Citrus Sinensis ID: 044433

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MVSADYETRLlaeplddyshassricglSSDVIEEFLERRRVAFrwwprlfgwESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAaviptflywysgptlramgqsesIAEQGQIFARGLIPQIYAFAlscpmqrfrqAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVlspscketwtglsvkaftgicpyFKLTVASAVMLWFVqilpplifsv
Flexible Loop (DISEMBL)
MVSADYETRLLaeplddyshassrICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Low Complexity Region (SEG)
MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Disordered region (IsUnstruct)
*****************YSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIF**
Disordered Region (DISOPRED)
********************************************RWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Disordered Region (DISEMBL)
MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Disordered Region (DISPRO)
********************************IEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQILPPLIFSV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
Q9LYT3	507	Protein TRANSPARENT TESTA	yes	no	0.930	0.556	0.711	1e-115
Q9SIA1	477	MATE efflux family protei	no	no	0.844	0.536	0.316	1e-30
Q8RWF5	483	MATE efflux family protei	no	no	0.732	0.459	0.346	6e-30
Q9SIA3	476	MATE efflux family protei	no	no	0.755	0.481	0.330	6e-29
Q9SIA5	476	MATE efflux family protei	no	no	0.755	0.481	0.313	3e-28
Q8GXM8	476	MATE efflux family protei	no	no	0.755	0.481	0.326	5e-28
Q9SIA4	476	MATE efflux family protei	no	no	0.755	0.481	0.334	2e-27
Q9LUH2	477	MATE efflux family protei	no	no	0.755	0.480	0.299	2e-27
Q9LUH3	469	MATE efflux family protei	no	no	0.900	0.582	0.268	6e-27
A1L1P9	590	Multidrug and toxin extru	no	no	0.877	0.450	0.265	6e-17

>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1

 Score =  415 bits (1066), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 236/288 (81%), Gaps = 6/288 (2%)

Query: 13  EPLDDYSHASSRICGLSSDVIEEFLERR--RVAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           EPL    H+ S+I   SS  IEEFL RR   V  RWW +L  WES+LLW LSGASIVVS+
Sbjct: 8   EPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSV 67

Query: 71  FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
            NYML+FVT+MFTGHLG+L+LAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGA++Y+
Sbjct: 68  LNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYS 127

Query: 131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
           +MGIICQRAMVLHL AAV  TFLYWYSGP L+ MGQS +IA +GQIFARG+IPQIYAFAL
Sbjct: 128 SMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFAL 187

Query: 191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
           +CPMQRF QAQNIVNPLA M+ G FLLH +LTW+   VL FGL+G AL LS SWW LV +
Sbjct: 188 ACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAV 247

Query: 251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           N +YI++SP+CKETWTG S +AF GI PYFKLTVASAVML    W+ Q
Sbjct: 248 NGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQ 295

May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2

 Score =  133 bits (335), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 81/256 (31%), Positives = 136/256 (53%)

Query: 34  EEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAG 93
           ++ + R   +   W   F  E + +  ++     V++  Y+L  +++M  GH G L+L+G
Sbjct: 10  DQLITRNLKSTPTWWMNFTAELKNVSSMAAPMATVTVSQYLLPVISVMVAGHCGELQLSG 69

Query: 94  ASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFL 153
            ++A+       +GIM G+  A++T+CGQAYGAK+Y  +G     A+V ++   V+ + L
Sbjct: 70  VTLATAFANVSGFGIMYGLVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISIL 129

Query: 154 YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAG 213
           ++Y      ++GQ   I++    +A  LIP + A A+  P+ RF Q Q +V PL   A  
Sbjct: 130 WFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAIT 189

Query: 214 AFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAF 273
             L HI +  I VY    G  G AL + LS+WF V+I ALY+  S +C++T   +S    
Sbjct: 190 TLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFV 249

Query: 274 TGICPYFKLTVASAVM 289
             +  +F+  + SA M
Sbjct: 250 LSVKQFFQYGIPSAAM 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1

 Score =  131 bits (330), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 77/222 (34%), Positives = 124/222 (55%)

Query: 68  VSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAK 127
           V++  Y+L  +++M  GH   L+L+G ++A+       + +M G+A A++T+CGQAYGAK
Sbjct: 44  VTVAQYLLPVISVMVAGHRSELQLSGVALATSFTNVSGFSVMFGLAGALETLCGQAYGAK 103

Query: 128 KYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYA 187
           +YA +G     A+V ++   V+ + L++Y      ++GQ   I++    +A  LIP + A
Sbjct: 104 QYAKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDISKVAGSYAVCLIPALLA 163

Query: 188 FALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFL 247
            A+  P+ RF Q Q +V PL   A    L HI +  I VY    G  G AL + LS+WF 
Sbjct: 164 QAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGLGSNGAALAIGLSYWFN 223

Query: 248 VIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVM 289
           V+I ALY+  S SC++T   +S      +  +F+  + SA M
Sbjct: 224 VLILALYVRFSSSCEKTRGFVSDDFVLSVKQFFQYGIPSAAM 265

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2

 Score =  128 bits (321), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 4/233 (1%)

Query: 68  VSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAK 127
           V+I  Y+L  +++M  GH G L+L+G ++A+       + IM G+  +++T+ GQAYGAK
Sbjct: 41  VTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSIMFGLVGSLETLSGQAYGAK 100

Query: 128 KYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYA 187
           +Y  MG     A+  ++   V+ + L+ Y    L ++GQ   I+     +A  LIP ++A
Sbjct: 101 QYEKMGTYTYSAISSNIPICVLISILWIYMEKLLISLGQDPDISRVAGSYALRLIPTLFA 160

Query: 188 FALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFL 247
            A+  P+ RF  AQ +V PL   A    L HI + W  V  L  G  G AL +S+S+WF 
Sbjct: 161 HAIVLPLTRFLLAQGLVLPLLYFALTTLLFHIAVCWTLVSALGLGSNGAALAISVSFWFF 220

Query: 248 VIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
            +  + Y+  S SC++T   +S    + +  +F+  V SA ML    W  ++L
Sbjct: 221 AMTLSCYVRFSSSCEKTRRFVSQDFLSSVKQFFRYGVPSAAMLCLEWWLFELL 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1

 Score =  125 bits (315), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 73/233 (31%), Positives = 125/233 (53%), Gaps = 4/233 (1%)

Query: 68  VSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAK 127
           V+I  Y+L  +++M  GH G L+L+G ++A+       + IM G+  A++T+CGQAYGAK
Sbjct: 41  VTIAQYLLPVISVMVAGHNGELQLSGVALANSFTNVTGFSIMCGLVGALETLCGQAYGAK 100

Query: 128 KYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYA 187
           +Y  +G     A+  ++    + + L+ Y    L ++GQ   I+     +A  LIP ++ 
Sbjct: 101 QYEKIGTYAYSAIASNIPICFLISILWLYIEKILISLGQDPEISRIAGSYAFWLIPALFG 160

Query: 188 FALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFL 247
            A+  P+ RF   Q +V PL   A    L H+++ W  V++   G  G A+  S+S+WF 
Sbjct: 161 QAIVIPLSRFLLTQGLVIPLLFTAVTTLLFHVLVCWTLVFLFGLGCNGPAMATSVSFWFY 220

Query: 248 VIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
            +I + Y+  S SC++T   +S    + I  +F+  + SA M+    W  +IL
Sbjct: 221 AVILSCYVRFSSSCEKTRGFVSRDFVSSIKQFFQYGIPSAAMICLEWWLFEIL 273

Efflux carrier for plant-derived alkaloids, antibiotics, heavy metal and other toxic compounds. Involved in cadmium detoxification. Requires probably a proton-motive force for the efflux.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1

 Score =  125 bits (313), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 125/233 (53%), Gaps = 4/233 (1%)

Query: 68  VSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAK 127
           V+I  Y+L  +++M  GH+G LELAG ++A+       + IM G+  A++T+CGQAYGA+
Sbjct: 41  VTIAQYLLPVISVMVAGHIGELELAGVALATSFTNVSGFSIMFGLVGALETLCGQAYGAE 100

Query: 128 KYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYA 187
           +Y  +G     AM  ++    I + L+ Y    L  +GQ   I+     ++  L+P ++A
Sbjct: 101 QYEKIGTYTYSAMASNIPICFIISILWIYIEKLLITLGQEPDISRVAGSYSLWLVPALFA 160

Query: 188 FALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFL 247
            A+  P+ RF  AQ +V  L   A    L HI + W  V+ L  G  G A+ +SLS+WF 
Sbjct: 161 HAIFLPLTRFLLAQGLVISLLYSAMTTLLFHIAVCWTLVFALGLGSNGAAIAISLSFWFY 220

Query: 248 VIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
            +I + ++    SC++T   +S    + I  YF+  V SA ++    W  ++L
Sbjct: 221 AVILSCHVRFFSSCEKTRGFVSNDFMSSIKQYFQYGVPSAGLICLEWWLFELL 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/233 (33%), Positives = 124/233 (53%), Gaps = 4/233 (1%)

Query: 68  VSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAK 127
           V+I  Y+L  +++M  GH G L+L+G ++A+       + I+ G+A A++T+CGQAYGAK
Sbjct: 41  VTIAQYLLPVISVMVAGHNGELQLSGVALATSFTNVSGFSILFGLAGALETLCGQAYGAK 100

Query: 128 KYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYA 187
           +Y  +G     A   ++   V+ + L+ Y    L ++GQ   I+     +A  LIP ++A
Sbjct: 101 QYEKIGTYTYSATASNIPICVLISVLWIYIEKLLISLGQDPDISRVAGSYALWLIPALFA 160

Query: 188 FALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFL 247
            A   P+ RF  AQ +V PL        L HI + W  VY    G  G A+ +S+S+WF 
Sbjct: 161 HAFFIPLTRFLLAQGLVLPLLYCTLTTLLFHIPVCWAFVYAFGLGSNGAAMAISVSFWFY 220

Query: 248 VIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
           V+I + Y+  S SC +T   +S    + I  +F   V SA M+    W  ++L
Sbjct: 221 VVILSCYVRYSSSCDKTRVFVSSDFVSCIKQFFHFGVPSAAMVCLEWWLFELL 273

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1

 Score =  122 bits (307), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 133/237 (56%), Gaps = 8/237 (3%)

Query: 66  IVVSIFNYMLTFVTLMFTGHLGALELAGASIAS--VGIQGLAYGIMLGMASAVQTICGQA 123
           I+ ++F Y +   ++MF  HLG LELAGA++A+    + G A+  M+G++ +++T+CGQ 
Sbjct: 51  ILTNVFYYCIPITSVMFASHLGQLELAGATLANSWATVSGFAF--MVGLSGSLETLCGQG 108

Query: 124 YGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIP 183
           +GAK+Y  +G+  Q + ++ L  +++ T  ++++      + Q  SI++Q  ++ +   P
Sbjct: 109 FGAKRYRMLGVHLQSSCIVSLVFSILITIFWFFTESIFGLLRQDPSISKQAALYMKYQAP 168

Query: 184 QIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLS 243
            + A+     + RF Q Q+I+ PL   +    +++I   ++ VYV   G +G  +  S+S
Sbjct: 169 GLLAYGFLQNILRFCQTQSIIAPLVIFSFVPLVINIATAYVLVYVAGLGFIGAPIATSIS 228

Query: 244 WWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
            W   +    Y++ S   KETWTG S+++F  I     L++ SA M+    W  +IL
Sbjct: 229 LWIAFLSLGTYVMCSEKFKETWTGFSLESFRYIVINLTLSLPSAAMVCLEYWAFEIL 285

Required for protection of the roots from inhibitory compounds. When expressed in an heterologous system, confers resistance to tetramethylammonium chloride.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1

 Score =  121 bits (304), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 143/290 (49%), Gaps = 17/290 (5%)

Query: 11  LAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           +A+P     H        SS  +++ ++               E++   + S   I  ++
Sbjct: 1   MADPTSKDDHDGEGGRDKSSTFVQKLIDVE-------------EAKTQIIYSLPMIFTNL 47

Query: 71  FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
           F Y +   ++MF   LG LELAGA++A+       +  M G++ A++T+CGQ +GAK Y 
Sbjct: 48  FYYCIPLTSVMFASQLGQLELAGATLANSWATVTGFAFMTGLSGALETLCGQGFGAKSYR 107

Query: 131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
            +GI  Q + ++ L   ++ T L++++      + Q  SI++Q  ++ + L P + A+  
Sbjct: 108 MLGIHLQSSCIVSLVFTILITILWFFTESVFLLLRQDPSISKQAALYMKYLAPGLLAYGF 167

Query: 191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
              + RF Q Q IV PL   +    +++I  T+  V++   G +G  +  S+S W   + 
Sbjct: 168 LQNILRFCQTQCIVTPLVLFSFLPLVINIGTTYALVHLAGLGFIGAPIATSISLWIAFVS 227

Query: 251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQIL 296
              Y++ S   KETWTG S+++F  +     L++ SA M+    W  +IL
Sbjct: 228 LGFYVICSDKFKETWTGFSMESFHHVVLNLTLSIPSAAMVCLEYWAFEIL 277

Arabidopsis thaliana (taxid: 3702)

>sp|A1L1P9|S47A1_DANRE Multidrug and toxin extrusion protein 1 OS=Danio rerio GN=slc47a1 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/282 (26%), Positives = 133/282 (47%), Gaps = 16/282 (5%)

Query: 13  EPLDDYSHASS--RICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           E  DD    SS  + CG     +   L          P  +  E   L  L+G   +  +
Sbjct: 19  EKCDDVLSTSSTQKFCGGCRKKLRSLL----------PVNYKTEIVELLKLAGPVFISQL 68

Query: 71  FNYMLTFVTLMFTGHLGALELAGA--SIASVGIQGLAYGIMLGMASAVQTICGQAYGAKK 128
             ++++FV+ +F GHLG  ELAG   +IA + + G++ G   G+ASA  T+  Q +G+  
Sbjct: 69  MIFLISFVSTVFCGHLGKTELAGVALAIAVINVTGISIGS--GLASACDTLISQTFGSNN 126

Query: 129 YAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAF 188
              +G+I QR +++ L A      L   + P L A+ QS ++A   Q++ +  +P + A 
Sbjct: 127 LKRVGVILQRGILILLLACFPCWALLINTEPILLAVRQSPNVASLSQLYVKIFMPALPAA 186

Query: 189 ALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLV 248
            +     R+ Q Q I+ P     A   +L+ ++ ++ +++L+ G+ G A   ++S + L 
Sbjct: 187 FMYQLQGRYLQNQGIIWPQVITGAAGNILNALINYVFLHLLELGVAGSAAANTISQYSLA 246

Query: 249 IINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290
           +   +YI      K TW G S         + +L + S +ML
Sbjct: 247 VFLYVYIRWKNLHKATWDGWSRDCLQEWGAFIRLALPSMLML 288

Solute transporter for tetraethylammonium (TEA), cimetidine, metformin, guanidine, N-methylnicotinamide (NMN) and also the zwitterionic cephalosporin cephalexin. Responsible for the secretion of cationic drugs across the brush border membranes.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
442558067	506	TT12a [Gossypium arboreum]	0.957	0.573	0.755	1e-122
225446759	504	PREDICTED: protein TRANSPARENT TESTA 12	0.950	0.571	0.755	1e-122
224062585	503	predicted protein [Populus trichocarpa]	0.900	0.542	0.772	1e-121
356553625	505	PREDICTED: protein TRANSPARENT TESTA 12-	0.937	0.562	0.722	1e-117
224085427	505	predicted protein [Populus trichocarpa]	0.943	0.566	0.736	1e-116
224085425	505	predicted protein [Populus trichocarpa]	0.943	0.566	0.736	1e-116
212641724	507	transparent testa 12 isoform 2 [Brassica	0.930	0.556	0.718	1e-114
212641731	507	transparent testa 12 [Brassica rapa subs	0.930	0.556	0.715	1e-114
308220270	514	TT12-2 MATE transporter [Malus x domesti	0.930	0.548	0.713	1e-114
15231620	507	protein TRANSPARENT TESTA 12 [Arabidopsi	0.930	0.556	0.711	1e-113

>gi|442558067|gb|AGC55236.1| TT12a [Gossypium arboreum]

 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/298 (75%), Positives = 256/298 (85%), Gaps = 8/298 (2%)

Query: 1   MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWL 60
           M SA  E + L   LD +S    RI  LSS  IEEFL+ R +A RWWPRL  WESRLLWL
Sbjct: 1   MGSAAPEYQPLLLGLDSHS----RIPDLSSVAIEEFLQHRPIALRWWPRLVAWESRLLWL 56

Query: 61  LSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTIC 120
           LSG+SIV+SIFNYML+FVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQT+C
Sbjct: 57  LSGSSIVLSIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVC 116

Query: 121 GQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARG 180
           GQAYGAK+Y+AMGIICQRA++LHLGAAV+ TFLYW+SG  L+A+GQ+ESIA+QGQ+F+RG
Sbjct: 117 GQAYGAKQYSAMGIICQRAIILHLGAAVLLTFLYWFSGDVLQAIGQTESIAQQGQVFSRG 176

Query: 181 LIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTL 240
           LIPQIYAFA+SCPMQRF QAQNIVNPLA M+ G FL+H++LTW+ V VL  GL+G ALTL
Sbjct: 177 LIPQIYAFAISCPMQRFLQAQNIVNPLAFMSIGIFLVHVLLTWLVVNVLGCGLLGAALTL 236

Query: 241 SLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           SLSWWFLV+IN LYIVLSPSCKETW+GLS +AFTGI PYFKLTVASAVML    W+ Q
Sbjct: 237 SLSWWFLVVINGLYIVLSPSCKETWSGLSFRAFTGIWPYFKLTVASAVMLCLEIWYNQ 294

Source: Gossypium arboreum

Species: Gossypium arboreum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446759|ref|XP_002282932.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] gi|302143501|emb|CBI22062.3| unnamed protein product [Vitis vinifera]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 225/298 (75%), Positives = 251/298 (84%), Gaps = 10/298 (3%)

Query: 1   MVSADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWL 60
           M S +Y+  LL       SHA  RI  LSS  +EEFL  + VA RWWPRLFGWESRLLWL
Sbjct: 1   MGSEEYQPLLLGLN----SHA--RIPDLSSFAVEEFLAHKPVAVRWWPRLFGWESRLLWL 54

Query: 61  LSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTIC 120
           LSG+SIV SIFNYML+FVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQT+C
Sbjct: 55  LSGSSIVASIFNYMLSFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTVC 114

