW3 domain of alph | 94.99 | |
| PF11614 | 118 | FixG_C: IG-like fold at C-terminal of FixG, putati | 94.59 | |
| cd04822 | 151 | PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) do | 94.2 | |
| cd02128 | 183 | PA_TfR PA_TfR: Protease-associated domain containi | 93.81 | |
| cd04820 | 137 | PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) do | 93.53 | |
| cd04814 | 142 | PA_M28_1 PA_M28_1: Protease-associated (PA) domain | 92.71 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 91.01 | |
| PF00345 | 122 | PapD_N: Pili and flagellar-assembly chaperone, Pap | 86.67 | |
| KOG2442 | 541 | consensus Uncharacterized conserved protein, conta | 86.2 | |
| COG1470 | 513 | Predicted membrane protein [Function unknown] | 86.2 | |
| cd02131 | 153 | PA_hNAALADL2_like PA_hNAALADL2_like: Protease-asso | 84.96 | |
| cd02121 | 220 | PA_GCPII_like PA_GCPII_like: Protease-associated d | 84.73 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 83.46 | |
| PF07718 | 140 | Coatamer_beta_C: Coatomer beta C-terminal region; | 83.19 |
| >cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-51 Score=437.66 Aligned_cols=292 Identities=57% Similarity=0.952 Sum_probs=249.9
Q ss_pred cccccCCCccccccccCc-----cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcc---cCceeE
Q 044427 71 LKIHTTRSWDFMGFSKGK-----LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFT---CNNKII 141 (734)
Q Consensus 71 ~~~~~~~s~~~~g~~~~~-----~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~---~n~ki~ 141 (734)
+++++++++++++++..| ..+++|+||+|||||||||++||+|.+....+.+..|.+.|.. ..+. |++|++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~gv~VaViDtGid~~hp~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 80 (307)
T cd04852 1 YQLHTTRSPDFLGLPGAWGGSLLGAANAGEGIIIGVLDTGIWPEHPSFADVGGGPYPHTWPGDCVTGEDFNPFSCNNKLI 80 (307)
T ss_pred CCccccCCHHHcCCCCCCCcccccccCCCCccEEEEEeCCCCCCCcCcccCCCCCCCCCCCCcccCCCCcCccCcCCeEE
Confidence 468899999999999866 4699999999999999999999999998888889999999987 5554 999999
Q ss_pred eeeecCCCCcc-----ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC-CCCCHH
Q 044427 142 GARYYNSENIY-----EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS-DGCATA 215 (734)
Q Consensus 142 g~~~~~~~~~~-----~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~-~g~~~~ 215 (734)
+.++|.++... .+.+..++.|..||||||||||||+...+....|...+.+.||||+|+|+++|+++. ..+..+
T Consensus 81 g~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~VAgiiag~~~~~~~~~~~~~~~~~GvAP~a~l~~~kv~~~~~~~~~~ 160 (307)
T cd04852 81 GARYFSDGYDAYGGFNSDGEYRSPRDYDGHGTHTASTAAGNVVVNASVGGFAFGTASGVAPRARIAVYKVCWPDGGCFGS 160 (307)
T ss_pred EEEEcccchhhccCcccccCCCCCccCCCCchhhhhhhcCCCcccccccccccccEEEECCCCeEEEEEEecCCCCccHH
Confidence 99999876532 123356678899999999999999987766666666677899999999999999998 448889
Q ss_pred HHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCce
Q 044427 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRK 295 (734)
Q Consensus 216 ~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~ 295 (734)
++++||++|++++++|||||||.... ..+.+.+..++..+.++|++||+||||+|+...+.++.+||+++||+++
T Consensus 161 ~~~~ai~~a~~~g~~Vin~S~G~~~~-~~~~~~~~~~~~~a~~~gilvV~aAGN~g~~~~~~~~~~~~vi~Vga~~---- 235 (307)
T cd04852 161 DILAAIDQAIADGVDVISYSIGGGSP-DPYEDPIAIAFLHAVEAGIFVAASAGNSGPGASTVPNVAPWVTTVAAST---- 235 (307)
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCC-CcccCHHHHHHHHHHhCCCEEEEECCCCCCCCCcccCCCCCeEEEEecc----
Confidence 99999999999999999999998832 4566788888888999999999999999987778888889999998621
Q ss_pred eEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhcc
Q 044427 296 FVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAV 375 (734)
Q Consensus 296 ~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~ 375 (734)
T Consensus 236 -------------------------------------------------------------------------------- 235 (307)
T cd04852 236 -------------------------------------------------------------------------------- 235 (307)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCC
Q 044427 376 NGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKP 455 (734)
Q Consensus 376 Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KP 455 (734)
+||
T Consensus 236 -----------------------------------------------------------------------------~~~ 238 (307)
T cd04852 236 -----------------------------------------------------------------------------LKP 238 (307)
T ss_pred -----------------------------------------------------------------------------Ccc
Confidence 467
Q ss_pred cEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 456 DITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 456 DI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
||+|||.+|++++... ...........|..++|||||||+|||++|||+|++|+|+|.+||++|++||+
T Consensus 239 di~apG~~i~~~~~~~---~~~~~~~~~~~~~~~sGTS~AaP~vaG~aALl~~~~p~~t~~~v~~~L~~tA~ 307 (307)
T cd04852 239 DIAAPGVDILAAWTPE---GADPGDARGEDFAFISGTSMASPHVAGVAALLKSAHPDWSPAAIKSALMTTAY 307 (307)
T ss_pred ceeeccCceeecccCc---cccccCCCCCcEEEeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 9999999999998742 11111223478999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07478 Peptidases_S8_CspA-like Peptidase S8 family domain in CspA-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-50 Score=447.20 Aligned_cols=412 Identities=23% Similarity=0.205 Sum_probs=257.5
Q ss_pred CCCCCCEEEEEccCCCCCCCCCCC-CCCCCCCCCcccccccCCcccCceeEeeeecCCC------CccccCCCCCCCCCC
Q 044427 92 SQEGSVIIGLLDTGIWPESASFND-KGLSPPPAKWKGICTGANFTCNNKIIGARYYNSE------NIYEVTDFHSPRDSE 164 (734)
Q Consensus 92 ~~G~GV~VgVIDtGid~~Hp~f~~-~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~------~~~~~~~~~~~~D~~ 164 (734)
++|+||+|||||||||+.||+|++ ++.+++...|++...... ......+...+.+. ...++.+.....|..
T Consensus 1 ltG~GV~VaVIDtGId~~hp~F~~~dg~tRi~~~wDq~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~p~~~~~~~D~~ 78 (455)
T cd07478 1 LTGKGVLVGIIDTGIDYLHPEFRNEDGTTRILYIWDQTIPGGP--PPGGYYGGGEYTEEIINAALASDNPYDIVPSRDEN 78 (455)
T ss_pred CCCCceEEEEEECCCCCCCHHHccCCCCchhHHhhhCcCCCCC--CCccccCceEEeHHHHHHHHhcCCccccCcCCCCC
Confidence 589999999999999999999994 466788889998876511 01111222222211 011233345567899
Q ss_pred CChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-----------CCHHHHHHHHHHHHhC-----C
Q 044427 165 GHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-----------CATADILAAFDDAIAD-----G 228 (734)
Q Consensus 165 gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----------~~~~~i~~ai~~ai~~-----g 228 (734)
||||||||||||+..++ ..+.||||+|+|+++|++...+ +...+++.||+|+++. .
T Consensus 79 GHGThvAGIiag~~~~~--------~~~~GvAp~a~l~~vk~~~~~~~~~~~~~~~~~~~~~~i~~ai~~~~~~a~~~~~ 150 (455)
T cd07478 79 GHGTHVAGIAAGNGDNN--------PDFKGVAPEAELIVVKLKQAKKYLREFYEDVPFYQETDIMLAIKYLYDKALELNK 150 (455)
T ss_pred CchHHHHHHHhcCCCCC--------CCccccCCCCcEEEEEeecCCCcccccccccccCcHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999997542 2248999999999999998765 4688999999999874 4
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHHHhC-CcEEEEcCCCCCCCCCCcCCC-CC------ceEEecccccCceeEEEE
Q 044427 229 VDIISVSLGSDFPFEYFEDPIAIGSFHAMKY-GILTSNSAGNSGPDPYSVSNF-AP------WTLTVAASSIDRKFVAQA 300 (734)
Q Consensus 229 ~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~~~~~~-ap------~vitVga~~~~~~~~~~~ 300 (734)
++|||||||.+.+.+...+.++.++..+..+ |++||+||||+|....+.... .+ --+.|+.... .+...+
T Consensus 151 p~VInlSlG~~~g~~~g~~~l~~~i~~~~~~~gv~vV~aaGNeg~~~~h~~~~~~~~~~~~~ie~~v~~~~~--~~~~ei 228 (455)
T cd07478 151 PLVINISLGTNFGSHDGTSLLERYIDAISRLRGIAVVVGAGNEGNTQHHHSGGIVPNGETKTVELNVGEGEK--GFNLEI 228 (455)
T ss_pred CeEEEEccCcCCCCCCCccHHHHHHHHHHhhCCeEEEEeCCCCCCcCCceeeeeccCCceEEEEEEECCCCc--ceEEEE
Confidence 7899999999877888899999999887765 999999999999754443321 00 0122222110 010000
Q ss_pred EeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEE
Q 044427 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380 (734)
Q Consensus 301 ~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~ 380 (734)
-...... +++.-..+.++..+.+...........|.......|.... .+....|.-.+..+ ......|.|-+
T Consensus 229 W~~~~d~---~~v~i~sP~Ge~~~~i~~~~~~~~~~~~~~~~t~i~v~y~-~~~~~~g~~~i~i~----~~~~~~GiW~i 300 (455)
T cd07478 229 WGDFPDR---FSVSIISPSGESSGRINPGIGGSESYKFVFEGTTVYVYYY-LPEPYTGDQLIFIR----FKNIKPGIWKI 300 (455)
T ss_pred ecCCCCE---EEEEEECCCCCccCccCcCCCcceeEEEEECCeEEEEEEc-CCCCCCCCeEEEEE----ccCCCccceEE
Confidence 0000000 0000000111111111110000000000000011111100 11112222222211 22345578888
Q ss_pred EEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEec----ceeec--CCCCceeeccCCCCCCCCCCCCC
Q 044427 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFG----ETWKD--AMAPKVVSFSSRGPNPITVDILK 454 (734)
Q Consensus 381 i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~----~~~~~--~~~~~~a~fSS~Gpt~~~~~~~K 454 (734)
.++.....+-..+.|+|...+..++..++. .....+.++... .++.. ...+.++.||||||+. ++++|
T Consensus 301 ~~~~~~~~~g~~~~Wlp~~~~~~~~t~f~~----~~~~~tit~Pa~~~~vitVga~~~~~~~~~~~Ss~G~~~--~~~~k 374 (455)
T cd07478 301 RLTGVSITDGRFDAWLPSRGLLSENTRFLE----PDPYTTLTIPGTARSVITVGAYNQNNNSIAIFSGRGPTR--DGRIK 374 (455)
T ss_pred EEEeccCCCceEEEEecCcCcCCCCCEeec----CCCCceEecCCCCCCcEEEEEEeCCCCcccCccCCCcCC--CCCcC
Confidence 887766544455667776555544433332 222222222111 12222 3345699999999998 89999
Q ss_pred CcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhC------CCCCHHHHHHHHHhcccc
Q 044427 455 PDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH------PNWSPSSIKSALMTTAYV 528 (734)
Q Consensus 455 PDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~------P~ls~~~vk~~L~~TA~~ 528 (734)
|||+|||++|+++.+. +.|..++|||||||||||++|||+|.+ |.|++++||++|++||++
T Consensus 375 pdi~APG~~i~s~~~~-------------~~~~~~sGTS~Aap~vaG~aALl~~~~~~~~~~p~~~~~~ik~~L~~tA~~ 441 (455)
T cd07478 375 PDIAAPGVNILTASPG-------------GGYTTRSGTSVAAAIVAGACALLLQWGIVRGNDPYLYGEKIKTYLIRGARR 441 (455)
T ss_pred ceEEecCCCEEEeecC-------------CcEEeeCcHHHHHHHHHHHHHHHHHhchhccCCCCCCHHHHHHHHHHhCcc
Confidence 9999999999999986 789999999999999999999999965 567999999999999999
Q ss_pred ccCCCcccCCCCCCCC
Q 044427 529 MDSRKQEDLEFAYGSG 544 (734)
Q Consensus 529 ~~~~~~~~~~~~~G~G 544 (734)
+....+ ++++||||
T Consensus 442 ~~~~~~--pn~~~GyG 455 (455)
T cd07478 442 RPGDEY--PNPEWGYG 455 (455)
T ss_pred CCCCCC--CCCCCCCC
Confidence 874433 48999998
|
GSP (germination-specific protease) converts the spore peptidoglycan hydrolase (SleC) precursor to an active enzyme during germination of Clostridium perfringens S40 spores. Analysis of an enzyme fraction of GSP showed that it was composed of a gene cluster containing the processed forms of products of cspA, cspB, and cspC which are positioned in a tandem array just upstream of the 5' end of sleC. The amino acid sequences deduced from the nucleotide sequences of the csp genes showed significant similarity and showed a high degree of homology with those of the catalytic domain and the oxyanion binding region of subtilisin-like serine proteases. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure |
| >PTZ00262 subtilisin-like protease; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=442.77 Aligned_cols=292 Identities=19% Similarity=0.186 Sum_probs=210.8
Q ss_pred cccccCc--cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcc-cCce---eEeeeecCCCCccccC
Q 044427 82 MGFSKGK--LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFT-CNNK---IIGARYYNSENIYEVT 155 (734)
Q Consensus 82 ~g~~~~~--~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~-~n~k---i~g~~~~~~~~~~~~~ 155 (734)
++++++| ..+.+|+||+|||||||||++||+|.+.-. ..+....+. ..++ .++. -+.+++|.++.
T Consensus 301 i~~~~aw~~~~~~~g~gV~VAVIDTGID~~HPDL~~ni~-~n~~el~Gr---dgiDdD~nG~vdd~~G~nfVd~~----- 371 (639)
T PTZ00262 301 TRLDETQELIEPHEVNDTNICVIDSGIDYNHPDLHDNID-VNVKELHGR---KGIDDDNNGNVDDEYGANFVNND----- 371 (639)
T ss_pred hCchHHHHHhhccCCCCcEEEEEccCCCCCChhhhhhcc-cccccccCc---cccccccCCcccccccccccCCC-----
Confidence 3444455 456789999999999999999999985421 000000010 0000 0100 12234444332
Q ss_pred CCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEE
Q 044427 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISV 234 (734)
Q Consensus 156 ~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINl 234 (734)
..|.|..||||||||||||...++ .| +.||||+|+|+++|+++..+ +..+++++||+||++.|++||||
T Consensus 372 --~~P~D~~GHGTHVAGIIAA~gnN~-------~G-i~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINm 441 (639)
T PTZ00262 372 --GGPMDDNYHGTHVSGIISAIGNNN-------IG-IVGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMING 441 (639)
T ss_pred --CCCCCCCCcchHHHHHHhccccCC-------Cc-eeeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEe
Confidence 456889999999999999976432 12 38999999999999998766 78899999999999999999999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--------------CC----CCCceEEecccccCcee
Q 044427 235 SLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--------------SN----FAPWTLTVAASSIDRKF 296 (734)
Q Consensus 235 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--------------~~----~ap~vitVga~~~~~~~ 296 (734)
|||+.. ....+..++.+|.++|++||+||||+|...... +. ..|++|+|||...+.
T Consensus 442 SlG~~~----~s~~l~~AV~~A~~kGILVVAAAGN~g~~~~s~p~~~~~d~~~~~~YPaa~s~~~~nVIaVGAv~~d~-- 515 (639)
T PTZ00262 442 SFSFDE----YSGIFNESVKYLEEKGILFVVSASNCSHTKESKPDIPKCDLDVNKVYPPILSKKLRNVITVSNLIKDK-- 515 (639)
T ss_pred ccccCC----ccHHHHHHHHHHHHCCCEEEEeCCCCCCCcccccccccccccccccCChhhhccCCCEEEEeeccCCC--
Confidence 999762 234677888899999999999999998643211 11 124455555532110
Q ss_pred EEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccC
Q 044427 297 VAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVN 376 (734)
Q Consensus 297 ~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~G 376 (734)
T Consensus 516 -------------------------------------------------------------------------------- 515 (639)
T PTZ00262 516 -------------------------------------------------------------------------------- 515 (639)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCc
Q 044427 377 GLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPD 456 (734)
Q Consensus 377 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPD 456 (734)
...-.++.||++|. .++|
T Consensus 516 -------------------------------------------------------~~~~s~s~~Snyg~-------~~VD 533 (639)
T PTZ00262 516 -------------------------------------------------------NNQYSLSPNSFYSA-------KYCQ 533 (639)
T ss_pred -------------------------------------------------------CCcccccccccCCC-------Ccce
Confidence 00012345566652 2359
Q ss_pred EEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCccc
Q 044427 457 ITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQED 536 (734)
Q Consensus 457 I~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~ 536 (734)
|+|||++|+++++. +.|..++|||||||||||+||||++++|+|++.+|+++|++||.++...
T Consensus 534 IaAPG~dI~St~p~-------------g~Y~~~SGTSmAAP~VAGvAALLlS~~P~LT~~qV~~iL~~TA~~l~~~---- 596 (639)
T PTZ00262 534 LAAPGTNIYSTFPK-------------NSYRKLNGTSMAAPHVAAIASLILSINPSLSYEEVIRILKESIVQLPSL---- 596 (639)
T ss_pred EEeCCCCeeeccCC-------------CceeecCCCchhHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhCccCCCC----
Confidence 99999999999886 6799999999999999999999999999999999999999999887543
Q ss_pred CCCCCCC-CccCccccCCCceec
Q 044427 537 LEFAYGS-GHINPAQAIDPGLVY 558 (734)
Q Consensus 537 ~~~~~G~-G~vn~~~Al~~~lv~ 558 (734)
+..+|| |+||+++|++.++-+
T Consensus 597 -~n~~~wgG~LDa~kAV~~Ai~~ 618 (639)
T PTZ00262 597 -KNKVKWGGYLDIHHAVNLAIAS 618 (639)
T ss_pred -CCccccCcEEcHHHHHHHHHhc
Confidence 233343 899999999876544
|
|
| >cd05562 Peptidases_S53_like Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=411.79 Aligned_cols=271 Identities=24% Similarity=0.245 Sum_probs=205.7
Q ss_pred CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHH
Q 044427 91 SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHT 170 (734)
Q Consensus 91 ~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThV 170 (734)
+++|+||+|+|||||||.+||++.+...+..+..+ .+... .....|..+|||||
T Consensus 1 g~tG~gv~vaviDtGvd~~~~~~~~~~~~~l~~~~-------------------~~~~~-------~~~~~d~~gHGT~v 54 (275)
T cd05562 1 GVDGTGIKIGVISDGFDGLGDAADDQASGDLPGNV-------------------NVLGD-------LDGGSGGGDEGRAM 54 (275)
T ss_pred CCCCCceEEEEEeCCccccccccccccCCCCCcce-------------------eeccc-------cCCCCCCCchHHHH
Confidence 57999999999999999999865322111111111 11111 13456788999999
Q ss_pred HHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHH
Q 044427 171 SSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA 250 (734)
Q Consensus 171 AGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~ 250 (734)
|||| .||||+|+|+.+|+. ...+++++||+||+++|++|||||||......+....+.
T Consensus 55 Agii------------------~GvAP~a~l~~~~~~----~~~~~i~~ai~~a~~~g~~Vin~S~g~~~~~~~~~~~~~ 112 (275)
T cd05562 55 LEII------------------HDIAPGAELAFHTAG----GGELDFAAAIRALAAAGADIIVDDIGYLNEPFFQDGPIA 112 (275)
T ss_pred HHHH------------------hccCCCCEEEEEecC----CCHHHHHHHHHHHHHcCCCEEEecccccCCCcccCCHHH
Confidence 9999 488999999999874 357889999999999999999999998743323345678
Q ss_pred HHHHHHHhC-CcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEc
Q 044427 251 IGSFHAMKY-GILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWG 328 (734)
Q Consensus 251 ~a~~~a~~~-Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~ 328 (734)
.++.++.++ |++||+||||+|.... ..+...|++|+|||.+....... +
T Consensus 113 ~ai~~a~~~~GvlvVaAAGN~g~~~~~~~Pa~~~~vitVgA~~~~~~~~~----------------------------~- 163 (275)
T cd05562 113 QAVDEVVASPGVLYFSSAGNDGQSGSIFGHAAAPGAIAVGAVDYGNTPAF----------------------------G- 163 (275)
T ss_pred HHHHHHHHcCCcEEEEeCCCCCCCCCccCCCCCCCeEEEEeeccCCCccc----------------------------c-
Confidence 888888887 9999999999998543 34567899999999764421000 0
Q ss_pred CCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHH
Q 044427 329 GDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQD 408 (734)
Q Consensus 329 ~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~ 408 (734)
.|.. .
T Consensus 164 ----------------s~~~----------------------------~------------------------------- 168 (275)
T cd05562 164 ----------------SDPA----------------------------P------------------------------- 168 (275)
T ss_pred ----------------cccc----------------------------c-------------------------------
Confidence 0000 0
Q ss_pred HHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCC-CEeeccCCCCCCCCCCCCCCCcceE
Q 044427 409 ILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGV-DILASWSPVAPPSLDPEDTRSVSFN 487 (734)
Q Consensus 409 l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~~~~~~~~~y~ 487 (734)
.......+.|+++||+. ++++||||+|||+ ++.+.+.. +.|.
T Consensus 169 ----------------------~~~~s~~~~~~~~~p~~--~~~~~~di~Apgg~~~~~~~~~-------------~~~~ 211 (275)
T cd05562 169 ----------------------GGTPSSFDPVGIRLPTP--EVRQKPDVTAPDGVNGTVDGDG-------------DGPP 211 (275)
T ss_pred ----------------------CCCcccccCCcccCcCC--CCCcCCeEEcCCcccccCCCcC-------------Ccee
Confidence 00011356688999987 8899999999975 44554443 6799
Q ss_pred EeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 488 ~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
.++|||||||||||++|||+|++|+|++++||++|++||+++...+. +..||||+||+.+|++
T Consensus 212 ~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---d~~~G~G~vda~~Av~ 274 (275)
T cd05562 212 NFFGTSAAAPHAAGVAALVLSANPGLTPADIRDALRSTALDMGEPGY---DNASGSGLVDADRAVA 274 (275)
T ss_pred ecccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCC---CCCcCcCcccHHHHhh
Confidence 99999999999999999999999999999999999999999875543 7899999999999986
|
Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi |
| >cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-48 Score=402.42 Aligned_cols=243 Identities=24% Similarity=0.348 Sum_probs=198.2
Q ss_pred ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCCh
Q 044427 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHG 167 (734)
Q Consensus 88 ~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHG 167 (734)
|..+++|+||+|||||||||.+||+|.+. ....+|.+. ....|..|||
T Consensus 1 W~~g~tG~gv~VaviDsGv~~~hp~l~~~------------------------~~~~~~~~~--------~~~~d~~gHG 48 (255)
T cd07479 1 WQLGYTGAGVKVAVFDTGLAKDHPHFRNV------------------------KERTNWTNE--------KTLDDGLGHG 48 (255)
T ss_pred CCCCCCCCCCEEEEEeCCCCCCCcchhcc------------------------ccccccCCC--------CCCCCCCCcH
Confidence 67899999999999999999999999631 011122221 2455788999
Q ss_pred HHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCC
Q 044427 168 THTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFE 246 (734)
Q Consensus 168 ThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~ 246 (734)
|||||||+|+.. .+.||||+|+|+.+|++.+.+ ...++++++|+||+++++||||||||... +..
T Consensus 49 T~VAGiIa~~~~-----------~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~---~~~ 114 (255)
T cd07479 49 TFVAGVIASSRE-----------QCLGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD---FMD 114 (255)
T ss_pred HHHHHHHHccCC-----------CceeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC---CCC
Confidence 999999998742 138999999999999998776 56778999999999999999999999862 344
Q ss_pred CHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceee
Q 044427 247 DPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYP 324 (734)
Q Consensus 247 ~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~p 324 (734)
.++..++.++.++|++||+||||+|+...+. +...+++|+|||...+
T Consensus 115 ~~~~~~~~~~~~~gi~vV~aaGN~g~~~~~~~~Pa~~~~vi~Vga~~~~------------------------------- 163 (255)
T cd07479 115 KPFVDKVWELTANNIIMVSAIGNDGPLYGTLNNPADQMDVIGVGGIDFD------------------------------- 163 (255)
T ss_pred cHHHHHHHHHHHCCcEEEEEcCCCCCCcccccCcccCCCceEEeeeccC-------------------------------
Confidence 5677777788899999999999999764443 3445788888874321
Q ss_pred eEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeecc
Q 044427 325 LIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKE 404 (734)
Q Consensus 325 l~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~ 404 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (255)
T cd07479 164 -------------------------------------------------------------------------------- 163 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCC----CCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 405 NGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNP----ITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 405 ~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~----~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.|||+|++. ...+++||||.|||.+|+++...
T Consensus 164 ------------------------------~~~~~~S~~g~~~~~~p~~~g~~~~di~apG~~i~~~~~~---------- 203 (255)
T cd07479 164 ------------------------------DNIARFSSRGMTTWELPGGYGRVKPDIVTYGSGVYGSKLK---------- 203 (255)
T ss_pred ------------------------------CccccccCCCCCcccccCCCCCcCccEEecCCCeeccccC----------
Confidence 3678899999642 12678999999999999987664
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCC----CCCHHHHHHHHHhcccccc
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHP----NWSPSSIKSALMTTAYVMD 530 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P----~ls~~~vk~~L~~TA~~~~ 530 (734)
+.|..++|||||||||||++|||+|++| .++|.+||++|++||+++.
T Consensus 204 ---~~~~~~sGTS~AaP~VaG~aAll~s~~p~~~~~~~p~~vk~~L~~sA~~~~ 254 (255)
T cd07479 204 ---GGCRALSGTSVASPVVAGAVALLLSTVPEKRDLINPASMKQALIESATRLP 254 (255)
T ss_pred ---CCeEEeccHHHHHHHHHHHHHHHHHhCccccCCCCHHHHHHHHHhhcccCC
Confidence 6788999999999999999999999998 7999999999999998864
|
SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem |
| >cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=408.28 Aligned_cols=287 Identities=26% Similarity=0.249 Sum_probs=191.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|+|||||||++||+|.+... ..|... |++..++..+.++..+ ....+.|..|||||||||
T Consensus 1 G~gV~VaViDTGid~~HPdl~~~~~----~~~~~~-----~d~~~~~~~g~d~~~~------~~~~~~D~~gHGThvAGi 65 (311)
T cd07497 1 GEGVVIAIVDTGVDYSHPDLDIYGN----FSWKLK-----FDYKAYLLPGMDKWGG------FYVIMYDFFSHGTSCASV 65 (311)
T ss_pred CCCeEEEEEeCCcCCCChhHhcccC----CCcccc-----cCcCCCccCCcCCCCC------ccCCCCCccccchhHHHH
Confidence 8999999999999999999964321 011111 1111112222222211 113467899999999999
Q ss_pred hccCCCCCCcccccc-ccceeeecCCCeEEEEEEecCCC-CCHHHHHH-------HHHHH--HhCCCcEEEEccCCCCCC
Q 044427 174 AAGREVPHASYYGLA-EGTARGGVPNARISMYKVCWSDG-CATADILA-------AFDDA--IADGVDIISVSLGSDFPF 242 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~-~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~-------ai~~a--i~~g~dVINlSlG~~~~~ 242 (734)
|||+.....+.+++. ...+.||||+|+|+.+|++...+ .....+.. +++|+ .+++++|||||||.....
T Consensus 66 iag~~~~~~~~~~~~~~~g~~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~ 145 (311)
T cd07497 66 AAGRGKMEYNLYGYTGKFLIRGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFA 145 (311)
T ss_pred HhccCcccccccccccccceeeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCC
Confidence 999864322222111 12359999999999999997543 32222222 34444 367999999999986321
Q ss_pred C----CCCCHHHHHHHHH-HhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeeccc
Q 044427 243 E----YFEDPIAIGSFHA-MKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINS 315 (734)
Q Consensus 243 ~----~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (734)
. ...+..+...+.+ .++|+++|+||||+|+...++ +..++++|+|||++........
T Consensus 146 ~~~~~~g~~~~~~~~d~~~~~~Gv~vV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~~~~~~~---------------- 209 (311)
T cd07497 146 YTGYAPGLDISSLVIDALVTYTGVPIVSAAGNGGPGYGTITAPGAASLAISVGAATNFDYRPFY---------------- 209 (311)
T ss_pred ccccccCcCHHHHHHHHHHhcCCCEEEEeCCCCCCCCccccCccCCCCeEEEEeccCCcccchh----------------
Confidence 1 1122333333332 489999999999999865444 4457899999997643110000
Q ss_pred CCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcC
Q 044427 316 FDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYP 395 (734)
Q Consensus 316 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 395 (734)
.+.. +.
T Consensus 210 --------~~~~------------------~~------------------------------------------------ 215 (311)
T cd07497 210 --------LFGY------------------LP------------------------------------------------ 215 (311)
T ss_pred --------hhcc------------------cc------------------------------------------------
Confidence 0000 00
Q ss_pred cceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCC
Q 044427 396 LPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS 475 (734)
Q Consensus 396 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~ 475 (734)
...+.++.||||||+. ++++||||+|||++|+++.+......
T Consensus 216 ------------------------------------~~~~~~~~fSs~Gp~~--~g~~kPdv~ApG~~i~s~~~~~~~~~ 257 (311)
T cd07497 216 ------------------------------------GGSGDVVSWSSRGPSI--AGDPKPDLAAIGAFAWAPGRVLDSGG 257 (311)
T ss_pred ------------------------------------CCCCCccccccCCCCc--ccCCCCceeccCcceEeecccCCCCc
Confidence 1234789999999998 89999999999999999876532100
Q ss_pred CCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC------CCCHHHHHHHHHhcc
Q 044427 476 LDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP------NWSPSSIKSALMTTA 526 (734)
Q Consensus 476 ~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P------~ls~~~vk~~L~~TA 526 (734)
.......|..++|||||||||||++|||+|++| .++|++||++|++||
T Consensus 258 ---~~~~~~~y~~~sGTSmAaP~VaG~aALll~~~~~~~~~~~~~~~~vk~~L~~tA 311 (311)
T cd07497 258 ---ALDGNEAFDLFGGTSMATPMTAGSAALVISALKEKEGVGEYDPFLVRTILMSTA 311 (311)
T ss_pred ---ccCCCcceeeecchhhhhHHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHHHhcC
Confidence 011125799999999999999999999999876 689999999999997
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-47 Score=412.74 Aligned_cols=308 Identities=29% Similarity=0.321 Sum_probs=230.9
Q ss_pred CccCCC-CCCCCEEEEEccCCCCCCCCCCCCCCCCCCC-----Cccccccc-CCcccCceeEeeeecCCCCccccCCCCC
Q 044427 87 GKLSSS-QEGSVIIGLLDTGIWPESASFNDKGLSPPPA-----KWKGICTG-ANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 87 ~~~~~~-~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~-----~w~~~~~~-~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
.|..+. +|+||+|+|||||||++||+|.+....+... .+...+.. .....+.+++.+++|.+..... ..
T Consensus 2 ~w~~~~~~G~gv~VaViDtGv~~~hp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (346)
T cd07475 2 LWDKGGYKGEGMVVAVIDSGVDPTHDAFRLDDDSKAKYSEEFEAKKKKAGIGYGKYYNEKVPFAYNYADNNDDI----LD 77 (346)
T ss_pred hhhhcCCCCCCcEEEEEeCCCCCCChhHccCCCcccccchhhhhhhhcccCCCCcccccCCCeeEcCCCCCCcc----CC
Confidence 454444 9999999999999999999998654332111 11122211 2223678888888888764211 11
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC--C-CCCHHHHHHHHHHHHhCCCcEEEEcc
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS--D-GCATADILAAFDDAIADGVDIISVSL 236 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~--~-g~~~~~i~~ai~~ai~~g~dVINlSl 236 (734)
..|..+|||||||||+|...+.. ....+.||||+|+|+.+|+++. . ..+...+++|++++++.|++||||||
T Consensus 78 ~~~~~~HGT~vagiiag~~~~~~-----~~~~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~ 152 (346)
T cd07475 78 EDDGSSHGMHVAGIVAGNGDEED-----NGEGIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSL 152 (346)
T ss_pred CCCCCCcHHHHHHHHhcCCCccc-----cCCceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECC
Confidence 45788999999999999875321 1224599999999999999973 3 37788899999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC----------------CCCCceEEecccccCceeEEEE
Q 044427 237 GSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS----------------NFAPWTLTVAASSIDRKFVAQA 300 (734)
Q Consensus 237 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~----------------~~ap~vitVga~~~~~~~~~~~ 300 (734)
|...........+..++.++.++|++||+||||+|....... ...+++|+||+....
T Consensus 153 G~~~~~~~~~~~~~~~~~~a~~~giliv~aAGN~g~~~~~~~~~~~~~~~~~~~~~~p~~~~~~i~Vga~~~~------- 225 (346)
T cd07475 153 GSTAGFVDLDDPEQQAIKRAREAGVVVVVAAGNDGNSGSGTSKPLATNNPDTGTVGSPATADDVLTVASANKK------- 225 (346)
T ss_pred CcCCCCCCCCCHHHHHHHHHhhCCeEEEEeCCCCCccCccccCcccccCCCcceecCCccCCCceEEeecccc-------
Confidence 998544456677888888999999999999999986543211 123344444443200
Q ss_pred EeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEE
Q 044427 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380 (734)
Q Consensus 301 ~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~ 380 (734)
T Consensus 226 -------------------------------------------------------------------------------- 225 (346)
T cd07475 226 -------------------------------------------------------------------------------- 225 (346)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEec
Q 044427 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAP 460 (734)
Q Consensus 381 i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~AP 460 (734)
......+.++.||+|||+. ..++||||+||
T Consensus 226 ------------------------------------------------~~~~~~~~~~~~S~~G~~~--~~~~~pdi~ap 255 (346)
T cd07475 226 ------------------------------------------------VPNPNGGQMSGFSSWGPTP--DLDLKPDITAP 255 (346)
T ss_pred ------------------------------------------------cCCCCCCccCCCcCCCCCc--ccCcCCeEEeC
Confidence 0002235788999999998 89999999999
Q ss_pred CCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhh----CCCCCHHH----HHHHHHhccccccC-
Q 044427 461 GVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAA----HPNWSPSS----IKSALMTTAYVMDS- 531 (734)
Q Consensus 461 G~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~----~P~ls~~~----vk~~L~~TA~~~~~- 531 (734)
|.+|+++... +.|..++|||||||+|||++|||+|+ +|.|++.+ ||.+|++||.+...
T Consensus 256 G~~i~s~~~~-------------~~~~~~~GTS~AaP~VaG~aALl~~~~~~~~p~l~~~~~~~~ik~~l~~ta~~~~~~ 322 (346)
T cd07475 256 GGNIYSTVND-------------NTYGYMSGTSMASPHVAGASALVKQRLKEKYPKLSGEELVDLVKNLLMNTATPPLDS 322 (346)
T ss_pred CCCeEEecCC-------------CceEeeCcHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHhcCCccccc
Confidence 9999998775 67899999999999999999999997 78999876 78899999985322
Q ss_pred --CCcccCCCCCCCCccCccccCC
Q 044427 532 --RKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 532 --~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
.+..+.+..+|+|+||+.+||+
T Consensus 323 ~~~~~~~~~~~~G~G~vn~~~Av~ 346 (346)
T cd07475 323 EDTKTYYSPRRQGAGLIDVAKAIA 346 (346)
T ss_pred CCCCccCCccccCcchhcHHHhhC
Confidence 2223357788999999999985
|
Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr |
| >cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-46 Score=401.63 Aligned_cols=285 Identities=28% Similarity=0.394 Sum_probs=225.8
Q ss_pred cccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCc---cccCCCCCC
Q 044427 84 FSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI---YEVTDFHSP 160 (734)
Q Consensus 84 ~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~---~~~~~~~~~ 160 (734)
++..|..+++|+||+|||||+|||++||+|.+.... +.++.+.++|..+.. ..+.+...+
T Consensus 2 v~~~~~~g~tG~gv~VaViDsGid~~hp~l~~~~~~-----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~ 64 (312)
T cd07489 2 VDKLHAEGITGKGVKVAVVDTGIDYTHPALGGCFGP-----------------GCKVAGGYDFVGDDYDGTNPPVPDDDP 64 (312)
T ss_pred hhhHHhCCCCCCCCEEEEEECCCCCCChhhhcCCCC-----------------CceeccccccCCcccccccCCCCCCCC
Confidence 455678899999999999999999999999754211 122334444443221 111223456
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|...+ .| +.||||+|+|+.+|++...+ .....++++|++|++++++|||||||..
T Consensus 65 ~d~~gHGT~vAgiia~~~~~----~~-----~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~ 135 (312)
T cd07489 65 MDCQGHGTHVAGIIAANPNA----YG-----FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGP 135 (312)
T ss_pred CCCCCcHHHHHHHHhcCCCC----Cc-----eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcC
Confidence 67899999999999998643 12 38999999999999998665 6677789999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSF 316 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (734)
. .+....+..++.++.++|+++|+||||+|.... ..+...+++|+||+.+
T Consensus 136 ~--~~~~~~~~~~~~~~~~~gv~iv~aaGN~g~~~~~~~~~p~~~~~vi~Vga~~------------------------- 188 (312)
T cd07489 136 S--GWSEDPWAVVASRIVDAGVVVTIAAGNDGERGPFYASSPASGRGVIAVASVD------------------------- 188 (312)
T ss_pred C--CCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCcccCCccCCCeEEEEEec-------------------------
Confidence 3 445577888888899999999999999986542 2233456777776521
Q ss_pred CCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCc
Q 044427 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPL 396 (734)
Q Consensus 317 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 396 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (312)
T cd07489 189 -------------------------------------------------------------------------------- 188 (312)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCC
Q 044427 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSL 476 (734)
Q Consensus 397 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 476 (734)
+.||+|||+. +...||||+|||++++++++..
T Consensus 189 -----------------------------------------~~~s~~g~~~--~~~~kpdv~ApG~~i~~~~~~~----- 220 (312)
T cd07489 189 -----------------------------------------SYFSSWGPTN--ELYLKPDVAAPGGNILSTYPLA----- 220 (312)
T ss_pred -----------------------------------------CCccCCCCCC--CCCcCccEEcCCCCEEEeeeCC-----
Confidence 4579999998 7899999999999999988762
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhC-CCCCHHHHHHHHHhccccccCCCcc------cCCCCCCCCccCcc
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH-PNWSPSSIKSALMTTAYVMDSRKQE------DLEFAYGSGHINPA 549 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-P~ls~~~vk~~L~~TA~~~~~~~~~------~~~~~~G~G~vn~~ 549 (734)
.+.|..++|||||||+|||++|||+|++ |.+++.+||++|++||.++...+.. .++.++|||+||+.
T Consensus 221 ------~~~~~~~~GTS~Aap~vaG~~Al~~~~~~~~~~~~~v~~~l~~ta~~~~~~~~~~~~~~~~~~~~~G~G~vn~~ 294 (312)
T cd07489 221 ------GGGYAVLSGTSMATPYVAGAAALLIQARHGKLSPAELRDLLASTAKPLPWSDGTSALPDLAPVAQQGAGLVNAY 294 (312)
T ss_pred ------CCceEeeccHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCccccccCCCccccCCCCHhhcCcceeeHH
Confidence 1469999999999999999999999999 9999999999999999987654322 23578999999999
Q ss_pred ccCCCc
Q 044427 550 QAIDPG 555 (734)
Q Consensus 550 ~Al~~~ 555 (734)
+|++..
T Consensus 295 ~a~~~~ 300 (312)
T cd07489 295 KALYAT 300 (312)
T ss_pred HHhcCC
Confidence 999954
|
gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=384.53 Aligned_cols=248 Identities=25% Similarity=0.265 Sum_probs=203.6
Q ss_pred ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCCh
Q 044427 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHG 167 (734)
Q Consensus 88 ~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHG 167 (734)
|..+++|+||+|||||+|||++||+|.+..+.+ ...+.. ......|..+||
T Consensus 3 w~~g~~g~gV~VaViDsGid~~hp~l~~~~~~~----------------------~~~~~~-------~~~~~~~~~gHG 53 (267)
T cd07476 3 FAFGGGDPRITIAILDGPVDRTHPCFRGANLTP----------------------LFTYAA-------AACQDGGASAHG 53 (267)
T ss_pred eeccCCCCCeEEEEeCCCcCCCChhhCCCcccc----------------------ccCccc-------cCCCCCCCCCcH
Confidence 678899999999999999999999997542211 001110 013445678999
Q ss_pred HHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCC
Q 044427 168 THTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFEYF 245 (734)
Q Consensus 168 ThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~ 245 (734)
|||||||+|+... .+.||||+|+|+.+|++...+ ++..++++||+||+++|++|||||||........
T Consensus 54 T~VAgii~g~~~~----------~~~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~~~~ 123 (267)
T cd07476 54 THVASLIFGQPCS----------SVEGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQTGEA 123 (267)
T ss_pred HHHHHHHhcCCCC----------CceeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCCCCC
Confidence 9999999987521 248999999999999987654 4477899999999999999999999986433344
Q ss_pred CCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeee
Q 044427 246 EDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPL 325 (734)
Q Consensus 246 ~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl 325 (734)
...+..++.++.++|++||+||||+|.....++...|++|+||+++..
T Consensus 124 ~~~l~~a~~~a~~~gvlvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------------- 171 (267)
T cd07476 124 DPILANAVAMCQQNNVLIVAAAGNEGCACLHVPAALPSVLAVGAMDDD-------------------------------- 171 (267)
T ss_pred CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCcccCCceEEEEeecCC--------------------------------
Confidence 566788888899999999999999998777777778999999985321
Q ss_pred EEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccc
Q 044427 326 IWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKEN 405 (734)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~ 405 (734)
T Consensus 172 -------------------------------------------------------------------------------- 171 (267)
T cd07476 172 -------------------------------------------------------------------------------- 171 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcc
Q 044427 406 GQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVS 485 (734)
Q Consensus 406 ~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~ 485 (734)
+.++.||+||+.. .||||+|||.+|+++.+. +.
T Consensus 172 -----------------------------~~~~~~s~~g~~~-----~~~~l~ApG~~i~~~~~~-------------~~ 204 (267)
T cd07476 172 -----------------------------GLPLKFSNWGADY-----RKKGILAPGENILGAALG-------------GE 204 (267)
T ss_pred -----------------------------CCeeeecCCCCCC-----CCceEEecCCCceeecCC-------------CC
Confidence 2467899999864 388999999999999876 67
Q ss_pred eEEeccccchhhHHHHHHHHHHhhCCC----CCHHHHHHHHHhccccccCCC
Q 044427 486 FNIISGTSMSCPHASGSAAYVKAAHPN----WSPSSIKSALMTTAYVMDSRK 533 (734)
Q Consensus 486 y~~~sGTSmAaP~VAG~aALl~q~~P~----ls~~~vk~~L~~TA~~~~~~~ 533 (734)
|..++|||||||||||++|||+|.+|. +++++||++|++||++++..+
T Consensus 205 ~~~~sGTS~AaP~vaG~aALl~s~~~~~~~~~~~~~vk~~L~~tA~~~~~~~ 256 (267)
T cd07476 205 VVRRSGTSFAAAIVAGIAALLLSLQLRRGAPPDPLAVRRALLETATPCDPEA 256 (267)
T ss_pred eEEeccHHHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHhCccCCCcc
Confidence 999999999999999999999999886 999999999999999987643
|
Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). |
| >cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-45 Score=388.78 Aligned_cols=282 Identities=37% Similarity=0.551 Sum_probs=219.0
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccC--------CCCCCCCCCC
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT--------DFHSPRDSEG 165 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~--------~~~~~~D~~g 165 (734)
|+||+|||||+|||++||+|.+... .+.++...++|......... ......|..+
T Consensus 1 G~gV~VaViDsGi~~~hp~l~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (295)
T cd07474 1 GKGVKVAVIDTGIDYTHPDLGGPGF-----------------PNDKVKGGYDFVDDDYDPMDTRPYPSPLGDASAGDATG 63 (295)
T ss_pred CCCCEEEEEECCcCCCCcccccCCC-----------------CCCceeeeeECccCCCCcccccccccccccCCCCCCCC
Confidence 8999999999999999999974321 13445555555543211100 0122456889
Q ss_pred ChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC
Q 044427 166 HGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEY 244 (734)
Q Consensus 166 HGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~ 244 (734)
|||||||+|+|...+. ..+.|+||+|+|+.+|+++..+ +...++++||+|+++++++|||||||... ..
T Consensus 64 HGT~vAgiiag~~~n~--------~~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~--~~ 133 (295)
T cd07474 64 HGTHVAGIIAGNGVNV--------GTIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSV--NG 133 (295)
T ss_pred cHHHHHHHHhcCCCcc--------CceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCC--CC
Confidence 9999999999986441 2348999999999999998544 77889999999999999999999999873 33
Q ss_pred CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 245 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
..+.+..++.++.++|+++|+||||+|...... +...+++|+||++.....
T Consensus 134 ~~~~~~~~~~~~~~~gil~V~aAGN~g~~~~~~~~pa~~~~~i~Vga~~~~~~--------------------------- 186 (295)
T cd07474 134 PDDPDAIAINNAVKAGVVVVAAAGNSGPAPYTIGSPATAPSAITVGASTVADV--------------------------- 186 (295)
T ss_pred CCCHHHHHHHHHHhcCCEEEEECCCCCCCCCcccCCCcCCCeEEEeeeeccCc---------------------------
Confidence 467788888899999999999999998766544 445789999998541100
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (295)
T cd07474 187 -------------------------------------------------------------------------------- 186 (295)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeec-cCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSF-SSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~f-SS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 481 (734)
........| |++|++. ...+||||+|||.+|++++...
T Consensus 187 -----------------------------~~~~~~~~~~s~~~~~~--~~~~kpdv~apG~~i~~~~~~~---------- 225 (295)
T cd07474 187 -----------------------------AEADTVGPSSSRGPPTS--DSAIKPDIVAPGVDIMSTAPGS---------- 225 (295)
T ss_pred -----------------------------CCCCceeccCCCCCCCC--CCCcCCCEECCcCceEeeccCC----------
Confidence 001123344 4455555 7889999999999999998762
Q ss_pred CCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc-cCCCCCCCCccCcccc
Q 044427 482 RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE-DLEFAYGSGHINPAQA 551 (734)
Q Consensus 482 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~-~~~~~~G~G~vn~~~A 551 (734)
...|..++|||||||+|||++|||+|++|.|++++||++|++||++....+.. ..+..+|+|+||+.+|
T Consensus 226 -~~~~~~~~GTS~AaP~vaG~aAll~~~~p~l~~~~v~~~L~~tA~~~~~~~~~~~~~~~~G~G~l~~~~A 295 (295)
T cd07474 226 -GTGYARMSGTSMAAPHVAGAAALLKQAHPDWSPAQIKAALMNTAKPLYDSDGVVYPVSRQGAGRVDALRA 295 (295)
T ss_pred -CCceEEeccHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCcccccCCCCcCChhccCcceeccccC
Confidence 26789999999999999999999999999999999999999999998765432 1357899999999986
|
The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=376.22 Aligned_cols=234 Identities=24% Similarity=0.365 Sum_probs=193.0
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|||||||||++||+|.+.. +..+++.. ....|..+|||||||||+|
T Consensus 1 V~VavIDsGvd~~hp~l~~~~-----------------------~~~~~~~~---------~~~~~~~~HGT~vAgiia~ 48 (239)
T cd05561 1 VRVGMIDTGIDTAHPALSAVV-----------------------IARLFFAG---------PGAPAPSAHGTAVASLLAG 48 (239)
T ss_pred CEEEEEeCCCCCCCcccccCc-----------------------cccccCCC---------CCCCCCCCCHHHHHHHHhC
Confidence 789999999999999996431 11111111 1345678999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC----CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG----CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIG 252 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g----~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a 252 (734)
+... . .|+||+|+|+.+|++...+ ++..++++||+||++.|++|||||||... ...++.+
T Consensus 49 ~~~~----------~-~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~-----~~~l~~a 112 (239)
T cd05561 49 AGAQ----------R-PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPP-----NALLAAA 112 (239)
T ss_pred CCCC----------C-cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC-----CHHHHHH
Confidence 8532 1 6999999999999998642 67788999999999999999999999752 3467778
Q ss_pred HHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCC
Q 044427 253 SFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDA 331 (734)
Q Consensus 253 ~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~ 331 (734)
+.++.++|++||+||||+|... ..++...+++|+|++.+.+
T Consensus 113 i~~a~~~gilvv~AaGN~g~~~~~~~Pa~~~~vi~V~a~~~~-------------------------------------- 154 (239)
T cd05561 113 VAAAAARGMVLVAAAGNDGPAAPPLYPAAYPGVIAVTAVDAR-------------------------------------- 154 (239)
T ss_pred HHHHHHCCCEEEEecCCCCCCCCccCcccCCCceEEEeecCC--------------------------------------
Confidence 8889999999999999999753 3455566788888874321
Q ss_pred cccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHH
Q 044427 332 ANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 332 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~ 411 (734)
T Consensus 155 -------------------------------------------------------------------------------- 154 (239)
T cd05561 155 -------------------------------------------------------------------------------- 154 (239)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEecc
Q 044427 412 YIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491 (734)
Q Consensus 412 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 491 (734)
+.++.||++|+.. ||.|||.+|+++.+. +.|..++|
T Consensus 155 -----------------------~~~~~~s~~g~~~--------di~ApG~~i~~~~~~-------------~~~~~~sG 190 (239)
T cd05561 155 -----------------------GRLYREANRGAHV--------DFAAPGVDVWVAAPG-------------GGYRYVSG 190 (239)
T ss_pred -----------------------CCccccCCCCCcc--------eEEccccceecccCC-------------CCEEEeCC
Confidence 2567899999876 999999999998765 67999999
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCC
Q 044427 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSG 544 (734)
Q Consensus 492 TSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G 544 (734)
||||||||||++|||+|++| |++++||++|++||++++..+. +..||||
T Consensus 191 TS~AaP~vaG~aAll~~~~p-~~~~~i~~~L~~ta~~~g~~~~---d~~~G~G 239 (239)
T cd05561 191 TSFAAPFVTAALALLLQASP-LAPDDARARLAATAKDLGPPGR---DPVFGYG 239 (239)
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHhhccCCCCc---CCCcCCC
Confidence 99999999999999999999 9999999999999998877655 7899998
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=383.67 Aligned_cols=258 Identities=25% Similarity=0.316 Sum_probs=186.8
Q ss_pred CCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc--CCc--ccCce--eEeeeecCCCCc----------------c
Q 044427 95 GSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG--ANF--TCNNK--IIGARYYNSENI----------------Y 152 (734)
Q Consensus 95 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~--~~f--~~n~k--i~g~~~~~~~~~----------------~ 152 (734)
|+|+|||||||||++||+|++. .|....+. .+. +.|.. -+.+++|..... .
T Consensus 1 ~~V~VaviDtGid~~Hpdl~~~-------~~~n~~e~~~~~~d~d~ng~~dd~~g~~f~~~~~~~~~~~~~~~~~~~~~~ 73 (291)
T cd07483 1 KTVIVAVLDSGVDIDHEDLKGK-------LWINKKEIPGNGIDDDNNGYIDDVNGWNFLGQYDPRRIVGDDPYDLTEKGY 73 (291)
T ss_pred CceEEEEEeCCCCCCChhhhhh-------hhcCCcccCCCCccCCCCCccccccCeeccCCcccccccccCccccccccc
Confidence 6899999999999999999853 22111110 000 00000 123333332110 0
Q ss_pred ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEE
Q 044427 153 EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDII 232 (734)
Q Consensus 153 ~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVI 232 (734)
...+...+.+..+|||||||||++...++ .| +.||||+|+|+.+|++........++++||+||++.|++||
T Consensus 74 g~~~~~~~~~~~gHGT~VAGiIaa~~~n~---~g-----~~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~Ii 145 (291)
T cd07483 74 GNNDVNGPISDADHGTHVAGIIAAVRDNG---IG-----IDGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVI 145 (291)
T ss_pred cccccCCCCCCCCcHHHHHHHHhCcCCCC---Cc-----eEEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEE
Confidence 01122345578999999999999986432 12 38999999999999987555677889999999999999999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCc---C--------CCCCceEEecccccCceeEEEEE
Q 044427 233 SVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV---S--------NFAPWTLTVAASSIDRKFVAQAV 301 (734)
Q Consensus 233 NlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~---~--------~~ap~vitVga~~~~~~~~~~~~ 301 (734)
|||||... ......+..++.++.++|+++|+||||+|...... + ...+++|+||+....
T Consensus 146 N~S~G~~~--~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~p~~~~~~~~~~~~~vi~Vga~~~~-------- 215 (291)
T cd07483 146 NMSFGKSF--SPNKEWVDDAIKYAESKGVLIVHAAGNDGLDLDITPNFPNDYDKNGGEPANNFITVGASSKK-------- 215 (291)
T ss_pred EeCCCCCC--CCccHHHHHHHHHHHhCCeEEEEeCCCCCCCCCcCcCCCCcccccCccccCCeeEEeecccc--------
Confidence 99999763 22234567777888999999999999998643211 1 112445555543211
Q ss_pred eCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEE
Q 044427 302 LGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTI 381 (734)
Q Consensus 302 ~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i 381 (734)
T Consensus 216 -------------------------------------------------------------------------------- 215 (291)
T cd07483 216 -------------------------------------------------------------------------------- 215 (291)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecC
Q 044427 382 MADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPG 461 (734)
Q Consensus 382 ~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG 461 (734)
.....++.||++|+. +|||.|||
T Consensus 216 --------------------------------------------------~~~~~~~~~Sn~G~~-------~vdi~APG 238 (291)
T cd07483 216 --------------------------------------------------YENNLVANFSNYGKK-------NVDVFAPG 238 (291)
T ss_pred --------------------------------------------------CCcccccccCCCCCC-------ceEEEeCC
Confidence 001247889999974 46999999
Q ss_pred CCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 462 VDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 462 ~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
.+|+++.+. +.|..++|||||||||||++|||+|++|.|++.|||++|++||.
T Consensus 239 ~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAl~~s~~p~lt~~~v~~~L~~ta~ 291 (291)
T cd07483 239 ERIYSTTPD-------------NEYETDSGTSMAAPVVSGVAALIWSYYPNLTAKEVKQIILESGV 291 (291)
T ss_pred CCeEeccCc-------------CCeEeeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCC
Confidence 999999776 67999999999999999999999999999999999999999984
|
Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat |
| >cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=385.51 Aligned_cols=220 Identities=27% Similarity=0.320 Sum_probs=166.8
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIADGVDIISVSLG 237 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~~g~dVINlSlG 237 (734)
.|+.+|||||||||||+..++ ..+.||||+|+|+.+|+++... ++..++++||++|++.|++|||||||
T Consensus 182 ~d~~gHGThVAGIIAg~~~~~--------~~~~GVAP~A~I~svkv~d~~~gs~~t~~~l~~ai~~ai~~gadVIN~SlG 253 (412)
T cd04857 182 TDSGAHGTHVAGIAAAHFPEE--------PERNGVAPGAQIVSIKIGDTRLGSMETGTALVRAMIAAIETKCDLINMSYG 253 (412)
T ss_pred CCCCCCHHHHHHHHhCCCCCC--------CceEEecCCCeEEEEEeccCCCCCccchHHHHHHHHHHHHcCCCEEEecCC
Confidence 467899999999999985332 2248999999999999987532 23457999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHH-HHhCCcEEEEcCCCCCCCCCCcCC---CCCceEEecccccCceeEEEEEeCCCeEeeeeec
Q 044427 238 SDFPFEYFEDPIAIGSFH-AMKYGILTSNSAGNSGPDPYSVSN---FAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSI 313 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~~~---~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (734)
.....+.. ..+..++.+ +.++|+++|+||||+|+...++.. ..+++|+|||......+...
T Consensus 254 ~~~~~~~~-~~~~~~~~~~~~~~GVlvVaAAGN~G~~~~tv~~P~~~~~~VIsVGA~~~~~~~~~~-------------- 318 (412)
T cd04857 254 EATHWPNS-GRIIELMNEAVNKHGVIFVSSAGNNGPALSTVGAPGGTTSSVIGVGAYVSPEMMAAE-------------- 318 (412)
T ss_pred cCCCCccc-hHHHHHHHHHHHhCCCEEEEECCCCCCCccccCCccccCCCeEEEcceeccCccccc--------------
Confidence 87422222 223334443 457899999999999987766554 35799999996432100000
Q ss_pred ccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccC
Q 044427 314 NSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFS 393 (734)
Q Consensus 314 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 393 (734)
| ..
T Consensus 319 ---------y----------------------~~---------------------------------------------- 321 (412)
T cd04857 319 ---------Y----------------------SL---------------------------------------------- 321 (412)
T ss_pred ---------c----------------------cc----------------------------------------------
Confidence 0 00
Q ss_pred cCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCC
Q 044427 394 YPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAP 473 (734)
Q Consensus 394 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~ 473 (734)
.....+.++.||||||+. ++.+||||+|||+.|.+.-...
T Consensus 322 ------------------------------------~~~~~~~~~~fSSrGP~~--dG~~~pdI~APG~~I~s~p~~~-- 361 (412)
T cd04857 322 ------------------------------------REKLPGNQYTWSSRGPTA--DGALGVSISAPGGAIASVPNWT-- 361 (412)
T ss_pred ------------------------------------ccccCCccccccccCCcc--cCCcCceEEeCCCcEEEcccCC--
Confidence 001134689999999998 9999999999999998752211
Q ss_pred CCCCCCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccc
Q 044427 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 474 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~ 529 (734)
...|..|+|||||||||||++|||++ .+|+|+|.+||++|++||+++
T Consensus 362 ---------~~~~~~~sGTSmAaP~VAG~aALllSa~k~~~~~~tp~~Vk~aL~~TA~~~ 412 (412)
T cd04857 362 ---------LQGSQLMNGTSMSSPNACGGIALLLSGLKAEGIPYTPYSVRRALENTAKKL 412 (412)
T ss_pred ---------CCCeEEecccHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccC
Confidence 15689999999999999999999985 578999999999999999864
|
Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing. |
| >cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-44 Score=375.17 Aligned_cols=244 Identities=32% Similarity=0.359 Sum_probs=196.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||||||++||+|...... .+.++.+.++|.+... ....|..+|||||||||+
T Consensus 1 Gv~VaviDsGi~~~h~~~~~~~~~----------------~~~~i~~~~~~~~~~~------~~~~~~~~HGT~vagiia 58 (261)
T cd07493 1 GITIAVIDAGFPKVHEAFAFKHLF----------------KNLRILGEYDFVDNSN------NTNYTDDDHGTAVLSTMA 58 (261)
T ss_pred CCEEEEEccCCCccCcchhhhccc----------------cCCceeeeecCccCCC------CCCCCCCCchhhhheeee
Confidence 799999999999999999522110 2446777778876531 113678899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC--------
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIADGVDIISVSLGSDFPFEY-------- 244 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~-------- 244 (734)
|+.. +.+.||||+|+|+.+|+..... ....+++.|++||.+.+++|||||||.......
T Consensus 59 ~~~~----------~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~ 128 (261)
T cd07493 59 GYTP----------GVMVGTAPNASYYLARTEDVASETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYAD 128 (261)
T ss_pred eCCC----------CCEEEeCCCCEEEEEEecccCCcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccccc
Confidence 9752 2348999999999999876432 345678899999999999999999998742111
Q ss_pred ---CCCHHHHHHHHHHhCCcEEEEcCCCCCCCC---CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 245 ---FEDPIAIGSFHAMKYGILTSNSAGNSGPDP---YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 245 ---~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~---~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
....+..++.++.++|+++|+||||+|... ...+...+++|+|||...+
T Consensus 129 ~~~~~~~l~~a~~~a~~~gilvv~AAGN~g~~~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 183 (261)
T cd07493 129 MDGKTSFISRAANIAASKGMLVVNSAGNEGSTQWKGIGAPADAENVLSVGAVDAN------------------------- 183 (261)
T ss_pred ccccchHHHHHHHHHHhCCeEEEEECCCCCCCCCCcccCcccCCceEEEEEeccC-------------------------
Confidence 123567788888999999999999999763 3445567888999874321
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 184 -------------------------------------------------------------------------------- 183 (261)
T cd07493 184 -------------------------------------------------------------------------------- 183 (261)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++||+. ++++||||+|||.+|++....
T Consensus 184 ------------------------------------~~~~~~S~~G~~~--~~~~~pdi~a~G~~~~~~~~~-------- 217 (261)
T cd07493 184 ------------------------------------GNKASFSSIGPTA--DGRLKPDVMALGTGIYVINGD-------- 217 (261)
T ss_pred ------------------------------------CCCCccCCcCCCC--CCCcCCceEecCCCeEEEcCC--------
Confidence 2577899999998 899999999999999985543
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 218 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~l~~tA~ 261 (261)
T cd07493 218 -----GNITYANGTSFSCPLIAGLIACLWQAHPNWTNLQIKEAILKSAS 261 (261)
T ss_pred -----CcEEeeCcHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=374.56 Aligned_cols=247 Identities=28% Similarity=0.356 Sum_probs=195.1
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|||||+|||++||+|.+. . +..... .+...+.+.+.. .....+.|..+||||||||
T Consensus 1 G~GV~VaViDsGi~~~hp~l~~~-~-------~~~~~~-------~~~~~~~~~d~~----~~~~~~~d~~~HGT~vagi 61 (264)
T cd07481 1 GTGIVVANIDTGVDWTHPALKNK-Y-------RGWGGG-------SADHDYNWFDPV----GNTPLPYDDNGHGTHTMGT 61 (264)
T ss_pred CCCcEEEEEeCCCCCCChhHhhc-c-------cccCCC-------CcccccccccCC----CCCCCCCCCCCchhhhhhh
Confidence 89999999999999999999754 1 110000 000000111110 1124566788999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh------------CCCcEEEEccCCCCC
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA------------DGVDIISVSLGSDFP 241 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~------------~g~dVINlSlG~~~~ 241 (734)
|+|.... +...||||+|+|+.+|+++..++...+++++++++++ .+++|||||||....
T Consensus 62 i~g~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~ 132 (264)
T cd07481 62 MVGNDGD---------GQQIGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG 132 (264)
T ss_pred eeecCCC---------CCceEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC
Confidence 9987532 1128999999999999998877888899999999975 789999999998832
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC---cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS---VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 242 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
....+..++..+.++|++||+||||++..... .+...+++|+||+.+.+
T Consensus 133 ---~~~~~~~~~~~~~~~gvlvV~aaGN~~~~~~~~~~~pa~~~~vi~Vga~~~~------------------------- 184 (264)
T cd07481 133 ---DNEWLQPAVAAWRAAGIFPVFAAGNDGPRCSTLNAPPANYPESFAVGATDRN------------------------- 184 (264)
T ss_pred ---CchHHHHHHHHHHHCCCEEEEECCCCCCCCCCCcCCCCcCCceEEEEecCCC-------------------------
Confidence 34556667777889999999999999865432 34556788888874322
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 185 -------------------------------------------------------------------------------- 184 (264)
T cd07481 185 -------------------------------------------------------------------------------- 184 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++||.. .+++||||+|||.+|+++.+.
T Consensus 185 ------------------------------------~~~~~~S~~g~~~--~~~~~~dv~ApG~~i~s~~~~-------- 218 (264)
T cd07481 185 ------------------------------------DVLADFSSRGPST--YGRIKPDISAPGVNIRSAVPG-------- 218 (264)
T ss_pred ------------------------------------CCCccccCCCCCC--CCCcCceEEECCCCeEEecCC--------
Confidence 3578899999998 799999999999999999876
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCC--CCHHHHHHHHHhccc
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN--WSPSSIKSALMTTAY 527 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~--ls~~~vk~~L~~TA~ 527 (734)
+.|..++|||||||+|||++|||+|++|. ++++|||++|++||+
T Consensus 219 -----~~~~~~~GTS~AaP~vaG~aAll~~~~p~~~l~~~~v~~~L~~tA~ 264 (264)
T cd07481 219 -----GGYGSSSGTSMAAPHVAGVAALLWSANPSLIGDVDATEAILTETAR 264 (264)
T ss_pred -----CceEeeCcHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhcC
Confidence 67899999999999999999999999999 999999999999985
|
Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. |
| >cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=367.99 Aligned_cols=257 Identities=31% Similarity=0.462 Sum_probs=205.4
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|+|||+|||++||+|.+.... ...+.... .......|..+||||||||
T Consensus 1 G~gv~VaviDsGv~~~h~~l~~~~~~-----------------------~~~~~~~~----~~~~~~~d~~~HGT~vAgi 53 (264)
T cd07487 1 GKGITVAVLDTGIDAPHPDFDGRIIR-----------------------FADFVNTV----NGRTTPYDDNGHGTHVAGI 53 (264)
T ss_pred CCCcEEEEEeCCCCCCCccccccccc-----------------------cccccccc----cCCCCCCCCCCchHHHHHH
Confidence 89999999999999999999754211 01111100 1124566778999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCH
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD----GVDIISVSLGSDFPFEYFEDP 248 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~----g~dVINlSlG~~~~~~~~~~~ 248 (734)
|+|..... .+.+.||||+|+|+.+|+++..+ ....++++||+|+++. +++|||||||.........+.
T Consensus 54 iag~~~~~-------~~~~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~~~~~~~ 126 (264)
T cd07487 54 IAGSGRAS-------NGKYKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDPSYGEDP 126 (264)
T ss_pred HhcCCccc-------CCceEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCCCCCCCH
Confidence 99986431 22349999999999999998876 6778899999999998 999999999998544567788
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCCCCC--CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeE
Q 044427 249 IAIGSFHAMKYGILTSNSAGNSGPDPY--SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLI 326 (734)
Q Consensus 249 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~ 326 (734)
+..++.++.++|++||+||||++.... ..+...+++|+||+.+.+..
T Consensus 127 ~~~~~~~~~~~gilvv~aaGN~~~~~~~~~~p~~~~~vi~Vga~~~~~~------------------------------- 175 (264)
T cd07487 127 LCQAVERLWDAGIVVVVAAGNSGPGPGTITSPGNSPKVITVGAVDDNGP------------------------------- 175 (264)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCCCccCCcccCCCceEEEeccCCCC-------------------------------
Confidence 899999999999999999999998775 44556789999998654310
Q ss_pred EcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccch
Q 044427 327 WGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENG 406 (734)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~ 406 (734)
T Consensus 176 -------------------------------------------------------------------------------- 175 (264)
T cd07487 176 -------------------------------------------------------------------------------- 175 (264)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcce
Q 044427 407 QDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 486 (734)
....++.||++||+. ++++||||+|||.+|++..+... .......+.|
T Consensus 176 --------------------------~~~~~~~~s~~G~~~--~~~~~~di~apG~~i~~~~~~~~----~~~~~~~~~~ 223 (264)
T cd07487 176 --------------------------HDDGISYFSSRGPTG--DGRIKPDVVAPGENIVSCRSPGG----NPGAGVGSGY 223 (264)
T ss_pred --------------------------CCccccccccCCCCC--CCCcCCCEEccccceEecccccc----ccCCCCCCce
Confidence 001478899999998 89999999999999999865421 0011223778
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
..++|||||||+|||++|||+|++|.|++.+||++|++||+
T Consensus 224 ~~~~GTS~Aap~vaG~~All~~~~p~~~~~~ik~~L~~tA~ 264 (264)
T cd07487 224 FEMSGTSMATPHVSGAIALLLQANPILTPDEVKCILRDTAT 264 (264)
T ss_pred EeccccchHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=363.78 Aligned_cols=262 Identities=24% Similarity=0.277 Sum_probs=198.9
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
+|..+++|+||+|+|||||||++||+|.+...... ++. ....+.+.... ........|..+|
T Consensus 2 aw~~g~~G~gv~IaviDtGid~~Hp~~~~~~~~~~---~~~------------~~~~~~~~~~~---~~~~~~~~~~~gH 63 (273)
T cd07485 2 AWEFGTGGPGIIVAVVDTGVDGTHPDLQGNGDGDG---YDP------------AVNGYNFVPNV---GDIDNDVSVGGGH 63 (273)
T ss_pred ccccccCCCCcEEEEEeCCCCCCChhhccCCCCCC---ccc------------ccCCccccccc---CCcCCCCCCCCCC
Confidence 57889999999999999999999999986511100 000 00000010000 0011345567899
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCC
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYF 245 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~ 245 (734)
||||||||+|+........|++ .+.|+||+|+|+.+|++...+ ....+++++|+||++.|++|||||||... ...+
T Consensus 64 GT~VAgiia~~~~~~~~~g~i~--~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~-~~~~ 140 (273)
T cd07485 64 GTHVAGTIAAVNNNGGGVGGIA--GAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTG-GGIY 140 (273)
T ss_pred HHHHHHHHHcccCCCcceeccc--cccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCC-cccc
Confidence 9999999999765432222222 236799999999999998754 67788999999999999999999999873 2334
Q ss_pred CCHHHHHHHHHHhC-------CcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 246 EDPIAIGSFHAMKY-------GILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 246 ~~~~~~a~~~a~~~-------Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
...+..++..+.++ |++||+||||+|......+...+++|+|++.+.+
T Consensus 141 ~~~~~~a~~~~~~~~~~~~~~g~lvv~AaGN~g~~~~~~pa~~~~vi~V~a~~~~------------------------- 195 (273)
T cd07485 141 SPLLKDAFDYFIENAGGSPLDGGIVVFSAGNSYTDEHRFPAAYPGVIAVAALDTN------------------------- 195 (273)
T ss_pred CHHHHHHHHHHHHhcccccCCCeEEEEecCCCCCCCCCCcccCCCeEEEEeccCC-------------------------
Confidence 55677777788877 9999999999998776666777889999885422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 196 -------------------------------------------------------------------------------- 195 (273)
T cd07485 196 -------------------------------------------------------------------------------- 195 (273)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCC-CEeeccCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGV-DILASWSPVAPPSLD 477 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~-~I~sa~~~~~~~~~~ 477 (734)
+.++.||++|+.. ||.|||. .|+++.+....
T Consensus 196 ------------------------------------~~~~~~S~~g~~~--------~i~apG~~~i~~~~~~~~~---- 227 (273)
T cd07485 196 ------------------------------------DNKASFSNYGRWV--------DIAAPGVGTILSTVPKLDG---- 227 (273)
T ss_pred ------------------------------------CCcCccccCCCce--------EEEeCCCCccccccccccC----
Confidence 2567899999876 9999999 88888765211
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHhhCCC-CCHHHHHHHHHhc
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN-WSPSSIKSALMTT 525 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~-ls~~~vk~~L~~T 525 (734)
.....|..++|||||||+|||++|||+|++|. |+++|||++|++|
T Consensus 228 ---~~~~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~~~~i~~~L~~T 273 (273)
T cd07485 228 ---DGGGNYEYLSGTSMAAPHVSGVAALVLSKFPDVFTPEQIRKLLEES 273 (273)
T ss_pred ---CCCCCeEeeccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhC
Confidence 11367899999999999999999999999999 9999999999986
|
Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev |
| >cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=369.66 Aligned_cols=264 Identities=25% Similarity=0.236 Sum_probs=187.4
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
.+|||||||||.+||+|.+.- .....+.... ....|..||||||||||++
T Consensus 1 p~VaviDtGi~~~hp~l~~~~-----------------------~~~~~~~~~~-------~~~~d~~gHGT~vAgiia~ 50 (291)
T cd04847 1 PIVCVLDSGINRGHPLLAPAL-----------------------AEDDLDSDEP-------GWTADDLGHGTAVAGLALY 50 (291)
T ss_pred CEEEEecCCCCCCChhhhhhh-----------------------ccccccccCC-------CCcCCCCCChHHHHHHHHc
Confidence 379999999999999997431 1111121110 1156899999999999997
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-----CCHHHHHHHHHHHHhCC---CcEEEEccCCCCCCCCCC-C
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-----CATADILAAFDDAIADG---VDIISVSLGSDFPFEYFE-D 247 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-----~~~~~i~~ai~~ai~~g---~dVINlSlG~~~~~~~~~-~ 247 (734)
....+ ....|+||+|+|+.+|++...+ .+..++++||+|+++.+ ++|||||||......... .
T Consensus 51 ~~~~~--------~~~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~~~~~~~~ 122 (291)
T cd04847 51 GDLTL--------PGNGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLPIDDGRPS 122 (291)
T ss_pred CcccC--------CCCCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCCccCCCCC
Confidence 65321 1238999999999999999864 46678999999999853 499999999984322222 2
Q ss_pred HHHHHHHH-HHhCCcEEEEcCCCCCCCCCCc------------CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecc
Q 044427 248 PIAIGSFH-AMKYGILTSNSAGNSGPDPYSV------------SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSIN 314 (734)
Q Consensus 248 ~~~~a~~~-a~~~Gi~vV~AAGN~G~~~~~~------------~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 314 (734)
.+..++.+ +.++|++||+||||+|...... +..++++|+|||.+........
T Consensus 123 ~~~~~id~~a~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~i~~Pa~~~~vItVgA~~~~~~~~~~--------------- 187 (291)
T cd04847 123 SWAAALDQLAAEYDVLFVVSAGNLGDDDAADGPPRIQDDEIEDPADSVNALTVGAITSDDDITDR--------------- 187 (291)
T ss_pred cHHHHHHHHhccCCeEEEEECCCCCccccccccccccccccCCHHHhhhheeeeeeecCccCCCc---------------
Confidence 45555543 5689999999999999775432 2346799999997654210000
Q ss_pred cCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCc
Q 044427 315 SFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSY 394 (734)
Q Consensus 315 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 394 (734)
...+.
T Consensus 188 -----------s~~~~---------------------------------------------------------------- 192 (291)
T cd04847 188 -----------ARYSA---------------------------------------------------------------- 192 (291)
T ss_pred -----------ccccc----------------------------------------------------------------
Confidence 00000
Q ss_pred CcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCC
Q 044427 395 PLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPP 474 (734)
Q Consensus 395 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 474 (734)
......+.||||||.. ++.+||||+|||++|.+........
T Consensus 193 -------------------------------------~~~~~~~~fs~~Gp~~--~~~~KPDl~apG~~i~~~~~~~~~~ 233 (291)
T cd04847 193 -------------------------------------VGPAPAGATTSSGPGS--PGPIKPDVVAFGGNLAYDPSGNAAD 233 (291)
T ss_pred -------------------------------------cccccCCCccccCCCC--CCCcCCcEEeeCCceeecCCCCCcc
Confidence 0001233499999998 9999999999999998865421100
Q ss_pred -----CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 475 -----SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 475 -----~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
...........|..++|||||||||||++|||+|++|++++++||++|++||+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~GTS~AaP~Vag~aAll~~~~p~~t~~~ikalL~~sA~ 291 (291)
T cd04847 234 GDLSLLTTLSSPSGGGFVTVGGTSFAAPLAARLAAGLFAELPELSPETIRALLIHSAE 291 (291)
T ss_pred CcceeeecccCCCCCcccccccchHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 00001122478999999999999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=356.58 Aligned_cols=253 Identities=31% Similarity=0.415 Sum_probs=188.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||+|||++||+|.+.- ....+|..+. ........|..+|||||||||+
T Consensus 1 GV~VaviDsGv~~~hp~l~~~~-----------------------~~~~~~~~~~---~~~~~~~~d~~~HGT~vAgiia 54 (254)
T cd07490 1 GVTVAVLDTGVDADHPDLAGRV-----------------------AQWADFDENR---RISATEVFDAGGHGTHVSGTIG 54 (254)
T ss_pred CCEEEEEeCCCCCCCcchhccc-----------------------CCceeccCCC---CCCCCCCCCCCCcHHHHHHHHh
Confidence 7999999999999999997431 1122232211 0112345578899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFH 255 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~ 255 (734)
|+..+ +.+.||||+|+|+.+|++...++...+++++|+|+++.+++|||||||..... .+.+..++..
T Consensus 55 ~~~~~---------~~~~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~ 122 (254)
T cd07490 55 GGGAK---------GVYIGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEA 122 (254)
T ss_pred cCCCC---------CCEEEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHH
Confidence 98642 23489999999999999988778889999999999999999999999988322 5666666655
Q ss_pred HHh-CCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 256 AMK-YGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 256 a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
+.+ +|++||+||||+|......+...+++|+||+++.+..... +..
T Consensus 123 ~~~~~g~lvV~aAGN~g~~~~~~pa~~~~vi~Vga~~~~~~~~~----------------------------~s~----- 169 (254)
T cd07490 123 LSNQTGALFVVSAGNEGHGTSGSPGSAYAALSVGAVDRDDEDAW----------------------------FSS----- 169 (254)
T ss_pred HHHcCCCEEEEeCCCCCCCCCCCCccCCceeEEecccccCCccC----------------------------ccC-----
Confidence 554 6999999999999886667777899999999764311000 000
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
+
T Consensus 170 -----------~-------------------------------------------------------------------- 170 (254)
T cd07490 170 -----------F-------------------------------------------------------------------- 170 (254)
T ss_pred -----------C--------------------------------------------------------------------
Confidence 0
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
.......++++|.. .....||||.|||.+|+++.... ...+.|..++||||
T Consensus 171 -------------------g~~~~~~~~~~~~~-~~~~~~~d~~apG~~i~~~~~~~---------~~~~~~~~~~GTS~ 221 (254)
T cd07490 171 -------------------GSSGASLVSAPDSP-PDEYTKPDVAAPGVDVYSARQGA---------NGDGQYTRLSGTSM 221 (254)
T ss_pred -------------------cccccccccCCCCC-ccCCcCceEEeccCCeEccccCC---------CCCCCeeecccHHH
Confidence 00111222333332 25568999999999999965221 11377999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|||+|||++|||+|++|+|++++||++|++||+
T Consensus 222 AaP~vaG~aAl~~~~~p~~~~~~i~~~L~~tA~ 254 (254)
T cd07490 222 AAPHVAGVAALLAAAHPDLSPEQIKDALTETAY 254 (254)
T ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-42 Score=358.42 Aligned_cols=246 Identities=29% Similarity=0.377 Sum_probs=204.5
Q ss_pred ccccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC
Q 044427 79 WDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH 158 (734)
Q Consensus 79 ~~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~ 158 (734)
+..+++...|..+ +|+||+|+|||+|||++||+|... ++...+++.+.. .