Query: 121 GQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARG 180
           GQAYGAKKY AMGIICQRA++LHLGAAV+ TFLYW+SGP LRA+GQS+SI+ QGQIFARG
Sbjct: 115 GQAYGAKKYKAMGIICQRAIILHLGAAVLLTFLYWFSGPFLRAIGQSDSISAQGQIFARG 174

Query: 181 LIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTL 240
           LI Q+YAFA+SCPMQRF QAQNIVNPLA MA G F LH++LTW+ VYVL +GL+G ALTL
Sbjct: 175 LILQLYAFAISCPMQRFLQAQNIVNPLAYMAVGVFFLHVLLTWLVVYVLDYGLLGAALTL 234

Query: 241 SLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           S SWW LV++ ALYI+LSPSCKETWTG S KAF G+ PYFKLTVASAVML    W+ Q
Sbjct: 235 SFSWWILVVVIALYILLSPSCKETWTGFSSKAFKGMWPYFKLTVASAVMLCLEIWYNQ 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224062585|ref|XP_002300856.1| predicted protein [Populus trichocarpa] gi|222842582|gb|EEE80129.1| predicted protein [Populus trichocarpa]

 Score =  440 bits (1132), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 214/277 (77%), Positives = 243/277 (87%), Gaps = 4/277 (1%)

Query: 22  SSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLM 81
            SR+  LSS  IEEFLE   V FRWWPRL  WESR+LWLLSG+SI+VS+  +ML+FVT M
Sbjct: 15  DSRLTDLSSGAIEEFLEHGPVPFRWWPRLVAWESRVLWLLSGSSIIVSVATFMLSFVTQM 74

Query: 82  FTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMV 141
           F+GHLGALELAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGAKKY++MGIICQ+A++
Sbjct: 75  FSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQAYGAKKYSSMGIICQKAII 134

Query: 142 LHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQ 201
           LHLGAA + TFLYW+SGP LR +GQS+SIAEQGQIFARGLIPQ+YAFALSCPMQRF QAQ
Sbjct: 135 LHLGAAFLLTFLYWFSGPVLRGIGQSDSIAEQGQIFARGLIPQLYAFALSCPMQRFLQAQ 194

Query: 202 NIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSC 261
           NIVNPLA M+ G FLLHI+L+WI VYVL++GL+G ALTLS SWW  VIINALYIVLSPSC
Sbjct: 195 NIVNPLAYMSVGVFLLHILLSWIVVYVLEYGLLGAALTLSFSWWLFVIINALYIVLSPSC 254

Query: 262 KETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           KETWTGLS+ AFTGI PYFKLTV+SAVML    W+ Q
Sbjct: 255 KETWTGLSISAFTGIWPYFKLTVSSAVMLCLEIWYSQ 291

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553625|ref|XP_003545155.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max]

 Score =  427 bits (1097), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 211/292 (72%), Positives = 243/292 (83%), Gaps = 8/292 (2%)

Query: 7   ETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASI 66
           E + L   LD +SH    I  LSSD IEEFLE R +A RWW +L  WESRLLWLLSGASI
Sbjct: 5   EHQPLLPRLDSHSH----IQNLSSDAIEEFLEHRPIALRWWSKLIVWESRLLWLLSGASI 60

Query: 67  VVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGA 126
           VVSIFNYML+FVTLMFTGHLG+LELAGAS+ASVGIQGLAYGIMLGMASAVQT+CGQAYGA
Sbjct: 61  VVSIFNYMLSFVTLMFTGHLGSLELAGASVASVGIQGLAYGIMLGMASAVQTVCGQAYGA 120

Query: 127 KKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIY 186
           KK+ AM II QRA++LH+GAAVI +FLYW+SG  L+A+GQS+SIAE+GQ+FARG+I Q+Y
Sbjct: 121 KKHGAMSIILQRAIILHIGAAVILSFLYWFSGDFLKAIGQSDSIAERGQVFARGIILQLY 180

Query: 187 AFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWF 246
           AFA+SCPMQRF QAQNIVNPLA M+ G FL+HI+L+W+ +YVL +GL G ALTLS SWW 
Sbjct: 181 AFAISCPMQRFLQAQNIVNPLAYMSVGVFLVHILLSWLVIYVLGYGLQGAALTLSFSWWL 240

Query: 247 LVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           LV+ N LYI+ SP CKETW G SVKAF GI PYFKLTVASAVML    W+ Q
Sbjct: 241 LVLFNGLYIIFSPRCKETWAGFSVKAFKGIWPYFKLTVASAVMLCLEVWYNQ 292

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085427|ref|XP_002307572.1| predicted protein [Populus trichocarpa] gi|222857021|gb|EEE94568.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/296 (73%), Positives = 250/296 (84%), Gaps = 10/296 (3%)

Query: 3   SADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLS 62
            ++Y+T LL   LD +S    RI  LSS  IEEFLE   VA RWWPRL  WESRLLW+LS
Sbjct: 4   ESEYQTPLL--ELDSHS----RIRDLSSVTIEEFLEHGPVAVRWWPRLVAWESRLLWILS 57

Query: 63  GASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQ 122
           G+SI+VS+  +ML+FVT MF+GHLGALELAGASIA+VGIQGLAYGIMLGMASAVQT+CGQ
Sbjct: 58  GSSIIVSVSTFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQ 117

Query: 123 AYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLI 182
           AYGAKKY++MGIICQRA++LHLGAA + TFLYW+SGP LRA+GQ+ESIAEQG+IFARGLI
Sbjct: 118 AYGAKKYSSMGIICQRAIILHLGAAFLLTFLYWFSGPVLRAIGQTESIAEQGEIFARGLI 177

Query: 183 PQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSL 242
           PQ+YAFA SCPMQRF QAQNIVNPLA M+   FLLHI+LTWI VYVL++GL+G ALTLS 
Sbjct: 178 PQLYAFAFSCPMQRFLQAQNIVNPLAYMSVAVFLLHILLTWIVVYVLQYGLLGAALTLSF 237

Query: 243 SWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           SWW  VI+N LYI+LSPSCKETWTGLS  AFTGI PYFKLTV+SAVML    W+ Q
Sbjct: 238 SWWLFVILNGLYIILSPSCKETWTGLSASAFTGIWPYFKLTVSSAVMLCLEIWYSQ 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085425|ref|XP_002307571.1| predicted protein [Populus trichocarpa] gi|222857020|gb|EEE94567.1| predicted protein [Populus trichocarpa]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 218/296 (73%), Positives = 250/296 (84%), Gaps = 10/296 (3%)

Query: 3   SADYETRLLAEPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLS 62
            ++Y+T LL   LD +S    RI  LSS  IEEFLE   VA RWWPRL  WESRLLW+LS
Sbjct: 4   ESEYQTPLL--ELDSHS----RIRDLSSVTIEEFLEHGPVAVRWWPRLVAWESRLLWILS 57

Query: 63  GASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQ 122
           G+SI+VS+  +ML+FVT MF+GHLGALELAGASIA+VGIQGLAYGIMLGMASAVQT+CGQ
Sbjct: 58  GSSIIVSVSTFMLSFVTQMFSGHLGALELAGASIANVGIQGLAYGIMLGMASAVQTVCGQ 117

Query: 123 AYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLI 182
           AYGAKKY++MGIICQRA++LHLGAA + TFLYW+SGP LRA+GQ+ESIAEQG+IFARGLI
Sbjct: 118 AYGAKKYSSMGIICQRAIILHLGAAFLLTFLYWFSGPVLRAIGQTESIAEQGEIFARGLI 177

Query: 183 PQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSL 242
           PQ+YAFA SCPMQRF QAQNIVNPLA M+   FLLHI+LTWI VYVL++GL+G ALTLS 
Sbjct: 178 PQLYAFAFSCPMQRFLQAQNIVNPLAYMSVAVFLLHILLTWIVVYVLQYGLLGAALTLSF 237

Query: 243 SWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           SWW  VI+N LYI+LSPSCKETWTGLS  AFTGI PYFKLTV+SAVML    W+ Q
Sbjct: 238 SWWLFVILNGLYIILSPSCKETWTGLSASAFTGIWPYFKLTVSSAVMLCLEIWYSQ 293

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212641724|gb|ACJ36211.1| transparent testa 12 isoform 2 [Brassica napus] gi|212641728|gb|ACJ36212.1| transparent testa 12 isoform 2 [Brassica napus]

 Score =  417 bits (1072), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/288 (71%), Positives = 237/288 (82%), Gaps = 6/288 (2%)

Query: 13  EPLDDYSHASSRICGLSSDVIEEFLERRR--VAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           EPL    H+ S+I   SS  IEEFL R R  V  RWW RLF WES+LLW LSGASIVVS+
Sbjct: 8   EPLLRRLHSDSQITERSSPEIEEFLGRGRSTVTPRWWLRLFVWESKLLWKLSGASIVVSV 67

Query: 71  FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
            NYML+FVT+MFTGHLG+LELAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGA++Y+
Sbjct: 68  LNYMLSFVTVMFTGHLGSLELAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYS 127

Query: 131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
           +MGIICQRAMVLHL AAV+ TFLYWYSGP L+AMGQ+ +IA +GQ+FARG+IPQIYAFAL
Sbjct: 128 SMGIICQRAMVLHLAAAVLLTFLYWYSGPILKAMGQTVAIAHEGQVFARGMIPQIYAFAL 187

Query: 191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
           +CPMQRF QAQNIVNPLA M+ G FLLH +LTW+   VL FGL+G AL LS SWW L  +
Sbjct: 188 ACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLAAV 247

Query: 251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           N LYIV+SPSC+ETWTG S +A TGI PY KLTVASAVML    W+ Q
Sbjct: 248 NGLYIVMSPSCRETWTGFSARALTGIWPYLKLTVASAVMLCLEIWYNQ 295

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212641731|gb|ACJ36213.1| transparent testa 12 [Brassica rapa subsp. oleifera] gi|212641734|gb|ACJ36214.1| transparent testa 12 [Brassica rapa subsp. oleifera]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 206/288 (71%), Positives = 237/288 (82%), Gaps = 6/288 (2%)

Query: 13  EPLDDYSHASSRICGLSSDVIEEFLERRR--VAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           EPL    H+ S+I   SS  IEEFL R R  V  RWW RLF WES+LLW LSGASIVVS+
Sbjct: 8   EPLLRRLHSDSQITERSSPEIEEFLGRGRSTVTPRWWLRLFVWESKLLWKLSGASIVVSV 67

Query: 71  FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
            NYML+FVT+MFTGHLG+LELAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGA++Y+
Sbjct: 68  LNYMLSFVTVMFTGHLGSLELAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYS 127

Query: 131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
           +MGIICQRAMVLHL AAV+ TFLYWYSGP L+AMGQ+ +IA +GQ+FARG+IPQIYAFAL
Sbjct: 128 SMGIICQRAMVLHLAAAVLLTFLYWYSGPILKAMGQTVAIAHEGQVFARGMIPQIYAFAL 187

Query: 191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
           +CPMQRF QAQNIVNPLA M+ G FLLH +LTW+   VL FGL+G AL LS SWW L  +
Sbjct: 188 ACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLAAV 247

Query: 251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           N LYIV+SP+C+ETWTG S +A TGI PY KLTVASAVML    W+ Q
Sbjct: 248 NGLYIVMSPNCRETWTGFSARALTGIWPYLKLTVASAVMLCLEIWYNQ 295

Source: Brassica rapa subsp. oleifera

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|308220270|gb|ADO22711.1| TT12-2 MATE transporter [Malus x domestica] gi|308220272|gb|ADO22712.1| TT12-2 MATE transporter [Malus x domestica]

 Score =  416 bits (1068), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 204/286 (71%), Positives = 237/286 (82%), Gaps = 4/286 (1%)

Query: 13  EPLDDYSHASSRICGLSSDVIEEFLERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFN 72
           +PL +   + SRI  LSS  +EEFLE + VA RWW RL  WESRLLW LSG+SI+VSIFN
Sbjct: 8   QPLLNGLDSHSRIPDLSSTAVEEFLEHKPVAVRWWLRLVAWESRLLWTLSGSSIIVSIFN 67

Query: 73  YMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM 132
           YML+F TLMF GHL ALELAGASIASVGIQGLAYGIMLGMASAVQT+CGQAYGA++Y AM
Sbjct: 68  YMLSFTTLMFCGHLSALELAGASIASVGIQGLAYGIMLGMASAVQTVCGQAYGARQYPAM 127

Query: 133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSC 192
           GIICQRA+VLHLGAAV+ TFLYW+SGP L A+GQ+E IAEQGQ+FARG++PQ+YAFA++C
Sbjct: 128 GIICQRAIVLHLGAAVLLTFLYWWSGPILIAIGQTEEIAEQGQVFARGIVPQLYAFAINC 187

Query: 193 PMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINA 252
           P QRF QAQNIVNPLA M+ G FL+HI+L+W+ VYV  +GL G ALTLS SWW LVI+  
Sbjct: 188 PQQRFLQAQNIVNPLAFMSFGVFLVHILLSWVVVYVADYGLTGAALTLSFSWWLLVIVYG 247

Query: 253 LYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           +YIV+SP CKETWTG S KA  GI PYFKLTVASA+ML    W+ Q
Sbjct: 248 IYIVVSPKCKETWTGFSGKALWGIWPYFKLTVASAIMLCLEIWYSQ 293

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231620|ref|NP_191462.1| protein TRANSPARENT TESTA 12 [Arabidopsis thaliana] gi|27151710|sp|Q9LYT3.1|TT12_ARATH RecName: Full=Protein TRANSPARENT TESTA 12; AltName: Full=MATE efflux family protein TT12; AltName: Full=Protein DTX41 gi|7529746|emb|CAB86931.1| putative protein [Arabidopsis thaliana] gi|13624643|emb|CAC36941.1| multidrug transporter-like protein [Arabidopsis thaliana] gi|21618298|gb|AAM67348.1| unknown [Arabidopsis thaliana] gi|332646342|gb|AEE79863.1| protein TRANSPARENT TESTA 12 [Arabidopsis thaliana]

 Score =  415 bits (1066), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 205/288 (71%), Positives = 236/288 (81%), Gaps = 6/288 (2%)

Query: 13  EPLDDYSHASSRICGLSSDVIEEFLERR--RVAFRWWPRLFGWESRLLWLLSGASIVVSI 70
           EPL    H+ S+I   SS  IEEFL RR   V  RWW +L  WES+LLW LSGASIVVS+
Sbjct: 8   EPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSV 67

Query: 71  FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
            NYML+FVT+MFTGHLG+L+LAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGA++Y+
Sbjct: 68  LNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYS 127

Query: 131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
           +MGIICQRAMVLHL AAV  TFLYWYSGP L+ MGQS +IA +GQIFARG+IPQIYAFAL
Sbjct: 128 SMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFAL 187

Query: 191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
           +CPMQRF QAQNIVNPLA M+ G FLLH +LTW+   VL FGL+G AL LS SWW LV +
Sbjct: 188 ACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAV 247

Query: 251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
           N +YI++SP+CKETWTG S +AF GI PYFKLTVASAVML    W+ Q
Sbjct: 248 NGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQ 295

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2077725	507	TT12 "AT3G59030" [Arabidopsis	0.930	0.556	0.711	9.2e-107
TAIR|locus:2089955	506	AT3G21690 "AT3G21690" [Arabido	0.801	0.480	0.481	1.3e-61
TAIR|locus:2036848	501	AT1G61890 "AT1G61890" [Arabido	0.801	0.485	0.421	6.1e-55
TAIR|locus:2027322	503	AT1G11670 "AT1G11670" [Arabido	0.801	0.483	0.392	3.1e-51
TAIR|locus:2015368	484	AT1G47530 "AT1G47530" [Arabido	0.834	0.522	0.399	1.6e-47
TAIR|locus:2144421	498	AT5G38030 "AT5G38030" [Arabido	0.788	0.479	0.4	2e-47
TAIR|locus:2088822	500	AT3G26590 "AT3G26590" [Arabido	0.795	0.482	0.380	1.6e-45
TAIR|locus:2168210	486	AT5G65380 "AT5G65380" [Arabido	0.795	0.495	0.403	7.1e-45
TAIR|locus:2010401	522	RSH2 "AT1G12950" [Arabidopsis	0.815	0.473	0.376	1.9e-44
TAIR|locus:2156737	486	AT5G52450 "AT5G52450" [Arabido	0.782	0.487	0.409	7.3e-43

TAIR|locus:2077725 TT12 "AT3G59030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1056 (376.8 bits), Expect = 9.2e-107, P = 9.2e-107
 Identities = 205/288 (71%), Positives = 236/288 (81%)

Query:    13 EPLDDYSHASSRICGLSSDVIEEFLERR--RVAFRWWPRLFGWESRLLWLLSGASIVVSI 70
             EPL    H+ S+I   SS  IEEFL RR   V  RWW +L  WES+LLW LSGASIVVS+
Sbjct:     8 EPLLTRLHSDSQITERSSPEIEEFLRRRGSTVTPRWWLKLAVWESKLLWTLSGASIVVSV 67

Query:    71 FNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA 130
              NYML+FVT+MFTGHLG+L+LAGASIA+VGIQGLAYGIMLGMASAVQT+CGQAYGA++Y+
Sbjct:    68 LNYMLSFVTVMFTGHLGSLQLAGASIATVGIQGLAYGIMLGMASAVQTVCGQAYGARQYS 127

Query:   131 AMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFAL 190
             +MGIICQRAMVLHL AAV  TFLYWYSGP L+ MGQS +IA +GQIFARG+IPQIYAFAL
Sbjct:   128 SMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIAHEGQIFARGMIPQIYAFAL 187

Query:   191 SCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVII 250
             +CPMQRF QAQNIVNPLA M+ G FLLH +LTW+   VL FGL+G AL LS SWW LV +
Sbjct:   188 ACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDFGLLGAALILSFSWWLLVAV 247

Query:   251 NALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML----WFVQ 294
             N +YI++SP+CKETWTG S +AF GI PYFKLTVASAVML    W+ Q
Sbjct:   248 NGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLCLEIWYNQ 295

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0010231 "maintenance of seed dormancy" evidence=IMP

GO:0022857 "transmembrane transporter activity" evidence=ISS

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010023 "proanthocyanidin biosynthetic process" evidence=IMP

GO:0015299 "solute:hydrogen antiporter activity" evidence=IDA

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)]

 Score = 630 (226.8 bits), Expect = 1.3e-61, P = 1.3e-61
 Identities = 119/247 (48%), Positives = 174/247 (70%)

Query:    54 ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
             ES+LL+ L+  +++V + NY+++  T +F+GHLG LELA AS+ + GIQ  AYG+MLGM 
Sbjct:    52 ESKLLFNLAAPAVIVYMINYLMSMSTQIFSGHLGNLELAAASLGNTGIQVFAYGLMLGMG 111