T Consensus 13 ~~~~~~~~~~~~~-~G~gv~I~viDsGi~~~h~~l~~~----------------------~~~~~~~~~~~~-------~ 62 (260)
T cd07484 13 LDQIGAPKAWDIT-GGSGVTVAVVDTGVDPTHPDLLKV----------------------KFVLGYDFVDND-------S 62 (260)
T ss_pred ccccChHHHHhhc-CCCCCEEEEEeCCCCCCCcccccC----------------------CcccceeccCCC-------C
Confidence 3446666678666 999999999999999999998422 233334444332 3
Q ss_pred CCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044427 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLG 237 (734)
Q Consensus 159 ~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG 237 (734)
.+.|..+|||||||||++..... ..+.|+||+|+|+.+|+++..+ +...+++++|+++++.+++|||||||
T Consensus 63 ~~~d~~~HGT~vagii~~~~~~~--------~~~~Giap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iin~S~g 134 (260)
T cd07484 63 DAMDDNGHGTHVAGIIAAATNNG--------TGVAGVAPKAKIMPVKVLDANGSGSLADIANGIRYAADKGAKVINLSLG 134 (260)
T ss_pred CCCCCCCcHHHHHHHHhCccCCC--------CceEeECCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCeEEEecCC
Confidence 35678899999999999875332 1238999999999999998765 67888999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 238 SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
... ....+..++..+.++|++||+||||+|.....++...+++|+||+.+.+
T Consensus 135 ~~~----~~~~~~~~~~~a~~~gilvV~aaGN~g~~~~~~pa~~~~vi~Vga~~~~------------------------ 186 (260)
T cd07484 135 GGL----GSTALQEAINYAWNKGVVVVAAAGNEGVSSVSYPAAYPGAIAVAATDQD------------------------ 186 (260)
T ss_pred CCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCCCCCCCeEEEEeeCCC------------------------
Confidence 873 4456777778888999999999999998877788888999999885422
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (260)
T cd07484 187 -------------------------------------------------------------------------------- 186 (260)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
+..+.||++|+.. |++|||.+|++....
T Consensus 187 -------------------------------------~~~~~~s~~g~~~--------~~~apG~~i~~~~~~------- 214 (260)
T cd07484 187 -------------------------------------DKRASFSNYGKWV--------DVSAPGGGILSTTPD------- 214 (260)
T ss_pred -------------------------------------CCcCCcCCCCCCc--------eEEeCCCCcEeecCC-------
Confidence 2567889999876 999999999998765
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~ 529 (734)
+.|..++|||||||+|||++||++|++| |++++||++|++||+++
T Consensus 215 ------~~~~~~~GTS~Aap~vag~~Al~~~~~p-~t~~~i~~~L~~tA~~~ 259 (260)
T cd07484 215 ------GDYAYMSGTSMATPHVAGVAALLYSQGP-LSASEVRDALKKTADDI 259 (260)
T ss_pred ------CCEEEeeeHHHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHhCccC
Confidence 6799999999999999999999999999 99999999999999876
|
Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid |
| >cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=355.82 Aligned_cols=232 Identities=31% Similarity=0.438 Sum_probs=194.6
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
.+..+++|+||+|||||+||+++||+|.+. +...+++... ....|..+|
T Consensus 17 ~~~~~~~G~gv~VaViDsGi~~~h~~~~~~-----------------------~~~~~~~~~~--------~~~~d~~~H 65 (255)
T cd04077 17 YYYDSSTGSGVDVYVLDTGIRTTHVEFGGR-----------------------AIWGADFVGG--------DPDSDCNGH 65 (255)
T ss_pred eEecCCCCCCcEEEEEcCCCCCCChhhhCC-----------------------eeeeeecCCC--------CCCCCCCcc
Confidence 346789999999999999999999999643 2233344332 125678899
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC-----CCcEEEEccCCCC
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD-----GVDIISVSLGSDF 240 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-----g~dVINlSlG~~~ 240 (734)
||||||||+++. .||||+|+|+.+|+++..+ ...++++++|+++++. +++|||||||...
T Consensus 66 GT~vAgiia~~~--------------~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~ 131 (255)
T cd04077 66 GTHVAGTVGGKT--------------YGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA 131 (255)
T ss_pred HHHHHHHHHccc--------------cCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC
Confidence 999999999863 7999999999999998875 6778899999999987 4899999999872
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLN 319 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (734)
...+..++.++.++|+++|+||||+|... ...+...+++|+||+.+.+
T Consensus 132 -----~~~~~~~~~~~~~~g~liV~aaGN~g~~~~~~~pa~~~~vi~Vga~~~~-------------------------- 180 (255)
T cd04077 132 -----STALDAAVAAAVNAGVVVVVAAGNSNQDACNYSPASAPEAITVGATDSD-------------------------- 180 (255)
T ss_pred -----CHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCcCccCCCceEEEeccCCC--------------------------
Confidence 45677788889999999999999999765 3445567899999885432
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceE
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 399 (734)
T Consensus 181 -------------------------------------------------------------------------------- 180 (255)
T cd04077 181 -------------------------------------------------------------------------------- 180 (255)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCC
Q 044427 400 LISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479 (734)
Q Consensus 400 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 479 (734)
+.++.||++||.. ||+|||.+|+++....
T Consensus 181 -----------------------------------~~~~~~S~~g~~~--------~i~apG~~i~~~~~~~-------- 209 (255)
T cd04077 181 -----------------------------------DARASFSNYGSCV--------DIFAPGVDILSAWIGS-------- 209 (255)
T ss_pred -----------------------------------CCccCcccCCCCC--------cEEeCCCCeEecccCC--------
Confidence 2467899999986 9999999999987742
Q ss_pred CCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhcccc
Q 044427 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYV 528 (734)
Q Consensus 480 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~ 528 (734)
...|..++|||||||+|||++|||+|++|.+++++||++|++||++
T Consensus 210 ---~~~~~~~~GTS~Aap~vaG~~All~~~~p~~~~~~v~~~L~~tA~~ 255 (255)
T cd04077 210 ---DTATATLSGTSMAAPHVAGLAAYLLSLGPDLSPAEVKARLLNLATK 255 (255)
T ss_pred ---CCcEEeeCcHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhccC
Confidence 2689999999999999999999999999999999999999999974
|
The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti |
| >cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10 | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=361.55 Aligned_cols=258 Identities=24% Similarity=0.291 Sum_probs=186.3
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
+.+++...|..+++|+||+|||||||||..|| |...++. + + ..+..+ ....
T Consensus 6 ~~l~~~~~~~~G~~G~Gv~VaViDTGv~~~h~-~~~~~~~-------~-----------~----~~~~~~------~~~~ 56 (298)
T cd07494 6 ALLNATRVHQRGITGRGVRVAMVDTGFYAHPF-FESRGYQ-------V-----------R----VVLAPG------ATDP 56 (298)
T ss_pred hhcChhHHHhcCCCCCCcEEEEEeCCCcCCch-hhcCCcc-------c-----------e----eecCCC------CCCC
Confidence 34566667889999999999999999999998 7533211 0 0 011111 1134
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
..|+.|||||||+++ .||||+|+|+.+|+++. ...++++||+||++++++|||||||..
T Consensus 57 ~~D~~gHGT~vag~i------------------~GvAP~a~i~~vkv~~~---~~~~~~~ai~~a~~~g~dVIn~SlG~~ 115 (298)
T cd07494 57 ACDENGHGTGESANL------------------FAIAPGAQFIGVKLGGP---DLVNSVGAFKKAISLSPDIISNSWGYD 115 (298)
T ss_pred CCCCCCcchheeece------------------eEeCCCCeEEEEEccCC---CcHHHHHHHHHHHhcCCCEEEeecccC
Confidence 567889999999865 68999999999999864 566789999999999999999999986
Q ss_pred CCCCC---------CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeee
Q 044427 240 FPFEY---------FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPG 310 (734)
Q Consensus 240 ~~~~~---------~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (734)
..... ....++.++.+|.++|++||+||||++. .++...|++|+||+++.+.. +...
T Consensus 116 ~~~~~~~~~~~~~~~~~al~~ai~~A~~~Gi~vVaAAGN~~~---~~Pa~~p~viaVga~~~~~~---------g~~~-- 181 (298)
T cd07494 116 LRSPGTSWSRSLPNALKALAATLQDAVARGIVVVFSAGNGGW---SFPAQHPEVIAAGGVFVDED---------GARR-- 181 (298)
T ss_pred CCCcccccccccchhhHHHHHHHHHHHHCCcEEEEeCCCCCC---CcCCCCCCEEEEEeEeccCC---------Cccc--
Confidence 32111 1234777888889999999999999874 46778899999999754310 0000
Q ss_pred eecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCc
Q 044427 311 LSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 311 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
T Consensus 182 -------------------------------------------------------------------------------- 181 (298)
T cd07494 182 -------------------------------------------------------------------------------- 181 (298)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcE-------------
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDI------------- 457 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI------------- 457 (734)
.....+.|+|. . .+++.|||+
T Consensus 182 ------------------------------------------~~~~~~~~~s~--~--~~g~~~pd~~~~~g~~~~~~~~ 215 (298)
T cd07494 182 ------------------------------------------ASSYASGFRSK--I--YPGRQVPDVCGLVGMLPHAAYL 215 (298)
T ss_pred ------------------------------------------ccccccCcccc--c--CCCCccCccccccCcCCccccc
Confidence 00001112111 1 145667776
Q ss_pred ---EecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 458 ---TAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 458 ---~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
+|||..|.+...... ........|..++|||||||||||++|||+|++|.|++++||.+|++||+++...
T Consensus 216 ~~~~APG~~i~~~~~~~~-----~~~~~~~~y~~~sGTS~Aap~vaG~aAll~~~~p~~~~~~v~~~l~~ta~~~~~~ 288 (298)
T cd07494 216 MLPVPPGSQLDRSCAAFP-----DGTPPNDGWGVFSGTSAAAPQVAGVCALMLQANPGLSPERARSLLNKTARDVTKG 288 (298)
T ss_pred ccccCCCcceeccccCCC-----CCCCCCCCeEeeccchHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCC
Confidence 479999876543210 0011136799999999999999999999999999999999999999999987654
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=358.42 Aligned_cols=266 Identities=24% Similarity=0.291 Sum_probs=190.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcccC---ceeEeeeecCCCC--ccccCCCCCCCCCCCChHH
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFTCN---NKIIGARYYNSEN--IYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~~n---~ki~g~~~~~~~~--~~~~~~~~~~~D~~gHGTh 169 (734)
||+|||||||||++||+|.+.... .|+-.... .....+ .+.....++.+.. ...........+..+||||
T Consensus 1 gV~VaviDtGi~~~Hp~l~~~~~~----g~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~HGT~ 76 (285)
T cd07496 1 GVVVAVLDTGVLFHHPDLAGVLLP----GYDFISDPAIANDGDGRDSDPTDPGDWVTGDDVPPGGFCGSGVSPSSWHGTH 76 (285)
T ss_pred CCEEEEecCCCCCCCcchhhcccc----CcccccCcccccCCCCCCCCCCCcccccccccccccccccCCCCCCCCCHHH
Confidence 799999999999999999854311 11100000 000000 0000000000000 0000112334567899999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH----------hCCCcEEEEccCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAI----------ADGVDIISVSLGSD 239 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai----------~~g~dVINlSlG~~ 239 (734)
|||||+|...++ .| +.||||+|+|+.+|+++..+.+..++++|++|++ .++++|||||||..
T Consensus 77 vAgiiaa~~~~~---~~-----~~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~ 148 (285)
T cd07496 77 VAGTIAAVTNNG---VG-----VAGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGD 148 (285)
T ss_pred HHHHHhCcCCCC---CC-----ceeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCC
Confidence 999999986532 22 2899999999999999887778899999999998 45789999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
.. ....+..++..+.++|++||+||||+|... ...+...+++|+||+++.+
T Consensus 149 ~~---~~~~~~~ai~~a~~~GvivV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------- 200 (285)
T cd07496 149 GA---CSATMQNAINDVRARGVLVVVAAGNEGSSASVDAPANCRGVIAVGATDLR------------------------- 200 (285)
T ss_pred CC---CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCccCCCCCCceEEEeccCCC-------------------------
Confidence 32 145677888889999999999999999875 4556677899999885422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 201 -------------------------------------------------------------------------------- 200 (285)
T cd07496 201 -------------------------------------------------------------------------------- 200 (285)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCC--C
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS--L 476 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~--~ 476 (734)
+.++.||++|+.. ||.|||++|.+......... .
T Consensus 201 ------------------------------------~~~~~~S~~g~~v--------di~apG~~i~~~~~~~~~~~~~~ 236 (285)
T cd07496 201 ------------------------------------GQRASYSNYGPAV--------DVSAPGGDCASDVNGDGYPDSNT 236 (285)
T ss_pred ------------------------------------CCcccccCCCCCC--------CEEeCCCCccccCCCCccccccc
Confidence 2578899999986 99999999998876532110 0
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
.........|..++|||||||+|||++|||+|++|+|++++||++|++|
T Consensus 237 ~~~~~~~~~~~~~sGTS~AaP~vaG~aAlv~~~~p~lt~~~v~~~L~~t 285 (285)
T cd07496 237 GTTSPGGSTYGFLQGTSMAAPHVAGVAALMKSVNPSLTPAQIESLLQST 285 (285)
T ss_pred cccCCCCCceEeeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 0111223678999999999999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=348.84 Aligned_cols=240 Identities=28% Similarity=0.356 Sum_probs=190.4
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|||||+|||++||+|.+.. ++...+++.... ....|..+|||||||||+|
T Consensus 1 V~VaviDsGi~~~hp~l~~~~---------------------~~~~~~~~~~~~-------~~~~~~~~HGT~vAgiiag 52 (242)
T cd07498 1 VVVAIIDTGVDLNHPDLSGKP---------------------KLVPGWNFVSNN-------DPTSDIDGHGTACAGVAAA 52 (242)
T ss_pred CEEEEecCCCCCCChhhccCc---------------------CccCCccccCCC-------CCCCCCCCCHHHHHHHHHh
Confidence 789999999999999997520 111111222111 2456788999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFH 255 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~ 255 (734)
+..+. ..+.||||+|+|+.+|++...+ +...++.++|+|+++.+++|||||||...........+..++.+
T Consensus 53 ~~~~~--------~~~~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~ 124 (242)
T cd07498 53 VGNNG--------LGVAGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTESISSAIDNAATY 124 (242)
T ss_pred ccCCC--------ceeEeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCchHHHHHHHHHHH
Confidence 86422 1248999999999999998764 67888999999999999999999999875444445667777778
Q ss_pred HHh-CCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 256 AMK-YGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 256 a~~-~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
+.. +|+++|+||||+|......+...+++|+||+.+..
T Consensus 125 ~~~~~gvliv~aaGN~g~~~~~~pa~~~~vi~Vga~~~~----------------------------------------- 163 (242)
T cd07498 125 GRNGKGGVVLFAAGNSGRSVSSGYAANPSVIAVAATDSN----------------------------------------- 163 (242)
T ss_pred HhhcCCeEEEEecCCCCCccCCCCcCCCCeEEEEEeCCC-----------------------------------------
Confidence 888 99999999999998776667778999999985422
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (242)
T cd07498 164 -------------------------------------------------------------------------------- 163 (242)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
+.++.||++||.. |+.|||.++......... ..+...+.|..++||||
T Consensus 164 --------------------~~~~~~s~~g~~~--------~~~apG~~~~~~~~~~~~----~~~~~~~~~~~~~GTS~ 211 (242)
T cd07498 164 --------------------DARASYSNYGNYV--------DLVAPGVGIWTTGTGRGS----AGDYPGGGYGSFSGTSF 211 (242)
T ss_pred --------------------CCccCcCCCCCCe--------EEEeCcCCcccCCccccc----cccCCCCceEeeCcHHH
Confidence 2567899999986 999999999887543210 11122367899999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
|||+|||++|||+|++|+|++++||++|++|
T Consensus 212 Aap~vaG~~All~~~~p~l~~~~i~~~L~~t 242 (242)
T cd07498 212 ASPVAAGVAALILSANPNLTPAEVEDILTST 242 (242)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 9999999999999999999999999999976
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=358.65 Aligned_cols=277 Identities=29% Similarity=0.322 Sum_probs=201.4
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 90 SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 90 ~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
.+++|+||+|||||+|||++||+|.+.... + ..+ .++++.....+.+ ...|..+||||
T Consensus 2 ~g~tG~gv~VaviDtGi~~~hp~l~~~~~~-----~------~~~-~~~~~~~~~~~~~----------~~~d~~~HGT~ 59 (293)
T cd04842 2 LGLTGKGQIVGVADTGLDTNHCFFYDPNFN-----K------TNL-FHRKIVRYDSLSD----------TKDDVDGHGTH 59 (293)
T ss_pred CCcCCcCCEEEEEecCCCCCCCcccCCCcC-----c------Ccc-CcccEEEeeccCC----------CCCCCCCCcch
Confidence 589999999999999999999999754220 0 000 2334443333322 12278999999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~ 247 (734)
|||||+|+...... ...+.||||+|+|+.+|+++..+ ....++..+++++.+.+++|||||||..... ...
T Consensus 60 vAgiia~~~~~~~~-----~~~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~~--~~~ 132 (293)
T cd04842 60 VAGIIAGKGNDSSS-----ISLYKGVAPKAKLYFQDIGDTSGNLSSPPDLNKLFSPMYDAGARISSNSWGSPVNN--GYT 132 (293)
T ss_pred hheeeccCCcCCCc-----ccccccccccCeEEEEEeeccCccccCCccHHHHHHHHHHhCCEEEeccCCCCCcc--ccc
Confidence 99999998754321 11349999999999999988765 5566788999999999999999999988421 123
Q ss_pred HHHHHHHHHH-h-CCcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 248 PIAIGSFHAM-K-YGILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 248 ~~~~a~~~a~-~-~Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
....++.++. + +|++||+||||+|.... ..+...+++|+|||++......
T Consensus 133 ~~~~~~~~~~~~~~g~lvV~aAGN~g~~~~~~~~~pa~~~~vi~Vga~~~~~~~~------------------------- 187 (293)
T cd04842 133 LLARAYDQFAYNNPDILFVFSAGNDGNDGSNTIGSPATAKNVLTVGASNNPSVSN------------------------- 187 (293)
T ss_pred hHHHHHHHHHHhCCCeEEEEeCCCCCCCCCccccCcccccceEEEeeccCCCccc-------------------------
Confidence 3344444433 3 89999999999997764 4556679999999976542100
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
...|..
T Consensus 188 --------------------~~~~~~------------------------------------------------------ 193 (293)
T cd04842 188 --------------------GEGGLG------------------------------------------------------ 193 (293)
T ss_pred --------------------cccccc------------------------------------------------------
Confidence 000000
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTR 482 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 482 (734)
.......++.||++||+. ++++||||+|||++|+++.... .......
T Consensus 194 ---------------------------~~~~~~~~~~~S~~G~~~--~~~~~pdv~ApG~~i~~~~~~~----~~~~~~~ 240 (293)
T cd04842 194 ---------------------------QSDNSDTVASFSSRGPTY--DGRIKPDLVAPGTGILSARSGG----GGIGDTS 240 (293)
T ss_pred ---------------------------ccCCCCccccccCcCCCC--CCCcCCCEECCCCCeEeccCCC----CCCCCCC
Confidence 001224689999999998 8999999999999999997542 0011122
Q ss_pred CcceEEeccccchhhHHHHHHHHHHhhC-----C---CCCHHHHHHHHHhccc
Q 044427 483 SVSFNIISGTSMSCPHASGSAAYVKAAH-----P---NWSPSSIKSALMTTAY 527 (734)
Q Consensus 483 ~~~y~~~sGTSmAaP~VAG~aALl~q~~-----P---~ls~~~vk~~L~~TA~ 527 (734)
...|..++|||||||+|||++|||+|++ | .+++.+||++|++||+
T Consensus 241 ~~~~~~~~GTS~AaP~VaG~aAll~~~~~~~~~~~~~~~~~~~~ka~l~~sA~ 293 (293)
T cd04842 241 DSAYTSKSGTSMATPLVAGAAALLRQYFVDGYYPTKFNPSAALLKALLINSAR 293 (293)
T ss_pred hhheeecCcHHHHHHHHHHHHHHHHHHHHhcCcCCCcCcCHHHHHHHHHhcCC
Confidence 3678999999999999999999999985 4 6677899999999985
|
Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases |
| >cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-41 Score=357.19 Aligned_cols=260 Identities=30% Similarity=0.399 Sum_probs=183.4
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 90 SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 90 ~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
.+++|+||+|||||+|||++||+|.+... ...+|.+. ..+.|..+||||
T Consensus 3 ~~~tG~gv~VaVlDsGv~~~hp~l~~~~~-----------------------~~~~~~~~--------~~~~d~~gHGT~ 51 (297)
T cd07480 3 SPFTGAGVRVAVLDTGIDLTHPAFAGRDI-----------------------TTKSFVGG--------EDVQDGHGHGTH 51 (297)
T ss_pred CCCCCCCCEEEEEcCCCCCCChhhcCCcc-----------------------cCcccCCC--------CCCCCCCCcHHH
Confidence 57899999999999999999999974321 12233322 235678999999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCC----CCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFP----FEY 244 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~----~~~ 244 (734)
|||||+|+... +...||||+|+|+.+|++...+ ....++++||+||++.|++|||||||.... ..+
T Consensus 52 VAgiiag~~~~---------~~~~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~ 122 (297)
T cd07480 52 CAGTIFGRDVP---------GPRYGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLVDQGW 122 (297)
T ss_pred HHHHHhcccCC---------CcccccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccccccC
Confidence 99999998643 2237999999999999987654 667779999999999999999999998631 011
Q ss_pred -----CCCHHHHHHHHH---------------HhCCcEEEEcCCCCCCCCCCcCC-----CCCceEEecccccCceeEEE
Q 044427 245 -----FEDPIAIGSFHA---------------MKYGILTSNSAGNSGPDPYSVSN-----FAPWTLTVAASSIDRKFVAQ 299 (734)
Q Consensus 245 -----~~~~~~~a~~~a---------------~~~Gi~vV~AAGN~G~~~~~~~~-----~ap~vitVga~~~~~~~~~~ 299 (734)
....++.....+ .++|++||+||||+|........ ..+.+++|++....
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~gvlvV~aAGN~g~~~~~~~~~~~~~~~~~~~~V~~V~~~------ 196 (297)
T cd07480 123 PPGLAFSRALEAYRQRARLFDALMTLVAAQAALARGTLIVAAAGNESQRPAGIPPVGNPAACPSAMGVAAVGAL------ 196 (297)
T ss_pred CCCchhHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCceEEEecCCCCCCCCCCCCccCccccccccEEEEECCC------
Confidence 112233232333 67899999999999865432111 11222222221100
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceE
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLG 379 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g 379 (734)
T Consensus 197 -------------------------------------------------------------------------------- 196 (297)
T cd07480 197 -------------------------------------------------------------------------------- 196 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEe
Q 044427 380 TIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITA 459 (734)
Q Consensus 380 ~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~A 459 (734)
+....|+++.+ ....||||+|
T Consensus 197 -------------------------------------------------------~~~~~~~~~~~----~~~~~~dv~A 217 (297)
T cd07480 197 -------------------------------------------------------GRTGNFSAVAN----FSNGEVDIAA 217 (297)
T ss_pred -------------------------------------------------------CCCCCccccCC----CCCCceEEEe
Confidence 11222333322 2345789999
Q ss_pred cCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc----cccccCCCcc
Q 044427 460 PGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT----AYVMDSRKQE 535 (734)
Q Consensus 460 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T----A~~~~~~~~~ 535 (734)
||.+|+++.+. +.|..++|||||||+|||++|||+|++|.+++.+++.+|++. +......+.
T Consensus 218 pG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~l~~~l~~~~~~~~~~~~- 283 (297)
T cd07480 218 PGVDIVSAAPG-------------GGYRSMSGTSMATPHVAGVAALWAEALPKAGGRALAALLQARLTAARTTQFAPGL- 283 (297)
T ss_pred CCCCeEeecCC-------------CcEEEeCcHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHHHHhhcccCCCCCCC-
Confidence 99999998876 789999999999999999999999999999988888777743 222212222
Q ss_pred cCCCCCCCCccCcc
Q 044427 536 DLEFAYGSGHINPA 549 (734)
Q Consensus 536 ~~~~~~G~G~vn~~ 549 (734)
....+|+|++++.
T Consensus 284 -~~~~~g~G~~~~~ 296 (297)
T cd07480 284 -DLPDRGVGLGLAP 296 (297)
T ss_pred -ChhhcCCceeecC
Confidence 3678999999875
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=336.58 Aligned_cols=226 Identities=33% Similarity=0.481 Sum_probs=187.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||+||+++||+|.+. +....+|..... ....|..+|||||||||+
T Consensus 1 gv~V~iiDsGv~~~h~~l~~~-----------------------~~~~~~~~~~~~------~~~~~~~~HGT~vA~ii~ 51 (229)
T cd07477 1 GVKVAVIDTGIDSSHPDLKLN-----------------------IVGGANFTGDDN------NDYQDGNGHGTHVAGIIA 51 (229)
T ss_pred CCEEEEEcCCCCCCChhHhcc-----------------------ccCcccccCCCC------CCCCCCCCCHHHHHHHHh
Confidence 799999999999999999743 222223333211 345678899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
+..... .+.|+||+|+|+.+|+++..+ ....+++++++++++.+++|||||||... ....+..++.
T Consensus 52 ~~~~~~---------~~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~~~~~Vin~S~g~~~----~~~~~~~~~~ 118 (229)
T cd07477 52 ALDNGV---------GVVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIENGMDIINMSLGGPS----DSPALREAIK 118 (229)
T ss_pred cccCCC---------ccEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEECCccCC----CCHHHHHHHH
Confidence 986431 238999999999999998776 56789999999999999999999999873 2345666777
Q ss_pred HHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCc
Q 044427 255 HAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAA 332 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~ 332 (734)
.+.++|+++|+||||++...... +...+++|+||+++.+
T Consensus 119 ~a~~~giliv~aaGN~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------------------------- 159 (229)
T cd07477 119 KAYAAGILVVAAAGNSGNGDSSYDYPAKYPSVIAVGAVDSN--------------------------------------- 159 (229)
T ss_pred HHHHCCCEEEEecCCCCCCCCCccCCCCCCCEEEEEeecCC---------------------------------------
Confidence 88899999999999999776554 6677899999885432
Q ss_pred ccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHH
Q 044427 333 NYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDY 412 (734)
Q Consensus 333 ~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~ 412 (734)
T Consensus 160 -------------------------------------------------------------------------------- 159 (229)
T cd07477 160 -------------------------------------------------------------------------------- 159 (229)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccc
Q 044427 413 IRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGT 492 (734)
Q Consensus 413 ~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGT 492 (734)
+.++.||++|+.. |+.|||.+|+++++. +.|..++||
T Consensus 160 ----------------------~~~~~~s~~g~~~--------~~~apg~~i~~~~~~-------------~~~~~~~GT 196 (229)
T cd07477 160 ----------------------NNRASFSSTGPEV--------ELAAPGVDILSTYPN-------------NDYAYLSGT 196 (229)
T ss_pred ----------------------CCcCCccCCCCCc--------eEEeCCCCeEEecCC-------------CCEEEEccH
Confidence 2466789999865 999999999999876 678999999
Q ss_pred cchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 493 SMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 493 SmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
|||||+|||++|||+|++|++++.+||++|++|
T Consensus 197 S~Aap~vag~~All~~~~~~~~~~~i~~~l~~t 229 (229)
T cd07477 197 SMATPHVAGVAALVWSKRPELTNAQVRQALNKT 229 (229)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 999999999999999999999999999999976
|
This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug |
| >cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=341.46 Aligned_cols=246 Identities=29% Similarity=0.413 Sum_probs=189.5
Q ss_pred CCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccc---ccc-CCcccCcee--EeeeecCCCCccccCCCCCCCCCCCChH
Q 044427 95 GSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGI---CTG-ANFTCNNKI--IGARYYNSENIYEVTDFHSPRDSEGHGT 168 (734)
Q Consensus 95 ~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~---~~~-~~f~~n~ki--~g~~~~~~~~~~~~~~~~~~~D~~gHGT 168 (734)
+||+|||||||||++||+|.+.. |... +.. .+...+..+ ...++|.. ....+.|..+|||
T Consensus 2 ~~v~V~iiDtGid~~h~~l~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~d~~~HGT 67 (259)
T cd07473 2 GDVVVAVIDTGVDYNHPDLKDNM-------WVNPGEIPGNGIDDDGNGYVDDIYGWNFVN-------NDNDPMDDNGHGT 67 (259)
T ss_pred CCCEEEEEeCCCCCCChhhcccc-------ccCcccccccCcccCCCCcccCCCcccccC-------CCCCCCCCCCcHH
Confidence 78999999999999999998542 2211 100 000000000 00111111 2245678899999
Q ss_pred HHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC
Q 044427 169 HTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 169 hVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~ 247 (734)
||||||+|...... .+.|+||+|+|+.+|++...+ ++..+++++|+++++.+++|||+|||.... ..
T Consensus 68 ~va~ii~~~~~~~~--------~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~vin~S~G~~~~----~~ 135 (259)
T cd07473 68 HVAGIIGAVGNNGI--------GIAGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVDMGAKIINNSWGGGGP----SQ 135 (259)
T ss_pred HHHHHHHCcCCCCC--------ceEEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCC----CH
Confidence 99999999864321 248999999999999998876 788899999999999999999999998832 56
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCCC---CcCC--CCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 248 PIAIGSFHAMKYGILTSNSAGNSGPDPY---SVSN--FAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 248 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~---~~~~--~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
.+..++.++..+|++||+||||+|.... .++. ..+++|+||+.+.+
T Consensus 136 ~~~~~~~~~~~~g~ivV~aaGN~g~~~~~~~~~p~~~~~~~vi~Vga~~~~----------------------------- 186 (259)
T cd07473 136 ALRDAIARAIDAGILFVAAAGNDGTNNDKTPTYPASYDLDNIISVAATDSN----------------------------- 186 (259)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCCCCCCCCCcCcCcccCCCCeEEEEecCCC-----------------------------
Confidence 7777888889999999999999987632 2232 24677888764322
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (259)
T cd07473 187 -------------------------------------------------------------------------------- 186 (259)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTR 482 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 482 (734)
+.++.||++||. +||+.|||.++++..+.
T Consensus 187 --------------------------------~~~~~~s~~g~~-------~~~~~apG~~~~~~~~~------------ 215 (259)
T cd07473 187 --------------------------------DALASFSNYGKK-------TVDLAAPGVDILSTSPG------------ 215 (259)
T ss_pred --------------------------------CCcCcccCCCCC-------CcEEEeccCCeEeccCC------------
Confidence 256679999986 47999999999997665
Q ss_pred CcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 483 SVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 483 ~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
..|..++|||||||+|||++|||+|++|.+++++||++|++||+
T Consensus 216 -~~~~~~~GTS~AaP~vaG~~All~~~~~~~t~~~v~~~L~~tA~ 259 (259)
T cd07473 216 -GGYGYMSGTSMATPHVAGAAALLLSLNPNLTAAQIKDAILSSAD 259 (259)
T ss_pred -CcEEEeccHhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999999999999999999999999999984
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-40 Score=346.23 Aligned_cols=247 Identities=17% Similarity=0.165 Sum_probs=176.2
Q ss_pred ccccCcc-CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 83 GFSKGKL-SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 83 g~~~~~~-~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++..+|. ....|+||+|+|||+|||.+||+|.+.... .... ..+.
T Consensus 3 ~~~~aw~~~~g~G~gV~VaviDtGid~~Hpdl~~~~~~--------------------------~~~~--------~~~~ 48 (277)
T cd04843 3 NARYAWTKPGGSGQGVTFVDIEQGWNLNHEDLVGNGIT--------------------------LISG--------LTDQ 48 (277)
T ss_pred ChHHHHHhcCCCCCcEEEEEecCCCCCCChhhcccccc--------------------------ccCC--------CCCC
Confidence 4455673 345699999999999999999999754211 0000 1245
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh----CCCcEEEEccC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA----DGVDIISVSLG 237 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~----~g~dVINlSlG 237 (734)
|+.+|||||||||+|..+. +| +.||||+|+|+.+|+++ ..+++++|.+|++ .++.+||||||
T Consensus 49 d~~gHGT~VAGiIaa~~n~----~G-----~~GvAp~a~l~~i~v~~-----~~~~~~ai~~A~~~~~~~~v~~in~s~g 114 (277)
T cd04843 49 ADSDHGTAVLGIIVAKDNG----IG-----VTGIAHGAQAAVVSSTR-----VSNTADAILDAADYLSPGDVILLEMQTG 114 (277)
T ss_pred CCCCCcchhheeeeeecCC----Cc-----eeeeccCCEEEEEEecC-----CCCHHHHHHHHHhccCCCCEEEEEcccc
Confidence 7889999999999987421 22 38999999999999975 3456777777777 34678899999
Q ss_pred CCCCCC-----CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC------------C-CCCceEEecccccCceeEEE
Q 044427 238 SDFPFE-----YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS------------N-FAPWTLTVAASSIDRKFVAQ 299 (734)
Q Consensus 238 ~~~~~~-----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~------------~-~ap~vitVga~~~~~~~~~~ 299 (734)
...... .....+..++.++.++|+++|+||||++....... + ..|++|+|||++.+
T Consensus 115 ~~~~~~~~~p~~~~~~~~~av~~a~~~G~~vV~AAGN~~~~~~~~~~~~g~~~~~~~~~~~~~~vI~VgA~~~~------ 188 (277)
T cd04843 115 GPNNGYPPLPVEYEQANFDAIRTATDLGIIVVEAAGNGGQDLDAPVYNRGPILNRFSPDFRDSGAIMVGAGSST------ 188 (277)
T ss_pred CCCcCcccCcchhhHHHHHHHHHHHhCCcEEEEeCCCCCccccCcccccccccccCCcCcCCCCeEEEEeccCC------
Confidence 873211 12234556777888999999999999986531110 0 12456666654321
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceE
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLG 379 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g 379 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (277)
T cd04843 189 -------------------------------------------------------------------------------- 188 (277)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEe
Q 044427 380 TIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITA 459 (734)
Q Consensus 380 ~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~A 459 (734)
....++.||++|+.. ||.|
T Consensus 189 -----------------------------------------------------~~~~~~~fSn~G~~v--------di~A 207 (277)
T cd04843 189 -----------------------------------------------------TGHTRLAFSNYGSRV--------DVYG 207 (277)
T ss_pred -----------------------------------------------------CCCccccccCCCCcc--------ceEc
Confidence 001378999999976 9999
Q ss_pred cCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHh----h-CCCCCHHHHHHHHHhccc
Q 044427 460 PGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKA----A-HPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 460 PG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~-~P~ls~~~vk~~L~~TA~ 527 (734)
||++|+++....... ........|..++|||||||||||++|||++ + +|+|+++|||++|++|+.
T Consensus 208 PG~~i~s~~~~~~~~---~~~~~~~~~~~~sGTS~AaP~VaG~aALl~s~~~~~~~p~lt~~~v~~~L~~t~~ 277 (277)
T cd04843 208 WGENVTTTGYGDLQD---LGGENQDYTDSFSGTSSASPIVAGAAASIQGIAKQKGGTPLTPIEMRELLTATGT 277 (277)
T ss_pred CCCCeEecCCCCccc---ccCCCCcceeeecccchhhHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhcCC
Confidence 999999998763211 0111123457899999999999999999974 3 499999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=355.19 Aligned_cols=276 Identities=32% Similarity=0.476 Sum_probs=209.1
Q ss_pred EEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccC
Q 044427 98 IIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGR 177 (734)
Q Consensus 98 ~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~ 177 (734)
+|||||||||++||+|....+ ...++.+.+.|.++. .......|..+|||||||||+|.
T Consensus 1 ~V~viDtGid~~h~~~~~~~~-----------------~~~~~~~~~~~~~~~----~~~~~~~~~~~HGT~va~ii~~~ 59 (282)
T PF00082_consen 1 KVAVIDTGIDPNHPDFSSGNF-----------------IWSKVPGGYNFVDGN----PNPSPSDDDNGHGTHVAGIIAGN 59 (282)
T ss_dssp EEEEEESBBTTTSTTTTCTTE-----------------EEEEEEEEEETTTTB----STTTSSSTSSSHHHHHHHHHHHT
T ss_pred CEEEEcCCcCCCChhHccCCc-----------------ccccccceeeccCCC----CCcCccccCCCccchhhhhcccc
Confidence 699999999999999972111 112344455666543 11245567889999999999998
Q ss_pred CCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHH-hCCCcEEEEccCCCC--CCCCCCCHHHHHHH
Q 044427 178 EVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAI-ADGVDIISVSLGSDF--PFEYFEDPIAIGSF 254 (734)
Q Consensus 178 ~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai-~~g~dVINlSlG~~~--~~~~~~~~~~~a~~ 254 (734)
. . .+. ....|+||+|+|+.+|+++..+....+++++|++++ +.+++|||||||... ........+..+..
T Consensus 60 ~-~-~~~-----~~~~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~~~ 132 (282)
T PF00082_consen 60 G-G-NNG-----PGINGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNSGPPDPSYSDILEEAID 132 (282)
T ss_dssp T-S-SSS-----SSETCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEESSSHSHHHHHHHHHHH
T ss_pred c-c-ccc-----cccccccccccccccccccccccccccccchhhhhhhccCCccccccccccccccccccccccccccc
Confidence 6 2 111 123899999999999998877677888999999999 899999999999832 11222334556666
Q ss_pred HHHhCCcEEEEcCCCCCCCCCC---cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCC
Q 044427 255 HAMKYGILTSNSAGNSGPDPYS---VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDA 331 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~---~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~ 331 (734)
.+.++|+++|+||||+|..... .+...+++|+||+.+..
T Consensus 133 ~~~~~g~l~v~aaGN~~~~~~~~~~~Pa~~~~vi~Vg~~~~~-------------------------------------- 174 (282)
T PF00082_consen 133 YAEKKGILIVFAAGNNGPNDDRNISFPASSPNVITVGAVDNN-------------------------------------- 174 (282)
T ss_dssp HHHHTTEEEEEE--SSSSBTTBTGEBTTTSTTSEEEEEEETT--------------------------------------
T ss_pred cccccCcceeeccccccccccccccccccccccccccccccc--------------------------------------
Confidence 7889999999999999876653 33445778888874321
Q ss_pred cccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHH
Q 044427 332 ANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 332 ~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~ 411 (734)
T Consensus 175 -------------------------------------------------------------------------------- 174 (282)
T PF00082_consen 175 -------------------------------------------------------------------------------- 174 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEecc
Q 044427 412 YIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491 (734)
Q Consensus 412 ~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sG 491 (734)
+.++.||++|+.. .++++||||+|||.+|++.++... ...|..++|
T Consensus 175 -----------------------~~~~~~s~~g~~~-~~~~~~~di~a~G~~i~~~~~~~~----------~~~~~~~~G 220 (282)
T PF00082_consen 175 -----------------------GQPASYSNYGGPS-DDGRIKPDIAAPGGNILSAVPGSD----------RGSYTSFSG 220 (282)
T ss_dssp -----------------------SSBSTTSSBSTTE-TTCTTCEEEEEECSSEEEEETTTE----------SEEEEEEES
T ss_pred -----------------------ccccccccccccc-cccccccccccccccccccccccc----------cccccccCc
Confidence 2467899996543 278999999999999988887620 145889999
Q ss_pred ccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 492 TSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
||||||+|||++|||+|++|+|++.+||.+|++||.+.........+..||||+||+.+|++
T Consensus 221 TS~Aap~vag~~All~~~~p~~~~~~i~~~l~~ta~~~~~~~~~~~~~~~G~G~in~~~a~~ 282 (282)
T PF00082_consen 221 TSFAAPVVAGAAALLLSKYPNLTPAEIKALLINTADDLGSTNGEGYDNSYGWGLINAEKALN 282 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHSBESSETTSSSSHHHHTTSBE-HHHHHH
T ss_pred CCchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCcCCCCCCCCCccCChhCHHHHhC
Confidence 99999999999999999999999999999999999998832222247788999999999874
|
; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A .... |
| >cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7 | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=339.47 Aligned_cols=216 Identities=21% Similarity=0.194 Sum_probs=167.3
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
+++|+|||||||||++||+|.+. +...++|...............|..|||||||||
T Consensus 2 ~~~V~VaVIDsGvd~~hpdl~~~-----------------------i~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgi 58 (247)
T cd07491 2 LKRIKVALIDDGVDILDSDLQGK-----------------------IIGGKSFSPYEGDGNKVSPYYVSADGHGTAMARM 58 (247)
T ss_pred CCCCEEEEECCCcCCCchhhccc-----------------------cccCCCCCCCCCCcccCCCCCCCCCCcHHHHHHH
Confidence 78999999999999999999743 2222233322110000112235688999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-------CCHHHHHHHHHHHHhCCCcEEEEccCCCCCC--CC
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-------CATADILAAFDDAIADGVDIISVSLGSDFPF--EY 244 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-------~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~--~~ 244 (734)
|+ |+||+|+|+.+|+++..+ ++..++++||+||+++|+||||||||..... ..
T Consensus 59 I~------------------gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~~~~~ 120 (247)
T cd07491 59 IC------------------RICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPEDNDN 120 (247)
T ss_pred HH------------------HHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccccccc
Confidence 94 679999999999998643 4567899999999999999999999987321 11
Q ss_pred CCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-Cc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCc
Q 044427 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGI 321 (734)
Q Consensus 245 ~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (734)
....+..++.+|.++|++||+||||+|.... .+ +...|++|+|||.+.+
T Consensus 121 ~~~~l~~ai~~A~~~GilvvaaAGN~g~~~~~~~~~pa~~~~Vi~VgA~~~~---------------------------- 172 (247)
T cd07491 121 DINELENAIKEALDRGILLFCSASDQGAFTGDTYPPPAARDRIFRIGAADED---------------------------- 172 (247)
T ss_pred chHHHHHHHHHHHhCCeEEEEecCCCCCcCCCcccCcccCCCeEEEEeeCCC----------------------------
Confidence 2567888888999999999999999997764 33 3346899999986533
Q ss_pred eeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEe
Q 044427 322 SYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLI 401 (734)
Q Consensus 322 ~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 401 (734)
T Consensus 173 -------------------------------------------------------------------------------- 172 (247)
T cd07491 173 -------------------------------------------------------------------------------- 172 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCC
Q 044427 402 SKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481 (734)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 481 (734)
+.++.||++|+.. |+.|||++|+++.+..
T Consensus 173 ---------------------------------g~~~~~S~~g~~v--------d~~APG~~i~s~~~~~---------- 201 (247)
T cd07491 173 ---------------------------------GGADAPVGDEDRV--------DYILPGENVEARDRPP---------- 201 (247)
T ss_pred ---------------------------------CCCccccCCCCcc--------eEEeCCCceecCCcCC----------
Confidence 2567789999877 9999999999987520
Q ss_pred CCcceEEeccccchhhHHHHHHHHHHhh
Q 044427 482 RSVSFNIISGTSMSCPHASGSAAYVKAA 509 (734)
Q Consensus 482 ~~~~y~~~sGTSmAaP~VAG~aALl~q~ 509 (734)
..+.|..++|||||||||||++|||++.
T Consensus 202 ~~~~~~~~sGTS~Atp~vaGvaAL~l~~ 229 (247)
T cd07491 202 LSNSFVTHTGSSVATALAAGLAALILYC 229 (247)
T ss_pred CCCCeeeeccHHHHHHHHHHHHHHHHHH
Confidence 1267999999999999999999999974
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=346.73 Aligned_cols=151 Identities=28% Similarity=0.335 Sum_probs=107.2
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
.|+|||||||||++||+|.+.-... .+ .+.....+.......+.+.....|..||||||||||+
T Consensus 1 ~V~VaviDtGi~~~hp~l~~~~~~~----~~------------~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~vAgiia 64 (294)
T cd07482 1 KVTVAVIDSGIDPDHPDLKNSISSY----SK------------NLVPKGGYDGKEAGETGDINDIVDKLGHGTAVAGQIA 64 (294)
T ss_pred CcEEEEEeCCCCCCChhHhhccccc----cc------------ccccCCCcCCccccccCCCCcCCCCCCcHhHHHHHHh
Confidence 3899999999999999998531110 00 0000000111001111122445678999999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCCC-CHHHHHHHHHHHHhCCCcEEEEccCCCCCCCC-------CCC
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC-ATADILAAFDDAIADGVDIISVSLGSDFPFEY-------FED 247 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~-~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~-------~~~ 247 (734)
|+... .||||+|+|+.+|+++..+. ...+++++|++|++++++|||||||....... ...
T Consensus 65 ~~~~~------------~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~~~~~~~~~~~~ 132 (294)
T cd07482 65 ANGNI------------KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIGGEYEDDDVEYN 132 (294)
T ss_pred cCCCC------------ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCCcccccchhhhH
Confidence 87422 59999999999999988764 88899999999999999999999998632111 113
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCC
Q 044427 248 PIAIGSFHAMKYGILTSNSAGNSGPDP 274 (734)
Q Consensus 248 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~ 274 (734)
.+..++..+.++|++||+||||+|...
T Consensus 133 ~~~~~i~~a~~~g~lvv~AAGN~g~~~ 159 (294)
T cd07482 133 AYKKAINYAKSKGSIVVAAAGNDGLDV 159 (294)
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCccc
Confidence 456667778899999999999998654
|
Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h |
| >KOG1153 consensus Subtilisin-related protease/Vacuolar protease B [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=340.91 Aligned_cols=308 Identities=27% Similarity=0.382 Sum_probs=243.7
Q ss_pred CchhhHHHHHHHHhCCcc------ccCc------------ceEEEec---ceeeEEEEEeCHHHHHHHhcCCCeeEEEeC
Q 044427 10 PVASTHHSMLQNVLGSTL------SAKE------------SLVYSYG---RSFNGFAAKLTDEEVARFSETEGVISVIPN 68 (734)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~------~~~~------------~v~~~y~---~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~ 68 (734)
.-.+.|.+|++..+.... ++-. .+.+.|. .+|+|+.-..+.+-+..+++.|-++.+++.
T Consensus 94 ~~~s~~~~~~~~~h~~s~~~~s~~~~f~~~d~~~s~~~~~~i~~~f~i~~~~~~~y~~~ft~~~v~~i~~~p~~~~ve~~ 173 (501)
T KOG1153|consen 94 QKISAHNRWVQQSHEVSSGKLSSEDAFYVKDTSDSKSTFGGIKNVFDIGGRVFRGYTGYFTGESVCSIRSDPLIKAVEKD 173 (501)
T ss_pred HHHHhhhHHHHHHhhhhhccccccceeEeeccccchhhhcccccccccccchhhccccccccceeeeeccCcceeecccc
Confidence 456788899988885211 1111 1444554 378899999999999999999999999887
Q ss_pred cccccc--------cCCCcccccccc-------Cc----cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccc
Q 044427 69 HKLKIH--------TTRSWDFMGFSK-------GK----LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC 129 (734)
Q Consensus 69 ~~~~~~--------~~~s~~~~g~~~-------~~----~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~ 129 (734)
...+.. ...+|.+..+.. .| .....|+||...|+||||+.+||+|.+. +.|
T Consensus 174 ~~v~~~~~~~i~~Q~~APwgLaRvsh~~~~~y~~~~~Y~Y~~~aG~gvtaYv~DTGVni~H~dFegR------a~w---- 243 (501)
T KOG1153|consen 174 SVVEVDKISTIMLQNNAPWGLARVSHREKLKYDSWGNYVYEIDAGKGVTAYVLDTGVNIEHPDFEGR------AIW---- 243 (501)
T ss_pred cccccccccceecccCCchhhhhhcccccccccchheEEeecccCCCeEEEEecccccccccccccc------eec----
Confidence 765532 233454433332 22 3445899999999999999999999854 223
Q ss_pred ccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC
Q 044427 130 TGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS 209 (734)
Q Consensus 130 ~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~ 209 (734)
|+..... ....|++||||||||+|++.. .|||-+++|+++||+++
T Consensus 244 ------------Ga~i~~~---------~~~~D~nGHGTH~AG~I~sKt--------------~GvAK~s~lvaVKVl~~ 288 (501)
T KOG1153|consen 244 ------------GATIPPK---------DGDEDCNGHGTHVAGLIGSKT--------------FGVAKNSNLVAVKVLRS 288 (501)
T ss_pred ------------ccccCCC---------CcccccCCCcceeeeeeeccc--------------cccccccceEEEEEecc
Confidence 1111111 245689999999999999885 79999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHhC---------CCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcC
Q 044427 210 DG-CATADILAAFDDAIAD---------GVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVS 278 (734)
Q Consensus 210 ~g-~~~~~i~~ai~~ai~~---------g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~ 278 (734)
+| ++.+++++++|++++. +..|.|||+|+.. .-.+..|++.|.+.|+++++||||+..+.+ +.+
T Consensus 289 dGsGt~Sdvi~GvE~~~k~h~~~k~~~~k~sv~NlSlGg~~-----S~aLn~AV~~A~~~Gi~fa~AAGNe~eDAC~~SP 363 (501)
T KOG1153|consen 289 DGSGTVSDVIKGVEFVVKHHEKKKKKEGKKSVANLSLGGFR-----SAALNMAVNAASERGIHFAVAAGNEHEDACNSSP 363 (501)
T ss_pred CCcEeHHHHHhHHHHHHHHhhhhhcccCCCeEEEEecCCcc-----cHHHHHHHHHHhhcCeEEEEcCCCcchhhhccCc
Confidence 88 8999999999999986 4789999999982 346888999999999999999999987765 556
Q ss_pred CCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCc
Q 044427 279 NFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEG 358 (734)
Q Consensus 279 ~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~g 358 (734)
..+..+|||||++..
T Consensus 364 ass~~aITVGAst~~----------------------------------------------------------------- 378 (501)
T KOG1153|consen 364 ASSKKAITVGASTKN----------------------------------------------------------------- 378 (501)
T ss_pred ccccccEEecccccc-----------------------------------------------------------------
Confidence 678899999997643
Q ss_pred eEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCcee
Q 044427 359 KIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVV 438 (734)
Q Consensus 359 kiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a 438 (734)
++++
T Consensus 379 ----------------------------------------------------------------------------D~iA 382 (501)
T KOG1153|consen 379 ----------------------------------------------------------------------------DTIA 382 (501)
T ss_pred ----------------------------------------------------------------------------cchh
Confidence 3789
Q ss_pred eccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCC------
Q 044427 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN------ 512 (734)
Q Consensus 439 ~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~------ 512 (734)
.||+||++. ||.|||.+|+|+|.++. ......||||||+|||||++|..+..+|.
T Consensus 383 ~FSN~G~CV--------diFAPGv~IlSs~iGs~-----------~at~ilSGTSMasPhvaG~aAy~ls~~~~~~~~f~ 443 (501)
T KOG1153|consen 383 FFSNWGKCV--------DIFAPGVNILSSWIGSN-----------NATAILSGTSMASPHVAGLAAYFLSLGPLPDSSFA 443 (501)
T ss_pred hhcCcccee--------eeecCchhhhhhhhcCc-----------cchheeecccccCcchhhhHHHhhhcCCCChHHhh
Confidence 999999999 99999999999999842 56789999999999999999999998883
Q ss_pred ---CCHHHHHHHHHhccc
Q 044427 513 ---WSPSSIKSALMTTAY 527 (734)
Q Consensus 513 ---ls~~~vk~~L~~TA~ 527 (734)
.++.++|..++.-..
T Consensus 444 n~~~s~~~lk~~~l~~~~ 461 (501)
T KOG1153|consen 444 NDAGSPSELKKRLLKFKT 461 (501)
T ss_pred hccCChHHhhhhhhcccc
Confidence 378888888776544
|
|
| >cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=324.49 Aligned_cols=221 Identities=21% Similarity=0.249 Sum_probs=172.9
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
||+|||||||||++||+|.+.... .+.+..+. ...+.....|..||||||||||+
T Consensus 1 gV~VaViDsGi~~~h~~l~~~~~~-----------------------~~~~~~~~--~~~~~~~~~d~~gHGT~vAgiia 55 (222)
T cd07492 1 GVRVAVIDSGVDTDHPDLGNLALD-----------------------GEVTIDLE--IIVVSAEGGDKDGHGTACAGIIK 55 (222)
T ss_pred CCEEEEEeCCCCCCChhhhccccc-----------------------cccccccc--cccCCCCCCCCCCcHHHHHHHHH
Confidence 799999999999999999753211 11111000 00111445678899999999997
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
+. +|+++|+.+|+++..+ +...++++||+|+++++++|||||||... ......+..++.
T Consensus 56 ~~------------------~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~--~~~~~~~~~~~~ 115 (222)
T cd07492 56 KY------------------APEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPG--DRDFPLLKELLE 115 (222)
T ss_pred cc------------------CCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCC--CCcCHHHHHHHH
Confidence 53 5999999999998776 77888999999999999999999999873 223356677788
Q ss_pred HHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCccc
Q 044427 255 HAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANY 334 (734)
Q Consensus 255 ~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~ 334 (734)
++.++|+++|+||||++.... .+...+++|+|++...+.
T Consensus 116 ~a~~~g~l~V~aagN~~~~~~-~Pa~~~~vi~V~~~~~~~---------------------------------------- 154 (222)
T cd07492 116 YAYKAGGIIVAAAPNNNDIGT-PPASFPNVIGVKSDTADD---------------------------------------- 154 (222)
T ss_pred HHHHCCCEEEEECCCCCCCCC-CCccCCceEEEEecCCCC----------------------------------------
Confidence 888999999999999986543 255667888888743220
Q ss_pred CCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHh
Q 044427 335 SAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 335 ~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
T Consensus 155 -------------------------------------------------------------------------------- 154 (222)
T cd07492 155 -------------------------------------------------------------------------------- 154 (222)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccc
Q 044427 415 STEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494 (734)
Q Consensus 415 ~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSm 494 (734)
.. +.+++ ++++.|||.+|+++.+. +.|..++||||
T Consensus 155 ---------------------~~---~~~~~--------~~~~~apg~~i~~~~~~-------------~~~~~~~GTS~ 189 (222)
T cd07492 155 ---------------------PK---SFWYI--------YVEFSADGVDIIAPAPH-------------GRYLTVSGNSF 189 (222)
T ss_pred ---------------------Cc---ccccC--------CceEEeCCCCeEeecCC-------------CCEEEeccHHH
Confidence 01 11133 35999999999998876 67999999999
Q ss_pred hhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 495 AaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|||+|||++|||+|++|+|+++|||++|+.||+
T Consensus 190 Aap~vaG~~All~~~~p~l~~~~v~~~L~~tA~ 222 (222)
T cd07492 190 AAPHVTGMVALLLSEKPDIDANDLKRLLQRLAV 222 (222)
T ss_pred HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999999985
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-39 Score=341.90 Aligned_cols=251 Identities=20% Similarity=0.153 Sum_probs=180.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC-
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP- 160 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~- 160 (734)
+++...|..+++|+||+|+|||||||++||+|.+.... ...++|..... ...+
T Consensus 26 ~~~~~~w~~g~~G~gv~VaViDtGv~~~h~~l~~~~~~---------------------~~~~~~~~~~~-----~~~~~ 79 (297)
T cd04059 26 LNVTPAWEQGITGKGVTVAVVDDGLEITHPDLKDNYDP---------------------EASYDFNDNDP-----DPTPR 79 (297)
T ss_pred cccHHHHhCCCCCcceEEEEEeCCcccCCHhHhhcccc---------------------cccccccCCCC-----CCCCc
Confidence 34455788899999999999999999999999754211 01122222211 0122
Q ss_pred -CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 161 -RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 161 -~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|+.... . ...||||+|+|+.+|++... .....+..++.++.+ .++|||||||..
T Consensus 80 ~~~~~gHGT~vAgiiag~~~~~---~-----~~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~~~~-~~~Vin~S~g~~ 149 (297)
T cd04059 80 YDDDNSHGTRCAGEIAAVGNNG---I-----CGVGVAPGAKLGGIRMLDGD-VTDVVEAESLGLNPD-YIDIYSNSWGPD 149 (297)
T ss_pred cccccccCcceeeEEEeecCCC---c-----ccccccccceEeEEEecCCc-cccHHHHHHHhcccC-CceEEECCCCCC
Confidence 278899999999999986431 1 12899999999999998754 333445556555543 569999999987
Q ss_pred CCCC---CCCCHHHHHHHHHHh-----CCcEEEEcCCCCCCCCCC----cCCCCCceEEecccccCceeEEEEEeCCCeE
Q 044427 240 FPFE---YFEDPIAIGSFHAMK-----YGILTSNSAGNSGPDPYS----VSNFAPWTLTVAASSIDRKFVAQAVLGNGIT 307 (734)
Q Consensus 240 ~~~~---~~~~~~~~a~~~a~~-----~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVga~~~~~~~~~~~~~~~g~~ 307 (734)
.... ........++.++.. +|++||+||||+|..... .....|++|+|||++.+
T Consensus 150 ~~~~~~~~~~~~~~~a~~~a~~~~~~~~gilvV~AAGN~g~~~~~~~~~~~~~~~~vi~Vga~~~~-------------- 215 (297)
T cd04059 150 DDGKTVDGPGPLAQRALENGVTNGRNGKGSIFVWAAGNGGNLGDNCNCDGYNNSIYTISVSAVTAN-------------- 215 (297)
T ss_pred CCCCccCCCcHHHHHHHHHHHHhCCCCCceEEEEeCCCCCCCCCCCCCCcccCCCceEEEEeeCCC--------------
Confidence 4221 122334445555543 699999999999974321 12235778888875422
Q ss_pred eeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCc
Q 044427 308 YPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 308 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
T Consensus 216 -------------------------------------------------------------------------------- 215 (297)
T cd04059 216 -------------------------------------------------------------------------------- 215 (297)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCC----
Q 044427 388 TDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVD---- 463 (734)
Q Consensus 388 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~---- 463 (734)
+.++.||++|+.. ++.|||..
T Consensus 216 -----------------------------------------------g~~~~~s~~g~~~--------~~~a~g~~~~~~ 240 (297)
T cd04059 216 -----------------------------------------------GVRASYSEVGSSV--------LASAPSGGSGNP 240 (297)
T ss_pred -----------------------------------------------CCCcCCCCCCCcE--------EEEecCCCCCCC
Confidence 3567899999987 89999987
Q ss_pred ---EeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 464 ---ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 464 ---I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
|+++.... ....|..++|||||||+|||++|||+|++|+|++.+||++|++||+
T Consensus 241 ~~~i~~~~~~~----------~~~~~~~~sGTS~AaP~VAG~aAll~~~~p~lt~~~v~~~L~~TA~ 297 (297)
T cd04059 241 EASIVTTDLGG----------NCNCTSSHNGTSAAAPLAAGVIALMLEANPNLTWRDVQHILALTAR 297 (297)
T ss_pred CCceEeCCCCC----------CCCcccccCCcchhhhhhHhHHHHhhccCCCCCHHHHHHHHHHhcC
Confidence 66554431 0256788999999999999999999999999999999999999985
|
Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. |
| >cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=327.99 Aligned_cols=243 Identities=28% Similarity=0.365 Sum_probs=185.6
Q ss_pred CCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHH
Q 044427 93 QEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSS 172 (734)
Q Consensus 93 ~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAG 172 (734)
+|+||+|+|||+||+++||+|.+..... ..+..... .......|..+|||||||
T Consensus 1 tG~gv~VaiiDsG~~~~h~~l~~~~~~~-----------------------~~~~~~~~---~~~~~~~~~~~HGT~vag 54 (267)
T cd04848 1 TGAGVKVGVIDSGIDLSHPEFAGRVSEA-----------------------SYYVAVND---AGYASNGDGDSHGTHVAG 54 (267)
T ss_pred CCCceEEEEEeCCCCCCCccccCccccc-----------------------cccccccc---ccCCCCCCCCChHHHHHH
Confidence 6999999999999999999998542210 00000000 001344568899999999
Q ss_pred HhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-------
Q 044427 173 TAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFE------- 243 (734)
Q Consensus 173 i~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~------- 243 (734)
||+|+... ..+.|+||+|+|+.+|+++..+ .....+.++++++++.+++|||||||......
T Consensus 55 iiag~~~~---------~~~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~ 125 (267)
T cd04848 55 VIAAARDG---------GGMHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYK 125 (267)
T ss_pred HHhcCcCC---------CCcccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchh
Confidence 99998643 2348999999999999998764 56677889999999999999999999884221
Q ss_pred ----CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC---------CCCCceEEecccccCceeEEEEEeCCCeEeee
Q 044427 244 ----YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS---------NFAPWTLTVAASSIDRKFVAQAVLGNGITYPG 310 (734)
Q Consensus 244 ----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~---------~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g 310 (734)
.....+...+..+.++|+++|+||||++....... ...+++|+||+.+.+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~gi~iv~aaGN~~~~~~~~~~~~~~~~~~~~~~~vi~Vga~~~~----------------- 188 (267)
T cd04848 126 GSAATQGNTLLAALARAANAGGLFVFAAGNDGQANPSLAAAALPYLEPELEGGWIAVVAVDPN----------------- 188 (267)
T ss_pred hhccccchHHHHHHHHHhhCCeEEEEeCCCCCCCCCccccccccccCccccCCEEEEEEecCC-----------------
Confidence 24566677777888999999999999986543322 234677888775433
Q ss_pred eecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCc
Q 044427 311 LSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 311 ~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (267)
T cd04848 189 -------------------------------------------------------------------------------- 188 (267)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceee--ccCCCCCCCCCCCCCCcEEecCCCEeecc
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVS--FSSRGPNPITVDILKPDITAPGVDILASW 468 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~--fSS~Gpt~~~~~~~KPDI~APG~~I~sa~ 468 (734)
+.... ||++|+.. -.+++.|||.+|+++.
T Consensus 189 --------------------------------------------~~~~~~~~s~~~~~~-----~~~~~~apG~~i~~~~ 219 (267)
T cd04848 189 --------------------------------------------GTIASYSYSNRCGVA-----ANWCLAAPGENIYSTD 219 (267)
T ss_pred --------------------------------------------CCcccccccccchhh-----hhheeecCcCceeecc
Confidence 12223 47777643 2357999999999987
Q ss_pred CCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccc
Q 044427 469 SPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAY 527 (734)
Q Consensus 469 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~ 527 (734)
+.. ...|..++|||||||+|||++|||+|++|.|++++||++|++||+
T Consensus 220 ~~~-----------~~~~~~~~GTS~Aap~vaG~~Al~~~~~p~l~~~~v~~~l~~tA~ 267 (267)
T cd04848 220 PDG-----------GNGYGRVSGTSFAAPHVSGAAALLAQKFPWLTADQVRQTLLTTAT 267 (267)
T ss_pred cCC-----------CCcccccceeEchHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhcC
Confidence 731 167899999999999999999999999999999999999999985
|
Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface. |
| >KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=320.37 Aligned_cols=338 Identities=22% Similarity=0.348 Sum_probs=260.5
Q ss_pred chhhHHHHHHHHhCCccc------cCcceEEEecceeeEEEEEeCH-----HHHHHHhcCCCeeEEEeCcccccccC---
Q 044427 11 VASTHHSMLQNVLGSTLS------AKESLVYSYGRSFNGFAAKLTD-----EEVARFSETEGVISVIPNHKLKIHTT--- 76 (734)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~------~~~~v~~~y~~~~ng~s~~~~~-----~~i~~L~~~p~V~~v~~~~~~~~~~~--- 76 (734)
.+..|+.++++.+.+..- .+...--.|-..|.-+-++-.. -+|++|..+|.|+.|.|.+.......
T Consensus 61 ~Ak~r~syi~skl~gS~VtnWriipR~Npa~~YPsDF~vl~i~e~~k~~~~~~ierLe~hp~vk~v~pqr~V~r~l~y~~ 140 (1033)
T KOG4266|consen 61 PAKDRRSYIESKLRGSGVTNWRIIPRINPATKYPSDFGVLWIEESGKEAVVGEIERLEMHPDVKVVFPQRRVLRGLSYPD 140 (1033)
T ss_pred cchHHHHHHHHHhhcCCCCceeEeeccCccccCCCccceEEEeccCccchhheeeehhcCCCceeecchhhhhhcccccc
Confidence 456788888888863332 2233334565566666555432 25789999999999999876432100
Q ss_pred ------------------C------------Cc--c----------ccccccCccCCCCCCCCEEEEEccCCCCCCCCCC
Q 044427 77 ------------------R------------SW--D----------FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFN 114 (734)
Q Consensus 77 ------------------~------------s~--~----------~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~ 114 (734)
. .| . .++++..|..|+||++|+|||.|||+.-+||.|+
T Consensus 141 ~~~~p~n~t~~~~~~qg~~~~r~a~~s~~~~n~~RHl~a~~rQv~s~l~Ad~LWk~GyTGa~VkvAiFDTGl~~~HPHFr 220 (1033)
T KOG4266|consen 141 GKKRPGNITTSMSFEQGTESSRMADTSNTTLNWSRHLLAQKRQVTSMLGADHLWKKGYTGAKVKVAIFDTGLRADHPHFR 220 (1033)
T ss_pred cCCCCCcceeeeeccccccccCCccccccccccchhhhhhhHHHHHHhchhhHHhccccCCceEEEEeecccccCCcccc
Confidence 0 00 0 1223335799999999999999999999999997
Q ss_pred CCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceee
Q 044427 115 DKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARG 194 (734)
Q Consensus 115 ~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~G 194 (734)
.- ..-.++++. ....|.-||||.|||+|||... ..|
T Consensus 221 nv------------------------KERTNWTNE--------~tLdD~lgHGTFVAGvia~~~e------------c~g 256 (1033)
T KOG4266|consen 221 NV------------------------KERTNWTNE--------DTLDDNLGHGTFVAGVIAGRNE------------CLG 256 (1033)
T ss_pred ch------------------------hhhcCCcCc--------cccccCcccceeEeeeeccchh------------hcc
Confidence 21 111233333 4566789999999999998852 279
Q ss_pred ecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCC
Q 044427 195 GVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD 273 (734)
Q Consensus 195 vAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~ 273 (734)
.||+++|+++|||-+.. .+.+++++|+.||+...+||+|+|+|++ .+.+.++-.-+.++.+.+|++|.|+||+|+-
T Consensus 257 fa~d~e~~~frvft~~qVSYTSWFLDAFNYAI~~kidvLNLSIGGP---DfmD~PFVeKVwEltAnNvIMvSAiGNDGPL 333 (1033)
T KOG4266|consen 257 FASDTEIYAFRVFTDAQVSYTSWFLDAFNYAIATKIDVLNLSIGGP---DFMDLPFVEKVWELTANNVIMVSAIGNDGPL 333 (1033)
T ss_pred cCCccceeEEEeeccceeehhhHHHHHHHHHHhhhcceEeeccCCc---ccccchHHHHHHhhccCcEEEEEecCCCCcc
Confidence 99999999999998765 7889999999999999999999999998 5777888777778889999999999999998
Q ss_pred CCCcCCCCC--ceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccC
Q 044427 274 PYSVSNFAP--WTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADAL 351 (734)
Q Consensus 274 ~~~~~~~ap--~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~ 351 (734)
.++..+++. .++.||.-
T Consensus 334 YGTLNNPaDQsDViGVGGI------------------------------------------------------------- 352 (1033)
T KOG4266|consen 334 YGTLNNPADQSDVIGVGGI------------------------------------------------------------- 352 (1033)
T ss_pred eeecCCcccccceeeeccc-------------------------------------------------------------
Confidence 888777653 33333321
Q ss_pred CCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeec
Q 044427 352 NSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD 431 (734)
Q Consensus 352 ~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~ 431 (734)
T Consensus 353 -------------------------------------------------------------------------------- 352 (1033)
T KOG4266|consen 353 -------------------------------------------------------------------------------- 352 (1033)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCceeeccCCCCCCC----CCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHH
Q 044427 432 AMAPKVVSFSSRGPNPI----TVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVK 507 (734)
Q Consensus 432 ~~~~~~a~fSS~Gpt~~----~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~ 507 (734)
.-.+.++.|||||-+.. ..||+||||++-|.+|...... .+-..+||||.|+|.|||+++||.
T Consensus 353 dfdD~IA~FSSRGMtTWELP~GYGRmkpDiVtYG~~v~GS~v~-------------~GCr~LSGTSVaSPVVAGav~LLv 419 (1033)
T KOG4266|consen 353 DFDDHIASFSSRGMTTWELPHGYGRMKPDIVTYGRDVMGSKVS-------------TGCRSLSGTSVASPVVAGAVCLLV 419 (1033)
T ss_pred cccchhhhhccCCcceeecCCcccccCCceEeeccccccCccc-------------ccchhccCCcccchhhhceeeeEe
Confidence 12247999999997653 4789999999999999877665 667889999999999999999997
Q ss_pred h----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 508 A----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 508 q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+ +.--++|+.+|.+|+.+|.++.... -+.||+|++|+.++.+
T Consensus 420 S~~~qk~dl~NPASmKQaLiegA~kLpg~N----MfEQGaGkldLL~syq 465 (1033)
T KOG4266|consen 420 SVEAQKKDLLNPASMKQALIEGAAKLPGPN----MFEQGAGKLDLLESYQ 465 (1033)
T ss_pred eeheehhhccCHHHHHHHHHhHHhhCCCCc----hhhccCcchhHHHHHH
Confidence 6 3445799999999999999988753 4789999999998876
|
|
| >KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=329.45 Aligned_cols=356 Identities=23% Similarity=0.270 Sum_probs=234.9
Q ss_pred CCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCC-C--CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 164 EGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSD-G--CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 164 ~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
..|||||||||+|+..+... ..||||+|+|+++++-+.. | .+...+.+|+..++++.+||||||+|-..
T Consensus 310 g~HGTHVAgIa~anhpe~p~--------~NGvAPgaqIvSl~IGD~RLgsMETgtaltRA~~~v~e~~vDiINmSyGE~a 381 (1304)
T KOG1114|consen 310 GPHGTHVAGIAAANHPETPE--------LNGVAPGAQIVSLKIGDGRLGSMETGTALTRAMIEVIEHNVDIINMSYGEDA 381 (1304)
T ss_pred CCCcceehhhhccCCCCCcc--------ccCCCCCCEEEEEEecCccccccccchHHHHHHHHHHHhcCCEEEeccCccC
Confidence 45999999999999865432 3899999999999996542 2 45667899999999999999999999986
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCC---CCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNF---APWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~---ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
..+.....++.+-..+.++|+++|+||||+||...+++.+ ...+|.|||.-.....
T Consensus 382 ~~pn~GRviEl~~e~vnKr~vI~VsSAGN~GPaltTVGaPggtTssvIgVGAYVsp~mm--------------------- 440 (1304)
T KOG1114|consen 382 HLPNSGRVIELLRELVNKRGVIYVSSAGNNGPALTTVGAPGGTTSSVIGVGAYVSPGMM--------------------- 440 (1304)
T ss_pred CCCCcchHHHHHHHHhhhccEEEEEeCCCCCCceeeccCCCCcccceEeeeeecCHHHH---------------------
Confidence 5555556666655445589999999999999998877654 3478888874221000
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 441 -------------------------------------------------------------------------------- 440 (1304)
T KOG1114|consen 441 -------------------------------------------------------------------------------- 440 (1304)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
...... ..+....+..+|||||+. ||-+-..|+|||+.|-+. |...
T Consensus 441 ---------~a~y~~-----------------~e~vp~~~YtWsSRgP~~--DG~lGVsi~APggAiAsV-P~~t----- 486 (1304)
T KOG1114|consen 441 ---------QAEYSV-----------------REPVPSNPYTWSSRGPCL--DGDLGVSISAPGGAIASV-PQYT----- 486 (1304)
T ss_pred ---------Hhhhhh-----------------hccCCCCccccccCCCCc--CCCcceEEecCCccccCC-chhh-----
Confidence 000000 001134688899999999 999999999999998664 2210
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
-..-..|.|||||+|+++|.+|||++ .+-.|||..||.+|++||.+++.. ..+.||.|+|++.+|.+
T Consensus 487 -----lq~~qLMNGTSMsSP~acG~IAllLSgLKa~ni~ytpysVrrAlenTa~~l~~i----d~faqG~GmlqVdkAyE 557 (1304)
T KOG1114|consen 487 -----LQNSQLMNGTSMSSPSACGAIALLLSGLKAQNIPYTPYSVRRALENTATKLGDI----DSFAQGQGMLQVDKAYE 557 (1304)
T ss_pred -----hhhhhhhCCcccCCccccchHHHHHHHHHhcCCCCcHHHHHHHHHhcccccCcc----chhccCcceeehhHHHH
Confidence 14567899999999999999999965 567899999999999999999876 37999999999999976
Q ss_pred CceeccCCchhhhhhhhccCCCcceeEEeccC-CCcccCCCCCCCCCCCCCCceeeeecCCCc--eEEEEEEEEE----e
Q 044427 554 PGLVYDATEVDYVNFLCKQGYNTTIIRQITGD-NSSVCNSTEPGRAWDLNYPSFSLAIEDGQP--IYGVFTRTVT----N 626 (734)
Q Consensus 554 ~~lv~~~~~~d~~~~l~~~~~~~~~~~~~~~~-~~~~c~~~~~~~~~~ln~psi~~~~~~~~~--~~~~~~~tv~----N 626 (734)
|+.- .+.-=+..++.+... .. +|... +...++.. -...+++-|. |
T Consensus 558 -----------yL~q--~~~~f~~~l~f~~v~VgN-~~srG--------------IyLRep~~~~~p~e~~i~VePiF~~ 609 (1304)
T KOG1114|consen 558 -----------YLAQ--SDFSFPNALGFINVNVGN-SCSRG--------------IYLREPTQVCSPSEHTIGVEPIFEN 609 (1304)
T ss_pred -----------HHHH--hhhcCCccceeEEEeecc-ccccc--------------eEecCCcccCCccccceeccccccC
Confidence 2110 000001111111111 01 23211 00000000 0011122111 1
Q ss_pred c-CC--CCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEc-----CceEEEeEEEE
Q 044427 627 V-GS--PNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWED-----GVHQVRSPVVI 698 (734)
Q Consensus 627 ~-~~--~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~ 698 (734)
- .+ +...|.+...-..-..+.--|+.|.+ .++.+.|.|+|+++... .+..++.|.-.| .++.+|||+.|
T Consensus 610 ~~e~~keki~Fe~~L~L~st~pwVq~p~~l~l--~~~~R~i~VrVDpt~l~-~G~hy~eV~gyD~~~p~~gplFrIPVTV 686 (1304)
T KOG1114|consen 610 GEENEKEKISFEVQLSLASTQPWVQCPEYLML--ANQGRGINVRVDPTGLA-PGVHYTEVLGYDTANPSRGPLFRIPVTV 686 (1304)
T ss_pred ccccccccccceeeEeeecCCcceeCchhhee--ccCCceeEEEECCcCCC-CCcceEEEEEeecCCcccCceEEeeeEE
Confidence 0 01 11223322211111112223777777 47789999999999865 557777777654 46789999998
Q ss_pred EecC
Q 044427 699 YNIL 702 (734)
Q Consensus 699 ~~~~ 702 (734)
....
T Consensus 687 i~P~ 690 (1304)
T KOG1114|consen 687 IKPK 690 (1304)
T ss_pred Eccc
Confidence 8654
|
|
| >cd07488 Peptidases_S8_2 Peptidase S8 family domain, uncharacterized subfamily 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=284.33 Aligned_cols=194 Identities=20% Similarity=0.193 Sum_probs=142.5
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHH--HhCCCcEEEEccC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDA--IADGVDIISVSLG 237 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~a--i~~g~dVINlSlG 237 (734)
..|..+|||||||||||. .|++|+++|+..++.. .....+.++++|+ .+.+++|||||||
T Consensus 33 ~~~~~~HGThVAgiiag~---------------~~~~p~a~~~~~~~~~---~~~~~~~~~i~~~~~~~~gv~VINmS~G 94 (247)
T cd07488 33 NNTFDDHATLVASIMGGR---------------DGGLPAVNLYSSAFGI---KSNNGQWQECLEAQQNGNNVKIINHSYG 94 (247)
T ss_pred CCCCCCHHHHHHHHHHhc---------------cCCCCccceehhhhCC---CCCCccHHHHHHHHHhcCCceEEEeCCc
Confidence 457899999999999987 4567999998765521 1233466788888 5679999999999
Q ss_pred CCCCCC-----CCCCHHHHHHHHHHhC-CcEEEEcCCCCCCCCC-----CcCCCCCceEEecccccCceeEEEEEeCCCe
Q 044427 238 SDFPFE-----YFEDPIAIGSFHAMKY-GILTSNSAGNSGPDPY-----SVSNFAPWTLTVAASSIDRKFVAQAVLGNGI 306 (734)
Q Consensus 238 ~~~~~~-----~~~~~~~~a~~~a~~~-Gi~vV~AAGN~G~~~~-----~~~~~ap~vitVga~~~~~~~~~~~~~~~g~ 306 (734)
...... ...+.+..+++.+.++ |+++|+||||+|.... ..+..++++|+|||.+....
T Consensus 95 ~~~~~~~~~~~~~~~~l~~aid~~a~~~GvlvV~AAGN~g~~~~~~~~i~~pa~~~nvItVGA~d~~g~----------- 163 (247)
T cd07488 95 EGLKRDPRAVLYGYALLSLYLDWLSRNYEVINVFSAGNQGKEKEKFGGISIPTLAYNSIVVGSTDRNGD----------- 163 (247)
T ss_pred cCCCCCccccccccchHHHHHHHHHhhCCEEEEEecCCCCCCccCCCCcCCccccCCeEEEEEecCCCC-----------
Confidence 874332 1234566677776655 9999999999997532 22344678899998653310
Q ss_pred EeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCC
Q 044427 307 TYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSV 386 (734)
Q Consensus 307 ~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~ 386 (734)
T Consensus 164 -------------------------------------------------------------------------------- 163 (247)
T cd07488 164 -------------------------------------------------------------------------------- 163 (247)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCC--CCCCCCCCCCCCcEEecCCCE
Q 044427 387 FTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSR--GPNPITVDILKPDITAPGVDI 464 (734)
Q Consensus 387 ~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~--Gpt~~~~~~~KPDI~APG~~I 464 (734)
.-..+.||++ +|+. ++..||||+|||++|
T Consensus 164 -----------------------------------------------~~~~s~~sn~~~~~~~--~~~~~~di~APG~~i 194 (247)
T cd07488 164 -----------------------------------------------RFFASDVSNAGSEINS--YGRRKVLIVAPGSNY 194 (247)
T ss_pred -----------------------------------------------cceecccccccCCCCC--CCCceeEEEEeeeeE
Confidence 0023445554 4544 788999999999999
Q ss_pred eeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCC------HHHHHHHHHhcc
Q 044427 465 LASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWS------PSSIKSALMTTA 526 (734)
Q Consensus 465 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls------~~~vk~~L~~TA 526 (734)
++ +. +.|..++|||||||||||++|||++++|++. -.++|.+|++|+
T Consensus 195 ~s--~~-------------~~~~~~sGTSmAaP~VaG~aAlll~~~p~~~~~~~~~~~~~~~~~~~~~ 247 (247)
T cd07488 195 NL--PD-------------GKDDFVSGTSFSAPLVTGIIALLLEFYDRQYKKGNNNLIALRALVSSSV 247 (247)
T ss_pred EC--CC-------------CceeeecccchHHHHHHHHHHHHHHHChhhhhCcchhHHHHHHHHhccC
Confidence 98 32 5688999999999999999999999988765 446777777653
|
This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. |
| >cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=268.07 Aligned_cols=234 Identities=31% Similarity=0.416 Sum_probs=176.5
Q ss_pred CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhcc
Q 044427 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAG 176 (734)
Q Consensus 97 V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG 176 (734)
|+|+|||+|++++||+|..... . .....++.... .......+..+||||||++|++
T Consensus 1 v~VaiiD~G~~~~~~~~~~~~~---------~-----------~~~~~~~~~~~----~~~~~~~~~~~HGt~va~~i~~ 56 (241)
T cd00306 1 VTVAVIDTGVDPDHPDLDGLFG---------G-----------GDGGNDDDDNE----NGPTDPDDGNGHGTHVAGIIAA 56 (241)
T ss_pred CEEEEEeCCCCCCCcchhcccc---------C-----------cccccccccCc----CCCCCCCCCCCcHHHHHHHHhc
Confidence 6899999999999998721100 0 00001111110 0002445678999999999999
Q ss_pred CCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHH-hCCCcEEEEccCCCCCCCCCCCHHHHHHH
Q 044427 177 REVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAI-ADGVDIISVSLGSDFPFEYFEDPIAIGSF 254 (734)
Q Consensus 177 ~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai-~~g~dVINlSlG~~~~~~~~~~~~~~a~~ 254 (734)
...... ..|+||+++|+.+|+....+ .....+++++++++ ..+++|||||||..... ....+...+.