Query:   114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
             SAV+T+CGQAYG +KY  +G+  QR+ VL     ++ T +Y +S P L  +G+S +IA  
Sbjct:   112 SAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASA 171

Query:   174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233
               +F  GLIPQI+A+A + P+Q+F Q+Q+IV P A ++     +H++L+W+AVY L  GL
Sbjct:   172 ASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGMGL 231

Query:   234 MGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML--- 290
             +G +L LSLSWW +V+   +YIV S  C+ETW G SV+AF+G+  +FKL+ ASAVML   
Sbjct:   232 LGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLCLE 291

Query:   291 -WFVQIL 296
              W+ QIL
Sbjct:   292 TWYFQIL 298

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009610 "response to symbiotic fungus" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 104/247 (42%), Positives = 166/247 (67%)

Query:    54 ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
             E + L+ L+  +I V + N  ++ +T +F GH+G+ ELA AS+ + G     YG++LGM 
Sbjct:    47 EMKFLFHLAAPAIFVYVINNGMSILTRIFAGHVGSFELAAASLGNSGFNMFTYGLLLGMG 106

Query:   114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
             SAV+T+CGQA+GA +Y  +G+  QR+ V+ +   +  +FL+ +S P L A+G+ E +A  
Sbjct:   107 SAVETLCGQAHGAHRYEMLGVYLQRSTVVLILTCLPMSFLFLFSNPILTALGEPEQVATL 166

Query:   174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233
               +F  G+IP I+A+A++ P+Q+F Q+Q+IV P A ++A   ++H++L+WIAVY L +GL
Sbjct:   167 ASVFVYGMIPVIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWIAVYRLGYGL 226

Query:   234 MGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML--- 290
             + ++L  S SWW +V+   +YI +SP C+ TW G S KAF G+  +F+L+ ASAVML   
Sbjct:   227 LALSLIHSFSWWIIVVAQIVYIKMSPRCRRTWEGFSWKAFEGLWDFFRLSAASAVMLCLE 286

Query:   291 -WFVQIL 296
              W+ QIL
Sbjct:   287 SWYSQIL 293

GO:0005215 "transporter activity" evidence=ISS

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009651 "response to salt stress" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
 Identities = 97/247 (39%), Positives = 164/247 (66%)

Query:    54 ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
             E + L+ L+  +I V + N  ++ +T +F G LG+++LA AS+ + G      G+MLGM 
Sbjct:    50 EMKYLFHLAAPAIFVYVINNGMSMLTRIFAGRLGSMQLAAASLGNSGFNMFTLGLMLGMG 109

Query:   114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
             SAV+T+CGQA+GA +Y  +G+  QR+ ++ +   +  T L+ +S P L ++G+   +A  
Sbjct:   110 SAVETLCGQAHGAHRYDMLGVYLQRSTIVLVITGLPMTLLFIFSKPLLISLGEPADVASV 169

Query:   174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233
               +F  G+IP I+A+A++ P+Q+F Q+Q+IV P A ++A   ++H++L+W++V+   +GL
Sbjct:   170 ASVFVYGMIPMIFAYAVNFPIQKFLQSQSIVTPSAYISAATLVIHLILSWLSVFKFGWGL 229

Query:   234 MGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML--- 290
             +G+++  SLSWW +V+   +YI +SP C+ TW G S KAF G+  +F+L+ ASAVML   
Sbjct:   230 LGLSVVHSLSWWIIVLAQIIYIKISPRCRRTWDGFSWKAFDGLWDFFQLSAASAVMLCLE 289

Query:   291 -WFVQIL 296
              W+ QIL
Sbjct:   290 SWYSQIL 296

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)]

 Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
 Identities = 103/258 (39%), Positives = 162/258 (62%)

Query:    43 AFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQ 102
             A + W + FG ES+ LW L+G +I  +I  Y L  +T  F+G LG LELA  S+ +  I 
Sbjct:    24 ASKVWAKEFGEESKRLWELAGPAIFTAISQYSLGALTQTFSGRLGELELAAVSVENSVIS 83

Query:   103 GLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLR 162
             GLA+G+MLGM SA++T+CGQAYGA +   MGI  QR+ V+    A+    +Y ++ P L 
Sbjct:    84 GLAFGVMLGMGSALETLCGQAYGAGQIRMMGIYMQRSWVILFTTALFLLPVYIWAPPILS 143

Query:   163 AMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLT 222
               G++  I++    FA  +IPQ++A+A + P+Q+F Q+Q  V  +A ++    ++H V +
Sbjct:   144 FFGEAPHISKAAGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFS 203

Query:   223 WIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKL 282
             W+ +   K+GL+G A+TL+ SWW +VI   LYI+++ S    WTG S+ AF  +  + KL
Sbjct:   204 WLFILYFKWGLVGAAITLNTSWWLIVIGQLLYILITKS-DGAWTGFSMLAFRDLYGFVKL 262

Query:   283 TVASAVML----WFVQIL 296
             ++ASA+ML    W++ +L
Sbjct:   263 SLASALMLCLEFWYLMVL 280

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
 Identities = 96/240 (40%), Positives = 158/240 (65%)

Query:    51 FGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIML 110
             F  E + LW L+G +I +SI  Y L   T +F GH+  + LA  S+ +  I G ++G+ML
Sbjct:    42 FNVEVKKLWYLAGPAIFMSITQYSLGAATQVFAGHISTIALAAVSVENSVIAGFSFGVML 101

Query:   111 GMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESI 170
             GM SA++T+CGQA+GA K + +G+  QR+ V+    AVI + LY ++ P L  +GQ+ +I
Sbjct:   102 GMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTAVILSLLYIFAAPILAFIGQTPAI 161

Query:   171 AEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLK 230
             +    IF+  +IPQI+A+A++ P  +F Q+Q+ +  +A+++A A +LH++LTW  +  L+
Sbjct:   162 SSATGIFSIYMIPQIFAYAVNYPTAKFLQSQSKIMVMAAISAVALVLHVLLTWFVIEGLQ 221

Query:   231 FGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML 290
             +G  G+A+ L+ SWWF+V+   +YI  S +C E W+G S +AF  +  + +L++ASAVML
Sbjct:   222 WGTAGLAVVLNASWWFIVVAQLVYI-FSGTCGEAWSGFSWEAFHNLWSFVRLSLASAVML 280

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP;RCA

TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 92/242 (38%), Positives = 158/242 (65%)

Query:    49 RLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGI 108
             R F  E++ LW L+G +I  S+  Y L  +T +F GH+  + LA  S+ +  + G ++GI
Sbjct:    40 REFNVETKKLWYLAGPAIFTSVNQYSLGAITQVFAGHISTIALAAVSVENSVVAGFSFGI 99

Query:   109 MLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSE 168
             MLGM SA++T+CGQA+GA K + +G+  QR+ V+    A+I + LY ++ P L ++GQ+ 
Sbjct:   100 MLGMGSALETLCGQAFGAGKLSMLGVYLQRSWVILNVTALILSLLYIFAAPILASIGQTA 159

Query:   169 SIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYV 228
             +I+    IF+  +IPQI+A+A++ P  +F Q+Q+ +  +A ++A A ++H+ LTW  +  
Sbjct:   160 AISSAAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAVISAVALVIHVPLTWFVIVK 219

Query:   229 LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAV 288
             L++G+ G+A+ L+ SW F+ +   +YI  S +C E W+G S +AF  +  + +L++ASAV
Sbjct:   220 LQWGMPGLAVVLNASWCFIDMAQLVYI-FSGTCGEAWSGFSWEAFHNLWSFVRLSLASAV 278

Query:   289 ML 290
             ML
Sbjct:   279 ML 280

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 100/248 (40%), Positives = 151/248 (60%)

Query:    54 ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
             E++ LW + G +I   +  Y +  +T  F GHLG LELA  SI +    G  +G++LGMA
Sbjct:    37 ETKKLWQIVGPAIFSRVTTYSMLVITQAFAGHLGDLELAAISIVNNVTVGFNFGLLLGMA 96

Query:   114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
             SA++T+CGQA+GAKKY  +G+  QR+ ++     V+    Y ++ P L+ +GQ + IAE 
Sbjct:    97 SALETLCGQAFGAKKYHMLGVYMQRSWIVLFFCCVLLLPTYIFTTPVLKFLGQPDDIAEL 156

Query:   174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAG-AFLLHIVLTWIAVYVLKFG 232
               + A  +IP  +AF LS P+QRF Q Q + N + + AA  A ++HI++ W+ V  LK G
Sbjct:   157 SGVVAIWVIPLHFAFTLSFPLQRFLQCQ-LKNRVTAYAAAVALVVHILVCWLFVDGLKLG 215

Query:   233 LMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML-- 290
             ++G   T+S+SWW  V+I  +Y      C  TWTGLS +A TG+  + KL+ +S VML  
Sbjct:   216 VVGTVATISISWWVNVLILLVYSTCG-GCPLTWTGLSSEALTGLWEFLKLSASSGVMLCL 274

Query:   291 --WFVQIL 296
               W+ +IL
Sbjct:   275 ENWYYRIL 282

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0009835 "fruit ripening" evidence=ISS

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 95/252 (37%), Positives = 155/252 (61%)

Query:    49 RLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGI 108
             R F  ESR LW L+G +I  ++  Y L  VT +F GH+  L LA  SI +  I G ++GI
Sbjct:    62 REFRIESRKLWKLAGPAIFTTMSQYSLGAVTQVFAGHISTLALAAVSIENSVIAGFSFGI 121

Query:   109 MLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSE 168
             MLGM SA++T+CGQA+GA K + +G+  QR+ V+    A+  + +Y ++ P L  +GQ+ 
Sbjct:   122 MLGMGSALETLCGQAFGAGKVSMLGVYLQRSWVILSVTALFLSLIYIFAAPILTFIGQTA 181

Query:   169 SIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYV 228
             +I+    IF+  +IPQI+A+A++ P  +F Q+Q+ +  +A ++    ++H   TW+ +  
Sbjct:   182 AISAMAGIFSIYMIPQIFAYAINFPTAKFLQSQSKIMVMAGISGVVLVIHSFFTWLVMSR 241

Query:   229 LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAV 288
             L +GL G+AL L+ SWW +V+   +YI  + +C E W+G + +AF  +  + KL++ASA 
Sbjct:   242 LHWGLPGLALVLNTSWWVIVVAQLVYI-FNCTCGEAWSGFTWEAFHNLWGFVKLSLASAA 300

Query:   289 ML----WFVQIL 296
             ML    W+   L
Sbjct:   301 MLCLEIWYFMAL 312

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0048765 "root hair cell differentiation" evidence=RCA

TAIR|locus:2156737 AT5G52450 "AT5G52450" [Arabidopsis thaliana (taxid:3702)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 100/244 (40%), Positives = 142/244 (58%)

Query:    58 LWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQ 117
             LWL SG  I VS+  + L  +++MF GHLG+L L+ ASIA+       +  ++G ASA+ 
Sbjct:    31 LWL-SGPLIAVSLLQFCLQVISVMFVGHLGSLPLSAASIATSFASVTGFSFLMGTASALD 89

Query:   118 TICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAM-GQSESIAEQGQI 176
             T+CGQAYGAKKY  +GI  QRAM + L  A IP  + W +   L    GQ++SIA     
Sbjct:    90 TLCGQAYGAKKYGMLGIQMQRAMFV-LTLASIPLSIIWANTEHLLVFFGQNKSIATLAGS 148

Query:   177 FARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGI 236
             +A+ +IP I+A+ L     RF QAQN V P+   +     LH++L W+ V+    G  G 
Sbjct:   149 YAKFMIPSIFAYGLLQCFNRFLQAQNNVFPVVFCSGVTTSLHVLLCWVLVFKSGLGFQGA 208

Query:   237 ALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVM----LWF 292
             AL  S+S+W  V++   Y+  SPSC  TWTG S +A   I P+ +L V SA+M    +W 
Sbjct:   209 ALANSISYWLNVVLLFCYVKFSPSCSLTWTGFSKEALRDILPFLRLAVPSALMVCLEMWS 268

Query:   293 VQIL 296
              ++L
Sbjct:   269 FELL 272

GO:0005215 "transporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006855 "drug transmembrane transport" evidence=IEA

GO:0015238 "drug transmembrane transporter activity" evidence=IEA

GO:0015297 "antiporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0005774 "vacuolar membrane" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LYT3	TT12_ARATH	No assigned EC number	0.7118	0.9306	0.5562	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00018841001 SubName- Full=Chromosome chr12 scaffold_18, whole genome shotgun sequence; (504 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
cd13132	436	cd13132, MATE_eukaryotic, Eukaryotic members of th	5e-73
TIGR00797	342	TIGR00797, matE, putative efflux protein, MATE fam	7e-31
pfam01554	161	pfam01554, MatE, MatE	1e-21
cd13131	435	cd13131, MATE_NorM_like, Subfamily of the multidru	4e-18
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	1e-16
COG0534	455	COG0534, NorM, Na+-driven multidrug efflux pump [D	4e-11
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	3e-10
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	2e-09
cd13143	426	cd13143, MATE_MepA_like, Subfamily of the multidru	4e-08
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	1e-07
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	4e-06
cd13137	432	cd13137, MATE_NorM_like, Subfamily of the multidru	6e-06
cd13138	431	cd13138, MATE_yoeA_like, Subfamily of the multidru	2e-05
cd12082	420	cd12082, MATE_like, Multidrug and toxic compound e	3e-05
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	6e-05
cd13141	443	cd13141, MATE_like_13, Uncharacterized subfamily o	6e-05
cd13139	448	cd13139, MATE_like_14, Uncharacterized subfamily o	2e-04
cd13133	438	cd13133, MATE_like_7, Uncharacterized subfamily of	3e-04
cd13136	424	cd13136, MATE_DinF_like, DinF and similar proteins	3e-04
PRK09575	453	PRK09575, vmrA, multidrug efflux pump VmrA; Review	0.003
cd13135	429	cd13135, MATE_like_9, Uncharacterized subfamily of	0.003
cd13134	438	cd13134, MATE_like_8, Uncharacterized subfamily of	0.004

>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family

 Score =  230 bits (589), Expect = 5e-73
 Identities = 103/247 (41%), Positives = 153/247 (61%), Gaps = 4/247 (1%)

Query: 54  ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
           E++ L  L+   ++ S+  Y L+ V+++F GHLG LELA AS+AS       + I+LG+A
Sbjct: 1   EAKKLLRLAAPLVLTSLLQYSLSVVSVVFVGHLGKLELAAASLASSFANVTGFSILLGLA 60

Query: 114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
           SA+ T+CGQA+GAK Y  +G+  QRA+V+ L   V  + L+  + P L  +GQ   IA  
Sbjct: 61  SALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIARL 120

Query: 174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233
              + R LIP ++A+AL  P++R+ QAQ IV PL  ++  A LL+I+L ++ V+VL  G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 234 MGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML--- 290
           +G AL  S+S+W +V++  LYI  S   K TW G S +AF G  P+ KL + SA+ML   
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 291 -WFVQIL 296
            W  +IL
Sbjct: 241 WWAFEIL 247

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436

>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family

 Score =  118 bits (297), Expect = 7e-31
 Identities = 60/233 (25%), Positives = 108/233 (46%), Gaps = 6/233 (2%)

Query: 66  IVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYG 125
           I+ +I   +L  V   F GHLG ++LA  S+ S  +    + I++G+ +A   +  QA G
Sbjct: 3   ILANILQPLLGLVDTAFVGHLGPVDLAAVSLGS-SVFMFLFSILMGLGTATTALVAQAVG 61

Query: 126 AKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSG-PTLRAMGQSESIAEQGQIFARGLIPQ 184
           A  Y  +G   Q++++L L   +    + ++   P L  MG    +AE  Q + R LI  
Sbjct: 62  AGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILG 121

Query: 185 IYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGI---ALTLS 241
           I A+ L+  ++ F + Q        +     +++I+L +I ++  KFG +GI   AL   
Sbjct: 122 IPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFG-KFGFLGIVGAALATV 180

Query: 242 LSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVMLWFVQ 294
           +S+W + ++   YI  +      W GL    +  +    KL +  A  +    
Sbjct: 181 ISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILES 233

The Multi Antimicrobial Extrusion (MATE) Family (TC 2.A.66) The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS [Transport and binding proteins, Other]. Length = 342

>gnl|CDD|190033 pfam01554, MatE, MatE

 Score = 89.2 bits (222), Expect = 1e-21
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 2/161 (1%)

Query: 65  SIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY 124
            I+ ++   + + +  +F GHLGA+ LA  SIA+  I  L +  +LG+++A+ T+ GQA 
Sbjct: 2   IILENLLQSLYSLIDTLFVGHLGAVALAAVSIAN-SIASLIFMFLLGLSTALTTLVGQAL 60

Query: 125 GAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLRAMGQSESIAEQGQIFARGLIP 183
           GA  +   G+  ++ ++L L  ++    L   +  P L    Q E + E    + R L  
Sbjct: 61  GAGNFKRAGVALRQGLILSLLISLPIALLIILFREPILSLFTQDEEVLELASKYLRILAL 120

Query: 184 QIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWI 224
            I   +L   +  F +      P   +   + LL+I L ++
Sbjct: 121 GIPFLSLQFVLSGFLRGAGDTKPPLYINLISLLLNIPLNYL 161

The MatE domain. Length = 161

>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM

 Score = 83.7 bits (208), Expect = 4e-18
 Identities = 47/210 (22%), Positives = 87/210 (41%), Gaps = 5/210 (2%)

Query: 54  ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMA 113
           E R L  L+   ++  +    + FV  +  G LGA +LA  ++ S  +    +   +G+ 
Sbjct: 1   ELRALLRLALPILIAQLAQMAMGFVDTVMAGRLGADDLAAVALGS-SLWFPVFTFGMGLL 59

Query: 114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQ 173
            AV  +  QA+GA     +    ++ + L L  ++    L W + P L  MGQ   +A  
Sbjct: 60  LAVTPLVAQAHGAGDRRRIRRAVRQGLWLALLLSLPLMLLLWLAPPILPLMGQEPEVAAI 119

Query: 174 GQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVY----VL 229
            + +   L   I    L   ++ F  A     P   +   A +L+I L ++ ++    + 
Sbjct: 120 ARGYLLALAWGIPPALLFQVLRSFLDALGRTRPAMVITLLALVLNIPLNYVLIFGKFGLP 179

Query: 230 KFGLMGIALTLSLSWWFLVIINALYIVLSP 259
             G  G  L  ++ +W + +  A YI    
Sbjct: 180 ALGGAGAGLATAIVYWLMFLALAFYIRRHK 209

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Vibrio cholerae NorM and functions most likely as a multidrug efflux pump, removing xenobiotics from the interior of the cell. The pump utilizes a cation gradient across the membrane to facilitate the export process. NorM appears to bind monovalent cations in an outward-facing conformation and may subsequently cycle through an inward-facing and outward-facing conformation to capture and release its substrate. Length = 435

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 79.6 bits (197), Expect = 1e-16
 Identities = 46/209 (22%), Positives = 88/209 (42%), Gaps = 6/209 (2%)

Query: 51  FGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIML 110
           F    +LL  L+   I+ ++   +   V     GHLGA  LA   +A+  I  L   I +
Sbjct: 12  FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANP-IFFLIIAIFI 70

Query: 111 GMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSES 169
           G+ +    +  QA GA        +  + ++L L   ++   L  +++ P LR +G    
Sbjct: 71  GLGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAE 130

Query: 170 IAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVL 229
           + E    + R ++       LS  +    +          +     LL+IVL ++ ++ L
Sbjct: 131 VLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGL 190

Query: 230 KFGLMGI---ALTLSLSWWFLVIINALYI 255
            FG +G+   AL   ++ W   ++  +Y+
Sbjct: 191 -FGGLGVAGAALATVIARWIGALLLLIYL 218

Length = 455

>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms]

 Score = 63.0 bits (154), Expect = 4e-11
 Identities = 38/201 (18%), Positives = 66/201 (32%), Gaps = 4/201 (1%)

Query: 56  RLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASA 115
           + +  L     + S+   +   +  +F   LG + LA   IA   I    +    G+A A
Sbjct: 241 KEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALR-IASFIFMPPFGIAQA 299

Query: 116 VQTICGQAYGAKKYAAMGIICQRAMVLHLG-AAVIPTFLYWYSGPTLRAMGQSESIAEQG 174
           V  + GQ  GA  Y       + A+ L L  A +I   L  +  P +        +    
Sbjct: 300 VTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALA 359

Query: 175 QIFARGLIPQIYAFALSCPMQR-FRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL 233
            I             +   +    R A +   P        +   + L ++  +    GL
Sbjct: 360 VILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGL 418

Query: 234 MGIALTLSLSWWFLVIINALY 254
            G+ +   LS     I+  L 
Sbjct: 419 AGVWIGFPLSLILRAILLLLR 439

Length = 455

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 8/207 (3%)

Query: 56  RLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASA 115
           R +W L+   I+ ++   ++  V +   G LGA  +A   +A+  +  L   + + + + 
Sbjct: 1   RRIWSLAWPVILENLLQTLVGLVDVFMVGRLGAEAIAAVGLAT-QVLWLLLVLNMALGTG 59

Query: 116 VQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLRAMGQSESIAEQG 174
              +  Q+YGA  Y        ++++L L  ++    L   ++ P LR +G    +    
Sbjct: 60  TVALVSQSYGAGDYERARRALGQSLLLALLLSLPLALLGLLFAEPLLRLLGADPEVIALA 119

Query: 175 QIFARGLIPQIYAFALSCPMQR-FRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVL---- 229
             + R ++  I  F LS       R A +   P+  M     +L+IVL ++ ++ L    
Sbjct: 120 LTYLRIVLLGIPFFFLSLVGNAALRGAGDTKTPMYIMIIVN-VLNIVLDYVLIFGLWGFP 178

Query: 230 KFGLMGIALTLSLSWWFLVIINALYIV 256
             G+ G AL   +S     ++    ++
Sbjct: 179 GLGVAGAALATVISRVVGALLLLFLLL 205

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 57.5 bits (140), Expect = 2e-09
 Identities = 39/206 (18%), Positives = 79/206 (38%), Gaps = 8/206 (3%)

Query: 56  RLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASA 115
           R +  ++   ++  +   ++ F    F G L  + LA +  A V +      +  G++S 
Sbjct: 5   REILKIALPLVLSMLSQTVMGFTDRAFLGRLSEVALAASGPAGV-LYFAILMLFFGLSSG 63

Query: 116 VQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRA-MGQSESIAEQG 174
           VQ    Q  GA +Y+ +G +  + +   L  A +   L   + P L   +G S  +    
Sbjct: 64  VQVFVAQYNGAGRYSRIGRVLWQGLYFSLLLAPLLALLSALAAPLLFLLLGHSPEVQALE 123

Query: 175 QIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL- 233
             + R  I       L   ++ F         +        +++IVL +  ++  K G  
Sbjct: 124 VEYFRIRILGAPFSLLGAALRAFFSGIGRTRVVMVANLVMVVVNIVLDYALIFG-KLGFP 182

Query: 234 -MGI---ALTLSLSWWFLVIINALYI 255
            MGI   A+   ++    ++   L +
Sbjct: 183 AMGIAGAAIATVIAEAVSLLFFLLLL 208

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 48/190 (25%), Positives = 83/190 (43%), Gaps = 13/190 (6%)

Query: 56  RLLWLLSGASIVVSIFNYMLTFVTLMFTGHL-GALELAGASIASVGIQGL-AYGIMLGMA 113
           +L    +  +I+  + N +   V  +F GH  GAL LA  ++    I  L A G+M+G+ 
Sbjct: 4   KLFLKFALPAIIGMLVNGLYNIVDGIFVGHGVGALALAAVNLVFPIIMLLMALGLMIGVG 63

Query: 114 SAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLRAMGQSESIAE 172
            A  ++  +  GA        I   A++L L   ++ T L   +  P LR +G S  +  
Sbjct: 64  GA--SLISRRLGAGDREKANRIFSTALLLSLILGLLLTILGLLFLDPLLRLLGASGELLP 121

Query: 173 QGQIFARGLIP----QIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYV 228
               + R ++      I +  L+      R        +  M  GA +L+I+L  + ++V
Sbjct: 122 YAVDYLRIILLGAPFTILSSVLN---NLLRAEGKPKLAMLGMLIGA-VLNIILDPLFIFV 177

Query: 229 LKFGLMGIAL 238
           L  G+ G AL
Sbjct: 178 LGLGIAGAAL 187

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. This subfamily includes Streptococcus aureus MepA and Vibrio vulnificus VmrA and functions most likely as a multidrug efflux pump. Length = 426

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 41/193 (21%), Positives = 68/193 (35%), Gaps = 7/193 (3%)

Query: 65  SIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY 124
             +VSI   ++  +   +    G +  A   IA+  I   A+     +  AV T   Q  
Sbjct: 238 QSLVSISFLIINSIVNSY----GVVASAAYGIAN-KINSFAFLPPSAIGQAVSTFVAQNI 292

Query: 125 GAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTL-RAMGQSESIAEQGQIFARGLIP 183
           GA K        +  +++ L   +I   L ++  P L         + E G  + R    
Sbjct: 293 GAGKIERAKKGLRTGIIISLIIGLIIILLVFFFAPQLLGLFTSDPEVIEIGAEYLRIYSI 352

Query: 184 QIYAFA-LSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSL 242
               F  L      FR       P+       +L+ I L ++   +   GL GI L + +
Sbjct: 353 DYILFGILFVFNGLFRGLGKTKFPMIISILRLWLVRIPLAYLLSRLTGLGLFGIWLAMPI 412

Query: 243 SWWFLVIINALYI 255
           S     II  +Y 
Sbjct: 413 SNILSAIICIIYY 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 46/214 (21%), Positives = 79/214 (36%), Gaps = 4/214 (1%)

Query: 44  FRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQG 103
                       RLL +   ++I  S+ +  L  +  +     GA  LA  ++A   I  
Sbjct: 208 LSLLKPDLELLRRLLRIGLPSAIQNSLLSLGLLIIVAIVAAFGGAAALAAYTVAF-RIAS 266

Query: 104 LAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLR 162
           LA+   LG+A A   + GQ  GA  +     I   A+++ L    +   L   +  P L 
Sbjct: 267 LAFMPALGLAQAALPVVGQNLGAGNFDRARRITWVALLIGLLIGAVLGLLILLFPEPILS 326

Query: 163 AMGQSESIAEQGQIFARGLIPQIYAFALSCPMQ-RFRQAQNIVNPLASMAAGAFLLHIVL 221
                    E    + R L        +   +Q  F+ A   +  L       +++ + L
Sbjct: 327 LFTNDPEFLELAVSYLRILAIYYLFVGIGYVLQAGFQAAGRTLKSLIVSLLSYWVVRLPL 386

Query: 222 TWIAVYVLKFGLMGIALTLSLSWWFLVIINALYI 255
            ++  Y L  GL GI L L +S     ++  L+ 
Sbjct: 387 AYVLAY-LGLGLYGIWLALVISLILAALVLLLFF 419

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM

 Score = 47.1 bits (113), Expect = 6e-06
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 9/195 (4%)

Query: 65  SIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY 124
           + +  +   +   V L      G   LA   I    I+ LA+    G + A  T+ GQ  
Sbjct: 235 AGLEQLLRSLGFLVLLAIVASYGTAALAAYQIGLR-IESLAFMPGFGFSMAASTLVGQNL 293

Query: 125 GAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLRAMGQSESIAEQG----QIFAR 179
           GA          +RA+ L +    +   L + ++ P          + E G    +I A 
Sbjct: 294 GAGDPDEARRYGKRALRLGVLFMGLLGLLLFIFAPPLASLFTPDPEVIELGVLYLRIVAL 353

Query: 180 GLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALT 239
                  +F LS      R A +   PL       +L+ + L ++  +VL  GL GI L 
Sbjct: 354 SQPFLAISFVLSGA---LRGAGDTRPPLIINLISMWLVRLPLAYLLGFVLGLGLTGIWLA 410

Query: 240 LSLSWWFLVIINALY 254
           + +      I+    
Sbjct: 411 MFVDTIVRAILLLYR 425

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 432

>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA

 Score = 45.1 bits (108), Expect = 2e-05
 Identities = 44/178 (24%), Positives = 70/178 (39%), Gaps = 9/178 (5%)

Query: 66  IVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY 124
           ++ ++   +   V L+  G  LG   LA  S  S  I  L   I +G++     +  Q  
Sbjct: 13  LLSNLLQQLYNLVDLLIVGQFLGVAALAAVSNGS-PIIFLLTAIGMGLSMGGTILISQYI 71

Query: 125 GAKKYAAMGIICQRAMVLHLGAAVIPTFLYWY-SGPTLRAMGQSESIAEQGQIFARGL-- 181
           GAK            +VL L   ++ T L    + P LR M     I E    + R    
Sbjct: 72  GAKDEEKAKKAVGTLLVLFLILGIVLTILGLLFAPPILRLMNTPAEILELAVSYLRICFL 131

Query: 182 -IPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIAL 238
            IP I+ +     +   R   +   PL  +   A +L+I+L  + + V   G+ G AL
Sbjct: 132 GIPFIFGYNAYSAI--LRGLGDSKTPLYFVII-ACVLNIILDLLFIAVFHMGVAGAAL 186

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 431

>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 34/199 (17%), Positives = 77/199 (38%), Gaps = 5/199 (2%)

Query: 62  SGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICG 121
           +   ++  +   +   V   F G L    LA   +A   +  L   + +G++     +  
Sbjct: 1   AAPLLLSMLLQTLYNLVDTFFLGRLLGDALAAVGLAFP-LIALLIALGVGLSVGTSALIS 59

Query: 122 QAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTL-RAMGQSESIAEQGQIFARG 180
           QA GA        +  +++VL +   ++   L  +  P +   +G  E + E    +   
Sbjct: 60  QAIGAGDEEKARRVLVQSIVLAILLGLLLAALLLFFSPLILSLLGAEEEVIELAATYLTI 119

Query: 181 LIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVY---VLKFGLMGIA 237
           LI  +    L   +    Q +        ++  + LL+I+L  + ++     + G+ G A
Sbjct: 120 LILGLPITFLGAVLSGILQGEGDTRTAMIISVLSNLLNILLDPLLIFGLGPPELGIAGAA 179

Query: 238 LTLSLSWWFLVIINALYIV 256
           L   +S+    ++  +Y+ 
Sbjct: 180 LATVISYVIGALLLLIYLR 198

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 420

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 44.0 bits (105), Expect = 6e-05
 Identities = 33/163 (20%), Positives = 59/163 (36%), Gaps = 5/163 (3%)

Query: 77  FVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIIC 136
            V   F   LG   LA  + AS  I    +   L +  A Q I G   GA  +       
Sbjct: 249 TVITAFIARLGTAALAARTYASN-ISMFVFLFSLAIGQATQIIVGHLVGAGDFDEAYKRV 307

Query: 137 QRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQG-QIFARGLIPQI-YAFALSCP 193
            +++ + L  ++    L   +  P L        I   G  +    ++ +   AF +   
Sbjct: 308 LKSLKIGLLVSLAVALLLALFREPILGLFTDDPEIIALGKTLLLISILLEPGRAFNIVL- 366

Query: 194 MQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGI 236
           +   R A +   P+       + + + L ++   VL  GL+G+
Sbjct: 367 IGSLRAAGDARFPVLIGIISMWGISVPLAYLLGIVLGLGLLGV 409

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 47/203 (23%), Positives = 75/203 (36%), Gaps = 21/203 (10%)

Query: 66  IVVSIFNYMLTF-VTLMFTGHLGALELAGASIAS-VGIQGLAYGIMLGMASAVQTICGQA 123
           I + +    L F V L F G LG   LAG S+A  V    +A   +L + +A   +   A
Sbjct: 20  IAIGMIIQTLYFLVDLYFVGQLGDAALAGVSLAGNVMFFVMALTQVLNVGTA--ALVSHA 77

Query: 124 YGAKKYAAMGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLI 182
            G K       +  ++++L     ++   L Y +    L  +    +  E    +    I
Sbjct: 78  VGRKDQGEANAVFNQSLLLAAVLGLVVLVLGYLFGRLYLETLAADAATVEAATTYLYWFI 137

Query: 183 P----QIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLT------WIAVYVLKFG 232
           P    Q     L   +    +   IV P   +   A LL+I+L       W     L  G
Sbjct: 138 PSLALQFILTVLGAAL----RGTGIVKPFMVIQILAVLLNIILAPILITGWGTGRAL--G 191

Query: 233 LMGIALTLSLSWWFLVIINALYI 255
           + G  L  S+S    V++   Y 
Sbjct: 192 VAGAGLASSISVAIAVVLLLYYF 214

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 443

>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 29/107 (27%), Positives = 52/107 (48%), Gaps = 10/107 (9%)

Query: 78  VTLMFTGHLGALELAGASIASVG----IQGLAYGIMLGMASAVQTICGQAYGAKKYAAMG 133
           V L F   LGAL     +IA+VG    +  + Y I +G++ A   +  +  G K     G
Sbjct: 36  VDLYFVSRLGAL-----AIATVGLTESVLTIVYSIAIGLSMAATALVARRIGEKDPEGAG 90

Query: 134 IICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFAR 179
               +A++L +  ++I + L Y+++   L  MG S ++  +G  + R
Sbjct: 91  FAAVQAILLGVALSLILSILGYFFAEDILSLMGASPAVIAEGYGYTR 137

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 448

>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 41.7 bits (99), Expect = 3e-04
 Identities = 52/228 (22%), Positives = 83/228 (36%), Gaps = 21/228 (9%)

Query: 39  RRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIAS 98
           RRR   R   R      R +  L   S +    +     V  +  G LG  ELA  +I  
Sbjct: 214 RRRFGLRRAWRFDRELLRRILRLGLPSGLQFFLDVGAFTVFFLLIGRLGTTELAATNIV- 272

Query: 99  VGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSG 158
             I  LA+  M+G+  AV ++ GQA GA +      + +R + L L   ++   L+    
Sbjct: 273 FSINSLAFLPMIGLGIAVSSLVGQALGAGRPDLAMRVTRRGLKLALAYMLLLGILFLLFP 332

Query: 159 PTL----RAMGQSESIAEQGQIFARGL--------IPQIYAFALSCPMQRFRQAQNIVNP 206
             L            IAE      R +        +  ++A AL       R A +    
Sbjct: 333 ELLLSIFTPGADFALIAELAVPLLRFVAAYILFDALALVFAGAL-------RGAGDTRFV 385

Query: 207 LASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALY 254
           + +    A+L  ++     + VL  GL G     ++    L +I  L 
Sbjct: 386 MLAELIVAWLY-LLPPAYLLVVLGAGLAGAWTVETVYVIVLALIFLLR 432

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins

 Score = 41.4 bits (98), Expect = 3e-04
 Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 5/198 (2%)

Query: 56  RLLWLLSGASIVVSIFNYMLTFVTLMFTGHLG-ALELAGASIASVGIQGLAYGIMLGMAS 114
           R +  L+  +I+ +I   +L  V     GHLG A  L   ++ +  I    + +   +  
Sbjct: 3   REILALALPAILSNITVPLLGLVDTAVVGHLGSAAYLGAVALGTT-IFNTLFWLFGFLRM 61

Query: 115 AVQTICGQAYGAKKYAAMGIICQRAMVLHLGA-AVIPTFLYWYSGPTLRAMGQSESIAEQ 173
               +  QA GA        +  RA++L L    ++           L  +G S ++A  
Sbjct: 62  GTTGLVAQALGAGDREEAIALLVRALLLALAIGLLLILLQSPLLALALLLLGASAAVAAL 121

Query: 174 GQIFARGLIPQIYAFALSCPMQR-FRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFG 232
            + + R  I    A  L+      FR  Q+   PL  +     +++IVL  + V+ L +G
Sbjct: 122 ARQYLRIRILGAPAVLLNYVATGWFRGLQDTRTPLI-LQIVGNVVNIVLDPLFVFGLGWG 180

Query: 233 LMGIALTLSLSWWFLVII 250
           + G AL   ++ +   ++
Sbjct: 181 VAGAALATVIAQYLGALL 198

Escherichia coli DinF is a membrane protein that has been found to protect cells against oxidative stress and bile salts. The expression of DinF is regulated as part of the SOS system. It may act by detoxifying oxidizing molecules that have the potential to damage DNA. Some member of this family have been reported to enhance the virulence of plant pathogenic bacteria by enhancing their ability to grow in the presence of toxic compounds. Proteins from the MATE family are involved in exporting metabolites across the cell membrane and are often responsible for multidrug resistance (MDR). Length = 424

>gnl|CDD|236576 PRK09575, vmrA, multidrug efflux pump VmrA; Reviewed

 Score = 38.8 bits (91), Expect = 0.003
 Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 19/194 (9%)

Query: 55  SRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIA--SVGIQGLAYGIMLG 111
            R  W  +  SI   + N +   V  +F GH +GA  LAG ++A   +GI  L  G+M+G
Sbjct: 11  YRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVG 69