T Consensus 57 ~~~~~~---------~~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~--~~~~~~~~~~ 125 (241)
T cd00306 57 SANNGG---------GVGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP--PSSALSEAID 125 (241)
T ss_pred CCCCCC---------CEEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC--CCHHHHHHHH
Confidence 864321 17999999999999987765 66788999999999 89999999999998422 4556777777
Q ss_pred HHHhC-CcEEEEcCCCCCCCCC---CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCC
Q 044427 255 HAMKY-GILTSNSAGNSGPDPY---SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGD 330 (734)
Q Consensus 255 ~a~~~-Gi~vV~AAGN~G~~~~---~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~ 330 (734)
++..+ |+++|+|+||.+.... ..+...+++|+||+.+...
T Consensus 126 ~~~~~~~~i~V~aaGN~~~~~~~~~~~p~~~~~vi~Vga~~~~~------------------------------------ 169 (241)
T cd00306 126 YALAKLGVLVVAAAGNDGPDGGTNIGYPAASPNVIAVGAVDRDG------------------------------------ 169 (241)
T ss_pred HHHHhcCeEEEEecCCCCCCCCCCccCCccCCceEEEEecCcCC------------------------------------
Confidence 88877 9999999999998775 4666789999999865431
Q ss_pred CcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHH
Q 044427 331 AANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 331 ~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~ 410 (734)
T Consensus 170 -------------------------------------------------------------------------------- 169 (241)
T cd00306 170 -------------------------------------------------------------------------------- 169 (241)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhcCCCcEEEEEecceeecCCCCcee-eccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEe
Q 044427 411 DYIRSTEYPIATIMFGETWKDAMAPKVV-SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNII 489 (734)
Q Consensus 411 ~~~~~~~~~~~~i~~~~~~~~~~~~~~a-~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~ 489 (734)
... .++++| .|||+.|||.++...... ....+..+
T Consensus 170 -------------------------~~~~~~~~~~--------~~~~~~apg~~~~~~~~~-----------~~~~~~~~ 205 (241)
T cd00306 170 -------------------------TPASPSSNGG--------AGVDIAAPGGDILSSPTT-----------GGGGYATL 205 (241)
T ss_pred -------------------------CccCCcCCCC--------CCceEEeCcCCccCcccC-----------CCCCeEee
Confidence 111 233444 367999999998875111 13789999
Q ss_pred ccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhc
Q 044427 490 SGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTT 525 (734)
Q Consensus 490 sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~T 525 (734)
+|||||||+|||++||++|++|++++.++|++|+.|
T Consensus 206 ~GTS~Aap~vaG~~Al~~~~~~~~~~~~~~~~l~~t 241 (241)
T cd00306 206 SGTSMAAPIVAGVAALLLSANPDLTPAQVKAALLST 241 (241)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhhC
Confidence 999999999999999999999999999999999875
|
Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav |
| >COG1404 AprE Subtilisin-like serine proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-23 Score=238.10 Aligned_cols=267 Identities=27% Similarity=0.388 Sum_probs=194.9
Q ss_pred CccC--CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC-CCCCC
Q 044427 87 GKLS--SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH-SPRDS 163 (734)
Q Consensus 87 ~~~~--~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~-~~~D~ 163 (734)
.|.. +.+|+|++|+|||+||+..||+|.+... ..++|.+... . ...|.
T Consensus 132 ~~~~~~~~~g~gv~~~vid~gv~~~~~~~~~~~~-----------------------~~~~~~~~~~------~~~~~d~ 182 (508)
T COG1404 132 LVANGAGLTGKGVTVAVIDTGVDASHPDLAGSAV-----------------------AGGDFVDGDP------EPPFLDD 182 (508)
T ss_pred ccccccCCCCCCeEEEEeccCCCCCChhhhcccc-----------------------cccccccCCC------CCCCCCC
Confidence 4444 8999999999999999999999975421 0123333221 1 24688
Q ss_pred CCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCC-C-CCHHHHHHHHHHHHhCC--CcEEEEccCCC
Q 044427 164 EGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSD-G-CATADILAAFDDAIADG--VDIISVSLGSD 239 (734)
Q Consensus 164 ~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~-g-~~~~~i~~ai~~ai~~g--~dVINlSlG~~ 239 (734)
.+|||||++++++....+ .....|+||+++++.+|++... + ....+++++|+++++.+ +++||||+|..
T Consensus 183 ~~hGt~vag~ia~~~~~~-------~~~~~g~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~in~s~g~~ 255 (508)
T COG1404 183 NGHGTHVAGTIAAVIFDN-------GAGVAGVAPGAKLLLVKVLGSGGGSGELSDVAEGIEGAANLGGPADVINLSLGGS 255 (508)
T ss_pred CCCcceeeeeeeeecccC-------CCccccccCCCcEEEEEeccCCCCcccHHHHHHHHHHHHhcCCCCcEEEecCCCC
Confidence 999999999999843111 1123899999999999999875 5 66777899999999999 99999999986
Q ss_pred CCCCCCCCHHHHHHHHHHhCC-cEEEEcCCCCCCCCCC----cCCCC--CceEEecccccCceeEEEEEeCCCeEeeeee
Q 044427 240 FPFEYFEDPIAIGSFHAMKYG-ILTSNSAGNSGPDPYS----VSNFA--PWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~G-i~vV~AAGN~G~~~~~----~~~~a--p~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (734)
........+..++..+...| +++|+++||.+..... .+... +.+++|++.+.
T Consensus 256 -~~~~~~~~~~~a~~~~~~~g~v~~v~aagn~~~~~~~~~~~~p~~~~~~~~i~v~a~~~-------------------- 314 (508)
T COG1404 256 -LSDSASPALGDALAAAANAGGVVIVAAAGNDGSNASGGDLAYPASYPAPNVIAVGALDL-------------------- 314 (508)
T ss_pred -ccccccHHHHHHHHHHHHcCCEEEEEecccCCCCCccccccCCcccCCCceEEEecCCC--------------------
Confidence 23334455666777777777 9999999999876521 11111 23344443211
Q ss_pred cccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCccc
Q 044427 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAF 392 (734)
Q Consensus 313 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 392 (734)
T Consensus 315 -------------------------------------------------------------------------------- 314 (508)
T COG1404 315 -------------------------------------------------------------------------------- 314 (508)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEee-----c
Q 044427 393 SYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILA-----S 467 (734)
Q Consensus 393 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~s-----a 467 (734)
.+.++.||++|+.. ..++.|||.+|.+ .
T Consensus 315 -----------------------------------------~~~~~~~s~~g~~~------~~~~~apg~~i~~~~~~~~ 347 (508)
T COG1404 315 -----------------------------------------SDTVASFSNDGSPT------GVDIAAPGVNILSLSAVNT 347 (508)
T ss_pred -----------------------------------------CCccccccccCCCC------CcceeCCCcccccccccee
Confidence 13678899999751 2399999999988 4
Q ss_pred cCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC-CCCHHHHHHHHHhcccc--ccCCCcccCCCCCCCC
Q 044427 468 WSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP-NWSPSSIKSALMTTAYV--MDSRKQEDLEFAYGSG 544 (734)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~vk~~L~~TA~~--~~~~~~~~~~~~~G~G 544 (734)
+++. ...|..++||||++|||+|++||+++.+| .+++.+++..+..++.. ... ....++.|
T Consensus 348 ~~~~-----------~~~~~~~~Gts~a~p~v~g~aal~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 411 (508)
T COG1404 348 LPGD-----------GADYVTLSGTSMAAPHVSGVAALVLSANPNELTPAQVRNLIVTTAGLTPLSG-----VDNLVGGG 411 (508)
T ss_pred eeCC-----------ccceEeeccccccccHHHHHHHHHHccCcccCCHHHHHHHHhhccccccCCc-----cccccccC
Confidence 4431 02499999999999999999999999999 89999999999988874 222 25667777
Q ss_pred ccCccccCC
Q 044427 545 HINPAQAID 553 (734)
Q Consensus 545 ~vn~~~Al~ 553 (734)
..+...+..
T Consensus 412 ~~~~~~~~~ 420 (508)
T COG1404 412 LANLDAAAT 420 (508)
T ss_pred ccccccccc
Confidence 666655544
|
|
| >KOG3526 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.5e-19 Score=181.55 Aligned_cols=153 Identities=14% Similarity=0.149 Sum_probs=100.5
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCC--CC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRD--SE 164 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D--~~ 164 (734)
+|..|++|++|+++|+|.||||.||++..+ ..--..++|..++ |.+++.-.| .+
T Consensus 153 awa~g~tgknvttaimddgvdymhpdlk~n---------------------ynaeasydfssnd---pfpyprytddwfn 208 (629)
T KOG3526|consen 153 AWALGYTGKNVTTAIMDDGVDYMHPDLKSN---------------------YNAEASYDFSSND---PFPYPRYTDDWFN 208 (629)
T ss_pred HHhhcccCCCceEEeecCCchhcCcchhcc---------------------cCceeecccccCC---CCCCCcccchhhh
Confidence 689999999999999999999999999722 2223345555442 111111112 57
Q ss_pred CChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCCC
Q 044427 165 GHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDFPFE 243 (734)
Q Consensus 165 gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~~~~ 243 (734)
.|||.|||-+++...++ ..| .|||.+.++..+|+++. -+..|+++|-..--+ ..++|-+-|||......
T Consensus 209 shgtrcagev~aardng--icg------vgvaydskvagirmldq--pymtdlieansmghep~kihiysaswgptddgk 278 (629)
T KOG3526|consen 209 SHGTRCAGEVVAARDNG--ICG------VGVAYDSKVAGIRMLDQ--PYMTDLIEANSMGHEPSKIHIYSASWGPTDDGK 278 (629)
T ss_pred ccCccccceeeeeccCC--cee------eeeeeccccceeeecCC--chhhhhhhhcccCCCCceEEEEecccCcCCCCc
Confidence 89999999888776543 233 69999999999999863 445566554322111 34789999999875333
Q ss_pred CCCCH---HHHHHHHHH-----hCCcEEEEcCCCCCCC
Q 044427 244 YFEDP---IAIGSFHAM-----KYGILTSNSAGNSGPD 273 (734)
Q Consensus 244 ~~~~~---~~~a~~~a~-----~~Gi~vV~AAGN~G~~ 273 (734)
..+.+ ..+++.+-+ ..|-++|.|.|..|..
T Consensus 279 tvdgprnatmraiv~gvnegrnglgsiyvwasgdgge~ 316 (629)
T KOG3526|consen 279 TVDGPRNATMRAIVRGVNEGRNGLGSIYVWASGDGGED 316 (629)
T ss_pred ccCCchhHHHHHHHHhhhcccCCcccEEEEecCCCCCc
Confidence 33333 222332323 2467899999988754
|
|
| >cd04056 Peptidases_S53 Peptidase domain in the S53 family | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.6e-16 Score=173.60 Aligned_cols=102 Identities=24% Similarity=0.233 Sum_probs=80.0
Q ss_pred cceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhC---CCcEEEEccCCCCCCC--CCCCHHHHHHHHHHhCCcEEE
Q 044427 190 GTARGGVPNARISMYKVCWSDGCATADILAAFDDAIAD---GVDIISVSLGSDFPFE--YFEDPIAIGSFHAMKYGILTS 264 (734)
Q Consensus 190 g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~---g~dVINlSlG~~~~~~--~~~~~~~~a~~~a~~~Gi~vV 264 (734)
..+.||||+|+|+.|++++.. ..+++.++.+++.+ +++|||+|||...... .+...+..++.+|..+||+||
T Consensus 81 ~~~~gvAP~a~i~~~~~~~~~---~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~~~~~~~~~~~~~~~a~~~Gitvv 157 (361)
T cd04056 81 EYAGAIAPGANITLYFAPGTV---TNGPLLAFLAAVLDNPNLPSVISISYGEPEQSLPPAYAQRVCNLFAQAAAQGITVL 157 (361)
T ss_pred HHHHhccCCCeEEEEEECCcC---ccHHHHHHHHHHHcCCCCCCEEEccCCccccccCHHHHHHHHHHHHHHHhCCeEEE
Confidence 345899999999999997542 45678888888887 9999999999873210 123456777778889999999
Q ss_pred EcCCCCCCCCC-----------CcCCCCCceEEecccccCc
Q 044427 265 NSAGNSGPDPY-----------SVSNFAPWTLTVAASSIDR 294 (734)
Q Consensus 265 ~AAGN~G~~~~-----------~~~~~ap~vitVga~~~~~ 294 (734)
+|+||+|.... ..+...|++++||+++...
T Consensus 158 aAsGd~G~~~~~~~~~~~~~~~~~Pas~P~V~sVGgt~~~~ 198 (361)
T cd04056 158 AASGDSGAGGCGGDGSGTGFSVSFPASSPYVTAVGGTTLYT 198 (361)
T ss_pred EeCCCCCCCCCCCCCCCCcccCCCCCCCCceeeeecccccC
Confidence 99999997653 2356689999999987653
|
Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin- |
| >cd02133 PA_C5a_like PA_C5a_like: Protease-associated domain containing proteins like Streptococcus pyogenes C5a peptidase | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.8e-09 Score=99.29 Aligned_cols=110 Identities=25% Similarity=0.349 Sum_probs=84.3
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc---
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL--- 390 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~--- 390 (734)
.....++++.+. |....+...+++|||+||+|+.+ ..+++++||.|+|++|+.....
T Consensus 24 ~~~~~~lv~~g~---------------g~~~d~~~~dv~GkIvL~~rg~c~~~~K~~~a~~aGA~gvIi~n~~~~~~~~~ 88 (143)
T cd02133 24 LGKTYELVDAGL---------------GTPEDFEGKDVKGKIALIQRGEITFVEKIANAKAAGAVGVIIYNNVDGLIPGT 88 (143)
T ss_pred CCcEEEEEEccC---------------CchhccCCCCccceEEEEECCCCCHHHHHHHHHHCCCeEEEEeecCCCccccc
Confidence 345778888654 44445556789999999998875 6788999999999999876533
Q ss_pred -ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCC
Q 044427 391 -AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNP 447 (734)
Q Consensus 391 -~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~ 447 (734)
.....+|++.|+.++|..|++++.+ ++++.+..+....+.+.++.||||||+.
T Consensus 89 ~~~~~~iP~v~Is~~dG~~L~~~l~~----~~~i~~~~~~~~~~~p~va~fSsrgp~g 142 (143)
T cd02133 89 LGEAVFIPVVFISKEDGEALKAALES----SKKLTFNTKKEKATNPDLADFSSRGPWG 142 (143)
T ss_pred CCCCCeEeEEEecHHHHHHHHHHHhC----CCeEEEEeccccccCCccccccCcCCCC
Confidence 1134689999999999999999987 4555555544455667899999999973
|
This group contains various PA domain-containing proteins similar to S. pyogenes C5a, including, i) Vpr, a minor extracellular serine protease from Bacillus subtilis, ii) a large molecular mass collagenolytic protease from Geobacillus collagenovorans MO-1, and iii) PrtS, a cell envelope protease from Streptococcus thermophilus CNRZ 385. Proteins in this group belong to the peptidase S8 family. C5a peptidase is a cell surface serine protease which specifically inactivates C5a [a chemotactic peptide, which attracts polymorphonuclear leukocytes (PMNs)], by cleaving it to release a 7-residue carboxy-terminal fragment which contains the PMN binding site. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promotin |
| >cd02120 PA_subtilisin_like PA_subtilisin_like: Protease-associated domain containing subtilisin-like proteases | Back alignment and domain information |
|---|
Probab=98.91 E-value=7.5e-09 Score=95.79 Aligned_cols=115 Identities=37% Similarity=0.562 Sum_probs=89.6
Q ss_pred EEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc------chhhh
Q 044427 300 AVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD------GSDIL 373 (734)
Q Consensus 300 ~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~------~~~~~ 373 (734)
++++||+.+.|++++.... ..+++++..... .......|.+..++..+++||||+|+|+.+ ..+++
T Consensus 2 i~LGng~~i~G~sl~~~~~--~~~~~~~~~~~~------~~~~~~~C~~~~~~~~~v~GkIVlc~~~~~~~~~~k~~~~~ 73 (126)
T cd02120 2 VTLGNGKTIVGQSLYPGNL--KTYPLVYKSANS------GDVDASLCLPGSLDPSKVKGKIVLCDRGGNTSRVAKGDAVK 73 (126)
T ss_pred EEeCCCCEEEEEEccCCCC--CccceEeccCcC------CCCccccCCCCCCChhhccccEEEEeCCCCccHHHHHHHHH
Confidence 6789999999999997554 456777633211 123347899888888899999999998764 56789
Q ss_pred ccCceEEEEecCCccCc---ccCcCcceEEeeccchHHHHHHHhcCCCcEEE
Q 044427 374 AVNGLGTIMADSVFTDL---AFSYPLPATLISKENGQDILDYIRSTEYPIAT 422 (734)
Q Consensus 374 ~~Ga~g~i~~n~~~~~~---~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~ 422 (734)
++||.|+|++++..... .....+|++.|+.+++..|++|++++..++++
T Consensus 74 ~~GA~gvI~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~l~~y~~~~~~~~~~ 125 (126)
T cd02120 74 AAGGAGMILANDPTDGLDVVADAHVLPAVHVDYEDGTAILSYINSTSNPTAT 125 (126)
T ss_pred HcCCcEEEEEecCCCCceecccccccceEEECHHHHHHHHHHHHcCCCccee
Confidence 99999999999876443 23468999999999999999999988766554
|
This group contains various PA domain-containing subtilisin-like proteases including melon cucumisin, Arabidopsis thaliana Ara12, a nodule specific serine protease from Alnus glutinosa ag12, members of the tomato P69 family, and tomato LeSBT2. These proteins belong to the peptidase S8 family. Cucumisin from the juice of melon fruits is a thermostable serine peptidase, with a broad substrate specificity for oligopeptides and proteins. A. thaliana Ara12 is a thermostable, extracellular serine protease, found chiefly in silique tissue and stem tissue. Ara12 is stimulated by Ca2+ ions. A. glutinosa ag12 is expressed at high levels in the nodules, and at low levels in the shoot tips; it is implicated in both symbiotic and non-symbiotic processes in plant development. The tomato P69 protease family is comprised of various protein isoforms of approximately 69KDa. These isoforms accu |
| >PF06280 DUF1034: Fn3-like domain (DUF1034); InterPro: IPR010435 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.9e-07 Score=84.52 Aligned_cols=80 Identities=25% Similarity=0.385 Sum_probs=57.4
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeC--------CCce-----------EEEEEcCeeEEeeCCcEEEEEEEEEcccc---C
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYM--------PASV-----------SVDVEPQSLSFSAVGEQKSFTVKVTGPKI---A 674 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~--------~~g~-----------~v~v~p~~~~~~~~g~~~~~~vt~~~~~~---~ 674 (734)
..+++++|+|.|+++.+|+++... ..|. .+...+.+|++ ++|++++|+|+++++.. .
T Consensus 9 ~~~~~itl~N~~~~~~ty~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~vTV-~ag~s~~v~vti~~p~~~~~~ 87 (112)
T PF06280_consen 9 KFSFTITLHNYGDKPVTYTLSHVPVLTDKTDTEEGYSILVPPVPSISTVSFSPDTVTV-PAGQSKTVTVTITPPSGLDAS 87 (112)
T ss_dssp EEEEEEEEEE-SSS-EEEEEEEE-EEEEEE--ETTEEEEEEEE----EEE---EEEEE--TTEEEEEEEEEE--GGGHHT
T ss_pred ceEEEEEEEECCCCCEEEEEeeEEEEeeEeeccCCcccccccccceeeEEeCCCeEEE-CCCCEEEEEEEEEehhcCCcc
Confidence 588999999999999999997651 1111 56777889999 68999999999999652 3
Q ss_pred CCCceEEEEEEEc-Cc-eEEEeEEE
Q 044427 675 QQPIMSGAIVWED-GV-HQVRSPVV 697 (734)
Q Consensus 675 ~~~~~~G~i~~~~-~~-~~v~~P~~ 697 (734)
...+++|||.|++ .. ..+++||+
T Consensus 88 ~~~~~eG~I~~~~~~~~~~lsIPy~ 112 (112)
T PF06280_consen 88 NGPFYEGFITFKSSDGEPDLSIPYM 112 (112)
T ss_dssp T-EEEEEEEEEESSTTSEEEEEEEE
T ss_pred cCCEEEEEEEEEcCCCCEEEEeeeC
Confidence 4789999999996 34 48999996
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain of unknown function is present in bacterial and plant peptidases belonging to MEROPS peptidase family S8 (subfamily S8A subtilisin, clan SB). It is C-terminal to and adjacent to the S8 peptidase domain and can be found in conjunction with the PA (Protease associated) domain (IPR003137 from INTERPRO) and additionally in Gram-positive bacteria with the surface protein anchor domain (IPR001899 from INTERPRO).; GO: 0004252 serine-type endopeptidase activity, 0005618 cell wall, 0016020 membrane; PDB: 3EIF_A 1XF1_B. |
| >PF05922 Inhibitor_I9: Peptidase inhibitor I9; InterPro: IPR010259 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.9e-07 Score=75.84 Aligned_cols=64 Identities=38% Similarity=0.650 Sum_probs=49.1
Q ss_pred chhhHHHHHHHHhCCc----cccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccccc
Q 044427 11 VASTHHSMLQNVLGST----LSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIH 74 (734)
Q Consensus 11 ~~~~~~~~~~~~~~~~----~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~ 74 (734)
..+.|.+++.+++.+. .....++.++|+..||||+++++++++++|+++|+|++|+|++.++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~Gfs~~l~~~~i~~L~~~p~V~~Ve~D~~v~l~ 82 (82)
T PF05922_consen 15 SFSSHKSWQASILKSALKSASSINAKVLYSYDNAFNGFSAKLSEEEIEKLRKDPGVKSVEPDQVVSLH 82 (82)
T ss_dssp HHHHHHHHHH----HHHHTH-TTT-EEEEEESSTSSEEEEEE-HHHHHHHHTSTTEEEEEEECEEEE-
T ss_pred hHHHHHHHHHHHHhhhhhhhcccCCceEEEEeeeEEEEEEEeCHHHHHHHHcCCCeEEEEeCceEecC
Confidence 3667777777654421 356889999999899999999999999999999999999999988764
|
In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. Limited proteolysis of most large protein precursors is carried out in vivo by the subtilisin-like pro-protein convertases. Many important biological processes such as peptide hormone synthesis, viral protein processing and receptor maturation involve proteolytic processing by these enzymes []. The subtilisin-serine protease (SRSP) family hormone and pro-protein convertases (furin, PC1/3, PC2, PC4, PACE4, PC5/6, and PC7/7/LPC) act within the secretory pathway to cleave polypeptide precursors at specific basic sites, generating their biologically active forms. Serum proteins, pro-hormones, receptors, zymogens, viral surface glycoproteins, bacterial toxins, amongst others, are activated by this route []. The SRSPs share the same domain structure, including a signal peptide, the pro-peptide, the catalytic domain, the P/middle or homo B domain, and the C terminus. Proteinase propeptide inhibitors (sometimes refered to as activation peptides) are responsible for the modulation of folding and activity of the pro-enzyme or zymogen. The pro-segment docks into the enzyme moiety shielding the substrate binding site, thereby promoting inhibition of the enzyme. Several such propeptides share a similar topology [], despite often low sequence identities []. The propeptide region has an open-sandwich antiparallel-alpha/antiparallel-beta fold, with two alpha-helices and four beta-strands with a (beta/alpha/beta)x2 topology. This group of sequences contain the propeptide domain at the N terminus of peptidases belonging to MEROPS family S8A, subtilisins. A number of the members of this group of sequences belong to MEROPS inhibitor family I9, clan I-. The propeptide is removed by proteolytic cleavage; removal activating the enzyme.; GO: 0004252 serine-type endopeptidase activity, 0042802 identical protein binding, 0043086 negative regulation of catalytic activity; PDB: 3CNQ_P 1SPB_P 3CO0_P 1ITP_A 1V5I_B 1SCJ_B 3P5B_P 2XTJ_P 2W2M_P 2P4E_P .... |
| >KOG3525 consensus Subtilisin-like proprotein convertase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.7e-06 Score=94.33 Aligned_cols=160 Identities=17% Similarity=0.134 Sum_probs=99.7
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+.+...|..+++|+++.|+|.|+|++..||+.... ....+..++..... .+.+-.+..
T Consensus 20 ~~v~~~~~~~~~g~~~~~~i~ddgl~~~h~~~~~~---------------------~~~~~s~d~~~~~~-~p~~~~~~~ 77 (431)
T KOG3525|consen 20 LNVQNAWCKGYTGTRVSVTILDDGLECSHPDLRNN---------------------YDPLGSYDVNRHDN-DPEPRCDGT 77 (431)
T ss_pred ceeeeccccCCCCCceEEEEeeccccccCcccccc---------------------cCcceeEeeecCCC-CcccccCCC
Confidence 34455788999999999999999999999999732 11223333333221 111112222
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~ 240 (734)
....|||-|++-.+....... -..|+++++++..++++.. ...+...+...... .-+++-..|||...
T Consensus 78 ~~~~~g~~Ca~~~a~~~~~~~--------C~vg~~~~~~~~g~~~l~~---~v~~~~~~~~~~~~~~~~di~scsw~pdd 146 (431)
T KOG3525|consen 78 NENKHGTRCAGCVAARANNLT--------CGVGVAYNATIGGIRMLAG---CVSDAVEAPSLGFGPCHIDIYSCSWGPDD 146 (431)
T ss_pred CccccCCCCCcccccccCCCc--------CCCCcccCccccceeeeee---ecccceecccccCCCCCceeecCcCCccc
Confidence 357899999999998862211 2279999999999998653 11122333322222 34789999999875
Q ss_pred CCCCCCC---HHHHHHHHH-----HhCCcEEEEcCCCCCCCC
Q 044427 241 PFEYFED---PIAIGSFHA-----MKYGILTSNSAGNSGPDP 274 (734)
Q Consensus 241 ~~~~~~~---~~~~a~~~a-----~~~Gi~vV~AAGN~G~~~ 274 (734)
....... ....+...+ ..+|-+.|+|.||.|...
T Consensus 147 d~~t~~~~~~l~~~~~~~~~~~g~~~~gs~~v~as~ngg~~~ 188 (431)
T KOG3525|consen 147 DGKTCDGPGTLAREALVYGRGCGRHGKGSIFVWASGNGGTCG 188 (431)
T ss_pred CCCcCCCCcchhhhhhhccccccccCCCCeeEEEecCccccc
Confidence 3222222 222233322 356889999999987654
|
|
| >COG4934 Predicted protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.7e-06 Score=98.06 Aligned_cols=96 Identities=17% Similarity=0.173 Sum_probs=57.5
Q ss_pred ceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCC-cEEEEccCCCC--CCCC--CCCHHHHHHHHHHhCCcEEEE
Q 044427 191 TARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGV-DIISVSLGSDF--PFEY--FEDPIAIGSFHAMKYGILTSN 265 (734)
Q Consensus 191 ~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~-dVINlSlG~~~--~~~~--~~~~~~~a~~~a~~~Gi~vV~ 265 (734)
...-+||+|+|..+-+ +.+ ....+..|+.+....-+ -+|-.||+... ..+. .-+.+......|.++|+.+++
T Consensus 287 ~s~A~AP~A~I~lvva--p~~-~~~a~dna~n~~~~~~~s~~ip~S~s~~~~~~~~~~~~~~~~d~l~~qasaeGITi~A 363 (1174)
T COG4934 287 WSHAMAPKANIDLVVA--PNP-LVSALDNAYNEVLYYMVSFVIPISWSYAEFQGPISPGYADLMDLLYEQASAEGITIFA 363 (1174)
T ss_pred hhhccCccCceEEEEc--CCC-ceehhhHHHHHHHHhhhcccccchhHHHHhccCCChHHHHHHHHHHHHhhccceEEEE
Confidence 3467899999998866 222 22222233333222211 23335665431 1222 233445555577899999999
Q ss_pred cCCCCCCCCCC--------cCCCCCceEEecc
Q 044427 266 SAGNSGPDPYS--------VSNFAPWTLTVAA 289 (734)
Q Consensus 266 AAGN~G~~~~~--------~~~~ap~vitVga 289 (734)
|+|.+|....+ .+..+|++++||.
T Consensus 364 ASGD~Gay~~~~~~~~sv~~PasSPYVtsVGG 395 (1174)
T COG4934 364 ASGDSGAYDDTPTPYLSVNFPASSPYVTSVGG 395 (1174)
T ss_pred ecccccccCCCcccceeecccCCCccEEeecC
Confidence 99999876643 3456899999998
|
|
| >cd04816 PA_SaNapH_like PA_SaNapH_like: Protease-associated domain containing proteins like Streptomyces anulatus N-acetylpuromycin N-acetylhydrolase (SaNapH) | Back alignment and domain information |
|---|
Probab=98.18 E-value=4.4e-06 Score=76.78 Aligned_cols=79 Identities=18% Similarity=0.177 Sum_probs=65.3
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc------c--cCcCcceEEeeccchHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL------A--FSYPLPATLISKENGQDI 409 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~------~--~~~~~p~~~i~~~~~~~l 409 (734)
...|.+..+...+++|||+||.|+.+ ..+++++||.++|++|+..... . ....+|.++|+.++|+.|
T Consensus 29 ~~gC~~~~~~~~~~~GkIvLv~rg~c~f~~K~~~A~~aGA~avIi~n~~~~~~~~~~~~~~~~~~~iP~~~Is~~~G~~l 108 (122)
T cd04816 29 PAGCDASDYDGLDVKGAIVLVDRGGCPFADKQKVAAARGAVAVIVVNNSDGGGTAGTLGAPNIDLKVPVGVITKAAGAAL 108 (122)
T ss_pred ccCCCccccCCCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEeCCCCccccccccCCCCCCeeeEEEEcHHHHHHH
Confidence 46799888888899999999999875 6789999999999999876321 1 345699999999999999
Q ss_pred HHHHhcCCCcEE
Q 044427 410 LDYIRSTEYPIA 421 (734)
Q Consensus 410 ~~~~~~~~~~~~ 421 (734)
++++.++.+.++
T Consensus 109 ~~~l~~g~~v~~ 120 (122)
T cd04816 109 RRRLGAGETLEL 120 (122)
T ss_pred HHHHcCCCEEEE
Confidence 999988765444
|
This group contains various PA domain-containing proteins similar SaNapH. Proteins in this group belong to the peptidase M28 family. NapH is a terminal enzyme in the puromycin biosynthetic pathway; NapH hydrolyzes N-acetylpuromycin to the active antibiotic. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >PF02225 PA: PA domain; InterPro: IPR003137 The PA (Protease associated) domain is found as an insert domain in diverse proteases, which include the MEROPS peptidase families A22B, M28, and S8A [] | Back alignment and domain information |
|---|
Probab=97.99 E-value=8.3e-06 Score=72.07 Aligned_cols=71 Identities=25% Similarity=0.343 Sum_probs=57.2
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCcc-------CcccCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFT-------DLAFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~-------~~~~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+......+++||||||.|+.+ ..+++++||.|+|++|.... .......||+++|+.++++.|+
T Consensus 19 ~~~~~~~~~~~~~~~gkIvlv~rg~~~~~~k~~~a~~~GA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~I~~~~g~~L~ 98 (101)
T PF02225_consen 19 EGDCCPSDYNGSDVKGKIVLVERGSCSFDDKVRNAQKAGAKGVIIYNPPPNNGSMIDSEDPDPIDIPVVFISYEDGEALL 98 (101)
T ss_dssp CCHHHHHHTSTSTCTTSEEEEESTSSCHHHHHHHHHHTTESEEEEE-TSCSCTTTTCEBTTTSTBSEEEEE-HHHHHHHH
T ss_pred cccccccccCCccccceEEEEecCCCCHHHHHHHHHHcCCEEEEEEeCCccccCcccccCCCCcEEEEEEeCHHHHhhhh
Confidence 45677888889999999999999875 78999999999999992211 1145778999999999999999
Q ss_pred HHH
Q 044427 411 DYI 413 (734)
Q Consensus 411 ~~~ 413 (734)
+|+
T Consensus 99 ~~i 101 (101)
T PF02225_consen 99 AYI 101 (101)
T ss_dssp HHH
T ss_pred ccC
Confidence 985
|
The PA domain is also found in a plant vacuolar sorting receptor O22925 from SWISSPROT and members of the RZF family, e.g. O43567 from SWISSPROT.; PDB: 3EIF_A 1XF1_B 3BXM_A 2C6P_A 1Z8L_C 3SJF_A 3BHX_A 2C6G_A 3D7F_A 2XEG_A .... |
| >cd02122 PA_GRAIL_like PA _GRAIL_like: Protease-associated (PA) domain GRAIL-like | Back alignment and domain information |
|---|
Probab=97.95 E-value=3e-05 Score=72.57 Aligned_cols=80 Identities=13% Similarity=0.007 Sum_probs=65.9
Q ss_pred ccccccccC--CCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCc-c--Cc----ccCcCcceEEeeccchHH
Q 044427 343 ARFCAADAL--NSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVF-T--DL----AFSYPLPATLISKENGQD 408 (734)
Q Consensus 343 ~~~c~~~~~--~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~-~--~~----~~~~~~p~~~i~~~~~~~ 408 (734)
...|.+... ...++.|+|+|+.|+.| ..+++++||.++|++|+.. . .+ .....+|.++|+..+|+.
T Consensus 44 ~~gC~~~~~~~~~~~~~g~IaLV~RG~C~F~~K~~nA~~aGA~aVIIyn~~~~~~~~~~m~~~~~~~ip~v~Is~~~G~~ 123 (138)
T cd02122 44 HYGCDPDTRFPIPPNGEPWIALIQRGNCTFEEKIKLAAERNASAVVIYNNPGTGNETVKMSHPGTGDIVAIMITNPKGME 123 (138)
T ss_pred cCCCCCCccccCCccCCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCCCceeeccCCCCCcceEEEEcHHHHHH
Confidence 567998776 56789999999999976 7899999999999999886 2 11 223478999999999999
Q ss_pred HHHHHhcCCCcEEE
Q 044427 409 ILDYIRSTEYPIAT 422 (734)
Q Consensus 409 l~~~~~~~~~~~~~ 422 (734)
|+.++.++.+.+++
T Consensus 124 l~~~l~~G~~Vtv~ 137 (138)
T cd02122 124 ILELLERGISVTMV 137 (138)
T ss_pred HHHHHHcCCcEEEe
Confidence 99999988766554
|
This group includes PA domain containing E3 (ubiquitin ligases) similar to human GRAIL (gene related to anergy in lymphocytes) protein. Proteins in this group contain a C3H2C3 RING finger. E3 ubiquitin ligase is part of an enzymic cascade, the end result of which is the ubiquitination of proteins. In this cascade, E1 activates the ubiquitin, the activated ubiquitin is carried by E2, and E3 recognizes the acceptor protein as well as catalyzes the transfer of the activated ubiquitin from E2 to this acceptor. GRAIL, a transmembrane protein localized in the endosomes, controls the development of T cell clonal anergy, and may ubiquitinate membrane-associated targets for T cell activation. GRAIL1 is associated with, and regulated by, two isoforms of otubain 1 (the ubiquitin-specific protease). Additional E3s belonging to this group include human (h)Goliath and Xenopus GREUL1 (Goliath Related E3 Ubiquitin Ligase |
| >cd04818 PA_subtilisin_1 PA_subtilisin_1: Protease-associated domain containing subtilisin-like proteases, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.2e-05 Score=71.73 Aligned_cols=79 Identities=18% Similarity=0.204 Sum_probs=62.7
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC--cc-----cCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD--LA-----FSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~--~~-----~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+.... .+++|||+||.|+.+ ..+++++||.|+|++|+.... +. ....+|++.|+.+++..|+
T Consensus 27 ~~~C~~~~~~-~~v~GkIvL~~rg~c~f~~k~~~a~~aGA~gvIi~~~~~~~~~~~~~~~~~~~~iP~v~V~~~~g~~l~ 105 (118)
T cd04818 27 TDGCTAFTNA-AAFAGKIALIDRGTCNFTVKVLNAQNAGAIAVIVANNVAGGAPITMGGDDPDITIPAVMISQADGDALK 105 (118)
T ss_pred ccccCCCCcC-CCCCCEEEEEECCCCCHHHHHHHHHHCCCeEEEEEECCCCCcceeccCCCCCCEEeEEEecHHHHHHHH
Confidence 5679887763 469999999998764 667899999999999887642 11 2346999999999999999
Q ss_pred HHHhcCCCcEEE
Q 044427 411 DYIRSTEYPIAT 422 (734)
Q Consensus 411 ~~~~~~~~~~~~ 422 (734)
+|++.+...+++
T Consensus 106 ~~l~~g~~v~v~ 117 (118)
T cd04818 106 AALAAGGTVTVT 117 (118)
T ss_pred HHHhcCCcEEEe
Confidence 999987655443
|
A subgroup of PA domain-containing subtilisin-like proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following subtilisin-like proteases: i) melon cucumisin, ii) Arabidopsis thaliana Ara12, iii) Alnus glutinosa ag12, iv) members of the tomato P69 family, and v) tomato LeSBT2. However, these proteins belong to other subtilisin-like subgroups. Relatively little is known about proteins in this subgroup. |
| >cd02129 PA_hSPPL_like PA_hSPPL_like: Protease-associated domain containing human signal peptide peptidase-like (hSPPL)-like | Back alignment and domain information |
|---|
Probab=97.92 E-value=3.2e-05 Score=70.12 Aligned_cols=74 Identities=15% Similarity=0.121 Sum_probs=62.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-------ccCcCcceEEeeccchHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-------AFSYPLPATLISKENGQDIL 410 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-------~~~~~~p~~~i~~~~~~~l~ 410 (734)
...|.+..+...+++|||+|++|+.+ ..+++++||.++|++|+..... .....||+++|+.++|+.|+
T Consensus 30 ~~gC~~~~~~~~~l~gkIaLV~RG~CsF~~K~~~Aq~aGA~aVII~nn~~~~~~~~~~~~~~~v~IP~v~Is~~dG~~i~ 109 (120)
T cd02129 30 SVLCSASDVPPGGLKGKAVVVMRGNCTFYEKARLAQSLGAEGLLIVSRERLVPPSGNRSEYEKIDIPVALLSYKDMLDIQ 109 (120)
T ss_pred cCCCCccccCccccCCeEEEEECCCcCHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCcCCcccEEEEeHHHHHHHH
Confidence 46799888888889999999999986 7899999999999999876311 14567899999999999999
Q ss_pred HHHhcC
Q 044427 411 DYIRST 416 (734)
Q Consensus 411 ~~~~~~ 416 (734)
+.+.+.
T Consensus 110 ~~l~~~ 115 (120)
T cd02129 110 QTFGDS 115 (120)
T ss_pred HHhccC
Confidence 887643
|
This group contains various PA domain-containing proteins similar to hSPPL2a and 2b. These SPPLs are GxGD aspartic proteases. SPPL2a is sorted to the late endosomes, SPPL2b to the plasma membrane. In activated dendritic cells, hSPPL2a and 2b catalyze the intramembrane proteolysis of tumor necrosis factor alpha triggering IL-12 production. hSPPL2a and 2b may have a broad substrate spectrum. The significance of the PA domain to these SPPLs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02130 PA_ScAPY_like PA_ScAPY_like: Protease-associated domain containing proteins like Saccharomyces cerevisiae aminopeptidase Y (ScAPY) | Back alignment and domain information |
|---|
Probab=97.91 E-value=7.7e-05 Score=68.55 Aligned_cols=78 Identities=21% Similarity=0.166 Sum_probs=62.0
Q ss_pred cccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCC-ccCc------ccCcCcceEEeeccchHHHHH
Q 044427 344 RFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSV-FTDL------AFSYPLPATLISKENGQDILD 411 (734)
Q Consensus 344 ~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~-~~~~------~~~~~~p~~~i~~~~~~~l~~ 411 (734)
..|.+..+ +.+++|||+|++|+.+ ..+++++||.++|++|+. .... .....||++.|+.++|..|+.
T Consensus 32 ~gC~~~~~-~~~~~gkIvlv~rg~c~f~~K~~~A~~aGA~~vIv~n~~~~~~~~~~~~~~~~~~Ip~v~Is~~~G~~L~~ 110 (122)
T cd02130 32 LGCDAADY-PASVAGNIALIERGECPFGDKSALAGAAGAAAAIIYNNVPAGGLSGTLGEPSGPYVPTVGISQEDGKALVA 110 (122)
T ss_pred CCCCcccC-CcCCCCEEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCcccccccCCCCCCEeeEEEecHHHHHHHHH
Confidence 35876555 3579999999999865 788999999999999987 3222 234569999999999999999
Q ss_pred HHhcCCCcEEE
Q 044427 412 YIRSTEYPIAT 422 (734)
Q Consensus 412 ~~~~~~~~~~~ 422 (734)
.+.++.+.+++
T Consensus 111 ~l~~g~~v~~~ 121 (122)
T cd02130 111 ALANGGEVSAN 121 (122)
T ss_pred HHhcCCcEEEe
Confidence 99988766543
|
This group contains various PA domain-containing proteins similar to the S. cerevisiae APY, including Trichophyton rubrum leucine aminopeptidase 1(LAP1). Proteins in this group belong to the peptidase M28 family. ScAPY hydrolyzes amino acid-4-methylcoumaryl-7-amides (MCAs). ScAPY more rapidly hydrolyzes dipeptidyl-MCAs. Hydrolysis of amino acid-MCAs or dipeptides is stimulated by Co2+ while the hydrolysis of dipeptidyl-MCAs, tripeptides, and longer peptides is inhibited by Co2+. ScAPY is vacuolar and is activated by proteolytic processing. LAP1 is a secreted leucine aminopeptidase. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stab |
| >cd02127 PA_hPAP21_like PA_hPAP21_like: Protease-associated domain containing proteins like the human secreted glycoprotein hPAP21 (human protease-associated domain-containing protein, 21kDa) | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.7e-05 Score=68.75 Aligned_cols=80 Identities=20% Similarity=0.221 Sum_probs=64.4
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC----c---c----cCcCcceEEeeccch
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD----L---A----FSYPLPATLISKENG 406 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~----~---~----~~~~~p~~~i~~~~~ 406 (734)
...|.+.. ...+++|+|+|++|+.| ..+++++||.++|++|+.... + . ....||+++|+..+|
T Consensus 21 ~~gC~~~~-~~~~~~g~I~Lv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~~~~m~~~~~~~~i~IP~v~Is~~dG 99 (118)
T cd02127 21 LEACEELR-NIHDINGNIALIERGGCSFLTKAINAQKAGALAVIITDVNNDSDEYYVEMIQDDSSRRADIPAAFLLGKNG 99 (118)
T ss_pred cccCCCCC-CccccCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCCccccceEecCCCCCCCceEEEEEecHHHH
Confidence 45798643 35679999999999886 778999999999999986531 1 1 235799999999999
Q ss_pred HHHHHHHhcCCCcEEEE
Q 044427 407 QDILDYIRSTEYPIATI 423 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~~i 423 (734)
+.|+..+..+..+++.|
T Consensus 100 ~~L~~~l~~g~~~~~~~ 116 (118)
T cd02127 100 YMIRKTLERLGLPYAII 116 (118)
T ss_pred HHHHHHHHcCCceEEee
Confidence 99999999988776655
|
This group contains various PA domain-containing proteins similar to hPAP21. Complex N-glycosylation may be required for the secretion of hPAP21. The significance of the PA domain to hPAP21 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd00538 PA PA: Protease-associated (PA) domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=4.4e-05 Score=70.30 Aligned_cols=79 Identities=15% Similarity=0.107 Sum_probs=63.5
Q ss_pred cccccccc--CCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc----c-----cCcCcceEEeeccch
Q 044427 343 ARFCAADA--LNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL----A-----FSYPLPATLISKENG 406 (734)
Q Consensus 343 ~~~c~~~~--~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~----~-----~~~~~p~~~i~~~~~ 406 (734)
...|.+.. +...+++||||||.|+.+ ..+++++||.|+|++++..... . ....+|++.|+.+++
T Consensus 30 ~~~C~~~~~~~~~~~~~GkIvl~~~g~~~~~~k~~~a~~~GA~gvii~~~~~~~~~~~~~~~~~~~~~~iP~~~is~~~g 109 (126)
T cd00538 30 LVGCGYGTTDDSGADVKGKIVLVRRGGCSFSEKVKNAQKAGAKAVIIYNNGDDPGPQMGSVGLESTDPSIPTVGISYADG 109 (126)
T ss_pred eEEEecCcccccCCCccceEEEEECCCcCHHHHHHHHHHCCCEEEEEEECCCCcccccccccCCCCCCcEeEEEeCHHHH
Confidence 45688776 677889999999998764 6789999999999999876321 1 345799999999999
Q ss_pred HHHHHHHhcCCCcEE
Q 044427 407 QDILDYIRSTEYPIA 421 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~ 421 (734)
..|++++.++.+.++
T Consensus 110 ~~l~~~~~~~~~v~~ 124 (126)
T cd00538 110 EALLSLLEAGKTVTV 124 (126)
T ss_pred HHHHHHHhcCCceEE
Confidence 999999987665443
|
The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases including, hSPPL2a and 2b which catalyze the intramembrane proteolysis of tumor necrosis factor alpha, ii) various proteins containing a C3H2C3 RING finger including, Arabidopsis ReMembR-H2 protein and various E3 ubiquitin ligases such as human GRAIL (gene related to anergy in lymphocytes), iii) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), iv) various plant vacuolar sorting receptors such as Pisum sativum BP-80, v) g |
| >cd02124 PA_PoS1_like PA_PoS1_like: Protease-associated (PA) domain PoS1-like | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=66.81 Aligned_cols=78 Identities=12% Similarity=0.082 Sum_probs=61.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc----ccCcCcceEEeeccchHHHHHHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL----AFSYPLPATLISKENGQDILDYI 413 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~----~~~~~~p~~~i~~~~~~~l~~~~ 413 (734)
...|.+.+.+..+++|||+|++|+.| ..+++++||.++|++|+....+ .+...+|.+.+ .++|+.|++.+
T Consensus 41 ~~gC~~~~~~~~~~~g~IaLv~rg~c~f~~K~~nA~~aGA~aviiyn~~~~~~~~~~~~~~~~~~~~~-~~~G~~l~~~l 119 (129)
T cd02124 41 DDACQPLPDDTPDLSGYIVLVRRGTCTFATKAANAAAKGAKYVLIYNNGSGPTDQVGSDADSIIAAVT-PEDGEAWIDAL 119 (129)
T ss_pred cccCcCCCcccccccCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCCcccccCCCCcceeeEEe-HHHHHHHHHHH
Confidence 56899876666689999999999875 7889999999999999876433 23334566666 99999999999
Q ss_pred hcCCCcEE
Q 044427 414 RSTEYPIA 421 (734)
Q Consensus 414 ~~~~~~~~ 421 (734)
.++...++
T Consensus 120 ~~G~~vtv 127 (129)
T cd02124 120 AAGSNVTV 127 (129)
T ss_pred hcCCeEEE
Confidence 87765444
|
This group includes various PA domain-containing proteins similar to Pleurotus ostreatus (Po)S1. PoSl, the main extracellular protease in P. ostreatus is a subtilisin-like serine protease belonging to the peptidase S8 family. Ca2+ and Mn2+ both stimulate the protease activity of (Po)S1. Ca2+ protects PoS1 from autolysis. PoS1 is a monomeric glycoprotein, which may play a role in the regulation of laccases in lignin formation. (Po)S1 participates in the degradation of POXA1b, and in the activation of POXA3, (POXA1b and POXA3 are laccase isoenzymes), but its effect may be indirect. The significance of the PA domain to PoS1 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02132 PA_GO-like PA_GO-like: Protease-associated domain containing proteins like Arabidopsis thaliana growth-on protein GRO10 | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00015 Score=68.20 Aligned_cols=76 Identities=12% Similarity=0.143 Sum_probs=61.2
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-----c----cCcCcceEEeeccchHH
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-----A----FSYPLPATLISKENGQD 408 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-----~----~~~~~p~~~i~~~~~~~ 408 (734)
...|.+.. .+++|||+|+.|+.| ..+++++||.++|++|+..... . ....||+++|+..+|..
T Consensus 48 ~~gC~~~~---~~~~g~IvLV~RG~C~F~~K~~nA~~aGA~avIv~n~~~~~~~~~~~~~~~~~~~~IP~v~Is~~~G~~ 124 (139)
T cd02132 48 LDCCSPST---SKLSGSIALVERGECAFTEKAKIAEAGGASALLIINDQEELYKMVCEDNDTSLNISIPVVMIPQSAGDA 124 (139)
T ss_pred ccccCCCC---cccCCeEEEEECCCCCHHHHHHHHHHcCCcEEEEEECCCcccccccCCCCCCCCCcEeEEEecHHHHHH
Confidence 45798754 378999999999986 7899999999999998875321 1 13579999999999999
Q ss_pred HHHHHhcCCCcEE
Q 044427 409 ILDYIRSTEYPIA 421 (734)
Q Consensus 409 l~~~~~~~~~~~~ 421 (734)
|+..+.++...++
T Consensus 125 L~~~l~~g~~Vtv 137 (139)
T cd02132 125 LNKSLDQGKKVEV 137 (139)
T ss_pred HHHHHHcCCcEEE
Confidence 9999988765443
|
This group contains various PA domain-containing proteins similar to the functionally uncharacterized Arabidopsis GRO10. The PA domain may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02126 PA_EDEM3_like PA_EDEM3_like: protease associated domain (PA) domain-containing EDEM3-like proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=8.6e-05 Score=68.56 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=61.1
Q ss_pred ccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC------c------c---cCcCcceEEee
Q 044427 343 ARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD------L------A---FSYPLPATLIS 402 (734)
Q Consensus 343 ~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~------~------~---~~~~~p~~~i~ 402 (734)
...|.+... ..+++|||+|++|+.| ..+++++||.++|++|+.... + . +...||+++|+
T Consensus 27 ~~gC~~~~~-~~~~~gkIaLv~RG~C~f~~K~~~Aq~aGA~avII~n~~~~~~~~~~~~~~m~~~~~~~~~~~IP~v~I~ 105 (126)
T cd02126 27 YRACSEITN-AEEVKGKIAIMERGDCMFVEKARRVQKAGAIGGIVIDNNEGSSSDTAPMFAMSGDGDSTDDVTIPVVFLF 105 (126)
T ss_pred hhcccCCCC-ccccCceEEEEECCCCcHHHHHHHHHHCCCcEEEEEECCCCccccccceeEeecCCCCCCCCeEEEEEEE
Confidence 467986544 5578999999999875 789999999999999876531 1 1 24578999999
Q ss_pred ccchHHHHHHHhcCCCcE
Q 044427 403 KENGQDILDYIRSTEYPI 420 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~ 420 (734)
..+|..|+..+..+...+
T Consensus 106 ~~dG~~L~~~l~~~~~~~ 123 (126)
T cd02126 106 SKEGSKLLAAIKEHQNVE 123 (126)
T ss_pred HHHHHHHHHHHHhCCceE
Confidence 999999999998876544
|
This group contains various PA domain-containing proteins similar to mouse EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein). EDEM3 contains a region, similar to Class I alpha-mannosidases (gylcosyl hydrolase family 47), N-terminal to the PA domain. EDEM3 accelerates glycoprotein ERAD (ER-associated degradation). In transfected mammalian cells, overexpression of EDEM3 enhances the mannose trimming from the N-glycans, of a model misfolded protein [alpha1-antitrypsin null (Hong Kong)] as well as, from total glycoproteins. Mannose trimming appears to be involved in the selection of ERAD substrates. EDEM3 has a different specificity of trimming than ER alpha-mannosidase 1. The significance of the PA domain to EDEM3 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or pr |
| >cd02125 PA_VSR PA_VSR: Protease-associated (PA) domain-containing plant vacuolar sorting receptor (VSR) | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=67.48 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=62.3
Q ss_pred ccccccccCC--CC----CcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc--------------ccCcCcc
Q 044427 343 ARFCAADALN--SY----KVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL--------------AFSYPLP 397 (734)
Q Consensus 343 ~~~c~~~~~~--~~----~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~--------------~~~~~~p 397 (734)
...|.+.... +. ...++|+|++|+.| ..+++++||.++|++|+....+ .....||
T Consensus 22 ~~gC~~~~~~~~~~~~~~~~~~~IvLv~RG~C~F~~K~~~Aq~aGA~avII~n~~~~~~~~m~~~~~~~~~~~~~~i~IP 101 (127)
T cd02125 22 RTGCKEFDVFFKPKKSEPGRRPVILLLDRGGCFFTLKAWNAQQAGAAAVLVADNVDEPLLTMDTPEESGSADYIEKITIP 101 (127)
T ss_pred cccCCCCcccccccccccCCCceEEEEECCCcCHHHHHHHHHHCCCcEEEEEECCCCccccccCcccccccccCCCceEe
Confidence 4578865542 22 37789999999975 8899999999999999876432 1234689
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEE
Q 044427 398 ATLISKENGQDILDYIRSTEYPIAT 422 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~ 422 (734)
+++|+..+|+.|+..+.++...+++
T Consensus 102 ~v~Is~~~G~~L~~~l~~g~~V~v~ 126 (127)
T cd02125 102 SALITKAFGEKLKKAISNGEMVVIK 126 (127)
T ss_pred EEEECHHHHHHHHHHHhcCCeEEEe
Confidence 9999999999999999988765543
|
This group includes various PA domain-containing VSRs such as garden pea BP-80, pumpkin PV72, and various Arabidopsis VSRs including AtVSR1. In contrast to most eukaryotes, which only have one or two VSRs, plants have several. This may in part be a reflection of having a more complex vacuolar system with both lytic vacuoles and storage vacuoles. The lytic vacuole is thought to be equivalent to the mammalian lysosome and the yeast vacuole. Pea BP-80 is a type 1 transmembrane protein, involved in the targeting of proteins to the lytic vacuole; it has been suggested that this protein also mediates targeting to the storage vacuole. PV72 and AtVSR1 may mediate transport of seed storage proteins to protein storage vacuoles. The significance of the PA domain to VSRs has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may partic |
| >cd04813 PA_1 PA_1: Protease-associated (PA) domain subgroup 1 | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=66.24 Aligned_cols=73 Identities=12% Similarity=0.089 Sum_probs=59.2
Q ss_pred cccccccccCCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccC-c--------ccCcCcceEEeeccchH
Q 044427 342 IARFCAADALNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTD-L--------AFSYPLPATLISKENGQ 407 (734)
Q Consensus 342 ~~~~c~~~~~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~-~--------~~~~~~p~~~i~~~~~~ 407 (734)
....|.+. +..+++|||+|+.|+.| ..+++++||.++|++|+.... + .....+|+++|+.+++.
T Consensus 26 p~~gC~~~--~~~~l~gkIvLV~RG~CsF~~K~~nAq~aGA~avII~n~~~~~~~~~m~~~~~~~~v~IPav~Is~~~g~ 103 (117)
T cd04813 26 PTDACSLQ--EHAEIDGKVALVLRGGCGFLDKVMWAQRRGAKAVIVGDDEPGRGLITMFSNGDTDNVTIPAMFTSRTSYH 103 (117)
T ss_pred CCCCCCCC--CcCCcCCeEEEEECCCCCHHHHHHHHHHCCCcEEEEEECCCcccceecccCCCCCCcEEEEEEEcHHHHH
Confidence 35679765 56789999999999976 788999999999999877632 1 23457999999999999
Q ss_pred HHHHHHhcC
Q 044427 408 DILDYIRST 416 (734)
Q Consensus 408 ~l~~~~~~~ 416 (734)
.|+.++..+
T Consensus 104 ~L~~l~~~~ 112 (117)
T cd04813 104 LLSSLLPKS 112 (117)
T ss_pred HHHHhcccc
Confidence 999887654
|
A subgroup of PA-domain containing proteins. Proteins in this subgroup contain a RING-finger (Really Interesting New Gene) domain C-terminal to this PA domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabid |
| >cd04817 PA_VapT_like PA_VapT_like: Protease-associated domain containing proteins like VapT from Vibrio metschnikovii strain RH530 | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00028 Score=65.86 Aligned_cols=66 Identities=14% Similarity=0.154 Sum_probs=53.3
Q ss_pred CCCCCcCceEEEEeeCCc----------chhhhccCceEEEEecCC--ccCc----c---cCcCcceEEeeccchHHHHH
Q 044427 351 LNSYKVEGKIVFCESLLD----------GSDILAVNGLGTIMADSV--FTDL----A---FSYPLPATLISKENGQDILD 411 (734)
Q Consensus 351 ~~~~~~~gkiv~~~~~~~----------~~~~~~~Ga~g~i~~n~~--~~~~----~---~~~~~p~~~i~~~~~~~l~~ 411 (734)
+...+++|||+|++|+.+ .++++++||.|+|+||+. ...+ . ....||++.|+.++|+.|+.
T Consensus 50 ~~~~d~~GkIaLI~RG~c~~~~~~f~~Kv~~A~~aGA~avIIyNn~~~~g~~~~~lg~~~~~~~IP~v~is~~dG~~L~~ 129 (139)
T cd04817 50 YICGGMAGKICLIERGGNSKSVYPEIDKVKACQNAGAIAAIVYSNAALAGLQNPFLVDTNNDTTIPSVSVDRADGQALLA 129 (139)
T ss_pred ccCCCcCccEEEEECCCCCCCcccHHHHHHHHHHCCCeEEEEEeCCCCCCcccccccCCCCCceEeEEEeeHHHHHHHHH
Confidence 445579999999999865 568999999999999998 4322 1 14689999999999999999
Q ss_pred HHhcC
Q 044427 412 YIRST 416 (734)
Q Consensus 412 ~~~~~ 416 (734)
.+...
T Consensus 130 ~l~~~ 134 (139)
T cd04817 130 ALGQS 134 (139)
T ss_pred HhcCC
Confidence 87543
|
This group contains various PA domain-containing proteins similar to V. metschnikovii VapT, including the serine alkaline protease SapSh from the psychotroph Shewanella strain Ac10 and the Apa1 protease from the psychrotroph Pseudoalteromonas Sp. As-11. VapT is a sodium dodecyl sulfate (SDS) resistant extracellular alkaline serine protease showing high activity over a broad pH range and temperature. SapSh has a high level of protease activity at low temperatures. Apa1 is also cold-adapted. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd04819 PA_2 PA_2: Protease-associated (PA) domain subgroup 2 | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0013 Score=60.92 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=62.9
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc-------chhhhccCceEEEEecCCccCc--
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD-------GSDILAVNGLGTIMADSVFTDL-- 390 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~-------~~~~~~~Ga~g~i~~n~~~~~~-- 390 (734)
....++++.+.. .+..+...+++|||++++++.+ ..++.++||.|+|++|+....+
T Consensus 22 ~~~~~lV~~g~G---------------~~~d~~~~~v~GkIvlv~~g~~~~~~~~k~~~A~~~GA~avi~~~~~~g~~~~ 86 (127)
T cd04819 22 EAKGEPVDAGYG---------------LPKDFDGLDLEGKIAVVKRDDPDVDRKEKYAKAVAAGAAAFVVVNTVPGVLPA 86 (127)
T ss_pred CeeEEEEEeCCC---------------CHHHcCCCCCCCeEEEEEcCCCchhHHHHHHHHHHCCCEEEEEEeCCCCcCcc
Confidence 356778876542 2223445679999999999764 6789999999999998766432
Q ss_pred --------ccCcCcceEEeeccchHHHHHHHhcCC
Q 044427 391 --------AFSYPLPATLISKENGQDILDYIRSTE 417 (734)
Q Consensus 391 --------~~~~~~p~~~i~~~~~~~l~~~~~~~~ 417 (734)
.....+|++.|+.+++..|.+.++.+.
T Consensus 87 ~~~~~~~~~~~~~IP~v~Is~edg~~L~~~l~~g~ 121 (127)
T cd04819 87 TGDEGTEDGPPSPIPAASVSGEDGLRLARVAERND 121 (127)
T ss_pred cccccccCCCCCCCCEEEEeHHHHHHHHHHHhcCC
Confidence 113469999999999999999998754
|
A subgroup of PA-domain containing proteins. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins in this group contain a C-terminal RING-finger domain. Proteins into which the PA domain is inserted include the following: i) various signal peptide peptidases: such as hSPPL2a and 2b, ii) various E3 ubiquitin ligases similar to human GRAIL (gene related to anergy in lymphocytes) protein, iii) various proteins containing a RING finger motif such as Arabidopsis ReMembR-H2 protein, iv) EDEM3 (ER-degradation-enhancing mannosidase-like 3 protein), v) various plant vacuola |
| >cd02123 PA_C_RZF_like PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00043 Score=66.15 Aligned_cols=76 Identities=13% Similarity=0.089 Sum_probs=62.1
Q ss_pred ccccccccCCC---CCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc-------c--cCcCcceEEeeccc
Q 044427 343 ARFCAADALNS---YKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL-------A--FSYPLPATLISKEN 405 (734)
Q Consensus 343 ~~~c~~~~~~~---~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~-------~--~~~~~p~~~i~~~~ 405 (734)
.++|.+....+ ..+.|+|+|+.|+.| ..+++++||.++|++|+....+ . ....||+++|+..+
T Consensus 50 ~~gC~~~~~~~~~~~~~~g~IvLV~RG~CtF~~Kv~nAq~aGA~avII~n~~~~~~~~m~~~~~~~~~v~IP~v~Is~~d 129 (153)
T cd02123 50 LNACSPIENPPLNSNASGSFIVLIRRGNCSFETKVRNAQRAGYKAAIVYNDESNDLISMSGNDQEIKGIDIPSVFVGKST 129 (153)
T ss_pred cccCCCCcccccccccCCCeEEEEECCCCCHHHHHHHHHHCCCCEEEEEECCCCcceeccCCCCCCcCCEEEEEEeeHHH
Confidence 45798766543 789999999999976 7899999999999999876432 1 24589999999999
Q ss_pred hHHHHHHHhcCCC
Q 044427 406 GQDILDYIRSTEY 418 (734)
Q Consensus 406 ~~~l~~~~~~~~~ 418 (734)
|..|+.++.....
T Consensus 130 g~~L~~~l~~~~~ 142 (153)
T cd02123 130 GEILKKYASYEKG 142 (153)
T ss_pred HHHHHHHHhcCCc
Confidence 9999999887654
|
This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo cells and is restricted mainly to brain and heart, it is localized to both the nucleus and endosomes. Additional C3H2C3 RING finger proteins belonging to this group, include Arabidopsis ReMembR-H2 protein and mouse sperizin. ReMembR-H2 is likely to be an integral membrane protein, and to traffic through the endosomal pathway. Sperizin is expressed in haploid germ cells and localized in the cytoplasm, it may participate in spermatogenesis. The significance of the PA domain to these proteins has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and acce |
| >PF14874 PapD-like: Flagellar-associated PapD-like | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.06 Score=47.46 Aligned_cols=80 Identities=26% Similarity=0.161 Sum_probs=61.3
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEcCceEEEeEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPV 696 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~ 696 (734)
..+.+++|+|.|..+..|++.........++++|..-.+ ++|++.++.|++.+... .+.+.+.|...-....+.+|+
T Consensus 21 ~~~~~v~l~N~s~~p~~f~v~~~~~~~~~~~v~~~~g~l-~PG~~~~~~V~~~~~~~--~g~~~~~l~i~~e~~~~~i~v 97 (102)
T PF14874_consen 21 TYSRTVTLTNTSSIPARFRVRQPESLSSFFSVEPPSGFL-APGESVELEVTFSPTKP--LGDYEGSLVITTEGGSFEIPV 97 (102)
T ss_pred EEEEEEEEEECCCCCEEEEEEeCCcCCCCEEEECCCCEE-CCCCEEEEEEEEEeCCC--CceEEEEEEEEECCeEEEEEE
Confidence 567889999999999999987644234457778877667 68999999999996432 446889888876556788888
Q ss_pred EEE
Q 044427 697 VIY 699 (734)
Q Consensus 697 ~~~ 699 (734)
-+.
T Consensus 98 ~a~ 100 (102)
T PF14874_consen 98 KAE 100 (102)
T ss_pred EEE
Confidence 654
|
|
| >cd04815 PA_M28_2 PA_M28_2: Protease-associated (PA) domain, peptidase family M28, subfamily-2 | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.011 Score=55.25 Aligned_cols=70 Identities=16% Similarity=0.109 Sum_probs=54.8
Q ss_pred CCCCcCceEEEEeeCCc------------------chhhhccCceEEEEecCCcc--------Cc---ccCcCcceEEee
Q 044427 352 NSYKVEGKIVFCESLLD------------------GSDILAVNGLGTIMADSVFT--------DL---AFSYPLPATLIS 402 (734)
Q Consensus 352 ~~~~~~gkiv~~~~~~~------------------~~~~~~~Ga~g~i~~n~~~~--------~~---~~~~~~p~~~i~ 402 (734)
...+++||||++.++.+ ...+.++||+++|++|.... .+ .....+|++.|+
T Consensus 34 ~~~~v~GKIvlv~~~~~~~~~~~~~~~k~~~r~~~~~~A~~~GA~avIv~s~~~~~~~~~~~G~~~~~~~~~~IP~v~is 113 (134)
T cd04815 34 PAGAVKGKIVFFNQPMVRTQTGSGYGPTVAYRRRGAVEAAKKGAVAVLIRSIGTDSHRSPHTGMMSYDDGVPKIPAAAIS 113 (134)
T ss_pred chhhcCCeEEEecCCccccCchhhcCchhhhhhHHHHHHHhCCCEEEEEEecCcccCCCCcCCccccCCCCCCCCEEEec
Confidence 35689999999988776 58899999999999985421 11 123469999999
Q ss_pred ccchHHHHHHHhcCCCcEE
Q 044427 403 KENGQDILDYIRSTEYPIA 421 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~ 421 (734)
.+++..|...+..+..+..
T Consensus 114 ~ed~~~L~r~l~~g~~v~~ 132 (134)
T cd04815 114 VEDADMLERLAARGKPIRV 132 (134)
T ss_pred hhcHHHHHHHHhCCCCeEE
Confidence 9999999999988765443
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies; relatively little is known a |
| >PF06030 DUF916: Bacterial protein of unknown function (DUF916); InterPro: IPR010317 This family consists of putative cell surface proteins, from Firmicutes, of unknown function | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.25 Score=45.20 Aligned_cols=78 Identities=26% Similarity=0.371 Sum_probs=57.7
Q ss_pred ceeeeecCCCceEEEEEEEEEecCCCCeeEEEEeeC----CCce--------------------EEEEEcCeeEEeeCCc
Q 044427 605 SFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYM----PASV--------------------SVDVEPQSLSFSAVGE 660 (734)
Q Consensus 605 si~~~~~~~~~~~~~~~~tv~N~~~~~~ty~~~v~~----~~g~--------------------~v~v~p~~~~~~~~g~ 660 (734)
.|.+....+. ..+++++|+|.++++.+|.+.+.. ..|+ -+++ |..+++ ++++
T Consensus 18 YFdL~~~P~q--~~~l~v~i~N~s~~~~tv~v~~~~A~Tn~nG~I~Y~~~~~~~d~sl~~~~~~~v~~-~~~Vtl-~~~~ 93 (121)
T PF06030_consen 18 YFDLKVKPGQ--KQTLEVRITNNSDKEITVKVSANTATTNDNGVIDYSQNNPKKDKSLKYPFSDLVKI-PKEVTL-PPNE 93 (121)
T ss_pred eEEEEeCCCC--EEEEEEEEEeCCCCCEEEEEEEeeeEecCCEEEEECCCCcccCcccCcchHHhccC-CcEEEE-CCCC
Confidence 3555555555 788999999999999999997532 2221 1111 455888 6899
Q ss_pred EEEEEEEEEccccCCCCceEEEEEEE
Q 044427 661 QKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 661 ~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
+++++++|+.+...-.+.+-|-|.|+
T Consensus 94 sk~V~~~i~~P~~~f~G~ilGGi~~~ 119 (121)
T PF06030_consen 94 SKTVTFTIKMPKKAFDGIILGGIYFS 119 (121)
T ss_pred EEEEEEEEEcCCCCcCCEEEeeEEEE
Confidence 99999999999877678888888876
|
|
| >PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.094 Score=43.88 Aligned_cols=58 Identities=29% Similarity=0.320 Sum_probs=37.0
Q ss_pred EEEEEEEEEecCCCC-eeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccC
Q 044427 617 YGVFTRTVTNVGSPN-STYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIA 674 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 674 (734)
+.+++++|+|.++.+ ...++++..|.|-++...|.++.--++|++++++++|+++...
T Consensus 6 ~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~~~~~~~l~pG~s~~~~~~V~vp~~a 64 (78)
T PF10633_consen 6 TVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSASPASVPSLPPGESVTVTFTVTVPADA 64 (78)
T ss_dssp EEEEEEEEE--SSS-BSS-EEEEE--TTSE---EEEEE--B-TTSEEEEEEEEEE-TT-
T ss_pred EEEEEEEEEECCCCceeeEEEEEeCCCCccccCCccccccCCCCCEEEEEEEEECCCCC
Confidence 678999999999765 3477888889998877788877533799999999999998653
|
It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A. |
| >PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.37 Score=43.76 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=42.8
Q ss_pred ceEEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccC
Q 044427 615 PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIA 674 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~ 674 (734)
.+.-.++++|+|.++.+.+|++++..++|+++......+++ ++|+++++.|.|.++...
T Consensus 30 ~I~N~Y~lkl~Nkt~~~~~~~i~~~g~~~~~l~~~~~~i~v-~~g~~~~~~v~v~~p~~~ 88 (118)
T PF11614_consen 30 SIRNQYTLKLTNKTNQPRTYTISVEGLPGAELQGPENTITV-PPGETREVPVFVTAPPDA 88 (118)
T ss_dssp SEEEEEEEEEEE-SSS-EEEEEEEES-SS-EE-ES--EEEE--TT-EEEEEEEEEE-GGG
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEecCCCeEEECCCcceEE-CCCCEEEEEEEEEECHHH
Confidence 35667899999999999999999999889998655588889 689999999999998754
|
|
| >cd04822 PA_M28_1_3 PA_M28_1_3: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 3 | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.14 Score=48.62 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=54.2
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------------cchhhhccCc
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------------DGSDILAVNG 377 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------------~~~~~~~~Ga 377 (734)
.+-++|+.+... ....|....+...+++|||||+.++. |..++...||
T Consensus 20 vtg~lVfvGyGi---------~~~~~~~~Dy~giDVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~GA 90 (151)
T cd04822 20 VTAPVVFAGYGI---------TAPELGYDDYAGLDVKGKIVLVLRHEPQEDDANSRFNGPGLTRHAGLRYKATNARRHGA 90 (151)
T ss_pred ceEeEEEecCCc---------CccccchhhccCCCCCCeEEEEEcCCcccccccccccccccccccCHHHHHHHHHHCCC
Confidence 356777766432 13457766777889999999997763 3678899999
Q ss_pred eEEEEecCCccCcccCcCcc------eEEeeccchHHHHH
Q 044427 378 LGTIMADSVFTDLAFSYPLP------ATLISKENGQDILD 411 (734)
Q Consensus 378 ~g~i~~n~~~~~~~~~~~~p------~~~i~~~~~~~l~~ 411 (734)
+|+|++++..........+| ...++....+.+..
T Consensus 91 ~aVIv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (151)
T cd04822 91 AAVIVVNGPNSHSGDADRLPRFGGTAPQRVDIAAADPWFT 130 (151)
T ss_pred eEEEEEeCCcccCcccccccccCccceEEechHHHHHHhh
Confidence 99999998765432222222 45565555555554
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd02128 PA_TfR PA_TfR: Protease-associated domain containing proteins like transferrin receptor (TfR) | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.16 Score=49.64 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=47.9
Q ss_pred CCCcCceEEEEeeCC-----cchhhhccCceEEEEecCCccC--------------------c-------c---------
Q 044427 353 SYKVEGKIVFCESLL-----DGSDILAVNGLGTIMADSVFTD--------------------L-------A--------- 391 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~-----~~~~~~~~Ga~g~i~~n~~~~~--------------------~-------~--------- 391 (734)
..+++|||+|+.++. |..+|+++||+|+|+|++.... + .
T Consensus 51 gv~v~GkIvLvr~G~~~~~~Kv~~A~~~GA~gvIiy~Dp~d~~~~~~~~~~~g~~~~~~GDplTPG~ps~~~~~~~~~~~ 130 (183)
T cd02128 51 GVSVNGSVVLVRAGKISFAEKVANAEKLGAVGVLIYPDPADFPIDPSETALFGHVHLGTGDPYTPGFPSFNHTQFPPSQS 130 (183)
T ss_pred CCCCCCeEEEEECCCCCHHHHHHHHHHCCCEEEEEecCHHHcCcccCcceeecceeccCCCcCCCCCccccccccCcccc
Confidence 457999999999875 4789999999999999984210 0 0
Q ss_pred -cCcCcceEEeeccchHHHHHHHhc
Q 044427 392 -FSYPLPATLISKENGQDILDYIRS 415 (734)
Q Consensus 392 -~~~~~p~~~i~~~~~~~l~~~~~~ 415 (734)
.--.||+.-|+..++..|++.+.-
T Consensus 131 ~~lP~IPs~PIS~~da~~lL~~l~G 155 (183)
T cd02128 131 SGLPNIPAQTISAAAAAKLLSKMGG 155 (183)
T ss_pred cCCCCCCEeccCHHHHHHHHHHcCC
Confidence 012488899999999999987753
|
This group contains various PA domain-containing proteins similar to human TfR1 and TfR2. TfR1 and TfR2 are type II membrane proteins, belonging to the peptidase M28 family. TfR1 is homodimeric, widely expressed, and a key player in the uptake of iron-loaded transferrin (Tf) into cells. The TfR1 homodimer binds two molecules of Tf and this complex is internalized. In addition to its role in iron uptake, TfR1 may participate in cell growth and proliferation. TfR2 also binds Tf but with a significantly lower affinity than does TfR1. TfR2 is expressed chiefly in hepatocytes, hematopoietic cells, and duodenal crypt cells; its expression overlaps with that of hereditary hemochromatosis protein (HFE). TfR2 is involved in iron homeostasis. HFE and TfR2 interact in cells. By one model for serum iron sensing, at low or basal iron concentrations, HFE and TFR1 form a complex at the plasma membra |
| >cd04820 PA_M28_1_1 PA_M28_1_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1, subgroup 1 | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.14 Score=47.79 Aligned_cols=58 Identities=22% Similarity=0.230 Sum_probs=44.7
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------cchhhhccCceEEEEe
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------DGSDILAVNGLGTIMA 383 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------~~~~~~~~Ga~g~i~~ 383 (734)
..-++++.+... ....|....+...+++|||||+.++. |...+.++||.|+|++
T Consensus 22 v~gelVfvGyG~---------~~~~~~~~Dy~~iDVkGKIVlv~~g~p~~~~~~~~~~~~~~~~K~~~A~~~GA~aVIi~ 92 (137)
T cd04820 22 VEAPLVFVGYGL---------VAPELGHDDYAGLDVKGKIVVVLSGGPAGIPSEEGAHAHSSNEKARYAAKAGAIGMITL 92 (137)
T ss_pred ceEeEEEecCCc---------CccCcCHhhccCCCCCCeEEEEEcCCCCccccccccccccHHHHHHHHHHCCCeEEEEE
Confidence 456777766432 13457777777889999999999765 3678899999999999
Q ss_pred cCCc
Q 044427 384 DSVF 387 (734)
Q Consensus 384 n~~~ 387 (734)
++..
T Consensus 93 ~d~~ 96 (137)
T cd04820 93 TTPR 96 (137)
T ss_pred eCCc
Confidence 9864
|
A subgroup of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subgroups; relatively litt |
| >cd04814 PA_M28_1 PA_M28_1: Protease-associated (PA) domain, peptidase family M28, subfamily-1 | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.2 Score=47.06 Aligned_cols=59 Identities=17% Similarity=0.139 Sum_probs=44.9
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCC-----------------------cchhhhccC
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLL-----------------------DGSDILAVN 376 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~-----------------------~~~~~~~~G 376 (734)
....|+++.+..- ....|....+...+++||||++.++. |...+.++|
T Consensus 19 ~~~aelVfvGyGi---------~a~~~~~dDYag~DVkGKIVlv~~g~P~~~~~~~~~~~~~~~~~~~~~~K~~~A~~~G 89 (142)
T cd04814 19 IKDAPLVFVGYGI---------KAPELSWDDYAGLDVKGKVVVVLRNDPQGEPGAGDFGGKAMTYYGRWTYKYEEAARHG 89 (142)
T ss_pred ccceeeEEecCCc---------CCCCCChhhcCCCCCCCcEEEEEcCCCCcccccccccccccccccCHHHHHHHHHHCC
Confidence 3467888876432 13458877888889999999997663 356788999
Q ss_pred ceEEEEecCCc
Q 044427 377 GLGTIMADSVF 387 (734)
Q Consensus 377 a~g~i~~n~~~ 387 (734)
|.|+|++++..
T Consensus 90 A~gvIii~~~~ 100 (142)
T cd04814 90 AAGVLIVHELA 100 (142)
T ss_pred CcEEEEEeCCC
Confidence 99999999865
|
A subfamily of PA-domain containing proteins belonging to the peptidase family M28. Family M28 contains aminopeptidases and carboxypeptidases, and has co-catalytic zinc ions. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. Proteins into which the PA domain is inserted include the following members of the peptidase family M28: i) prostate-specific membrane antigen (PSMA), ii) yeast aminopeptidase Y, and ii) human TfR (transferrin receptor)1 and human TfR2. The proteins listed above belong to other subfamilies, relatively little is known a |
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.9 Score=47.62 Aligned_cols=80 Identities=19% Similarity=0.249 Sum_probs=63.7
Q ss_pred eeeeecCCCceEEEEEEEEEecCCCCee-EEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEE
Q 044427 606 FSLAIEDGQPIYGVFTRTVTNVGSPNST-YTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIV 684 (734)
Q Consensus 606 i~~~~~~~~~~~~~~~~tv~N~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~ 684 (734)
..+....|. ..+....+.|.|+.+.| -.+++..|.|-++.|+|.++---++|+++++.+|++++.....+-|+=+|.