Query: 112 MAS-AVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPT-LRAMGQSES 169
           M + ++ +I     G         I    ++L L    I + + +      LRA G    
Sbjct: 70  MGTGSLLSI---KRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGR 126

Query: 170 IAEQGQ----IFARGLIPQIYAFALSCPMQ-RFRQAQNIVNPLASMAAGAFLLHIVLTWI 224
             E       +   G +  + A AL  P   R  ++ N+   L  M  GA L++IVL ++
Sbjct: 127 TLELALQYIQVLIWGCLFTLGAIAL--PFLLRNDESPNLATGL--MVIGA-LINIVLDYL 181

Query: 225 AVYVLKFGLMGIAL 238
            +  L +GL G A+
Sbjct: 182 FIGWLDWGLTGAAI 195

Length = 453

>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 33/176 (18%), Positives = 64/176 (36%), Gaps = 4/176 (2%)

Query: 81  MFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAM 140
                +G L L   ++   GI+ +    M G +SA  T+ G++ G K       I    +
Sbjct: 253 RILNRIGELALGIYTLVF-GIENIVLMPMYGYSSAALTLVGESIGKKDLKEALRIGNICL 311

Query: 141 VLHL--GAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFR 198
            L L    A    FL  +    L        +      +   +I  ++  +++       
Sbjct: 312 GLGLLIYIAAAIVFLA-FPYKILSLFTNDPELINYSIPYLIFIIIILFFKSINIVYGFAI 370

Query: 199 QAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALY 254
           +A      +        ++ + +  + ++V K GL G+ +TL +      IIN L 
Sbjct: 371 RAIGDTKWMLYTQIIGTIIVVSVALLLIFVFKLGLAGVYITLFIDEIIRAIINFLK 426

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 429

>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 36/208 (17%), Positives = 77/208 (37%), Gaps = 14/208 (6%)

Query: 58  LWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQ 117
           L+ L+    +  +   +L  +            +A   +A+  I  L   I   +++   
Sbjct: 5   LFALAWPIFIELLLQMLLGTIDTFMLSRYSDNAVAAVGVAN-QILFLLILIFSFISTGTS 63

Query: 118 TICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYW-YSGPTLRAMGQSESIAEQG-- 174
            +  Q  GAK       I   A++ +L   ++ + L   +    LR MG    +   G  
Sbjct: 64  ILIAQYLGAKDKKKARQIAGVALLFNLLLGLVFSLLLLFFGAELLRLMGLPPELLALGST 123

Query: 175 --QIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVL--- 229
             +I    L  Q  +  LS      R       P+   +    +L+IV  ++ ++     
Sbjct: 124 YLRIVGGSLFLQALSLTLSAI---LRSHGRTKIPMYV-SLIMNILNIVGNYLLIFGWFGL 179

Query: 230 -KFGLMGIALTLSLSWWFLVIINALYIV 256
            K G+ G+A++  +S    +++  + + 
Sbjct: 180 PKLGVAGVAISTVISRAVGLVLLFILLF 207

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. Length = 438

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	100.0
PRK00187	464	multidrug efflux protein NorA; Provisional	100.0
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	100.0
PRK10189	478	MATE family multidrug exporter; Provisional	100.0
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	100.0
PRK01766	456	multidrug efflux protein; Reviewed	99.97
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.96
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.94
PRK00187	464	multidrug efflux protein NorA; Provisional	99.94
PRK01766	456	multidrug efflux protein; Reviewed	99.94
PRK10189	478	MATE family multidrug exporter; Provisional	99.94
COG0534	455	NorM Na+-driven multidrug efflux pump [Defense mec	99.93
PRK09575	453	vmrA multidrug efflux pump VmrA; Reviewed	99.92
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.92
PRK10367	441	DNA-damage-inducible SOS response protein; Provisi	99.87
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.86
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.85
PF01554	162	MatE: MatE; InterPro: IPR002528 Characterised memb	99.84
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.83
TIGR02900	488	spore_V_B stage V sporulation protein B. SpoVB is	99.81
PRK15099	416	O-antigen translocase; Provisional	99.81
PRK10459	492	colanic acid exporter; Provisional	99.8
TIGR01695	502	mviN integral membrane protein MviN. This model re	99.76
PRK15099	416	O-antigen translocase; Provisional	99.74
COG2244	480	RfbX Membrane protein involved in the export of O-	99.73
TIGR00797	342	matE putative efflux protein, MATE family. The MAT	99.54
PF03023	451	MVIN: MviN-like protein; InterPro: IPR004268 This	99.37
KOG1347	473	consensus Uncharacterized membrane protein, predic	99.2
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	99.12
COG0728	518	MviN Uncharacterized membrane protein, putative vi	99.08
PF14667	146	Polysacc_synt_C: Polysaccharide biosynthesis C-ter	98.95
PRK10459	492	colanic acid exporter; Provisional	98.94
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	98.79
COG2244	480	RfbX Membrane protein involved in the export of O-	98.66
PF07260	345	ANKH: Progressive ankylosis protein (ANKH); InterP	98.65
PF04506	549	Rft-1: Rft protein; InterPro: IPR007594 Asymmetric	98.57
KOG2864	530	consensus Nuclear division RFT1 protein [Cell cycl	98.01
PF01943	273	Polysacc_synt: Polysaccharide biosynthesis protein	97.68
PF13440	251	Polysacc_synt_3: Polysaccharide biosynthesis prote	96.7
COG4267	467	Predicted membrane protein [Function unknown]	87.6
COG4267	467	Predicted membrane protein [Function unknown]	82.06

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=100.00  E-value=2.5e-34  Score=266.24  Aligned_cols=237  Identities=19%  Similarity=0.252  Sum_probs=220.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      ++.|+++++++|.+++++.+.+++.+|+.++||+|++++|+.++++++.. +.+.+..+++.+.++++||++|+||++++
T Consensus        14 ~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~-~~~~~~~gl~~g~~~liaq~~Ga~~~~~~   92 (455)
T COG0534          14 KILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFF-LIIAIFIGLGTGTTVLVAQAIGAGDRKKA   92 (455)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHcCCchHHH
Confidence            68899999999999999999999999999999999999999999999999 55899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..++++.++++.+++.. +.+++.++++.+++.++++.+.+.+|+++..++.|+..++.+..+.+|+.||+|.+++++
T Consensus        93 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~  172 (455)
T COG0534          93 KRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYIL  172 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Confidence            9999999999999997776 669999999999999888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh-cC-CCchhHHHHHHHHHHHHHHHHHHHHHhCccc-cccccCCCHHhhhChHHHHHHHHHHHH
Q 044433          212 AGAFLLHIVLTWIAVYV-LK-FGLMGIALTLSLSWWFLVIINALYIVLSPSC-KETWTGLSVKAFTGICPYFKLTVASAV  288 (303)
Q Consensus       212 ~~~~~~~i~~~~~li~~-~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~  288 (303)
                      +++.++|+++||+|++. ++ +|+.|+|+||.+++++.+++..++++++++. .....+..+++++.+++++++|.|.++
T Consensus       173 ~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~  252 (455)
T COG0534         173 LLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFL  252 (455)
T ss_pred             HHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHH
Confidence            99999999999999999 68 9999999999999999999999999988652 222233434557899999999999999


Q ss_pred             HH
Q 044433          289 ML  290 (303)
Q Consensus       289 ~~  290 (303)
                      +.
T Consensus       253 ~~  254 (455)
T COG0534         253 ES  254 (455)
T ss_pred             HH
Confidence            98

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=100.00  E-value=8.5e-32  Score=250.83  Aligned_cols=237  Identities=21%  Similarity=0.296  Sum_probs=212.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      ++.|+++++++|.++++++..+.+.+|+.+++++|++++|+++++.++.+ +.+.+..|++++..+++||++|+||+|++
T Consensus         7 ~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~-~~~~~~~gl~~~~~~i~aq~~Ga~~~~~~   85 (464)
T PRK00187          7 TELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYS-FVSIFCVGVIAAVGTLVAIRHGAGDIEGA   85 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChhhH
Confidence            68999999999999999999999999999999999999999999999988 45788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA  212 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  212 (303)
                      ++..++++.++++++++..++..+.++++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++++++.++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~  165 (464)
T PRK00187         86 TRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMVISL  165 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99999999999999988876655789999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHHH
Q 044433          213 GAFLLHIVLTWIAVYVL----KFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVAS  286 (303)
Q Consensus       213 ~~~~~~i~~~~~li~~~----~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~  286 (303)
                      ++.++|+++||+|++.+    ++|+.|+|+||.++++...+...++++++++.++  .+++..+..++.+++++|+++|.
T Consensus       166 ~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg~P~  245 (464)
T PRK00187        166 AGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLGLPI  245 (464)
T ss_pred             HHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhhhhH
Confidence            99999999999999863    4899999999999998888777667765433221  12222233466789999999999


Q ss_pred             HHHH
Q 044433          287 AVML  290 (303)
Q Consensus       287 ~~~~  290 (303)
                      +++.
T Consensus       246 ~~~~  249 (464)
T PRK00187        246 GGTY  249 (464)
T ss_pred             HHHH
Confidence            9987

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=100.00  E-value=1.4e-31  Score=247.49  Aligned_cols=246  Identities=19%  Similarity=0.194  Sum_probs=213.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHL-GALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~-g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      ++.|+++++++|.++++++..+++.+|+.++|++ |++++|+.+++.++.+ +.+.+..+++.+.++++||++|+||+|+
T Consensus         6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   84 (441)
T PRK10367          6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATS-FLFMLLLFLRMSTTGLTAQAFGAKNPQA   84 (441)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            5689999999999999999999999999999997 6779999999999998 4588889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      +++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..+.++++|+.||++.+++.
T Consensus        85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~  164 (441)
T PRK10367         85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL  164 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence            9999999999999999988744 778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccccc-ccCCCHHhhhChHHHHHHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKET-WTGLSVKAFTGICPYFKLTVASAVM  289 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~~~  289 (303)
                      ++++.++|+++|++|++.+++|+.|+++||.+++++.+++..++++++++.++. .+.++.+.++.+++++|++.|.++.
T Consensus       165 ~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~~  244 (441)
T PRK10367        165 LVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIMLR  244 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHHH
Confidence            999999999999999998889999999999999999888877777654322211 1111111124678999999999987


Q ss_pred             H----HHHHHHhhh
Q 044433          290 L----WFVQILPPL  299 (303)
Q Consensus       290 ~----~~~~~~~~~  299 (303)
                      .    +.+.+.+.+
T Consensus       245 ~~~~~~~~~~~~~~  258 (441)
T PRK10367        245 SLLLQLCFGAITVL  258 (441)
T ss_pred             HHHHHHHHHHHHHH
Confidence            6    344444433

>PRK10189 MATE family multidrug exporter; Provisional

Probab=100.00  E-value=3.3e-31  Score=247.33  Aligned_cols=243  Identities=11%  Similarity=0.156  Sum_probs=213.8

Q ss_pred             chhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhc
Q 044433           47 WPRLFG-WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYG  125 (303)
Q Consensus        47 ~~~~~~-~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g  125 (303)
                      ++|.+| +..|+++++++|.++++++..+++.+|+.++|++|++++|+++++.++.+ +.+.+..+++++.++++||++|
T Consensus        19 ~~~~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~-~~~~~~~gl~~g~~~lvsq~~G   97 (478)
T PRK10189         19 KRKSYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNM-VIMAFFAAIDLGTTVVVAFSLG   97 (478)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhc
Confidence            444443 56899999999999999999999999999999999999999999999988 5588999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC
Q 044433          126 AKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMG--QSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQN  202 (303)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g  202 (303)
                      +||+|++++..++++.+++.++++.+ +.+.+.++++.+++  .|+|+.+.+.+|+++..++.|+..+..+.++++|+.|
T Consensus        98 a~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G  177 (478)
T PRK10189         98 KRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAG  177 (478)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999887 45778899999984  6999999999999999999999999999999999999


Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhc----CCCchhHHHHHHHHHHHHHHHHHHHHHhC-c-cccccccC-CCHHhhhC
Q 044433          203 IVNPLASMAAGAFLLHIVLTWIAVYVL----KFGLMGIALTLSLSWWFLVIINALYIVLS-P-SCKETWTG-LSVKAFTG  275 (303)
Q Consensus       203 ~~~~~~~~~~~~~~~~i~~~~~li~~~----~~G~~Gaalat~~s~~~~~~~~~~~l~~~-~-~~~~~~~~-~~~~~~~~  275 (303)
                      |++.++++++++.++|++++++|++.+    ++|+.|+|+|+.+++++..++..+++.++ + ..+..+++ +.+.+++.
T Consensus       178 ~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (478)
T PRK10189        178 NTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAI  257 (478)
T ss_pred             chHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHH
Confidence            999999999999999999999999863    79999999999999999888777666543 1 12222222 22234678


Q ss_pred             hHHHHHHHHHHHHHH
Q 044433          276 ICPYFKLTVASAVML  290 (303)
Q Consensus       276 ~~~~~~~~~p~~~~~  290 (303)
                      +++++++|+|.++..
T Consensus       258 ~~~il~iG~P~~~~~  272 (478)
T PRK10189        258 IWEVMGIGIPASIES  272 (478)
T ss_pred             HHHHHHHhccHHHHH
Confidence            999999999999987

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=100.00  E-value=1.6e-30  Score=241.78  Aligned_cols=236  Identities=21%  Similarity=0.220  Sum_probs=212.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      +..|+++++++|.+++++...+++++|+.++|+ .|++++|+++++.++.+ ....+..+++.+.+++++|++|+||+|+
T Consensus         9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~-~~~~~~~~~~~g~~~lvsq~~Ga~~~~~   87 (453)
T PRK09575          9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIG-IILGIGLMVGMGTGSLLSIKRGEGDLEK   87 (453)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH-HHHHHHHHHhccHHHHHHHHhcCCCHHH
Confidence            467999999999999999999999999999999 59999999999999988 4477888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      +++..++++.++.+++++.. +++.+.++++.+++.|+++.+.+.+|+++..++.++..+....++++|+.||++.+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~  167 (453)
T PRK09575         88 AKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATGL  167 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            99999999999999999887 55888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc-cccCCCHHhhhChHHHHHHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE-TWTGLSVKAFTGICPYFKLTVASAVM  289 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~  289 (303)
                      ++.+.++|+++|++|++.+++|+.|+++|+.+++++..++..++++++++..+ ..+.+ +.+++.+++++++|.|.+++
T Consensus       168 ~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~ig~P~~~~  246 (453)
T PRK09575        168 MVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKEL-RFNWSLAPKIVLLGSSSFFM  246 (453)
T ss_pred             HHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccC-CcCHHHHHHHHHhChhHHHH
Confidence            99999999999999999888999999999999999999887777765433222 11222 23456789999999999999


Q ss_pred             H
Q 044433          290 L  290 (303)
Q Consensus       290 ~  290 (303)
                      .
T Consensus       247 ~  247 (453)
T PRK09575        247 Y  247 (453)
T ss_pred             H
Confidence            8

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.97  E-value=6.5e-29  Score=231.38  Aligned_cols=237  Identities=19%  Similarity=0.282  Sum_probs=211.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++++++|.++++++..+.+.+|+.+++++|++++++++.+.++.. ....+..|++.+..|.+||++|+||+|++
T Consensus         9 ~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~-~~~~~~~g~~~a~~~~vs~~~g~~~~~~~   87 (456)
T PRK01766          9 SEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWL-PVILFGHGLLLALTPIVAQLNGAGRRERI   87 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence            68999999999999999999999999999999999999999999998877 44778899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..++++.+++++++++.++ +.+.++++.+++.|+++.+.+..|+++..++.++..+..+.++++|+.||++++++.+
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  167 (456)
T PRK01766         88 AHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMVIG  167 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHH
Confidence            999999999999999888744 7778899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHh----cCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHH
Q 044433          212 AGAFLLHIVLTWIAVYV----LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVA  285 (303)
Q Consensus       212 ~~~~~~~i~~~~~li~~----~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p  285 (303)
                      +++.++|+++++++++.    .++|+.|+++||.+++++..++..++++++++.++  .+.++.++.++.+++++++++|
T Consensus       168 ~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~~P  247 (456)
T PRK01766        168 FLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLGLP  247 (456)
T ss_pred             HHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHccch
Confidence            99999999999999864    25899999999999999999988888776543321  2222233446778999999999


Q ss_pred             HHHHH
Q 044433          286 SAVML  290 (303)
Q Consensus       286 ~~~~~  290 (303)
                      ..++.
T Consensus       248 ~~~~~  252 (456)
T PRK01766        248 IGLAI  252 (456)
T ss_pred             HHHHH
Confidence            99887

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.96  E-value=1.5e-27  Score=220.16  Aligned_cols=246  Identities=39%  Similarity=0.631  Sum_probs=237.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      .+.|++++++.|..+..+.+++.+++++.++||+|+.++|+.++++...+++.+.+..|+..+..|+.+|++|+++++..
T Consensus        25 ~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~l  104 (473)
T KOG1347|consen   25 TESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTAL  104 (473)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccchh
Confidence            78899999999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA  212 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  212 (303)
                      ..+.+++..+....++|...++.+.++++..+++++++...+..|.++..+..+.......+..++|++++..+..++..
T Consensus       105 g~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~~  184 (473)
T KOG1347|consen  105 GVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIGL  184 (473)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH--
Q 044433          213 GAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML--  290 (303)
Q Consensus       213 ~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~--  290 (303)
                      .+.++|+++++++++.+++|..|++++..++++........+..... +.+.|..++++ +++|+++++.++|+++|.  
T Consensus       185 ~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~-~~~~~~~~~lai~s~~micl  262 (473)
T KOG1347|consen  185 VALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE-FDSWGPFFALAIPSAVMICL  262 (473)
T ss_pred             HHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence            99999999999999999999999999999999999999999888775 77889999988 999999999999999998  


Q ss_pred             --HHHHHHhhhh
Q 044433          291 --WFVQILPPLI  300 (303)
Q Consensus       291 --~~~~~~~~~~  300 (303)
                        |.+|+++++.
T Consensus       263 E~w~~eil~l~~  274 (473)
T KOG1347|consen  263 EWWAYEILVLLA  274 (473)
T ss_pred             HHHHHHHHHHHH
Confidence              8899988763

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.94  E-value=2.1e-24  Score=193.49  Aligned_cols=226  Identities=26%  Similarity=0.454  Sum_probs=201.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 044433           64 ASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLH  143 (303)
Q Consensus        64 P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~  143 (303)
                      |.++++++..+...+|+.+++++|++++++++.+.++.+ ....+..+++++..|.++|++|++|+|++++..+....+.
T Consensus         1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~-~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~   79 (342)
T TIGR00797         1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFM-FLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA   79 (342)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHH-HHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999888 5588899999999999999999999999999999999999