T Consensus 389 ~~lt~taGe--e~~i~i~I~NsGna~LtdIkl~v~~PqgWei~Vd~~~I~sL~pge~~tV~ltI~vP~~a~aGdY~i~i~ 466 (513)
T COG1470 389 YRLTITAGE--EKTIRISIENSGNAPLTDIKLTVNGPQGWEIEVDESTIPSLEPGESKTVSLTITVPEDAGAGDYRITIT 466 (513)
T ss_pred EEEEecCCc--cceEEEEEEecCCCccceeeEEecCCccceEEECcccccccCCCCcceEEEEEEcCCCCCCCcEEEEEE
Confidence 344444454 67888999999988765 778899999999999999876668999999999999998766666776666
Q ss_pred EEc
Q 044427 685 WED 687 (734)
Q Consensus 685 ~~~ 687 (734)
-+.
T Consensus 467 ~ks 469 (513)
T COG1470 467 AKS 469 (513)
T ss_pred Eee
Confidence 653
|
|
| >PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors | Back alignment and domain information |
|---|
Probab=86.67 E-value=7 Score=35.48 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=47.7
Q ss_pred EEEEEEEEecCCCCeeEEEEeeC---CCc----eEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE
Q 044427 618 GVFTRTVTNVGSPNSTYTVRPYM---PAS----VSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 618 ~~~~~tv~N~~~~~~ty~~~v~~---~~g----~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
.+.+++|+|.++.+..+.+.+.. ... -.+.++|..+.+ ++|+++.|+| +.....+.+....=+|.++
T Consensus 16 ~~~~i~v~N~~~~~~~vq~~v~~~~~~~~~~~~~~~~vsPp~~~L-~pg~~q~vRv-~~~~~~~~~~E~~yrl~~~ 89 (122)
T PF00345_consen 16 RSASITVTNNSDQPYLVQVWVYDQDDEDEDEPTDPFIVSPPIFRL-EPGESQTVRV-YRGSKLPIDRESLYRLSFR 89 (122)
T ss_dssp SEEEEEEEESSSSEEEEEEEEEETTSTTSSSSSSSEEEESSEEEE-ETTEEEEEEE-EECSGS-SSS-EEEEEEEE
T ss_pred CEEEEEEEcCCCCcEEEEEEEEcCCCcccccccccEEEeCCceEe-CCCCcEEEEE-EecCCCCCCceEEEEEEEE
Confidence 35688999999988888887764 111 257789999999 6899999999 7754444455555566665
|
Many interactive subunits are required to assemble pili, but their assembly only takes place after translocation across the cytoplasmic membrane. Periplasmic chaperones assist pili assembly by binding to the subunits, thereby preventing premature aggregation [, ]. Pili chaperones are structurally, and possibly evolutionarily, related to the immunoglobulin superfamily [, ]: they contain two globular domains, with a topology identical to an immunoglobulin fold. This entry represents the N-terminal domain of pili assembly chaperone, and has a beta-sandwich fold consisting of seven strands in two sheets with a Greek key topology.; GO: 0007047 cellular cell wall organization, 0030288 outer membrane-bounded periplasmic space; PDB: 2CO6_B 2CO7_B 1L4I_B 3GFU_A 3F65_F 3F6L_A 3F6I_A 3GEW_B 3DSN_D 2OS7_B .... |
| >KOG2442 consensus Uncharacterized conserved protein, contains PA domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.20 E-value=2.1 Score=47.29 Aligned_cols=70 Identities=17% Similarity=0.184 Sum_probs=54.9
Q ss_pred CCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc---------ccCcCcceEEeeccchHHHHHHHhcCCC
Q 044427 353 SYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL---------AFSYPLPATLISKENGQDILDYIRSTEY 418 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~---------~~~~~~p~~~i~~~~~~~l~~~~~~~~~ 418 (734)
...+++|+++..|+.+ +..++++||.+.++.|+..+.+ ..+..||+++|+.+++..+......+.+
T Consensus 91 ~~kl~~~~~~v~RGnC~Ft~Ka~~Aq~aGAsaLliin~~~d~~~~~~~~~~~~~dv~IPv~mi~~~~~~~l~~~~~~~~~ 170 (541)
T KOG2442|consen 91 QSKLSGKVALVFRGNCSFTEKAKLAQAAGASALLIINNKKDLLFMPCGNKETSLDVTIPVAMISYSDGRDLNKSTRSNDN 170 (541)
T ss_pred CccccceeEEEecccceeehhhhhhhhcCceEEEEEcCchhhccCCCCCCCccccccceEEEEEhhhHHHHHhhhccCCe
Confidence 3468899999999875 8899999999999999965322 2366899999999999999886665555
Q ss_pred cEEE
Q 044427 419 PIAT 422 (734)
Q Consensus 419 ~~~~ 422 (734)
.++.
T Consensus 171 V~~~ 174 (541)
T KOG2442|consen 171 VELA 174 (541)
T ss_pred EEEE
Confidence 4433
|
|
| >COG1470 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.20 E-value=8.2 Score=42.79 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=52.6
Q ss_pred EEEEEEEEEecCCCCeeEEEEee-CCCceEEEEEcC-----eeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEc
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPY-MPASVSVDVEPQ-----SLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWED 687 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~-~~~g~~v~v~p~-----~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~ 687 (734)
+..+++++.|.+..+..|.+++. .|+|-...++-. +|.+ .+||+++|+|.|.++.....+.|.=.|+-..
T Consensus 285 t~sf~V~IeN~g~~~d~y~Le~~g~pe~w~~~Fteg~~~vt~vkL-~~gE~kdvtleV~ps~na~pG~Ynv~I~A~s 360 (513)
T COG1470 285 TASFTVSIENRGKQDDEYALELSGLPEGWTAEFTEGELRVTSVKL-KPGEEKDVTLEVYPSLNATPGTYNVTITASS 360 (513)
T ss_pred ceEEEEEEccCCCCCceeEEEeccCCCCcceEEeeCceEEEEEEe-cCCCceEEEEEEecCCCCCCCceeEEEEEec
Confidence 67789999999999999999998 688877666543 4556 5899999999999987543444444444443
|
|
| >cd02131 PA_hNAALADL2_like PA_hNAALADL2_like: Protease-associated domain containing proteins like human N-acetylated alpha-linked acidic dipeptidase-like 2 protein (hNAALADL2) | Back alignment and domain information |
|---|
Probab=84.96 E-value=0.76 Score=43.32 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=29.8
Q ss_pred CCcCceEEEEeeC-----CcchhhhccCceEEEEecCCc
Q 044427 354 YKVEGKIVFCESL-----LDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 354 ~~~~gkiv~~~~~-----~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
-+++|||+|+..+ .|..+|+..||+|+|+|.+..
T Consensus 37 V~v~GkIvi~RyG~~~RG~Kv~~A~~~GA~GviIYsDP~ 75 (153)
T cd02131 37 MNVTNQIALLKLGQAPLLYKLSLLEEAGFGGVLLYVDPC 75 (153)
T ss_pred CCccceEEEEeccCcchHHHHHHHHHCCCeEEEEecChh
Confidence 5799999999865 469999999999999999864
|
This group contains various PA domain-containing proteins similar to hNAALADL2. The function of hNAALADL2 is unknown. This gene has been mapped to a chromosomal region associated with Cornelia de Lange syndrome. The significance of the PA domain to hNAALADL2 has not been ascertained. It may be a protein-protein interaction domain. At peptidase active sites, the PA domain may participate in substrate binding and/or promoting conformational changes, which influence the stability and accessibility of the site to substrate. |
| >cd02121 PA_GCPII_like PA_GCPII_like: Protease-associated domain containing protein, glutamate carboxypeptidase II (GCPII)-like | Back alignment and domain information |
|---|
Probab=84.73 E-value=1.3 Score=44.82 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=30.2
Q ss_pred CCCcCceEEEEeeCC-----cchhhhccCceEEEEecCCc
Q 044427 353 SYKVEGKIVFCESLL-----DGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~-----~~~~~~~~Ga~g~i~~n~~~ 387 (734)
..+++|||||+.++. +..+|+.+||+|+|++++..
T Consensus 67 gvdv~GKIvLvr~G~~~~~~Kv~~A~~~GA~gVIiy~Dp~ 106 (220)
T cd02121 67 GIDVKGKIVIARYGGIFRGLKVKNAQLAGAVGVIIYSDPA 106 (220)
T ss_pred CCCCCCeEEEEECCCccHHHHHHHHHHcCCEEEEEEeCch
Confidence 568999999998764 47889999999999999864
|
This group contains various PA domain-containing proteins similar to GCPII including, GCPIII (NAALADase2) and NAALADase L. These proteins belong to the peptidase M28 family. GCPII is also known N-acetylated-alpha-linked acidic dipeptidase (NAALDase1), folate hydrolase or prostate-specific membrane antigen (PSMA). GCPII is found in various human tissues including prostate, small intestine, and the central nervous system. In the brain, GCPII is known as NAALDase1, it functions as a NAALDase hydrolyzing the neuropeptide N-acetyl-L-aspartyl-L-glutamate (alpha-NAAG), to release free glutamate. In the small intestine, GCPII releases the terminal glutamate from poly-gamma-glutamated folates. GCPII (PSMA) is a useful cancer marker; its expression is markedly increased in prostate cancer and in tumor-associated neovasculature. GCPIII hydrolyzes alpha-NAAG with a lower |
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
Probab=83.46 E-value=5.2 Score=44.88 Aligned_cols=57 Identities=12% Similarity=0.193 Sum_probs=49.3
Q ss_pred ceEEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccc
Q 044427 615 PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPK 672 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~ 672 (734)
...-.+++.+.|.++.+.+|+++++..+|..+...++.+++ ++|++.++.|+|.++.
T Consensus 345 ~i~N~Y~~~i~Nk~~~~~~~~l~v~g~~~~~~~~~~~~i~v-~~g~~~~~~v~v~~~~ 401 (434)
T TIGR02745 345 VVENTYTLKILNKTEQPHEYYLSVLGLPGIKIEGPGAPIHV-KAGEKVKLPVFLRTPP 401 (434)
T ss_pred cEEEEEEEEEEECCCCCEEEEEEEecCCCcEEEcCCceEEE-CCCCEEEEEEEEEech
Confidence 34677899999999999999999999999888875458888 6899999999998875
|
Member of this ferredoxin-like protein family are found exclusively in species with an operon encoding the cbb3 type of cytochrome c oxidase (cco-cbb3), and near the cco-cbb3 operon in about half the cases. The cco-cbb3 is found in a variety of proteobacteria and almost nowhere else, and is associated with oxygen use under microaerobic conditions. Some (but not all) of these proteobacteria are also nitrogen-fixing, hence the gene symbol fixG. FixG was shown essential for functional cco-cbb3 expression in Bradyrhizobium japonicum. |
| >PF07718 Coatamer_beta_C: Coatomer beta C-terminal region; InterPro: IPR011710 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=83.19 E-value=8.7 Score=35.82 Aligned_cols=70 Identities=14% Similarity=0.158 Sum_probs=53.3
Q ss_pred ceEEEEEEEEEecCCCC-eeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE
Q 044427 615 PIYGVFTRTVTNVGSPN-STYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE 686 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~-~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~ 686 (734)
++...+.+.+-|..+.. ..-++.......+++.-.|..+++ ++++.++++.++.+.+.. .++.||.|++.
T Consensus 68 q~DIvLDvllvNqT~~tLqNl~vElat~gdLklve~p~~~tL-~P~~~~~i~~~iKVsSte-tGvIfG~I~Yd 138 (140)
T PF07718_consen 68 QYDIVLDVLLVNQTNETLQNLTVELATLGDLKLVERPQPITL-APHGFARIKATIKVSSTE-TGVIFGNIVYD 138 (140)
T ss_pred eeeEEEEEEEEeCChhhhhcEEEEEEecCCcEEccCCCceee-CCCcEEEEEEEEEEEecc-CCEEEEEEEEe
Confidence 45677788888877653 223444444566777778999999 689999999999998866 78999999985
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C-terminal domain of the beta subunit from coatomer proteins (Beta-coat proteins). The C-terminal domain probably adapts the function of the N-terminal IPR002553 from INTERPRO domain. Coatomer protein complex I (COPI)-coated vesicles are involved in transport between the endoplasmic reticulum and the Golgi but also participate in transport from early to late endosomes within the endocytic pathway []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 734 | ||||
| 3vta_A | 621 | Crystal Structure Of Cucumisin, A Subtilisin-Like E | 1e-172 | ||
| 3i6s_A | 649 | Crystal Structure Of The Plant Subtilisin-Like Prot | 5e-98 | ||
| 3afg_A | 539 | Crystal Structure Of Pron-Tk-Sp From Thermococcus K | 4e-11 | ||
| 1yjb_A | 275 | Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant Wit | 3e-07 | ||
| 3eif_A | 936 | 1.9 Angstrom Crystal Structure Of The Active Form O | 1e-06 | ||
| 1sbi_A | 275 | Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, | 2e-06 | ||
| 3f49_S | 266 | Anion-Triggered Engineered Subtilisin Subt_bacam Le | 2e-06 | ||
| 1s01_A | 275 | Large Increases In General Stability For Subtilisin | 3e-06 | ||
| 1aqn_A | 275 | Subtilisin Mutant 8324 Length = 275 | 3e-06 | ||
| 1sue_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mu | 3e-06 | ||
| 1spb_S | 266 | Subtilisin Bpn' Prosegment (77 Residues) Complexed | 3e-06 | ||
| 1sua_A | 266 | Subtilisin Bpn' Length = 266 | 3e-06 | ||
| 1gns_A | 263 | Subtilisin Bpn' Length = 263 | 4e-06 | ||
| 2sni_E | 275 | Structural Comparison Of Two Serine Proteinase-Prot | 4e-06 | ||
| 2sbt_A | 275 | A Comparison Of The Three-Dimensional Structures Of | 4e-06 | ||
| 1dui_A | 266 | Subtilisin Bpn' From Bacillus Amyloliquefaciens, Cr | 4e-06 | ||
| 1ak9_A | 275 | Subtilisin Mutant 8321 Length = 275 | 4e-06 | ||
| 3cnq_S | 266 | Prosubtilisin Substrate Complex Of Subtilisin Subt_ | 5e-06 | ||
| 2sic_E | 275 | Refined Crystal Structure Of The Complex Of Subtili | 6e-06 | ||
| 1s02_A | 275 | Effects Of Engineered Salt Bridges On The Stability | 6e-06 | ||
| 1lw6_E | 281 | Crystal Structure Of The Complex Of Subtilisin Bpn' | 7e-06 | ||
| 1sub_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 8e-06 | ||
| 1gnv_A | 266 | Calcium Independent Subtilisin Bpn' Mutant Length = | 8e-06 | ||
| 1a2q_A | 275 | Subtilisin Bpn' Mutant 7186 Length = 275 | 9e-06 | ||
| 1suc_A | 275 | Calcium-Independent Subtilisin By Design Length = 2 | 9e-06 | ||
| 1c9j_A | 269 | Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A | 1e-05 | ||
| 1ah2_A | 269 | Serine Protease Pb92 From Bacillus Alcalophilus, Nm | 1e-05 | ||
| 1ndu_A | 269 | Bacillus Lentus Subtilisin Variant S101gV104N Lengt | 1e-05 | ||
| 1st3_A | 269 | The Crystal Structure Of The Bacillus Lentus Alkali | 1e-05 | ||
| 1ndq_A | 269 | Bacillus Lentus Subtilisin Length = 269 | 1e-05 | ||
| 3qtl_A | 274 | Structural Basis For Dual-Inhibition Mechanism Of A | 1e-05 | ||
| 1cse_E | 274 | The High-Resolution X-Ray Crystal Structure Of The | 1e-05 | ||
| 1yu6_A | 275 | Crystal Structure Of The Subtilisin Carlsberg:omtky | 2e-05 | ||
| 4gi3_A | 275 | Crystal Structure Of Greglin In Complex With Subtil | 2e-05 | ||
| 1c3l_A | 274 | Subtilisin-Carlsberg Complexed With Xenon (8 Bar) L | 2e-05 | ||
| 1scn_E | 276 | Inactivation Of Subtilisin Carlsberg By N-(Tert-But | 2e-05 | ||
| 1ubn_A | 275 | Selenosubtilisin Bpn Length = 275 | 2e-05 | ||
| 1v5i_A | 275 | Crystal Structure Of Serine Protease Inhibitor Poia | 2e-05 | ||
| 3lpd_A | 339 | Crystal Structure Of A Subtilisin-Like Protease Len | 3e-05 | ||
| 3lpc_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 3e-05 | ||
| 3lpa_A | 340 | Crystal Structure Of A Subtilisin-Like Protease Len | 3e-05 | ||
| 1c9n_A | 269 | Bacillus Lentus Substilisin Variant (Ser 87) K27rV1 | 3e-05 | ||
| 1iav_A | 269 | Structure On Native (Asn 87) Subtilisin From Bacill | 4e-05 | ||
| 1q5p_A | 269 | S156e/s166d Variant Of Bacillus Lentus Subtilisin L | 4e-05 | ||
| 1c9m_A | 269 | Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I L | 4e-05 | ||
| 1st2_A | 275 | The Three-Dimensional Structure Of Bacillus Amyloli | 4e-05 | ||
| 1sel_A | 274 | Crystal Structure Of Selenosubtilisin At 2.0-Angstr | 4e-05 | ||
| 1mee_A | 275 | The Complex Between The Subtilisin From A Mesophili | 5e-05 | ||
| 1wsd_A | 269 | Alkaline M-Protease Form I Crystal Strcuture Length | 8e-05 | ||
| 2gko_A | 309 | S41 Psychrophilic Protease Length = 309 | 1e-04 | ||
| 2ixt_A | 310 | Sphericase Length = 310 | 1e-04 | ||
| 2b6n_A | 278 | The 1.8 A Crystal Structure Of A Proteinase K Like | 3e-04 | ||
| 1ea7_A | 310 | Sphericase Length = 310 | 3e-04 | ||
| 4dww_A | 275 | Crystal Structure Of Nattokinase From Bacillus Subt | 4e-04 | ||
| 1scj_A | 275 | Crystal Structure Of Subtilisin-Propeptide Complex | 5e-04 | ||
| 1wmd_A | 434 | Crystal Structure Of Alkaline Serine Protease Kp-43 | 6e-04 | ||
| 1bh6_A | 274 | Subtilisin Dy In Complex With The Synthetic Inhibit | 7e-04 | ||
| 3vhq_A | 398 | Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa- | 8e-04 | ||
| 2z30_A | 320 | Crystal Structure Of Complex Form Between Mat-Tk-Su | 9e-04 | ||
| 2zwp_A | 398 | Crystal Structure Of Ca3 Site Mutant Of Pro-S324a L | 9e-04 | ||
| 2zwo_A | 398 | Crystal Structure Of Ca2 Site Mutant Of Pro-S324a L | 9e-04 | ||
| 2e1p_A | 398 | Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | 9e-04 | ||
| 2z2z_A | 395 | Crystal Structure Of Unautoprocessed Form Of Tk-sub | 9e-04 |
| >pdb|3VTA|A Chain A, Crystal Structure Of Cucumisin, A Subtilisin-Like Endoprotease From Cucumis Melo L Length = 621 | Back alignment and structure |
|
| >pdb|3I6S|A Chain A, Crystal Structure Of The Plant Subtilisin-Like Protease Sbt3 Length = 649 | Back alignment and structure |
|
| >pdb|3AFG|A Chain A, Crystal Structure Of Pron-Tk-Sp From Thermococcus Kodakaraensis Length = 539 | Back alignment and structure |
|
| >pdb|1YJB|A Chain A, Subtilisin Bpn' 8397+1 (E.C. 3.4.21.14) (Mutant With Met 50 Replaced By Phe, Asn 76 Replaced By Asp, Gly 169 Replaced By Ala, Gln 206 Replaced By Cys, Asn 218 Replaced By Ser And Lys 256 Replaced By Tyr) (M50f, N76d, G169a, Q206c, N218s, And K256y) In 35% Dimethylformamide Length = 275 | Back alignment and structure |
|
| >pdb|3EIF|A Chain A, 1.9 Angstrom Crystal Structure Of The Active Form Of The C5a Peptidase From Streptococcus Pyogenes (Scpa) Length = 936 | Back alignment and structure |
|
| >pdb|1SBI|A Chain A, Subtilisin Bpn' 8397 (E.C. 3.4.21.14) Mutant (M50f, N76d, G169a, Q206c, N218s) Length = 275 | Back alignment and structure |
|
| >pdb|3F49|S Chain S, Anion-Triggered Engineered Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|1S01|A Chain A, Large Increases In General Stability For Subtilisin Bpn(Prime) Through Incremental Changes In The Free Energy Of Unfolding Length = 275 | Back alignment and structure |
|
| >pdb|1AQN|A Chain A, Subtilisin Mutant 8324 Length = 275 | Back alignment and structure |
|
| >pdb|1SUE|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1SPB|S Chain S, Subtilisin Bpn' Prosegment (77 Residues) Complexed With A Mutant Subtilisin Bpn' (266 Residues). Crystal Ph 4.6. Crystallization Temperature 20 C Diffraction Temperature- 160 C Length = 266 | Back alignment and structure |
|
| >pdb|1SUA|A Chain A, Subtilisin Bpn' Length = 266 | Back alignment and structure |
|
| >pdb|1GNS|A Chain A, Subtilisin Bpn' Length = 263 | Back alignment and structure |
|
| >pdb|2SNI|E Chain E, Structural Comparison Of Two Serine Proteinase-Protein Inhibitor Complexes. Eglin-C-Subtilisin Carlsberg And Ci-2- Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|2SBT|A Chain A, A Comparison Of The Three-Dimensional Structures Of Subtilisin Bpn And Subtilisin Novo Length = 275 | Back alignment and structure |
|
| >pdb|1DUI|A Chain A, Subtilisin Bpn' From Bacillus Amyloliquefaciens, Crystal Growth Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1AK9|A Chain A, Subtilisin Mutant 8321 Length = 275 | Back alignment and structure |
|
| >pdb|3CNQ|S Chain S, Prosubtilisin Substrate Complex Of Subtilisin Subt_bacam Length = 266 | Back alignment and structure |
|
| >pdb|2SIC|E Chain E, Refined Crystal Structure Of The Complex Of Subtilisin Bpn' And Streptomyces Subtilisin Inhibitor At 1.8 Angstroms Resolution Length = 275 | Back alignment and structure |
|
| >pdb|1S02|A Chain A, Effects Of Engineered Salt Bridges On The Stability Of Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|1LW6|E Chain E, Crystal Structure Of The Complex Of Subtilisin Bpn' With Chymotrypsin Inhibitor 2 At 1.5 Angstrom Resolution Length = 281 | Back alignment and structure |
|
| >pdb|1SUB|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1GNV|A Chain A, Calcium Independent Subtilisin Bpn' Mutant Length = 266 | Back alignment and structure |
|
| >pdb|1A2Q|A Chain A, Subtilisin Bpn' Mutant 7186 Length = 275 | Back alignment and structure |
|
| >pdb|1SUC|A Chain A, Calcium-Independent Subtilisin By Design Length = 275 | Back alignment and structure |
|
| >pdb|1C9J|A Chain A, Bacillus Lentus Subtilisin K27rN87SV104YN123ST274A Variant Length = 269 | Back alignment and structure |
|
| >pdb|1AH2|A Chain A, Serine Protease Pb92 From Bacillus Alcalophilus, Nmr, 18 Structures Length = 269 | Back alignment and structure |
|
| >pdb|1NDU|A Chain A, Bacillus Lentus Subtilisin Variant S101gV104N Length = 269 | Back alignment and structure |
|
| >pdb|1ST3|A Chain A, The Crystal Structure Of The Bacillus Lentus Alkaline Protease, Subtilisin Bl, At 1.4 Angstroms Resolution Length = 269 | Back alignment and structure |
|
| >pdb|1NDQ|A Chain A, Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|3QTL|A Chain A, Structural Basis For Dual-Inhibition Mechanism Of A Non-Classical Kazal-Type Serine Protease Inhibitor From Horseshoe Crab In Complex With Subtilisin Length = 274 | Back alignment and structure |
|
| >pdb|1CSE|E Chain E, The High-Resolution X-Ray Crystal Structure Of The Complex Formed Between Subtilisin Carlsberg And Eglin C, An Elastase Inhibitor From The Leech Hirudo Medicinalis. Structural Analysis, Subtilisin Structure And Interface Geometry Length = 274 | Back alignment and structure |
|
| >pdb|1YU6|A Chain A, Crystal Structure Of The Subtilisin Carlsberg:omtky3 Complex Length = 275 | Back alignment and structure |
|
| >pdb|4GI3|A Chain A, Crystal Structure Of Greglin In Complex With Subtilisin Length = 275 | Back alignment and structure |
|
| >pdb|1C3L|A Chain A, Subtilisin-Carlsberg Complexed With Xenon (8 Bar) Length = 274 | Back alignment and structure |
|
| >pdb|1SCN|E Chain E, Inactivation Of Subtilisin Carlsberg By N-(Tert-Butoxycarbonyl-Alanyl- Prolyl-Phenylalanyl)-O-Benzol Hydroxylamine: Formation Of Covalent Enzyme-Inhibitor Linkage In The Form Of A Carbamate Derivative Length = 276 | Back alignment and structure |
|
| >pdb|1UBN|A Chain A, Selenosubtilisin Bpn Length = 275 | Back alignment and structure |
|
| >pdb|1V5I|A Chain A, Crystal Structure Of Serine Protease Inhibitor Poia1 In Complex With Subtilisin Bpn' Length = 275 | Back alignment and structure |
|
| >pdb|3LPD|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 339 | Back alignment and structure |
|
| >pdb|3LPC|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|3LPA|A Chain A, Crystal Structure Of A Subtilisin-Like Protease Length = 340 | Back alignment and structure |
|
| >pdb|1C9N|A Chain A, Bacillus Lentus Substilisin Variant (Ser 87) K27rV104YN123ST274A Length = 269 | Back alignment and structure |
|
| >pdb|1IAV|A Chain A, Structure On Native (Asn 87) Subtilisin From Bacillus Lentus Length = 269 | Back alignment and structure |
|
| >pdb|1Q5P|A Chain A, S156e/s166d Variant Of Bacillus Lentus Subtilisin Length = 269 | Back alignment and structure |
|
| >pdb|1C9M|A Chain A, Bacillus Lentus Subtilsin (Ser 87) N76dS103AV104I Length = 269 | Back alignment and structure |
|
| >pdb|1ST2|A Chain A, The Three-Dimensional Structure Of Bacillus Amyloliquefaciens Subtilisin At 1.8 Angstroms And An Analysis Of The Structural Consequences Of Peroxide Inactivation Length = 275 | Back alignment and structure |
|
| >pdb|1SEL|A Chain A, Crystal Structure Of Selenosubtilisin At 2.0-Angstroms Resolution Length = 274 | Back alignment and structure |
|
| >pdb|1MEE|A Chain A, The Complex Between The Subtilisin From A Mesophilic Bacterium And The Leech Inhibitor Eglin-C Length = 275 | Back alignment and structure |
|
| >pdb|1WSD|A Chain A, Alkaline M-Protease Form I Crystal Strcuture Length = 269 | Back alignment and structure |
|
| >pdb|2GKO|A Chain A, S41 Psychrophilic Protease Length = 309 | Back alignment and structure |
|
| >pdb|2IXT|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|2B6N|A Chain A, The 1.8 A Crystal Structure Of A Proteinase K Like Enzyme From A Psychrotroph Serratia Species Length = 278 | Back alignment and structure |
|
| >pdb|1EA7|A Chain A, Sphericase Length = 310 | Back alignment and structure |
|
| >pdb|4DWW|A Chain A, Crystal Structure Of Nattokinase From Bacillus Subtilis Natto Length = 275 | Back alignment and structure |
|
| >pdb|1SCJ|A Chain A, Crystal Structure Of Subtilisin-Propeptide Complex Length = 275 | Back alignment and structure |
|
| >pdb|1WMD|A Chain A, Crystal Structure Of Alkaline Serine Protease Kp-43 From Bacillus Sp. Ksm-Kp43 (1.30 Angstrom, 100 K) Length = 434 | Back alignment and structure |
|
| >pdb|1BH6|A Chain A, Subtilisin Dy In Complex With The Synthetic Inhibitor N- Benzyloxycarbonyl-Ala-Pro-Phe-Chloromethyl Ketone Length = 274 | Back alignment and structure |
|
| >pdb|3VHQ|A Chain A, Crystal Structure Of The Ca6 Site Mutant Of Pro-Sa-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z30|A Chain A, Crystal Structure Of Complex Form Between Mat-Tk-Subtilisin And Tk- Propeptide Length = 320 | Back alignment and structure |
|
| >pdb|2ZWP|A Chain A, Crystal Structure Of Ca3 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2ZWO|A Chain A, Crystal Structure Of Ca2 Site Mutant Of Pro-S324a Length = 398 | Back alignment and structure |
|
| >pdb|2E1P|A Chain A, Crystal Structure Of Pro-Tk-Subtilisin Length = 398 | Back alignment and structure |
|
| >pdb|2Z2Z|A Chain A, Crystal Structure Of Unautoprocessed Form Of Tk-subtilisin Soaked By 10mm Cacl2 Length = 395 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} Length = 621 | Back alignment and structure |
|---|
Score = 718 bits (1855), Expect = 0.0
Identities = 331/631 (52%), Positives = 424/631 (67%), Gaps = 13/631 (2%)
Query: 75 TTRSWDFMGFSKGKLSSSQEGS-VIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-TGA 132
TTRSWDF+GF SQ S +++G+LDTGIWPES SF+D+G SPPP KWKG C T
Sbjct: 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSN 60
Query: 133 NFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTA 192
NF CN KIIGAR Y+ D + PRD+ GHGTHT+STAAG V A+ YGL GTA
Sbjct: 61 NFRCNRKIIGARSYHIGRPISPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTA 120
Query: 193 RGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIG 252
RGGVP ARI+ YKVCW+DGC+ DILAA+DDAIADGVDIIS+S+G P YF D IAIG
Sbjct: 121 RGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDAIAIG 180
Query: 253 SFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312
SFHA++ GILTSNSAGN GP+ ++ ++ +PW L+VAAS++DRKFV Q +GNG ++ G+S
Sbjct: 181 SFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240
Query: 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDI 372
IN+F + YPL+ G D N G + +RFC ++N ++GKIV CE+ +
Sbjct: 241 INTF--DNQYYPLVSGRDIPN--TGFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEF 296
Query: 373 LA-VNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD 431
++G ++ S D A SYPLP++++ + L YI S P ATI T +
Sbjct: 297 FKSLDGAAGVLMTSNTRDYADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILN 356
Query: 432 AMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISG 491
A AP VVSFSSRGPN T D++KPDI+ PGV+ILA+W VAP R+ FNIISG
Sbjct: 357 ASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPSVAPVG---GIRRNTLFNIISG 413
Query: 492 TSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
TSMSCPH +G A YVK +P WSP++IKSALMTTA M++R EFAYGSGH+NP +A
Sbjct: 414 TSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLKA 473
Query: 552 IDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIE 611
+ PGLVYDA E DYV FLC QGYNT +R+ITGD S+ C S GR WDLNYPSF L++
Sbjct: 474 VRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYSA-CTSGNTGRVWDLNYPSFGLSVS 532
Query: 612 DGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGP 671
Q F RT+T+V STY P +++ V P LSF+ +G++KSFT+ V G
Sbjct: 533 PSQTFNQYFNRTLTSVAPQASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS 592
Query: 672 KIAQQPIMSGAIVWEDGVHQVRSPVVIYNIL 702
+ ++S ++VW DGVH VRSP+ I +++
Sbjct: 593 --IKGFVVSASLVWSDGVHYVRSPITITSLV 621
|
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* Length = 649 | Back alignment and structure |
|---|
Score = 651 bits (1679), Expect = 0.0
Identities = 243/660 (36%), Positives = 351/660 (53%), Gaps = 46/660 (6%)
Query: 75 TTRSWDFMGFSKGK---LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGIC-T 130
TT + DF+ + +S VI+ +LD+GIWPESASF D G+ P +WKGIC
Sbjct: 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKP 60
Query: 131 GANFT---CNNKIIGARYYN----SENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHAS 183
G F CN K+IGA Y+N + + +S RD++GHGTH +S AG S
Sbjct: 61 GTQFNASMCNRKLIGANYFNKGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVS 120
Query: 184 YYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFE 243
++G A GTARG P AR+++YK +++G T+D++AA D A+ADGVD+IS+S G F
Sbjct: 121 HFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFI-P 179
Query: 244 YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLG 303
+ED I+I SF AM G+L S SAGN GP S++N +PW L VA+ DR F LG
Sbjct: 180 LYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239
Query: 304 NGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFC 363
NG+ G S+ P+I+ ++ S E IV C
Sbjct: 240 NGLKIRGWSLFPARAFVRDSPVIYNKTLSDCS----------SEELLSQVENPENTIVIC 289
Query: 364 ESLLDGSD----ILAVNGLGTIMA-DSVFTDLAFSYPLPATLISKENGQDILDYIRSTEY 418
+ D SD I I + + ++P P +++K+ G+ +++Y++++
Sbjct: 290 DDNGDFSDQMRIITRARLKAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVT 349
Query: 419 PIATIMFGETWKDAM-APKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPS-L 476
P ATI F ET+ D AP V + S+RGP+ + I KPDI APGV ILA++ P + +
Sbjct: 350 PTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKPDILAPGVLILAAYPPNVFATSI 409
Query: 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQED 536
S + + SGTSM+ PHA+G AA +KAAHP WSPS+I+SA+MTTA +D+ ++
Sbjct: 410 GTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRKPI 469
Query: 537 LE---------FAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNS 587
+ G+GH++P +A+DPGLVYDAT DYVN LC + + I +
Sbjct: 470 KDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSS- 528
Query: 588 SVCNSTEPGRAWDLNYPSFSLAIEDGQPI---YGVFTRTVTNVGSPNSTYTVRPYMPASV 644
+ + DLNYPSF F RTVTNVG +TY + P +
Sbjct: 529 --ASHNCSNPSADLNYPSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNS 586
Query: 645 SVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVW--EDGVHQVRSPVVIYNIL 702
++ V PQ L F E++S+T+ + Q G+I W ++G H VRSP+V I+
Sbjct: 587 TISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNVGSITWVEQNGNHSVRSPIVTSPII 646
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* Length = 926 | Back alignment and structure |
|---|
Score = 434 bits (1118), Expect = e-140
Identities = 112/673 (16%), Positives = 206/673 (30%), Gaps = 106/673 (15%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFT--------CNNKIIGARYYNS 148
++ ++D G ++ + + K A N+K+ Y+
Sbjct: 19 TVVAVIDAGFDKNHEAWRLTDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHDYSK 78
Query: 149 ENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCW 208
+ + HGTH S +G A G +P A++ + +V
Sbjct: 79 DG--------KTAVDQEHGTHVSGILSGN----APSETKEPYRLEGAMPEAQLLLMRVEI 126
Query: 209 SDGCAT--ADILAAFDDAIADGVDIISVSLGSD-FPFEYFEDPIAIGSFHAMKYGILTSN 265
+G A + A DAI G +I++S G+ + D +A G+
Sbjct: 127 VNGLADYARNYAQAIRDAINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVT 186
Query: 266 SAGNSGPDPYSVS---NFAPWTLTVAASSIDRKFVAQA-VLGNGITYPGLSINSFDLNGI 321
SAGN P V + + A + + + + D
Sbjct: 187 SAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTVASYSPDKQLTETVRVKTADQQDK 246
Query: 322 SYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCE-----SLLDGSDILAVN 376
P++ A + V+GKI E +
Sbjct: 247 EMPVLSTNRFEP--NKAYDYAYANRGTKEDDFKDVKGKIALIERGDIDFKDKIAKAKKAG 304
Query: 377 GLGTIMADSVFTDLAFSYP----LPATLISKENGQDILDYIRSTEYPIATIMFGETWKDA 432
+G ++ D+ P +PA IS+++G + D + T AT T
Sbjct: 305 AVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKDNPQKTITFNATPKVLPTAS-- 362
Query: 433 MAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGT 492
K+ FSS G +KPDI APG DIL+S + + +SGT
Sbjct: 363 -GTKLSRFSSWGLTAD--GNIKPDIAAPGQDILSSVANN-------------KYAKLSGT 406
Query: 493 SMSCPHASGSAAYVKAAHPNWSP--------SSIKSALMTTAYVMDSRKQEDLE--FAYG 542
SMS P +G ++ + P K LM++A + ++ G
Sbjct: 407 SMSAPLVAGIMGLLQKQYETQYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQG 466
Query: 543 SGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQ-ITGDNSSVCNSTEPGRAWDL 601
+G ++ +A + T+ D + + + N S + +L
Sbjct: 467 AGAVDAKKASAATMY--VTDKDNTSSKVHLNNVSDKFEVTVNVHNKS-------DKPQEL 517
Query: 602 NYPSFSLAIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQ 661
Y + TV + + P V + Q ++ A
Sbjct: 518 YYQA-----------------TVQTDKVDGKHFALAP----KVLYETSWQKITIPA-NSS 555
Query: 662 KSFTVKVTGPKIA--------QQPIMSGAIVWEDGVHQVRSPVVIYNILPGAVHSSDSMP 713
K TV + + + + G + ++ + + Y G + ++
Sbjct: 556 KQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFGNLSALE 615
Query: 714 QKNQKFKGPSMYT 726
+ K S Y
Sbjct: 616 KPIYDSKDGSSYY 628
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 110 bits (276), Expect = 7e-26
Identities = 89/473 (18%), Positives = 157/473 (33%), Gaps = 68/473 (14%)
Query: 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYN 147
LS SQ G+ I ++D+G N TG N +
Sbjct: 15 VLSDSQAGNRTICIIDSGYDRSHNDLNAN-----------NVTGTNNSGTG--------- 54
Query: 148 SENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVC 207
+++ P ++ HGTH + T A A+ G+ G NA I + KV
Sbjct: 55 --------NWYQPGNNNAHGTHVAGTIAAI----ANNEGVV-GVMPN--QNANIHIVKVF 99
Query: 208 WSDGCA-TADILAAFDDAI-ADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSN 265
G ++ ++AA D + + G +++++SLG + + G+L
Sbjct: 100 NEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLLIA 155
Query: 266 SAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNG--ITYPGLSINSFDLNGISY 323
+AGN+G YS ++VAA + A + + I+ PG +I S G
Sbjct: 156 AAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILSTVTVGEGR 215
Query: 324 PLIWGGDAANYSAGA---NPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380
+Y + + + + A E ++G+ N
Sbjct: 216 LADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANK 275
Query: 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSF 440
I + SYP + ++ + P
Sbjct: 276 ICLVERVGNQGSSYP----------EINSTKACKTAGAKGIIVYSNSALPGLQNP--FLV 323
Query: 441 SSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHAS 500
+ + ++ LA + S + + + +GTSM+ PH S
Sbjct: 324 DANSDITVPS------VSVDRATGLALKA-KLGQSTTVSNQGNQDYEYYNGTSMATPHVS 376
Query: 501 GSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
G A V + HP S S +++AL TA + +++ G G IN A
Sbjct: 377 GVATLVWSYHPECSASQVRAALNATADDLSVAGRDN---QTGYGMINAVAAKA 426
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* Length = 441 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 9e-06
Identities = 24/197 (12%), Positives = 44/197 (22%), Gaps = 21/197 (10%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
+FS + +I+ PG IL++ ++ I G S
Sbjct: 188 AFSQYTD--------QVEISGPGEAILSTV---------TVGEGRLADITIGGQSYFSNG 230
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVY 558
+ SA A + +
Sbjct: 231 VVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANKICLVERVGNQGSSYP 290
Query: 559 DATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYG 618
+ G I+ + + N D+ PS S+ G +
Sbjct: 291 EINSTKACK---TAGAKGIIVYSNSA-LPGLQNPFLVDANSDITVPSVSVDRATGLALKA 346
Query: 619 VFTRTVTNVGSPNSTYT 635
++ T N Y
Sbjct: 347 KLGQSTTVSNQGNQDYE 363
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 108 bits (271), Expect = 2e-24
Identities = 47/226 (20%), Positives = 84/226 (37%), Gaps = 28/226 (12%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
V +++SR P + APG I + P +++GTSM+
Sbjct: 418 NVYTWTSRDPCIDGG--QGVTVCAPGGAIAS-----VPQFTMS------KSQLMNGTSMA 464
Query: 496 CPHASGSAA----YVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQA 551
PH +G+ A +K + +SP SIK A+ TA + FA G G +N +A
Sbjct: 465 APHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYVDP----FAQGHGLLNVEKA 520
Query: 552 IDPGLVYDATEVDYVNFLCKQGYNTT---IIRQITGDNSSVCNSTEPGRAWDLNYPSFSL 608
+ + ++ + + F + G N +RQ NS N ++
Sbjct: 521 FEHLTEHRQSKDNMLRFSVRVGNNADKGIHLRQGVQRNSIDYNVYIEPIFYNDKEADPKD 580
Query: 609 AIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLS 654
+ + ++ G+ + Y S++V V+P L
Sbjct: 581 KFNFNVRLNLIASQPWVQCGA----FLDLSYGTRSIAVRVDPTGLQ 622
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} Length = 1354 | Back alignment and structure |
|---|
Score = 86.4 bits (213), Expect = 2e-17
Identities = 38/180 (21%), Positives = 60/180 (33%), Gaps = 24/180 (13%)
Query: 144 RYYNSENIY-EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARIS 202
S N++ E S HGTH SS A+G + G PNA+I
Sbjct: 249 FLSISVNVHDEGNVLEVVGMSSPHGTHVSSIASGNH---------SSRDVDGVAPNAKIV 299
Query: 203 MYKVCWSDGC---ATADILAAFDDAI-----ADGVDIISVSLGSDFPFEYFEDPIAIGSF 254
+ ++ A + +D+I++S G + + +
Sbjct: 300 SMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNE 359
Query: 255 HAMKYGILTSNSAGNSGPDPYSVSNFA----PWTLTVAASSIDRKFVAQAVLGNGITYPG 310
KYG++ SAGN GP +V P + V A + +A PG
Sbjct: 360 VVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAY--VSPQMMEAEYAMREKLPG 417
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 3e-24
Identities = 59/215 (27%), Positives = 92/215 (42%), Gaps = 17/215 (7%)
Query: 439 SFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCP 497
FSSRGP T D LKP++ APG I+A+ + + GT+M+ P
Sbjct: 311 DFSSRGP---TADNRLKPEVVAPGNWIIAAR----ASGTSMGQPINDYYTAAPGTAMATP 363
Query: 498 HASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLV 557
H +G AA + AHP+W+P +K+AL+ TA ++ + D AYG+G +N +A
Sbjct: 364 HVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEIAD--IAYGAGRVNAYKAAYYDNY 421
Query: 558 YDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIY 617
T YV+ Q + TI G ++ G DL + D
Sbjct: 422 AKLTFTGYVSNKGSQSHQFTISG--AGFVTATLYWDNSGSDLDLYLYDPNGNQVDYSY-T 478
Query: 618 GVFTRTVTNVGSPNS-TYTVRPYM---PASVSVDV 648
+ +P + T+T++ A+ VDV
Sbjct: 479 AYYGFEKVGYYNPTAGTWTIKVVSYSGSANYQVDV 513
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} Length = 539 | Back alignment and structure |
|---|
Score = 87.2 bits (216), Expect = 4e-18
Identities = 67/337 (19%), Positives = 112/337 (33%), Gaps = 87/337 (25%)
Query: 39 RSFNGFAAKLTDEEVARF-----------SETEGVISVIPNHKLK--------------I 73
A K+ +++ ++ GV + ++ +K +
Sbjct: 67 HIIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQV 126
Query: 74 HTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGAN 133
T W+ G + IG++DTGI K + +
Sbjct: 127 MATNMWNLGYDGSG---------ITIGIIDTGIDASHPDLQGK-----------VIGWVD 166
Query: 134 FTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTAR 193
F +P D GHGTH +S AAG A+ G +G A
Sbjct: 167 FVNGKT-------------------TPYDDNGHGTHVASIAAGTG---AASNGKYKGMA- 203
Query: 194 GGVPNARISMYKVCWSDG-CATADILA----AFDDAIADGVDIISVSLGSDFPFEYFEDP 248
P A++ KV G + +DI+ A + G+ +I++SLGS + D
Sbjct: 204 ---PGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQSSDG-TDS 259
Query: 249 IAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFA--PWTLTVAASSIDRKF--------VA 298
++ +A G++ +AGNSGP+ Y+V + A +TV A A
Sbjct: 260 LSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKYDVITDFSSRGPTA 319
Query: 299 QAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYS 335
L + PG I + +G S
Sbjct: 320 DNRLKPEVVAPGNWIIAARASGTSMGQPINDYYTAAP 356
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 6e-20
Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 31/117 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS GP + D+ APGV I ++ P + + +GTSM+ PH
Sbjct: 188 SFSSVGP--------ELDVMAPGVSIQSTL---------PGNK----YGAYNGTSMASPH 226
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDL--EFAYGSGHINPAQAID 553
+G+AA + + HPNW+ + ++S+L T L F YG G IN A
Sbjct: 227 VAGAAALILSKHPNWTNTQVRSSLENTT--------TKLGDSFYYGKGLINVQAAAQ 275
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... Length = 281 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-16
Identities = 42/224 (18%), Positives = 74/224 (33%), Gaps = 58/224 (25%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
+I V + ++D+GI G G
Sbjct: 10 QIKAPALHSQGYTGSN---------VKVAVIDSGIDSSHPDLKVAG-------------G 47
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
A+ + + + +D+ HGTH + T A G+A
Sbjct: 48 ASMVPS------------------ETNPFQDNNSHGTHVAGTVAALN-NSIGVLGVA--- 85
Query: 192 ARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA 250
P+A + KV +DG + I+ + AIA+ +D+I++SLG + +
Sbjct: 86 -----PSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGSAALKAAVD 140
Query: 251 IGSFHAMKYGILTSNSAGNSGPDPYSVSNF----APWTLTVAAS 290
A+ G++ +AGN G S + P + V A
Sbjct: 141 ----KAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAV 180
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 89.1 bits (222), Expect = 9e-20
Identities = 34/116 (29%), Positives = 55/116 (47%), Gaps = 31/116 (26%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFSS G + ++ APG + +++ P + ++ ++GTSM+ PH
Sbjct: 187 SFSSVGA--------ELEVMAPGAGVYSTY----PTN---------TYATLNGTSMASPH 225
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDL--EFAYGSGHINPAQAI 552
+G+AA + + HPN S S +++ L +TA L F YG G IN A
Sbjct: 226 VAGAAALILSKHPNLSASQVRNRLSSTA--------TYLGSSFYYGKGLINVEAAA 273
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... Length = 274 | Back alignment and structure |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 51/265 (19%), Positives = 85/265 (32%), Gaps = 64/265 (24%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
I + V + +LDTGI N G G
Sbjct: 10 LIKADKVQAQGFKGAN---------VKVAVLDTGIQASHPDLNVVG-------------G 47
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
A+F D GHGTH + T A G
Sbjct: 48 ASFVAGEA-------------------YNTDGNGHGTHVAGTVAAL--------DNTTGV 80
Query: 192 ARGGV-PNARISMYKVCWSDGCAT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPI 249
GV P+ + KV S G + + I++ + A +G+D+I++SLG + +
Sbjct: 81 L--GVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAV 138
Query: 250 AIGSFHAMKYGILTSNSAGNSGPDPYSVSNF----APWTLTVAASSIDRKFVAQAVLGNG 305
+A G++ +AGNSG + + + V A + + + +G
Sbjct: 139 D----NAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAE 194
Query: 306 ITY--PGLSINSFDLNGISYPLIWG 328
+ PG + S +Y + G
Sbjct: 195 LEVMAPGAGVYSTYPTN-TYATLNG 218
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 2e-19
Identities = 48/237 (20%), Positives = 77/237 (32%), Gaps = 21/237 (8%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASW-----SPVAPPSLDPEDTRSVSFNIISGTS 493
FSSR + APGV IL++ + + T +++ GTS
Sbjct: 330 GFSSRSD--------GVSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTS 381
Query: 494 MSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
M+ PH +G A + PN P I+ L TA+ + + G G + A+
Sbjct: 382 MAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGWDH---DTGYGLVKLDAALQ 438
Query: 554 PGLVYDAT----EVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEP-GRAWDLNYPSFSL 608
L +V + G T + + + S T P G A + S +
Sbjct: 439 GPLPTQGGVEEFQVVVTDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGTY 498
Query: 609 AIEDGQPIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFT 665
I G P + + S Y + M +S A +F
Sbjct: 499 DIFVGGPDHWDRALAPYDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFN 555
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 65.5 bits (159), Expect = 4e-11
Identities = 40/256 (15%), Positives = 75/256 (29%), Gaps = 53/256 (20%)
Query: 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT 155
++I+ ++DTG+ + + G + ++
Sbjct: 155 NIIVAVVDTGVDGTHPDLEGQ-----------VIAGYRPAFDEELPAGT----------- 192
Query: 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCA-- 213
GTH + T A + +G G P A+I +
Sbjct: 193 ---DSSYGGSAGTHVAGTIAAK--------KDGKGIV-GVAPGAKIMPIVIFDDPALVGG 240
Query: 214 -----TADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAG 268
+ A A G +++ S G ++ +AM++G++ SAG
Sbjct: 241 NGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAFD----YAMEHGVVMVVSAG 296
Query: 269 NSGPDPYSVSNFA--PWTLTVAASSIDRKFVAQAVLGN-----GITYPGLSINSFDLNGI 321
N+ D A P + VAA A + + PG++I S
Sbjct: 297 NNTSDS-HHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILSTVPGED 355
Query: 322 SYPLIWGGDAANYSAG 337
S + + G
Sbjct: 356 SIGYEGHNENVPATNG 371
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 87.6 bits (218), Expect = 2e-19
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 27/114 (23%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS G DI APGV++ +++ ++ ++GTSM+ PH
Sbjct: 182 SFSQYGA--------GLDIVAPGVNVQSTY-------------PGSTYASLNGTSMATPH 220
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
+G+AA VK +P+WS I++ L TA YGSG +N A
Sbjct: 221 VAGAAALVKQKNPSWSNVQIRNHLKNTA------TSLGSTNLYGSGLVNAEAAT 268
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* Length = 269 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 37/144 (25%), Positives = 58/144 (40%), Gaps = 16/144 (11%)
Query: 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGV-PNARISMYKVCWSDGC 212
V S +D GHGTH + T A + G GV P+A + KV + G
Sbjct: 50 VPGEPSTQDGNGHGTHVAGTIAAL--------NNSIGVL--GVAPSAELYAVKVLGASGS 99
Query: 213 AT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSG 271
+ + I + A +G+ + ++SLGS P E + A G+L ++GNSG
Sbjct: 100 GSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVN----SATSRGVLVVAASGNSG 155
Query: 272 PDPYSVSNFAPWTLTVAASSIDRK 295
S + V A+ +
Sbjct: 156 AGSISYPARYANAMAVGATDQNNN 179
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 88.1 bits (219), Expect = 3e-19
Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 17/92 (18%)
Query: 439 SFSSRGP----NPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSM 494
+SSRG + +I+APG + ++W +N ISGTSM
Sbjct: 205 DYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTW----YNG---------GYNTISGTSM 251
Query: 495 SCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
+ PH SG AA + A +P+ S + ++S L A
Sbjct: 252 ATPHVSGLAAKIWAENPSLSNTQLRSNLQERA 283
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* Length = 310 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 2e-15
Identities = 52/231 (22%), Positives = 74/231 (32%), Gaps = 56/231 (24%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
I+ + G + I +LDTG+ + +
Sbjct: 12 AIYNNDTLTSTTGGSG---------INIAVLDTGVNTSHPDLVNN-----------VEQC 51
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
+FT I S D GHGTH + TA G ++
Sbjct: 52 KDFTGATTPINN---------------SCTDRNGHGTHVAGTALAD--------GGSDQA 88
Query: 192 ARGGV-PNARISMYKVCWSDG-CATADILAAFDDAIADGV-----DIISVSLGSDFPFEY 244
GV P+A + YKV G + DI AA A IIS+SLGS
Sbjct: 89 GIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSANNSL 148
Query: 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSN--FAPWTLTVAASSID 293
+ +A G+L +AGNSG ++ P + VAA
Sbjct: 149 ISSAVN----YAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENV 195
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 85.0 bits (210), Expect = 1e-17
Identities = 42/239 (17%), Positives = 75/239 (31%), Gaps = 52/239 (21%)
Query: 73 IHTTRSWDFMGFSKGKLSSSQEGS-VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
+ + G G I+ + DTG+ +
Sbjct: 8 VKADVAQSSYGLY---------GQGQIVAVADTGLDTGRNDSS---------------MH 43
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
F KI +Y + ++ D+ GHGTH + + G ++ G+A
Sbjct: 44 EAF--RGKITA--------LYALGRTNNANDTNGHGTHVAGSVLGN---GSTNKGMA--- 87
Query: 192 ARGGVPNARISMYKVCWSDGCAT---ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDP 248
P A + + S G +++ F A + G I + S G+ Y D
Sbjct: 88 -----PQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGAYTTDS 142
Query: 249 IAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFA--PWTLTVAASSIDRKFVAQAVLGNG 305
+ + K + +AGN GP+ ++S +TV A+ R
Sbjct: 143 RNVDDY-VRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSFGSYADNIN 200
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A Length = 434 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 4e-16
Identities = 35/134 (26%), Positives = 60/134 (44%), Gaps = 11/134 (8%)
Query: 436 KVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495
V FSSRGP +KPD+ APG IL++ S +AP S + + GTSM+
Sbjct: 201 HVAQFSSRGPTKD--GRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMA 257
Query: 496 CPHASGSAAYVKAAHPNW-----SPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQ 550
P +G+ A ++ PS +K+AL+ A + G G + +
Sbjct: 258 TPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGL---GYPNGNQGWGRVTLDK 314
Query: 551 AIDPGLVYDATEVD 564
+++ V +++ +
Sbjct: 315 SLNVAYVNESSSLS 328
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 81.4 bits (201), Expect = 1e-16
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 22/119 (18%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
FS+ G N I APG +IL + P V +GTSM+ P
Sbjct: 255 HFSNWGGNNTKEGI-----LAPGEEILGAQ---------PCTEEPVRL---TGTSMAAPV 297
Query: 499 ASGSAAYVKAAH----PNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G +A + + ++++AL+ TA D E+ E G +N A+
Sbjct: 298 MTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVEEPER-CLRGFVNIPGAMK 355
|
| >4aks_A PATG, thiazoline oxidase/subtilisin-like protease; hydrolase, patellamide; 2.19A {Prochloron didemni} PDB: 4akt_A Length = 360 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 2e-16
Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 27/220 (12%)
Query: 91 SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKG---ICTGANFTCNNKIIGARYYN 147
+ + + I ++D + F +S W T ++ I
Sbjct: 45 TLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKG 104
Query: 148 SENIYEVTDFH----SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISM 203
E + H H +ST G+E H+ +G+A PN R+
Sbjct: 105 KEKEEALEAVIPDTKDRIVLNDHACHVTSTIVGQE--HSPVFGIA--------PNCRVIN 154
Query: 204 YKVC------WSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPI--AIGSFH 255
+ D + ++ A D A+ G +II + E+ + AI
Sbjct: 155 MPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTSEGEEILVQAIKK-- 212
Query: 256 AMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRK 295
+L + GN+ + + + P TL V A+ +D
Sbjct: 213 CQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVDGT 252
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 1e-16
Identities = 60/335 (17%), Positives = 100/335 (29%), Gaps = 80/335 (23%)
Query: 33 LVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSKG----- 87
+VY + + + V + + GV V +H+ + SW G ++
Sbjct: 26 IVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIP 84
Query: 88 ------------KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFT 135
++ + + +LDTG+ + I +
Sbjct: 85 WGIERVKAPSVWSITDGSVSVIQVAVLDTGVDYDHPDLAAN-----------IAWCVSTL 133
Query: 136 CNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGG 195
T D GHGTH T A G G
Sbjct: 134 RGK--------------VSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGVV--G 169
Query: 196 V-PNARISMYKVCWSDGCAT-ADILAAFDDAIAD--------------------GVDIIS 233
V P +I +V + G + +DI + AI ++IS
Sbjct: 170 VAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAEVIS 229
Query: 234 VSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSID 293
+SLG Y D I A GI+ ++GN G S P + V A +
Sbjct: 230 MSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN 285
Query: 294 RKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWG 328
+ + ++ PG+ I S + SY + G
Sbjct: 286 DNIASFSNRQPEVSAPGVDILSTYPDD-SYETLMG 319
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A Length = 395 | Back alignment and structure |
|---|
Score = 74.4 bits (183), Expect = 3e-14
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 39/128 (30%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+R P +++APGVDIL+++ P+D S+ + GT+M+ PH
Sbjct: 290 SFSNRQP----------EVSAPGVDILSTY---------PDD----SYETLMGTAMATPH 326
Query: 499 ASGSAAYVKAAH-------------PNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGH 545
SG A ++AA+ + S ++++ L TA + + YG G
Sbjct: 327 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGYGV 383
Query: 546 INPAQAID 553
+ A A+
Sbjct: 384 VRAALAVQ 391
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 3e-16
Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 29/120 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
F++ + DI APGV I +++ S + +SGT+M+ PH
Sbjct: 217 DFTNTNE--------EIDIVAPGVGIKSTY----LDS---------GYAELSGTAMAAPH 255
Query: 499 ASGSAAYVKAAHPN-----WSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G+ A + + S + I + L+ A G ++ + I
Sbjct: 256 VAGALALIINLAEDAFKRSLSETEIYAQLVRRA---TPIGFTAQAEGNGFLTLDLVERIT 312
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* Length = 327 | Back alignment and structure |
|---|
Score = 71.6 bits (176), Expect = 1e-13
Identities = 48/236 (20%), Positives = 75/236 (31%), Gaps = 60/236 (25%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
+ W G IIG++DTG + ++ I G
Sbjct: 27 IVEAPAVWRASAKGAG---------QIIGVIDTGCQVDHPDLAER-----------IIGG 66
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
N T + D + D+ GHGTH + T A E + G+A
Sbjct: 67 VNLTTDY---------------GGDETNFSDNNGHGTHVAGTVAAAE-TGSGVVGVA--- 107
Query: 192 ARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAI------ADGVDIISVSLGSDFPFEY 244
P A + + K DG I A A+ + + II++SLG E
Sbjct: 108 -----PKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTDSEE 162
Query: 245 FEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNF-----APWTLTVAASSIDRK 295
D + +A+ + +AGN G + F + V A D +
Sbjct: 163 LHDAVK----YAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFDLR 214
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 4e-16
Identities = 27/133 (20%), Positives = 47/133 (35%), Gaps = 24/133 (18%)
Query: 421 ATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480
A + + + ++ S G N + DI APG +I L P+
Sbjct: 220 ALAQYRKGETPVLHGGGITGSRFGNNWV-------DIAAPGQNIT---------FLRPDA 263
Query: 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFA 540
SGTS + SG A + + +P + + +K L+ +A S +
Sbjct: 264 ----KTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLVDKV---- 315
Query: 541 YGSGHINPAQAID 553
+N +AI
Sbjct: 316 TEGRVLNAEKAIS 328
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} Length = 347 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 39/227 (17%), Positives = 62/227 (27%), Gaps = 56/227 (24%)
Query: 138 NKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVP 197
++ + + + V HGT +S A R YG+ G P
Sbjct: 64 SEFAKFSFTQDGSPFPVKK---SEALYIHGTAMASLIASR-------YGIY-----GVYP 108
Query: 198 NARISMYKVCWSDGCAT----ADILAAFDDAIADGVDIISVSLGSDFP---FEYFEDPIA 250
+A IS +V + + + + II++S G + E
Sbjct: 109 HALISSRRVIPDGVQDSWIRAIESIMSNVFLAPGEEKIINISGGQKGVASASVWTELLSR 168
Query: 251 IGSFHAMKYGILTSNSAGNSGPDPYSVSNFAP-----------------WTLTVAASSID 293
L + GN G D +S + VAA +
Sbjct: 169 ----MGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQY 224
Query: 294 RKFVAQAVLGNGITY------------PGLSINSFDLNGISYPLIWG 328
RK + G GIT PG +I + G
Sbjct: 225 RKGETPVLHGGGITGSRFGNNWVDIAAPGQNITFLRPDA-KTGTGSG 270
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 2e-15
Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 28/115 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+ G VD+ APG I +++ P T + +SGTSM+ PH
Sbjct: 192 SFSTYGS---WVDV-----AAPGSSIYSTY---------PTST----YASLSGTSMATPH 230
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G A + + S S+I++A+ TA + + G +N +A+
Sbjct: 231 VAGVAGLLAS--QGRSASNIRAAIENTADKISGTGTY-----WAKGRVNAYKAVQ 278
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E Length = 279 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 1e-14
Identities = 44/225 (19%), Positives = 75/225 (33%), Gaps = 53/225 (23%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
KI ++WD ++G I ++DTG+ K + G
Sbjct: 17 KIQAPQAWDI---AEGS-------GAKIAIVDTGVQSNHPDLAGK-----------VVGG 55
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
+F N+ +P++ GHGTH + AA G A
Sbjct: 56 WDFVDNDS-------------------TPQNGNGHGTHCAGIAAAVTNNSTGIAGTA--- 93
Query: 192 ARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA 250
P A I +V + G T + A G +IS+SLG + +
Sbjct: 94 -----PKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVGNSGLQQAVN 148
Query: 251 IGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRK 295
+A G + +AGN+G + + + VA++ +
Sbjct: 149 ----YAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQNDN 189
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 2e-15
Identities = 22/125 (17%), Positives = 40/125 (32%), Gaps = 21/125 (16%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSV---------SFNII 489
FS+ G N DI APG ++ +
Sbjct: 351 EFSNFGMNYT-------DIAAPGGSFAYLNQFGVDKWMNEGYMHKENILTTANNGRYIYQ 403
Query: 490 SGTSMSCPHASGSAAYVKAA-HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINP 548
+GT+++ P SG+ A + H P L +++ YG G ++
Sbjct: 404 AGTALATPKVSGALALIIDKYHLEKHPDKAIELLYQHGTSKNNKPFSR----YGHGELDV 459
Query: 549 AQAID 553
+A++
Sbjct: 460 YKALN 464
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A Length = 471 | Back alignment and structure |
|---|
Score = 76.5 bits (188), Expect = 8e-15
Identities = 32/168 (19%), Positives = 51/168 (30%), Gaps = 32/168 (19%)
Query: 140 IIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGV--- 196
++ + E D H D +GHGT S + A G +
Sbjct: 175 LVPLNGFRGTEPEETGDVHDVNDRKGHGTMVSGQTS----------------ANGKLIGV 218
Query: 197 -PNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSF- 254
PN + +MY+V S + A A DG +I++S+GS + +
Sbjct: 219 APNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEK 278
Query: 255 -----------HAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASS 291
+A K + +AGN G D
Sbjct: 279 VEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGE 326
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 7e-15
Identities = 29/115 (25%), Positives = 47/115 (40%), Gaps = 28/115 (24%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+ G D+ APGVDI+++ + + +SGTSM+ PH
Sbjct: 193 SFSNYGT--------WVDVVAPGVDIVSTI---------TGN----RYAYMSGTSMASPH 231
Query: 499 ASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
+G AA + + + I+ A+ TA + + G IN A+
Sbjct: 232 VAGLAALLASQGR--NNIEIRQAIEQTADKISGTGTY-----FKYGRINSYNAVT 279
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 Length = 280 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 4e-14
Identities = 43/202 (21%), Positives = 71/202 (35%), Gaps = 45/202 (22%)
Query: 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVT 155
I ++DTG+ + K + G +F N+
Sbjct: 32 GQEIAVIDTGVDYTHPDLDGK-----------VIKGYDFVDNDY---------------- 64
Query: 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT- 214
P D HGTH + AA G+A PN RI + +G T
Sbjct: 65 ---DPMDLNNHGTHVAGIAAAETNNATGIAGMA--------PNTRILAVRALDRNGSGTL 113
Query: 215 ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD- 273
+DI A A G ++I++SLG D E+ + +A G + +AGN+G
Sbjct: 114 SDIADAIIYAADSGAEVINLSLGCDCHTTTLENAVN----YAWNKGSVVVAAAGNNGSST 169
Query: 274 PYSVSNFAPWTLTVAASSIDRK 295
+ +++ + V A +
Sbjct: 170 TFEPASY-ENVIAVGAVDQYDR 190
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 74.1 bits (183), Expect = 9e-15
Identities = 34/99 (34%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
T D+ + SFS+ G +DI APG I +SW T + + N
Sbjct: 182 TSNDSRS----SFSNYGT---CLDIY-----APGSSITSSWY-----------TSNSATN 218
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
ISGTSM+ PH +G AA +PN SP+ + + L T A
Sbjct: 219 TISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRA 257
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} Length = 278 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 4e-09
Identities = 29/144 (20%), Positives = 57/144 (39%), Gaps = 23/144 (15%)
Query: 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCA 213
+ + + D GHGTH + T G YG+A N + +V G
Sbjct: 60 IDNDYDATDCNGHGTHVAGTIGGST------YGVA--------KNVNVVGVRVLNCSGSG 105
Query: 214 T-ADILAAFDDAIADGV--DIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNS 270
+ + ++A + + + ++SLG + +D + A+ GI +AGN
Sbjct: 106 SNSGVIAGINWVKNNASGPAVANMSLGGGAS-QATDDAVN----AAVAAGITFVVAAGND 160
Query: 271 GPDPYSVS-NFAPWTLTVAASSID 293
+ + S A +TV +++ +
Sbjct: 161 NSNACNYSPARAADAITVGSTTSN 184
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 74.3 bits (183), Expect = 1e-14
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 39/128 (30%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+R P +++APGVDIL+++ P+D S+ + GT+M+ PH
Sbjct: 215 SFSNRQP----------EVSAPGVDILSTY---------PDD----SYETLMGTAMATPH 251
Query: 499 ASGSAAYVKAAH-------------PNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGH 545
SG A ++AA+ + S ++++ L TA + + YG G
Sbjct: 252 VSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGWDA---DYGYGV 308
Query: 546 INPAQAID 553
+ A A+
Sbjct: 309 VRAALAVQ 316
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A Length = 320 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 5e-13
Identities = 50/278 (17%), Positives = 81/278 (29%), Gaps = 68/278 (24%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
++ W ++ + + +LDTG+ + I
Sbjct: 14 RVKAPSVWS--------ITDGSVSVIQVAVLDTGVDYDHPDLAAN-----------IAWC 54
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
+ T D GHGTH T A G
Sbjct: 55 VSTLRGK--------------VSTKLRDCADQNGHGTHVIGTIAAL--------NNDIGV 92
Query: 192 ARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAIAD--------------------GVD 230
G P +I +V + G + +DI + AI +
Sbjct: 93 V-GVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAAE 151
Query: 231 IISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAAS 290
+IS+SLG Y D I A GI+ ++GN G S P + V A
Sbjct: 152 VISMSLGGPADDSYLYDMII----QAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAI 207
Query: 291 SIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWG 328
+ + + ++ PG+ I S + SY + G
Sbjct: 208 DSNDNIASFSNRQPEVSAPGVDILSTYPDD-SYETLMG 244
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 73.0 bits (180), Expect = 2e-14
Identities = 31/99 (31%), Positives = 47/99 (47%), Gaps = 23/99 (23%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
T DA A SFS+ G VD+ APG I ++W T +
Sbjct: 180 TSSDARA----SFSNYGS---CVDLF-----APGASIPSAWY-----------TSDTATQ 216
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
++GTSM+ PH +G AA +P+ +P+S+ SA++ A
Sbjct: 217 TLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGA 255
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} Length = 276 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 28/143 (19%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 158 HSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATAD 216
+ +D GHGTH + T G YG+A + +V +G +T+
Sbjct: 62 GNGQDCNGHGTHVAGTIGGVT------YGVA--------KAVNLYAVRVLDCNGSGSTSG 107
Query: 217 ILAAFDDAIADGVD--IISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP 274
++A D + + ++SLG ++ + +++ G++ + +AGN +
Sbjct: 108 VIAGVDWVTRNHRRPAVANMSLGGGVS-TALDNAVK----NSIAAGVVYAVAAGNDNAN- 161
Query: 275 YSVSNF----APWTLTVAASSID 293
N+ LTV A++
Sbjct: 162 --ACNYSPARVAEALTVGATTSS 182
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 3e-14
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 22/119 (18%)
Query: 439 SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPH 498
SFS+ G + D+ APG DIL++ + +++ ++GTSM+ PH
Sbjct: 236 SFSNYGVDV--------DLAAPGQDILSTVDSGTRRPVSD------AYSFMAGTSMATPH 281
Query: 499 ASGSAAYVKAA----HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
SG AA V +A + N +P+ +K L++T + R A GSG ++ A++
Sbjct: 282 VSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGRLDR----ALGSGIVDAEAAVN 336
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A Length = 340 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 2e-11
Identities = 43/225 (19%), Positives = 73/225 (32%), Gaps = 53/225 (23%)
Query: 96 SVIIGLLDTGIW--PESASFNDKGLSPPPAKWKGICTGANFTCNNKI------------- 140
+V++ ++DTGI + N + G +F N++I
Sbjct: 33 NVVVAVVDTGILHHRD---LNAN-----------VLPGYDFISNSQISLDGDGRDADPFD 78
Query: 141 IGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNAR 200
G + N DS HG+H + T A G+A A+
Sbjct: 79 EGDWFDNWACGGRPDPRKERSDSSWHGSHVAGTIAAVTNNRIGVAGVA--------YGAK 130
Query: 201 ISMYKVCWSDGCATADILAAFDDAI----------ADGVDIISVSLGSDFPFEYFEDPIA 250
+ + G +DI A + +I++SLGSD Y
Sbjct: 131 VVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPENRNPAKVINMSLGSDGQCSYNAQ-TM 189
Query: 251 IGSFHAMKYGILTSNSAGNSGPD--PYSVSNFAPWTLTVAASSID 293
I A + G L +AGN + ++ L+V A++
Sbjct: 190 IDR--ATRLGALVVVAAGNENQNASNTWPTSC-NNVLSVGATTSR 231
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 74.6 bits (183), Expect = 4e-14
Identities = 22/99 (22%), Positives = 38/99 (38%), Gaps = 19/99 (19%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
+D ++ G D+ APG DI+ + S S F
Sbjct: 188 NAQDQPVTLGTLGTNFGRCV--------DLFAPGEDIIGASS-----------DCSTCFV 228
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
SGTS + H +G AA + +A P + + ++ L+ +
Sbjct: 229 SQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 267
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A Length = 546 | Back alignment and structure |
|---|
Score = 54.9 bits (132), Expect = 6e-08
Identities = 25/160 (15%), Positives = 47/160 (29%), Gaps = 33/160 (20%)
Query: 145 YYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMY 204
+ N + HGTH + +GR+ G+A A +
Sbjct: 53 FENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD------AGVA--------KGASMRSL 98
Query: 205 KVCWSDG-CATADILAAFDDAIAD------GVDIISVSLGSDFPFEYFEDPIAIGSFHAM 257
+V G + L + G ++ + L +
Sbjct: 99 RVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGYS-RVLNAACQ----RLA 153
Query: 258 KYGILTSNSAGNSGPDPYSVSNF----APWTLTVAASSID 293
+ G++ +AGN D + AP +TV A++
Sbjct: 154 RAGVVLVTAAGNFRDD---ACLYSPASAPEVITVGATNAQ 190
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 72.2 bits (178), Expect = 5e-14
Identities = 28/99 (28%), Positives = 40/99 (40%), Gaps = 25/99 (25%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
T D+ + SFS+ G VD+ APG I ++W D
Sbjct: 180 TSSDSRS----SFSNWGS---CVDLF-----APGSQIKSAWY----------DGGY---K 214
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
ISGTSM+ PH +G AA + +P + L + A
Sbjct: 215 TISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRA 253
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* Length = 284 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 8e-09
Identities = 32/144 (22%), Positives = 56/144 (38%), Gaps = 23/144 (15%)
Query: 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCA 213
V + D GHGTH + T G + YG+A N I +V G
Sbjct: 58 VDNDADSSDCNGHGTHVAGTIGGSQ------YGVA--------KNVNIVGVRVLSCSGSG 103
Query: 214 T-ADILAAFDDAIADGV--DIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNS 270
T + +++ D + + ++SLG + + A++ G+ +AGNS
Sbjct: 104 TTSGVISGVDWVAQNASGPSVANMSLGGGQS-TALDSAVQ----GAIQSGVSFMLAAGNS 158
Query: 271 GPDPYSVS-NFAPWTLTVAASSID 293
D + S P +TV +++
Sbjct: 159 NADACNTSPARVPSGVTVGSTTSS 182
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 71.9 bits (176), Expect = 3e-13
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 19/99 (19%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
+D ++ G VD+ APG DI+ + S S F
Sbjct: 340 NAQDQPVTLGTLGTNFGR---CVDLF-----APGEDIIGASS-----------DCSTCFV 380
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
SGTS + H +G AA + +A P + + ++ L+ +
Sbjct: 381 SQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFS 419
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} Length = 692 | Back alignment and structure |
|---|
Score = 69.6 bits (170), Expect = 2e-12
Identities = 40/296 (13%), Positives = 81/296 (27%), Gaps = 58/296 (19%)
Query: 12 ASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKL 71
+ LQ +++ + GF K++ + + + V + + +
Sbjct: 91 SERTARRLQAQAARR-GYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSV 149
Query: 72 KIHTT-----R-SWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKW 125
+ R + + + V + LLDT I + +
Sbjct: 150 FAQSIPWNLERITPPRYRADEYQPPDGGSL-VEVYLLDTSIQSDHREIEGR------VMV 202
Query: 126 KGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYY 185
+ N + HGTH + +GR+
Sbjct: 203 TD-----------------FENVPEEDGTRFHRQASKCDSHGTHLAGVVSGRD------A 239
Query: 186 GLAEGTARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAIAD------GVDIISVSLGS 238
G+A A + +V G T + L + G ++ + L
Sbjct: 240 GVA--------KGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAG 291
Query: 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS-NFAPWTLTVAASSID 293
+ + G++ +AGN D S AP +TV A++
Sbjct: 292 GYS-RVLNAACQ----RLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQ 342
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 26/99 (26%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
D + +FS+ G VDI APG I ++W N
Sbjct: 185 DSNDVRS----TFSNYGR---VVDIF-----APGTSITSTWI-------------GGRTN 219
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
ISGTSM+ PH +G AAY+ S ++ + T +
Sbjct: 220 TISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLS 257
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} PDB: 3f7o_A Length = 279 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 33/147 (22%), Positives = 52/147 (35%), Gaps = 34/147 (23%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADI 217
+ RD GHGTH + T + +G+A I KV G + ++I
Sbjct: 63 TARDGHGHGTHCAGTIGSKT------WGVA--------KKVSIFGVKVLDDSGSGSLSNI 108
Query: 218 LAAFDDAIADGVD-------IISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNS 270
+A D +D + S+SLG + A G+ + +AGN
Sbjct: 109 IAGMDFVASDRQSRNCPRRTVASMSLGGGYS-AALNQAAA----RLQSSGVFVAVAAGND 163
Query: 271 GPDPYSVSNF----APWTLTVAASSID 293
D +N P TV A+ +
Sbjct: 164 NRD---AANTSPASEPTVCTVGATDSN 187
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 8e-11
Identities = 29/99 (29%), Positives = 40/99 (40%), Gaps = 26/99 (26%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487
D + SFS+ G +DI PG DIL++W S
Sbjct: 184 DRYDRRS----SFSNYGS---VLDIF-----GPGTDILSTWI-------------GGSTR 218
Query: 488 IISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
ISGTSM+ PH +G AAY+ + +S + TA
Sbjct: 219 SISGTSMATPHVAGLAAYLMTLGKT-TAASACRYIADTA 256
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... Length = 279 | Back alignment and structure |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 28/144 (19%)
Query: 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADI 217
S RD GHGTH + T R YG+A ++ KV +G + I
Sbjct: 62 SSRDGNGHGTHCAGTVGSRT------YGVA--------KKTQLFGVKVLDDNGSGQYSTI 107
Query: 218 LAAFDDAIADGVD-------IISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNS 270
+A D +D + + S+SLG + A G++ + +AGN+
Sbjct: 108 IAGMDFVASDKNNRNCPKGVVASLSLGGGYS-SSVNSAAA----RLQSSGVMVAVAAGNN 162
Query: 271 GPDPYSVS-NFAPWTLTVAASSID 293
D + S P TV AS
Sbjct: 163 NADARNYSPASEPSVCTVGASDRY 186
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 84/503 (16%), Positives = 145/503 (28%), Gaps = 151/503 (30%)
Query: 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGN--SGPD 273
DIL+ F+DA D +F + +D M IL+ + D
Sbjct: 20 DILSVFEDAFVD-----------NFDCKDVQD---------MPKSILSKEEIDHIIMSKD 59
Query: 274 PYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISY-PLIWGGDAA 332
S + WTL + +KFV + + N Y F ++ I
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN---YK------FLMSPIKTEQRQPSMMTR 110
Query: 333 NYSAGANP---DIARF----------------------------------C-----AADA 350
Y + D F A D
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 351 LNSYKVEGKI---VF------CESLLDGSDILAVNGLGTIMADSVFT---DLAFSYPLPA 398
SYKV+ K+ +F C S + + + L + D +T D + + L
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNS--PETVLEMLQKLLYQI-DPNWTSRSDHSSNIKLRI 227
Query: 399 TLISKENGQDILDYIRSTEYPIATIMFGETWK----DAMAPK-----------VVSF-SS 442
I E + ++S Y ++ +A V F S+
Sbjct: 228 HSIQAE----LRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 443 RGPNPITVDILKPDITAP-GVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASG 501
I++D +T +L + P L P + + + +S + S
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLA 342
Query: 502 SAAYVKAAHPNWSP--SSIKSAL--MTTAYVMDSRKQ-EDLE-FAYGSGHINPAQAID-- 553
+ K H N + I+S+L + A + RK + L F + HI P +
Sbjct: 343 TWDNWK--HVNCDKLTTIIESSLNVLEPA---EYRKMFDRLSVFPPSA-HI-PTILLSLI 395
Query: 554 -PGLVYDATEVDYVNFLC------KQGYNTTI------------IRQITGDNSSVCNSTE 594
++ VN L KQ +TI + + S+ +
Sbjct: 396 WFDVIKSDVM-VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 595 PGRAWDLNYPSFSLAIEDGQPIY 617
+ +D + D Y
Sbjct: 455 IPKTFDSD--DLIPPYLDQ---Y 472
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 46.3 bits (109), Expect = 3e-05
Identities = 21/133 (15%), Positives = 44/133 (33%), Gaps = 9/133 (6%)
Query: 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQED--- 536
D N GTS + P A+G + A+PN + ++ + +A ++ D
Sbjct: 259 DINGRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRD 318
Query: 537 ------LEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVC 590
YG G I+ + I+ ++ +L + + S +
Sbjct: 319 SAMGKKYSHRYGFGKIDAHKLIEMSKTWENVNAQTWFYLPTLYVSQSTNSTEETLESVIT 378
Query: 591 NSTEPGRAWDLNY 603
S + + +
Sbjct: 379 ISEKSLQDANFKR 391
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 7e-05
Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 34/214 (15%)
Query: 147 NSENIYEVTDFHSPR-DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYK 205
S + + T+ PR + HGT + A ++ + G+ NA+IS +
Sbjct: 80 GSWDFNDNTNLPKPRLSDDYHGTRCAGEIAAKKGNNFCGVGVG--------YNAKISGIR 131
Query: 206 VCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYG----- 260
+ D T D A+ D DI S S G + + P + A+ G
Sbjct: 132 ILSGDI-TTEDEAASLIYG-LDVNDIYSCSWGPADDGRHLQGPSDL-VKKALVKGVTEGR 188
Query: 261 -------ILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRK------FVAQAVLGNGI 306
+ S + G G + Y + +++T+ A + +
Sbjct: 189 DSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHKDLHPPYSEGCSAVMAVTYS 248
Query: 307 TYPGLSINSFDLNGISYPLIWGGD--AANYSAGA 338
+ G I+S D+NG GG AA +AG
Sbjct: 249 SGSGEYIHSSDING-RCSNSHGGTSAAAPLAAGV 281
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 4e-05
Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 48/266 (18%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
+++ +LD GI GA+F N+ +
Sbjct: 40 IVVSILDDGIEKNHPDLAGN-----------YDPGASFDVND-----------QDPDPQP 77
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATAD 216
++ + HGT + A G+A NARI + DG T
Sbjct: 78 RYTQMNDNRHGTRCAGEVAAVANNGVCGVGVA--------YNARIGGVR--MLDGEVTDA 127
Query: 217 ILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTS------------ 264
+ A + + I S S G + + + P + + A G+
Sbjct: 128 VEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARL-AEEAFFRGVSQGRGGLGSIFVWAS 186
Query: 265 -NSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISY 323
N + +TL++++++ + + S + + I
Sbjct: 187 GNGGREHDSCNCDGYTNSIYTLSISSATQFGNVPWYSEACSSTLATTYSSGNQNEKQIVT 246
Query: 324 PLIWGGDAANYS--AGANPDIARFCA 347
+ +++ + + P A A
Sbjct: 247 TDLRQKCTESHTGTSASAPLAAGIIA 272
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 48/343 (13%), Positives = 94/343 (27%), Gaps = 48/343 (13%)
Query: 300 AVLGNGITY--PGLSIN-----SFDLNG-ISYPLIWGGDAANYSAGANPDIARFCAADAL 351
++L +GI P L+ N SFD+N P + G A AA A
Sbjct: 43 SILDDGIEKNHPDLAGNYDPGASFDVNDQDPDPQPRYTQMNDNRHGTR--CAGEVAAVAN 100
Query: 352 NSYKVEG-----KIVFCESLL-DGSDILAVNGLGTIMADSV-------FTDLAFSYPLPA 398
N G +I L + +D + LG D + PA
Sbjct: 101 NGVCGVGVAYNARIGGVRMLDGEVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPA 160
Query: 399 TLISKENGQDILDYIRS--TEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVD-ILKP 455
L + + + + + A+ G + +++ +
Sbjct: 161 RLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCD----GYTNSIYTLSISSATQF 216
Query: 456 DITAPGVDILASWSPVAPPSLDPEDTRSVS-------FNIISGTSMSCPHASGSAAYVKA 508
+ +S S + + + V+ +GTS S P A+G A
Sbjct: 217 GNVPWYSEACSSTLATTYSSGNQNEKQIVTTDLRQKCTESHTGTSASAPLAAGIIALTLE 276
Query: 509 AHPNWSPSSIKSALMTTAYVMDSRKQE--------DLEFAYGSGHINPAQAIDPGLVYDA 560
A+ N + ++ ++ T+ + + +YG G ++ + +
Sbjct: 277 ANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSYGYGLLDAGAMVALAQNWTT 336
Query: 561 TEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNY 603
C + G +
Sbjct: 337 VAPQRK---CIVEILVEPKDIGKRLEVRKAVTACLGEPNHITR 376
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| 3i6s_A | 649 | Subtilisin-like protease; PA-domain, FN3-domain, h | 100.0 | |
| 3vta_A | 621 | Cucumisin; subtilisin-like fold, serine protease, | 100.0 | |
| 1xf1_A | 926 | C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St | 100.0 | |
| 3afg_A | 539 | Subtilisin-like serine protease; propeptide, therm | 100.0 | |
| 2z2z_A | 395 | TK-subtilisin precursor; thermococcus kodakaraensi | 100.0 | |
| 3t41_A | 471 | Epidermin leader peptide processing serine protea; | 100.0 | |
| 1y9z_A | 441 | Alkaline serine protease; subtilisin-like alpha/be | 100.0 | |
| 1r6v_A | 671 | Subtilisin-like serine protease; sandwich domain, | 100.0 | |
| 1dbi_A | 280 | AK.1 serine protease; hydrolase; 1.80A {Bacillus S | 100.0 | |
| 1r0r_E | 274 | Subtilisin carlsberg; high resolution, serine prot | 100.0 | |
| 1gci_A | 269 | Subtilisin; hydrolase, serine protease; 0.78A {Bac | 100.0 | |
| 1to2_E | 281 | Subtilisin BPN'; serine protease, hydrolase; HET: | 100.0 | |
| 4h6x_A | 357 | Thiazoline oxidase/subtilisin-like protease; hydro | 100.0 | |
| 1thm_A | 279 | Thermitase; hydrolase(serine protease); 1.37A {The | 100.0 | |
| 2p4e_P | 692 | Proprotein convertase subtilisin/kexin type 9; pro | 100.0 | |
| 2x8j_A | 327 | Intracellular subtilisin protease; hydrolase, seri | 100.0 | |
| 3zxy_A | 282 | Subtilisin-like protein; hydrolase; 1.58A {Prochlo | 100.0 | |
| 2ixt_A | 310 | 36KDA protease; serine protease, sphericase, subti | 100.0 | |
| 4h6w_A | 306 | N-terminal cyanobactin protease; hydrolase; 2.45A | 100.0 | |
| 2z30_A | 320 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 100.0 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 100.0 | |
| 2iy9_A | 347 | SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col | 100.0 | |
| 1wmd_A | 434 | Protease; alpha-beta hydrolase fold, jelly-roll be | 100.0 | |
| 3lpc_A | 340 | APRB2; protease, subtilase, virulence factor, hydr | 100.0 | |
| 1sh7_A | 284 | Extracellular subtilisin-like serine proteinase; c | 100.0 | |
| 2b6n_A | 278 | Proteinase K; S binding, substrate specificity, pr | 100.0 | |
| 4dzt_A | 276 | Aqualysin-1, aqualysin-I; serine protease, calcium | 100.0 | |
| 2oxa_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 2pwa_A | 279 | Proteinase K; structure, alanine boronic acid, hyd | 100.0 | |
| 1p8j_A | 471 | Furin precursor; prohormone convertase, SPC1, PACE | 100.0 | |
| 3f7m_A | 279 | Alkaline serine protease VER112; verticillium psal | 100.0 | |
| 2id4_A | 503 | Kexin; KEX2, kexin, furin, proprotein, prohormone, | 100.0 | |
| 2qtw_B | 546 | Proprotein convertase subtilisin/kexin type 9; cor | 100.0 | |
| 3hjr_A | 600 | Extracellular serine protease; kexin, hydrolase; 1 | 100.0 | |
| 1t1e_A | 552 | Kumamolisin; proenzyme, prosubtilase, activation m | 99.9 | |
| 1ga6_A | 372 | Serine-carboxyl proteinase; serine-carboxyl protei | 99.84 | |
| 3edy_A | 544 | Tripeptidyl-peptidase 1; protease, TPP1, sedolisin | 98.82 | |
| 2w2n_P | 114 | Proprotein convertase subtilisin/kexin type 9; hyd | 98.49 | |
| 3cnq_P | 80 | Subtilisin BPN'; uncleaved, proenzyme, substrate c | 98.07 | |
| 2qtw_A | 124 | Proprotein convertase subtilisin/kexin type 9 Pro; | 97.88 | |
| 3icu_A | 194 | E3 ubiquitin-protein ligase RNF128; E3 ligase, ene | 97.86 | |
| 1v5i_B | 76 | POIA1, IA-1=serine proteinase inhibitor; protease- | 97.69 | |
| 2z30_B | 65 | TK-subtilisin; thermococcus kodakaraensis, hydrola | 96.48 | |
| 2ys4_A | 122 | Hydrocephalus-inducing protein homolog; hydin, PAP | 95.53 | |
| 3qbt_B | 140 | Inositol polyphosphate 5-phosphatase OCRL-1; prote | 92.85 | |
| 3iib_A | 444 | Peptidase M28; YP_926796.1, structural genomics, J | 92.82 | |
| 2ek8_A | 421 | Aminopeptidase; metalloproteinase, hydrolase; 1.80 | 91.29 | |
| 3lxu_X | 1354 | Tripeptidyl-peptidase 2; spindle complex, aminopep | 91.28 | |
| 2e6j_A | 112 | Hydin protein; PAPD, structural genomics, NPPSFA, | 90.66 | |
| 2r39_A | 118 | FIXG-related protein; structural GE PSI-2, protein | 90.45 | |
| 2qsv_A | 220 | Uncharacterized protein; MCSG, structural genomics | 83.57 | |
| 3qis_A | 366 | Inositol polyphosphate 5-phosphatase OCRL-1; DENT | 81.89 |
| >3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-117 Score=1023.82 Aligned_cols=609 Identities=40% Similarity=0.647 Sum_probs=543.5
Q ss_pred cCCCcccccccc---CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcc---cCceeEeeeecC
Q 044427 75 TTRSWDFMGFSK---GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFT---CNNKIIGARYYN 147 (734)
Q Consensus 75 ~~~s~~~~g~~~---~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~---~n~ki~g~~~~~ 147 (734)
++++|+|+|++. .|..+.+|+||+|||||||||++||+|.+.+++|+|.+|++.|+. .+|+ ||+|++++++|.
T Consensus 1 Tt~s~~flgl~~~~~~w~~~~~G~gViVaViDTGId~~Hp~f~d~g~~p~p~~wkg~c~~g~~f~~~~cN~kiig~~~f~ 80 (649)
T 3i6s_A 1 TTHTSDFLKLNPSSGLWPASGLGQDVIVAVLDSGIWPESASFQDDGMPEIPKRWKGICKPGTQFNASMCNRKLIGANYFN 80 (649)
T ss_dssp CCSHHHHTTCCSSSSHHHHHGGGTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCBTTBCTTSCCSSEEEEEECC
T ss_pred CCCChHHcCCCCchhhHhccCCCCCCEEEEEccCCCCCChhhccCCCCCCccccccccccCccccccccccceeeeEecc
Confidence 478999999985 578889999999999999999999999999999999999999998 7775 999999999998
Q ss_pred CCCcc----ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHH
Q 044427 148 SENIY----EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDD 223 (734)
Q Consensus 148 ~~~~~----~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ 223 (734)
+++.. ...+..+++|..||||||||||||+.+++.+++|++.|.+.||||+|+|+++|+|+..++..+++++||+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~D~~GHGThVAgiiag~~~~~~~~~G~~~g~~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~ 160 (649)
T 3i6s_A 81 KGILANDPTVNITMNSARDTDGHGTHCASITAGNFAKGVSHFGYAPGTARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQ 160 (649)
T ss_dssp HHHHHHCTTCCCTTCSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSSTTCEEEEEECEETTEECHHHHHHHHHH
T ss_pred CcccccccccccCCCCCCCCCCcHHHHHHHHhCCCCcCccccccccCceeEECCCCEEEEEeccCCCCCCHHHHHHHHHH
Confidence 65421 12344678899999999999999999888888999999999999999999999999888999999999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeC
Q 044427 224 AIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLG 303 (734)
Q Consensus 224 ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~ 303 (734)
|+++|+||||||||.. ..++..+.+.+++++|.++|++||+||||+|+...++++.+||+|+|||++.+|.|...+.++
T Consensus 161 A~~~gvdVIn~SlG~~-~~~~~~~~i~~a~~~A~~~Gi~vV~AAGN~G~~~~t~~~~ap~vitVgAst~dr~f~~~~~lg 239 (649)
T 3i6s_A 161 AVADGVDMISISYGYR-FIPLYEDAISIASFGAMMKGVLVSASAGNRGPGIGSLNNGSPWILCVASGHTDRTFAGTLTLG 239 (649)
T ss_dssp HHHTTCSEEEECCCCC-SCCGGGCHHHHHHHHHHHTTCEEEEECCSCTTSTTCCSCCCTTSEEEEEEECSCEEEEEEEET
T ss_pred HHHcCCCEEEeCCccC-CcccchhHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCCCCceEEEeeeecccceeeEEEeC
Confidence 9999999999999987 467788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCc--CceEEEEeeCCc-----chhhhccC
Q 044427 304 NGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKV--EGKIVFCESLLD-----GSDILAVN 376 (734)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~--~gkiv~~~~~~~-----~~~~~~~G 376 (734)
|++.+.|.+++........+|+++... ...|.+..++...+ +||||+|.|+.+ ..+++++|
T Consensus 240 ng~~~~g~sl~~~~~~~~~~plv~~~~------------~~~C~~~~l~~~~vdl~GkIvlc~~g~~~~~~k~~~~~~~G 307 (649)
T 3i6s_A 240 NGLKIRGWSLFPARAFVRDSPVIYNKT------------LSDCSSEELLSQVENPENTIVICDDNGDFSDQMRIITRARL 307 (649)
T ss_dssp TSCEEEEECCCSSCBCEEEEEEECCTT------------TTTCCCHHHHTTSSSGGGCEEEECCCSCHHHHHHHHHHHTC
T ss_pred CCcEEeeeecccCcccCcceeeEeccc------------ccccccccccccccccCCcEEEEeCCCccHHHHHHHHHhcC
Confidence 999999999988776677899998662 56799988888877 999999999874 77899999
Q ss_pred ceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeec-CCCCceeeccCCCCCCCCCCCCCC
Q 044427 377 GLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKD-AMAPKVVSFSSRGPNPITVDILKP 455 (734)
Q Consensus 377 a~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~-~~~~~~a~fSS~Gpt~~~~~~~KP 455 (734)
+.|+|++|+......+.+.+|+.+++..++..|++|++++.++++++.+..++.+ .+.+.++.||||||+...+++|||
T Consensus 308 a~g~i~~n~~~~~~~~~~~~P~~~v~~~~g~~i~~yi~s~~~~~a~i~~~~t~~~~~~~~~va~FSSrGP~~~~~~ilKP 387 (649)
T 3i6s_A 308 KAAIFISEDPGVFRSATFPNPGVVVNKKEGKQVINYVKNSVTPTATITFQETYLDTKPAPVVAASSARGPSRSYLGISKP 387 (649)
T ss_dssp SEEEEECCCGGGGGCCCCCSCEEEECHHHHHHHHHHHHTCSSCEEEEEEEEEECCCSSCCEECTTSCCSSCTTCTTSCSC
T ss_pred ceEEEEecCccccccccCcCCEEEEcHHHHHHHHHHHhcCCCceEEEeecceeeccCCCCcccccCCCCCCCCCCCccCC
Confidence 9999999988444477889999999999999999999999999999999998887 889999999999999977899999
Q ss_pred cEEecCCCEeeccCCCCCCCCCCCCC-CCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCc
Q 044427 456 DITAPGVDILASWSPVAPPSLDPEDT-RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQ 534 (734)
Q Consensus 456 DI~APG~~I~sa~~~~~~~~~~~~~~-~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~ 534 (734)
||+|||++|+++|+....+.....+. +...|..+||||||||||||++|||||+||+|+|++||++||+||.+++..+.
T Consensus 388 DI~APG~~Ilsa~~~~~~~~~~~~d~~~~~~y~~~SGTSMAaPhVAGvaALlks~~P~~Spa~IksaLmtTA~~~~~~g~ 467 (649)
T 3i6s_A 388 DILAPGVLILAAYPPNVFATSIGTNILLSTDYILESGTSMAAPHAAGIAAMLKAAHPEWSPSAIRSAMMTTADPLDNTRK 467 (649)
T ss_dssp CEEEECSSEEEECCTTSCCEEETTTEEECCSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCBCTTSS
T ss_pred eEEeCCCCeEeecCCCCCccccccccccccceecccccccccHHHHHHHHHHHHhCCCCCHHHHHHHHhcccccccCCCC
Confidence 99999999999998754433333222 34789999999999999999999999999999999999999999999887554
Q ss_pred c---------cCCCCCCCCccCccccCCCceeccCCchhhhhhhhccCCCcceeEEeccCCCcc--cCCCCCCCCCCCCC
Q 044427 535 E---------DLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSV--CNSTEPGRAWDLNY 603 (734)
Q Consensus 535 ~---------~~~~~~G~G~vn~~~Al~~~lv~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~--c~~~~~~~~~~ln~ 603 (734)
+ .+++.||+|+||+.+|++||||||+..+||++|||++||+..+|+.|++++. . |++ .+.||||
T Consensus 468 ~i~~~~~~~~a~~~~~GaG~vn~~~A~~pGLvyd~~~~dy~~flc~~~y~~~~i~~~~~~~~-~~~C~~----~~~~lNy 542 (649)
T 3i6s_A 468 PIKDSDNNKAATPLDMGAGHVDPNRALDPGLVYDATPQDYVNLLCSLNFTEEQFKTIARSSA-SHNCSN----PSADLNY 542 (649)
T ss_dssp BCEETTTSSBCCHHHHTTCBCCHHHHTCCSEECCCCHHHHHHHHHTTCCCHHHHHHHHTTTS-CC-CCC----CCCCCCC
T ss_pred cccccccCCcCCcCCCCeeeeCHHHhcCccccccCCchhHHHhhhcCCCCcccceeeecCCC-cCCCCC----chhhcCC
Confidence 3 3578999999999999999999999999999999999999999999998765 7 975 4679999
Q ss_pred Cceeeee-cCCCceE--EEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceE
Q 044427 604 PSFSLAI-EDGQPIY--GVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMS 680 (734)
Q Consensus 604 psi~~~~-~~~~~~~--~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~ 680 (734)
|||++.+ +.+.... ++++|||||||+...+|+++++.|.|++|+|+|++|+|.+.+|+++|+|||+........+.|
T Consensus 543 Ps~~~~~~~~~~~~~~~~~~~Rtvtnvg~~~~~y~~~v~~p~g~~v~v~P~~l~f~~~~~~~~f~v~~~~~~~~~~~~~f 622 (649)
T 3i6s_A 543 PSFIALYSIEGNFTLLEQKFKRTVTNVGKGAATYKAKLKAPKNSTISVSPQILVFKNKNEKQSYTLTIRYIGDEGQSRNV 622 (649)
T ss_dssp SSEEEEECCSSCCCCEEEEEEEEEEECC--CEEEEEEEECCTTEEEEEESSEEEECC-CCEEEEEEEEEECCC---CCCE
T ss_pred CcEEeecccCCCCccceEEEEEEEEEeCCCCcEEEEEEecCCCCEEEEECCEEEEecCCCEEEEEEEEEecccCCCceEE
Confidence 9999987 4432112 899999999999899999999999999999999999998899999999999987665567999
Q ss_pred EEEEEEc--CceEEEeEEEEEec
Q 044427 681 GAIVWED--GVHQVRSPVVIYNI 701 (734)
Q Consensus 681 G~i~~~~--~~~~v~~P~~~~~~ 701 (734)
|+|+|++ +.|.||+|++++..
T Consensus 623 g~l~w~~~~~~h~vrsPi~v~~~ 645 (649)
T 3i6s_A 623 GSITWVEQNGNHSVRSPIVTSPI 645 (649)
T ss_dssp EEEEEEETTSCCEEEEEEEEEEC
T ss_pred EEEEEEcCCCCeEEEEeEEEEEc
Confidence 9999998 99999999999864
|
| >3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-112 Score=989.41 Aligned_cols=615 Identities=53% Similarity=0.911 Sum_probs=526.2
Q ss_pred cCCCccccccccC-ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcccCceeEeeeecCCCCcc
Q 044427 75 TTRSWDFMGFSKG-KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFTCNNKIIGARYYNSENIY 152 (734)
Q Consensus 75 ~~~s~~~~g~~~~-~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~~n~ki~g~~~~~~~~~~ 152 (734)
++++|+|+|+++. |....+|+||+|||||||||++||+|.++++++++.+|++.|+. .+|.||+|++++++|..+...
T Consensus 1 tt~s~~flGl~~~~~~~~~~G~gViVgViDTGId~~Hp~f~d~g~~~~~~~w~g~~~~~~~~~~n~k~ig~~~~~~~~~~ 80 (621)
T 3vta_A 1 TTRSWDFLGFPLTVPRRSQVESNIVVGVLDTGIWPESPSFDDEGFSPPPPKWKGTCETSNNFRCNRKIIGARSYHIGRPI 80 (621)
T ss_dssp CCSHHHHTTCCTTCCCCHHHHTTCEEEEEESCBCTTSGGGCCTTCCCCCTTCCCCBCCSSSCCCCSSEEEEEECCCSSSC
T ss_pred CCCChhHcCCCccccccCCCCCCCEEEEEecCCCCCChhhcCCCCCCcccccccccccCCCcccCcceeeeeecccCCcc
Confidence 5789999999874 57788999999999999999999999999999999999999998 889999999999999988766
Q ss_pred ccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEE
Q 044427 153 EVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDII 232 (734)
Q Consensus 153 ~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVI 232 (734)
.+.+..+++|++||||||||||||+...+.+.+|++.|.++||||+|+|++||+|++.++..+++++||++|+++|+|||
T Consensus 81 ~~~~~~~p~D~~GHGTHvAgi~AG~~~~~~~~~g~~~g~~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVi 160 (621)
T 3vta_A 81 SPGDVNGPRDTNGHGTHTASTAAGGLVSQANLYGLGLGTARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDII 160 (621)
T ss_dssp CTTCCSSSBCSSSHHHHHHHHHHCCCEEEEEETTEEEEEECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEE
T ss_pred CCCCCCCCCCCCcCHHHHHHHHhCcCCCCccccccccccEEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEE
Confidence 66777889999999999999999999888888888889999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeee
Q 044427 233 SVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312 (734)
Q Consensus 233 NlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (734)
|||||+..+.++..+++++++++|+++||+||+||||+|+...++++.+||+++|++++.+|.|...+.++++..+.+.+
T Consensus 161 n~SlG~~~~~~~~~~~~~~~~~~a~~~Gi~vv~aAGN~g~~~~t~~~~a~~~~~v~ast~d~~~~~~~~~~~~~~~~~~s 240 (621)
T 3vta_A 161 SLSVGGANPRHYFVDAIAIGSFHAVERGILTSNSAGNGGPNFFTTASLSPWLLSVAASTMDRKFVTQVQIGNGQSFQGVS 240 (621)
T ss_dssp EECCCCCCGGGGGGCTHHHHHHHHHTTTCEEEEECCSCCSSTTCCCCCCTTSEEEEEECCSEEEEEEEEETTSCEEEEBC
T ss_pred EecCCCCCCCCcCCcHHHHHHHHHHHCCCEEEEeCCCCCCCCcccCCCCCCceeEEEeeccccceeeEEeccCceeeeee
Confidence 99999986667788999999999999999999999999999999999999999999999999999999999999998887
Q ss_pred cccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCc--chhhhccCceEEEEecCCccCc
Q 044427 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLD--GSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 313 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~--~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
+... ....+++++....... .+.......|.+..++...++|||++|.+... .......|+.+++++++... .
T Consensus 241 ~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~v~gkivl~~~~~~~~~~~~~~~Ga~gvi~~~~~~~-~ 315 (621)
T 3vta_A 241 INTF--DNQYYPLVSGRDIPNT--GFDKSTSRFCTDKSVNPNLLKGKIVVCEASFGPHEFFKSLDGAAGVLMTSNTRD-Y 315 (621)
T ss_dssp CCCS--CCEEECEEETTTSCCT--TCCHHHHTTTCTTCSCGGGTTTSEEECSSCCCHHHHHHHHTTCSEEEEECSCCS-S
T ss_pred cccC--CCcccccccccccccc--cccccccccccccccccccccceEEEEecCCChhHHhhhhcceeEEEEEecCCC-c
Confidence 7654 3456777776554332 12344567899999999999999999998654 56677889999999887543 3
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCC
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSP 470 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~ 470 (734)
.+.+.+|...++..++..++.|+..+..+.+.+.......+...+.++.||||||+...++++||||+|||++|+|+++.
T Consensus 316 ~~~~~lP~~~v~~~~g~~i~~~~~~~~~~~a~~~~~~~~~~~~~~~va~FSSrGP~~~~~~ilKPDI~APG~~Ilsa~~~ 395 (621)
T 3vta_A 316 ADSYPLPSSVLDPNDLLATLRYIYSIRSPGATIFKSTTILNASAPVVVSFSSRGPNRATKDVIKPDISGPGVEILAAWPS 395 (621)
T ss_dssp CCCCSSSEEEECHHHHHHHHHHHHHHSSCCEEECCCEEEECTTCCCBCTTSCCCSCTTCTTSCSCCEEEECSSEEEECCS
T ss_pred ccccccceEEECHHHHHHHHHHHhccCCcceEEecceEeccCCCCceeeecCCCCCCCCCCeeccccccCCcceEeecCc
Confidence 56788999999999999999999999999988877777766778999999999999877899999999999999999986
Q ss_pred CCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccc
Q 044427 471 VAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQ 550 (734)
Q Consensus 471 ~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~ 550 (734)
...... +.....|..+||||||||||||++|||||+||+|+|++||++||+||++++..+.+..+++||+|+||+.+
T Consensus 396 ~~~~~~---~~~~~~y~~~SGTSMAaPhVAGvaALl~q~~P~~spa~IksaLmtTA~~~~~~~~~~~~~~~GaG~v~~~~ 472 (621)
T 3vta_A 396 VAPVGG---IRRNTLFNIISGTSMSCPHITGIATYVKTYNPTWSPAAIKSALMTTASPMNARFNPQAEFAYGSGHVNPLK 472 (621)
T ss_dssp SSCBTT---BCCCCSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTCBCCCTTTCTTTHHHHTTCBCCHHH
T ss_pred cccccC---cCCCCcceEecCccccchhhhhHHHHHHHHCCCCCHHHHHHHHHhcCCcccccCCCCCchhcCCCccCHHH
Confidence 432222 23347899999999999999999999999999999999999999999999888777788999999999999
Q ss_pred cCCCceeccCCchhhhhhhhccCCCcceeEEeccCCCcccCCCCCCCCCCCCCCceeeeecCCCceEEEEEEEEEecCCC
Q 044427 551 AIDPGLVYDATEVDYVNFLCKQGYNTTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSP 630 (734)
Q Consensus 551 Al~~~lv~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~ln~psi~~~~~~~~~~~~~~~~tv~N~~~~ 630 (734)
|++||||||+..+||+.|||+++|+..+++.+++... .|.........+||||||++........+++++|||||++..
T Consensus 473 A~~pGLvyd~~~~dy~~~lc~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lN~pS~~v~~~~~~~~~~t~~rtvtnvg~~ 551 (621)
T 3vta_A 473 AVRPGLVYDANESDYVKFLCGQGYNTQAVRRITGDYS-ACTSGNTGRVWDLNYPSFGLSVSPSQTFNQYFNRTLTSVAPQ 551 (621)
T ss_dssp HSCCSEECCCCGGGCC------------------------------CGGGSCCSSEEEECCSSCCEEEEEEEEEEECSSS
T ss_pred hcCCCeEeecccchhhhhhcccCCCchhheeeecccc-ccCCCCcCcccccccccEEEEccCCCceEEEEEEEEEccCCC
Confidence 9999999999999999999999999999999998876 888766667889999999998665555689999999999999
Q ss_pred CeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEcCceEEEeEEEEEe
Q 044427 631 NSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWEDGVHQVRSPVVIYN 700 (734)
Q Consensus 631 ~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~~~~~v~~P~~~~~ 700 (734)
..||++++++|.|++|+|+|++|+|.+.||+++|+|||+.. .++.++||+|+|+|+.|.||+|++|+.
T Consensus 552 ~~ty~~~v~~p~gv~v~V~P~~l~f~~~~~~~~~~vt~~~~--~~~~~~~g~l~w~d~~h~Vr~Pi~v~~ 619 (621)
T 3vta_A 552 ASTYRAMISAPQGLTISVNPNVLSFNGLGDRKSFTLTVRGS--IKGFVVSASLVWSDGVHYVRSPITITS 619 (621)
T ss_dssp CEEEEEEEECCSSEEEEEESSEEEECSTTCEEEEEEEEEEC--CCSSEEEEEEEEECSSCCCEEEEEEEC
T ss_pred CeEEEEEEECCCCcEEEEecCEEEEcCCCcEEEEEEEEEec--CCCceEEEEEEEEcCCEEEEeCEEEEE
Confidence 99999999999999999999999998889999999999864 457899999999999999999999985
|
| >1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-81 Score=753.72 Aligned_cols=530 Identities=21% Similarity=0.242 Sum_probs=416.6
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CC-------------cccCceeEeeee
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-AN-------------FTCNNKIIGARY 145 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~-------------f~~n~ki~g~~~ 145 (734)
++++++..|..+++|+||+|||||||||++||+|.+ +..|++.|.. .+ ..||+|++++++
T Consensus 2 d~i~~~~~w~~~~~G~GV~VaVIDTGId~~Hp~f~~------~~~~~~~~~~~~~~~~~~~~~g~~~g~~~n~Kii~~~~ 75 (926)
T 1xf1_A 2 DPSQVKTLQEKAGKGAGTVVAVIDAGFDKNHEAWRL------TDKTKARYQSKEDLEKAKKEHGITYGEWVNDKVAYYHD 75 (926)
T ss_dssp CTTCCHHHHHHHCSCTTCEEEEEESCCTTCCCCCSC------CSCCCSSCCHHHHHHHHHHTTTCCCCBCCSSSCCEEEE
T ss_pred CccccHHHHhccCCCCCcEEEEEecCCCCCCHhHcC------CCCCcccccchhhhcccccccCcccccccCcccceeec
Confidence 456777778778899999999999999999999983 3567766653 11 139999999999
Q ss_pred cCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHH
Q 044427 146 YNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDD 223 (734)
Q Consensus 146 ~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ 223 (734)
|.++. ...|..||||||||||||+...+.+. .+.+.||||+|+|+++|+|+..+ +...++++||+|
T Consensus 76 ~~~~~--------~~~D~~gHGThVAgiiAg~~~~~~~~----~~~~~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~ 143 (926)
T 1xf1_A 76 YSKDG--------KTAVDQEHGTHVSGILSGNAPSETKE----PYRLEGAMPEAQLLLMRVEIVNGLADYARNYAQAIRD 143 (926)
T ss_dssp SCCCS--------CCCCSSTTTTHHHHSSCCCCCCCCSC----SCCTTTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHH
T ss_pred cccCC--------CCCCCCCcHHHHHHHHhCCCccCccc----CCceEEECCCCEEEEEEeecCCCCCCcHHHHHHHHHH
Confidence 97653 22388999999999999997654322 23459999999999999999876 456789999999
Q ss_pred HHhCCCcEEEEccCCCCC-CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCC-------------CCCcCCC--CCceEEe
Q 044427 224 AIADGVDIISVSLGSDFP-FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPD-------------PYSVSNF--APWTLTV 287 (734)
Q Consensus 224 ai~~g~dVINlSlG~~~~-~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~-------------~~~~~~~--ap~vitV 287 (734)
|+++|+||||||||.... ...+.+.++.++++|.++|++||+||||+|+. ..++.++ +||+|+|
T Consensus 144 Ai~~gvdVIn~SlG~~~~~~~~~~~~~~~ai~~A~~~GilvV~AAGN~G~~g~~~~~~~~~~p~~~tv~~PA~~~~vitV 223 (926)
T 1xf1_A 144 AINLGAKVINMSFGNAALAYANLPDETKKAFDYAKSKGVSIVTSAGNDSSFGGKTRLPLADHPDYGVVGTPAAADSTLTV 223 (926)
T ss_dssp HHHTTCEEEEECCSSCCCTTCCCCHHHHHHHHHHHHTTCEEEEECCSCCBTTCTTSCCBTTCCCCBCCCSCTTTCCSEEE
T ss_pred HHHhCCcEEEECCCCCCCCccccccHHHHHHHHHHhCCcEEEEeCCCCCCcCCccccccccCCCcceecCcccCCceEEE
Confidence 999999999999998742 34466788889999999999999999999963 2234444 7999999
Q ss_pred cccccCceeEEEEEe-CCCeEeeeeecccCC--CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEe
Q 044427 288 AASSIDRKFVAQAVL-GNGITYPGLSINSFD--LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCE 364 (734)
Q Consensus 288 ga~~~~~~~~~~~~~-~~g~~~~g~~~~~~~--~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~ 364 (734)
||++.++.+...+.+ +++....+.++.... .....+|+++.+. .|.+..+ .+++||||+|.
T Consensus 224 gA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~~~~--------------g~~~~~~--~~v~Gkivl~~ 287 (926)
T 1xf1_A 224 ASYSPDKQLTETVRVKTADQQDKEMPVLSTNRFEPNKAYDYAYANR--------------GTKEDDF--KDVKGKIALIE 287 (926)
T ss_dssp EEEBCSEEEEEEEEEECTTSCEEEEEEEEESCCCTTCCEEEEECTT--------------SCSTTTT--TTCTTSEEEEE
T ss_pred eccccccccccceEEEcCCCcceeeEEEecCCCCCCceEEEEECCC--------------CCCccch--hhcCCeEEEEE
Confidence 999999999888887 555444444332211 1456789998653 3765555 68999999999
Q ss_pred eCCc-----chhhhccCceEEEEecCCccCc----ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEeccee--ec-C
Q 044427 365 SLLD-----GSDILAVNGLGTIMADSVFTDL----AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETW--KD-A 432 (734)
Q Consensus 365 ~~~~-----~~~~~~~Ga~g~i~~n~~~~~~----~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~--~~-~ 432 (734)
|+.+ ..+++++|++|+|++|+..... .....+|+..++..++..|++ ... +++.+..+. .. .
T Consensus 288 rg~~~~~~k~~~~~~~Ga~gvi~~n~~~~~~~~~~~~~~~iP~~~i~~~~g~~l~~----~~~--~ti~~~~~~~~~~~~ 361 (926)
T 1xf1_A 288 RGDIDFKDKIAKAKKAGAVGVLIYDNQDKGFPIELPNVDQMPAAFISRKDGLLLKD----NPQ--KTITFNATPKVLPTA 361 (926)
T ss_dssp CCSSCHHHHHHHHHHTTCSEEEEECSSTTCCCEECCCSTTCCEEEECHHHHHHHHH----CSS--CEEEECSSCEEEECS
T ss_pred CCCCCHHHHHHHHHhCCCcEEEEEecCCCCcccccCccccccEEEEeHHHHHHHHh----CCc--eEEEecccceecccC
Confidence 9864 6789999999999999875432 557789999999999998874 333 444444332 33 5
Q ss_pred CCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHH----h
Q 044427 433 MAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVK----A 508 (734)
Q Consensus 433 ~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~----q 508 (734)
..+.++.||||||+. ++++||||+|||++|++++++ +.|..+||||||||||||++|||+ +
T Consensus 362 ~~~~~a~FSSrGp~~--~~~lKPDI~APG~~I~sa~~~-------------~~y~~~SGTSMAaPhVAG~aALl~q~~k~ 426 (926)
T 1xf1_A 362 SGTKLSRFSSWGLTA--DGNIKPDIAAPGQDILSSVAN-------------NKYAKLSGTSMSAPLVAGIMGLLQKQYET 426 (926)
T ss_dssp SCSBCCTTSCCCBCT--TSCBSCCEEEECCCEEESSSC-------------SSSCEEESCTTHHHHHHHHHHHHHHHHHH
T ss_pred CcceeccccCCCCCC--CCccCceEECCCCCEEeeccC-------------CcceecCccchhHHHHHHHHHHHHHHHhc
Confidence 578999999999997 999999999999999999986 689999999999999999999996 4
Q ss_pred hCCCCCHHH----HHHHHHhccccccCCCc--ccCCCCCCCCccCccccCCCceeccCCchhhhhhhhccCCCcceeEEe
Q 044427 509 AHPNWSPSS----IKSALMTTAYVMDSRKQ--EDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNTTIIRQI 582 (734)
Q Consensus 509 ~~P~ls~~~----vk~~L~~TA~~~~~~~~--~~~~~~~G~G~vn~~~Al~~~lv~~~~~~d~~~~l~~~~~~~~~~~~~ 582 (734)
.||.|+|++ ||++||+||+++...+. .+++++||+|+||+.+|++|.+ |||..++++.+
T Consensus 427 ~~P~~sp~~~~~~Iks~L~~TA~~~~~~~~~~~~~~~~~G~G~vn~~~A~~~~~-----------~l~~~~~~~~~---- 491 (926)
T 1xf1_A 427 QYPDMTPSERLDLAKKVLMSSATALYDEDEKAYFSPRQQGAGAVDAKKASAATM-----------YVTDKDNTSSK---- 491 (926)
T ss_dssp SSSSSHHHHHHHHHHHHHHHHSBCCEEGGGTEECCHHHHTTCBCCHHHHHHCSE-----------EEEESSSSCSC----
T ss_pred cCCCCCHHHHHHHHHHHHHhcCCCcccCCCCccCChhccCCCccCHHHhcCCCe-----------EEEcCCCCcce----
Confidence 699999997 99999999998865432 2357899999999999999854 57876654322
Q ss_pred ccCCCcccCCCCCCCCCCCCCCceeeeecCCCceEEEEEEEEEecCCCC--eeEEEEeeC--CCceEEEEEcCeeEEe--
Q 044427 583 TGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTNVGSPN--STYTVRPYM--PASVSVDVEPQSLSFS-- 656 (734)
Q Consensus 583 ~~~~~~~c~~~~~~~~~~ln~psi~~~~~~~~~~~~~~~~tv~N~~~~~--~ty~~~v~~--~~g~~v~v~p~~~~~~-- 656 (734)
|.+..+. + ..+++|||||+|+.+ .+|++.+.. +.+..++|+|..|.|.
T Consensus 492 -----------------------i~l~~~~-~--~~~~~~tv~N~g~~~~~~~y~~~v~~~~~~~~~~~v~p~~l~~~~~ 545 (926)
T 1xf1_A 492 -----------------------VHLNNVS-D--KFEVTVNVHNKSDKPQELYYQATVQTDKVDGKHFALAPKVLYETSW 545 (926)
T ss_dssp -----------------------EEEEEEC-S--EEEEEEEEEECSSSCEEEEEEEEEEEEEEETTEEEEEEEEEEECCC
T ss_pred -----------------------eeccccC-c--cEEEEEEEEEeCCCceeEEEEEEEEeccCCCceEEeccceeEeccC
Confidence 3333332 2 578899999999854 567777764 5677888877655443
Q ss_pred -----eCCcEEEEEEEEEccc--------cCCCCceEEEEEEE--cCce-EEEeEEEEEecCCcc
Q 044427 657 -----AVGEQKSFTVKVTGPK--------IAQQPIMSGAIVWE--DGVH-QVRSPVVIYNILPGA 705 (734)
Q Consensus 657 -----~~g~~~~~~vt~~~~~--------~~~~~~~~G~i~~~--~~~~-~v~~P~~~~~~~~~~ 705 (734)
++||+++|+|||+++. ++++.|+||+|+|+ ++.| .||+||+++.++.+.
T Consensus 546 ~~vtv~ag~~~~~~vt~~~~~~~~~~~~~~~~~~~~~G~i~~~~~~~~~~~v~~P~~~~~g~~~~ 610 (926)
T 1xf1_A 546 QKITIPANSSKQVTVPIDASRFSKDLLAQMKNGYFLEGFVRFKQDPTKEELMSIPYIGFRGDFGN 610 (926)
T ss_dssp EEEEECTTEEEEEEEEEECHHHHHHHHHHSTTCEEEEEEEEEESSTTSCCCEEEEEEEEESCGGG
T ss_pred CeEEECCCCEEEEEEEEEcCccchhhcccccCCcEEEEEEEEEeCCCCCCEEEeeeEEEecCccc
Confidence 3599999999999862 23566899999999 5666 499999999998543
|
| >3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-59 Score=534.19 Aligned_cols=338 Identities=29% Similarity=0.445 Sum_probs=279.1
Q ss_pred CcceEEEecceeeEEEEEeCHHHHHHH-----------hcCCCeeEEEeCcccccccC-----CCccccccccCccCCCC
Q 044427 30 KESLVYSYGRSFNGFAAKLTDEEVARF-----------SETEGVISVIPNHKLKIHTT-----RSWDFMGFSKGKLSSSQ 93 (734)
Q Consensus 30 ~~~v~~~y~~~~ng~s~~~~~~~i~~L-----------~~~p~V~~v~~~~~~~~~~~-----~s~~~~g~~~~~~~~~~ 93 (734)
+.+++|+|+ .|+||+++++.+++++| +++|+|++|++++.+++... .....++++..|..+++
T Consensus 59 g~~v~~~~~-~~~g~~~~l~~~~~~~l~~~~~~~~~~~~~~~~V~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 137 (539)
T 3afg_A 59 GAKIKYNYH-IIPALAVKIKVKDLLIIAGLMDTGYFGNAQLSGVQFIQEDYVVKVAVETEGLDESAAQVMATNMWNLGYD 137 (539)
T ss_dssp TCEEEEECS-SSSEEEEEEEHHHHHHHTTCSCCC---CCCCTTEEEEEECCEEECC-----------CCBCSCCBCCSCC
T ss_pred CCeEEEEee-eeeEEEEEeCHHHHHHHHhhccccccccccCCCeeEEEecccccccCccccCCccccccCcHhHHhcCCC
Confidence 468999995 79999999999999999 89999999999998876532 22344566668888999
Q ss_pred CCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHH
Q 044427 94 EGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSST 173 (734)
Q Consensus 94 G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi 173 (734)
|+||+|||||||||++||+|.+ ++++.++|.++. ..+.|+.|||||||||
T Consensus 138 G~gv~VaViDtGid~~Hpdl~~-----------------------~i~~~~d~~~~~-------~~~~D~~gHGThVAgi 187 (539)
T 3afg_A 138 GSGITIGIIDTGIDASHPDLQG-----------------------KVIGWVDFVNGK-------TTPYDDNGHGTHVASI 187 (539)
T ss_dssp CTTCEEEEEESBCCTTSGGGTT-----------------------TEEEEEETTTCC-------SSCCBSSSHHHHHHHH
T ss_pred CCCcEEEEEecCCCCCChHHhC-----------------------CEeeeEECCCCC-------CCCCCCCCCHHHHHHH
Confidence 9999999999999999999963 366777776543 3567899999999999
Q ss_pred hccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC----CCcEEEEccCCCCCCCCCCCH
Q 044427 174 AAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD----GVDIISVSLGSDFPFEYFEDP 248 (734)
Q Consensus 174 ~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~----g~dVINlSlG~~~~~~~~~~~ 248 (734)
|||+... ..|.+.||||+|+|+.+|++++.+ ++.+++++||+||+++ |++|||||||... .....+.
T Consensus 188 iag~~~~-------~~g~~~GvAp~A~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~g~~Vin~SlG~~~-~~~~~~~ 259 (539)
T 3afg_A 188 AAGTGAA-------SNGKYKGMAPGAKLVGIKVLNGQGSGSISDIINGVDWAVQNKDKYGIKVINLSLGSSQ-SSDGTDS 259 (539)
T ss_dssp HHCCCGG-------GTTTTCCSCTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTHHHHTEEEEEECCCCCS-CCCSCSH
T ss_pred HhCcCcc-------CCCCEEEECCCCEEEEEEeecCCCCcCHHHHHHHHHHHHhhhhhcCCcEEEeCCCCCC-CCccchH
Confidence 9987532 123458999999999999998876 7788999999999975 8999999999884 3456688
Q ss_pred HHHHHHHHHhCCcEEEEcCCCCCCCCCCc--CCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeE
Q 044427 249 IAIGSFHAMKYGILTSNSAGNSGPDPYSV--SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLI 326 (734)
Q Consensus 249 ~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~--~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~ 326 (734)
+..++.++.++|++||+||||+|+...++ +...+++|+|||++..
T Consensus 260 l~~ai~~a~~~GvlvV~AAGN~g~~~~~~~~Pa~~~~vitVgA~~~~--------------------------------- 306 (539)
T 3afg_A 260 LSQAVNNAWDAGLVVVVAAGNSGPNKYTVGSPAAASKVITVGAVDKY--------------------------------- 306 (539)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCCSSSSCCCTTTTCSSSEEEEEECTT---------------------------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCCCCcccCCccCCceEEEeeecCC---------------------------------
Confidence 99999999999999999999999865443 4557899999885421
Q ss_pred EcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccch
Q 044427 327 WGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENG 406 (734)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~ 406 (734)
T Consensus 307 -------------------------------------------------------------------------------- 306 (539)
T 3afg_A 307 -------------------------------------------------------------------------------- 306 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcce
Q 044427 407 QDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486 (734)
Q Consensus 407 ~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y 486 (734)
+.++.||||||+. ++++||||+|||++|+++++..... .+.....|
T Consensus 307 ----------------------------~~~a~fSs~Gp~~--~~~~kpdi~APG~~I~s~~~~~~~~----~~~~~~~y 352 (539)
T 3afg_A 307 ----------------------------DVITDFSSRGPTA--DNRLKPEVVAPGNWIIAARASGTSM----GQPINDYY 352 (539)
T ss_dssp ----------------------------SCBCSSSCCCCCT--TCBCCCSEEEECSSEEEECCTTCCC----SEECSSSE
T ss_pred ----------------------------cccccccCCCCCC--CCCCcccEecCcCCEEeeccCCCCC----CCCCcccc
Confidence 2688999999998 8999999999999999998652110 01112369
Q ss_pred EEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCCCc
Q 044427 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPG 555 (734)
Q Consensus 487 ~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~~ 555 (734)
..++|||||||||||++|||+|++|+|++++||++|++||++++..+. .+..||||+||+.+|++..
T Consensus 353 ~~~sGTSmAaP~VAG~aALl~~~~p~~s~~~vk~~L~~tA~~~~~~~~--~~~~~G~G~vn~~~Al~~~ 419 (539)
T 3afg_A 353 TAAPGTAMATPHVAGIAALLLQAHPSWTPDKVKTALIETADIVKPDEI--ADIAYGAGRVNAYKAAYYD 419 (539)
T ss_dssp EEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSBCSSGGGC--SBTTTBTCBCCHHHHHTGG
T ss_pred cccCchHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC--CccCccCCccCHHHHhhhc
Confidence 999999999999999999999999999999999999999998875443 3789999999999999853
|
| >2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-56 Score=490.96 Aligned_cols=319 Identities=25% Similarity=0.353 Sum_probs=264.6
Q ss_pred cCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccccccC--------------CCcc--ccccccCccCCC
Q 044427 29 AKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTT--------------RSWD--FMGFSKGKLSSS 92 (734)
Q Consensus 29 ~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~~~--------------~s~~--~~g~~~~~~~~~ 92 (734)
.+.+++++|. .|++|+++++.+++++|+++|+|++|++++.++++.. ..|. .++++..|..+
T Consensus 22 ~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~i~~~~~w~~~- 99 (395)
T 2z2z_A 22 IGGHIVYQFK-LIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAVLLGKPSWLGGGSTQPAQTIPWGIERVKAPSVWSIT- 99 (395)
T ss_dssp TTCEEEEECS-SSSEEEEEEEGGGHHHHHTSTTEEEEEECCEEEECCEECC------CCSCCCCHHHHHTTCGGGGGTC-
T ss_pred cCCEEEEEec-cCCEEEEEECHHHHHHHHcCCCceEEEEeeeecccCCCCcccccccCccccCCcchhhcCHHHHHhhc-
Confidence 4678999996 5999999999999999999999999999998876421 2232 24555577766
Q ss_pred CCCC--CEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHH
Q 044427 93 QEGS--VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHT 170 (734)
Q Consensus 93 ~G~G--V~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThV 170 (734)
+|+| |+|||||||||++||+|.+ ++..+++|..+... .+..++.|..||||||
T Consensus 100 ~G~g~~v~VaViDtGid~~Hp~l~~-----------------------~~~~~~~~~~~~~~--~~~~~~~d~~gHGT~v 154 (395)
T 2z2z_A 100 DGSVSVIQVAVLDTGVDYDHPDLAA-----------------------NIAWCVSTLRGKVS--TKLRDCADQNGHGTHV 154 (395)
T ss_dssp SSCCTTCEEEEEESCBCTTCTTTGG-----------------------GEEEEEECGGGCCB--CCHHHHBCSSSHHHHH
T ss_pred CCCCCcEEEEEEcCCCCCCChhHhh-----------------------ccccCccccCCccc--CCCCCCCCCCCCHHHH
Confidence 9999 9999999999999999963 24455555543210 0001246789999999
Q ss_pred HHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC--------------------CC
Q 044427 171 SSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD--------------------GV 229 (734)
Q Consensus 171 AGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~--------------------g~ 229 (734)
||||+|..+. .| +.||||+|+|+.+|++++.+ ++.+++++||+||+++ ++
T Consensus 155 Agiia~~~n~----~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (395)
T 2z2z_A 155 IGTIAALNND----IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGDGIIAGDPDDDAA 225 (395)
T ss_dssp HHHHHCCCSS----SS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSSTTCSSCCTTCTTSCCC
T ss_pred HHHHHeecCC----Cc-----eEEECCCCEEEEEEEecCCCCccHHHHHHHHHHHHhCccccccccccccccccccCCCC
Confidence 9999997321 12 38999999999999998876 6788999999999998 99
Q ss_pred cEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEee
Q 044427 230 DIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYP 309 (734)
Q Consensus 230 dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~ 309 (734)
+|||||||... ....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 226 ~Vin~S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------- 285 (395)
T 2z2z_A 226 EVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN---------------- 285 (395)
T ss_dssp SEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----------------
T ss_pred eEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccCCCCEEEEEEecCC----------------
Confidence 99999999873 2356777888899999999999999998776777788999999985422
Q ss_pred eeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccC
Q 044427 310 GLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTD 389 (734)
Q Consensus 310 g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 389 (734)
T Consensus 286 -------------------------------------------------------------------------------- 285 (395)
T 2z2z_A 286 -------------------------------------------------------------------------------- 285 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccC
Q 044427 390 LAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWS 469 (734)
Q Consensus 390 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~ 469 (734)
+.++.||+||| +|+|||++|+++++
T Consensus 286 ---------------------------------------------~~~a~fS~~G~----------~v~APG~~i~s~~~ 310 (395)
T 2z2z_A 286 ---------------------------------------------DNIASFSNRQP----------EVSAPGVDILSTYP 310 (395)
T ss_dssp ---------------------------------------------SCBCTTSCSSC----------SEEEECSSEEEEET
T ss_pred ---------------------------------------------CCCCcccCCCC----------CEEeCCCCeeeecC
Confidence 36789999997 67999999999998
Q ss_pred CCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC-------------CCCHHHHHHHHHhccccccCCCccc
Q 044427 470 PVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP-------------NWSPSSIKSALMTTAYVMDSRKQED 536 (734)
Q Consensus 470 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-------------~ls~~~vk~~L~~TA~~~~~~~~~~ 536 (734)
. +.|..++|||||||||||++|||+|++| .|++.+||++|++||++++..+.
T Consensus 311 ~-------------~~y~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~~~~~~ls~~~v~~~L~~tA~~~~~~g~-- 375 (395)
T 2z2z_A 311 D-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHITADDLGPTGW-- 375 (395)
T ss_dssp T-------------TEEEEEESHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSSSSHHHHHHHHSBCCSSSSS--
T ss_pred C-------------CceEecCCHHHHHHHHHHHHHHHHHhCccccccccccccccCCCHHHHHHHHHhhccccCCCCC--
Confidence 6 7899999999999999999999999999 99999999999999999876553
Q ss_pred CCCCCCCCccCccccCCC
Q 044427 537 LEFAYGSGHINPAQAIDP 554 (734)
Q Consensus 537 ~~~~~G~G~vn~~~Al~~ 554 (734)
+..||||+||+.+|++.
T Consensus 376 -~~~~G~G~vd~~~A~~~ 392 (395)
T 2z2z_A 376 -DADYGYGVVRAALAVQA 392 (395)
T ss_dssp -BTTTBTCBCCHHHHHHH
T ss_pred -CCCccCceeCHHHHHHH
Confidence 78999999999999874
|
| >3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-55 Score=496.06 Aligned_cols=333 Identities=21% Similarity=0.278 Sum_probs=263.2
Q ss_pred ccCcceEEEecceeeEEEEEeCHHHHHHHhc-CCCeeEEEeCcccccccCC-------------Cccccccc---cCccC
Q 044427 28 SAKESLVYSYGRSFNGFAAKLTDEEVARFSE-TEGVISVIPNHKLKIHTTR-------------SWDFMGFS---KGKLS 90 (734)
Q Consensus 28 ~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~-~p~V~~v~~~~~~~~~~~~-------------s~~~~g~~---~~~~~ 90 (734)
+.+.+++++|. .|++|+++++++++++|++ +|+|++|+++..+++.... .|.+..+. ..|..
T Consensus 63 ~~g~~v~~~~~-~~~~~~~~~~~~~~~~L~~~~p~V~~v~~~~~~~~~~~~~~~~~~~~~~~~~~w~l~~i~~~~~~~~~ 141 (471)
T 3t41_A 63 KKSLNVVYNIP-ELHVAQIKMTKMHANALANYKNDIKYINATCSTCITSEKTIDRTSNESLFSRQWDMNKITNNGASYDD 141 (471)
T ss_dssp HHTCEEEEEEG-GGTEEEEEECHHHHHHHHTCTTTEEEEEECCSSCBCCCCCCCC---CCSCCCCHHHHTTTTTTGGGGG
T ss_pred hCCCEEEEecC-CccEEEEEeCHHHHHHHHhcCCCCcEEEecceeccccccccccCCCCccccccccHhhccCcHHHHhc
Confidence 45678889994 5999999999999999999 9999999999888775432 34443332 35677
Q ss_pred CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHH
Q 044427 91 SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHT 170 (734)
Q Consensus 91 ~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThV 170 (734)
+.+|+||+|||||||||++||+|.+... .+. ..++....|.........+...+.|..||||||
T Consensus 142 ~~~G~gv~VaViDtGid~~Hp~~~~~~~-------~~~---------~~~~~~~~~~~~~~~~~~~~~~~~d~~gHGT~v 205 (471)
T 3t41_A 142 LPKHANTKIAIIDTGVMKNHDDLKNNFS-------TDS---------KNLVPLNGFRGTEPEETGDVHDVNDRKGHGTMV 205 (471)
T ss_dssp CCSSCCCCEEEEESCCCTTCTTTTTTBC-------TTC---------EECCCTTCGGGCCTTCCCCTTCCCCSSSHHHHH
T ss_pred cCCCCCcEEEEEeCCCCCCChhHhcCcc-------cCC---------cccccCCCccCCCcccCCCCCCCcCCCCccchh
Confidence 8999999999999999999999985311 110 011111112111111112234567899999999
Q ss_pred HHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCCCC-------
Q 044427 171 SSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFPFE------- 243 (734)
Q Consensus 171 AGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~------- 243 (734)
||||+|+.. +.||||+|+|+.+|+++...+...++++||+||+++|++|||||||......
T Consensus 206 Agiiaa~g~------------~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~ 273 (471)
T 3t41_A 206 SGQTSANGK------------LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTF 273 (471)
T ss_dssp HHHHHCBSS------------SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSE
T ss_pred hheeecCCc------------eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCcccccccc
Confidence 999998742 3899999999999999887788999999999999999999999999742111
Q ss_pred -----CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC------------------cCCCCCceEEecccccCceeEEEE
Q 044427 244 -----YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS------------------VSNFAPWTLTVAASSIDRKFVAQA 300 (734)
Q Consensus 244 -----~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~------------------~~~~ap~vitVga~~~~~~~~~~~ 300 (734)
...+.+..++..+.++|++||+||||+|..... .+..++++|+|||++.+
T Consensus 274 ~~~~~~~~~~~~~ai~~a~~~Gi~vV~AAGN~g~~~~~~~~~~~~~~~~~~~~~~~~Pa~~~~vitVgA~~~~------- 346 (471)
T 3t41_A 274 RKDEKVEYDALQKAINYAKKKKSIVVAAAGNDGIDVNDKQKLKLQREYQGNGEVKDVPASMDNVVTVGSTDQK------- 346 (471)
T ss_dssp ESSCHHHHHHHHHHHHHHHHTTCEEEEECCSSCCBTTCHHHHHHTTTCCSSSEEEEETTTSTTEEEEEEECTT-------
T ss_pred ccccchhHHHHHHHHHHHHhCCCEEEEEcCCCCcCCCcccccccccccccCCceeeccccCCCeEEEEeeCCC-------
Confidence 122457778888899999999999999976432 44556788888875422
Q ss_pred EeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEE
Q 044427 301 VLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGT 380 (734)
Q Consensus 301 ~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~ 380 (734)
T Consensus 347 -------------------------------------------------------------------------------- 346 (471)
T 3t41_A 347 -------------------------------------------------------------------------------- 346 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEec
Q 044427 381 IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAP 460 (734)
Q Consensus 381 i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~AP 460 (734)
+.++.||++||+. |||+||
T Consensus 347 ------------------------------------------------------~~~a~fS~~G~~~-------~di~AP 365 (471)
T 3t41_A 347 ------------------------------------------------------SNLSEFSNFGMNY-------TDIAAP 365 (471)
T ss_dssp ------------------------------------------------------SSBCTTCCBCTTT-------CCEEEE
T ss_pred ------------------------------------------------------CCCCCccCCCCCC-------CeEEec
Confidence 3688999999974 699999
Q ss_pred CCC----------------------EeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC-CCCHHH
Q 044427 461 GVD----------------------ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP-NWSPSS 517 (734)
Q Consensus 461 G~~----------------------I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-~ls~~~ 517 (734)
|++ |+++++. +.|..++|||||||||||++|||+|++| .|+|++
T Consensus 366 G~~i~~~~~~g~~~~~~~~~~~~~~i~s~~~~-------------~~~~~~sGTS~AaP~VAG~aAll~~~~p~~~~~~~ 432 (471)
T 3t41_A 366 GGSFAYLNQFGVDKWMNEGYMHKENILTTANN-------------GRYIYQAGTALATPKVSGALALIIDKYHLEKHPDK 432 (471)
T ss_dssp CCCCHHHHHHHHHHHHHTTTHHHHSEEEECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred CCCcccccccccccccccccccCceeEecCCC-------------CCEEeecchHHHHHHHHHHHHHHHHhccCCCCHHH
Confidence 987 8888876 7899999999999999999999999999 899999
Q ss_pred HHHHHHhccccccCCCcccCCCCCCCCccCccccCCC
Q 044427 518 IKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDP 554 (734)
Q Consensus 518 vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 554 (734)
||++|++||.+... . .+..||||+||+.+|++.
T Consensus 433 v~~~L~~tA~~~~~--~--~~~~~G~G~vd~~~Al~~ 465 (471)
T 3t41_A 433 AIELLYQHGTSKNN--K--PFSRYGHGELDVYKALNV 465 (471)
T ss_dssp HHHHHHHHSBCCSC--C--CHHHHTTCBBCHHHHTTT
T ss_pred HHHHHHHhCCCCCC--C--CcCccccChhCHHHHHHH
Confidence 99999999998765 1 378999999999999985
|
| >1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-53 Score=477.24 Aligned_cols=376 Identities=22% Similarity=0.302 Sum_probs=271.0
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+++++.|... |+||+|||||||||++||+|.+. ++..+++.... +...+.
T Consensus 11 i~~~~~w~~~--g~gv~VaViDtGvd~~Hp~l~~~-----------------------~~~~~~~~~~~-----~~~~~~ 60 (441)
T 1y9z_A 11 VGATVLSDSQ--AGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTG-----NWYQPG 60 (441)
T ss_dssp TTCSSSCCTT--GGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSC-----CTTCCC
T ss_pred cChhhhhhcC--CCCcEEEEEcCCCCCCChhHhcC-----------------------cccCcccCCCC-----CCCCCC
Confidence 5555567543 77999999999999999999742 22222222211 123567
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCC--eEEEEEEecCCC-CCHHHHHHHHHHHHhC-CCcEEEEccC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNA--RISMYKVCWSDG-CATADILAAFDDAIAD-GVDIISVSLG 237 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A--~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-g~dVINlSlG 237 (734)
|..||||||||||+|..+. .| +.||||+| +|+.+|+++..+ ++.+++++||+||+++ |++|||||||
T Consensus 61 d~~gHGT~vAgiia~~~~~----~g-----~~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G 131 (441)
T 1y9z_A 61 NNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (441)
T ss_dssp SSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhcccCC----CC-----ceEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 8899999999999997532 12 38999995 999999999877 7788999999999999 9999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEE------------------
Q 044427 238 SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQ------------------ 299 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~------------------ 299 (734)
.... ...+..++.++.++|++||+||||+|.....++...+++|+|||++.+......
T Consensus 132 ~~~~----~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~VgA~~~~~~~~~~S~~g~~vdv~ApG~~i~s 207 (441)
T 1y9z_A 132 GSGS----TTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILS 207 (441)
T ss_dssp BSCC----BHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCTTEEEEEECSSEEE
T ss_pred CCCC----CHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCCCeEEEEEECCCCCCCccccCCCceEEEeccCCeec
Confidence 8732 245677888899999999999999998777778888999999998766432111
Q ss_pred -EEeCCCe----EeeeeecccCCC-C-Cceee--eEEcCCCcccCCCCCcccccccccc--cCCCCCcCceEEEEeeCCc
Q 044427 300 -AVLGNGI----TYPGLSINSFDL-N-GISYP--LIWGGDAANYSAGANPDIARFCAAD--ALNSYKVEGKIVFCESLLD 368 (734)
Q Consensus 300 -~~~~~g~----~~~g~~~~~~~~-~-~~~~p--l~~~~~~~~~~~~~~~~~~~~c~~~--~~~~~~~~gkiv~~~~~~~ 368 (734)
...+++. .+.|.+++.... + ...++ +.+....... ........|... .++..+++|||++|+|+.+
T Consensus 208 ~~~~g~g~~~~~~~~G~s~~~~~~~p~~~~~~~~~~~~~~~~~g---~~~~~~~~C~~~~~~~~~~~~~gkivl~~rg~~ 284 (441)
T 1y9z_A 208 TVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINA---SATGALAECTVNGTSFSCGNMANKICLVERVGN 284 (441)
T ss_dssp ECSTTCEEEEEEEETTEECGGGCCEECEEEEEETTEEEECCCCC---EEEEEEEEEEEETTEEECCCCTTEEEEEECCSC
T ss_pred cccCCCcccceeecccccccccccCcccccccCCcccccccccc---ccccchhccccccccccCCCccccEEEEecccc
Confidence 0111111 122222221110 0 00000 0111000000 001123458754 5678899999999999753
Q ss_pred ----------chhhhccCceEEEEecCCccC---------cccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEeccee
Q 044427 369 ----------GSDILAVNGLGTIMADSVFTD---------LAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETW 429 (734)
Q Consensus 369 ----------~~~~~~~Ga~g~i~~n~~~~~---------~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~ 429 (734)
..+++++|+.|+|++|+.... ......+|.+.++..++..|+.++... .
T Consensus 285 ~~~~~~~~~~~~~~~~aGa~gvii~~~~~~~g~~~~~~~~~~~~~~~p~~~v~~~~g~~l~~~~~~~----~-------- 352 (441)
T 1y9z_A 285 QGSSYPEINSTKACKTAGAKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQS----T-------- 352 (441)
T ss_dssp SSSSCTHHHHHHHHHHTTCSEEEEECCTTSCSCCCCEEECTTCCCCSCEEEECHHHHHHHHTTTTSE----E--------
T ss_pred CcccccHHHHHHHHHhcCCeEEEEEeCCCccccccccccccccCccccEEEEeHHHHHHHHHHhcCC----c--------
Confidence 678899999999999886421 134567999999999999998876321 0
Q ss_pred ecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhh
Q 044427 430 KDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAA 509 (734)
Q Consensus 430 ~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~ 509 (734)
.+ +... .+.|..++|||||||||||++|||+|+
T Consensus 353 --------------------------t~--------~~~~-------------~~~y~~~sGTSmAaP~VAG~aALl~~~ 385 (441)
T 1y9z_A 353 --------------------------TV--------SNQG-------------NQDYEYYNGTSMATPHVSGVATLVWSY 385 (441)
T ss_dssp --------------------------EE--------EEEE-------------EESEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred --------------------------cc--------cccc-------------CCCceeecccccCCcccchHHHHHHHH
Confidence 01 1111 268999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCCCceeccCCchhhhhhhhccCCCc
Q 044427 510 HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVYDATEVDYVNFLCKQGYNT 576 (734)
Q Consensus 510 ~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~~~~~~d~~~~l~~~~~~~ 576 (734)
||+|+|++||++||+||++++..+. +.+||+|+||+.+|+ ||+.|||++++.+
T Consensus 386 ~p~~sp~~ik~~L~~TA~~~~~~g~---~~~~G~G~vn~~~A~-----------~~~~~lc~~~~~~ 438 (441)
T 1y9z_A 386 HPECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAK-----------AYLDESCTGPTDP 438 (441)
T ss_dssp CTTSCHHHHHHHHHHHSBCCSSSSC---BTTTBTCBCCHHHHH-----------HHHHHCTTCC---
T ss_pred CCCCCHHHHHHHHHhhchhhccCCC---cccccccccCHHHHH-----------HHHHhhhcCCCCC
Confidence 9999999999999999999887654 678999999999995 6999999988754
|
| >1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-52 Score=476.82 Aligned_cols=347 Identities=21% Similarity=0.255 Sum_probs=260.5
Q ss_pred CcceEEEecceeeEEEEEeCH----HHHHHHh--cCCCeeEEEeCccccccc----C-----------------------
Q 044427 30 KESLVYSYGRSFNGFAAKLTD----EEVARFS--ETEGVISVIPNHKLKIHT----T----------------------- 76 (734)
Q Consensus 30 ~~~v~~~y~~~~ng~s~~~~~----~~i~~L~--~~p~V~~v~~~~~~~~~~----~----------------------- 76 (734)
+.++.+++ ..+++++++++. +.+++|+ ++|+|++|+|+..+++.. .
T Consensus 52 g~~v~~~~-~~i~~~~~~~~~~~~~~~~~~l~~~~~~~V~~vepd~~~~l~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T 1r6v_A 52 NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCeEEEEc-CCCcEEEEEeCCcCHHHHHHHHHhccCCCceEEecCeEEEeccccccCccccccccccccccccccccccc
Confidence 45788888 568999999864 3456776 489999999997655321 0
Q ss_pred ---CCcc--ccccccC-ccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCC
Q 044427 77 ---RSWD--FMGFSKG-KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSEN 150 (734)
Q Consensus 77 ---~s~~--~~g~~~~-~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~ 150 (734)
..|. .++++.+ |.. .+|+||+|||||||||++||+|.+.- +.++++..+.
T Consensus 131 ~~~~~W~l~~I~~~~a~w~~-~tG~gV~VAVIDTGVd~~HpdL~~~~-----------------------~~g~~~~~~~ 186 (671)
T 1r6v_A 131 LSNELWGLEAIGVTQQLWEE-ASGTNIIVAVVDTGVDGTHPDLEGQV-----------------------IAGYRPAFDE 186 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHH-CSCTTCEEEEEESCCBTTSGGGTTTB-----------------------CCEEEGGGTE
T ss_pred ccccCCchhccCCchhhhhc-cCCCCCEEEEEeCCCCCCCccccccE-----------------------EecccccCCC
Confidence 0111 1344445 655 89999999999999999999997431 1111111111
Q ss_pred ccccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC------CC-CCHHHHHHHHHH
Q 044427 151 IYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS------DG-CATADILAAFDD 223 (734)
Q Consensus 151 ~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~------~g-~~~~~i~~ai~~ 223 (734)
.. + ...+..|..||||||||||||..+. .| +.||||+|+|+.+|+++. .+ .....+++||+|
T Consensus 187 ~~-p-~~~d~~d~~gHGThVAGiIAa~~ng----~g-----v~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~ 255 (671)
T 1r6v_A 187 EL-P-AGTDSSYGGSAGTHVAGTIAAKKDG----KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIW 255 (671)
T ss_dssp EE-C-TTCBCCTTCSHHHHHHHHHHCCCSS----SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHH
T ss_pred cC-C-CCCCCccCCCcchhhhhhhhccCCC----Cc-----eEEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHH
Confidence 00 0 0123446789999999999997421 12 389999999999999986 22 345678999999
Q ss_pred HHhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEe
Q 044427 224 AIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVL 302 (734)
Q Consensus 224 ai~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~ 302 (734)
|+++|++|||||||... ....+..++.+|.++|++||+||||+|... ..++...|++|+|||++.+..
T Consensus 256 A~~~gadVIN~SlG~~~----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~~~~~~yPA~~~~VItVgA~d~~g~------- 324 (671)
T 1r6v_A 256 ATDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYGG------- 324 (671)
T ss_dssp HHHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEETT-------
T ss_pred HHHcCCCEEEeCCCCCC----CCHHHHHHHHHHHhCCCEEEEeCCCCCCCCCccCcccCCCeEEEEEEcCCCC-------
Confidence 99999999999999862 245678888899999999999999999765 455667789999998643200
Q ss_pred CCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEE
Q 044427 303 GNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIM 382 (734)
Q Consensus 303 ~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~ 382 (734)
T Consensus 325 -------------------------------------------------------------------------------- 324 (671)
T 1r6v_A 325 -------------------------------------------------------------------------------- 324 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCC
Q 044427 383 ADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGV 462 (734)
Q Consensus 383 ~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~ 462 (734)
...++.||++||.. ||+|||+
T Consensus 325 ---------------------------------------------------~~~~a~fSn~G~~v--------dv~APG~ 345 (671)
T 1r6v_A 325 ---------------------------------------------------TFRVAGFSSRSDGV--------SVGAPGV 345 (671)
T ss_dssp ---------------------------------------------------EEEECSSSCCCTTE--------EEEEECS
T ss_pred ---------------------------------------------------ceeeccccCCCCCe--------eEEecCC
Confidence 01478999999976 9999999
Q ss_pred CEeeccCCCCCCC-----CCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccC
Q 044427 463 DILASWSPVAPPS-----LDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDL 537 (734)
Q Consensus 463 ~I~sa~~~~~~~~-----~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~ 537 (734)
+|+++++...... ........+.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+.
T Consensus 346 ~I~St~p~~~~~g~~~~~~~~~~~~~~~y~~~sGTSmAAP~VAGvaALl~s~~P~lt~~~Vr~~L~~TA~~~~~~g~--- 422 (671)
T 1r6v_A 346 TILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW--- 422 (671)
T ss_dssp SEEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---
T ss_pred CEEeecCCCCccccccccccccccCCCceEEecCccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcCCCCCCC---
Confidence 9999987532110 00111223579999999999999999999999999999999999999999999877654
Q ss_pred CCCCCCCccCccccCCCceeccCCchhh
Q 044427 538 EFAYGSGHINPAQAIDPGLVYDATEVDY 565 (734)
Q Consensus 538 ~~~~G~G~vn~~~Al~~~lv~~~~~~d~ 565 (734)
+..||||+||+.+|++..|..+....+|
T Consensus 423 d~~~G~G~vna~~Al~~~l~~~~~~~~~ 450 (671)
T 1r6v_A 423 DHDTGYGLVKLDAALQGPLPTQGGVEEF 450 (671)
T ss_dssp BTTTBTCBCCHHHHHHCCCCSSSEEEEE
T ss_pred CCCcccceeCHHHHhhhhcCCCCCccce
Confidence 6789999999999999877766554444
|
| >1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-51 Score=429.25 Aligned_cols=262 Identities=26% Similarity=0.325 Sum_probs=215.9
Q ss_pred ccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC
Q 044427 81 FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP 160 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~ 160 (734)
.++++..|..+..|+||+|||||||||++||+|.+ +++..++|.++. ..+
T Consensus 17 ~i~~~~aw~~~~g~~gv~VaViDtGvd~~hp~l~~-----------------------~~~~~~~~~~~~-------~~~ 66 (280)
T 1dbi_A 17 NTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-----------------------KVIKGYDFVDND-------YDP 66 (280)
T ss_dssp GGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTT-----------------------TEEEEEETTTTB-------SCC
T ss_pred hcCcHHHHhhcCCCCCCEEEEEeCCcCCCChhhcc-----------------------CcccceeccCCC-------CCC
Confidence 35555678888778899999999999999999963 255566776542 346
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSD 239 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ ++.+++++||+||+++|++|||||||..
T Consensus 67 ~d~~gHGT~vAgiia~~~~~~---~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~ 138 (280)
T 1dbi_A 67 MDLNNHGTHVAGIAAAETNNA---TG-----IAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCD 138 (280)
T ss_dssp CCSSSHHHHHHHHHHCCCSSS---SS-----CCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSC
T ss_pred CCCCCcHHHHHHHHhCcCCCC---Cc-----ceEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCC
Confidence 788999999999999986432 12 38999999999999998766 7788999999999999999999999987
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLN 319 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (734)
. ....+..++.++.++|++||+||||+|......+...+++|+|||++..
T Consensus 139 ~----~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 188 (280)
T 1dbi_A 139 C----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY-------------------------- 188 (280)
T ss_dssp C----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT--------------------------
T ss_pred C----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCCeEEEEeeCCC--------------------------
Confidence 3 2456788888899999999999999998766667778899999985422
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceE
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 399 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T 1dbi_A 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCC
Q 044427 400 LISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479 (734)
Q Consensus 400 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 479 (734)
+.++.||++||.. ||+|||++|+++++.
T Consensus 189 -----------------------------------~~~~~~S~~G~~~--------dv~ApG~~i~s~~~~--------- 216 (280)
T 1dbi_A 189 -----------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG--------- 216 (280)
T ss_dssp -----------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT---------
T ss_pred -----------------------------------CCcCCCCCCCCCc--------eEEEecCCeEeecCC---------
Confidence 2678899999864 999999999999876
Q ss_pred CCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 480 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||||||++|||++ |.+++.+||++|++||+++... ...||||+||+.+|++
T Consensus 217 ----~~~~~~sGTS~AaP~vaG~aAll~~--p~~t~~~v~~~L~~ta~~~~~~-----~~~~G~G~vn~~~A~~ 279 (280)
T 1dbi_A 217 ----NRYAYMSGTSMASPHVAGLAALLAS--QGRNNIEIRQAIEQTADKISGT-----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHH--TTCCHHHHHHHHHHTSBCCTTB-----TTTBSSEECCHHHHHT
T ss_pred ----CCEEEccCHHHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHhCccCCCC-----CCcccCCEECHHHHhc
Confidence 7899999999999999999999987 8999999999999999998754 4679999999999986
|
| >1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-51 Score=430.88 Aligned_cols=259 Identities=29% Similarity=0.442 Sum_probs=218.6
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++++..|..+++|+||+|+|||||||++||+|+ +..+++|..+. ..+.
T Consensus 11 i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~-------~~~~ 58 (274)
T 1r0r_E 11 IKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGE-------AYNT 58 (274)
T ss_dssp TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTC-------CTTC
T ss_pred cCCHHHHhcCCCCCCCEEEEEcCCCCCCCHhHc-------------------------CCCCccccCCC-------CCCC
Confidence 455557888999999999999999999999994 33445565432 2356
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
|..||||||||||+|..+. .| +.||||+|+|+.+|+++..+ ++.+++++||+||++++++|||||||...
T Consensus 59 d~~gHGT~vAgiia~~~~~----~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 129 (274)
T 1r0r_E 59 DGNGHGTHVAGTVAALDNT----TG-----VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGAS 129 (274)
T ss_dssp CSSSHHHHHHHHHHCCSSS----SB-----CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSS
T ss_pred CCCCCHHHHHHHHHccCCC----Cc-----eEEECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence 7899999999999997321 12 38999999999999998766 67889999999999999999999999873
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC----CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP----YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSF 316 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (734)
....+..++.++.++|++||+||||+|... ..++...+++|+||+++.+
T Consensus 130 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 182 (274)
T 1r0r_E 130 ----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN----------------------- 182 (274)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT-----------------------
T ss_pred ----CcHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCccccCCCCCCcEEEEEEecCC-----------------------
Confidence 245678888899999999999999999763 2345566888888875422
Q ss_pred CCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCc
Q 044427 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPL 396 (734)
Q Consensus 317 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 396 (734)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T 1r0r_E 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCC
Q 044427 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSL 476 (734)
Q Consensus 397 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 476 (734)
+.++.||++||. |||+|||.+|+++++.
T Consensus 183 --------------------------------------~~~~~~S~~G~~--------~di~APG~~i~s~~~~------ 210 (274)
T 1r0r_E 183 --------------------------------------SNRASFSSVGAE--------LEVMAPGAGVYSTYPT------ 210 (274)
T ss_dssp --------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETT------
T ss_pred --------------------------------------CCcCccCCCCCC--------ceEEeCCCCeEeecCC------
Confidence 357889999985 4999999999999876
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||||||++|||+|++|.|++.+||++|++||+++.. +..||||+||+.+|++
T Consensus 211 -------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g~------~~~~G~G~~~~~~A~~ 274 (274)
T 1r0r_E 211 -------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp -------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCHHHHTC
T ss_pred -------CCEEEeccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCC------CCCcccCccCHHHHhC
Confidence 789999999999999999999999999999999999999999998852 6789999999999985
|
| >1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=427.86 Aligned_cols=258 Identities=30% Similarity=0.441 Sum_probs=220.7
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++++..|..+++|+||+|+|||||| .+||+|+ +...++|..+. ..+.
T Consensus 11 i~~~~a~~~g~~G~gv~VaViDtGi-~~h~~l~-------------------------~~~~~~~~~~~-------~~~~ 57 (269)
T 1gci_A 11 VQAPAAHNRGLTGSGVKVAVLDTGI-STHPDLN-------------------------IRGGASFVPGE-------PSTQ 57 (269)
T ss_dssp TTHHHHHHTTCSCTTCEEEEEESCC-CCCTTCC-------------------------EEEEEECSTTC-------CSCS
T ss_pred cCcHHHHhcCCCCCCCEEEEECCCC-CCCHhhc-------------------------ccCCcccCCCC-------CCCC
Confidence 4555678889999999999999999 8999994 33445565432 2356
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
|..||||||||||+|..+. .| +.||||+|+|+.+|+++..+ ++.+++++||+||++++++|||||||...
T Consensus 58 d~~gHGT~vAgiia~~~~~----~~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~ 128 (269)
T 1gci_A 58 DGNGHGTHVAGTIAALNNS----IG-----VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS 128 (269)
T ss_dssp CSSSHHHHHHHHHHCCCSS----SB-----CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred CCCCChHHHHHHHhcCcCC----CC-----cEEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCC
Confidence 8899999999999997321 12 38999999999999998766 67889999999999999999999999873
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNG 320 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (734)
....+..++.++.++|++||+||||+|.....++...+++|+||+++.+
T Consensus 129 ----~~~~~~~ai~~a~~~gv~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 177 (269)
T 1gci_A 129 ----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN--------------------------- 177 (269)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT---------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEecCCCCCCCCcCCccCCCeEEEEeecCC---------------------------
Confidence 2356788888899999999999999998776777778999999985422
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEE
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATL 400 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 400 (734)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T 1gci_A 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 401 ISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 401 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.||++||.. ||+|||++|+++++.