Q ss_pred             HHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Q 044433          144 LGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLT  222 (303)
Q Consensus       144 ~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~  222 (303)
                      ..++++.+ +++.+.+++..+++.+++..+.+..|+++++++.++.+++.+..+++|+.||++.+.+.++++.++|++++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~  159 (342)
T TIGR00797        80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN  159 (342)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence            99999988 45788899999988788888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH-hcC-CCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433          223 WIAVY-VLK-FGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML  290 (303)
Q Consensus       223 ~~li~-~~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  290 (303)
                      +++++ .++ +|+.|+++++.+++++..++..++.+|+++.+..|++..+..++.++++++.+.|..+..
T Consensus       160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~  229 (342)
T TIGR00797       160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRV  229 (342)
T ss_pred             HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHH
Confidence            99998 667 889999999999999999888887776444433332222334567899999999999987

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PRK00187 multidrug efflux protein NorA; Provisional

Probab=99.94  E-value=1.1e-24  Score=203.25  Aligned_cols=204  Identities=15%  Similarity=0.133  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++|+++|.++++........+|+.+++++|++++|+++++.++.+ +.+.+..|++.+.+++++|++|+||+|++
T Consensus       233 ~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~-l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~  311 (464)
T PRK00187        233 AALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVS-VAFMVPVGLSYAVTMRVGQHYGAGRLLEA  311 (464)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            67899999999999999999999999999999999999999999999999 56889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC--CH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ--SE---SIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNP  206 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~  206 (303)
                      ++..+.++.++.+.+++.+ +++.+.+++.+++..  ++   |+.+.+..|+++.+++.++.+++.+..+++||.||++.
T Consensus       312 ~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~  391 (464)
T PRK00187        312 RRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDART  391 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHH
Confidence            9999999999999998887 558889999999953  33   68899999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433          207 LASMAAGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL  257 (303)
Q Consensus       207 ~~~~~~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~  257 (303)
                      ++++++++. ++|+++++++.+.+++|+.|+|+++.+++++..++.....++
T Consensus       392 ~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~  443 (464)
T PRK00187        392 TFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW  443 (464)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence            999999987 999999999999888999999999999999888776665543

>PRK01766 multidrug efflux protein; Reviewed

Probab=99.94  E-value=2.5e-24  Score=200.61  Aligned_cols=205  Identities=16%  Similarity=0.100  Sum_probs=193.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++++++|..+++..+.+...+++.+++++|++++|+++++.++.+ +.+.+..|++.+.++.++|++|+||++++
T Consensus       236 ~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~  314 (456)
T PRK01766        236 AVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLGTVTVAAHQIALNFSS-LLFMLPLSLAMALTIRVGFELGAGRTLDA  314 (456)
T ss_pred             HHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence            67899999999999999999999999999999999999999999999999 45888999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..+.++.++..++++.. +++.+.+++..+|..|+++.+.+..|+++..+..++.+++.+.++++||.||++.+++++
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~  394 (456)
T PRK01766        315 RQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFIT  394 (456)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHH
Confidence            9999999999999999887 558889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      +++. ++++++.+++.+..++|+.|+|+++.+++++..++..+++++.
T Consensus       395 ~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~  442 (456)
T PRK01766        395 FIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKL  442 (456)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHH
Confidence            9987 7899999999887789999999999999999999888777654

>PRK10189 MATE family multidrug exporter; Provisional

Probab=99.94  E-value=8.2e-24  Score=197.64  Aligned_cols=209  Identities=15%  Similarity=0.032  Sum_probs=194.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +.+|+++++++|..+++++..+...+.+.+++++|++++|+++++.++.+ +.+.+..|++++.+++++|++|+||.|++
T Consensus       256 ~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~~~Aa~~I~~~i~~-~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a  334 (478)
T PRK10189        256 AIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMGTSVIAGNFIAFSIAA-LINLPGNALGSASTIITGTRLGKGQIAQA  334 (478)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            68899999999999999999999999999999999999999999999999 55889999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..+.+..++.+.++.++ +++.+++++..+|..|+|+.+.+..++++.++..++.+++.+..+.+||.||++.+++++
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~  414 (478)
T PRK10189        335 ERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVS  414 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHH
Confidence            9999999999999998887 558889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 044433          212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCK  262 (303)
Q Consensus       212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~  262 (303)
                      +++. ++.+++.+++...+++|+.|.|++..+++.+..++..+.+++.+|.+
T Consensus       415 ~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~  466 (478)
T PRK10189        415 MLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLW  466 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCcccc
Confidence            9986 77789999988777899999999999999999988888777666555

>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]

Probab=99.93  E-value=1.5e-23  Score=194.49  Aligned_cols=208  Identities=16%  Similarity=0.159  Sum_probs=196.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++++++|..+++++......+-+.+++++|++.+|+++++.++.+ +.+++..|++++.+++++|++|+||+|++
T Consensus       238 ~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a  316 (455)
T COG0534         238 KLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTVALAAYGIALRIAS-FIFMPPFGIAQAVTILVGQNLGAGNYKRA  316 (455)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            78999999999999999999999999999999999999999999999999 56999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..+.+..++..+++... +++++++++..+|..++++.+.+..++.+.....++.+.+.+..+++||.||++.+++++
T Consensus       317 ~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~  396 (455)
T COG0534         317 RRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIIS  396 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence            9999999999999998887 558999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccc
Q 044433          212 AGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCK  262 (303)
Q Consensus       212 ~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~  262 (303)
                      +++. .+.+++.+++.+.. +|..|.|++..+++.+..+...+++++.+|.+
T Consensus       397 ~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~  447 (455)
T COG0534         397 LLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRR  447 (455)
T ss_pred             HHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            9987 66789999998876 99999999999999999999998888765443

>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed

Probab=99.92  E-value=5.9e-23  Score=191.07  Aligned_cols=203  Identities=15%  Similarity=0.183  Sum_probs=187.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh-hHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGA-LELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~-~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      +..|++++++.|..+++....+...+.+.+++++|+ +++|+++++.++.+ +.+.+..|++.+.++++||++|+||+|+
T Consensus       231 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~~~~lAa~~i~~~i~~-~~~~~~~gi~~a~~~lvg~~~Ga~~~~~  309 (453)
T PRK09575        231 SLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGSALTVGAYAIVGYLMV-LYYLVAEGIAEGMQPPVSYYFGARQYDN  309 (453)
T ss_pred             HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH-HHHHHHHHHHHhhHHHHHHHhcCCChHH
Confidence            578999999999999999999999999999999885 68999999999998 5588999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ-SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLAS  209 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  209 (303)
                      +++..+.++.+++..+++.+ +++.+.+++..+|.. |+|+.+.+..|+++.+++.++.+++.+..+++||.||++.+++
T Consensus       310 ~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  389 (453)
T PRK09575        310 IKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALF  389 (453)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence            99999999999999999988 557799999999985 7899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          210 MAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       210 ~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      .++...++|++..+++...  +|+.|+|+++.+++++..++..++++++
T Consensus       390 ~~~~~~~v~ip~~~ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~~  436 (453)
T PRK09575        390 ISIGNMLIQLPFLFILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWRD  436 (453)
T ss_pred             HHHHhHHHHHHHHHHHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHHH
Confidence            9998888899999999776  7999999999999999888777766553

>TIGR01695 mviN integral membrane protein MviN

Probab=99.92  E-value=2.6e-22  Score=189.13  Aligned_cols=228  Identities=14%  Similarity=0.045  Sum_probs=197.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|++++++.|..+++....+...+|+.+.+.+|++++++++.+.++.++....+..+++++..|.++|++|+||+++.
T Consensus       220 ~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~  299 (502)
T TIGR01695       220 PGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNEL  299 (502)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            67899999999999999999999999999866699999999999999988553446788999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL  207 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  207 (303)
                      ++..+++..+...+++|++ .+..+++++..++.+    +++....+..++++++++.++.+++..+.+.+++.||++.+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~  379 (502)
T TIGR01695       300 RDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTP  379 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccC
Confidence            9999999999999999998 458889999988765    55778889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHH
Q 044433          208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASA  287 (303)
Q Consensus       208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  287 (303)
                      ++.++.+.++|+++++++++.  +|..|+|+|+.+++.+..++..++++|+....        +..+..+.+.|..+++.
T Consensus       380 ~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~as~  449 (502)
T TIGR01695       380 FINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRRLKGI--------LPFGVLKVLAKLVIASA  449 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcC--------CchHHHHHHHHHHHHHH
Confidence            999999999999999999887  89999999999999999988887776652110        11233455666666666


Q ss_pred             HHH
Q 044433          288 VML  290 (303)
Q Consensus       288 ~~~  290 (303)
                      +|.
T Consensus       450 ~m~  452 (502)
T TIGR01695       450 IIG  452 (502)
T ss_pred             HHH
Confidence            664

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK10367 DNA-damage-inducible SOS response protein; Provisional

Probab=99.87  E-value=1.2e-19  Score=168.16  Aligned_cols=199  Identities=15%  Similarity=0.061  Sum_probs=169.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++|++.|..+++.+......+-+.+++++|++++|+++++.++.+ +.+.+..|++++.+++++|++|+||+|++
T Consensus       229 ~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G~~alAa~~I~~~i~~-~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a  307 (441)
T PRK10367        229 GNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLGSDIIAVNAVLMTLLT-FTAYALDGFAYAVEAHSGQAYGARDGSQL  307 (441)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHcCCCHHHH
Confidence            46899999999999999999999999999999999999999999999999 55999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcC---CchHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQN---IVNPLA  208 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~~~~~  208 (303)
                      ++..+.+..++.++++..+ +++.+++++..+|..|+|+.+.+..++++.++..+.........++++|.+   |++.++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~  387 (441)
T PRK10367        308 LDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSM  387 (441)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            9999999999999999888 457788999999999999999999999998876333224444444555555   599999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          209 SMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       209 ~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      ++++++..+    ..+..+.  +|..|.|++..+++.+..++..+..+++
T Consensus       388 ~~~~~~~~~----~~~~~~~--~g~~Gvw~a~~~~~~~~~i~~~~~~~~~  431 (441)
T PRK10367        388 AVAAAGFAL----TLLTLPW--LGNHGLWLALTVFLALRGLSLAAIWRRH  431 (441)
T ss_pred             HHHHHHHHH----HHHHHHH--cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999887542    2222233  7999999999999999988887765544

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.86  E-value=8.4e-19  Score=162.74  Aligned_cols=206  Identities=15%  Similarity=0.091  Sum_probs=191.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      ++.|++++...|.+++....++..++|+.+.+.+++..+++++.+.++.+.+...+..++++...|..++...+||.++.
T Consensus       195 ~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~  274 (451)
T PF03023_consen  195 PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEF  274 (451)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            56899999999999999999999999999999999999999999999999776778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL  207 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  207 (303)
                      ++..++.+...+.+.+|++ .+..+++|+.+++.+    +.+-.+.....+.+++++.|+.++...+...+.+.||+|.+
T Consensus       275 ~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~  354 (451)
T PF03023_consen  275 RKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDTKTP  354 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhH
Confidence            9999999999999999998 558899999977752    45557788889999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcc
Q 044433          208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPS  260 (303)
Q Consensus       208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~  260 (303)
                      ++.++++.++|++++.++.+.  +|..|.++|+.++.++..++..+.++|+..
T Consensus       355 ~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~  405 (451)
T PF03023_consen  355 VRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG  405 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999998  999999999999999999999998887633

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.85  E-value=9.6e-19  Score=164.31  Aligned_cols=201  Identities=16%  Similarity=0.113  Sum_probs=172.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh------hHHHHH----HHHHHHHHHHHHHHHHhhHhhHHHHHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGA------LELAGA----SIASVGIQGLAYGIMLGMASAVQTICG  121 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~------~~laa~----~~a~~~~~~~~~~~~~~l~~a~~~~is  121 (303)
                      +..|+++++++|.+++++...+.+.+|+.++++ +++      ++.+.+    +.+.++.++. ..+..+++.+..|.++
T Consensus       222 ~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p~~s  300 (488)
T TIGR02900       222 ALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVPDIS  300 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHHHHH
Confidence            678999999999999999999999999999987 321      222222    2445566644 5677899999999999


Q ss_pred             HHhcccchhHHHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 044433          122 QAYGAKKYAAMGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQA  200 (303)
Q Consensus       122 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~  200 (303)
                      |++|+||+++.++..+++..+...+++|..+ +..++++++.++.+++    .+..+++++++..++..++....+++++
T Consensus       301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~l~~  376 (488)
T TIGR02900       301 EAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSILQG  376 (488)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999884 5788899998887554    3567899999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          201 QNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       201 ~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      .||+|.+++.++.+.++|++++++++...++|+.|+++|+.+++.+..++..+..+|.
T Consensus       377 ~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~  434 (488)
T TIGR02900       377 LGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN  434 (488)
T ss_pred             cCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999998832338999999999999999999988888664

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters

Probab=99.84  E-value=2e-21  Score=155.59  Aligned_cols=160  Identities=20%  Similarity=0.319  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHH
Q 044433           64 ASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLH  143 (303)
Q Consensus        64 P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~  143 (303)
                      |..+++++..+.+.+|+.+++++|++++++++++.++.+ ....+..|++++..+.+||++|++|+|++++..++++.++
T Consensus         1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~-~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~   79 (162)
T PF01554_consen    1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFS-ILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS   79 (162)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH-HHhhhcccccccccceeecccccccccccccccccccccc
Confidence            889999999999999999999999999999999999999 5588999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHH
Q 044433          144 LGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAF-LLHIVL  221 (303)
Q Consensus       144 ~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~i~~  221 (303)
                      .+++++..++ +.+.+++..+++.|+++.+.+.+|+++..++.++..+.....+++|+.||++.+++.++.+. ++|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l  159 (162)
T PF01554_consen   80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL  159 (162)
T ss_dssp             HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred             hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence            9999999855 88889999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HHH
Q 044433          222 TWI  224 (303)
Q Consensus       222 ~~~  224 (303)
                      +|+
T Consensus       160 ~yl  162 (162)
T PF01554_consen  160 AYL  162 (162)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            885

These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.83  E-value=1.7e-17  Score=153.00  Aligned_cols=229  Identities=13%  Similarity=0.060  Sum_probs=200.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      ...|++++...|..++....++..++|+.+.+.+.+..++.+..+.++.+.+.-.+..++++...|..|++..++|.++.
T Consensus       229 ~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~  308 (518)
T COG0728         229 PGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEF  308 (518)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHH
Confidence            57899999999999999999999999999999999999999999999999887789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCC----CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQ----SESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPL  207 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~  207 (303)
                      ++..+.+++++...++|.. .+..+++|+...+.+    +++-.....+.+..+..+.++..+..++...+.+++|+|+|
T Consensus       309 ~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP  388 (518)
T COG0728         309 LKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTP  388 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcC
Confidence            9999999999999999998 558899999977643    34445677788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHH
Q 044433          208 ASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASA  287 (303)
Q Consensus       208 ~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  287 (303)
                      +++++++.++|+.+++.+.+.  +|..|.++++.++.++....+++.++|+....+ .     +.|.... ..|+.+.++
T Consensus       389 ~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~-~-----~~~~~~~-~~k~~l~~~  459 (518)
T COG0728         389 MKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP-G-----RGWGLFL-ILKLLLASA  459 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-----chhhHHH-HHHHHHHHH
Confidence            999999999999999888888  889999999999999999998888887633221 1     2233333 566666666


Q ss_pred             HHH
Q 044433          288 VML  290 (303)
Q Consensus       288 ~~~  290 (303)
                      +|.
T Consensus       460 i~~  462 (518)
T COG0728         460 IMA  462 (518)
T ss_pred             HHH
Confidence            665

>TIGR02900 spore_V_B stage V sporulation protein B

Probab=99.81  E-value=1.8e-17  Score=155.61  Aligned_cols=228  Identities=13%  Similarity=0.104  Sum_probs=185.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHH
Q 044433           59 WLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQ  137 (303)
Q Consensus        59 l~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~  137 (303)
                      +|-+.|.++++++..+.+++|+.+++| +|++++|+++.+..+.++.......|++.+....++|..|++|++++++.++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~   81 (488)
T TIGR02900         2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK   81 (488)
T ss_pred             hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence            466899999999999999999999999 8999999999999988854333446899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHH
Q 044433          138 RAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFL  216 (303)
Q Consensus       138 ~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~  216 (303)
                      .+..+.++.+++..+ ++.+.+++...++.+++.    ..++++..+..++..+.....+++|+.+|.+..+..+.+..+
T Consensus        82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i  157 (488)
T TIGR02900        82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI  157 (488)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence            999999999988874 466777777776666543    346788888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHh-----cCCCchhHHHHHHHHHHHHHHHHHHHHHhCcccccc--ccCCCHHhhhChHHHHHHHHHHHHH
Q 044433          217 LHIVLTWIAVYV-----LKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKET--WTGLSVKAFTGICPYFKLTVASAVM  289 (303)
Q Consensus       217 ~~i~~~~~li~~-----~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~~~~  289 (303)
                      +|++++..++..     .++|+.|+++++.+++++..+...++.+++++.+..  +.+..+..++.+|++++.+.|..+.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~  237 (488)
T TIGR02900       158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS  237 (488)
T ss_pred             HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence            998776666542     246788999999999999888877766554332211  1111223356789999999999987


Q ss_pred             H
Q 044433          290 L  290 (303)
Q Consensus       290 ~  290 (303)
                      .
T Consensus       238 ~  238 (488)
T TIGR02900       238 R  238 (488)
T ss_pred             H
Confidence            6

SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.