T Consensus 178 ----------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~---------- 205 (269)
T 1gci_A 178 ----------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG---------- 205 (269)
T ss_dssp ----------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT----------
T ss_pred ----------------------------------CCCCCCCCCCCCc--------ceEecCCCeEeecCC----------
Confidence 2578899999965 999999999999876
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||||||++|||+|++|+|++.+||++|++||++++. +..||||+||+.+|++
T Consensus 206 ---~~~~~~sGTS~AaP~vaG~aAll~~~~p~~t~~~v~~~L~~tA~~~g~------~~~~G~G~vn~~~A~~ 269 (269)
T 1gci_A 206 ---STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp ---TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred ---CCEEEcCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCC------CCCcccCccCHHHHcC
Confidence 789999999999999999999999999999999999999999998852 6789999999999985
|
| >1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ... | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-51 Score=428.69 Aligned_cols=261 Identities=28% Similarity=0.423 Sum_probs=218.7
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++++..|..+++|+||+|||||||||++||+|+ +..+++|..+.. ....
T Consensus 11 i~~~~~~~~g~~G~gv~VaViDtGid~~h~~l~-------------------------~~~g~~~~~~~~------~~~~ 59 (281)
T 1to2_E 11 IKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-------------------------VAGGASMVPSET------NPFQ 59 (281)
T ss_dssp TTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECCTTCC------CTTC
T ss_pred cChHHHHhcCCCCCCCEEEEEcCCCCCCCHHHc-------------------------CcCCccccCCCC------CCCC
Confidence 455557888999999999999999999999994 233445543321 2236
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
|..||||||||||+|..+. .| +.||||+|+|+.+|+++..+ +..++++++|+|+++++++|||||||...
T Consensus 60 d~~gHGT~vAgiia~~~~~----~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~ 130 (281)
T 1to2_E 60 DNNSHGTHVAGTVAALNNS----IG-----VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPS 130 (281)
T ss_dssp CSSSHHHHHHHHHHCCSSS----SS-----BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSC
T ss_pred CCCCcHHHHHHHHhccCCC----Cc-----ceeeCCCCEEEEEEEeCCCCCccHHHHHHHHHHHHHCCCcEEEECCcCCC
Confidence 7899999999999997421 12 38999999999999998766 67889999999999999999999999873
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC----CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP----YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSF 316 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~----~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (734)
....+..++.++.++|++||+||||+|... ..++...|++|+|||++..
T Consensus 131 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~Pa~~~~vi~Vga~~~~----------------------- 183 (281)
T 1to2_E 131 ----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS----------------------- 183 (281)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT-----------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCccccCcCCCCEEEEEEecCC-----------------------
Confidence 245778888889999999999999999763 2345566888888875321
Q ss_pred CCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCc
Q 044427 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPL 396 (734)
Q Consensus 317 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 396 (734)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T 1to2_E 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCC
Q 044427 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSL 476 (734)
Q Consensus 397 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 476 (734)
+.++.||++||. |||+|||.+|+++++.
T Consensus 184 --------------------------------------~~~~~fS~~G~~--------~di~APG~~i~s~~~~------ 211 (281)
T 1to2_E 184 --------------------------------------NQRASFSSVGPE--------LDVMAPGVSIQSTLPG------ 211 (281)
T ss_dssp --------------------------------------SCBCTTCCCSTT--------CCEEEECSSEEEEETT------
T ss_pred --------------------------------------CCcCCcCCCCCC--------ceEEecCCCeEeecCC------
Confidence 367889999995 4999999999999876
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCCC
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDP 554 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 554 (734)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||++++. ++.||||+||+.+|+++
T Consensus 212 -------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~g~------~~~~G~G~v~~~~a~~~ 276 (281)
T 1to2_E 212 -------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQH 276 (281)
T ss_dssp -------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTSS
T ss_pred -------CCEEecCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCC------CCCcccceecHHHHhhh
Confidence 789999999999999999999999999999999999999999998852 67899999999999985
|
| >4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-53 Score=458.67 Aligned_cols=304 Identities=20% Similarity=0.210 Sum_probs=200.0
Q ss_pred ccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CC--cccCceeE----eeeecCCCCccc
Q 044427 81 FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-AN--FTCNNKII----GARYYNSENIYE 153 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~--f~~n~ki~----g~~~~~~~~~~~ 153 (734)
..|+.+.|..+..|+||+|||||||||++||+|++..+.+....|+..++. .. +..+..+. ....+.......
T Consensus 17 ipG~~~~w~~~~g~~~V~VaViDtGiD~~Hpdf~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (357)
T 4h6x_A 17 IPGLADLHNQTLGDPQITIVIIDGDPDYTLSCFEGAEVSKVFPYWHEPAEPITPEDYAAFQSIRDQGLKGKEKEEALEAV 96 (357)
T ss_dssp STTHHHHHHHCSCCTTSEEEEEESCCCTTSGGGTTCEEEECCCTTSCCCCCCCHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred ccCHHHHHHhcCCCCCCEEEEEcCCCCCCChhHcCCCcccccccccccccccCcccccccccccCccccccccccccccc
Confidence 346777888888899999999999999999999977666666677665543 10 00000000 000000000000
Q ss_pred cCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC------CCHHHHHHHHHHHHhC
Q 044427 154 VTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG------CATADILAAFDDAIAD 227 (734)
Q Consensus 154 ~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g------~~~~~i~~ai~~ai~~ 227 (734)
..+...+.|.+||||||||||||+... .+.||||+|+|+.+|++.... ....++++||+||++.
T Consensus 97 ~~~~~~~~D~~gHGThVAGiiag~~~~----------g~~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~ 166 (357)
T 4h6x_A 97 IPDTKDRIVLNDHACHVTSTIVGQEHS----------PVFGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALEL 166 (357)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHCCTTS----------SCCCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHT
T ss_pred cCCCCCCcCCCCcHHHHHHHHhccCCC----------CceEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHc
Confidence 011123456789999999999997532 238999999999999975422 3455788999999999
Q ss_pred CCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeE
Q 044427 228 GVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGIT 307 (734)
Q Consensus 228 g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~ 307 (734)
|++|||||||.........+.+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 167 g~~Vin~S~G~~~~~~~~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~-------------- 232 (357)
T 4h6x_A 167 GANIIHCAFCRPTQTSEGEEILVQAIKKCQDNNVLIVSPTGNNSNESWCLPAVLPGTLAVGAAKVD-------------- 232 (357)
T ss_dssp TCSEEEEC-----------CHHHHHHHHHHHTTCEEEEECC---------------CEEEEEECTT--------------
T ss_pred CCCEEeeccccCCccccchhHHHHHHHHHhhCCeEEEecccCCCCCcCcCcccCCCCceEEEeccC--------------
Confidence 999999999987555566778888999999999999999999998777777778899999985432
Q ss_pred eeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCc
Q 044427 308 YPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 308 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
T Consensus 233 -------------------------------------------------------------------------------- 232 (357)
T 4h6x_A 233 -------------------------------------------------------------------------------- 232 (357)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeec
Q 044427 388 TDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILAS 467 (734)
Q Consensus 388 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa 467 (734)
+.++.||+||+.. .||||+|||.+|+++
T Consensus 233 -----------------------------------------------~~~~~fSn~G~~~-----~~~di~APG~~i~s~ 260 (357)
T 4h6x_A 233 -----------------------------------------------GTPCHFSNWGGNN-----TKEGILAPGEEILGA 260 (357)
T ss_dssp -----------------------------------------------SSBCTTCC---CT-----TTTEEEEECSSEEEC
T ss_pred -----------------------------------------------CcccccccCCCCC-----CccceeecCCCeEec
Confidence 3678999999753 589999999999999
Q ss_pred cCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCC
Q 044427 468 WSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGS 543 (734)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~ 543 (734)
++.. +.|..++|||||||||||++|||++ ++|.|++++||++|++||++++..... .+.+|||
T Consensus 261 ~~~~------------~~~~~~sGTS~AaP~vaG~~All~s~~~~~~~~lt~~~v~~~L~~tA~~~~~~~~~-~~~~~G~ 327 (357)
T 4h6x_A 261 QPCT------------EEPVRLTGTSMAAPVMTGISALLMSLQVQQGKPVDAEAVRTALLKTAIPCDPEVVE-EPERCLR 327 (357)
T ss_dssp CTTC------------SCCEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC---------------CTT
T ss_pred cCCC------------CcccccCcHHHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHhhCccCCCCCCC-Cccccee
Confidence 8762 6678899999999999999999995 466899999999999999987654321 3678999
Q ss_pred CccCccccCC
Q 044427 544 GHINPAQAID 553 (734)
Q Consensus 544 G~vn~~~Al~ 553 (734)
|+||+.+|++
T Consensus 328 G~vn~~~A~~ 337 (357)
T 4h6x_A 328 GFVNIPGAMK 337 (357)
T ss_dssp CBCCHHHHHH
T ss_pred EEecHHHHHH
Confidence 9999999987
|
| >1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-50 Score=424.53 Aligned_cols=260 Identities=25% Similarity=0.385 Sum_probs=220.5
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++++..|... +|+||+|||||||||++||+|.+ +++..++|.++. ..+.
T Consensus 18 i~~~~aw~~~-~G~gv~VaViDtGvd~~h~~l~~-----------------------~~~~~~~~~~~~-------~~~~ 66 (279)
T 1thm_A 18 IQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFVDND-------STPQ 66 (279)
T ss_dssp TTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT-----------------------TEEEEEETTTTB-------SCCC
T ss_pred CChHHHHhcC-CCCCCEEEEEccCCCCCCcchhc-----------------------CccccccccCCC-------CCCC
Confidence 4555567554 79999999999999999999963 355666776543 3457
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~~~ 240 (734)
|..+|||||||||+|...++ .| +.||||+|+|+.+|+++..+ ++..++++||+||+++|++|||||||...
T Consensus 67 d~~gHGT~vAgiia~~~~n~---~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~ 138 (279)
T 1thm_A 67 NGNGHGTHCAGIAAAVTNNS---TG-----IAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTV 138 (279)
T ss_dssp CSSSHHHHHHHHHHCCCSSS---SS-----CCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSS
T ss_pred CCCCcHHHHHHHHhCccCCC---Cc-----cEEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCC
Confidence 88999999999999986432 12 38999999999999998766 67889999999999999999999999873
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNG 320 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (734)
....+..++.++.++|++||+||||+|.....++...+++|+|||++.+
T Consensus 139 ----~~~~l~~ai~~a~~~gvlvV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 187 (279)
T 1thm_A 139 ----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN--------------------------- 187 (279)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT---------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEEeCCC---------------------------
Confidence 2456788888999999999999999998776777778899999985422
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEE
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATL 400 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 400 (734)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 1thm_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 401 ISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 401 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.||++||.. ||+|||++|+++++.
T Consensus 188 ----------------------------------~~~~~fS~~G~~~--------dv~APG~~i~s~~~~---------- 215 (279)
T 1thm_A 188 ----------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT---------- 215 (279)
T ss_dssp ----------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT----------
T ss_pred ----------------------------------CCcCCcCCCCCce--------EEEEcCCCeEEEeCC----------
Confidence 2578899999864 999999999999876
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||||||++||| ++|.+++++||++|++||+++...+ ..||||+||+.+|++
T Consensus 216 ---~~~~~~sGTS~AaP~VaG~aAll--~~p~~t~~~v~~~L~~ta~~~~~~~-----~~~G~G~vn~~~A~~ 278 (279)
T 1thm_A 216 ---STYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTADKISGTG-----TYWAKGRVNAYKAVQ 278 (279)
T ss_dssp ---TEEEEECSHHHHHHHHHHHHHHH--HTTTCCHHHHHHHHHHTCBCCTTBT-----TTBSSEECCHHHHHH
T ss_pred ---CCEEEcccHHHHHHHHHHHHHHH--HCCCcCHHHHHHHHHHhCccCCCCC-----ccccCCeeCHHHHhc
Confidence 78999999999999999999999 5799999999999999999987653 579999999999975
|
| >2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-53 Score=481.92 Aligned_cols=301 Identities=19% Similarity=0.223 Sum_probs=41.3
Q ss_pred CcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccccccCCCcccccccc------CccCCCCCCCCEEEEEc
Q 044427 30 KESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTRSWDFMGFSK------GKLSSSQEGSVIIGLLD 103 (734)
Q Consensus 30 ~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~~~~s~~~~g~~~------~~~~~~~G~GV~VgVID 103 (734)
..++++.|+++|+||+++++.+++++|+++|+|++|+|++.+... ...|.+-.+.. .|..+.+|+||+|+|||
T Consensus 108 ~~~v~~~y~~~~~Gfsv~l~~~~l~~L~~~P~V~~Vepd~~v~~~-~~pWgL~~i~~~~~~~~~w~~~~~G~GV~VaVID 186 (692)
T 2p4e_P 108 LTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFAQ-SIPWNLERITPPRYRADEYQPPDGGSLVEVYLLD 186 (692)
T ss_dssp CCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEEC-----------------------------------
T ss_pred ccceeeEeeccccEEEEEeCHHHHHHHHcCCCceEEEeccccccC-CCCcchhhcccccccccccccCCCCCCcEEEEEc
Confidence 468999999999999999999999999999999999999977652 23455433322 45678899999999999
Q ss_pred cCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhccCCCCCCc
Q 044427 104 TGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHAS 183 (734)
Q Consensus 104 tGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~ 183 (734)
||||++||+|.+... |. .+++..+.+. ......+.|..||||||||||+|+.
T Consensus 187 TGId~~HpdL~gr~~------~~----------------~~~~~~d~dg-~~~~~~~~D~~GHGTHVAGiIAg~~----- 238 (692)
T 2p4e_P 187 TSIQSDHREIEGRVM------VT----------------DFENVPEEDG-TRFHRQASKCDSHGTHLAGVVSGRD----- 238 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCCChhhcCceE------ec----------------ccccccCCCC-CcccCCCCCCCCcHHHhhhHhhcCC-----
Confidence 999999999975411 10 0011100000 0001346789999999999999873
Q ss_pred cccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC------CCcEEEEccCCCCCCCCCCCHHHHHHHHH
Q 044427 184 YYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD------GVDIISVSLGSDFPFEYFEDPIAIGSFHA 256 (734)
Q Consensus 184 ~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~------g~dVINlSlG~~~~~~~~~~~~~~a~~~a 256 (734)
.||||+|+|+++|++++.| ++.+++++||+|++++ +++|||||||+.. ...+..++.++
T Consensus 239 ---------~GVAP~A~L~~vKVl~~~G~g~~s~ii~aI~~a~~~~~~~~~g~~VINmSlGg~~-----s~~l~~Ai~~A 304 (692)
T 2p4e_P 239 ---------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGGY-----SRVLNAACQRL 304 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------CccCCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhhhhcccCCceEEEecCCCCC-----cHHHHHHHHHH
Confidence 7999999999999998876 6788999999999986 8999999999762 24566667788
Q ss_pred HhCCcEEEEcCCCCCCCCCC-cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccC
Q 044427 257 MKYGILTSNSAGNSGPDPYS-VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYS 335 (734)
Q Consensus 257 ~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~ 335 (734)
.++|++||+||||+|..... .+...|++|+|||++.+...
T Consensus 305 ~~~GVlvVaAAGN~G~~~~~~sPA~~~~vItVGA~d~~~~~--------------------------------------- 345 (692)
T 2p4e_P 305 ARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQDQP--------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHCCCEEEEECCCCCCCCCccCcccCCCEEEEEEEcCCCCc---------------------------------------
Confidence 89999999999999976543 35667999999996543100
Q ss_pred CCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhc
Q 044427 336 AGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRS 415 (734)
Q Consensus 336 ~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~ 415 (734)
T Consensus 346 -------------------------------------------------------------------------------- 345 (692)
T 2p4e_P 346 -------------------------------------------------------------------------------- 345 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccch
Q 044427 416 TEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMS 495 (734)
Q Consensus 416 ~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmA 495 (734)
...-+.||+||| ||||+|||++|+++++.. .+.|..++|||||
T Consensus 346 ------------------a~~ss~fSn~G~--------~vDI~APG~~I~St~~~~-----------~~~y~~~SGTSmA 388 (692)
T 2p4e_P 346 ------------------VTLGTLGTNFGR--------CVDLFAPGEDIIGASSDC-----------STCFVSQSGTSQA 388 (692)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ------------------cccccccCCCCC--------ceeEEecCCcEEeeccCC-----------CCceEeccchHHH
Confidence 000123899998 469999999999998762 2578999999999
Q ss_pred hhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044427 496 CPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 496 aP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~ 529 (734)
||||||++|||+|++|+|+|++||++|++||.+.
T Consensus 389 APhVAG~aALlls~~P~ltp~qVk~~L~~tA~~~ 422 (692)
T 2p4e_P 389 AAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 422 (692)
T ss_dssp ----------------------------------
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999764
|
| >2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=433.81 Aligned_cols=267 Identities=25% Similarity=0.325 Sum_probs=218.1
Q ss_pred ccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC
Q 044427 81 FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP 160 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~ 160 (734)
.++++..|..+++|+||+|||||||||++||+|.+ ++..+++|..++.. +....
T Consensus 27 ~i~~~~aw~~~~~G~gv~VaViDtGid~~Hp~l~~-----------------------~~~~~~~~~~~~~~---~~~~~ 80 (327)
T 2x8j_A 27 IVEAPAVWRASAKGAGQIIGVIDTGCQVDHPDLAE-----------------------RIIGGVNLTTDYGG---DETNF 80 (327)
T ss_dssp HTTHHHHHHHHGGGTTCEEEEEESCCCTTCTTTGG-----------------------GEEEEEECSSGGGG---CTTCC
T ss_pred hcChHHHHhcCCCCCCCEEEEEcCCCCCCChhHhh-----------------------cccCCccccCCCCC---CCCCC
Confidence 35666678888999999999999999999999963 35566667654321 11235
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHh------CCCcEEE
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIA------DGVDIIS 233 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~------~g~dVIN 233 (734)
.|..||||||||||+|..+. .| +.||||+|+|+.+|+++..+ ++.+++++||+||++ .+++|||
T Consensus 81 ~d~~gHGT~VAgiia~~~~~----~g-----~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin 151 (327)
T 2x8j_A 81 SDNNGHGTHVAGTVAAAETG----SG-----VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIIT 151 (327)
T ss_dssp CCSSSHHHHHHHHHHCCCCS----SB-----CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEE
T ss_pred CCCCCchHHHHHHHhccCCC----CC-----cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEE
Confidence 68899999999999998421 12 38999999999999998776 678899999999999 8999999
Q ss_pred EccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-----CCcCCCCCceEEecccccCceeEEEEEeCCCeEe
Q 044427 234 VSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-----YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITY 308 (734)
Q Consensus 234 lSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-----~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~ 308 (734)
||||... ....+..++.++.++|++||+||||+|... ...+...+++|+|||++.+
T Consensus 152 ~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~~~~~Pa~~~~vi~Vga~~~~--------------- 212 (327)
T 2x8j_A 152 MSLGGPT----DSEELHDAVKYAVSNNVSVVCAAGNEGDGREDTNEFAYPAAYNEVIAVGAVDFD--------------- 212 (327)
T ss_dssp ECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCCT---------TCBTTTSTTSEEEEEECTT---------------
T ss_pred ECCCcCC----CCHHHHHHHHHHHHCCCeEEEEcCCCCCCCCCCCceeccccCCCEEEEEEECCC---------------
Confidence 9999873 235677888889999999999999999753 2445567899999885422
Q ss_pred eeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCcc
Q 044427 309 PGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFT 388 (734)
Q Consensus 309 ~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 388 (734)
T Consensus 213 -------------------------------------------------------------------------------- 212 (327)
T 2x8j_A 213 -------------------------------------------------------------------------------- 212 (327)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeecc
Q 044427 389 DLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASW 468 (734)
Q Consensus 389 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~ 468 (734)
+.++.||++||. |||+|||++|++++
T Consensus 213 ----------------------------------------------~~~~~fS~~G~~--------~di~APG~~i~s~~ 238 (327)
T 2x8j_A 213 ----------------------------------------------LRLSDFTNTNEE--------IDIVAPGVGIKSTY 238 (327)
T ss_dssp ----------------------------------------------CCBSCC---CCC--------CSEEEECSSEEEEC
T ss_pred ----------------------------------------------CCCCCccCCCCC--------ceEecCcCceEeec
Confidence 367889999984 59999999999998
Q ss_pred CCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhh-----CCCCCHHHHHHHHHhccccccCCCcccCCCCCCC
Q 044427 469 SPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAA-----HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGS 543 (734)
Q Consensus 469 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-----~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~ 543 (734)
+. +.|..++|||||||+|||++|||+|+ +|.|++.+||++|++||++++. .+..+||
T Consensus 239 ~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~~~~~~p~ls~~~v~~~L~~tA~~~g~-----~~~~~G~ 300 (327)
T 2x8j_A 239 LD-------------SGYAELSGTAMAAPHVAGALALIINLAEDAFKRSLSETEIYAQLVRRATPIGF-----TAQAEGN 300 (327)
T ss_dssp ST-------------TCEEEEESGGGTHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHTTEECCSS-----CHHHHTT
T ss_pred CC-------------CCEEeecCHHHHHHHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHhCccCCC-----CCCceee
Confidence 76 67999999999999999999999999 9999999999999999998753 2778999
Q ss_pred CccCccccCC
Q 044427 544 GHINPAQAID 553 (734)
Q Consensus 544 G~vn~~~Al~ 553 (734)
|+||+.+|++
T Consensus 301 G~vd~~~A~~ 310 (327)
T 2x8j_A 301 GFLTLDLVER 310 (327)
T ss_dssp CEECTTHHHH
T ss_pred eEECHHHHHH
Confidence 9999999988
|
| >3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-50 Score=427.16 Aligned_cols=265 Identities=22% Similarity=0.247 Sum_probs=211.7
Q ss_pred CCCC-CCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 91 SSQE-GSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 91 ~~~G-~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
.++| +||+|||||||||++||+|.+. .+..+++.... ......|..|||||
T Consensus 3 ~l~G~~gV~VaViDtGid~~Hpdl~g~-----------------------~~~~~~~~~~~-----~~~~d~~~~gHGT~ 54 (282)
T 3zxy_A 3 SLKGDHNIRVAILDGPVDIAHPCFQGA-----------------------DLTVLPTLAPT-----AARSDGFMSAHGTH 54 (282)
T ss_dssp TCCCCTTSEEEEEESCCCTTSGGGTTC-----------------------EEEECCCSSCC-----CCCTTCHHHHHHHH
T ss_pred CCcCCCCCEEEEEcCCCCCCChhHCCC-----------------------eeecCcCCCCC-----CCCCCCCCCCcccc
Confidence 4678 7999999999999999999743 11222222211 11223345789999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccCCCCCCCCCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG~~~~~~~~~~ 247 (734)
|||||+|+... .+.||||+|+|+.+|++.+.+ .+..++++||+||++++++|||||||..........
T Consensus 55 VAGiiag~~~~----------~~~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~~~~~~ 124 (282)
T 3zxy_A 55 VASIIFGQPET----------SVPGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDFGEADG 124 (282)
T ss_dssp HHHHHHCCTTS----------SSCCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESSSCCCH
T ss_pred eeehhhccCCc----------eeeeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCccccccccccH
Confidence 99999997532 238999999999999986543 677889999999999999999999997643344556
Q ss_pred HHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCceeeeEE
Q 044427 248 PIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIW 327 (734)
Q Consensus 248 ~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~ 327 (734)
.+..++.++.++|+++|+||||+|......+...+++|+|||.+.+
T Consensus 125 ~~~~ai~~a~~~gi~vV~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~---------------------------------- 170 (282)
T 3zxy_A 125 WLENAVSLCRQNNVLLVAAAGNNGCDCLHVPAALPAVLAVGAMDDH---------------------------------- 170 (282)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSCSSCEEETTTSTTCEEEEEECTT----------------------------------
T ss_pred HHHHHHHHHhhcCceEEEecccCCCccccCccccceeEEEEEEcCC----------------------------------
Confidence 6788888899999999999999998777777778999999985422
Q ss_pred cCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEeeccchH
Q 044427 328 GGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLISKENGQ 407 (734)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~ 407 (734)
T Consensus 171 -------------------------------------------------------------------------------- 170 (282)
T 3zxy_A 171 -------------------------------------------------------------------------------- 170 (282)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCCCcceE
Q 044427 408 DILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFN 487 (734)
Q Consensus 408 ~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~ 487 (734)
+.++.||+||+.. .||||+|||.+|+++++. +.|.
T Consensus 171 ---------------------------~~~~~~S~~~~~~-----~~~di~ApG~~i~s~~~~-------------~~~~ 205 (282)
T 3zxy_A 171 ---------------------------GHPLDFSNWGSTY-----EQQGILAPGEDILGAKPG-------------GGTE 205 (282)
T ss_dssp ---------------------------SCBCSSSCCCHHH-----HHHEEEEECSSEEEECTT-------------SCEE
T ss_pred ---------------------------CccccccCCCCCc-----cccceeccCcceeeecCC-------------Ccee
Confidence 3577899998753 588999999999999886 7899
Q ss_pred EeccccchhhHHHHHHHHHHhhC----CCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 488 IISGTSMSCPHASGSAAYVKAAH----PNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 488 ~~sGTSmAaP~VAG~aALl~q~~----P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
.++|||||||||||++|||+|++ |.++|++||++|++||++++.... .....+|+|+||+.+|++
T Consensus 206 ~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~vk~~L~~tA~~~~~~~~-~~~~~~G~G~ln~~~A~~ 274 (282)
T 3zxy_A 206 RLSGTAFATPIVSGVAALLLSEQVRRGETPDPQKVRQLLLQSALPCDDDAP-EQARRCLAGRLNVSGAFT 274 (282)
T ss_dssp EECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHCBCC--------CGGGTTCBCCHHHHHH
T ss_pred ecCCCcccchHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHhhCeeCCCCCC-CccCceeeeEeCHHHHHH
Confidence 99999999999999999999874 789999999999999998765321 236789999999999986
|
| >2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-49 Score=420.87 Aligned_cols=280 Identities=29% Similarity=0.358 Sum_probs=224.4
Q ss_pred ccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC
Q 044427 81 FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP 160 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~ 160 (734)
.++++..|..+++|+||+|||||||||++||+|.+. +...++|...... .....
T Consensus 12 ~i~~~~~w~~~~~G~gv~VaViDtGvd~~H~~l~~~-----------------------~~~~~~~~~~~~~---~~~~~ 65 (310)
T 2ixt_A 12 AIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTP---INNSC 65 (310)
T ss_dssp HHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSC---EETCC
T ss_pred hcCchhhhhccCCCCCcEEEEEecCCCCCCHHHhhc-----------------------ccccccccCCCCC---CCCCC
Confidence 366677898999999999999999999999999642 4455666654211 11345
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCC-----cEEEE
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGV-----DIISV 234 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~-----dVINl 234 (734)
.|..||||||||||+|....+ ...+.||||+|+|+.+|++...+ .+.+++++||+||+++++ +||||
T Consensus 66 ~d~~gHGT~vAgiia~~~~~n-------~~g~~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~ 138 (310)
T 2ixt_A 66 TDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM 138 (310)
T ss_dssp CCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCCCHHHHHHHHhccCCCC-------CCceEEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEE
Confidence 678999999999999985221 11238999999999999998766 678899999999999887 99999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC--CCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeee
Q 044427 235 SLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP--YSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312 (734)
Q Consensus 235 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~--~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (734)
|||... ....+..++.++.++|++||+||||+|... ...+...+++|+|||++...
T Consensus 139 S~G~~~----~~~~~~~ai~~a~~~gv~vV~AAGN~g~~~~~~~~Pa~~~~vi~Vga~~~~~------------------ 196 (310)
T 2ixt_A 139 SLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQ------------------ 196 (310)
T ss_dssp CCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEE------------------
T ss_pred cCCCCC----CCHHHHHHHHHHHhCCcEEEEcCCCCCCCCCCCCCcccCCCeeEEEeccccc------------------
Confidence 999873 245677888889999999999999999764 34555678999999854210
Q ss_pred cccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCccc
Q 044427 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAF 392 (734)
Q Consensus 313 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 392 (734)
T Consensus 197 -------------------------------------------------------------------------------- 196 (310)
T 2ixt_A 197 -------------------------------------------------------------------------------- 196 (310)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCC--ceeeccCCCCCCCC----CCCCCCcEEecCCCEee
Q 044427 393 SYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAP--KVVSFSSRGPNPIT----VDILKPDITAPGVDILA 466 (734)
Q Consensus 393 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~--~~a~fSS~Gpt~~~----~~~~KPDI~APG~~I~s 466 (734)
..+ .++.||++||.... ..+.||||+|||.+|++
T Consensus 197 ----------------------------------------~~g~~~~~~~S~~G~~~~~g~~~~~~~~~di~ApG~~i~s 236 (310)
T 2ixt_A 197 ----------------------------------------QNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYS 236 (310)
T ss_dssp ----------------------------------------ETTEEEECTTSCCCCTTTTTSSSCCTTCCCEEEECSSEEE
T ss_pred ----------------------------------------cCCCeeeccccCCCCccCCccccccCCCeeEECCCCCEee
Confidence 001 57889999995311 12359999999999999
Q ss_pred ccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCC----cccCCCCCC
Q 044427 467 SWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRK----QEDLEFAYG 542 (734)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~----~~~~~~~~G 542 (734)
+++. +.|..++|||||||||||++|||+|++|.|++.+||++|++||++.+..+ .+..+..+|
T Consensus 237 ~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~a~~g~d~~~G 303 (310)
T 2ixt_A 237 TWYN-------------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASG 303 (310)
T ss_dssp ECTT-------------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTB
T ss_pred ecCC-------------CCEEeeccHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHhhCcccCCCCCcccccCCccccc
Confidence 9876 67999999999999999999999999999999999999999999877432 112588999
Q ss_pred CCccCc
Q 044427 543 SGHINP 548 (734)
Q Consensus 543 ~G~vn~ 548 (734)
||++|+
T Consensus 304 ~G~~~v 309 (310)
T 2ixt_A 304 FGFARV 309 (310)
T ss_dssp TCBCCC
T ss_pred cceeec
Confidence 999986
|
| >4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=429.71 Aligned_cols=276 Identities=24% Similarity=0.256 Sum_probs=221.1
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
++.|++++|.....++||+|||||||||++||+|.+. .+....++..+. ...
T Consensus 6 ~i~G~~~aW~~~~G~~gV~VaViDtGid~~Hpdl~g~----------------------~~~~~~~~~~~~------~~~ 57 (306)
T 4h6w_A 6 NIPGLKKLWSETRGDPKICVAVLDGIVDQNHPCFIGA----------------------DLTRLPSLVSGE------ANA 57 (306)
T ss_dssp -CTTHHHHHHHCSCCTTCEEEEESSCCCTTSGGGTTC----------------------EEEECC---------------
T ss_pred CCcCHHHHHhhhCCCCCCEEEEEcCCCCCCChhHcCC----------------------cccCCCcccCCC------CCC
Confidence 3457777887766679999999999999999999743 222333333321 123
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC--CCHHHHHHHHHHHHhCCCcEEEEccC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG--CATADILAAFDDAIADGVDIISVSLG 237 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g--~~~~~i~~ai~~ai~~g~dVINlSlG 237 (734)
..|..||||||||||+|+... .+.||||+|+|+.+|++.+.+ .+..++++||+||++++++|||+|||
T Consensus 58 ~~d~~gHGThVAGiiag~~~~----------~~~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g 127 (306)
T 4h6w_A 58 NGSMSTHGTHVASIIFGQHDS----------PVTGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAG 127 (306)
T ss_dssp -CCCCHHHHHHHHHHHCCTTS----------SSCCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred CCCCCCchHHHHHHHHccccC----------CcceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeecccc
Confidence 456789999999999997522 238999999999999987643 67788999999999999999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 238 SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
...........+..++.++.++|++||+||||+|......+...+++++|||++..
T Consensus 128 ~~~~~~~~~~~~~~ai~~a~~~gi~vvaaagn~g~~~~~~Pa~~~~vi~Vga~~~~------------------------ 183 (306)
T 4h6w_A 128 QLTDAGEADTWLEKAIQLCQENNVLLIAATGNDGCECLHVPASLPTVLAVGAMDDQ------------------------ 183 (306)
T ss_dssp EEESSSCCCHHHHHHHHHHHHTTCEEEEECCSSSSBCEEETTTSTTCEEEEEECTT------------------------
T ss_pred ccccCCCccHHHHHHHHHHHHcCCeEEEecCCCCcccccccccCCcceEEEEecCC------------------------
Confidence 76444455667888888999999999999999998776667777889999885422
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 184 -------------------------------------------------------------------------------- 183 (306)
T 4h6w_A 184 -------------------------------------------------------------------------------- 183 (306)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
+.++.||++|+.. .||||+|||.+|+++++.
T Consensus 184 -------------------------------------~~~~~~s~~g~~~-----~~~di~APG~~i~s~~~~------- 214 (306)
T 4h6w_A 184 -------------------------------------GKPVDFSNWGDAY-----QKQGILAPGKDILGAKPN------- 214 (306)
T ss_dssp -------------------------------------SCBCSSSCBCHHH-----HHHEEEEECSSEEEECTT-------
T ss_pred -------------------------------------CCccccccccCCc-----CcceeecCCcCcccccCC-------
Confidence 2567889998653 588999999999999886
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||||||++|||++ ++|.|+|++||++|++||++++..+.. ....||+|+||+.+|++
T Consensus 215 ------~~~~~~sGTS~AaP~VaG~~All~s~~~~~~p~~t~~~v~~~L~~tA~~~~~~~~~-~~~~~G~G~ln~~~Av~ 287 (306)
T 4h6w_A 215 ------GGTIRLSGTSFATPIVSGVAALLLSLQIKRGEKPDPQKVKNALLASATPCNPKDTD-DQSRCLMGKLNILDAIE 287 (306)
T ss_dssp ------SCEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCCTTTCS-CGGGGTTCBCCHHHHHH
T ss_pred ------CceeccCCCcchhHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHhhCccCCCCCCC-CCCCcceeecCHHHHHH
Confidence 7899999999999999999999986 469999999999999999998765432 24579999999999987
|
| >2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-50 Score=428.04 Aligned_cols=268 Identities=26% Similarity=0.362 Sum_probs=221.8
Q ss_pred ccccccCccCCCCCC--CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC
Q 044427 81 FMGFSKGKLSSSQEG--SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH 158 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~ 158 (734)
.++++..|..+ +|+ ||+|||||||||++||+|.+ ++...++|..+... ....
T Consensus 14 ~i~~~~aw~~~-~G~~~gv~VaViDtGid~~Hp~l~~-----------------------~~~~~~~~~~~~~~--~~~~ 67 (320)
T 2z30_A 14 RVKAPSVWSIT-DGSVSVIQVAVLDTGVDYDHPDLAA-----------------------NIAWCVSTLRGKVS--TKLR 67 (320)
T ss_dssp HTTCGGGTTTC-CSCCTTCEEEEEESCBCTTCTTTGG-----------------------GEEEEEECGGGCCB--CCHH
T ss_pred hcChHHHHHhc-CCCcCCeEEEEECCCCCCCChhHhc-----------------------ccccCccccCCccC--CCCC
Confidence 35666788776 999 99999999999999999963 24445555443210 0001
Q ss_pred CCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC----------
Q 044427 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD---------- 227 (734)
Q Consensus 159 ~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~---------- 227 (734)
...|..||||||||||+|..+. .| +.||||+|+|+.+|+++..+ ++.+++++||+||+++
T Consensus 68 ~~~d~~gHGT~vAgiia~~~n~----~g-----~~GvAp~a~l~~~~v~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~~ 138 (320)
T 2z30_A 68 DCADQNGHGTHVIGTIAALNND----IG-----VVGVAPGVQIYSVRVLDARGSGSYSDIAIGIEQAILGPDGVADKDGD 138 (320)
T ss_dssp HHBCSSSHHHHHHHHHHCCSSS----BS-----CCCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHTTTTCSCTTSS
T ss_pred CCCCCCCCHHHHHHHHHcccCC----Cc-----eEeeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHhCcccccccccc
Confidence 2357889999999999997321 12 38999999999999998776 6788999999999987
Q ss_pred ----------CCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeE
Q 044427 228 ----------GVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFV 297 (734)
Q Consensus 228 ----------g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~ 297 (734)
+++|||||||... ....+..++.++.++|++||+||||+|.....++...|++|+|||++.+
T Consensus 139 ~~~~~~~~~~~~~Vin~S~G~~~----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~Pa~~~~vi~Vga~~~~---- 210 (320)
T 2z30_A 139 GIIAGDPDDDAAEVISMSLGGPA----DDSYLYDMIIQAYNAGIVIVAASGNEGAPSPSYPAAYPEVIAVGAIDSN---- 210 (320)
T ss_dssp SCCTTCTTSCCCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT----
T ss_pred cccccccccCCceEEEecCCCCC----CCHHHHHHHHHHHHCCCEEEEeCCCCCCCCCCCcccCCCeEEEEeeCCC----
Confidence 9999999999873 2456777888899999999999999998766777788999999985422
Q ss_pred EEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCc
Q 044427 298 AQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNG 377 (734)
Q Consensus 298 ~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga 377 (734)
T Consensus 211 -------------------------------------------------------------------------------- 210 (320)
T 2z30_A 211 -------------------------------------------------------------------------------- 210 (320)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcE
Q 044427 378 LGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDI 457 (734)
Q Consensus 378 ~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI 457 (734)
+.++.||++|| +|
T Consensus 211 ---------------------------------------------------------~~~~~~S~~g~----------~v 223 (320)
T 2z30_A 211 ---------------------------------------------------------DNIASFSNRQP----------EV 223 (320)
T ss_dssp ---------------------------------------------------------SCBCTTSCSSC----------SE
T ss_pred ---------------------------------------------------------CCcCcccCCCC----------CE
Confidence 25788999987 78
Q ss_pred EecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhC-------------CCCCHHHHHHHHHh
Q 044427 458 TAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAH-------------PNWSPSSIKSALMT 524 (734)
Q Consensus 458 ~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~-------------P~ls~~~vk~~L~~ 524 (734)
+|||.+|+++++. +.|..++|||||||||||++|||+|++ |.|++.+||++|++
T Consensus 224 ~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~~~~~~p~lt~~~v~~~L~~ 290 (320)
T 2z30_A 224 SAPGVDILSTYPD-------------DSYETLMGTAMATPHVSGVVALIQAAYYQKYGKILPVGTFDDISKNTVRGILHI 290 (320)
T ss_dssp EEECSSEEEEETT-------------TEEEEECSHHHHHHHHHHHHHHHHHHHHHHHSSCCCCCCTTCCSTTSHHHHHHH
T ss_pred EeCCCCeEEeccC-------------CCeEeccCHHHHHHHHHHHHHHHHHhchhhcccccccccCCCCCHHHHHHHHHh
Confidence 9999999999876 789999999999999999999999998 99999999999999
Q ss_pred ccccccCCCcccCCCCCCCCccCccccCCC
Q 044427 525 TAYVMDSRKQEDLEFAYGSGHINPAQAIDP 554 (734)
Q Consensus 525 TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~ 554 (734)
||+++...+. +..||||+||+.+|++.
T Consensus 291 ta~~~~~~g~---~~~~G~G~vd~~~A~~~ 317 (320)
T 2z30_A 291 TADDLGPTGW---DADYGYGVVRAALAVQA 317 (320)
T ss_dssp HSBCCSSSSS---BTTTBTCBCCHHHHHHH
T ss_pred hCccCCCCCC---CCCcCCceeCHHHHHHH
Confidence 9999876553 78899999999999874
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=464.29 Aligned_cols=412 Identities=21% Similarity=0.202 Sum_probs=272.4
Q ss_pred CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHHHHHhc
Q 044427 96 SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAA 175 (734)
Q Consensus 96 GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThVAGi~A 175 (734)
+|+|||||||+|.+|++.... ..|+...+...| .+.+.+..++.++.+ ......|++|||||||||||
T Consensus 214 ~V~VAVIDTG~d~DL~d~~~l------~~Y~~~~dyg~F--~D~v~~~~n~~Ddgd----~~~~v~D~~GHGThVAGIIA 281 (1354)
T 3lxu_X 214 DGWLTIVDTTEQGDLDQALRI------GEYSRTHETRNV--DDFLSISVNVHDEGN----VLEVVGMSSPHGTHVSSIAS 281 (1354)
T ss_dssp SSCEEEECSSSSCCSSCSEEE------ECTTTTCCCCEE--SSSCEEEEEEEGGGT----EEEEEECCCHHHHHHHHHHC
T ss_pred CEEEEEEeCCCCCCccccccc------cccccccccccc--ccccCCCCccCCCCC----ccccCCCCCCcHHHHHHHHh
Confidence 699999999998766654210 011110000111 112222223322211 00122478899999999999
Q ss_pred cCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHh-----CCCcEEEEccCCCCCCCCCCC
Q 044427 176 GREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIA-----DGVDIISVSLGSDFPFEYFED 247 (734)
Q Consensus 176 G~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~-----~g~dVINlSlG~~~~~~~~~~ 247 (734)
|.. ++ ..+.||||+|+|+.+|+++..+ .+..+++.+|.+|++ .|++|||||||... .....+
T Consensus 282 a~~-N~--------~g~~GVAP~AkI~~vKVld~~~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~-~~~~~~ 351 (1354)
T 3lxu_X 282 GNH-SS--------RDVDGVAPNAKIVSMTIGDGRLGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHA-NWSNSG 351 (1354)
T ss_dssp CCC-SS--------SSSCCSCTTCEEEEEECBCTTTSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCC-SCSSCC
T ss_pred cCC-CC--------CCceeecCCCEEEEEEeccCCCCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCC-CCCccH
Confidence 986 21 1238999999999999987643 256778888888887 79999999999984 223356
Q ss_pred HHHHHHHHHH-hCCcEEEEcCCCCCCCCCCc--CCC--CCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCce
Q 044427 248 PIAIGSFHAM-KYGILTSNSAGNSGPDPYSV--SNF--APWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGIS 322 (734)
Q Consensus 248 ~~~~a~~~a~-~~Gi~vV~AAGN~G~~~~~~--~~~--ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~ 322 (734)
.+..++.++. ++|++||+||||+|....++ +.. ++++|+|||++...........
T Consensus 352 ~l~~aI~~A~~~~GVlVVaAAGN~G~~~~ti~~PA~~ss~~VItVGAtd~~~~~~a~ys~-------------------- 411 (1354)
T 3lxu_X 352 RIGELMNEVVNKYGVVWVASAGNHGPALCTVGTPPDISQPSLIGVGAYVSPQMMEAEYAM-------------------- 411 (1354)
T ss_dssp HHHHHHHHHHHTSCCEEEEECCSCCSSSSCCCTTTCSSSSCEEEEEEECCTTCCCC------------------------
T ss_pred HHHHHHHHHHHhCCcEEEEeCCCCCCCCCccCCcccccCCceEEEEeecCCCCccccccc--------------------
Confidence 7777787776 89999999999999865543 332 6999999997643211000000
Q ss_pred eeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEee
Q 044427 323 YPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLIS 402 (734)
Q Consensus 323 ~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~ 402 (734)
.
T Consensus 412 ---------------------~---------------------------------------------------------- 412 (1354)
T 3lxu_X 412 ---------------------R---------------------------------------------------------- 412 (1354)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ---------------------c----------------------------------------------------------
Confidence 0
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCCC
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTR 482 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~~ 482 (734)
....+.++.||||||+. ++++||||+|||++|+++....
T Consensus 413 ----------------------------~~~~g~~asFSS~GPt~--dg~~KpDIaAPG~~I~St~~~~----------- 451 (1354)
T 3lxu_X 413 ----------------------------EKLPGNVYTWTSRDPCI--DGGQGVTVCAPGGAIASVPQFT----------- 451 (1354)
T ss_dssp ---------------------------------CCCCCCCCSCCS--SSSCCEEEEEEC---------------------
T ss_pred ----------------------------cCCCCccccccCCCCCc--cCCCcceEEecCceEEEeecCC-----------
Confidence 01124789999999998 8999999999999999975532
Q ss_pred CcceEEeccccchhhHHHHHHHHHHh----hCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCCCceec
Q 044427 483 SVSFNIISGTSMSCPHASGSAAYVKA----AHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVY 558 (734)
Q Consensus 483 ~~~y~~~sGTSmAaP~VAG~aALl~q----~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~~~lv~ 558 (734)
.+.|..++|||||||||||++|||++ .+|.|++.+||++|++||++++.. .++.||||+||+.+|++..+.+
T Consensus 452 ~~~y~~~SGTSmAAP~VAGvAALLLSalkq~~P~LTp~qVk~lL~~TA~~~~~~----~~~~~G~GlLDa~~AV~~a~~~ 527 (1354)
T 3lxu_X 452 MSKSQLMNGTSMAAPHVAGAVALLISGLKQQNIEYSPYSIKRAISVTATKLGYV----DPFAQGHGLLNVEKAFEHLTEH 527 (1354)
T ss_dssp -----CCCCGGGCHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHTTSBCCTTS----CTTTSSSSBCCHHHHHHHHHTT
T ss_pred CCceecCCCCCHHHHHHHHHHHHHHHhhHhhCCCCCHHHHHHHHHHhCccCCCC----CcccccCCEeCHHHHHHHHHhc
Confidence 26789999999999999999999986 899999999999999999998753 2678999999999999999999
Q ss_pred cCCchhhhhhhhccCCC-cceeEEeccCCCcccCCCCCCCCCCCCCCceeeeecCCCceEEEEEEEEEe---cCCC-Cee
Q 044427 559 DATEVDYVNFLCKQGYN-TTIIRQITGDNSSVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTVTN---VGSP-NST 633 (734)
Q Consensus 559 ~~~~~d~~~~l~~~~~~-~~~~~~~~~~~~~~c~~~~~~~~~~ln~psi~~~~~~~~~~~~~~~~tv~N---~~~~-~~t 633 (734)
+....+++.|+|..+.. ...|.+-.. . | +. ...++++++-++.| ..+. ...
T Consensus 528 ~~~p~~~v~f~~~v~~~~~rgIylR~~--~--~-------------~~-------~~~~tv~V~p~f~~~~~~~~~~~i~ 583 (1354)
T 3lxu_X 528 RQSKDNMLRFSVRVGNNADKGIHLRQG--V--Q-------------RN-------SIDYNVYIEPIFYNDKEADPKDKFN 583 (1354)
T ss_dssp TTCGGGGEEEEEEETTTTBSSEEECSS--C--C-------------CS-------CEEEEEEEEEEESSCSCSSSTTCSC
T ss_pred CCCCccceEEEEEecCCCCCceEEecc--c--c-------------CC-------ceEEEEEEeeeecCcccCChhhccc
Confidence 99999999999998753 222211110 0 0 00 01112223333322 1111 112
Q ss_pred EEEEe--eCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEEc-----CceEEEeEEEEEecC
Q 044427 634 YTVRP--YMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWED-----GVHQVRSPVVIYNIL 702 (734)
Q Consensus 634 y~~~v--~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~~-----~~~~v~~P~~~~~~~ 702 (734)
|...+ .... -.|. .|+.|.+ .++.++|.|+|+++... .+.+++.|...| .....|+|+.|....
T Consensus 584 f~~~l~L~~t~-~wv~-~p~~l~l--~~~~r~~~v~vDp~~L~-~G~h~~~v~~~D~~~~~~gp~f~ipvTv~~P~ 654 (1354)
T 3lxu_X 584 FNVRLNLIASQ-PWVQ-CGAFLDL--SYGTRSIAVRVDPTGLQ-PGVHSAVIRAYDTDCVQKGSLFEIPVTVVQPH 654 (1354)
T ss_dssp CCCEEEEEESS-TTEE-ECSCEEC--TTSCEEEEEEECGGGCC-SEEEEEEEEEEESSCTTSCCSEEEEEEEEECB
T ss_pred eEEEEEEecCC-Ccee-cccceee--cCCCceEEEEECCCCCC-CcceeEEEEEEEcCCcccCceEEeeEEEEeee
Confidence 22222 1111 2333 3777777 57789999999999875 578999999875 357899999999865
|
| >2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=431.54 Aligned_cols=274 Identities=21% Similarity=0.169 Sum_probs=220.3
Q ss_pred ccccccCccCCCCCC--CCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC
Q 044427 81 FMGFSKGKLSSSQEG--SVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH 158 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~--GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~ 158 (734)
.++++..|.. .+|+ ||+||||||||| +||+|.+ +++..++|..+.. +.+..
T Consensus 29 ~i~~~~aw~~-~~G~~~gv~VaViDsGid-~Hp~l~~-----------------------~~~~~~~~~~~~~--~~~~~ 81 (347)
T 2iy9_A 29 AIGLTETTMS-LTDKNTPVVVSVVDSGVA-FIGGLSD-----------------------SEFAKFSFTQDGS--PFPVK 81 (347)
T ss_dssp HHTCCHHHHH-TSCTTSCCEEEEEESCCC-CCGGGTT-----------------------CEEEEEECBTTCC--SSCCS
T ss_pred hCChHHHHHH-hcCCCCCCEEEEEcCCCc-CChhhhc-----------------------CcccCCcccCCCC--CCCCC
Confidence 3566667755 8999 999999999999 9999963 2455566664421 11122
Q ss_pred CCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhC------CCcEE
Q 044427 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIAD------GVDII 232 (734)
Q Consensus 159 ~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~------g~dVI 232 (734)
.+.|..||||||||||+|+. | +.||||+|+|+.+|+++..+.. ++++||+||+++ +++||
T Consensus 82 ~~~d~~gHGT~vAgiia~~~-------g-----~~GvAp~a~l~~~~v~~~~~~~--~~~~ai~~a~~~~~~~~~~~~Vi 147 (347)
T 2iy9_A 82 KSEALYIHGTAMASLIASRY-------G-----IYGVYPHALISSRRVIPDGVQD--SWIRAIESIMSNVFLAPGEEKII 147 (347)
T ss_dssp SSHHHHHHHHHHHHHHHCSS-------S-----SCCSSTTCEEEEEECCSSBCTT--HHHHHHHHHHTCTTSCTTEEEEE
T ss_pred CCCCCCCcHHHHHHHHhccc-------C-----CcccCCCCEEEEEEEecCCCHH--HHHHHHHHHHhhhhcccCCceEE
Confidence 45678899999999999971 2 2899999999999998775543 899999999999 99999
Q ss_pred EEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-------CCcCCCCC----------ceEEeccccc--C
Q 044427 233 SVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-------YSVSNFAP----------WTLTVAASSI--D 293 (734)
Q Consensus 233 NlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-------~~~~~~ap----------~vitVga~~~--~ 293 (734)
|||||... .......+..++.++.++|++||+||||+|... ..++...+ ++|+|||++. +
T Consensus 148 n~S~G~~~-~~~~~~~~~~ai~~a~~~gilvV~AAGN~g~~~~~~~~~~~~~Pa~~~~~~~~~~~~~~vi~Vga~~~~~~ 226 (347)
T 2iy9_A 148 NISGGQKG-VASASVWTELLSRMGRNNDRLIVAAVGNDGADIRKLSAQQRIWPAAYHPVSSVNKKQDPVIRVAALAQYRK 226 (347)
T ss_dssp EESSCBCC-C-CCHHHHHHHHHHHHHTSCEEEEECCBSCCBTTTSCTTTSCBTTTCCCCSHHHHHTCCEEEEEEECCCCT
T ss_pred EeccccCC-CCCcCHHHHHHHHHHHhCCeEEEEeCCCCCCCCCCcccccccCCCcCccccccccccCCEEEEEEcccCCC
Confidence 99999773 233556778888899999999999999999753 34555567 8899988654 1
Q ss_pred ceeEEEEEeCCCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhh
Q 044427 294 RKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDIL 373 (734)
Q Consensus 294 ~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~ 373 (734)
... .
T Consensus 227 g~~-------------------------------------------------~--------------------------- 230 (347)
T 2iy9_A 227 GET-------------------------------------------------P--------------------------- 230 (347)
T ss_dssp TSC-------------------------------------------------C---------------------------
T ss_pred Cce-------------------------------------------------e---------------------------
Confidence 000 0
Q ss_pred ccCceEEEEecCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCC
Q 044427 374 AVNGLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDIL 453 (734)
Q Consensus 374 ~~Ga~g~i~~n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~ 453 (734)
...+.++.||++||+
T Consensus 231 ----------------------------------------------------------~~~~~~~~fS~~G~~------- 245 (347)
T 2iy9_A 231 ----------------------------------------------------------VLHGGGITGSRFGNN------- 245 (347)
T ss_dssp ----------------------------------------------------------CBCCCSSSCBCBCTT-------
T ss_pred ----------------------------------------------------------cccCCCCCCCCCCCC-------
Confidence 001245799999995
Q ss_pred CCcEEecCCCEeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCC
Q 044427 454 KPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRK 533 (734)
Q Consensus 454 KPDI~APG~~I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~ 533 (734)
||||+|||++|+++++. +.|..++|||||||||||++|||+|++|+|++.+||++|++||+++...+
T Consensus 246 ~~di~APG~~i~s~~~~-------------~~~~~~sGTS~AaP~VaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~~ 312 (347)
T 2iy9_A 246 WVDIAAPGQNITFLRPD-------------AKTGTGSGTSEATAIVSGVLAAMTSCNPRATATELKRTLLESADKYPSLV 312 (347)
T ss_dssp TCSEEEECSSEEEECTT-------------SCEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSEECGGGT
T ss_pred CCEEEeCCCCeEeecCC-------------CCeEeccchHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCCCC
Confidence 68999999999999986 77999999999999999999999999999999999999999999987653
Q ss_pred cccCCCCCCCCccCccccCCC
Q 044427 534 QEDLEFAYGSGHINPAQAIDP 554 (734)
Q Consensus 534 ~~~~~~~~G~G~vn~~~Al~~ 554 (734)
+..+|+|+||+.+|++.
T Consensus 313 ----~~~~G~G~ld~~~A~~~ 329 (347)
T 2iy9_A 313 ----DKVTEGRVLNAEKAISM 329 (347)
T ss_dssp ----TTSGGGEECCHHHHHHH
T ss_pred ----CccccCCEecHHHHHHH
Confidence 46899999999999984
|
| >1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-48 Score=436.53 Aligned_cols=297 Identities=24% Similarity=0.293 Sum_probs=229.8
Q ss_pred ccccccccCcc-CCCCCCCCEEEEEccCCCC------CCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCc
Q 044427 79 WDFMGFSKGKL-SSSQEGSVIIGLLDTGIWP------ESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI 151 (734)
Q Consensus 79 ~~~~g~~~~~~-~~~~G~GV~VgVIDtGid~------~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~ 151 (734)
.+.++++..|. .+++|+||+|||||||||+ +||+|.+ ++...++|.+.
T Consensus 5 ~~~i~~~~~~~~~g~~G~gv~VaViDtGvd~~~~~~~~hp~l~~-----------------------~i~~~~~~~~~-- 59 (434)
T 1wmd_A 5 RGIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHEAFRG-----------------------KITALYALGRT-- 59 (434)
T ss_dssp HHHTTHHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCTTTTT-----------------------CEEEEEETTTT--
T ss_pred hhhhCchhhhhccCCCCcccEEEEEecCcCCCCCCcccCcccCC-----------------------CEeeeccccCC--
Confidence 34567777884 7999999999999999999 7999963 24555566543
Q ss_pred cccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCC---CHHHHHHHHHHHHhCC
Q 044427 152 YEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGC---ATADILAAFDDAIADG 228 (734)
Q Consensus 152 ~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~---~~~~i~~ai~~ai~~g 228 (734)
..+.|..||||||||||+|+.. + +.||||+|+|+.+|+++..+. ...++.++|++|+++|
T Consensus 60 ------~~~~d~~gHGT~VAgiiag~g~------~-----~~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~ai~~a~~~g 122 (434)
T 1wmd_A 60 ------NNANDTNGHGTHVAGSVLGNGS------T-----NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAG 122 (434)
T ss_dssp ------TCCCCSSSHHHHHHHHHHCCSS------S-----SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTT
T ss_pred ------CCCCCCCCcHHHHHHHHHcCCC------C-----ceeeCCCCEEEEEEeecCCCccccccHHHHHHHHHHHhcC
Confidence 3567889999999999998642 1 389999999999999987663 4567899999999999
Q ss_pred CcEEEEccCCCCCCCCCCCHHHHHHHHH-HhCCcEEEEcCCCCCCCCC--CcCCCCCceEEecccccCceeEEEEEeCCC
Q 044427 229 VDIISVSLGSDFPFEYFEDPIAIGSFHA-MKYGILTSNSAGNSGPDPY--SVSNFAPWTLTVAASSIDRKFVAQAVLGNG 305 (734)
Q Consensus 229 ~dVINlSlG~~~~~~~~~~~~~~a~~~a-~~~Gi~vV~AAGN~G~~~~--~~~~~ap~vitVga~~~~~~~~~~~~~~~g 305 (734)
++|||||||..... ..+....++.++ .++|++||+||||+|.... ..+..++++|+|||++..+...
T Consensus 123 ~~Vin~S~G~~~~~--~~~~~~~~id~~~~~~gvlvV~AAGN~g~~~~~~~~Pa~~~~vitVga~~~~~~~~-------- 192 (434)
T 1wmd_A 123 ARIHTNSWGAAVNG--AYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPSF-------- 192 (434)
T ss_dssp CSEEEECCCBCCTT--CCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGGG--------
T ss_pred CeEEEecCCCCcCC--cCCHHHHHHHHHHhCCCeEEEEECCCCCCCCcccCCcccCCccEEEecccccCccc--------
Confidence 99999999987311 224455566555 5899999999999998654 3455679999999976432000
Q ss_pred eEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecC
Q 044427 306 ITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADS 385 (734)
Q Consensus 306 ~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~ 385 (734)
+. .
T Consensus 193 -----------------------~~---------------~--------------------------------------- 195 (434)
T 1wmd_A 193 -----------------------GS---------------Y--------------------------------------- 195 (434)
T ss_dssp -----------------------CG---------------G---------------------------------------
T ss_pred -----------------------Cc---------------c---------------------------------------
Confidence 00 0
Q ss_pred CccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEe
Q 044427 386 VFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDIL 465 (734)
Q Consensus 386 ~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~ 465 (734)
....+.++.||++||+. ++++||||+|||++|+
T Consensus 196 ---------------------------------------------~~~~~~~a~fS~~G~~~--~g~~kpdi~ApG~~i~ 228 (434)
T 1wmd_A 196 ---------------------------------------------ADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFIL 228 (434)
T ss_dssp ---------------------------------------------GSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEE
T ss_pred ---------------------------------------------cCCCCccccccCCCCCC--CCCCCceEEcCCCCeE
Confidence 01134789999999998 8999999999999999
Q ss_pred eccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCC-----CHHHHHHHHHhccccccCCCcccCCCC
Q 044427 466 ASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNW-----SPSSIKSALMTTAYVMDSRKQEDLEFA 540 (734)
Q Consensus 466 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~l-----s~~~vk~~L~~TA~~~~~~~~~~~~~~ 540 (734)
++++........ .....+.|..++|||||||||||++|||+|++|++ ++++||++|++||+++...+ .+..
T Consensus 229 s~~~~~~~~~~~-~~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~~~~~s~~~vk~~L~~tA~~~~~~~---~~~~ 304 (434)
T 1wmd_A 229 SARSSLAPDSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGY---PNGN 304 (434)
T ss_dssp EECCTTCCGGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCS---SCTT
T ss_pred ecCCCCCCCccc-ccCCCCceEeecchhHHHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHcCCcccCCCC---CCcc
Confidence 998642110000 00013679999999999999999999999998865 89999999999999864322 3789
Q ss_pred CCCCccCccccCCCc
Q 044427 541 YGSGHINPAQAIDPG 555 (734)
Q Consensus 541 ~G~G~vn~~~Al~~~ 555 (734)
||||+||+.+|++..
T Consensus 305 ~G~G~vd~~~a~~~~ 319 (434)
T 1wmd_A 305 QGWGRVTLDKSLNVA 319 (434)
T ss_dssp TTTCBCCHHHHHTCE
T ss_pred CCcCeEeHHHhcccc
Confidence 999999999999754
|
| >3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-49 Score=425.05 Aligned_cols=299 Identities=25% Similarity=0.293 Sum_probs=222.1
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCccccccc-CCcccCce----eEeeeecCCCC-ccccC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG-ANFTCNNK----IIGARYYNSEN-IYEVT 155 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~-~~f~~n~k----i~g~~~~~~~~-~~~~~ 155 (734)
++++..|..+++|+||+||||||||| +||+|.+.-.. .|+-.... .....+.+ .-...++.... ...+.
T Consensus 19 i~~~~aw~~g~~G~gV~VaViDtGi~-~hp~l~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (340)
T 3lpc_A 19 VKADKVWDMGFTGQNVVVAVVDTGIL-HHRDLNANVLP----GYDFISNSQISLDGDGRDADPFDEGDWFDNWACGGRPD 93 (340)
T ss_dssp CCHHHHHHHTCSCTTCEEEEEESCBC-CCTTTGGGBCC----CEECCCCHHHHCSSSSSBSCCBCCCCCBCTTTTSCTTC
T ss_pred CCHHHHHHhcCCCCCeEEEEEcCCCC-CChhhhccccc----CccccCCccccccCCCccCCccccccccccccccCCCC
Confidence 55666888999999999999999998 99999743211 11110000 00000000 00000000000 00112
Q ss_pred CCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh---------
Q 044427 156 DFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA--------- 226 (734)
Q Consensus 156 ~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~--------- 226 (734)
+.....|..||||||||||+|...++. | +.||||+|+|+.+|+++..+.+..+++++|+||++
T Consensus 94 ~~~~~~d~~gHGT~vAgiia~~~~~~~---g-----~~GvAp~a~l~~~~v~~~~~~~~~~~~~ai~~a~~~~~~~~~~~ 165 (340)
T 3lpc_A 94 PRKERSDSSWHGSHVAGTIAAVTNNRI---G-----VAGVAYGAKVVPVRALGRCGGYDSDISDGLYWAAGGRIAGIPEN 165 (340)
T ss_dssp GGGSCBCCCCHHHHHHHHHHCCCSSSS---S-----CCCTTTTSEEEEEECCBTTBCCHHHHHHHHHHHHTCCCTTSCCC
T ss_pred cccCCCCCCCCHHHHHHHHHccCCCCC---c-----ceeecCCCEEEEEEEecCCCCcHHHHHHHHHHHhcccccccccc
Confidence 223457889999999999999864421 2 38999999999999998887889999999999998
Q ss_pred -CCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCC
Q 044427 227 -DGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGN 304 (734)
Q Consensus 227 -~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~ 304 (734)
.+++|||||||... .....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 166 ~~~~~Vin~S~G~~~---~~~~~~~~~~~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~----------- 231 (340)
T 3lpc_A 166 RNPAKVINMSLGSDG---QCSYNAQTMIDRATRLGALVVVAAGNENQNASNTWPTSCNNVLSVGATTSR----------- 231 (340)
T ss_dssp SSCCSEEEECCCEES---CCCHHHHHHHHHHHHHTCEEEEECCSSSSBGGGEETTTSSSCEEEEEECTT-----------
T ss_pred cCCCeEEEeCcCCCC---CcchhHHHHHHHHHhCCcEEEEeCCCCCCCCCCcCCccCCceEEEecCCCC-----------
Confidence 89999999999762 33456777888899999999999999987643 345667889999885422
Q ss_pred CeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEec
Q 044427 305 GITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMAD 384 (734)
Q Consensus 305 g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n 384 (734)
T Consensus 232 -------------------------------------------------------------------------------- 231 (340)
T 3lpc_A 232 -------------------------------------------------------------------------------- 231 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCE
Q 044427 385 SVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDI 464 (734)
Q Consensus 385 ~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I 464 (734)
+.++.||++|| ||||+|||.+|
T Consensus 232 --------------------------------------------------~~~~~~S~~g~--------~~di~ApG~~i 253 (340)
T 3lpc_A 232 --------------------------------------------------GIRASFSNYGV--------DVDLAAPGQDI 253 (340)
T ss_dssp --------------------------------------------------SSBCTTCCBST--------TCCEEEECSSE
T ss_pred --------------------------------------------------CCcCCCCCCCC--------CceEEecCCCe
Confidence 36788999997 46999999999
Q ss_pred eeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhh-C---CCCCHHHHHHHHHhccccccCCCcccCCCC
Q 044427 465 LASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAA-H---PNWSPSSIKSALMTTAYVMDSRKQEDLEFA 540 (734)
Q Consensus 465 ~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~-~---P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~ 540 (734)
+++++.... ......|..++|||||||+|||++|||+|+ + |.|++++||++|++||+++... .+..
T Consensus 254 ~s~~~~~~~------~~~~~~~~~~sGTS~AaP~vaG~aAll~~~~~~~~p~lt~~~v~~~L~~tA~~~~~~----~~~~ 323 (340)
T 3lpc_A 254 LSTVDSGTR------RPVSDAYSFMAGTSMATPHVSGVAALVISAANSVNKNLTPAELKDVLVSTTSPFNGR----LDRA 323 (340)
T ss_dssp EEEEESCSS------SCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHTCBCCSSC----CSSC
T ss_pred ecccCCCCc------CCCCCcceecccHhHHHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHhcCCcCCCC----CCCC
Confidence 999875321 111256999999999999999999999998 5 9999999999999999987532 2679
Q ss_pred CCCCccCccccCCCc
Q 044427 541 YGSGHINPAQAIDPG 555 (734)
Q Consensus 541 ~G~G~vn~~~Al~~~ 555 (734)
+|||+||+.+||+..
T Consensus 324 ~G~G~vd~~~Av~~~ 338 (340)
T 3lpc_A 324 LGSGIVDAEAAVNSV 338 (340)
T ss_dssp CCSSBCCHHHHHHHH
T ss_pred cccceecHHHHHHHH
Confidence 999999999998753
|
| >1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-47 Score=399.10 Aligned_cols=238 Identities=24% Similarity=0.354 Sum_probs=203.1
Q ss_pred cccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCC
Q 044427 84 FSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDS 163 (734)
Q Consensus 84 ~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~ 163 (734)
+...|..+++|+||+|+|||||||++||+|.+. +...++|.+.. ..+.|.
T Consensus 18 ~~~aw~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~~-------~~~~d~ 67 (284)
T 1sh7_A 18 LDRNYNANFDGFGVTAYVIDTGVNNNHEEFGGR-----------------------SVSGYDFVDND-------ADSSDC 67 (284)
T ss_dssp CCSBCCCSCCCTTCEEEEEESCCCTTCTTTTTC-----------------------EEEEEETTTTB-------SCCCCS
T ss_pred chhhhhcCCCCCCCEEEEEcCCCCCCChhHcCC-----------------------ccccccccCCC-------CCCCCC
Confidence 344677799999999999999999999999632 44556666542 346788
Q ss_pred CCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC--CCcEEEEccCCCC
Q 044427 164 EGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD--GVDIISVSLGSDF 240 (734)
Q Consensus 164 ~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~--g~dVINlSlG~~~ 240 (734)
.||||||||||+|+. .||||+|+|+.+|+++..+ .+.+++++||+|++++ +++|||||||..
T Consensus 68 ~gHGT~vAgiia~~~--------------~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~- 132 (284)
T 1sh7_A 68 NGHGTHVAGTIGGSQ--------------YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGG- 132 (284)
T ss_dssp SSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBS-
T ss_pred CCcHHHHHHHHhccc--------------CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCC-
Confidence 999999999999873 6999999999999998766 6788999999999984 799999999987
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLN 319 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (734)
....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 133 ----~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~-------------------------- 182 (284)
T 1sh7_A 133 ----QSTALDSAVQGAIQSGVSFMLAAGNSNADACNTSPARVPSGVTVGSTTSS-------------------------- 182 (284)
T ss_dssp ----CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGSBTTTCTTSEEEEEECTT--------------------------
T ss_pred ----CCHHHHHHHHHHHHCCCEEEEECCcCCCCCCccccccCCCeEEEEEecCC--------------------------
Confidence 2357788888899999999999999997542 445667899999885422
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceE
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 399 (734)
T Consensus 183 -------------------------------------------------------------------------------- 182 (284)
T 1sh7_A 183 -------------------------------------------------------------------------------- 182 (284)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCC
Q 044427 400 LISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479 (734)
Q Consensus 400 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 479 (734)
+.++.||++||.. ||+|||++|+++++.
T Consensus 183 -----------------------------------~~~~~~S~~G~~~--------di~ApG~~i~s~~~~--------- 210 (284)
T 1sh7_A 183 -----------------------------------DSRSSFSNWGSCV--------DLFAPGSQIKSAWYD--------- 210 (284)
T ss_dssp -----------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTT---------
T ss_pred -----------------------------------CCcCcccCCCCcc--------EEEeccCCeEEecCC---------
Confidence 3678899999965 999999999999876
Q ss_pred CCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 480 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
+.|..++|||||||||||++|||+|++|+|++++||++|++||++....
T Consensus 211 ----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 259 (284)
T 1sh7_A 211 ----GGYKTISGTSMATPHVAGVAALYLQENNGLTPLQLTGLLNSRASENKVS 259 (284)
T ss_dssp ----SSEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred ----CCEEEccChHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCcc
Confidence 6899999999999999999999999999999999999999999886543
|
| >2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=392.14 Aligned_cols=238 Identities=26% Similarity=0.350 Sum_probs=201.1
Q ss_pred ccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCC
Q 044427 85 SKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSE 164 (734)
Q Consensus 85 ~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~ 164 (734)
...|..+++|+||+|+|||||||++||+|.+. +..+++|.++. ..+.|..
T Consensus 21 ~~~~~~~~~G~gv~VaViDtGid~~Hpdl~~~-----------------------~~~~~d~~~~~-------~~~~d~~ 70 (278)
T 2b6n_A 21 DNNYHTDYDGSGVTAFVIDTGVLNTHNEFGGR-----------------------ASSGYDFIDND-------YDATDCN 70 (278)
T ss_dssp CSEEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTTTB-------SCCCCSS
T ss_pred chhcccCCCCCCCEEEEEeCCCCCCChhHhcc-----------------------cccCeecCCCC-------CCCCCCC
Confidence 34677899999999999999999999999632 44556666542 3467889
Q ss_pred CChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHh--CCCcEEEEccCCCCC
Q 044427 165 GHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIA--DGVDIISVSLGSDFP 241 (734)
Q Consensus 165 gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~--~g~dVINlSlG~~~~ 241 (734)
||||||||||+|.. .||||+|+|+.+|++++.+ ++.+++++||+|+++ .+++|||||||...
T Consensus 71 gHGT~vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~- 135 (278)
T 2b6n_A 71 GHGTHVAGTIGGST--------------YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA- 135 (278)
T ss_dssp SHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC-
T ss_pred CcHHHHHHHHHCCC--------------cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc-
Confidence 99999999999863 6999999999999998766 678899999999998 59999999999872
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCC
Q 044427 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNG 320 (734)
Q Consensus 242 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (734)
...+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 136 ----~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 184 (278)
T 2b6n_A 136 ----SQATDDAVNAAVAAGITFVVAAGNDNSNACNYSPARAADAITVGSTTSN--------------------------- 184 (278)
T ss_dssp ----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------------------
T ss_pred ----CHHHHHHHHHHHHCCCEEEEEeCCCCCCCCCcCcccCCCeEEEEeeCCC---------------------------
Confidence 356778888899999999999999997643 245567889999885422
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEE
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATL 400 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 400 (734)
T Consensus 185 -------------------------------------------------------------------------------- 184 (278)
T 2b6n_A 185 -------------------------------------------------------------------------------- 184 (278)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 401 ISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 401 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.||++||. |||+|||++|++++...
T Consensus 185 ----------------------------------~~~~~~S~~G~~--------~di~ApG~~i~s~~~~~--------- 213 (278)
T 2b6n_A 185 ----------------------------------DSRSSFSNYGTC--------LDIYAPGSSITSSWYTS--------- 213 (278)
T ss_dssp ----------------------------------SBBCTTCCBSTT--------CCEEEECSSEEEECTTS---------
T ss_pred ----------------------------------CCcCCcCCCCCC--------CeEEeCCCCeECcccCC---------
Confidence 357889999985 49999999999998652
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccC
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDS 531 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~ 531 (734)
.+.|..++|||||||||||++|||+|++|+|++.+||++|++||++...
T Consensus 214 --~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~ 262 (278)
T 2b6n_A 214 --NSATNTISGTSMASPHVAGVAALYLDENPNLSPAQVTNLLKTRATADKV 262 (278)
T ss_dssp --TTCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCC
T ss_pred --CCCEEEeCcHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCccCCc
Confidence 2679999999999999999999999999999999999999999987543
|
| >4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=389.90 Aligned_cols=240 Identities=24% Similarity=0.337 Sum_probs=203.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+.+...|..+.+|+||+|+|||||||++||+|.+. +...++|.. ..+.
T Consensus 18 ~~~~~a~~~~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~---------~~~~ 65 (276)
T 4dzt_A 18 LPLSNSYTYTATGRGVNVYVIDTGIRTTHREFGGR-----------------------ARVGYDALG---------GNGQ 65 (276)
T ss_dssp SSCCSCEECSCCCTTCEEEEEESCCCTTCGGGTTC-----------------------EEEEEETTS---------SCSC
T ss_pred CCcccceecCCCCCCcEEEEEccCCCCCChhHccC-----------------------eeccccCCC---------CCCC
Confidence 34445777799999999999999999999999632 444455544 2456
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC--CCcEEEEccCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD--GVDIISVSLGS 238 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~--g~dVINlSlG~ 238 (734)
|..||||||||||+|.. .||||+|+|+.+|++++.+ .+..+++++|+|+++. +++|||||||.
T Consensus 66 d~~gHGT~vAgiiag~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~ 131 (276)
T 4dzt_A 66 DCNGHGTHVAGTIGGVT--------------YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGG 131 (276)
T ss_dssp CSSSHHHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCE
T ss_pred CCCCCHHHHHHHHHccc--------------cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCC
Confidence 78899999999999873 7999999999999998776 7888999999999997 89999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC-cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCC
Q 044427 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS-VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFD 317 (734)
Q Consensus 239 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~ 317 (734)
.. ...+..++.++.++|+++|+||||+|..... .+...+++|+|||.+.+
T Consensus 132 ~~-----~~~~~~a~~~a~~~gvlvv~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~------------------------ 182 (276)
T 4dzt_A 132 GV-----STALDNAVKNSIAAGVVYAVAAGNDNANACNYSPARVAEALTVGATTSS------------------------ 182 (276)
T ss_dssp EC-----CHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT------------------------
T ss_pred CC-----CHHHHHHHHHHHhCCCEEEEECCCCCCCCCCcCcccCCCEEEEEEECCC------------------------
Confidence 62 4677888889999999999999999976543 25567888999875422
Q ss_pred CCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcc
Q 044427 318 LNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLP 397 (734)
Q Consensus 318 ~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p 397 (734)
T Consensus 183 -------------------------------------------------------------------------------- 182 (276)
T 4dzt_A 183 -------------------------------------------------------------------------------- 182 (276)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCC
Q 044427 398 ATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLD 477 (734)
Q Consensus 398 ~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~ 477 (734)
+.++.||++||.. ||+|||++|++++...
T Consensus 183 -------------------------------------~~~~~~S~~g~~~--------dv~ApG~~i~s~~~~~------ 211 (276)
T 4dzt_A 183 -------------------------------------DARASFSNYGSCV--------DLFAPGASIPSAWYTS------ 211 (276)
T ss_dssp -------------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECTTS------
T ss_pred -------------------------------------CCcCCcCCCCCCc--------eEEeCCCCeEccccCC------
Confidence 3678899999976 9999999999998763
Q ss_pred CCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 478 PEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 478 ~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
...|..++|||||||+|||++|||+|++|+|++++||++|++||++....
T Consensus 212 -----~~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~v~~~L~~tA~~~~~~ 261 (276)
T 4dzt_A 212 -----DTATQTLNGTSMATPHVAGVAALYLEQNPSATPASVASAILNGATTGRLS 261 (276)
T ss_dssp -----SSCEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHSEESCCB
T ss_pred -----CCceEEeeEHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcCCccC
Confidence 25799999999999999999999999999999999999999999987654
|
| >2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=391.26 Aligned_cols=238 Identities=29% Similarity=0.362 Sum_probs=202.6
Q ss_pred CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHH
Q 044427 90 SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTH 169 (734)
Q Consensus 90 ~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGTh 169 (734)
...+|+||+|+|||||||++||+|.+. +...++|.+ .+.|..|||||
T Consensus 26 ~~~~G~gv~VaViDsGvd~~H~~l~~~-----------------------~~~~~~~~~----------~~~d~~gHGT~ 72 (279)
T 2pwa_A 26 DESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYYY----------SSRDGNGHGTH 72 (279)
T ss_dssp CTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESSS----------CSSCSSSHHHH
T ss_pred cCCCCCCCEEEEEeCCCCCCChhHhCc-----------------------cccccCCCC----------CCCCCCCCHHH
Confidence 357999999999999999999999632 444555551 35678999999
Q ss_pred HHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCC-------cEEEEccCCCCC
Q 044427 170 TSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGV-------DIISVSLGSDFP 241 (734)
Q Consensus 170 VAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~-------dVINlSlG~~~~ 241 (734)
|||||+|+. .||||+|+|+.+|+++..+ ++.+++++||+|++++++ +|||||||..
T Consensus 73 vAgiia~~~--------------~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~-- 136 (279)
T 2pwa_A 73 CAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG-- 136 (279)
T ss_dssp HHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--
T ss_pred HHHHHHhcc--------------cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCC--
Confidence 999999863 7999999999999998876 788999999999999887 9999999976
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCC
Q 044427 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNG 320 (734)
Q Consensus 242 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~ 320 (734)
....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+
T Consensus 137 ---~~~~~~~ai~~a~~~gi~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~--------------------------- 186 (279)
T 2pwa_A 137 ---YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY--------------------------- 186 (279)
T ss_dssp ---CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT---------------------------
T ss_pred ---CCHHHHHHHHHHHHCCCEEEEECCCCCCcCCCcCcccCCcEEEEEEecCC---------------------------
Confidence 2467788888899999999999999997643 345667899999885422
Q ss_pred ceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEE
Q 044427 321 ISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATL 400 (734)
Q Consensus 321 ~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~ 400 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T 2pwa_A 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCC
Q 044427 401 ISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPED 480 (734)
Q Consensus 401 i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~ 480 (734)
+.++.||++||.+ ||+|||++|+++++.
T Consensus 187 ----------------------------------~~~~~~S~~G~~~--------di~APG~~i~s~~~~---------- 214 (279)
T 2pwa_A 187 ----------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIG---------- 214 (279)
T ss_dssp ----------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETT----------
T ss_pred ----------------------------------CCcCCcCCCCCcc--------eEEEecCCeEEeecC----------
Confidence 3678899999964 999999999999886
Q ss_pred CCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCcc
Q 044427 481 TRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPA 549 (734)
Q Consensus 481 ~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~ 549 (734)
+.|..++|||||||||||++|||+|+ |.+++.+||++|++||++... ..+|+|.+|+.
T Consensus 215 ---~~~~~~sGTS~AaP~VaG~aAll~~~-p~lt~~~v~~~L~~tA~~~~~-------~~~~~g~~n~l 272 (279)
T 2pwa_A 215 ---GSTRSISGTSMATPHVAGLAAYLMTL-GKTTAASACRYIADTANKGDL-------SNIPFGTVNLL 272 (279)
T ss_dssp ---TEEEEECSHHHHHHHHHHHHHHHHHT-TSCCTTTHHHHHHHHSEESCC-------BSCCTTSCCEE
T ss_pred ---CCEEEcCChHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhCccccc-------CCCCCCCccEe
Confidence 67999999999999999999999999 999999999999999988643 24678888864
|
| >1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-45 Score=414.49 Aligned_cols=287 Identities=16% Similarity=0.134 Sum_probs=215.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++++.+|..+++|+||+|||||||||++||+|.+.-. ....++|.++.. .+.+...+.
T Consensus 25 i~~~~aw~~g~~G~gv~VaViDtGvd~~Hpdl~~~~~---------------------~~~~~d~~~~~~-~p~~~~~~~ 82 (471)
T 1p8j_A 25 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNYD---------------------PGASFDVNDQDP-DPQPRYTQM 82 (471)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGBC---------------------GGGCEETTTTBS-CCCCCCCTT
T ss_pred CChHHHHhcCCCCCCCEEEEEeCCcCCCChhHhhccC---------------------ccCcccccCCCC-CCCCccCCC
Confidence 5666688889999999999999999999999974310 001334544321 111122456
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDF 240 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~ 240 (734)
|..+|||||||||||...++. | +.||||+|+|+.+|+++ +...++++||+++++ ++++|||||||...
T Consensus 83 d~~gHGT~vAGiiaa~~~n~~---g-----~~GvAp~a~i~~~rv~~---g~~~~~~~ai~~a~~~~~~~Vin~S~G~~~ 151 (471)
T 1p8j_A 83 NDNRHGTRCAGEVAAVANNGV---C-----GVGVAYNARIGGVRMLD---GEVTDAVEARSLGLNPNHIHIYSASWGPED 151 (471)
T ss_dssp CTTCHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECSS---SCCCHHHHHHHHTSCTTTCCEEEECCBSCC
T ss_pred CCCCcHHHHHHHHHeeccCCC---C-----CEEECCCCeEEEEEccC---CchhHHHHHHHhhhccCCCeEEEeccCcCC
Confidence 889999999999999754321 1 38999999999999985 346789999999999 99999999999863
Q ss_pred CCCC---CCCHHHHHHHHHH-----hCCcEEEEcCCCCCCCCCC----cCCCCCceEEecccccCceeEEEEEeCCCeEe
Q 044427 241 PFEY---FEDPIAIGSFHAM-----KYGILTSNSAGNSGPDPYS----VSNFAPWTLTVAASSIDRKFVAQAVLGNGITY 308 (734)
Q Consensus 241 ~~~~---~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~~----~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~ 308 (734)
.... ....+..++.++. .+|++||+||||+|..... ....++++|+|||++.+
T Consensus 152 ~~~~~~~~~~~~~~a~~~a~~~~~~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vItVgA~~~~--------------- 216 (471)
T 1p8j_A 152 DGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQF--------------- 216 (471)
T ss_dssp SSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECTT---------------
T ss_pred CCCcccCcHHHHHHHHHHHHHhhccCCCeEEEEeCCCCCCCCCCcCcCcccCCCceEEEecccCC---------------
Confidence 2111 1233445555554 3699999999999975322 12235788999885422
Q ss_pred eeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCcc
Q 044427 309 PGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFT 388 (734)
Q Consensus 309 ~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~ 388 (734)
T Consensus 217 -------------------------------------------------------------------------------- 216 (471)
T 1p8j_A 217 -------------------------------------------------------------------------------- 216 (471)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeecc
Q 044427 389 DLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASW 468 (734)
Q Consensus 389 ~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~ 468 (734)
+.++.||++||.. ....+|...+||.+|+++.
T Consensus 217 ----------------------------------------------g~~a~~S~~g~~~--~~~~~~~~~~~g~~i~st~ 248 (471)
T 1p8j_A 217 ----------------------------------------------GNVPWYSEACSST--LATTYSSGNQNEKQIVTTD 248 (471)
T ss_dssp ----------------------------------------------SCCCTTCCBCTTC--CEEEECCCSTTSCCEEEEE
T ss_pred ----------------------------------------------CCcccccCCCCcc--eEEeCCCCCCCCCCEEEee
Confidence 3678899999986 4444555556677999987
Q ss_pred CCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc--------cCCCC
Q 044427 469 SPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE--------DLEFA 540 (734)
Q Consensus 469 ~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~--------~~~~~ 540 (734)
.. ...|..++|||||||||||++|||+|++|+|++++||++|++||++++..... ..+..
T Consensus 249 ~~------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~n~~g~~~~~~ 316 (471)
T 1p8j_A 249 LR------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHS 316 (471)
T ss_dssp TT------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTSCEEBTT
T ss_pred CC------------CCccccCCCcccccchhhhHHHHHHhhCCCCCHHHHHHHHHhcCccCCCCCCCceecCCCcccCCC
Confidence 64 26799999999999999999999999999999999999999999987653210 12578
Q ss_pred CCCCccCccccCCCce
Q 044427 541 YGSGHINPAQAIDPGL 556 (734)
Q Consensus 541 ~G~G~vn~~~Al~~~l 556 (734)
||||+||+.+|++...
T Consensus 317 ~G~G~vda~~Av~~a~ 332 (471)
T 1p8j_A 317 YGYGLLDAGAMVALAQ 332 (471)
T ss_dssp TBTCBCCHHHHHHHHH
T ss_pred CCCEEEcHhHHHHHhh
Confidence 9999999999998543
|
| >3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=381.22 Aligned_cols=227 Identities=27% Similarity=0.368 Sum_probs=193.9
Q ss_pred CCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChHHH
Q 044427 91 SSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHT 170 (734)
Q Consensus 91 ~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGThV 170 (734)
..+|+||+|+|||||||++||+|.+. +...++|..+ ..|..||||||
T Consensus 28 ~~~G~gv~VaViDtGvd~~h~~l~~~-----------------------~~~~~~~~~~----------~~d~~gHGT~v 74 (279)
T 3f7m_A 28 TSAGAGACVYVIDTGVEDTHPDFEGR-----------------------AKQIKSYAST----------ARDGHGHGTHC 74 (279)
T ss_dssp TTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEECSSS----------SSCSSSHHHHH
T ss_pred CCCCCCCEEEEEcCCCCCCChhhccc-----------------------cccccCCCCC----------CCCCCCcHHHH
Confidence 34999999999999999999999632 4445555433 23788999999
Q ss_pred HHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCC-------CcEEEEccCCCCCC
Q 044427 171 SSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADG-------VDIISVSLGSDFPF 242 (734)
Q Consensus 171 AGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g-------~dVINlSlG~~~~~ 242 (734)
||||+|+. .||||+|+|+.+|+++..+ ++..+++++|+|+++++ ++|||||||..
T Consensus 75 Agii~~~~--------------~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--- 137 (279)
T 3f7m_A 75 AGTIGSKT--------------WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--- 137 (279)
T ss_dssp HHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE---
T ss_pred HHHHhcCc--------------cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC---
Confidence 99999863 7999999999999998766 78889999999999976 89999999976
Q ss_pred CCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC-cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCCCc
Q 044427 243 EYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS-VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGI 321 (734)
Q Consensus 243 ~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~ 321 (734)
....+..++.++.++|++||+||||+|..... .+...+++|+|||++.+
T Consensus 138 --~~~~~~~a~~~a~~~gv~vV~AAGN~g~~~~~~~Pa~~~~vi~Vga~~~~---------------------------- 187 (279)
T 3f7m_A 138 --YSAALNQAAARLQSSGVFVAVAAGNDNRDAANTSPASEPTVCTVGATDSN---------------------------- 187 (279)
T ss_dssp --CCHHHHHHHHHHHHTTCEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT----------------------------
T ss_pred --ccHHHHHHHHHHHHCCCEEEEEcCCCCCCCCCcCCCCCCCEEEEeecCCC----------------------------
Confidence 44678888889999999999999999876443 35567889999885422
Q ss_pred eeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceEEe
Q 044427 322 SYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPATLI 401 (734)
Q Consensus 322 ~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~~i 401 (734)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T 3f7m_A 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCCCC
Q 044427 402 SKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDT 481 (734)
Q Consensus 402 ~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~~~ 481 (734)
+.++.||++||.. ||+|||++|+++++.
T Consensus 188 ---------------------------------~~~~~~S~~g~~~--------di~ApG~~i~s~~~~----------- 215 (279)
T 3f7m_A 188 ---------------------------------DVRSTFSNYGRVV--------DIFAPGTSITSTWIG----------- 215 (279)
T ss_dssp ---------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEECGG-----------
T ss_pred ---------------------------------CCCCCCCCCCCCC--------eEEECCCCeEeecCC-----------
Confidence 3678899999965 999999999999876
Q ss_pred CCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 482 RSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 482 ~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
+.|..++|||||||+|||++|||+|++|. ++++||++|++||++....
T Consensus 216 --~~~~~~sGTS~AaP~vaG~aAll~~~~p~-t~~~v~~~L~~tA~~~~~~ 263 (279)
T 3f7m_A 216 --GRTNTISGTSMATPHIAGLAAYLFGLEGG-SAGAMCGRIQTLSTKNVLT 263 (279)
T ss_dssp --GCEEEECSHHHHHHHHHHHHHHHHHHTCC-CTTTHHHHHHHHSEESCCB
T ss_pred --CCEEEeeEHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhccccccc
Confidence 77999999999999999999999999999 9999999999999885443
|
| >2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=411.03 Aligned_cols=279 Identities=19% Similarity=0.165 Sum_probs=214.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+++..+|..+++|+||+|||||||||++||+|.+.-. ..+.++|.++.. +.....
T Consensus 41 i~~~~aw~~g~tG~gv~VaViDtGvd~~Hpdl~~~~~---------------------~~~~~d~~~~~~----~~~p~~ 95 (503)
T 2id4_A 41 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFC---------------------AEGSWDFNDNTN----LPKPRL 95 (503)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBC---------------------GGGCEETTTTBS----CCCCCS
T ss_pred cChHHHHhcCCCCCCeEEEEEeCCCCCCChhHhhccc---------------------ccCcccCCCCCC----CCCCCC
Confidence 4555678889999999999999999999999975311 012345554321 112235
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFP 241 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~ 241 (734)
|..||||||||||||...++. | +.||||+|+|+.+|+++.. .+..++++||+|+++++ +|||||||....
T Consensus 96 d~~gHGT~vAGiiaa~~~n~~---~-----~~GvAp~a~i~~~rv~~~~-~~~~~~~~ai~~a~~~~-~Iin~S~G~~~~ 165 (503)
T 2id4_A 96 SDDYHGTRCAGEIAAKKGNNF---C-----GVGVGYNAKISGIRILSGD-ITTEDEAASLIYGLDVN-DIYSCSWGPADD 165 (503)
T ss_dssp TTTTHHHHHHHHHHCCSSSSS---S-----CCCTTTTSEEEEEECTTSC-CCHHHHHHHTTTTTTTC-SEEEECEESCCS
T ss_pred CCCChHHHHHHHHHhccCCCC---C-----cEEECCCCEEEEEEeeCCC-CChHHHHHHHHhHhhcC-CEEEeCCCcCCC
Confidence 788999999999999764321 2 2899999999999998743 67888999999999988 999999998732
Q ss_pred CCC---CCCHHHHHHHHHH-----hCCcEEEEcCCCCCCCCC--CcCC--CCCceEEecccccCceeEEEEEeCCCeEee
Q 044427 242 FEY---FEDPIAIGSFHAM-----KYGILTSNSAGNSGPDPY--SVSN--FAPWTLTVAASSIDRKFVAQAVLGNGITYP 309 (734)
Q Consensus 242 ~~~---~~~~~~~a~~~a~-----~~Gi~vV~AAGN~G~~~~--~~~~--~ap~vitVga~~~~~~~~~~~~~~~g~~~~ 309 (734)
... ....+..++.++. .+|++||+||||+|.... ..+. .++++|+|||++.+
T Consensus 166 ~~~~~~~~~~~~~a~~~a~~~~r~~~GvlvV~AAGN~g~~~~~~~~~~~~~~~~vI~VgA~~~~---------------- 229 (503)
T 2id4_A 166 GRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAIDHK---------------- 229 (503)
T ss_dssp SSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEECTT----------------
T ss_pred CccccCchHHHHHHHHHHHHhcccCCCcEEEEecCCCCCcCCCCCCCcccCCCCEEEEEeeCCC----------------
Confidence 211 2234566666665 479999999999996542 2222 35678888875422
Q ss_pred eeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccC
Q 044427 310 GLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTD 389 (734)
Q Consensus 310 g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 389 (734)
T Consensus 230 -------------------------------------------------------------------------------- 229 (503)
T 2id4_A 230 -------------------------------------------------------------------------------- 229 (503)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEe----cCCCEe
Q 044427 390 LAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITA----PGVDIL 465 (734)
Q Consensus 390 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~A----PG~~I~ 465 (734)
+.++.||++||.. |++| ||..|+
T Consensus 230 ---------------------------------------------~~~a~~S~~g~~~--------~~~a~~~gpG~~I~ 256 (503)
T 2id4_A 230 ---------------------------------------------DLHPPYSEGCSAV--------MAVTYSSGSGEYIH 256 (503)
T ss_dssp ---------------------------------------------SCCCTTCCCCTTE--------EEEEECSBTTBCEE
T ss_pred ---------------------------------------------CCcCCcCCCCCcc--------eEeecCCCCCCceE
Confidence 3578899999987 8887 899999
Q ss_pred eccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC-Cc--------cc
Q 044427 466 ASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR-KQ--------ED 536 (734)
Q Consensus 466 sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~-~~--------~~ 536 (734)
++... ...|..++|||||||||||++|||+|++|+|++.+||++|++||+++... .. ..
T Consensus 257 st~~~------------~~~~~~~sGTS~AaP~VAG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~~~~~~~~~~~g~~ 324 (503)
T 2id4_A 257 SSDIN------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 324 (503)
T ss_dssp EECST------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSE
T ss_pred eecCC------------CCceecCCCccccchhhhHHHHHHHHhCCCCCHHHHHHHHHhccccCCCCcCCCceecCCCCc
Confidence 99543 27799999999999999999999999999999999999999999987654 10 01
Q ss_pred CCCCCCCCccCccccCCCce
Q 044427 537 LEFAYGSGHINPAQAIDPGL 556 (734)
Q Consensus 537 ~~~~~G~G~vn~~~Al~~~l 556 (734)
.+..||||+||+.+|++...
T Consensus 325 ~~~~~G~G~vda~~Av~~a~ 344 (503)
T 2id4_A 325 YSHRYGFGKIDAHKLIEMSK 344 (503)
T ss_dssp EBTTTBTCBCCHHHHHHHHT
T ss_pred cCcccCCcEecHHHHHHHHh
Confidence 25789999999999998543
|
| >2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-44 Score=400.74 Aligned_cols=241 Identities=22% Similarity=0.258 Sum_probs=188.3
Q ss_pred CccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 87 GKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 87 ~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
.|..+++|+||+|+|||||||++||+|.+. .....+++..+.+... ....+.|..||
T Consensus 18 aw~~~~tG~GV~VaVIDTGId~~HpdL~gr----------------------~~~~~~~~v~~~dg~~-f~~~~~D~~GH 74 (546)
T 2qtw_B 18 EYQPPDGGSLVEVYLLDTSIQSDHREIEGR----------------------VMVTDFENVPEEDGTR-FHRQASKCDSH 74 (546)
T ss_dssp ------CCTTSEEEEEESCCCTTSTTTTTT----------------------EEEEEEECCCCCC--------CTTTTHH
T ss_pred hcccCCCCCCcEEEEECCCCCCCChHHccc----------------------ccccCcccccCCCCcc-ccCCCCCCCCh
Confidence 566788999999999999999999999743 1111112211100000 01245678999
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC------CCcEEEEccCCC
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD------GVDIISVSLGSD 239 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~------g~dVINlSlG~~ 239 (734)
||||||||+|+. .||||+|+|+.+|+++..+ .+.+++++||+|+++. +++|||||||..
T Consensus 75 GThVAGIIag~~--------------~GVAP~A~L~~vkVl~~~G~g~~s~ii~ai~~a~~~~~~~~~g~~VINmSlGg~ 140 (546)
T 2qtw_B 75 GTHLAGVVSGRD--------------AGVAKGASMRSLRVLNCQGKGTVSGTLIGLEFIRKSQLVQPVGPLVVLLPLAGG 140 (546)
T ss_dssp HHHHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSEEEHHHHHHHHHHHHHHHHHSCCSCEEEEECEEEE
T ss_pred HHHHHHHHhccC--------------CCcCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHhhhhccCCCeEEEecCCCC
Confidence 999999999874 6999999999999998876 6788999999999984 899999999976
Q ss_pred CCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC-CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 240 FPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY-SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 240 ~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~-~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
....+..++.++.++|++||+||||+|.... ..+...+++|+|||++.+.
T Consensus 141 -----~s~~l~~Ai~~A~~~GvlvVaAAGN~g~d~~~~sPAs~~~VItVGA~d~~g------------------------ 191 (546)
T 2qtw_B 141 -----YSRVLNAACQRLARAGVVLVTAAGNFRDDACLYSPASAPEVITVGATNAQD------------------------ 191 (546)
T ss_dssp -----CCHHHHHHHHHHHHTTCEEEEECCSBSSBGGGEETTTCTTSEEEEEECTTS------------------------
T ss_pred -----CcHHHHHHHHHHHhCCCEEEEECCCCCCCCCccCcccCCCEEEEEEecCCC------------------------
Confidence 2457788888999999999999999997643 3356679999999865431
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 192 -------------------------------------------------------------------------------- 191 (546)
T 2qtw_B 192 -------------------------------------------------------------------------------- 191 (546)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCcee----eccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVV----SFSSRGPNPITVDILKPDITAPGVDILASWSPVAPP 474 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a----~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 474 (734)
.++ .||++|+. |||+|||++|+++++..
T Consensus 192 -------------------------------------~~a~~s~~fSn~G~~--------vDI~APG~~I~St~~~~--- 223 (546)
T 2qtw_B 192 -------------------------------------QPVTLGTLGTNFGRC--------VDLFAPGEDIIGASSDC--- 223 (546)
T ss_dssp -------------------------------------CBCEETTEECCBSTT--------CCEEEECSSEEEECTTS---
T ss_pred -------------------------------------CcccccCCcCCCCCc--------ceEEecCccEEeeccCC---
Confidence 111 28999974 59999999999998762
Q ss_pred CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccc
Q 044427 475 SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVM 529 (734)
Q Consensus 475 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~ 529 (734)
...|..++|||||||||||++|||+|++|.|++.+||++|++||.+.
T Consensus 224 --------~~~y~~~SGTSmAAP~VAG~aALlls~~P~ltp~qVr~~L~~tAt~~ 270 (546)
T 2qtw_B 224 --------STCFVSQSGTSQAAAHVAGIAAMMLSAEPELTLAELRQRLIHFSAKD 270 (546)
T ss_dssp --------TTCEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTSEES
T ss_pred --------CCcEeeeCcCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhcccc
Confidence 25799999999999999999999999999999999999999999764
|
| >3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=400.15 Aligned_cols=311 Identities=18% Similarity=0.171 Sum_probs=199.4
Q ss_pred ccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCC
Q 044427 83 GFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRD 162 (734)
Q Consensus 83 g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D 162 (734)
++..+|..+++|+||+|||||||||++||+|.+.- ..+.++|.++.. +.....|
T Consensus 58 nv~~aw~~g~tG~GV~VaViDtGid~~HpDL~~n~----------------------~~~~~~~~~~~~----dp~p~~~ 111 (600)
T 3hjr_A 58 NLWWAHRTGVLGQGVNVAVVDDGLAIAHPDLADNV----------------------RPGSKNVVTGSD----DPTPTDP 111 (600)
T ss_dssp CCHHHHHHTCSCTTCEEEEESSCCCTTCTTTGGGB----------------------CSCCBCTTTSSS----CCCCCST
T ss_pred CHHHHHHcCCCCCCeEEEEEcCCCCCCChhHhhcc----------------------ccCcceeecCCC----CCCCCCC
Confidence 33446788999999999999999999999997431 112233433321 1123345
Q ss_pred CCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHH-HHHHhCCCcEEEEccCCCC
Q 044427 163 SEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAF-DDAIADGVDIISVSLGSDF 240 (734)
Q Consensus 163 ~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai-~~ai~~g~dVINlSlG~~~ 240 (734)
..+|||||||||||..+. .| +.||||+|+|+.+|++++.+ ....+++.|+ +++..++++|||+|||...
T Consensus 112 ~~gHGThVAGiIAa~~n~----~g-----~~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~ 182 (600)
T 3hjr_A 112 DTAHGTSVSGIIAAVDNA----IG-----TKGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSV 182 (600)
T ss_dssp TCCHHHHHHHHHHCCSSS----SS-----CCCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCC
T ss_pred CCChHHHHHHHHhEeCCC----CC-----cEEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccc
Confidence 789999999999986321 22 28999999999999998765 6677777766 6778899999999999764
Q ss_pred CCCCCCCHHH-----HHHHHH--HhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeec
Q 044427 241 PFEYFEDPIA-----IGSFHA--MKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSI 313 (734)
Q Consensus 241 ~~~~~~~~~~-----~a~~~a--~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (734)
......+... .++..+ ..+|+++|+||||.+....... ..+.+ .+++..
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~AaGNg~~~~~~~~------~~~~~------------~g~~~~------ 238 (600)
T 3hjr_A 183 VDPRSANSLDQSQLDRLFEQQTLKAQGAAYIKAAGNGFNKIAAGG------YVLNR------------TGNGPK------ 238 (600)
T ss_dssp SSCCCSCSHHHHHHHHHHHHHHHSTTCCEEEEECCSCSSEEEETT------EEEEE------------ESSCCC------
T ss_pred cCCccCCcchhhhHHHHHHHhhhccCCcEEEEeccCccccccccc------ccccc------------CCCCCC------
Confidence 3333333222 122111 2689999999999764321000 00000 000000
Q ss_pred ccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccC
Q 044427 314 NSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFS 393 (734)
Q Consensus 314 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 393 (734)
+ ....|.... .......| ++|.+
T Consensus 239 ---------~------------------~~~~~~~d~--~~~~~~~I----------------sVgA~------------ 261 (600)
T 3hjr_A 239 ---------L------------------PFENSNLDP--SNSNFWNL----------------VVSAL------------ 261 (600)
T ss_dssp ---------C------------------CSSBTTSSG--GGGSSSEE----------------EEEEE------------
T ss_pred ---------C------------------CcccccccC--ccccCcce----------------EEeee------------
Confidence 0 000111000 00000011 12222
Q ss_pred cCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEe--------
Q 044427 394 YPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDIL-------- 465 (734)
Q Consensus 394 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~-------- 465 (734)
...+.++.||++|+.. +++|||..+.
T Consensus 262 --------------------------------------~~~g~~a~yS~~G~~v--------~~~apg~~~~~~~~~~vt 295 (600)
T 3hjr_A 262 --------------------------------------NADGVRSSYSSVGSNI--------FLSATGGEYGTDTPAMVT 295 (600)
T ss_dssp --------------------------------------CTTSSBCTTCCBCTTC--------CEEEECCSCSSSSCCEEE
T ss_pred --------------------------------------cCCCCEeecccCCcce--------eeccCCCCCCCCCcceee
Confidence 2345789999999987 8999997632
Q ss_pred eccCCCCCC-------------CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCC
Q 044427 466 ASWSPVAPP-------------SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSR 532 (734)
Q Consensus 466 sa~~~~~~~-------------~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~ 532 (734)
...++.... .....+.....|..++|||||||||||++|||+|++|+|++++||++|++||++++..
T Consensus 296 ~~~pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sGTSmAaP~VAGvaALll~a~P~lt~~~v~~~L~~TA~~~d~~ 375 (600)
T 3hjr_A 296 TDLPGCDMGYNRTDDPSTNRLHGNSQLDASCDYNGVMNGTSSATPSTSGAMALLMSAYPDLSVRDLRDLLARSATRVDAK 375 (600)
T ss_dssp ECCSSTTSSSSSTTSCCSSTTTTCTTTCTTCCEEEEECSHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCSTT
T ss_pred ecCCCccccccccCCccccccccccccCCCCCceeccccccccchhHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCC
Confidence 222211000 0001122236789999999999999999999999999999999999999999998765
Q ss_pred Cccc----------------------------CCCCCCCCccCccccCCCc
Q 044427 533 KQED----------------------------LEFAYGSGHINPAQAIDPG 555 (734)
Q Consensus 533 ~~~~----------------------------~~~~~G~G~vn~~~Al~~~ 555 (734)
..+. ....||+|+||+.+|++.+
T Consensus 376 ~~p~~~~~~~~~~~~~~~~~~~~w~~N~aG~~~s~~yGfG~vDA~~aV~~A 426 (600)
T 3hjr_A 376 HQPVMVSYTSSTGKVRDVKGLEGWERNAAGMWFSPTYGFGLIDVNKALELA 426 (600)
T ss_dssp CCCEEEEEECTTSCEEEEEEECCSEECTTSCEEBTTTBTCBCCHHHHHHHH
T ss_pred CCcccccccccccccccccccCCcccccCCceEccccCCceecHHHHHHHh
Confidence 4320 2567999999999998744
|
| >1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.9e-24 Score=245.68 Aligned_cols=98 Identities=21% Similarity=0.297 Sum_probs=76.8
Q ss_pred ceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCCCCC---CCHHHHHHHHHHhCCcEEE
Q 044427 191 TARGGVPNARISMYKVCWSDGCATADILAAFDDAIA---DGVDIISVSLGSDFPFEYF---EDPIAIGSFHAMKYGILTS 264 (734)
Q Consensus 191 ~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~---~g~dVINlSlG~~~~~~~~---~~~~~~a~~~a~~~Gi~vV 264 (734)
.+.||||+|+|+.|++. ....+++++|+||++ ++++|||+|||... ..+. ...+..++.+|..+||+||
T Consensus 273 ~~~gvAp~a~i~~~~~~----~~~~~~~~ai~~av~~~~~~~~VIS~S~G~~e-~~~~~~~~~~~~~~~~~a~~~Gi~vv 347 (552)
T 1t1e_A 273 VAGALAPGAKIAVYFAP----NTDAGFLNAITTAVHDPTHKPSIVSISWGGPE-DSWAPASIAAMNRAFLDAAALGVTVL 347 (552)
T ss_dssp HHHHHCTTSEEEEEECC----SSHHHHHHHHHHHHTCTTTCCSEEEECEEEEG-GGSCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred hhhccCCCCeEEEEEcC----CCCchHHHHHHHHHhcccCCCCEEEecccCCc-ccCCHHHHHHHHHHHHHHHhCCeEEE
Confidence 34899999999999973 256789999999998 79999999999873 1111 2345666677889999999
Q ss_pred EcCCCCCCCC--------CCcCCCCCceEEecccccC
Q 044427 265 NSAGNSGPDP--------YSVSNFAPWTLTVAASSID 293 (734)
Q Consensus 265 ~AAGN~G~~~--------~~~~~~ap~vitVga~~~~ 293 (734)
+||||+|... ..++...|++++||+++..
T Consensus 348 ~AsGd~G~~~~~~~~~~~~~~PAs~P~V~aVGat~~~ 384 (552)
T 1t1e_A 348 AAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLV 384 (552)
T ss_dssp EECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEE
T ss_pred EecCCCCCCCCCCCCcccccCcccCCCEEEEeccccc
Confidence 9999999653 2345567999999998643
|
| >1ga6_A Serine-carboxyl proteinase; serine-carboxyl proteinase, hydrolase-hydrolase inhibitor CO; 1.00A {Pseudomonas SP} SCOP: c.41.1.2 PDB: 1ga4_A* 1ga1_A 1kdv_A* 1kdy_A* 1kdz_A* 1ke1_A* 1ke2_A* 1nlu_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.9e-21 Score=208.37 Aligned_cols=101 Identities=17% Similarity=0.114 Sum_probs=79.3
Q ss_pred eeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCCCCC---CCCCCHHHHHHHHHHhCCcEEEEcCC
Q 044427 193 RGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSDFPF---EYFEDPIAIGSFHAMKYGILTSNSAG 268 (734)
Q Consensus 193 ~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~~~~---~~~~~~~~~a~~~a~~~Gi~vV~AAG 268 (734)
..+||+++++.|++.+..+++.++++++|+||++ ++++|||||||..... ......+..++.+|..+||+||+|||
T Consensus 90 g~~aP~a~~~~~~~~~~~~~~~~~~~~ai~~av~~~~~~ViS~S~G~~e~~~~~~~~~~~~~~~~~~a~~~Gitvv~AsG 169 (372)
T 1ga6_A 90 GSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQGQTFSVSSG 169 (372)
T ss_dssp HHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred hhcCCCCcEEEEEeCCCCCcccHHHHHHHHHHHhcCCCCEEEeCCCCCCCCCchHHHHHHHHHHHHHHHhCCcEEEEEEC
Confidence 4468999999999987655678899999999998 8999999999986211 11224566677778899999999999
Q ss_pred CCCCCCC-------------CcCCCCCceEEecccccC
Q 044427 269 NSGPDPY-------------SVSNFAPWTLTVAASSID 293 (734)
Q Consensus 269 N~G~~~~-------------~~~~~ap~vitVga~~~~ 293 (734)
|+|...+ ..+...|++++||+++..
T Consensus 170 d~G~~~~~~~g~~~~~~~~~~~PAs~P~V~aVGat~~~ 207 (372)
T 1ga6_A 170 DEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTTLY 207 (372)
T ss_dssp SBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEEEE
T ss_pred CCCCccccccCccCCccCCcCCCCCCCCeEEEEeeecc
Confidence 9997532 334567999999998653
|
| >3edy_A Tripeptidyl-peptidase 1; protease, TPP1, sedolisin, batten disease, lincl, zymogen, P exopeptidase, endopeptidase, S53 family, CLN2; HET: NAG; 1.85A {Homo sapiens} PDB: 3ee6_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-09 Score=120.22 Aligned_cols=98 Identities=16% Similarity=0.132 Sum_probs=60.8
Q ss_pred eeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh--CCCcEEEEccCCCCCCCC---CCCHHHHHHHHHHhCCcEEEEcC
Q 044427 193 RGGVPNARISMYKVCWSDGCATADILAAFDDAIA--DGVDIISVSLGSDFPFEY---FEDPIAIGSFHAMKYGILTSNSA 267 (734)
Q Consensus 193 ~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~--~g~dVINlSlG~~~~~~~---~~~~~~~a~~~a~~~Gi~vV~AA 267 (734)
.++++...++.|-.-+. ......++..+++... +-++||++|||... ... +...+...+..+..+||.|++|+
T Consensus 262 ~a~~~~i~~~~~~~~g~-~~~~e~~l~~l~~l~~~~~~~~ViS~S~G~~e-~~~~~~y~~~~~~~~~~~~~~Gitv~~AS 339 (544)
T 3edy_A 262 MSAGANISTWVYSSPGR-HEGQEPFLQWLMLLSNESALPHVHTVSYGDDE-DSLSSAYIQRVNTELMKAAARGLTLLFAS 339 (544)
T ss_dssp HHHSTTSEEEEECCCSC-CTTCCHHHHHHHHHTTCSSCCSEEEEECCEEG-GGSCHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hccCCCceEEEEecCCc-ccccccHHHHHHHHhccCCCCcEEEecCCCcc-cccCHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 34455555554433111 1122345554544433 46899999999883 111 11234445556788999999999
Q ss_pred CCCCCCCC----------CcCCCCCceEEeccccc
Q 044427 268 GNSGPDPY----------SVSNFAPWTLTVAASSI 292 (734)
Q Consensus 268 GN~G~~~~----------~~~~~ap~vitVga~~~ 292 (734)
||+|.... ..+...||+++||+++.
T Consensus 340 GD~G~~~~~~~~~~~~~~~~Pas~P~VtaVGgT~l 374 (544)
T 3edy_A 340 GDSGAGCWSVSGRHQFRPTFPASSPYVTTVGGTSF 374 (544)
T ss_dssp CSSTTBCEEETTEEECCCEETTTCTTSEEEEEEEE
T ss_pred CCCCccccCCCCCccccCCCcCCCCcEEEEeeeec
Confidence 99997531 34556799999999864
|
| >2w2n_P Proprotein convertase subtilisin/kexin type 9; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2m_P 2w2o_P 2w2p_P 2w2q_P 2xtj_P | Back alignment and structure |
|---|
Probab=98.49 E-value=7.4e-08 Score=85.99 Aligned_cols=64 Identities=9% Similarity=0.058 Sum_probs=56.0
Q ss_pred CCchhhHHHHHHHHhCCccccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCccccc
Q 044427 9 FPVASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKI 73 (734)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~ 73 (734)
+.....|++|+++++.+ ...+.+|+|+|++.|+||+++++++++++|+++|+|.+|+|++.++.
T Consensus 50 ~~~~~~h~~~l~s~~~~-~~~~~~i~~sY~~~~~GFaa~Lt~~~~~~L~~~P~V~~VE~D~~v~~ 113 (114)
T 2w2n_P 50 LSQSERTARRLQAQAAR-RGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 113 (114)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCCCEEEEEECSSSSEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhhh-cccCCceEEEecccceEEEEEcCHHHHHHHHcCCCccEEEeCceEec
Confidence 34566899999999864 34677999999999999999999999999999999999999987754
|
| >3cnq_P Subtilisin BPN'; uncleaved, proenzyme, substrate complex, hydrolase, metal- binding, protease, secreted, serine protease, sporulation; 1.71A {Bacillus amyloliquefaciens} PDB: 3bgo_P 3co0_P 1spb_P 1scj_B | Back alignment and structure |
|---|
Probab=98.07 E-value=4.8e-06 Score=69.22 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=43.7
Q ss_pred cCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccccccCC
Q 044427 29 AKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKIHTTR 77 (734)
Q Consensus 29 ~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~~~~~ 77 (734)
.+.++.|+|++ |+||+++++++++++|+++|+|.+|+|++.++++++.
T Consensus 32 ~g~~i~~~y~~-~~Gfaa~l~~~~~~~L~~~p~V~~Ve~D~~v~~~tt~ 79 (80)
T 3cnq_P 32 KGGKLQKCFKY-VDAASATLNEKAVEELKKDPSVAYVEEDKLYRALSAT 79 (80)
T ss_dssp TTCEEEEECSS-SSEEEEECCHHHHHHHHTCTTEEEEEECCEEEECCC-
T ss_pred cCCcceEEEcc-cEEEEEEcCHHHHHHHHhCCCccEEEeCcEEEEeeec
Confidence 45689999998 9999999999999999999999999999999987654
|
| >2qtw_A Proprotein convertase subtilisin/kexin type 9 Pro; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_A 2pmw_A 3h42_A 3bps_P 3gcw_P 3gcx_P 3p5b_P 3p5c_P | Back alignment and structure |
|---|
Probab=97.88 E-value=9.3e-06 Score=73.24 Aligned_cols=62 Identities=10% Similarity=0.046 Sum_probs=49.4
Q ss_pred chhhHHHHHHHHhCCccccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCccccc
Q 044427 11 VASTHHSMLQNVLGSTLSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKI 73 (734)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~ 73 (734)
....|.+++.++.. ....+.+++|+|++.||||+++++.+++++|++.|+|.+|++++.++.
T Consensus 62 ~~~~~~~~l~~~~~-~r~~g~~i~~~Y~~~~~GFaa~l~~~~~~~L~~~p~V~~VE~D~~v~a 123 (124)
T 2qtw_A 62 QSERTARRLQAQAA-RRGYLTKILHVFHGLLPGFLVKMSGDLLELALKLPHVDYIEEDSSVFA 123 (124)
T ss_dssp HHHHHHHHHHHHHH-HTTCCCEEEEEECSSSCEEEEECCGGGHHHHHTSTTEEEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHh-hcccCCceEEEecccceEEEEEcCHHHHHHHHcCCCCcEEEeCceEec
Confidence 34456666666542 111456899999999999999999999999999999999999987653
|
| >3icu_A E3 ubiquitin-protein ligase RNF128; E3 ligase, energy, PA domain, transmembrane,protein turnover conjugation pathway; HET: NAG; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.86 E-value=4.3e-05 Score=74.03 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=67.3
Q ss_pred ccccccccCCCCC-------cCceEEEEeeCC-c-----chhhhccCceEEEEecCCc-cC-c-----ccCcCcceEEee
Q 044427 343 ARFCAADALNSYK-------VEGKIVFCESLL-D-----GSDILAVNGLGTIMADSVF-TD-L-----AFSYPLPATLIS 402 (734)
Q Consensus 343 ~~~c~~~~~~~~~-------~~gkiv~~~~~~-~-----~~~~~~~Ga~g~i~~n~~~-~~-~-----~~~~~~p~~~i~ 402 (734)
...|.+..+.... .++||+|++|+. | ..+++++||.++|+||+.. .. . .....||+++|+
T Consensus 83 ~~GC~~~~~~~~~~~~~~~~~~gkIaLV~RG~~CsF~~Kv~nAq~aGA~avIIyNn~~~g~~~~~m~~~~~~~IPsv~Is 162 (194)
T 3icu_A 83 LNACNPHTNFTVPTVWGSTVQVSWLALIQRGGGCTFADKIHLAYERGASGAVIFNFPGTRNEVIPMSHPGAVDIVAIMIG 162 (194)
T ss_dssp TTCCSTTCCBCCCBCTTSSCBCCEEEEEESCTTCCHHHHHHHHHHTTCSEEEEECCTTCTTCCCCCCCTTCCSSEEEEEC
T ss_pred cCCCCCCccccCCcccccccCCCeEEEEECCCCcCHHHHHHHHHHCCCcEEEEEeCCCCCCceeeecCCCCCceeEEEEC
Confidence 5689876643222 478999999999 6 7899999999999999852 11 1 234579999999
Q ss_pred ccchHHHHHHHhcCCCcEEEEEecc
Q 044427 403 KENGQDILDYIRSTEYPIATIMFGE 427 (734)
Q Consensus 403 ~~~~~~l~~~~~~~~~~~~~i~~~~ 427 (734)
..+|+.|++.+.++...+++|....
T Consensus 163 ~~~G~~L~~~L~~G~~Vtvti~vg~ 187 (194)
T 3icu_A 163 NLKGTKILQSIQRGIQVTMVIEVGK 187 (194)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEEEEE
T ss_pred HHHHHHHHHHHHCCCeEEEEEECCC
Confidence 9999999999999988887776654
|
| >1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A | Back alignment and structure |
|---|
Probab=97.69 E-value=6.1e-05 Score=61.80 Aligned_cols=57 Identities=16% Similarity=0.244 Sum_probs=47.8
Q ss_pred CchhhHHHHHHHHhCCccccCcceEEEec-ceeeEEEEEeCHHHHHHHhcC--CCeeEEEeCccccc
Q 044427 10 PVASTHHSMLQNVLGSTLSAKESLVYSYG-RSFNGFAAKLTDEEVARFSET--EGVISVIPNHKLKI 73 (734)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~v~~~y~-~~~ng~s~~~~~~~i~~L~~~--p~V~~v~~~~~~~~ 73 (734)
...+.|.++++..- .+|.|.|+ .+|+||+++++++.+++|+++ |.|.+||+++.+++
T Consensus 16 ~~~~~~~~~~~~~g-------g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D~~v~~ 75 (76)
T 1v5i_B 16 DKIRETKDEVIAEG-------GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDHVAHA 75 (76)
T ss_dssp HHHHHHHHHHHHHT-------CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECCEEEC
T ss_pred HHHHHHHHHHHhhC-------CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCCcEEeC
Confidence 44567878877653 46889994 899999999999999999999 88999999987653
|
| >2z30_B TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 2z2y_B 3a3p_B 2z56_B 2z58_B 2z57_B 3a3n_B 3a3o_B | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0026 Score=50.20 Aligned_cols=45 Identities=18% Similarity=0.336 Sum_probs=40.7
Q ss_pred cccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCcccc
Q 044427 27 LSAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLK 72 (734)
Q Consensus 27 ~~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~ 72 (734)
...+.+|.|+| ..+++++++++.+.+++|+++|+|++|+++...+
T Consensus 19 ~~~gG~i~~~~-~~I~a~~~~lp~~~~~~L~~~p~V~yVE~D~~v~ 63 (65)
T 2z30_B 19 LGIGGHIVYQF-KLIPAVVVDVPANAVGKLKKMPGVEKVEFDHQAV 63 (65)
T ss_dssp GGGTCEEEEEC-SSSSEEEEEECGGGHHHHHTSTTEEEEEECCEEE
T ss_pred HHCCCEEEEEe-cCCcEEEEEeCHHHHHHHhcCCCceEEecCcEEE
Confidence 35678999999 6799999999999999999999999999998654
|
| >2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.034 Score=49.67 Aligned_cols=75 Identities=19% Similarity=0.198 Sum_probs=57.2
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE-cCceEEEeE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE-DGVHQVRSP 695 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~-~~~~~v~~P 695 (734)
+.+.+++|+|+|+.+..|+..... -++++|.+-.+ ++|++..++|+|.+.. .+.+.+.+.+. ++...+.++
T Consensus 42 ~~~~~~~l~N~g~~~~~f~~~~~~----~F~i~P~~g~L-~pg~~~~i~V~F~P~~---~g~~~~~l~v~~~~g~~~~v~ 113 (122)
T 2ys4_A 42 STQKILLVRNIGNKNAVFHIKTCR----PFSIEPAIGTL-NVGESMQLEVEFEPQS---VGDHSGRLIVCYDTGEKVFVS 113 (122)
T ss_dssp CEEEEEEEECCSSSCEEEEEECCT----TEEEESSEEEE-CTTCEEEEEEEECCSS---SBCCCCBCEEEESSSCEECCE
T ss_pred eEEEEEEEEECCCCCEEEEEecCC----CeEEECCcCEE-CCCCEEEEEEEEEcCC---CccEEEEEEEEECCCCEEEEE
Confidence 577889999999999999877642 36678999999 5899999999999985 33566666655 555666666
Q ss_pred EEEE
Q 044427 696 VVIY 699 (734)
Q Consensus 696 ~~~~ 699 (734)
+.+.
T Consensus 114 L~G~ 117 (122)
T 2ys4_A 114 LYGA 117 (122)
T ss_dssp ECCC
T ss_pred EEEE
Confidence 5443
|
| >3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.72 Score=42.02 Aligned_cols=84 Identities=12% Similarity=0.072 Sum_probs=63.1
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCC----CceEEEEEcCeeEEeeCCcEEEEEEEEEcccc------CCCCceEEEEEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMP----ASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKI------AQQPIMSGAIVWE 686 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~----~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~------~~~~~~~G~i~~~ 686 (734)
..+.+++|+|.|.-+.+|++..... ..-.++++|..-++ .+|++.+++|++.++.. ....-++.-|++.
T Consensus 44 ~~~~~l~I~Ntg~vpa~F~f~~~~~~~~~~~~wl~v~P~~G~L-~Pge~~~I~v~~~v~~~~~~~ln~g~~~l~diLvL~ 122 (140)
T 3qbt_B 44 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 122 (140)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCHHHHHHHHHSSSCSCEEEEEE
T ss_pred eeeeEEEEEcCCccceEEEEecCCCchhhhhHhhhcCCccccc-CCCCeeEEEEEEEEccCcccccccchhhhheeEEEE
Confidence 4567899999999999999975421 12347778999999 68999999999987542 1123456677776
Q ss_pred -cCceEEEeEEEEEec
Q 044427 687 -DGVHQVRSPVVIYNI 701 (734)
Q Consensus 687 -~~~~~v~~P~~~~~~ 701 (734)
+++.+..+|+.+.+.
T Consensus 123 Ve~G~d~fI~v~g~~~ 138 (140)
T 3qbt_B 123 LDRGKDYFLTISGNYL 138 (140)
T ss_dssp ETTSCEEEEEEEEEEC
T ss_pred eecCCcEEEEEecccc
Confidence 788888999988753
|
| >3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.70A {Shewanella amazonensis SB2B} | Back alignment and structure |
|---|
Probab=92.82 E-value=0.23 Score=54.68 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=56.4
Q ss_pred CCCcCceEEEEeeCCcc------------------hhhhccCceEEEEecCCccC--------c--c-cCcCcceEEeec
Q 044427 353 SYKVEGKIVFCESLLDG------------------SDILAVNGLGTIMADSVFTD--------L--A-FSYPLPATLISK 403 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~~~------------------~~~~~~Ga~g~i~~n~~~~~--------~--~-~~~~~p~~~i~~ 403 (734)
..+++|||||+.++.+. .++.++||+|+|++++.... + . ....||++.|+.
T Consensus 124 ~~dvkGKIVlv~~~~~~~~~~~~y~~~~~kr~~~a~~A~~aGA~avIi~~~~~~~~~~~~tg~~~~~~~~~~IP~~~Is~ 203 (444)
T 3iib_A 124 AGSLNDKIAFIDAKTERHRDGKGYGQTASGRSRGAVAAAEKGAVGIIIRSIGTDHDRMAHTGMMRYEEGVTAIPAAAISN 203 (444)
T ss_dssp TTTTTTCEEEECCCCCCCTTCHHHHHHHHHHHHHHHHHHHTTCSEEEEECSCSCCSSCCCCCBCCCCTTSCCCCEEEECH
T ss_pred ccccCccEEEEeCCCCCCcccccccchhhhhhhHHHHHHHCCCeEEEEEccCCcccccccCCccccCCCCCCCCeEEecH
Confidence 46899999999987541 35889999999999964321 1 1 234699999999
Q ss_pred cchHHHHHHHhcCCCcEEEEEec
Q 044427 404 ENGQDILDYIRSTEYPIATIMFG 426 (734)
Q Consensus 404 ~~~~~l~~~~~~~~~~~~~i~~~ 426 (734)
+++..|+..+..+...++++...
T Consensus 204 ~da~~L~~~l~~g~~~~v~l~~~ 226 (444)
T 3iib_A 204 PDADLINAMLKRDKEVVISLELG 226 (444)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEEe
Confidence 99999999998776665555543
|
| >2ek8_A Aminopeptidase; metalloproteinase, hydrolase; 1.80A {Aneurinibacillus SP} PDB: 2ek9_A* | Back alignment and structure |
|---|
Probab=91.29 E-value=0.31 Score=53.16 Aligned_cols=64 Identities=16% Similarity=0.140 Sum_probs=51.6
Q ss_pred CCCCCcCceEEEEeeCCc-----chhhhccCceEEEEecCCccCc------ccCcCcceEEeeccchHHHHHHHh
Q 044427 351 LNSYKVEGKIVFCESLLD-----GSDILAVNGLGTIMADSVFTDL------AFSYPLPATLISKENGQDILDYIR 414 (734)
Q Consensus 351 ~~~~~~~gkiv~~~~~~~-----~~~~~~~Ga~g~i~~n~~~~~~------~~~~~~p~~~i~~~~~~~l~~~~~ 414 (734)
+...+++||||++.++.+ ..+++++||+|+|++++....+ .....+|...++.+++..|+..+.
T Consensus 108 ~~~~dv~GkIvlv~~g~~~~~~k~~~A~~~GA~gvIi~~~~~~~~~g~~~~~~~~~IP~~~Is~~~a~~L~~~l~ 182 (421)
T 2ek8_A 108 VAGKDLNGKIALIQRGNISFADKVRNAAKQGAKAVIIYNNTDGKLNGTLGGSDASFVAAVGITKQEGDALAANLR 182 (421)
T ss_dssp TTTSCCTTSEEEEECCSSCHHHHHHHHHHTTCSEEEEECSSSSCCCCBCSSCCTTCCEEEEECHHHHHHHHHHHH
T ss_pred cCCCCcCceEEEEeCCCCCHHHHHHHHHHCCCeEEEEEeCCCcccccccCCCCCCCccEEEeCHHHHHHHHHHhh
Confidence 334579999999998764 7789999999999999865332 134568999999999999999884
|
| >3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.19 Score=61.68 Aligned_cols=33 Identities=18% Similarity=0.321 Sum_probs=27.8
Q ss_pred cccccCc--cCCCCCCCCEEEEEccCCCCCCCCCC
Q 044427 82 MGFSKGK--LSSSQEGSVIIGLLDTGIWPESASFN 114 (734)
Q Consensus 82 ~g~~~~~--~~~~~G~GV~VgVIDtGid~~Hp~f~ 114 (734)
+|+...+ ...+.|+||+|||+|||||+.+|.|+
T Consensus 21 t~~~~fl~~~P~ydGrgv~iai~DtGVDP~a~glq 55 (1354)
T 3lxu_X 21 TGVLNFLQKYPEYDGRDVTIAIFDSGVDPRATGLE 55 (1354)
T ss_dssp TTTCSSGGGSTTCSSTTCEEEEEESCCCTTSTTSS
T ss_pred hhHHHHHHhCCCCCCCccEEEEEeCCCCCCCCcce
Confidence 4444433 67899999999999999999999997
|
| >2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.66 E-value=1 Score=38.85 Aligned_cols=79 Identities=9% Similarity=0.132 Sum_probs=54.2
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeC-CCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE-cC-ceEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYM-PASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE-DG-VHQVR 693 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~-~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~-~~-~~~v~ 693 (734)
..+.+++++|.|+.+..|+..... ..+...+++|.+-.+ ++|++++++|++.+... +.+.=.|.+. .+ ...++
T Consensus 27 ~~~~~~~l~N~g~~p~~~~~~~~~~~~~~~f~v~p~~g~i-~pg~~~~i~V~f~~~~~---g~f~~~i~v~~~g~~~~~~ 102 (112)
T 2e6j_A 27 AHCYEAILYNKGSIDALFNMTPPTSALGACFVFSPKEGII-EPSGVQAIQISFSSIIL---GNFEEEFLVNVNGSPEPVK 102 (112)
T ss_dssp CEEEEEEEEECCSSCEEEEECCCSSHHHHHCEEESSEEEE-CTTBCCEEEEEECCCCC---EEEEEEECEEESSCSSCCC
T ss_pred EEEEEEEEEECCcceEEEEEecCCccccCcEEEECCcCEE-CCCCEEEEEEEEECCCc---ceEEEEEEEEECCCCceEE
Confidence 467789999999999999984321 113347778999888 58999999999998752 3344456665 33 23344
Q ss_pred eEEEEE
Q 044427 694 SPVVIY 699 (734)
Q Consensus 694 ~P~~~~ 699 (734)
+-+-+.
T Consensus 103 L~i~G~ 108 (112)
T 2e6j_A 103 LTIRGC 108 (112)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 444443
|
| >2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=90.45 E-value=1.4 Score=38.63 Aligned_cols=57 Identities=16% Similarity=0.116 Sum_probs=46.8
Q ss_pred ceEEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEcccc
Q 044427 615 PIYGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKI 673 (734)
Q Consensus 615 ~~~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~ 673 (734)
...-.+++.+.|....+.+|+++++..+|+.+. .+..+++ ++|+..++.|.|.++..
T Consensus 30 ~I~N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~-g~~~i~v-~~g~~~~~~v~v~~~~~ 86 (118)
T 2r39_A 30 EVENTYTLKVINKTQQVQEYNLDVKGLNDVSWY-GKQTIQV-EPGEVLNLPMSLGADPD 86 (118)
T ss_dssp SEEEEEEEEEEECSSSCEEEEEEEESCSSCEEE-SCCEEEE-CTTCEEEEEEEEEECGG
T ss_pred eEEEEEEEEEEECCCCCEEEEEEEeCCcccEEe-CCCcEEE-CCCCEEEEEEEEEEChH
Confidence 456778999999999999999999987776653 3566888 58999999999988764
|
| >2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.57 E-value=4 Score=39.98 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=56.4
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceEEEEEEE--c--Cc--e
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMSGAIVWE--D--GV--H 690 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~G~i~~~--~--~~--~ 690 (734)
..+.+++++|.|+.+.+++... .|.-+++ .+..-.+ ++|++.+++|+++......-+...+.|++. + +. .
T Consensus 20 ~~~~~~~i~N~g~~pl~i~~~~-~p~~~~~--~~~~~~I-~PG~~g~I~vt~~~~~~~~~G~~~~~i~v~~~~~~~~~~~ 95 (220)
T 2qsv_A 20 EGVVRLVVNNTDESDLQVAVVS-LPSFVSL--DDRAFRL-QAREPRELNLSLAVPRNMPPGMKDEPLVLEVTSPETGKKA 95 (220)
T ss_dssp CCEEEEEEEECSSSCEEEEEEE-CCTTEEC--SCCEEEE-CSSSCEEEEEEECCCTTCCSEEEEEEEEEEEECTTTCCEE
T ss_pred cceEEEEEEeCCCCceEEEecc-CCCceEe--eeCccee-CCCCceEEEEEEcchhcccCCceeeEEEEEEEcCCCCccc
Confidence 3556889999999998888743 2555444 3444456 689999999999988765456677777775 3 22 2
Q ss_pred EEEeEEEEEe
Q 044427 691 QVRSPVVIYN 700 (734)
Q Consensus 691 ~v~~P~~~~~ 700 (734)
..++|+.+..
T Consensus 96 ~~~i~v~g~v 105 (220)
T 2qsv_A 96 VDSVMVSLPL 105 (220)
T ss_dssp EEEEEEEEEE
T ss_pred ccEEEEEEEE
Confidence 4578877754
|
| >3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A | Back alignment and structure |
|---|
Probab=81.89 E-value=7.8 Score=41.10 Aligned_cols=84 Identities=12% Similarity=0.069 Sum_probs=62.5
Q ss_pred EEEEEEEEEecCCCCeeEEEEeeCCC----ceEEEEEcCeeEEeeCCcEEEEEEEEEcccc------CCCCceEEEEEEE
Q 044427 617 YGVFTRTVTNVGSPNSTYTVRPYMPA----SVSVDVEPQSLSFSAVGEQKSFTVKVTGPKI------AQQPIMSGAIVWE 686 (734)
Q Consensus 617 ~~~~~~tv~N~~~~~~ty~~~v~~~~----g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~------~~~~~~~G~i~~~ 686 (734)
..+.++|++|+|.-+.+|++.-.... .-.++++|..-++ .+|++.+++|++.+... ....-.+--+++.
T Consensus 47 ~~~~~l~i~N~g~~pa~f~f~~~~~~~~~~~~wl~v~p~~g~l-~Pge~~~i~l~~~v~~~~~~~ln~g~~~l~diLvL~ 125 (366)
T 3qis_A 47 LQKEKFQISNNGQVPCHFSFIPKLNDSQYCKPWLRAEPFEGYL-EPNETVDISLDVYVSKDSVTILNSGEDKIEDILVLH 125 (366)
T ss_dssp CEEEEEEEEECSSSCEEEEEECCTTCSSSSCTTEEEESCEEEE-CTTCEEEEEEEECBCTTTHHHHHHTSSCSCEEEEEE
T ss_pred eEEEEEEEEecCCceEEEEEEeCCCCCCCCCCcEEEeCCccEE-CCCCEEEEEEEEEECHHHHHHHhcCccccceEEEEE
Confidence 56778899999999999999654322 2347889999999 68999999999988762 1123456667776
Q ss_pred -cCceEEEeEEEEEec
Q 044427 687 -DGVHQVRSPVVIYNI 701 (734)
Q Consensus 687 -~~~~~v~~P~~~~~~ 701 (734)
+++++..+|+-+.+-
T Consensus 126 ve~G~d~FI~v~~~~~ 141 (366)
T 3qis_A 126 LDRGKDYFLTISGNYL 141 (366)
T ss_dssp ETTSCEEEEEEEEEEC
T ss_pred EeCCCcEEEEeccccC
Confidence 677777888877754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 734 | ||||
| d1v6ca_ | 435 | c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseud | 8e-40 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 4e-16 | |
| d1r6va_ | 671 | c.41.1.1 (A:) Fervidolysin {Fervidobacterium penni | 7e-05 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 8e-12 | |
| d1gcia_ | 269 | c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: | 0.001 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 4e-11 | |
| d1r0re_ | 274 | c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carls | 6e-07 | |
| d2ixta1 | 309 | c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus | 2e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 2e-10 | |
| d1to2e_ | 281 | c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefacie | 9e-10 | |
| d1wmda2 | 318 | c.41.1.1 (A:1-318) Alkaline serine protease kp-43, | 5e-10 | |
| d1p8ja2 | 334 | c.41.1.1 (A:109-442) Furin, N-terminal domain {Mou | 2e-07 | |
| d2id4a2 | 339 | c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak | 7e-07 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 2e-06 | |
| d1dbia_ | 280 | c.41.1.1 (A:) Thermostable serine protease {Bacill | 4e-06 | |
| d2pwaa1 | 279 | c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirach | 1e-05 | |
| d1thma_ | 279 | c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgar | 7e-05 | |
| d1t1ga_ | 357 | c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bac | 0.003 |
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} Length = 435 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Score = 150 bits (378), Expect = 8e-40
Identities = 88/477 (18%), Positives = 164/477 (34%), Gaps = 76/477 (15%)
Query: 88 KLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYN 147
LS SQ G+ I ++D+G N TG N +
Sbjct: 15 VLSDSQAGNRTICIIDSGYDRSHNDLNAN-----------NVTGTNNSGTG--------- 54
Query: 148 SENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVC 207
+++ P ++ HGTH + T A A+ G+ G +PN +++ V
Sbjct: 55 --------NWYQPGNNNAHGTHVAGTIAAI----ANNEGVV-----GVMPNQNANIHIVK 97
Query: 208 WSDGCATAD---ILAAFDDAIADG-VDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILT 263
+ ++AA D + G +++++SLG + + G+L
Sbjct: 98 VFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGSTTTERNALN----THYNNGVLL 153
Query: 264 SNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISY 323
+AGN+G YS ++VAA + A + + + I+ +S
Sbjct: 154 IAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVE-----ISGPGEAILST 208
Query: 324 PLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMA 383
+ G A+ + G F ++ + + ++ S A+
Sbjct: 209 VTVGEGRLADITIGGQSY---FSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGT 265
Query: 384 DSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSR 443
++A +++ + + I + K A A ++ +S+
Sbjct: 266 SFSCGNMANKIC-------------LVERVGNQGSSYPEINSTKACKTAGAKGIIVYSNS 312
Query: 444 ---GPNPITVDILKPDITAPGVDILASW----SPVAPPSLDPEDTRSVSFNIISGTSMSC 496
G + DIT P V + + S + + + +GTSM+
Sbjct: 313 ALPGLQNPFLVDANSDITVPSVSVDRATGLALKAKLGQSTTVSNQGNQDYEYYNGTSMAT 372
Query: 497 PHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
PH SG A V + HP S S +++AL TA + + + G G IN A
Sbjct: 373 PHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR---DNQTGYGMINAVAAKA 426
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 80.1 bits (196), Expect = 4e-16
Identities = 41/226 (18%), Positives = 72/226 (31%), Gaps = 13/226 (5%)
Query: 455 PDITAPGVDILASWSPVAPPSLDPEDTRSVS-----FNIISGTSMSCPHASGSAAYVKAA 509
+ APGV IL++ + + + ++ GTSM+ PH +G A +
Sbjct: 338 VSVGAPGVTILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQK 397
Query: 510 HPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAIDPGLVYD----ATEVDY 565
PN P I+ L TA+ + + G G + A+ L +V
Sbjct: 398 FPNAKPWQIRKLLENTAFDFNG---NGWDHDTGYGLVKLDAALQGPLPTQGGVEEFQVVV 454
Query: 566 VNFLCKQGYNTTIIRQITGDNS-SVCNSTEPGRAWDLNYPSFSLAIEDGQPIYGVFTRTV 624
+ G T + + + S + G A + S + I G P +
Sbjct: 455 TDAKGNFGVPTVFVSMMRDNGSCYYAKTGPDGIARFPHIDSGTYDIFVGGPDHWDRALAP 514
Query: 625 TNVGSPNSTYTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTG 670
+ S Y + M +S A +F +
Sbjct: 515 YDGESIPGGYAIALRMAEERQASFVGFGVSPDATQLNVNFNSTLQV 560
|
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} Length = 671 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Score = 43.5 bits (101), Expect = 7e-05
Identities = 30/231 (12%), Positives = 63/231 (27%), Gaps = 49/231 (21%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
+I+ ++DTG+ + + G + E+
Sbjct: 156 IIVAVVDTGVDGTHPDLEGQ-----------VIAGYRPAFDE--------------ELPA 190
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATAD 216
GTH + T A ++ G P A+I + +
Sbjct: 191 GTDSSYGGSAGTHVAGTIAAKKDG---------KGIVGVAPGAKIMPIVIFDDPALVGGN 241
Query: 217 -------ILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGN 269
+ A A G +++ S G ++ + ++ ++ N
Sbjct: 242 GYVGDDYVAAGIIWATDHGAKVMNHSWGGWGYSYTMKEAF---DYAMEHGVVMVVSAGNN 298
Query: 270 SGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNG-----ITYPGLSINS 315
+ + P + VAA A + + PG++I S
Sbjct: 299 TSDSHHQYPAGYPGVIQVAALDYYGGTFRVAGFSSRSDGVSVGAPGVTILS 349
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 64.2 bits (155), Expect = 8e-12
Identities = 46/237 (19%), Positives = 85/237 (35%), Gaps = 9/237 (3%)
Query: 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVN 376
DLN G+ + + A NS V V + L +L +
Sbjct: 40 DLNIRGGASFVPGEPSTQDGNGHGTHVAGTIAALNNSIGV--LGVAPSAELYAVKVLGAS 97
Query: 377 GLGTIMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPK 436
G G++ + + + A + + +S + ++ + +
Sbjct: 98 GSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAVNSATSRGVLVVAASGNSGAG 157
Query: 437 VVSFSSRGPNPITVDILKPDITAPGVDILASWSPV-APPSLDPEDTRSVSFNIISGTSMS 495
+S+ +R N + V + + + AP ++ ++GTSM+
Sbjct: 158 SISYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMA 217
Query: 496 CPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAI 552
PH +G+AA VK +P+WS I++ L TA + S YGSG +N A
Sbjct: 218 TPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGSTNL------YGSGLVNAEAAT 268
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} Length = 269 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Score = 39.1 bits (90), Expect = 0.001
Identities = 53/245 (21%), Positives = 82/245 (33%), Gaps = 49/245 (20%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V + +LDTGI N +G GA+F
Sbjct: 26 VKVAVLDTGISTHPD-LNIRG-------------GASFVPGEP----------------- 54
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATA- 215
S +D GHGTH + T A P+A + KV + G +
Sbjct: 55 --STQDGNGHGTHVAGTIAALNNSIGVLGV---------APSAELYAVKVLGASGSGSVS 103
Query: 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY 275
I + A +G+ + ++SLGS P E + A G+L ++GNSG
Sbjct: 104 SIAQGLEWAGNNGMHVANLSLGSPSPSATLEQAV----NSATSRGVLVVAASGNSGAGSI 159
Query: 276 SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPG-LSINSFDLNGISYPLIWGGD-AAN 333
S + V A+ + + + G G+ G +Y + G A
Sbjct: 160 SYPARYANAMAVGATDQNNNRASFSQYGAGLDIVAPGVNVQSTYPGSTYASLNGTSMATP 219
Query: 334 YSAGA 338
+ AGA
Sbjct: 220 HVAGA 224
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 61.9 bits (149), Expect = 4e-11
Identities = 46/248 (18%), Positives = 88/248 (35%), Gaps = 13/248 (5%)
Query: 310 GLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDG 369
G+ + DLN + G+A N N A V L
Sbjct: 34 GIQASHPDLNVVGGASFVAGEAYNTDG--NGHGTHVAGTVAALDNTTGVLGVAPSVSLYA 91
Query: 370 SDILAVNGLGT----IMADSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMF 425
+L +G G+ + T + + + + + +
Sbjct: 92 VKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGGASGSTAMKQAVDNAYARGVVVVAA 151
Query: 426 GETWKDAMAPKVVSFSSRGPNPITVDILKPDIT-APGVDILASWSPVAPPSLDPEDTRSV 484
++ + + + ++ + I V + + A + A +AP + +
Sbjct: 152 AGNSGNSGSTNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTN 211
Query: 485 SFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSG 544
++ ++GTSM+ PH +G+AA + + HPN S S +++ L +TA + S F YG G
Sbjct: 212 TYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKG 265
Query: 545 HINPAQAI 552
IN A
Sbjct: 266 LINVEAAA 273
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} Length = 274 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Score = 49.2 bits (116), Expect = 6e-07
Identities = 50/272 (18%), Positives = 86/272 (31%), Gaps = 54/272 (19%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V + +LDTGI N G GA+F
Sbjct: 26 VKVAVLDTGIQASHPDLNVVG-------------GASFVAGE------------------ 54
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCAT-A 215
D GHGTH G P+ + KV S G + +
Sbjct: 55 -AYNTDGNGHGTHV---------AGTVAALDNTTGVLGVAPSVSLYAVKVLNSSGSGSYS 104
Query: 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY 275
I++ + A +G+D+I++ + +A G++ +AGNSG
Sbjct: 105 GIVSGIEWATTNGMDVINM----SLGGASGSTAMKQAVDNAYARGVVVVAAAGNSGNSGS 160
Query: 276 SVSNFAPW----TLTVAASSIDRKFVAQAVLGNG--ITYPGLSINSFDLNGISYPLIWGG 329
+ + P + V A + + + +G + PG + S L
Sbjct: 161 TNTIGYPAKYDSVIAVGAVDSNSNRASFSSVGAELEVMAPGAGVYSTYPTNTYATLNGTS 220
Query: 330 DAANYSAGANPDIARFCAADALNSYKVEGKIV 361
A+ + AGA I L++ +V ++
Sbjct: 221 MASPHVAGAAALI--LSKHPNLSASQVRNRLS 250
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} Length = 309 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Score = 60.7 bits (145), Expect = 2e-10
Identities = 29/128 (22%), Positives = 50/128 (39%), Gaps = 17/128 (13%)
Query: 424 MFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRS 483
+ +A + +I+APG + ++W +
Sbjct: 194 NVQQNGTYRVADYSSRGYISTAGDYVIQEGDIEISAPGSSVYSTWY-------------N 240
Query: 484 VSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDL----EF 539
+N ISGTSM+ PH SG AA + A +P+ S + ++S L A +D + ++
Sbjct: 241 GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDY 300
Query: 540 AYGSGHIN 547
A G G
Sbjct: 301 ASGFGFAR 308
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 59.9 bits (144), Expect = 2e-10
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 438 VSFSSRGPNPITV-DILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSC 496
V + + P+ I V + + A + +AP + +GTSM+
Sbjct: 165 VGYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMAS 224
Query: 497 PHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
PH +G+AA + + HPNW+ + ++S+L T + F YG G IN A
Sbjct: 225 PHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQ 275
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Score = 58.0 bits (139), Expect = 9e-10
Identities = 43/245 (17%), Positives = 77/245 (31%), Gaps = 43/245 (17%)
Query: 97 VIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTD 156
V + ++D+GI G GA+ + +
Sbjct: 26 VKVAVIDSGIDSSHPDLKVAG-------------GASMVPS------------------E 54
Query: 157 FHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATA 215
+ +D+ HGTH V G P+A + KV +DG +
Sbjct: 55 TNPFQDNNSHGTH---------VAGTVAALNNSIGVLGVAPSASLYAVKVLGADGSGQYS 105
Query: 216 DILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY 275
I+ + AIA+ +D+I++SLG + + + N +
Sbjct: 106 WIINGIEWAIANNMDVINMSLGGPSGSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTV 165
Query: 276 SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITY--PGLSINSFDLNGISYPLIWGGDAAN 333
P + V A + + + +G + PG+SI S A+
Sbjct: 166 GYPGKYPSVIAVGAVDSSNQRASFSSVGPELDVMAPGVSIQSTLPGNKYGAYNGTSMASP 225
Query: 334 YSAGA 338
+ AGA
Sbjct: 226 HVAGA 230
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} Length = 318 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Score = 59.5 bits (142), Expect = 5e-10
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 9/114 (7%)
Query: 445 PNPITVDILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAA 504
P +KPD+ APG IL++ S +AP S + + GTSM+ P +G+ A
Sbjct: 208 RGPTKDGRIKPDVMAPGTFILSARSSLAPDS-SFWANHDSKYAYMGGTSMATPIVAGNVA 266
Query: 505 YVKAAHP-----NWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553
++ PS +K+AL+ A G G + ++++
Sbjct: 267 QLREHFVKNRGITPKPSLLKAALIAGA---ADIGLGYPNGNQGWGRVTLDKSLN 317
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 334 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 51.7 bits (122), Expect = 2e-07
Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 8/72 (11%)
Query: 490 SGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE--------DLEFAY 541
+GTS S P A+G A A+ N + ++ ++ T+ + + +Y
Sbjct: 257 TGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVGRKVSHSY 316
Query: 542 GSGHINPAQAID 553
G G ++ +
Sbjct: 317 GYGLLDAGAMVA 328
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 49.8 bits (117), Expect = 7e-07
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 9/77 (11%)
Query: 486 FNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLE------- 538
N GTS + P A+G + A+PN + ++ + +A ++ D
Sbjct: 257 SNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKK 316
Query: 539 --FAYGSGHINPAQAID 553
YG G I+ + I+
Sbjct: 317 YSHRYGFGKIDAHKLIE 333
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 48.0 bits (113), Expect = 2e-06
Identities = 56/270 (20%), Positives = 90/270 (33%), Gaps = 54/270 (20%)
Query: 72 KIHTTRSWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTG 131
+T +WD S G I ++DTG+ + K + G
Sbjct: 17 NTYTDYAWDVTKGSSG---------QEIAVIDTGVDYTHPDLDGK-----------VIKG 56
Query: 132 ANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGT 191
+F N+ + P D HGTH + AA G+A
Sbjct: 57 YDFVDND-------------------YDPMDLNNHGTHVAGIAAAETNNATGIAGMA--- 94
Query: 192 ARGGVPNARISMYKVCWSDGCAT-ADILAAFDDAIADGVDIISVSLGSDFPFEYFEDPIA 250
PN RI + +G T +DI A A G ++I++SLG D E+ +
Sbjct: 95 -----PNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCHTTTLENAV- 148
Query: 251 IGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITY-- 308
+A G + +AGN+G + V A + + + G +
Sbjct: 149 ---NYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVA 205
Query: 309 PGLSINSFDLNGISYPLIWGGDAANYSAGA 338
PG+ I S + A+ + AG
Sbjct: 206 PGVDIVSTITGNRYAYMSGTSMASPHVAGL 235
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Score = 46.9 bits (110), Expect = 4e-06
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 8/127 (6%)
Query: 428 TWKDAMAPKVVSFSSRGPNPITVD-ILKPDITAPGVDILASWSPVAPPSLDPEDTRSVSF 486
+ N I V + + D A + VAP +
Sbjct: 160 AAAGNNGSSTTFEPASYENVIAVGAVDQYDRLASFSNYGTWVDVVAPGVDIVSTITGNRY 219
Query: 487 NIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHI 546
+SGTSM+ PH +G AA + + I+ A+ TA + + G I
Sbjct: 220 AYMSGTSMASPHVAGLAALLA--SQGRNNIEIRQAIEQTADKISGTGTY-----FKYGRI 272
Query: 547 NPAQAID 553
N A+
Sbjct: 273 NSYNAVT 279
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Score = 45.5 bits (106), Expect = 1e-05
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 485 SFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTA 526
S ISGTSM+ PH +G AAY+ + S+ + + TA
Sbjct: 216 STRSISGTSMATPHVAGLAAYLMTLGKTTAASACR-YIADTA 256
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} Length = 279 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Score = 42.8 bits (99), Expect = 7e-05
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 485 SFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSG 544
++ +SGTSM+ PH +G A + A S S+I++A+ TA K + G
Sbjct: 217 TYASLSGTSMATPHVAGVAGLL--ASQGRSASNIRAAIENTA-----DKISGTGTYWAKG 269
Query: 545 HINPAQAID 553
+N +A+
Sbjct: 270 RVNAYKAVQ 278
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} Length = 357 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Score = 38.2 bits (87), Expect = 0.003
Identities = 25/184 (13%), Positives = 45/184 (24%), Gaps = 7/184 (3%)
Query: 158 HSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADI 217
+G + G + +A A P A+I++Y +D I
Sbjct: 56 VVSVSVDGATNQPTGDPNGPDGEVELDIEVAGALA----PGAKIAVYFAPNTDAGFLNAI 111
Query: 218 LAAFDDAIADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSV 277
A D I+S+S G A+ + + A
Sbjct: 112 TTAVHDP-THKPSIVSISWGGPEDSWAPASIAAMNRAFLDAAALGVTVLAAAGDSGSTDG 170
Query: 278 SNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLNGISYPLIWGGDAANYSAG 337
+ + A+S L D G GG + +
Sbjct: 171 EQDGLYHVDFPAASPYVLACGGTRLVASAGRIERETVWND--GPDGGSTGGGVSRIFPLP 228
Query: 338 ANPD 341
+ +
Sbjct: 229 SWQE 232
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 734 | |||
| d1r6va_ | 671 | Fervidolysin {Fervidobacterium pennivorans [TaxId: | 100.0 | |
| d1dbia_ | 280 | Thermostable serine protease {Bacillus sp., AK.1 [ | 100.0 | |
| d1v6ca_ | 435 | Alkaline serine protease Apa1 {Pseudoalteromonas s | 100.0 | |
| d1r0re_ | 274 | Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1 | 100.0 | |
| d1thma_ | 279 | Thermitase {Thermoactinomyces vulgaris [TaxId: 202 | 100.0 | |
| d1to2e_ | 281 | Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' | 100.0 | |
| d1gcia_ | 269 | Subtilisin {Bacillus lentus [TaxId: 1467]} | 100.0 | |
| d2ixta1 | 309 | Sphericase {Bacillus sphaericus [TaxId: 1421]} | 100.0 | |
| d1wmda2 | 318 | Alkaline serine protease kp-43, N-terminal domain | 100.0 | |
| d2pwaa1 | 279 | Proteinase K {Fungus (Tritirachium album), strain | 100.0 | |
| d1p8ja2 | 334 | Furin, N-terminal domain {Mouse (Mus musculus) [Ta | 100.0 | |
| d2id4a2 | 339 | Kexin, N-terminal domain {Baker's yeast (Saccharom | 100.0 | |
| d1t1ga_ | 357 | Serine-carboxyl proteinase, SCP {Bacillus novosp. | 99.95 | |
| d1ga6a_ | 369 | Serine-carboxyl proteinase, SCP {Pseudomonas sp., | 99.94 | |
| d1scjb_ | 71 | Subtilisin prosegment {Bacillus subtilis [TaxId: 1 | 97.83 | |
| d1v5ib1 | 72 | Proteinase A inhibitor 1, POIA1 {Oyster mushroom ( | 97.32 | |
| d1w8oa1 | 103 | Sialidase, "linker" domain {Micromonospora viridif | 96.75 | |
| d1de4c2 | 193 | Transferrin receptor ectodomain, apical domain {Hu | 85.3 |
| >d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Fervidolysin species: Fervidobacterium pennivorans [TaxId: 93466]
Probab=100.00 E-value=1.1e-50 Score=472.06 Aligned_cols=340 Identities=21% Similarity=0.265 Sum_probs=254.4
Q ss_pred CcceEEEecceeeEEEEEeCHHH----HHH--HhcCCCeeEEEeCcccccccC---------------------------
Q 044427 30 KESLVYSYGRSFNGFAAKLTDEE----VAR--FSETEGVISVIPNHKLKIHTT--------------------------- 76 (734)
Q Consensus 30 ~~~v~~~y~~~~ng~s~~~~~~~----i~~--L~~~p~V~~v~~~~~~~~~~~--------------------------- 76 (734)
..++++++ ..++.+.++++... .+. +..+|+|++|+|+...++...
T Consensus 52 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~vep~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (671)
T d1r6va_ 52 NGKVVLEL-PQIKVVSIKLNGMTVKQAYDKIKALALKGIRYVEPSYKRELIKPTVVKPNPDMYKIRKPGLNSTARDYGEE 130 (671)
T ss_dssp TCEEEEEE-GGGTEEEEECSSCCHHHHHHHHTTSCCSSEEEEECCBCCEECCCEECCCCTTTTCSSSSCCSSSTTCCSST
T ss_pred CCEEEEEe-cccceEEEEcCchhHHHHHHHHHHhcCCCceEECcceeEeeccccccCCCccccccccccccccccCcCcc
Confidence 45677777 45778888876432 222 345899999999865443210
Q ss_pred ---CCccc--cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCc
Q 044427 77 ---RSWDF--MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENI 151 (734)
Q Consensus 77 ---~s~~~--~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~ 151 (734)
..|.+ +++++.|....+|+||+|||||||||++||+|.+. ++..+++..+..
T Consensus 131 ~~~~~w~l~~i~~~~a~~~~~tG~gV~VaViDtGvd~~Hpdl~~~-----------------------~~~~~~~~~~~~ 187 (671)
T d1r6va_ 131 LSNELWGLEAIGVTQQLWEEASGTNIIVAVVDTGVDGTHPDLEGQ-----------------------VIAGYRPAFDEE 187 (671)
T ss_dssp TGGGCHHHHHTTCCHHHHHHCSCTTCEEEEEESCCBTTSGGGTTT-----------------------BCCEEEGGGTEE
T ss_pred ccccCcChhhcCccHHHHhcCCCCCCEEEEEcCCcCCCChhhcCC-----------------------cccCccccccCC
Confidence 01111 33333444567999999999999999999999743 222233332211
Q ss_pred cccCCCCCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecC------CC-CCHHHHHHHHHHH
Q 044427 152 YEVTDFHSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWS------DG-CATADILAAFDDA 224 (734)
Q Consensus 152 ~~~~~~~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~------~g-~~~~~i~~ai~~a 224 (734)
. ....++.|..||||||||||||+... .| +.||||+|+|+++|++++ .+ ....++++||+||
T Consensus 188 ~--~~~~~~~d~~gHGT~VAGiiaa~~~~----~g-----~~GvAp~a~l~~~rv~~~~~~~~~~g~~~~~~i~~ai~~a 256 (671)
T d1r6va_ 188 L--PAGTDSSYGGSAGTHVAGTIAAKKDG----KG-----IVGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWA 256 (671)
T ss_dssp E--CTTCBCCTTCSHHHHHHHHHHCCCSS----SS-----CCCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHH
T ss_pred C--CCCCcCcccCCCCccccceeeeeccc----cc-----eeeecCcceEEEEEecccccccCCCCcccHHHHHHHHHHH
Confidence 1 11134567889999999999997532 12 389999999999999975 23 5677899999999
Q ss_pred HhCCCcEEEEccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCC-CCcCCCCCceEEecccccCceeEEEEEeC
Q 044427 225 IADGVDIISVSLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDP-YSVSNFAPWTLTVAASSIDRKFVAQAVLG 303 (734)
Q Consensus 225 i~~g~dVINlSlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~-~~~~~~ap~vitVga~~~~~~~~~~~~~~ 303 (734)
+++|++|||||||+.. ....+..++..+.++|+++|+||||++... ...+...|++|+|||++...