>PRK15099 O-antigen translocase; Provisional

Probab=99.81  E-value=1.9e-17  Score=152.60  Aligned_cols=197  Identities=8%  Similarity=-0.062  Sum_probs=172.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTG-HLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~-~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      +..|++++++.|..++++..++.+.+|+.+++ ++|++++|+|+.+.++.+.....+..+++++..|.++++   +|.++
T Consensus       212 ~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~  288 (416)
T PRK15099        212 GLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRD  288 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHH
Confidence            67899999999999999999999999999998 599999999999999977454778899999999999995   67788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      .++..++.......++++.+++ ++++++++.++.+++  .+.+.+++++++++..+...+......+...++++.....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~  366 (416)
T PRK15099        289 ITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILA  366 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888844 789999999987765  2346778888888888887777777777788888888888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIV  256 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~  256 (303)
                      .+...++++++++++++.  +|..|+++++.+++++.+++......
T Consensus       367 ~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~  410 (416)
T PRK15099        367 EVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL  410 (416)
T ss_pred             HHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            988889999999999999  99999999999999998877665544

>PRK10459 colanic acid exporter; Provisional

Probab=99.80  E-value=6.9e-17  Score=152.01  Aligned_cols=199  Identities=14%  Similarity=0.037  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      +..|++++++.|.+.+++...+.+.+|+.++|+ +|++++|.|+.+.++.+.+...+...++....|..++.  ++|.++
T Consensus       204 ~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~  281 (492)
T PRK10459        204 ASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEK  281 (492)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHH
Confidence            678999999999999999999999999999999 89999999999999988654556666778888999886  578889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      .++.+++...+...+++|+.+ +..++++++.++.+++  ...+...++++++...+..+.......+++.||+|..++.
T Consensus       282 ~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~  359 (492)
T PRK10459        282 LRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKW  359 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHH
Confidence            999999999999999999884 5888899987776554  4567889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL  257 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~  257 (303)
                      +++..+++++..+.+...  +|..|+++|+.+++.+......+++.|
T Consensus       360 ~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~~  404 (492)
T PRK10459        360 NVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMIK  404 (492)
T ss_pred             HHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888888888887776  899999999999999988888887744

>TIGR01695 mviN integral membrane protein MviN

Probab=99.76  E-value=8.3e-16  Score=144.96  Aligned_cols=226  Identities=11%  Similarity=0.039  Sum_probs=174.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHH-HHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHHhcccchhHHHH
Q 044433           58 LWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALEL-AGASIASVGIQGLAYGIM-LGMASAVQTICGQAYGAKKYAAMGI  134 (303)
Q Consensus        58 il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~l-aa~~~a~~~~~~~~~~~~-~~l~~a~~~~is~~~g~~~~~~~~~  134 (303)
                      +.|-+.-.+++++...+++++|..++++ +|++++ ++++.+.++.+....... .|++++..+...++.+++  |++++
T Consensus         2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~   79 (502)
T TIGR01695         2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR   79 (502)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence            4566777889999999999999999999 999999 899999998874422222 357777666665554333  67777


Q ss_pred             HHHHHHHHHHHHHH-HHH-HHHHhhHHHHHHc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          135 ICQRAMVLHLGAAV-IPT-FLYWYSGPTLRAM--GQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       135 ~~~~~~~~~~~~~i-~~~-~~~~~~~~il~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      ....+.......+. ... +.+.+++++..++  +.+++..+.+..|++++.++.++..+....++++|+.||.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  159 (502)
T TIGR01695        80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS  159 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence            77777776665544 344 4477788888887  4567777899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHH--HHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIA--LTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAV  288 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaa--lat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  288 (303)
                      +++..+++++..+++..  ++|..|++  +++.+++.+..++..++++|++. + .+.++. ..++.++++++.+.|..+
T Consensus       160 ~i~~~i~~i~~~~~~~~--~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~-~~~~~~-~~~~~~k~~l~~~~p~~~  234 (502)
T TIGR01695       160 PILFNIGVILSLLFFDW--NYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-L-LKPRFN-FRDPGLKRFLKLFLPTTL  234 (502)
T ss_pred             HHHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-c-ccCcCC-CCChhHHHHHHHHHHHHH
Confidence            99988887775555544  49999999  99999999988887777665431 1 111111 134678999999999998


Q ss_pred             HH
Q 044433          289 ML  290 (303)
Q Consensus       289 ~~  290 (303)
                      ..
T Consensus       235 ~~  236 (502)
T TIGR01695       235 GS  236 (502)
T ss_pred             HH
Confidence            76

This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.

>PRK15099 O-antigen translocase; Provisional

Probab=99.74  E-value=9.6e-16  Score=141.30  Aligned_cols=224  Identities=13%  Similarity=0.034  Sum_probs=175.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHH
Q 044433           58 LWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIIC  136 (303)
Q Consensus        58 il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~  136 (303)
                      +.|-+.-...+++...+.+++-..++.+ +|++++|.++....+..........|++++....++|+  ++|+|+.++..
T Consensus         3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~   80 (416)
T PRK15099          3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV   80 (416)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence            4455666777888888888888888899 99999999999888888554444777778878888888  68889999999


Q ss_pred             HHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH
Q 044433          137 QRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAF  215 (303)
Q Consensus       137 ~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~  215 (303)
                      +.++.+.+..++..+ +++.+.+++...++++++.    ..++.+..+..++..+....++.+|+.||++.++...+++.
T Consensus        81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~  156 (416)
T PRK15099         81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS  156 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998877 5588889998877776642    24556666666677788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433          216 LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML  290 (303)
Q Consensus       216 ~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  290 (303)
                      ++|+.+ +++...+ .|+.|+++|+.+++.+..+..+++++|+++.+..+.+++ .+++.+|++++.|.|...+.
T Consensus       157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~k~ll~~g~p~~~~~  228 (416)
T PRK15099        157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPS-WDNGLAGQLGKFTLMALITS  228 (416)
T ss_pred             HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhcc-CCHHHHHHHHHHHHHHHHHH
Confidence            999877 4444432 499999999999999988777777766543222211222 23566789999999988876

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=99.73  E-value=2.1e-15  Score=141.51  Aligned_cols=185  Identities=17%  Similarity=0.174  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      +..|+++++++|...+.+...+.+.+|+.++++ +|++++|.|+.+.++.. ....+..+++....|.+++.+.++|.++
T Consensus       210 ~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~-~~~~~~~~l~~~l~P~~s~~~~~~~~~~  288 (480)
T COG2244         210 ALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVS-LLLIVASALNRVLFPALSRAYAEGDRKA  288 (480)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHH-HHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            689999999999999999999999999999999 89999999998888888 5588888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGIICQRAMVLHLGAAVIPTF-LYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~~~~~~~~~~~~~i~~~~-~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      .++..+++..+....++|..+ +..+++++...+.+++.  ..+...+.++++..++..+.......+++.|+++..++.
T Consensus       289 ~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  366 (480)
T COG2244         289 LKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLI  366 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHH
Confidence            999999999999999999984 48888899987766553  237788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLS  243 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s  243 (303)
                      +.++.++|+++++++++.  +|..|++.++ .+
T Consensus       367 ~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~  396 (480)
T COG2244         367 SLISALLNLILNLLLIPR--FGLIGAAIAT-AS  396 (480)
T ss_pred             HHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence            999999999999999998  8999999999 44

>TIGR00797 matE putative efflux protein, MATE family

Probab=99.54  E-value=3.9e-13  Score=120.52  Aligned_cols=128  Identities=20%  Similarity=0.177  Sum_probs=119.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++++++|.+++++...+...+|+.+++++|++++++++.+.++.+ +...+..+++++..|.+++++|+||.++.
T Consensus       213 ~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g~~~v~~~~~a~~~~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  291 (342)
T TIGR00797       213 EVLKRLLKLGLPIAFRVILESLSFALLALLVARLGSIALAAHQIALNVES-LLFMPAFGFGIAVSILVGQALGAGDPKRA  291 (342)
T ss_pred             HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCCCCHHHH
Confidence            68899999999999999999999999999999999999999999999998 55888899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGL  181 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~  181 (303)
                      ++..+++.++...++++.. +++++++++..++..|+++.+.+..++++.
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~  341 (342)
T TIGR00797       292 KEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV  341 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988 457889999999999999999999888764

The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.

>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions

Probab=99.37  E-value=1.2e-09  Score=101.74  Aligned_cols=199  Identities=16%  Similarity=0.071  Sum_probs=158.5

Q ss_pred             cCh-hHHHHHHHHHHHHHHHHHHHH-HhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHH
Q 044433           86 LGA-LELAGASIASVGIQGLAYGIM-LGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLR  162 (303)
Q Consensus        86 ~g~-~~laa~~~a~~~~~~~~~~~~-~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~  162 (303)
                      +|. .+..+|..+.++.+.+...+. .++.++..|...+.. ++++|+.++..+....+..+..+.++ +.+++++++..
T Consensus         5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~   83 (451)
T PF03023_consen    5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR   83 (451)
T ss_pred             hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444 456788889999885533343 458999999999999 89999999999999988888888877 44888999998


Q ss_pred             Hc--CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCC---chhHH
Q 044433          163 AM--GQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFG---LMGIA  237 (303)
Q Consensus       163 ~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G---~~Gaa  237 (303)
                      ++  +.+++..+.+.+++++..+..++.++..+..+++|+++|...+....++..+..++...++...  .|   +.+.+
T Consensus        84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la  161 (451)
T PF03023_consen   84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA  161 (451)
T ss_pred             HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence            88  4577888999999999999999999999999999999999999988887666655555555445  67   89999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433          238 LTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML  290 (303)
Q Consensus       238 lat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  290 (303)
                      +++.++..+..++.+...+|.....+...++.   .++.+++++...|..+..
T Consensus       162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~p~~l~~  211 (451)
T PF03023_consen  162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWR---DPNLKRFLKLAIPLLLSS  211 (451)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCcccccCCCC---ChhHHHHHHHHHHHHHHH
Confidence            99999999999888888877533211111111   245788999999998876

Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].

>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]

Probab=99.20  E-value=4.8e-11  Score=110.79  Aligned_cols=207  Identities=16%  Similarity=0.093  Sum_probs=183.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCh--hHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchh
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGA--LELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYA  130 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~--~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~  130 (303)
                      +.+++++++++|..+...++.-...+-....|.+++  .++++.++...... ..+++..+++.+.++.++..+|+||.+
T Consensus       244 ~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~-~~~~~~~~~~~a~strv~neLGag~p~  322 (473)
T KOG1347|consen  244 DSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGG-WHLMIPGAFSAAVSTRVSNELGAGKPK  322 (473)
T ss_pred             hhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHH-HHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence            788999999999999999999999999999999875  68899999888888 558888899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHH
Q 044433          131 AMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLAS  209 (303)
Q Consensus       131 ~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~  209 (303)
                      +++.....+...++.+++... .++...+.+...|..|+++.+...+..+.++...+..+.+.++.+..+|.|..+...+
T Consensus       323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~  402 (473)
T KOG1347|consen  323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV  402 (473)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence            999999999999999998877 5577777888999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCcc
Q 044433          210 MAAGAF-LLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPS  260 (303)
Q Consensus       210 ~~~~~~-~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~  260 (303)
                      +++.+. ++-++....+-+..++|..|.|.+...+..+....+.....+..|
T Consensus       403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW  454 (473)
T KOG1347|consen  403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDW  454 (473)
T ss_pred             EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccH
Confidence            999976 666888888887788999999999999966666666655554433

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=99.12  E-value=2e-07  Score=80.27  Aligned_cols=216  Identities=15%  Similarity=0.111  Sum_probs=145.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHH
Q 044433           59 WLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQ  137 (303)
Q Consensus        59 l~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~  137 (303)
                      +|-+.-...+++...+.+++-..++.| +|+++.|.++....+.++.......|+.++..-.+++...+  .++.+....
T Consensus         2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~   79 (273)
T PF01943_consen    2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS   79 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence            455566778888888899999999999 99999999999999988554444677777776666665543  344444444


Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Q 044433          138 RAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLL  217 (303)
Q Consensus       138 ~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~  217 (303)
                      .......+.++.........    ..++.++.    ...+........++.........++|+.++.+......+...++
T Consensus        80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (273)
T PF01943_consen   80 SVLFLLLIFSLIFLLILLIA----SFFGNPSL----SLILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL  151 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHcCCchH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444443333332221    13333322    12222222222256778888899999999999999999998888


Q ss_pred             HHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433          218 HIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML  290 (303)
Q Consensus       218 ~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  290 (303)
                      ..++..+++.. +.+..+..++..++..+..++..++.+|+.+  ..+.   ...++..+++++.+.|..+..
T Consensus       152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~~  218 (273)
T PF01943_consen  152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--PRFS---FFSKKFFKEILRFGLPLFLSS  218 (273)
T ss_pred             HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--cccc---ccchHHHHHHHHHHHHHHHHH
Confidence            87777666654 2348999999999999888888887776532  1122   222567888899999888765

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]

Probab=99.08  E-value=5.5e-07  Score=83.90  Aligned_cols=231  Identities=15%  Similarity=0.078  Sum_probs=165.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCh-hHHHHHHHHHHHHHHHHHHHHHh-hHhhHHHHHHHHhcccch
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGA-LELAGASIASVGIQGLAYGIMLG-MASAVQTICGQAYGAKKY  129 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~-~~laa~~~a~~~~~~~~~~~~~~-l~~a~~~~is~~~g~~~~  129 (303)
                      +..|.....+.-.++    .-+..++-..+++. +|. ....|+.++.++-|.+--.+..| ++++..|...+...++..
T Consensus         8 sllks~~~vs~~Tl~----SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~   83 (518)
T COG0728           8 SLLKSLIIVSSATLL----SRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGE   83 (518)
T ss_pred             HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchh
Confidence            344555555554444    44455665555555 666 57789999999999644444443 689999999999988888


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHH-HHcCCC--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 044433          130 AAMGIICQRAMVLHLGAAVIPTFL-YWYSGPTL-RAMGQS--ESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVN  205 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~il-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  205 (303)
                      |+.++...........+.+...++ .++.+.+. ..++..  ++....+....+++.+..++.++.....++|++.++..
T Consensus        84 ~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~  163 (518)
T COG0728          84 EAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFF  163 (518)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeec
Confidence            888888888776777777666644 66777777 444442  33333688888999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHH
Q 044433          206 PLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVA  285 (303)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  285 (303)
                      .+.+.-+.-.+.-+.....+.+..+....+.++++.++-+...++.+..++|.+...+....++   -++++++.+...|
T Consensus       164 ~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~---~~~lk~~~~~~~p  240 (518)
T COG0728         164 IPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFK---DPGLKRFLKLMLP  240 (518)
T ss_pred             hhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCC---chhHHHHHHHHHH
Confidence            9988887665555544454444433247788999999999999999999988753332222222   1477888888888


Q ss_pred             HHHHH
Q 044433          286 SAVML  290 (303)
Q Consensus       286 ~~~~~  290 (303)
                      ..+..
T Consensus       241 ~~l~~  245 (518)
T COG0728         241 ALLGV  245 (518)
T ss_pred             HHHHH
Confidence            88876

>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain

Probab=98.95  E-value=1.9e-08  Score=78.83  Aligned_cols=81  Identities=22%  Similarity=0.245  Sum_probs=75.6

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 044433          178 ARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL  257 (303)
Q Consensus       178 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~  257 (303)
                      +++++++.++..+....+..+++.||++..++.++.+.++|+++++++++.  +|..|+++|+.+++.+......++.+|
T Consensus         2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k   79 (146)
T PF14667_consen    2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK   79 (146)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578889999999999999999999999999999999999999999999988  999999999999999999999888887


Q ss_pred             Ccc
Q 044433          258 SPS  260 (303)
Q Consensus       258 ~~~  260 (303)
                      +-+
T Consensus        80 ~~~   82 (146)
T PF14667_consen   80 KIG   82 (146)
T ss_pred             HhC
Confidence            633

>PRK10459 colanic acid exporter; Provisional

Probab=98.94  E-value=5e-07  Score=85.22  Aligned_cols=214  Identities=10%  Similarity=0.069  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHH
Q 044433           56 RLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGI  134 (303)
Q Consensus        56 ~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~  134 (303)
                      ++..+=+....++++...+.+++-...++| +|+++.|.++.+..+.++.......|++.+.    .|.   +|.  .++
T Consensus         5 ~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~ai----i~~---~~~--~~~   75 (492)
T PRK10459          5 EKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASI----IQR---QDI--SHL   75 (492)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHH----Hhc---ccC--CHH
Confidence            455666667788889999999999999999 9999999999999998854344444555543    232   111  123


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Q 044433          135 ICQRAMVLHLGAAVIPTFL-YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAG  213 (303)
Q Consensus       135 ~~~~~~~~~~~~~i~~~~~-~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~  213 (303)
                      .......+....++...++ +.+.+++..+++ +++.    ...+.+..+..++..+.....+.+|+..+.+........
T Consensus        76 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~~  150 (492)
T PRK10459         76 QLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEIS  150 (492)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHH
Confidence            3445556666666665544 555555555554 4432    345677777777788888889999999999988888887


Q ss_pred             HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhCccccccccCCCHHhhhChHHHHHHHHHHHHHH
Q 044433          214 AFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKETWTGLSVKAFTGICPYFKLTVASAVML  290 (303)
Q Consensus       214 ~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  290 (303)
                      ..++.......+.. .++|..+..+++.++..+..+......+++ + ++. ..++   ++.+|++++.+.|.....
T Consensus       151 ~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~-~-~~~-~~~~---~~~~k~ll~~~~~~~~~~  220 (492)
T PRK10459        151 AVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI-Y-RPA-LHFS---LASVKPNLSFGAWQTAER  220 (492)
T ss_pred             HHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc-C-Ccc-ceec---HHHHHHHHhhhHHHHHHH
Confidence            77766666555543 468999999999999877665544332222 1 111 1122   355788899898887764

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=98.79  E-value=1.4e-05  Score=68.04  Aligned_cols=167  Identities=18%  Similarity=0.175  Sum_probs=109.9

Q ss_pred             HHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 044433           75 LTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFL  153 (303)
Q Consensus        75 ~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~  153 (303)
                      .+++-..+++| +|+++.|.++....+..+.......|+.+    .+.+ ..++|+++.++..+.......+.++...++
T Consensus         3 ~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (251)
T PF13440_consen    3 INFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQ----SLVR-SAARDKQDIRSLLRFSLLVSLLLAVILAIL   77 (251)
T ss_pred             HHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHH----HHHH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677788888 99999999999988888443322344433    3333 234556666666666665555544444332


Q ss_pred             HHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 044433          154 YWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGL  233 (303)
Q Consensus       154 ~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~  233 (303)
                         ...+...++ +++    ...++....+..++........+.+++.+|.+..........++...+...+... +.+.
T Consensus        78 ---~~~~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  148 (251)
T PF13440_consen   78 ---AILIAYFFG-DPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLNL  148 (251)
T ss_pred             ---HHHHHHHhC-Chh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-HhhH
Confidence               111222333 332    2334556667778888999999999999999999999999888775444444432 2488


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Q 044433          234 MGIALTLSLSWWFLVIINALYI  255 (303)
Q Consensus       234 ~Gaalat~~s~~~~~~~~~~~l  255 (303)
                      .+..++..++..+..+......
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~  170 (251)
T PF13440_consen  149 WSILLAFIISALLALLISFYLL  170 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            8899998888877766655533

>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]

Probab=98.66  E-value=6.2e-06  Score=77.49  Aligned_cols=221  Identities=12%  Similarity=0.088  Sum_probs=147.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA  131 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~  131 (303)
                      ...+++.|-+.-...+++...+..++-...++| +|+++.|.++.+..+.+++......|+..+..-.+++...+++++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~   82 (480)
T COG2244           3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL   82 (480)
T ss_pred             hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence            345778888888889999999999999999999 9999999999999999966555557888888888888877666666


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHH
Q 044433          132 MGII-CQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASM  210 (303)
Q Consensus       132 ~~~~-~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~  210 (303)
                      .... ......+....+++.........+.      ++    .....+.......+.........+.+|+.++.+.....
T Consensus        83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  152 (480)
T COG2244          83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS  152 (480)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence            6665 5555555555555544333322222      22    23345667788888889999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh-CccccccccCCCHHhhhChHHHHHHHHHHHHH
Q 044433          211 AAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVL-SPSCKETWTGLSVKAFTGICPYFKLTVASAVM  289 (303)
Q Consensus       211 ~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  289 (303)
                      .+.. ..-+...+.+..   ....+..++...+..........+.++ +++..+.  .+ +..++.+++.++.++|....
T Consensus       153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~p~~~~  225 (480)
T COG2244         153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRP--IL-RFSLALLKELLRFGLPLLLS  225 (480)
T ss_pred             HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccc--cc-CchhHHHHHHHHHhhHHHHH
Confidence            4444 111111122211   345566666666666655555555542 2111111  11 11356788899999999888


Q ss_pred             H
Q 044433          290 L  290 (303)
Q Consensus       290 ~  290 (303)
                      .
T Consensus       226 ~  226 (480)
T COG2244         226 S  226 (480)
T ss_pred             H
Confidence            6

>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences

Probab=98.65  E-value=8.7e-05  Score=64.13  Aligned_cols=236  Identities=14%  Similarity=-0.004  Sum_probs=141.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChh---HHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccch
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGAL---ELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKY  129 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~---~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~  129 (303)
                      .+.++++++-+|+.++.+...+...+-+.-+++..++   .+|+|+++..+.- +...+...+-+.     +-.++.+++
T Consensus         8 ~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~l-f~~sp~~~~~~i-----gl~~V~s~r   81 (345)
T PF07260_consen    8 TSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLML-FFASPLSMFHHI-----GLVFVNSKR   81 (345)
T ss_pred             chHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHH-HHhChhhhhHHH-----HHHHhcchh
Confidence            4678999999999999999999999999999874433   4899999988876 334444444444     445554433


Q ss_pred             hHHHHHHHHHHHHHHHHH-HHHHHH-HHhhH-HHH-HHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCch
Q 044433          130 AAMGIICQRAMVLHLGAA-VIPTFL-YWYSG-PTL-RAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVN  205 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~-i~~~~~-~~~~~-~il-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~  205 (303)
                      +  ++....+...+.++. +...++ +.-.+ .++ .+++.+|++.+.+...+.++.+-.++.++....++++.-..++.
T Consensus        82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~  159 (345)
T PF07260_consen   82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW  159 (345)
T ss_pred             h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence            3  333333332222222 222222 22223 333 77799999999999999999999999999999999888667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCCCc-hhHHH---HHHHHHHHHH-HHHHHHHHhCccccccccCCCHHhhhChHHHH
Q 044433          206 PLASMAAGAFLLHIVLTWIAVYVLKFGL-MGIAL---TLSLSWWFLV-IINALYIVLSPSCKETWTGLSVKAFTGICPYF  280 (303)
Q Consensus       206 ~~~~~~~~~~~~~i~~~~~li~~~~~G~-~Gaal---at~~s~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  280 (303)
                      .....++...+.-++...+++.. +... .+.++   +...+..+.+ .+.+-++..-....+...+...+.-..+++++
T Consensus       160 iV~~aSI~~v~~qvV~v~~ll~~-~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l  238 (345)
T PF07260_consen  160 IVGSASIADVIAQVVLVAILLSM-HLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRML  238 (345)
T ss_pred             EeehHHHHHHHHHHHHHHHHHcc-ccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHH
Confidence            66666666554445444444422 1111 12211   1111122211 11122222211112222233334456788999


Q ss_pred             HHHHHHHHHH---HHHHHHh
Q 044433          281 KLTVASAVML---WFVQILP  297 (303)
Q Consensus       281 ~~~~p~~~~~---~~~~~~~  297 (303)
                      +...|.+..+   |....++
T Consensus       239 ~F~~PL~~~~~tq~~SrplV  258 (345)
T PF07260_consen  239 KFWWPLALVLATQRISRPLV  258 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            9999999887   6655544

The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane

>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []

Probab=98.57  E-value=2e-05  Score=74.70  Aligned_cols=203  Identities=14%  Similarity=0.055  Sum_probs=163.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccch--
Q 044433           55 SRLLWLLSGASIVVSIFNYMLTFVTLMFTGH---LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKY--  129 (303)
Q Consensus        55 ~~~il~~~~P~~~~~~~~~l~~~id~~~v~~---~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~--  129 (303)
                      -++++++....+.+.+.-.+.+--|...+..   .+.++.|.|++++++.++.+=.+...+=.+.-...++....++.  
T Consensus       252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~  331 (549)
T PF04506_consen  252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK  331 (549)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence            3789999999999999999999999999988   45679999999999999776777778888888888887754322  


Q ss_pred             -------hHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc
Q 044433          130 -------AAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQ  201 (303)
Q Consensus       130 -------~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~  201 (303)
                             ++..+.+...+++...+++.+. ++...++.++.+++++.-....+...++.++...|+.+++.++-++.++.
T Consensus       332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~  411 (549)
T PF04506_consen  332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV  411 (549)
T ss_pred             hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence                   4567778888888888887776 44777888888886655444556788999999999999999999999998


Q ss_pred             CCchHHHHHHHH---HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          202 NIVNPLASMAAG---AFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       202 g~~~~~~~~~~~---~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      .+.+-.-..+-.   ..++.+..+++|+.. ++|..|..+|..+......+....++++.
T Consensus       412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~  470 (549)
T PF04506_consen  412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY  470 (549)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776554444333   346667788888886 79999999999999999888888888764

RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane

>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.01  E-value=0.00058  Score=61.79  Aligned_cols=201  Identities=15%  Similarity=0.074  Sum_probs=148.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhH-
Q 044433           56 RLLWLLSGASIVVSIFNYMLTFVTLMFTGH---LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAA-  131 (303)
Q Consensus        56 ~~il~~~~P~~~~~~~~~l~~~id~~~v~~---~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~-  131 (303)
                      ++..+...-..-+...-.+.+-=|..++..   .+-.+.|.|..+++..++.+=.+...+--..-...+|....++.|+ 
T Consensus       239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~  318 (530)
T KOG2864|consen  239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV  318 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence            556666667777888888888888888874   4445778888888877766666666676666677777666555554 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 044433          132 --MGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLA  208 (303)
Q Consensus       132 --~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  208 (303)
                        +..+....+.....+++.+. ++...++.++.+.+++.-....+...+++++...|+.+++.+.-++.++.++.+-.-
T Consensus       319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~  398 (530)
T KOG2864|consen  319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID  398 (530)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence              44556666666666675555 446677788888877655455566789999999999999999999999887765544


Q ss_pred             H---HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          209 S---MAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       209 ~---~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      .   ......+..++.+|+|+..  +|..|-.+|..+...+......+++++.
T Consensus       399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~  449 (530)
T KOG2864|consen  399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY  449 (530)
T ss_pred             hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3   3333446678899999999  8889999999999888777777766653

>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide

Probab=97.68  E-value=0.00041  Score=59.55  Aligned_cols=71  Identities=8%  Similarity=0.061  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHh
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAY  124 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~  124 (303)
                      +..|++++.+.|..++++...+...+|+.++++ .|++++|.|+.+.++.. ....+...+.+...|.+++.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g~~~vg~Y~~a~~l~~-~~~~~~~~~~~~~~P~~s~l~  273 (273)
T PF01943_consen  202 KFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLGPEAVGIYSVAYRLAS-AISFLLSSISTVLFPRLSRLW  273 (273)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhC
Confidence            788999999999999999999999999999999 89999999999999999 447788889999999998863

The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane

>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein

Probab=96.70  E-value=0.017  Score=48.96  Aligned_cols=67  Identities=15%  Similarity=0.070  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHH
Q 044433           57 LLWLLSGASIVVSIFNYMLTFVTLMFTGH-LGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQA  123 (303)
Q Consensus        57 ~il~~~~P~~~~~~~~~l~~~id~~~v~~-~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~  123 (303)
                      +.++.+.|..++++...+.+.+|..+++. +|++++|.|+.+.++.+.+...+..++++...|.++|.
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~  251 (251)
T PF13440_consen  184 RLLKYGLPFSLSSLLSWLLSQIDRLLIGYFLGPEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM  251 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            37999999999999999999999999999 99999999999999999553378889999999988863

>COG4267 Predicted membrane protein [Function unknown]

Probab=87.60  E-value=22  Score=32.34  Aligned_cols=139  Identities=11%  Similarity=0.105  Sum_probs=94.7

Q ss_pred             HHHHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHh
Q 044433          104 LAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLI  182 (303)
Q Consensus       104 ~~~~~~~~l~~a~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~  182 (303)
                      +...+..|++...+-.+|...=+||++++...+.-...+....+..+. +++        ....+.     ...|=...+
T Consensus        72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf--------~~~~~~-----si~yk~l~~  138 (467)
T COG4267          72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVF--------FVNNQY-----SIVYKILAC  138 (467)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhh--------hhcCch-----hHHHHHHHH
Confidence            445566677777778888888788888877766555544444433322 111        111111     111222333


Q ss_pred             hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          183 PQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVYVLKFGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       183 ~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~i~~~~~li~~~~~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      .....++.......++.+.+|.+.....-.++.++.+.+..++-.   .++.|.-++-.++..........++.|.
T Consensus       139 ~~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~  211 (467)
T COG4267         139 ALFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRY  211 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            445566777788889999999999999999999888888877754   4899999999999998888877777764

>COG4267 Predicted membrane protein [Function unknown]

Probab=82.06  E-value=40  Score=30.71  Aligned_cols=113  Identities=11%  Similarity=0.009  Sum_probs=61.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHH
Q 044433          130 AAMGIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLA  208 (303)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~  208 (303)
                      ++.....++.+.=.+-+-..+. .++..++.++.+++-++    .-.+.+.+-..+.-.....+.+-.+.-=-++-+..+
T Consensus       320 ~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~vd~lg~s~~i~f~~ll~i~lyfd~r~i~l  395 (467)
T COG4267         320 KKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFYVDVLGVSCQIVFMSLLNIFLYFDYRRIAL  395 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence            3444445555544444544444 45777888888887654    222333444444433333333333333345666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHh-cCCCchhHHHHHHHHHHH
Q 044433          209 SMAAGAFLLHIVLTWIAVYV-LKFGLMGIALTLSLSWWF  246 (303)
Q Consensus       209 ~~~~~~~~~~i~~~~~li~~-~~~G~~Gaalat~~s~~~  246 (303)
                      ..+..-.+.|.++.+++... .++--.|..+|..+.-.+
T Consensus       396 ~~t~~fli~N~ilT~i~l~lgp~~~g~gff~a~fl~vlv  434 (467)
T COG4267         396 ELTALFLISNGILTFIFLELGPGYYGVGFFLASFLYVLV  434 (467)
T ss_pred             hhhhHHHHHhHHHHHHHHHhCccceehHHHHHHHHHHHH
Confidence            77777778899998888653 234444554554444333

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	303
3mkt_A	460	Structure Of A Cation-Bound Multidrug And Toxin Com		1e-04

>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/210 (21%), Positives = 98/210 (46%), Gaps = 7/210 (3%)
Query: 54  ESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIA-SVGIQGLAYGIMLGM 112
           E+  L  L+   ++ S+    + FV  +  G + A+++A  SIA S+ +  + +G+  G+
Sbjct: 10  EASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV--GL 67
Query: 113 ASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAE 172
             A+  +  Q  GA +   +     + ++L L  +V    + + +   +R M   E++A 
Sbjct: 68  LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMAT 127
Query: 173 QGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVY----V 228
           +   +   +I  + A+ L   ++ F    ++  P   +     LL+I L WI VY     
Sbjct: 128 KTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGA 187
Query: 229 LKFGLMGIALTLSLSWWFLVIINALYIVLS 258
            + G +G  +  ++ +W ++++   YIV S
Sbjct: 188 PELGGVGCGVATAIVYWIMLLLLLFYIVTS 217
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	6e-30
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	7e-04

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score =  117 bits (294), Expect = 6e-30
 Identities = 50/248 (20%), Positives = 105/248 (42%), Gaps = 7/248 (2%)

Query: 51  FGWESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIML 110
           +  E+  L  L+   ++ S+    + FV  +  G + A+++A  SIA+  I   +    +
Sbjct: 7   YKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAA-SIWLPSILFGV 65

Query: 111 GMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESI 170
           G+  A+  +  Q  GA +   +     + ++L L  +V    + + +   +R M   E++
Sbjct: 66  GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125

Query: 171 AEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAAGAFLLHIVLTWIAVY--- 227
           A +   +   +I  + A+ L   ++ F    ++  P   +     LL+I L WI VY   
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKF 185

Query: 228 -VLKFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTV 284
              + G +G  +  ++ +W ++++   YIV S        +          +   F+L  
Sbjct: 186 GAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGF 245

Query: 285 ASAVMLWF 292
             A  L+F
Sbjct: 246 PVAAALFF 253

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 4/120 (3%)

Query: 37  LERRRVAFRWWPRLFGWESRLLWLLSGASIVVSIFNYMLTF-VTLMFTGHLGALELAGAS 95
           L   +V   +         RL  L  G  +  ++F  +  F V  +    LG+  +A   
Sbjct: 220 LAHVKVFETFHKPQPKELIRLFRL--GFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQ 277

Query: 96  IASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAMGIICQRAMVLHLGAAVIPTFLYW 155
           +A      L +   + + +AV    G   G +      I     ++  L  A I   L  
Sbjct: 278 VAL-NFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTV 336

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.95
3mkt_A	460	Multi antimicrobial extrusion protein (Na(+)/drug	99.92

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.95  E-value=6.8e-27  Score=216.01  Aligned_cols=237  Identities=20%  Similarity=0.317  Sum_probs=214.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      ++.|++++.++|.+++++...+.+.+|+.+++++|++++|+++.+.++.+ ....+..+++.+..+.++|++|++|+++.
T Consensus         9 ~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~-~~~~~~~g~~~~~~~~is~~~g~~~~~~~   87 (460)
T 3mkt_A            9 KEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWL-PSILFGVGLLMALVPVVAQLNGAGRQHKI   87 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHH-HHHHHHHHHHHHHGGGCTTTTSSSSTTTH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCChhHH
Confidence            68899999999999999999999999999999999999999999999977 44778889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPTFLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMAA  212 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~  212 (303)
                      ++.++.++.+..+++++..+++.+.++++.+++.+++..+.+..|+++++++.++..+....++++|+.||++.++..++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  167 (460)
T 3mkt_A           88 PFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGF  167 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            99999999999999999876678889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh-c---CCCchhHHHHHHHHHHHHHHHHHHHHHhCccccc--cccCCCHHhhhChHHHHHHHHHH
Q 044433          213 GAFLLHIVLTWIAVYV-L---KFGLMGIALTLSLSWWFLVIINALYIVLSPSCKE--TWTGLSVKAFTGICPYFKLTVAS  286 (303)
Q Consensus       213 ~~~~~~i~~~~~li~~-~---~~G~~Gaalat~~s~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~  286 (303)
                      ++.++|+++++++++. +   ++|+.|+++|+.+++++..++..++++++++.++  .++++.+.+++.++++++.++|.
T Consensus       168 ~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~  247 (460)
T 3mkt_A          168 IGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPV  247 (460)
T ss_dssp             HHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHH
Confidence            9999999999999975 4   6999999999999999999988888877654332  12333344578899999999999


Q ss_pred             HHHH
Q 044433          287 AVML  290 (303)
Q Consensus       287 ~~~~  290 (303)
                      .++.
T Consensus       248 ~~~~  251 (460)
T 3mkt_A          248 AAAL  251 (460)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9986

>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A

Probab=99.92  E-value=4.5e-24  Score=197.08  Aligned_cols=205  Identities=12%  Similarity=0.061  Sum_probs=191.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhcccchhHH
Q 044433           53 WESRLLWLLSGASIVVSIFNYMLTFVTLMFTGHLGALELAGASIASVGIQGLAYGIMLGMASAVQTICGQAYGAKKYAAM  132 (303)
Q Consensus        53 ~~~~~il~~~~P~~~~~~~~~l~~~id~~~v~~~g~~~laa~~~a~~~~~~~~~~~~~~l~~a~~~~is~~~g~~~~~~~  132 (303)
                      +..|+++++++|..++++...+...+|+.+++++|++++|+|+++.++.++ ...+..+++++..|.+++++|+||+|++
T Consensus       235 ~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~-~~~~~~~~~~a~~p~i~~~~g~~~~~~~  313 (460)
T 3mkt_A          235 KELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSL-VFMFPMSIGAAVSIRVGHKLGEQDTKGA  313 (460)
T ss_dssp             SSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHSSCCCTT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence            467999999999999999999999999999999999999999999999994 4789999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHhhHHHHHHcCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCchHHHHHH
Q 044433          133 GIICQRAMVLHLGAAVIPT-FLYWYSGPTLRAMGQSESIAEQGQIFARGLIPQIYAFALSCPMQRFRQAQNIVNPLASMA  211 (303)
Q Consensus       133 ~~~~~~~~~~~~~~~i~~~-~~~~~~~~il~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  211 (303)
                      ++..+++..+...++++++ +++.+++++..++.+|+++.+.+..++++++++.++.+++.+..+++++.||++.+++.+
T Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~  393 (460)
T 3mkt_A          314 AIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRT  393 (460)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence            9999999999999999998 558889999999988888889999999999999999999999999999999999999999


Q ss_pred             HHHH-HHHHHHHHHHHHh----cC-CCchhHHHHHHHHHHHHHHHHHHHHHhC
Q 044433          212 AGAF-LLHIVLTWIAVYV----LK-FGLMGIALTLSLSWWFLVIINALYIVLS  258 (303)
Q Consensus       212 ~~~~-~~~i~~~~~li~~----~~-~G~~Gaalat~~s~~~~~~~~~~~l~~~  258 (303)
                      +++. ++|+++++++.+.    .+ +|+.|+|+|+.+++.+..++..+.++|.
T Consensus       394 ~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~  446 (460)
T 3mkt_A          394 FISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL  446 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred             HHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9988 9999999999987    67 9999999999999999888776655543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00