T Consensus 257 ~~~g~~Vin~S~g~~~----~~~~~~~ai~~a~~~gv~vV~aAGN~~~~~~~~~Pa~~~~vi~Vga~~~~~--------- 323 (671)
T d1r6va_ 257 TDHGAKVMNHSWGGWG----YSYTMKEAFDYAMEHGVVMVVSAGNNTSDSHHQYPAGYPGVIQVAALDYYG--------- 323 (671)
T ss_dssp HHTTCSEEEECEEBSC----CCHHHHHHHHHHHHTTCEEEEECCSCSSSCCCCBTTTSTTCEEEEEEEEET---------
T ss_pred HhCCCcEEeccccccc----CChHHHHHHHHHHhccCcEEEEEecCCCCccccCCccCCceEEEEEecCCC---------
Confidence 9999999999999872 345677788889999999999999998754 35566789999999864320
Q ss_pred CCeEeeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEe
Q 044427 304 NGITYPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMA 383 (734)
Q Consensus 304 ~g~~~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~ 383 (734)
T Consensus 324 -------------------------------------------------------------------------------- 323 (671)
T d1r6va_ 324 -------------------------------------------------------------------------------- 323 (671)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCccCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCC
Q 044427 384 DSVFTDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVD 463 (734)
Q Consensus 384 n~~~~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~ 463 (734)
....++.||+|||.. ||+|||++
T Consensus 324 -------------------------------------------------~~~~~a~fS~~g~~~--------dv~APG~~ 346 (671)
T d1r6va_ 324 -------------------------------------------------GTFRVAGFSSRSDGV--------SVGAPGVT 346 (671)
T ss_dssp -------------------------------------------------TEEEECSSSCCCTTE--------EEEEECSS
T ss_pred -------------------------------------------------CcceeeeccCCCCCc--------eEEecCCC
Confidence 001578999999976 99999999
Q ss_pred EeeccCCCCCCCC-----CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCC
Q 044427 464 ILASWSPVAPPSL-----DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLE 538 (734)
Q Consensus 464 I~sa~~~~~~~~~-----~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~ 538 (734)
|+++++....... .......+.|..++|||||||||||++|||+|++|+|++.+||++|++||++++..+. +
T Consensus 347 i~st~~~~~~~~~~~~~~~~~~~~~~~y~~~sGTS~AaP~VaG~aALl~~~~p~lt~~~v~~~L~~tA~~~~~~g~---~ 423 (671)
T d1r6va_ 347 ILSTVPGEDSIGYEGHNENVPATNGGTYDYYQGTSMAAPHVTGVVAVLLQKFPNAKPWQIRKLLENTAFDFNGNGW---D 423 (671)
T ss_dssp EEEECCCTTSTTCCCCCTTCCCSSSCCEEEEESHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCSSSSSC---B
T ss_pred eEeecCCCCccccccccccccccCCCeeeeecCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCC---C
Confidence 9999875322111 1112234789999999999999999999999999999999999999999999877654 7
Q ss_pred CCCCCCccCccccCCCcee
Q 044427 539 FAYGSGHINPAQAIDPGLV 557 (734)
Q Consensus 539 ~~~G~G~vn~~~Al~~~lv 557 (734)
..||||+||+.+||+..+.
T Consensus 424 ~~~G~G~vna~~Av~~~~~ 442 (671)
T d1r6va_ 424 HDTGYGLVKLDAALQGPLP 442 (671)
T ss_dssp TTTBTCBCCHHHHHHCCCC
T ss_pred CCcccChhCHHHHhhCcCC
Confidence 8999999999999986544
|
| >d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermostable serine protease species: Bacillus sp., AK.1 [TaxId: 1409]
Probab=100.00 E-value=1.6e-48 Score=408.27 Aligned_cols=265 Identities=25% Similarity=0.309 Sum_probs=217.3
Q ss_pred CccccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCC
Q 044427 78 SWDFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDF 157 (734)
Q Consensus 78 s~~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~ 157 (734)
..+.++++.+|..+++|+||+|||||||||++||+|.+ +++..++|....
T Consensus 14 ~l~~i~~~~aw~~~~~G~gv~VaviDsGi~~~h~~l~~-----------------------~~~~~~~~~~~~------- 63 (280)
T d1dbia_ 14 GPQNTYTDYAWDVTKGSSGQEIAVIDTGVDYTHPDLDG-----------------------KVIKGYDFVDND------- 63 (280)
T ss_dssp TTGGGTHHHHTTTCCCCTTCEEEEEESCCCTTSTTTTT-----------------------TEEEEEETTTTB-------
T ss_pred ChhhCCHHHHHhccCCCCCeEEEEEccCcCCCChhhcC-----------------------CeeecccccCCC-------
Confidence 34557777799999999999999999999999999963 255556665442
Q ss_pred CCCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEcc
Q 044427 158 HSPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSL 236 (734)
Q Consensus 158 ~~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSl 236 (734)
..+.|..+|||||||+|+|.... .+.+.||||+|+|+.+|+++..+ +...++++||+|++++|++||||||
T Consensus 64 ~~~~d~~~HGT~vag~i~~~~~~--------~~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~ 135 (280)
T d1dbia_ 64 YDPMDLNNHGTHVAGIAAAETNN--------ATGIAGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSL 135 (280)
T ss_dssp SCCCCSSSHHHHHHHHHHCCCSS--------SSSCCCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred CccccccccccceeEeeeccccC--------CCceeEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeeccc
Confidence 45678899999999999987643 22348999999999999998765 7889999999999999999999999
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccC
Q 044427 237 GSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSF 316 (734)
Q Consensus 237 G~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~ 316 (734)
|... ..+....+...+.++|+++|+||||+|......+...+++|+|||.+.+
T Consensus 136 g~~~----~~~~~~~a~~~a~~~gilvv~aaGn~g~~~~~~Pa~~~~vi~Vga~~~~----------------------- 188 (280)
T d1dbia_ 136 GCDC----HTTTLENAVNYAWNKGSVVVAAAGNNGSSTTFEPASYENVIAVGAVDQY----------------------- 188 (280)
T ss_dssp SSCC----CCHHHHHHHHHHHHTTCEEEEECCBC---------CCTTSEEEEEECTT-----------------------
T ss_pred cccc----cchhHHHHHHHHHHCCEEEEEecCccCCCCccCCCCCCCEEEEeeecCC-----------------------
Confidence 9873 2345566777889999999999999998776777778899999885422
Q ss_pred CCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCc
Q 044427 317 DLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPL 396 (734)
Q Consensus 317 ~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~ 396 (734)
T Consensus 189 -------------------------------------------------------------------------------- 188 (280)
T d1dbia_ 189 -------------------------------------------------------------------------------- 188 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCC
Q 044427 397 PATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSL 476 (734)
Q Consensus 397 p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~ 476 (734)
+.++.||++||.. |++|||.+|++....
T Consensus 189 --------------------------------------~~~a~~S~~g~~~--------d~~apg~~i~~~~~~------ 216 (280)
T d1dbia_ 189 --------------------------------------DRLASFSNYGTWV--------DVVAPGVDIVSTITG------ 216 (280)
T ss_dssp --------------------------------------SCBCTTBCCSTTC--------CEEEECSSEEEEETT------
T ss_pred --------------------------------------CCcCCcCCCCCcc--------cccCCccceeccccC------
Confidence 3678999999875 999999999999876
Q ss_pred CCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 477 DPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 477 ~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
..|..++|||||||+|||++|||+|. .+++.+||++|++||+++... +..||||+||+.+||+
T Consensus 217 -------~~~~~~sGTS~AaP~vaG~~All~~~--~~t~~~v~~~L~~tA~~~~~~-----~~~~G~G~ln~~~Al~ 279 (280)
T d1dbia_ 217 -------NRYAYMSGTSMASPHVAGLAALLASQ--GRNNIEIRQAIEQTADKISGT-----GTYFKYGRINSYNAVT 279 (280)
T ss_dssp -------TEEEEECSHHHHHHHHHHHHHHHHHT--TCCHHHHHHHHHHTSBCCTTB-----TTTBSSEECCHHHHHT
T ss_pred -------cceeccCCccccchHHHHHHHHHhCC--CcCHHHHHHHHHHhCcCCCCC-----CCcCCCCeEcHHHHcC
Confidence 78999999999999999999999995 558999999999999987654 6789999999999985
|
| >d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease Apa1 species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]
Probab=100.00 E-value=1.4e-48 Score=434.38 Aligned_cols=406 Identities=22% Similarity=0.233 Sum_probs=234.8
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
++.+..|. .+|+||+|||||||||++||+|.+. ++..+++.... +...+.
T Consensus 11 i~a~~~~~--~~G~gv~VaviDtGid~~Hp~~~~~-----------------------~~~~~~~~~~~-----~~~~~~ 60 (435)
T d1v6ca_ 11 VGATVLSD--SQAGNRTICIIDSGYDRSHNDLNAN-----------------------NVTGTNNSGTG-----NWYQPG 60 (435)
T ss_dssp TTGGGSCC--TTGGGCEEEEEESCCCTTSTTTTTS-----------------------EEEECCCTTSC-----CTTCCC
T ss_pred cCcchhhh--cCCCCcEEEEEcCCCCCCChhhccC-----------------------eeeeeccCCCC-----CCCCCC
Confidence 44443443 5899999999999999999999743 33334443321 224577
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecC--CCeEEEEEEecCCC-CCHHHHHHHHHHHHh-CCCcEEEEccC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVP--NARISMYKVCWSDG-CATADILAAFDDAIA-DGVDIISVSLG 237 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP--~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~-~g~dVINlSlG 237 (734)
|++||||||||||||+... .| +.|||| +++|+.+|++.... +...++++||+++++ .+++|||+|||
T Consensus 61 d~~gHGThvAgiiag~~~~----~g-----~~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g 131 (435)
T d1v6ca_ 61 NNNAHGTHVAGTIAAIANN----EG-----VVGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLG 131 (435)
T ss_dssp SSCCHHHHHHHHHHCCCSS----SB-----CCCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCC
T ss_pred CCCCcHHHHHHHHhccCCC----Cc-----eEEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccC
Confidence 8999999999999998632 12 389999 89999999988764 667789999999996 59999999999
Q ss_pred CCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEe--eeeeccc
Q 044427 238 SDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITY--PGLSINS 315 (734)
Q Consensus 238 ~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~--~g~~~~~ 315 (734)
... ....+..++..+.++|+++|+||||+|....+.++.++++|+||+++.+.........+....+ .|..+..
T Consensus 132 ~~~----~~~~~~~a~~~~~~~g~~~v~aaGN~g~~~~~~p~~~~~vi~Vga~~~~~~~~~~s~~g~~vdv~apG~~i~s 207 (435)
T d1v6ca_ 132 GSG----STTTERNALNTHYNNGVLLIAAAGNAGDSSYSYPASYDSVMSVAAVDSNLDHAAFSQYTDQVEISGPGEAILS 207 (435)
T ss_dssp BSC----CBHHHHHHHHHHHHTTCEEEEECCSSSSSBCCBTTTSTTEEEEEEECTTCCBCTTSCCCSSEEEEEECSSEEE
T ss_pred CCC----CCHHHHhhhhhccccceEEEEeccCCCCCCcccCccCCCceEEEEecCCCCcccccCCCCceEEeecccceee
Confidence 873 2345667778889999999999999999888888889999999998765332111111111000 0111000
Q ss_pred CCC-CCceee-eEEcCCCcccC--CCCCcccccccccc-cCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCc
Q 044427 316 FDL-NGISYP-LIWGGDAANYS--AGANPDIARFCAAD-ALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDL 390 (734)
Q Consensus 316 ~~~-~~~~~p-l~~~~~~~~~~--~~~~~~~~~~c~~~-~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~ 390 (734)
... ....+. ........... ..........|... ........+.+..|............... +.+.......
T Consensus 208 t~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~- 285 (435)
T d1v6ca_ 208 TVTVGEGRLADITIGGQSYFSNGVVPHNRLTPSGTSYAPAPINASATGALAECTVNGTSFSCGNMANK-ICLVERVGNQ- 285 (435)
T ss_dssp ECSTTCEEEEEEEETTEECGGGCCEECEEEEECSSSEEECCCCCEEEEEEEEEEEETTEEECCCCTTE-EEEEECCSCS-
T ss_pred eeecCCCcccccccCCceeeccccccccccccccccccccceeccccceEEEEecCCceeeccccccc-cceeeccCCc-
Confidence 000 000000 00000000000 00000000001000 00011122223222221110000000000 0000000000
Q ss_pred ccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCC--CCCCCCcEEecCCCEeecc
Q 044427 391 AFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPIT--VDILKPDITAPGVDILASW 468 (734)
Q Consensus 391 ~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~--~~~~KPDI~APG~~I~sa~ 468 (734)
.... ............. ....+..+++.+|.... ....||||.+||..|.++.
T Consensus 286 --~~~~-------~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~di~aPg~~i~~a~ 340 (435)
T d1v6ca_ 286 --GSSY-------PEINSTKACKTAG----------------AKGIIVYSNSALPGLQNPFLVDANSDITVPSVSVDRAT 340 (435)
T ss_dssp --SSSC-------THHHHHHHHHHTT----------------CSEEEEECCSSSCSCCCCEEECTTCCCCSCEEEECHHH
T ss_pred --cccc-------eeeeeceeecccC----------------CcceEEeccCCCCCcCCccccccCCceEEEEEEecccc
Confidence 0000 0000011111111 11233444455554321 3457999999998887543
Q ss_pred CCCC----CCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCC
Q 044427 469 SPVA----PPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSG 544 (734)
Q Consensus 469 ~~~~----~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G 544 (734)
.... .............|..|||||||||||||++|||+|++|+|++++||++||+||++++..+. +++||+|
T Consensus 341 g~~~~~~~~~~~~~~~~~~~~y~~~sGTSMAaP~VAG~aALl~q~~P~~s~~~vk~~L~~TA~~~~~~~~---~~~~G~G 417 (435)
T d1v6ca_ 341 GLALKAKLGQSTTVSNQGNQDYEYYNGTSMATPHVSGVATLVWSYHPECSASQVRAALNATADDLSVAGR---DNQTGYG 417 (435)
T ss_dssp HHHHGGGTTSEEEEEEEEEESEEEECSHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHSBCCSSSSC---BTTTBTC
T ss_pred ccccccccCCcceecCCCCCCeeEEccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCcccCCCCC---CCCcccc
Confidence 1100 00000001113679999999999999999999999999999999999999999998865543 8899999
Q ss_pred ccCccccCCCceeccCCchhhhhhhhc
Q 044427 545 HINPAQAIDPGLVYDATEVDYVNFLCK 571 (734)
Q Consensus 545 ~vn~~~Al~~~lv~~~~~~d~~~~l~~ 571 (734)
+||+.+|+ +||...|.
T Consensus 418 ~vn~~~A~-----------~~l~~~~~ 433 (435)
T d1v6ca_ 418 MINAVAAK-----------AYLDESCT 433 (435)
T ss_dssp BCCHHHHH-----------HHHHHCTT
T ss_pred eecHHHHH-----------HHHHhcCC
Confidence 99999995 47776665
|
| >d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus subtilis, carlsberg [TaxId: 1423]
Probab=100.00 E-value=3.5e-48 Score=404.56 Aligned_cols=261 Identities=28% Similarity=0.431 Sum_probs=218.9
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
++++++..|..+++|+||+|||||||||++||+|+ +...++|..+. ..
T Consensus 9 ~~i~~~~~~~~g~tG~gv~VaViDtGv~~~Hp~l~-------------------------~~~~~~~~~~~-------~~ 56 (274)
T d1r0re_ 9 PLIKADKVQAQGFKGANVKVAVLDTGIQASHPDLN-------------------------VVGGASFVAGE-------AY 56 (274)
T ss_dssp HHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECSTTC-------CT
T ss_pred hhcChHHHHHcCCCCCCeEEEEECCCCCCCChhhc-------------------------ccCCccccCCC-------CC
Confidence 55677778888999999999999999999999994 34455665543 34
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGS 238 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~ 238 (734)
+.|..+|||||||||++..... .+.|+||+|+|+.+|+++..+ ...++++++++++.+++++|+|+|||.
T Consensus 57 ~~d~~gHGT~vAgii~~~~~~~---------~~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~~~~i~n~S~~~ 127 (274)
T d1r0re_ 57 NTDGNGHGTHVAGTVAALDNTT---------GVLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWATTNGMDVINMSLGG 127 (274)
T ss_dssp TCCSSSHHHHHHHHHHCCSSSS---------BCCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEB
T ss_pred CCCccccccccccccccccccc---------cccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCceecccccc
Confidence 5678899999999999876321 238999999999999998776 678899999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC----CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecc
Q 044427 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY----SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSIN 314 (734)
Q Consensus 239 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 314 (734)
.. ..........++.++++++|+||||+|.... ..+...+++|+|||.+.+
T Consensus 128 ~~----~~~~~~~~~~~a~~~~~l~V~aaGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------- 182 (274)
T d1r0re_ 128 AS----GSTAMKQAVDNAYARGVVVVAAAGNSGNSGSTNTIGYPAKYDSVIAVGAVDSN--------------------- 182 (274)
T ss_dssp SS----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTCCCCCBTTTSTTSEEEEEECTT---------------------
T ss_pred cc----chhhhhHHHHHHhhCceEEEeeccCCCCCCCcccccccccCCCEEEEEeECCC---------------------
Confidence 73 2344556667888999999999999986543 234456788888875422
Q ss_pred cCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCc
Q 044427 315 SFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSY 394 (734)
Q Consensus 315 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 394 (734)
T Consensus 183 -------------------------------------------------------------------------------- 182 (274)
T d1r0re_ 183 -------------------------------------------------------------------------------- 182 (274)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCC
Q 044427 395 PLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPP 474 (734)
Q Consensus 395 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 474 (734)
+.++.||++||. |||+|||++|+++.+.
T Consensus 183 ----------------------------------------~~~~~~s~~g~~--------~di~APG~~i~~~~~~---- 210 (274)
T d1r0re_ 183 ----------------------------------------SNRASFSSVGAE--------LEVMAPGAGVYSTYPT---- 210 (274)
T ss_dssp ----------------------------------------SCBCTTCCCSTT--------EEEEEECSSEEEEETT----
T ss_pred ----------------------------------------CCcccccCCCCC--------EEEEecCCCcccccCC----
Confidence 367889999985 5999999999999876
Q ss_pred CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 475 SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 475 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||+|||++|||+|++|+|++.+||++|++||+++.. +..||+|+||+.+|++
T Consensus 211 ---------~~~~~~sGTS~AaP~VaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ln~~~A~~ 274 (274)
T d1r0re_ 211 ---------NTYATLNGTSMASPHVAGAAALILSKHPNLSASQVRNRLSSTATYLGS------SFYYGKGLINVEAAAQ 274 (274)
T ss_dssp ---------TEEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHTCBCCSC------HHHHTTCBCCHHHHTC
T ss_pred ---------CCeEeecCCchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCceEcCeecHHHhcC
Confidence 789999999999999999999999999999999999999999988753 6789999999999986
|
| >d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Thermitase species: Thermoactinomyces vulgaris [TaxId: 2026]
Probab=100.00 E-value=1e-47 Score=402.06 Aligned_cols=262 Identities=24% Similarity=0.367 Sum_probs=223.2
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
+.++++++|..+ +|+||+|+|||||||++||+|.+ +++..++|.++. ..
T Consensus 16 ~~i~a~~aw~~~-tG~Gv~VaViDsGi~~~H~~~~~-----------------------~~~~~~~~~~~~-------~~ 64 (279)
T d1thma_ 16 QKIQAPQAWDIA-EGSGAKIAIVDTGVQSNHPDLAG-----------------------KVVGGWDFVDND-------ST 64 (279)
T ss_dssp HHTTHHHHHTTC-CCTTCEEEEEESCCCTTCTTTTT-----------------------TEEEEEETTTTB-------SC
T ss_pred hhCCHHHHHhcc-CCCCcEEEEEcCCCCCCChhhcC-----------------------CeeccccccccC-------cc
Confidence 456677788776 99999999999999999999963 355666776543 45
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGS 238 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~ 238 (734)
+.|..+||||||++|++....+ ..+.|+||+|+|+.+|++...+ +...+++++|+++++.+++|+|+|||.
T Consensus 65 ~~d~~~HGT~vag~i~~~~~~~--------~~~~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~ 136 (279)
T d1thma_ 65 PQNGNGHGTHCAGIAAAVTNNS--------TGIAGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGG 136 (279)
T ss_dssp CCCSSSHHHHHHHHHHCCCSSS--------SSCCCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred cccccccccccceeeeeccCCC--------ccccccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCc
Confidence 6788999999999999986432 2348999999999999998766 778899999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 239 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
.. .......+...+.++|+++|+|+||+|......+...+++++|||++.+
T Consensus 137 ~~----~~~~~~~a~~~a~~~~~~~v~aagn~g~~~~~~~~~~~~vi~Vga~~~~------------------------- 187 (279)
T d1thma_ 137 TV----GNSGLQQAVNYAWNKGSVVVAAAGNAGNTAPNYPAYYSNAIAVASTDQN------------------------- 187 (279)
T ss_dssp SS----CCHHHHHHHHHHHHTTCEEEEECCSSSSCCCCBTTTSTTEEEEEEECTT-------------------------
T ss_pred cc----cchhHHHHHHHHHhcCceEEEeccccccCCCccccccccccccccccCC-------------------------
Confidence 73 3345667777889999999999999998877777778999999885422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 188 -------------------------------------------------------------------------------- 187 (279)
T d1thma_ 188 -------------------------------------------------------------------------------- 187 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++|++. ||.|||.+|+++.+.
T Consensus 188 ------------------------------------~~~~~~S~~G~~~--------di~Apg~~i~~~~~~-------- 215 (279)
T d1thma_ 188 ------------------------------------DNKSSFSTYGSWV--------DVAAPGSSIYSTYPT-------- 215 (279)
T ss_dssp ------------------------------------SCBCTTCCCCTTC--------CEEEECSSEEEEETT--------
T ss_pred ------------------------------------CCCccccCCCceE--------EEeeeeeccccccCc--------
Confidence 3678899999986 999999999999886
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||+|||++|||+|.+| ++.+||++|++||+++... +..||||+||+.+||+
T Consensus 216 -----~~~~~~sGTS~AaP~vaG~~ALl~~~~~--s~~~i~~~L~~tA~~~~g~-----~~~~G~G~vn~~~Av~ 278 (279)
T d1thma_ 216 -----STYASLSGTSMATPHVAGVAGLLASQGR--SASNIRAAIENTADKISGT-----GTYWAKGRVNAYKAVQ 278 (279)
T ss_dssp -----TEEEEECSHHHHHHHHHHHHHHHHTTTC--CHHHHHHHHHHTCBCCTTB-----TTTBSSEECCHHHHHH
T ss_pred -----ccccccCCcchhhHHHHHHHHHHhcCCc--CHHHHHHHHHhhCccCCCC-----CCcceeeeEcHHHhhC
Confidence 7899999999999999999999999665 7899999999999987643 6789999999999975
|
| >d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]
Probab=100.00 E-value=1.2e-47 Score=402.08 Aligned_cols=262 Identities=27% Similarity=0.405 Sum_probs=217.9
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
+.++++++|..+++|+||+|+|||||||++||+|+ ....+++..... ..
T Consensus 9 ~~i~a~~aw~~g~tG~Gv~IaviDtGv~~~Hp~l~-------------------------~~~~~~~~~~~~------~~ 57 (281)
T d1to2e_ 9 SQIKAPALHSQGYTGSNVKVAVIDSGIDSSHPDLK-------------------------VAGGASMVPSET------NP 57 (281)
T ss_dssp HHTTHHHHHHHTCSCTTCEEEEEESCCCTTCTTCC-------------------------EEEEEECCTTCC------CT
T ss_pred HHhCcHHHHHCCCCCCCeEEEEECCCCCCCChhhh-------------------------hcCCccccCCCC------CC
Confidence 45666778888999999999999999999999995 223344443321 22
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGS 238 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~ 238 (734)
..+..+|||||||||+|.... ....|+||+|+|+.+|++..++ ....++++||+|+++.+++|||+|||.
T Consensus 58 ~~~~~~HGT~vAgiiag~~~~---------~~~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~ 128 (281)
T d1to2e_ 58 FQDNNSHGTHVAGTVAALNNS---------IGVLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGG 128 (281)
T ss_dssp TCCSSSHHHHHHHHHHCCSSS---------SSBCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEB
T ss_pred CcCcCCCCceeecccccCCCC---------CCcceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCC
Confidence 334679999999999987532 1238999999999999998776 677889999999999999999999997
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCC----CcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecc
Q 044427 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPY----SVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSIN 314 (734)
Q Consensus 239 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~----~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~ 314 (734)
.. ....+..++.++.++|+++|+||||+|.... ..+...+++|+||+.+.+
T Consensus 129 ~~----~~~~~~~ai~~~~~~gil~V~aAGN~g~~~~~~~~~~pa~~~~vi~Vga~~~~--------------------- 183 (281)
T d1to2e_ 129 PS----GSAALKAAVDKAVASGVVVVAAAGNEGTSGSSSTVGYPGKYPSVIAVGAVDSS--------------------- 183 (281)
T ss_dssp SC----CCHHHHHHHHHHHHTTCEEEEECCSCCCCTTSCCCCBTTTSTTSEEEEEECTT---------------------
T ss_pred Cc----chHHHHHHHHHHHhcCCcceecccCcccCCCCCCccCCCCCCceEEEEeecCC---------------------
Confidence 72 4456777888889999999999999986543 234456788888875422
Q ss_pred cCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCc
Q 044427 315 SFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSY 394 (734)
Q Consensus 315 ~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~ 394 (734)
T Consensus 184 -------------------------------------------------------------------------------- 183 (281)
T d1to2e_ 184 -------------------------------------------------------------------------------- 183 (281)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCC
Q 044427 395 PLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPP 474 (734)
Q Consensus 395 ~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~ 474 (734)
+.++.||++||.. |+.|||.+|+++.+.
T Consensus 184 ----------------------------------------~~~~~~S~~G~~~--------d~~apG~~i~s~~~~---- 211 (281)
T d1to2e_ 184 ----------------------------------------NQRASFSSVGPEL--------DVMAPGVSIQSTLPG---- 211 (281)
T ss_dssp ----------------------------------------SCBCTTCCCSTTC--------CEEEECSSEEEEETT----
T ss_pred ----------------------------------------CCCCcccCCCCCc--------cccCCCCCceeecCC----
Confidence 3678899999976 999999999999876
Q ss_pred CCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 475 SLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 475 ~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
+.|..++|||||||+|||++|||+|++|.|++.+||++|++||+++.. +..||+|+||+.+|++
T Consensus 212 ---------~~~~~~~GTS~Aap~vaG~~All~~~~p~lt~~~i~~~L~~tA~~~~~------~~~~G~G~ld~~~A~~ 275 (281)
T d1to2e_ 212 ---------NKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGD------SFYYGKGLINVQAAAQ 275 (281)
T ss_dssp ---------TEEEEECBHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHTTCBCCSC------HHHHTTCBCCHHHHTS
T ss_pred ---------CeeEcccCcchhHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCcccHHHHHh
Confidence 789999999999999999999999999999999999999999998753 5679999999999998
|
| >d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Subtilisin species: Bacillus lentus [TaxId: 1467]
Probab=100.00 E-value=1.9e-47 Score=397.87 Aligned_cols=260 Identities=29% Similarity=0.415 Sum_probs=220.9
Q ss_pred cccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCC
Q 044427 80 DFMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHS 159 (734)
Q Consensus 80 ~~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~ 159 (734)
+.++++.+|..+++|+||+||||||||| +||+|. ....++|..+. ..
T Consensus 9 ~~i~~~~aw~~g~tG~gv~V~ViDsGv~-~h~~l~-------------------------~~~~~~~~~~~-------~~ 55 (269)
T d1gcia_ 9 SRVQAPAAHNRGLTGSGVKVAVLDTGIS-THPDLN-------------------------IRGGASFVPGE-------PS 55 (269)
T ss_dssp HHTTHHHHHHTTCSCTTCEEEEEESCCC-CCTTCC-------------------------EEEEEECSTTC-------CS
T ss_pred hHhCcHHHHhCCCCCCCeEEEEECCCCC-CCcccC-------------------------ccccccccCCC-------CC
Confidence 4567777898999999999999999998 899995 22344555432 45
Q ss_pred CCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhCCCcEEEEccCC
Q 044427 160 PRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIADGVDIISVSLGS 238 (734)
Q Consensus 160 ~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~g~dVINlSlG~ 238 (734)
+.|..+|||||||||++.... +...|+||+|+|+.+|++...+ .....+.++|+++..+++++||+|||.
T Consensus 56 ~~d~~~HGT~vAgii~~~~~~---------~~~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~ 126 (269)
T d1gcia_ 56 TQDGNGHGTHVAGTIAALNNS---------IGVLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGS 126 (269)
T ss_dssp CSCSSSHHHHHHHHHHCCCSS---------SBCCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCB
T ss_pred ccccchhhheecccccccCCC---------ccccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccc
Confidence 667889999999999987532 2347999999999999998766 677789999999999999999999998
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCC
Q 044427 239 DFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDL 318 (734)
Q Consensus 239 ~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~ 318 (734)
.. .......+...+.++|+++|+||||+|......+...|++|+||+++.+
T Consensus 127 ~~----~~~~~~~a~~~a~~~gilvv~AaGN~g~~~~~~Pa~~~~vi~Vga~~~~------------------------- 177 (269)
T d1gcia_ 127 PS----PSATLEQAVNSATSRGVLVVAASGNSGAGSISYPARYANAMAVGATDQN------------------------- 177 (269)
T ss_dssp SS----CCHHHHHHHHHHHHTTCEEEEECCSSCCSSCCBTTTSTTEEEEEEECTT-------------------------
T ss_pred cc----ccchHHHHHHhhccCceEEEeccCCCCCCCccCccccCCceEEEEEccC-------------------------
Confidence 73 2344556677889999999999999998777777788999999985422
Q ss_pred CCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcce
Q 044427 319 NGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPA 398 (734)
Q Consensus 319 ~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~ 398 (734)
T Consensus 178 -------------------------------------------------------------------------------- 177 (269)
T d1gcia_ 178 -------------------------------------------------------------------------------- 177 (269)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCC
Q 044427 399 TLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDP 478 (734)
Q Consensus 399 ~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~ 478 (734)
+.++.||++||.. ||+|||.++.++.+.
T Consensus 178 ------------------------------------~~~~~~S~~G~~~--------di~Apg~~~~~~~~~-------- 205 (269)
T d1gcia_ 178 ------------------------------------NNRASFSQYGAGL--------DIVAPGVNVQSTYPG-------- 205 (269)
T ss_dssp ------------------------------------SCBCTTCCCSTTE--------EEEEECSSEEEEETT--------
T ss_pred ------------------------------------CCcccccCCCCCc--------eEEEeeecceeccCC--------
Confidence 3678899999975 999999999999876
Q ss_pred CCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCccccCC
Q 044427 479 EDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINPAQAID 553 (734)
Q Consensus 479 ~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~~~Al~ 553 (734)
..|..++|||||||+|||++|||+|++|+|++++||++|++||.+++. +..||||+||+++|++
T Consensus 206 -----~~~~~~sGTS~AaP~vaG~aAll~~~~p~lt~~~i~~~L~~tA~~~g~------~~~~G~G~ln~~~Avk 269 (269)
T d1gcia_ 206 -----STYASLNGTSMATPHVAGAAALVKQKNPSWSNVQIRNHLKNTATSLGS------TNLYGSGLVNAEAATR 269 (269)
T ss_dssp -----TEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTSBCCSC------HHHHTTCBCCHHHHTC
T ss_pred -----CceEecCCcchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCC------CCCcccCeEcHHHhcC
Confidence 789999999999999999999999999999999999999999988754 5679999999999986
|
| >d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Sphericase species: Bacillus sphaericus [TaxId: 1421]
Probab=100.00 E-value=2.7e-42 Score=365.59 Aligned_cols=286 Identities=27% Similarity=0.318 Sum_probs=217.7
Q ss_pred ccccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCC
Q 044427 81 FMGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSP 160 (734)
Q Consensus 81 ~~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~ 160 (734)
.++++++|..+++|+||+|+|||||||++||+|.+. +...++|....... ....
T Consensus 12 ~i~~~~aw~~~~~G~gv~V~ViDsGv~~~Hp~~~~~-----------------------~~~~~~~~~~~~~~---~~~~ 65 (309)
T d2ixta1 12 AIYNNDTLTSTTGGSGINIAVLDTGVNTSHPDLVNN-----------------------VEQCKDFTGATTPI---NNSC 65 (309)
T ss_dssp HHHTCTTCCCCCCCTTCEEEEEESCCCTTCTTTTTT-----------------------EEEEEESSSSSSCE---ETCC
T ss_pred hcCChhhhccCCCCCCeEEEEEccCCCCCChhHhcc-----------------------ccccccccCCCCCC---CCCc
Confidence 466677899999999999999999999999999632 44556665443211 1345
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC-----CCcEEEE
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD-----GVDIISV 234 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-----g~dVINl 234 (734)
.|..+|||||||||+|....+ ...+.||||+|+|+.++++...+ +...+++.+++++++. ...|+|+
T Consensus 66 ~d~~gHGT~VAgiiaa~~~~~-------~~~~~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~ 138 (309)
T d2ixta1 66 TDRNGHGTHVAGTALADGGSD-------QAGIYGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISM 138 (309)
T ss_dssp CCSSSHHHHHHHHHHCBCCTT-------SCSCBCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ccccccccccccccccccccc-------chhhhhhhhhccceeeeeecCCCCcccccccccccccccccccccccccccc
Confidence 678899999999999875332 12248999999999999988765 6788899999998875 3468999
Q ss_pred ccCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcC--CCCCceEEecccccCceeEEEEEeCCCeEeeeee
Q 044427 235 SLGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVS--NFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLS 312 (734)
Q Consensus 235 SlG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~ 312 (734)
|++... .......+...+.++|+++|+||||++.....+. ...+++++|++.+.......
T Consensus 139 s~~~~~----~~~~~~~~~~~~~~~g~~~V~aaGn~~~~~~~~~~pa~~~~~~~v~~~~~~~~~~~-------------- 200 (309)
T d2ixta1 139 SLGSSA----NNSLISSAVNYAYSKGVLIVAAAGNSGYSQGTIGYPGALPNAIAVAALENVQQNGT-------------- 200 (309)
T ss_dssp CCCBSS----CCHHHHHHHHHHHHTTCEEEEECCSCCSSTTCCCBTTTSTTSEEEEEEEEEEETTE--------------
T ss_pred cccccc----cccchhccccchhcCCceEEEEeccccccCCCcCCchhhhcccccccccccccccc--------------
Confidence 998762 3345566667888999999999999987655433 34577788776432210000
Q ss_pred cccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCccc
Q 044427 313 INSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAF 392 (734)
Q Consensus 313 ~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~ 392 (734)
...
T Consensus 201 ------------------------------------------------------------------~~~----------- 203 (309)
T d2ixta1 201 ------------------------------------------------------------------YRV----------- 203 (309)
T ss_dssp ------------------------------------------------------------------EEE-----------
T ss_pred ------------------------------------------------------------------ccc-----------
Confidence 000
Q ss_pred CcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCC
Q 044427 393 SYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVA 472 (734)
Q Consensus 393 ~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~ 472 (734)
........++++|+.. ....||||+|||.+|+++...
T Consensus 204 ---------------------------------------~~~~~~~~~~~~~~~~--~~~~~vdi~apG~~~~s~~~~-- 240 (309)
T d2ixta1 204 ---------------------------------------ADYSSRGYISTAGDYV--IQEGDIEISAPGSSVYSTWYN-- 240 (309)
T ss_dssp ---------------------------------------CTTSCCCCTTTTTSSS--CCTTCCCEEEECSSEEEECTT--
T ss_pred ---------------------------------------cccccccccccccccc--cCCCcceeecCCCceeeecCC--
Confidence 0112344567778776 667899999999999999876
Q ss_pred CCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc----cCCCCCCCCccCc
Q 044427 473 PPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE----DLEFAYGSGHINP 548 (734)
Q Consensus 473 ~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~----~~~~~~G~G~vn~ 548 (734)
..|..++|||||||+|||++|||+|++|+|++.+||++|++||++++..+.. ..+..+|||++|+
T Consensus 241 -----------~~~~~~sGTS~AaP~VaG~~Ali~~~~p~lt~~~v~~~L~~tA~~~~~~~~~g~~~~~~~~~g~G~~~v 309 (309)
T d2ixta1 241 -----------GGYNTISGTSMATPHVSGLAAKIWAENPSLSNTQLRSNLQERAKSVDIKGGYGAAIGDDYASGFGFARV 309 (309)
T ss_dssp -----------SSEEEECSHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTSCCCBSTTCCSSSBTTTBTCBCCC
T ss_pred -----------CcceeecCccchhHHHHHHHHHHHHHCCCCCHHHHHHHHHhhCccCCCCCCcCCccCCCcccCCCEecC
Confidence 7799999999999999999999999999999999999999999987654321 2578889999874
|
| >d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Alkaline serine protease kp-43, N-terminal domain species: Bacillus sp. KSM-KP43 [TaxId: 109322]
Probab=100.00 E-value=2.5e-41 Score=359.49 Aligned_cols=301 Identities=24% Similarity=0.288 Sum_probs=222.2
Q ss_pred cccccccCcc-CCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCC
Q 044427 80 DFMGFSKGKL-SSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFH 158 (734)
Q Consensus 80 ~~~g~~~~~~-~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~ 158 (734)
++++++.++. .|+||+||+|||||||||++||+|.... . .+.++...+.+... .
T Consensus 6 ~~~~~~~~~~~~G~tG~Gv~VaIiDsGi~~~h~~~~~~~------~-----------~~~~~~~~~~~~~~--------~ 60 (318)
T d1wmda2 6 GIVKADVAQSSYGLYGQGQIVAVADTGLDTGRNDSSMHE------A-----------FRGKITALYALGRT--------N 60 (318)
T ss_dssp HHTTHHHHHHHHCCSCTTCEEEEEESCCTTSCSSTTSCT------T-----------TTTCEEEEEETTTT--------T
T ss_pred cccCchhHHHccCccccCeEEEEEcCCcCCCCcccccCc------c-----------cCCcEEeecCCCCC--------C
Confidence 4566666664 5999999999999999999999997421 0 12334444444332 4
Q ss_pred CCCCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC---CCHHHHHHHHHHHHhCCCcEEEEc
Q 044427 159 SPRDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG---CATADILAAFDDAIADGVDIISVS 235 (734)
Q Consensus 159 ~~~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g---~~~~~i~~ai~~ai~~g~dVINlS 235 (734)
.+.|..||||||||||+|+... ..||||+|+|+.+|+++..+ .....+..+++++...+++|+|+|
T Consensus 61 ~~~d~~gHGT~vAgiiag~~~~-----------~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S 129 (318)
T d1wmda2 61 NANDTNGHGTHVAGSVLGNGST-----------NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNS 129 (318)
T ss_dssp CCCCSSSHHHHHHHHHHCCSSS-----------SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCCCccceeeccccccc-----------cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecc
Confidence 5667899999999999997532 27999999999999998765 344557789999999999999999
Q ss_pred cCCCCCCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCCcCC--CCCceEEecccccCceeEEEEEeCCCeEeeeeec
Q 044427 236 LGSDFPFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYSVSN--FAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSI 313 (734)
Q Consensus 236 lG~~~~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~--~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~ 313 (734)
||... ..........+...+.++++++|+|+||.|.....+.. ..++++++.+.......
T Consensus 130 ~g~~~-~~~~~~~~~~~~~~~~~~~~~~v~aagn~g~~~~~~~~~~~~~~~i~~~~~~~~~~~----------------- 191 (318)
T d1wmda2 130 WGAAV-NGAYTTDSRNVDDYVRKNDMTILFAAGNEGPNGGTISAPGTAKNAITVGATENLRPS----------------- 191 (318)
T ss_dssp CCBCC-TTCCCHHHHHHHHHHHHSSCEEEEECCSCTTSSSCCCBSTTCSSSEEEEEECCSCGG-----------------
T ss_pred ccccc-ccccchhHHHHHHHHhhcceeeeeeeccccccccccccccccccccceeeccCcccc-----------------
Confidence 99874 33344455556666779999999999999977654433 34566666553321000
Q ss_pred ccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccC
Q 044427 314 NSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFS 393 (734)
Q Consensus 314 ~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~ 393 (734)
.+.
T Consensus 192 -------------------------------~~~---------------------------------------------- 194 (318)
T d1wmda2 192 -------------------------------FGS---------------------------------------------- 194 (318)
T ss_dssp -------------------------------GCG----------------------------------------------
T ss_pred -------------------------------ccc----------------------------------------------
Confidence 000
Q ss_pred cCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCC
Q 044427 394 YPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAP 473 (734)
Q Consensus 394 ~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~ 473 (734)
.......+..+|++||.. ....|||+.|||.+|+++......
T Consensus 195 ------------------------------------~~~~~~~~~~~s~~G~~~--~~~~~~~~~a~G~~i~~~~~~~~~ 236 (318)
T d1wmda2 195 ------------------------------------YADNINHVAQFSSRGPTK--DGRIKPDVMAPGTFILSARSSLAP 236 (318)
T ss_dssp ------------------------------------GGSCTTSBCTTSCCCCCT--TSCCCCCEEEECSSEEEECCTTCC
T ss_pred ------------------------------------ccccccccccccccCCCc--CCCcccceeecCceEEeccccccc
Confidence 001123577889999987 778999999999999998765322
Q ss_pred CCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCC-----CCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCc
Q 044427 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHP-----NWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINP 548 (734)
Q Consensus 474 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P-----~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~ 548 (734)
.... .......|..++|||||||+|||++|||+|++| .|++.+||++|++||++.+..+. +..||||+||+
T Consensus 237 ~~~~-~~~~~~~~~~~~GTS~AaP~VaG~~ALl~~~~p~~~~~~~~~~~i~~~l~~tA~~~~~~~~---~~~~G~G~ld~ 312 (318)
T d1wmda2 237 DSSF-WANHDSKYAYMGGTSMATPIVAGNVAQLREHFVKNRGITPKPSLLKAALIAGAADIGLGYP---NGNQGWGRVTL 312 (318)
T ss_dssp GGGS-SEEEETTEEEECSHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHCBCCSSCSS---CTTTTTCBCCH
T ss_pred cCcc-ccCCCcceeeccCcchhhHHHHHHHHHHHHHhHhhcCCCCCHHHHHHHHHhhCccCCCCCC---CCCeeeceecH
Confidence 1111 111235688899999999999999999999754 68999999999999998766543 78899999999
Q ss_pred cccCC
Q 044427 549 AQAID 553 (734)
Q Consensus 549 ~~Al~ 553 (734)
.+||+
T Consensus 313 ~~Al~ 317 (318)
T d1wmda2 313 DKSLN 317 (318)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 99986
|
| >d2pwaa1 c.41.1.1 (A:1-279) Proteinase K {Fungus (Tritirachium album), strain limber [TaxId: 37998]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Proteinase K species: Fungus (Tritirachium album), strain limber [TaxId: 37998]
Probab=100.00 E-value=2e-41 Score=354.07 Aligned_cols=238 Identities=29% Similarity=0.371 Sum_probs=193.0
Q ss_pred cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChH
Q 044427 89 LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGT 168 (734)
Q Consensus 89 ~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGT 168 (734)
....+|+||+|+|||||||++||+|.+. +.....+. ..+.|..+|||
T Consensus 25 ~~~~tG~Gv~VaViDsGid~~Hpdf~g~-----------------------~~~~~~~~----------~~~~d~~gHGT 71 (279)
T d2pwaa1 25 YDESAGQGSCVYVIDTGIEASHPEFEGR-----------------------AQMVKTYY----------YSSRDGNGHGT 71 (279)
T ss_dssp CCTTTTTTEEEEEEESCCCTTCGGGTTC-----------------------EEEEEESS----------SCSSCSSSHHH
T ss_pred ecCCCCCCeEEEEECcCCCCCChhhcCC-----------------------ceeccCCC----------CCcccccCccc
Confidence 4566999999999999999999999742 11111121 23457789999
Q ss_pred HHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC-------CCcEEEEccCCCC
Q 044427 169 HTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD-------GVDIISVSLGSDF 240 (734)
Q Consensus 169 hVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-------g~dVINlSlG~~~ 240 (734)
||||||+|+. .|+||+|+|+.+|++.... ....++..+++++... +++|+|+|||..
T Consensus 72 ~VAgiia~~~--------------~G~a~~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~n~s~g~~- 136 (279)
T d2pwaa1 72 HCAGTVGSRT--------------YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGG- 136 (279)
T ss_dssp HHHHHHHCTT--------------TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE-
T ss_pred cccccccccc--------------cccCCCccccceeeecCCcccccccccchhheecccccccccccccceeccCCCc-
Confidence 9999999864 6999999999999988765 6778888999998874 345999999976
Q ss_pred CCCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC-cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeecccCCCC
Q 044427 241 PFEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS-VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINSFDLN 319 (734)
Q Consensus 241 ~~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~ 319 (734)
..+.+..++.++.++|+++|+||||++..... .+...|++|+|||.+.+
T Consensus 137 ----~~~~~~~~~~~~~~~gil~V~aaGN~~~~~~~~~p~~~~~vi~VgA~~~~-------------------------- 186 (279)
T d2pwaa1 137 ----YSSSVNSAAARLQSSGVMVAVAAGNNNADARNYSPASEPSVCTVGASDRY-------------------------- 186 (279)
T ss_dssp ----CCHHHHHHHHHHHHTTEEEEEECCSSSSBGGGEETTTCTTSEEEEEECTT--------------------------
T ss_pred ----cccccchhhhhhhhCCcEEEEeCccccccccccCCccCCceEEeeeEeec--------------------------
Confidence 34567777788899999999999999865432 44556888888875422
Q ss_pred CceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcCcceE
Q 044427 320 GISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYPLPAT 399 (734)
Q Consensus 320 ~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~~p~~ 399 (734)
T Consensus 187 -------------------------------------------------------------------------------- 186 (279)
T d2pwaa1 187 -------------------------------------------------------------------------------- 186 (279)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccCCCCCCCCCCC
Q 044427 400 LISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWSPVAPPSLDPE 479 (734)
Q Consensus 400 ~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~~~~~~~~~~~ 479 (734)
+.++.||++||.. ||+|||.+|+++++.
T Consensus 187 -----------------------------------g~~~~~S~~G~~~--------dv~APG~~i~s~~~~--------- 214 (279)
T d2pwaa1 187 -----------------------------------DRRSSFSNYGSVL--------DIFGPGTDILSTWIG--------- 214 (279)
T ss_dssp -----------------------------------SBBCTTCCBSTTC--------CEEEECSSEEEEETT---------
T ss_pred -----------------------------------CCCccccCCCCcc--------ccccccccccccccC---------
Confidence 3678999999975 999999999999886
Q ss_pred CCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcccCCCCCCCCccCc
Q 044427 480 DTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQEDLEFAYGSGHINP 548 (734)
Q Consensus 480 ~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~~~~~~~G~G~vn~ 548 (734)
+.|..++|||||||+|||++|||+|++|.++++++|. |++||++.. ....|+|++|+
T Consensus 215 ----~~~~~~sGTS~AaP~VaG~aAll~~~~p~~~~~~~~~-ll~ta~~~~-------~~~~g~g~~n~ 271 (279)
T d2pwaa1 215 ----GSTRSISGTSMATPHVAGLAAYLMTLGKTTAASACRY-IADTANKGD-------LSNIPFGTVNL 271 (279)
T ss_dssp ----TEEEEECSHHHHHHHHHHHHHHHHHTTSCCTTTHHHH-HHHHSEESC-------CBSCCTTSCCE
T ss_pred ----CcccCCCcchhHHHHHHHHHHHHHHhCCCChHHHHHH-HHHhCcCCC-------CCCCCCCChhh
Confidence 7899999999999999999999999999999887775 677887633 45689999986
|
| >d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Furin, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=3.1e-38 Score=337.71 Aligned_cols=278 Identities=16% Similarity=0.179 Sum_probs=187.4
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecC-CCCccccCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYN-SENIYEVTDFHSP 160 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~-~~~~~~~~~~~~~ 160 (734)
++++.+|..+.+|+||+|||||||||++||+|.+.. ...+.|. .+......+....
T Consensus 24 in~~~aw~~g~~G~gv~VaViDtGv~~~Hpdl~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~ 80 (334)
T d1p8ja2 24 LNVKEAWAQGFTGHGIVVSILDDGIEKNHPDLAGNY-----------------------DPGASFDVNDQDPDPQPRYTQ 80 (334)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEEBCCCTTCTTTGGGB-----------------------CGGGCEETTTTBSCCCCCCCT
T ss_pred CCHHHHHhcCCCCCCeEEEEEccCCCCCChhHhhcc-----------------------ccCCCccccCCCCcccccccc
Confidence 455668889999999999999999999999997431 1111111 1111112222345
Q ss_pred CCCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh-CCCcEEEEccCCC
Q 044427 161 RDSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA-DGVDIISVSLGSD 239 (734)
Q Consensus 161 ~D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~-~g~dVINlSlG~~ 239 (734)
.|..+|||||||||+|...++. ...|+||+++++.+|++.. ...+.+.++.++++ .+++++|+|||..
T Consensus 81 ~~~~gHGT~vAgiia~~~~n~~--------~~~g~a~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~n~S~g~~ 149 (334)
T d1p8ja2 81 MNDNRHGTRCAGEVAAVANNGV--------CGVGVAYNARIGGVRMLDG---EVTDAVEARSLGLNPNHIHIYSASWGPE 149 (334)
T ss_dssp TCTTCHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECSSS---CCCHHHHHHHHTSCTTTCCEEEECCBSC
T ss_pred ccCccchhhhhhhhhhcccccc--------ccccccccccccchhhccc---cccchHHHHHHHhhhcCCcEEeCCCCCC
Confidence 5788999999999999864321 1279999999999998753 34455667777765 6899999999986
Q ss_pred CCCCCCCCH--------HHHHHHHHHhCCcEEEEcCCCCCCCCCCcCC----CCCceEEecccccCceeEEEEEeCCCeE
Q 044427 240 FPFEYFEDP--------IAIGSFHAMKYGILTSNSAGNSGPDPYSVSN----FAPWTLTVAASSIDRKFVAQAVLGNGIT 307 (734)
Q Consensus 240 ~~~~~~~~~--------~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~~----~ap~vitVga~~~~~~~~~~~~~~~g~~ 307 (734)
........+ +..+...+..+|+++|+||||++........ ..+.+++|++.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~lvV~AaGN~~~~~~~~~~~~~~~~~~~~~v~~~~~--------------- 214 (334)
T d1p8ja2 150 DDGKTVDGPARLAEEAFFRGVSQGRGGLGSIFVWASGNGGREHDSCNCDGYTNSIYTLSISSATQ--------------- 214 (334)
T ss_dssp CSSSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCBGGGBTTTTSTTEEEEEEECT---------------
T ss_pred CcCcccCCccchhhHHHHHHHHHHHhcCCceEEEecCCCCccCCCCCcccccccccccccccccc---------------
Confidence 422222211 2223334567899999999998755432211 1233444444321
Q ss_pred eeeeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCc
Q 044427 308 YPGLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 308 ~~g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~ 387 (734)
T Consensus 215 -------------------------------------------------------------------------------- 214 (334)
T d1p8ja2 215 -------------------------------------------------------------------------------- 214 (334)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCcccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCC----
Q 044427 388 TDLAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVD---- 463 (734)
Q Consensus 388 ~~~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~---- 463 (734)
.+..+.||++|+.. .....+||..
T Consensus 215 ----------------------------------------------~g~~~~~s~~~~~~------~~~~~~~~~~~~~~ 242 (334)
T d1p8ja2 215 ----------------------------------------------FGNVPWYSEACSST------LATTYSSGNQNEKQ 242 (334)
T ss_dssp ----------------------------------------------TSCCCTTCCBCTTC------CEEEECCCSTTSCC
T ss_pred ----------------------------------------------CCceeeecccCCcc------cccccccccccccc
Confidence 12344555555543 1233344322
Q ss_pred -EeeccCCCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc-------
Q 044427 464 -ILASWSPVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE------- 535 (734)
Q Consensus 464 -I~sa~~~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~------- 535 (734)
+.+... ...|..++|||||||+|||++|||+|++|+|++.+||++|++||.+.......
T Consensus 243 ~~~~~~~-------------~~~~~~~sGTS~AaP~VaG~aALl~s~~p~lt~~~v~~~L~~TA~~~~~~~~~~~~~~~~ 309 (334)
T d1p8ja2 243 IVTTDLR-------------QKCTESHTGTSASAPLAAGIIALTLEANKNLTWRDMQHLVVQTSKPAHLNADDWATNGVG 309 (334)
T ss_dssp EEEEETT-------------TEEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCTTCCCSCCEECTTS
T ss_pred ccccccC-------------CccccCCCCccccchHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcccCCCCccccccCCC
Confidence 222222 26788999999999999999999999999999999999999999886543221
Q ss_pred -cCCCCCCCCccCccccCC
Q 044427 536 -DLEFAYGSGHINPAQAID 553 (734)
Q Consensus 536 -~~~~~~G~G~vn~~~Al~ 553 (734)
..+..||||+||+.+||+
T Consensus 310 ~~~~~~~G~G~lna~~Av~ 328 (334)
T d1p8ja2 310 RKVSHSYGYGLLDAGAMVA 328 (334)
T ss_dssp CEEBTTTBTCBCCHHHHHH
T ss_pred cccCCCCcceEeCHHHHHH
Confidence 135679999999999987
|
| >d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Subtilases domain: Kexin, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.1e-37 Score=334.49 Aligned_cols=281 Identities=18% Similarity=0.152 Sum_probs=197.5
Q ss_pred cccccCccCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCC
Q 044427 82 MGFSKGKLSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPR 161 (734)
Q Consensus 82 ~g~~~~~~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~ 161 (734)
+++..+|..+++|+||+|||||||||++||+|.+.... .+.++|.+... ......
T Consensus 33 in~~~aw~~g~~G~gv~VaViDtGid~~Hp~l~~~~~~---------------------~~~~~~~~~~~----~~~~~~ 87 (339)
T d2id4a2 33 INVLDLWYNNITGAGVVAAIVDDGLDYENEDLKDNFCA---------------------EGSWDFNDNTN----LPKPRL 87 (339)
T ss_dssp CCCHHHHHTTCSCTTCEEEEEESCCCTTSTTTTTTBCG---------------------GGCEETTTTBS----CCCCCS
T ss_pred cCHHHHHhcCCCCCCcEEEEECcCcCCCChHHhcCccc---------------------ccccccccCCC----ccCCCc
Confidence 45556788999999999999999999999999753110 01233443221 113345
Q ss_pred CCCCChHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHhCCCcEEEEccCCCCC
Q 044427 162 DSEGHGTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIADGVDIISVSLGSDFP 241 (734)
Q Consensus 162 D~~gHGThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~~g~dVINlSlG~~~~ 241 (734)
+..+||||||++|+|....+. .+.|+||+|+|+.++++.. .....++..++.++++. .+|+|+|||....
T Consensus 88 ~~~~HGT~vag~iaa~~~~~~--------~~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~s~g~~~~ 157 (339)
T d2id4a2 88 SDDYHGTRCAGEIAAKKGNNF--------CGVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDV-NDIYSCSWGPADD 157 (339)
T ss_dssp TTTTHHHHHHHHHHCCSSSSS--------SCCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTT-CSEEEECEESCCS
T ss_pred ccccccceeeecccccccccc--------cccccccccccceEEEeec-cccchHHHHHHHHHHhh-CCEEeccCCCCCC
Confidence 678999999999998764321 2389999999999998753 35666777888776654 5999999997632
Q ss_pred CCCC---CCH-----HHHHHHHHHhCCcEEEEcCCCCCCCCCCcC--C--CCCceEEecccccCceeEEEEEeCCCeEee
Q 044427 242 FEYF---EDP-----IAIGSFHAMKYGILTSNSAGNSGPDPYSVS--N--FAPWTLTVAASSIDRKFVAQAVLGNGITYP 309 (734)
Q Consensus 242 ~~~~---~~~-----~~~a~~~a~~~Gi~vV~AAGN~G~~~~~~~--~--~ap~vitVga~~~~~~~~~~~~~~~g~~~~ 309 (734)
.... ... ...+...+..+|+++|+||||++....... . ..+.+++|++++
T Consensus 158 ~~~~~~~~~~~~~a~~~~~~~~~~~~g~i~v~AaGN~~~~~~~~~~~~~~~~~~~~~~~~~~------------------ 219 (339)
T d2id4a2 158 GRHLQGPSDLVKKALVKGVTEGRDSKGAIYVFASGNGGTRGDNCNYDGYTNSIYSITIGAID------------------ 219 (339)
T ss_dssp SSCCBCCCHHHHHHHHHHHHHHHHHTCCEEEEECCSCGGGTCCGGGBTTTTCTTEEEEEEEC------------------
T ss_pred cccccCccchhHHHHHHHHHHHHhcCCcEEEecccCCccCCCcccccccccccccccccccc------------------
Confidence 1111 111 222334456799999999999875432211 1 122333333221
Q ss_pred eeecccCCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccC
Q 044427 310 GLSINSFDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTD 389 (734)
Q Consensus 310 g~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~ 389 (734)
T Consensus 220 -------------------------------------------------------------------------------- 219 (339)
T d2id4a2 220 -------------------------------------------------------------------------------- 219 (339)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccCcCcceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEeeccC
Q 044427 390 LAFSYPLPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILASWS 469 (734)
Q Consensus 390 ~~~~~~~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~sa~~ 469 (734)
..+..+.||++|+.. ...++..+||..+.+...
T Consensus 220 -------------------------------------------~~g~~~~~s~~~~~~----~~~~~~~~~g~~~~s~~~ 252 (339)
T d2id4a2 220 -------------------------------------------HKDLHPPYSEGCSAV----MAVTYSSGSGEYIHSSDI 252 (339)
T ss_dssp -------------------------------------------TTSCCCTTCCCCTTE----EEEEECSBTTBCEEEECS
T ss_pred -------------------------------------------ccccccccccccCcc----ceeeeeeccccccceecc
Confidence 123455666666643 334567788988887765
Q ss_pred CCCCCCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCCCCHHHHHHHHHhccccccCCCcc---------cCCCC
Q 044427 470 PVAPPSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPNWSPSSIKSALMTTAYVMDSRKQE---------DLEFA 540 (734)
Q Consensus 470 ~~~~~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~ls~~~vk~~L~~TA~~~~~~~~~---------~~~~~ 540 (734)
. ...|..++|||||||||||++|||+|++|+|++.+||.+|+.||.+++..... ..+..
T Consensus 253 ~------------~~~~~~~sGTS~AtP~vaG~aALv~~~~P~lt~~~i~~~l~~tA~~~~~~~~~~~~~~~~~~~~~~~ 320 (339)
T d2id4a2 253 N------------GRCSNSHGGTSAAAPLAAGVYTLLLEANPNLTWRDVQYLSILSAVGLEKNADGDWRDSAMGKKYSHR 320 (339)
T ss_dssp T------------TCEEEEECSHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHCBCCTTCGGGCCEECSSSSEEBTT
T ss_pred C------------CCccccCCCCcchHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCcccCCCCCccccccCCCCCcCCC
Confidence 5 26789999999999999999999999999999999999999999987654321 13667
Q ss_pred CCCCccCccccCCC
Q 044427 541 YGSGHINPAQAIDP 554 (734)
Q Consensus 541 ~G~G~vn~~~Al~~ 554 (734)
||||+||+.+||+.
T Consensus 321 ~G~G~ln~~~Av~~ 334 (339)
T d2id4a2 321 YGFGKIDAHKLIEM 334 (339)
T ss_dssp TBTCBCCHHHHHHH
T ss_pred ccchhhCHHHHHHH
Confidence 99999999999984
|
| >d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]
Probab=99.95 E-value=2e-29 Score=270.87 Aligned_cols=306 Identities=14% Similarity=0.082 Sum_probs=178.9
Q ss_pred cCCCCCCCCEEEEEccCCCCCCCCCCCCCCCCCCCCcccccccCCcccCceeEeeeecCCCCccccCCCCCCCCCCCChH
Q 044427 89 LSSSQEGSVIIGLLDTGIWPESASFNDKGLSPPPAKWKGICTGANFTCNNKIIGARYYNSENIYEVTDFHSPRDSEGHGT 168 (734)
Q Consensus 89 ~~~~~G~GV~VgVIDtGid~~Hp~f~~~~~~~~~~~w~~~~~~~~f~~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gHGT 168 (734)
..+++|+||+|||||||||++||+|.+. |+.. .+... ...+.|..+|+|
T Consensus 18 ~~G~tG~Gv~VaViDtGvd~~H~dl~~~--------~~~~----------------~~~~~-------~~~~~~~~g~~~ 66 (357)
T d1t1ga_ 18 PEGLDGQGQCIAIIALGGGYDETSLAQY--------FASL----------------GVSAP-------QVVSVSVDGATN 66 (357)
T ss_dssp CTTCCCTTCEEEEEESSCCCCHHHHHHH--------HHHT----------------TCCCC-------CEEEEESTTCCC
T ss_pred CCCCCCCCCEEEEEEcCCCCCcHHHHHH--------Hhhc----------------CCCCC-------CCceeCCCCCCC
Confidence 5789999999999999999999999631 1000 00000 011223456666
Q ss_pred HHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCCCCHHHHHHHHHHHHh---CCCcEEEEccCCCCCCC--
Q 044427 169 HTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDGCATADILAAFDDAIA---DGVDIISVSLGSDFPFE-- 243 (734)
Q Consensus 169 hVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g~~~~~i~~ai~~ai~---~g~dVINlSlG~~~~~~-- 243 (734)
|+++++++..... ......+.||||+|+|+.+|+... ...++.+|++++. ++++|||+|||......
T Consensus 67 ~~~g~~~~~~~~~----~~d~~~~~GvAp~A~i~~~~~~~~----~~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~~~~ 138 (357)
T d1t1ga_ 67 QPTGDPNGPDGEV----ELDIEVAGALAPGAKIAVYFAPNT----DAGFLNAITTAVHDPTHKPSIVSISWGGPEDSWAP 138 (357)
T ss_dssp CCCSCTTSTHHHH----HHHHHHHHHHSTTSEEEEEECCSS----HHHHHHHHHHHHHCTTTCCSEEEECCCEEGGGSCH
T ss_pred CCCCccccccccc----cCCcccceeecccCeEEEEecccC----CCchHHHHHHHHHhhhcCCeEEecccccCcCcccc
Confidence 6666655432110 001123489999999999999643 3445666666654 58999999999863111
Q ss_pred CCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC--------cCCCCCceEEecccccCceeEEEEEeCCCeEeeeeeccc
Q 044427 244 YFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS--------VSNFAPWTLTVAASSIDRKFVAQAVLGNGITYPGLSINS 315 (734)
Q Consensus 244 ~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~--------~~~~ap~vitVga~~~~~~~~~~~~~~~g~~~~g~~~~~ 315 (734)
.....+......+..+|+++|+|+||+|..... .+...+++++|++...... .+...
T Consensus 139 ~~~~~~~~~~~~~~~~g~~vv~aagn~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------~~~~~------- 203 (357)
T d1t1ga_ 139 ASIAAMNRAFLDAAALGVTVLAAAGDSGSTDGEQDGLYHVDFPAASPYVLACGGTRLVAS--------AGRIE------- 203 (357)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEECCSBGGGTTCCSSSCCCEETTTSTTSEEEEEEEEEEC--------SSCEE-------
T ss_pred chHHHHHHhhhhhccCCcEEEEEeccCCcccccccccccccccccCCcceeeeeecccCC--------CCccc-------
Confidence 112234555566778999999999999854322 2224577888877543210 00000
Q ss_pred CCCCCceeeeEEcCCCcccCCCCCcccccccccccCCCCCcCceEEEEeeCCcchhhhccCceEEEEecCCccCcccCcC
Q 044427 316 FDLNGISYPLIWGGDAANYSAGANPDIARFCAADALNSYKVEGKIVFCESLLDGSDILAVNGLGTIMADSVFTDLAFSYP 395 (734)
Q Consensus 316 ~~~~~~~~pl~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~gkiv~~~~~~~~~~~~~~Ga~g~i~~n~~~~~~~~~~~ 395 (734)
+......... .... ..+.-
T Consensus 204 --------~~~~~~~~~~----------~~~~-----------------------------~~g~s-------------- 222 (357)
T d1t1ga_ 204 --------RETVWNDGPD----------GGST-----------------------------GGGVS-------------- 222 (357)
T ss_dssp --------EEEECBCHHH----------HCBC-----------------------------CCEEC--------------
T ss_pred --------cceecccccc----------cccc-----------------------------cCCcc--------------
Confidence 0000000000 0000 00000
Q ss_pred cceEEeeccchHHHHHHHhcCCCcEEEEEecceeecCCCCceeeccCCCCCCCCCCCCCCcEEecCCCEee--ccCCCCC
Q 044427 396 LPATLISKENGQDILDYIRSTEYPIATIMFGETWKDAMAPKVVSFSSRGPNPITVDILKPDITAPGVDILA--SWSPVAP 473 (734)
Q Consensus 396 ~p~~~i~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~a~fSS~Gpt~~~~~~~KPDI~APG~~I~s--a~~~~~~ 473 (734)
...............+++.+++. .++.|||+.+++..... ....
T Consensus 223 -----------------------------~~~~~p~~~~~~~~~~~~~~~~~--~~~~~pd~~~~~~~~~~~~~~~~--- 268 (357)
T d1t1ga_ 223 -----------------------------RIFPLPSWQERANVPPSANPGAG--SGRGVPDVAGNADPATGYEVVID--- 268 (357)
T ss_dssp -----------------------------SSSCCCGGGTTSCCCCCSSTTCC--CCCEECSEEEECCTTEEEEEEET---
T ss_pred -----------------------------cccccCcccccccccccccCCCC--CCceecceecccCCCCceEEecC---
Confidence 00000001223566777888877 89999999999876543 3333
Q ss_pred CCCCCCCCCCcceEEeccccchhhHHHHHHHHHHhhCCC---CCHHHHHHHHHhccccccC-------C-----CcccCC
Q 044427 474 PSLDPEDTRSVSFNIISGTSMSCPHASGSAAYVKAAHPN---WSPSSIKSALMTTAYVMDS-------R-----KQEDLE 538 (734)
Q Consensus 474 ~~~~~~~~~~~~y~~~sGTSmAaP~VAG~aALl~q~~P~---ls~~~vk~~L~~TA~~~~~-------~-----~~~~~~ 538 (734)
+.|..++|||||||||||++|||+|+++. +....++.+...+.+++.. . ..+.++
T Consensus 269 ----------~~y~~~sGTSmAaP~VaG~~ALl~q~~~~~~g~~np~l~~~~~~~~~dit~g~~~~~~~~~~~~a~~G~d 338 (357)
T d1t1ga_ 269 ----------GETTVIGGTSAVAPLFAALVARINQKLGKPVGYLNPTLYQLPPEVFHDITEGNNDIANRARIYQAGPGWD 338 (357)
T ss_dssp ----------TEEEEECSGGGHHHHHHHHHHHHHHHHSSCCCCCHHHHTTSCGGGEECCCSCBCCCSSSSCCSBCCSSSB
T ss_pred ----------CceeecCCchhHHHHHHHHHHHHHhhhcCCcCccCHHHHhhcccceecccccCCCCCCCCCcccCccCCC
Confidence 78999999999999999999999998653 2233444433333332210 0 011147
Q ss_pred CCCCCCccCccccCC
Q 044427 539 FAYGSGHINPAQAID 553 (734)
Q Consensus 539 ~~~G~G~vn~~~Al~ 553 (734)
..+|||++|+.++++
T Consensus 339 ~~tG~G~~n~~~~~~ 353 (357)
T d1t1ga_ 339 PCTGLGSPIGIRLLQ 353 (357)
T ss_dssp TTTBTCEECHHHHHH
T ss_pred CCccCchhhHHHHHH
Confidence 789999999888775
|
| >d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Subtilisin-like superfamily: Subtilisin-like family: Serine-carboxyl proteinase, SCP domain: Serine-carboxyl proteinase, SCP species: Pseudomonas sp., sedolisin [TaxId: 306]
Probab=99.94 E-value=7.6e-29 Score=268.46 Aligned_cols=166 Identities=14% Similarity=0.128 Sum_probs=114.4
Q ss_pred cCCCCCCCCEEEEEccCCCCC-CCCCCCCCCCCCCCCcccccccCCcc-cCceeEeeeecCCCCccccCCCCCCCCCCCC
Q 044427 89 LSSSQEGSVIIGLLDTGIWPE-SASFNDKGLSPPPAKWKGICTGANFT-CNNKIIGARYYNSENIYEVTDFHSPRDSEGH 166 (734)
Q Consensus 89 ~~~~~G~GV~VgVIDtGid~~-Hp~f~~~~~~~~~~~w~~~~~~~~f~-~n~ki~g~~~~~~~~~~~~~~~~~~~D~~gH 166 (734)
....+|+||+|||||+|.++. |+||.. +... .+++ ++. .......+..+|
T Consensus 19 ~~~~tG~gvtVaIid~G~~~~~~~Dl~~---------f~~~---~~~~~~~~----------------~~~~~~~~~~~~ 70 (369)
T d1ga6a_ 19 SSAPTAANTTVGIITIGGVSQTLQDLQQ---------FTSA---NGLASVNT----------------QTIQTGSSNGDY 70 (369)
T ss_dssp TTSCCEEEEEEEEEEESBCHHHHHHHHH---------HHHH---TTCCCCCE----------------EEEECSCTTSCC
T ss_pred CCCCCCCCcEEEEEecCCcccCHHHHHH---------HHHh---cCCCCCCC----------------CeecCCCCCCCC
Confidence 345689999999999998764 666641 0000 0000 000 000122345689
Q ss_pred hHHHHHHhccCCCCCCccccccccceeeecCCCeEEEEEEecCCC-CCHHHHHHHHHHHHhC-CCcEEEEccCCCCC---
Q 044427 167 GTHTSSTAAGREVPHASYYGLAEGTARGGVPNARISMYKVCWSDG-CATADILAAFDDAIAD-GVDIISVSLGSDFP--- 241 (734)
Q Consensus 167 GThVAGi~AG~~~~~~~~~G~~~g~~~GvAP~A~L~~~kv~~~~g-~~~~~i~~ai~~ai~~-g~dVINlSlG~~~~--- 241 (734)
|||+++++.+... ...+.||||+|+|+.++++.+.+ ....+++++|+||+++ +++|||+|||....
T Consensus 71 ~~~~~~~~e~~ld---------~~~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~ 141 (369)
T d1ga6a_ 71 SDDQQGQGEWDLD---------SQSIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADAN 141 (369)
T ss_dssp CBCHHHHHHHHHH---------HHHHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHH
T ss_pred CCCCCcceeeccc---------cccccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCC
Confidence 9999999876531 12348999999999999998876 6678899999999964 79999999997531
Q ss_pred CCCCCCHHHHHHHHHHhCCcEEEEcCCCCCCCCCC-------------cCCCCCceEEecccc
Q 044427 242 FEYFEDPIAIGSFHAMKYGILTSNSAGNSGPDPYS-------------VSNFAPWTLTVAASS 291 (734)
Q Consensus 242 ~~~~~~~~~~a~~~a~~~Gi~vV~AAGN~G~~~~~-------------~~~~ap~vitVga~~ 291 (734)
.....+.+..++.++..+|++||+||||+|..... .+...+++++|+++.
T Consensus 142 ~~~~~~~~~~a~~~a~~~Gi~vv~AaGN~G~~~~~~~~~~~~~~~~~~~pa~~~~v~~vg~t~ 204 (369)
T d1ga6a_ 142 ADGTLQAEDRIFATAAAQGQTFSVSSGDEGVYECNNRGYPDGSTYSVSWPASSPNVIAVGGTT 204 (369)
T ss_dssp HTTHHHHHHHHHHHHHHTTCEEEEECCSBTTBTTTTTTCCCTTCCBCEETTTCTTSEEEEEEE
T ss_pred cchHHHHHHHHHHHHHHCCCEEEEeCCCCcccCcCCCCCCccccccccccccCCceeeeeeec
Confidence 12233455667778889999999999999864321 223457899998854
|
| >d1scjb_ d.58.3.2 (B:) Subtilisin prosegment {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Subtilisin prosegment species: Bacillus subtilis [TaxId: 1423]
Probab=97.83 E-value=2.5e-05 Score=61.16 Aligned_cols=45 Identities=18% Similarity=0.175 Sum_probs=40.3
Q ss_pred ccCcceEEEecceeeEEEEEeCHHHHHHHhcCCCeeEEEeCccccc
Q 044427 28 SAKESLVYSYGRSFNGFAAKLTDEEVARFSETEGVISVIPNHKLKI 73 (734)
Q Consensus 28 ~~~~~v~~~y~~~~ng~s~~~~~~~i~~L~~~p~V~~v~~~~~~~~ 73 (734)
..+.+|.++|+ .||||++++++++++.|++.|+|.+|++++.++.
T Consensus 26 ~~gg~v~~~~~-~i~gfs~~l~~~~~~~L~~~p~V~yVE~D~v~~a 70 (71)
T d1scjb_ 26 QKGGKVEKQFK-YVNAAAATLDEKAVKELKKDPSVAYVEEDHIAHE 70 (71)
T ss_dssp TTTCEEEEECS-SSSEEEEEECHHHHHHHHTSTTEEEEEECCEEEE
T ss_pred HcCCeEEEEEe-ecceEEEEeCHHHHHHHHcCCCceEEeCCcEEEc
Confidence 35678999996 7999999999999999999999999999987653
|
| >d1v5ib1 d.58.3.2 (B:1-72) Proteinase A inhibitor 1, POIA1 {Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: Protease propeptides/inhibitors family: Subtilase propeptides/inhibitors domain: Proteinase A inhibitor 1, POIA1 species: Oyster mushroom (Pleurotus ostreatus) [TaxId: 5322]
Probab=97.32 E-value=0.00015 Score=56.68 Aligned_cols=40 Identities=25% Similarity=0.541 Sum_probs=34.2
Q ss_pred CcceEEEec-ceeeEEEEEeCHHHHHHHhcCCC--eeEEEeCc
Q 044427 30 KESLVYSYG-RSFNGFAAKLTDEEVARFSETEG--VISVIPNH 69 (734)
Q Consensus 30 ~~~v~~~y~-~~~ng~s~~~~~~~i~~L~~~p~--V~~v~~~~ 69 (734)
+.++.+.|. +.|+||+++++++.++.|+++|. |.+||+++
T Consensus 29 ~~~~~~~~~~~~~~GFaa~l~e~~l~~lr~~p~~~V~yVE~D~ 71 (72)
T d1v5ib1 29 GGTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEEDH 71 (72)
T ss_dssp TCCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEECC
T ss_pred CCceEEEEeeeeeeEEEEecCHHHHHHHHhCCCCCCceECCCC
Confidence 345667776 68999999999999999999665 99999986
|
| >d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: Immunoglobulin-like beta-sandwich superfamily: E set domains family: E-set domains of sugar-utilizing enzymes domain: Sialidase, "linker" domain species: Micromonospora viridifaciens [TaxId: 1881]
Probab=96.75 E-value=0.006 Score=50.79 Aligned_cols=92 Identities=14% Similarity=0.073 Sum_probs=63.2
Q ss_pred CCCceeeeecCCCceEEEEEEEEEecCCCCee-EEEEeeCCCceEEEEEcCeeEEeeCCcEEEEEEEEEccccCCCCceE
Q 044427 602 NYPSFSLAIEDGQPIYGVFTRTVTNVGSPNST-YTVRPYMPASVSVDVEPQSLSFSAVGEQKSFTVKVTGPKIAQQPIMS 680 (734)
Q Consensus 602 n~psi~~~~~~~~~~~~~~~~tv~N~~~~~~t-y~~~v~~~~g~~v~v~p~~~~~~~~g~~~~~~vt~~~~~~~~~~~~~ 680 (734)
.-|++.+. .|. +.+++++|+|.++...+ -++.+..|+|=+++ +..+.+ ++|++++++++|+++.....+.|.
T Consensus 7 t~p~~~v~--pG~--~~~~~vtVtN~g~~~~~~~~~~~~~P~GW~v~--~~~~~L-~pG~s~~~~~~Vt~p~~a~~G~Y~ 79 (103)
T d1w8oa1 7 TIPDVALE--PGQ--QVTVPVAVTNQSGIAVPKPSLQLDASPDWQVQ--GSVEPL-MPGRQAKGQVTITVPAGTTPGRYR 79 (103)
T ss_dssp ECCCEEEC--TTC--EEEEEEEEECCSSSCBSSCEEEEECCTTSEEE--EEECCB-CTTCEEEEEEEEECCTTCCCEEEE
T ss_pred cCcceeeC--CCC--eEEEEEEEEeCCCCceeeeeEEEcCCCCcccc--Ccceee-CCCCcEEEEEEEECCCCCCCceEE
Confidence 34665543 344 78899999999987654 46677789997664 555566 689999999999998754444444
Q ss_pred EEEEEEcCceEEEeEEEEEe
Q 044427 681 GAIVWEDGVHQVRSPVVIYN 700 (734)
Q Consensus 681 G~i~~~~~~~~v~~P~~~~~ 700 (734)
=.+..+.+....+..+-+..
T Consensus 80 i~~~a~~~~~~~s~t~tvtV 99 (103)
T d1w8oa1 80 VGATLRTSAGNASTTFTVTV 99 (103)
T ss_dssp EEEEEEETTEEEEEEEEEEE
T ss_pred EEEEEEeCCcceEEEEEEEE
Confidence 45666655555555555544
|
| >d1de4c2 c.8.4.1 (C:190-382) Transferrin receptor ectodomain, apical domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: The "swivelling" beta/beta/alpha domain superfamily: PA domain family: PA domain domain: Transferrin receptor ectodomain, apical domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.30 E-value=0.19 Score=45.90 Aligned_cols=35 Identities=17% Similarity=0.196 Sum_probs=30.0
Q ss_pred CCCcCceEEEEeeCC-----cchhhhccCceEEEEecCCc
Q 044427 353 SYKVEGKIVFCESLL-----DGSDILAVNGLGTIMADSVF 387 (734)
Q Consensus 353 ~~~~~gkiv~~~~~~-----~~~~~~~~Ga~g~i~~n~~~ 387 (734)
..+++|||+|++++. |..+|+.+||+|+|+|.+..
T Consensus 58 ~~~v~GkI~l~r~G~~~~~~Kv~~A~~~GA~gviiysDp~ 97 (193)
T d1de4c2 58 YTPVNGSIVIVRAGKITFAEKVANAESLNAIGVLIYMDQT 97 (193)
T ss_dssp SSCCTTSEEEEESCSSCHHHHHHHHHHTTCCCEEEECCTT
T ss_pred ccccCceEEEEeCCCCCHHHHHHHHHHcCceEEEEecCcc
Confidence 357999999999875 48899999999999998753
|