Citrus Sinensis ID: 044435

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
Protein Sequence
MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSPFAESNRSLKKKKTRKRRKGKRN
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccHHHHHEEEcccccHHHHcccHHHHHHHHHccccccccEEEEEEEccccccccEEEEccccccccccccccccccccccccEEEEEEEccEEEEEEccccEEEEEcccccEEEccccccccccccccEEEEEEEcccccEEEEEEEEEcccccccEEEEEEcccccEEEEccccccccccccccccccEEEEcccEEEEEEEccccccccEEEEEEccccEEEEEcccccccccccccEEEEEEEccEEEEEEccccEEEEEEEEEccccccEEEEEEEcccccEEEEEEEEEEccEEEEEEcccEEEEEEccccEEEEEEEEccccEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHcccccEEEEEEEccccEEEEEEEcccccccccccccccccccccccEEEEEEEcccEEEEEEEccccEEEEccccccEEEEcccccccccccEEEEEEEEccccccEEEEEEEEcccccccEEEEEEEcccccEEEEEccccccccccccccccccEEEEcEEEEEEEcccccccccEEEEEEccccccccccccccccccccEEEEEEEEEccEEEEEEccccEEEEEEEEccccccccEEEEEEccccccccEEEEEEcccEEEEEcccEEEEEEccccccEEEEEEccccccEEcccccccccccccccccccccccccHcccc
Coil and Loop (DISEMBL)
MATWKLPLDVIIDILIRlpgksllrFRCISKSFRslidskdfiNLHLSrsiktssnrslvicsdldynlktrfhslsldslgggdddgsiIDLRVNEMFDIIIGSCNgllalknypkgiillnpltkkhrvlpkfyrdlhgdkpslhgfgydvgsddyklVRIHVFKSPVYHIEATVYGLKVNLWRRIKniknfpyswadhsyggngaFVNGALHWLANQNQDEMINDLILAFDLnietfysmpmpgfgneggggelSGVYVLKGCLSLLCkysepwdlwVMKEYGVKDSWSKLFTmnengyrviplafssrgdkvlfqknskdhcwyhldmhrvesflvkgpsdvhvCVDTLvspfaesnrslkkkktrkrrkgkrn
Flexible Loop (DISEMBL)
matwklplDVIIDILirlpgksllRFRCISKSfrslidskdfINLHLsrsiktssnrslVICSDLDYNLKTRFHslsldslgggdDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTlvspfaesnrslkkkktrkrrkgkrn
Low Complexity Region (SEG)
MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHslsldslgggdddgsiidlRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPgfgneggggelsgVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSPFAESNRSLkkkktrkrrkgkrN
Disordered region (IsUnstruct)
**TWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFH***************IIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSP**********************
Disordered Region (DISOPRED)
***WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVS***********************
Disordered Region (DISEMBL)
MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSPFAES******************
Disordered Region (DISPRO)
***WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSPFAESN*****************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVHVCVDTLVSPFAESNRSLKKKKTRKRRKGKRN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	378	2.2.26 [Sep-21-2011]
Q9SU30	413	F-box protein CPR30 OS=Ar	yes	no	0.965	0.883	0.307	3e-41
Q8GXC7	427	F-box/kelch-repeat protei	no	no	0.870	0.770	0.292	3e-31
Q9SUY0	402	F-box protein At4g22390 O	no	no	0.880	0.828	0.281	7e-26
Q9LIR8	364	F-box/kelch-repeat protei	no	no	0.891	0.925	0.306	2e-24
Q9SFC7	417	F-box protein At3g07870 O	no	no	0.698	0.633	0.273	4e-16
Q9LU24	360	Putative F-box protein At	no	no	0.751	0.788	0.247	4e-16
Q9LPW2	416	Putative F-box/kelch-repe	no	no	0.722	0.656	0.239	2e-15
Q9LMB0	350	Putative F-box protein At	no	no	0.682	0.737	0.297	2e-14
Q9ZPS1	334	Putative F-box protein At	no	no	0.685	0.775	0.268	8e-14
Q9C800	441	Putative F-box protein At	no	no	0.716	0.614	0.299	3e-13

>sp|Q9SU30|CPR30_ARATH F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2

 Score =  169 bits (428), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/403 (30%), Positives = 202/403 (50%), Gaps = 38/403 (9%)

Query: 1   MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLV 60
           MAT  +P+D++ DI +RLP K+L+R R +SK    LI+  DFI  HL R ++T  +  ++
Sbjct: 1   MAT--IPMDIVNDIFLRLPAKTLVRCRALSKPCYHLINDPDFIESHLHRVLQTGDHLMIL 58

Query: 61  ICSDLDYNLKTRFHSLSLDSLGGGDD-DGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGI 119
           +   L      R +S+ LDSL    D +  +      E+F    GS NGL+ L N P  +
Sbjct: 59  LRGAL------RLYSVDLDSLDSVSDVEHPMKRGGPTEVF----GSSNGLIGLSNSPTDL 108

Query: 120 ILLNPLTKKHRVLPKFYRDLHGDKPS----LHGFGYDVGSDDYKLVRIHVFK-------S 168
            + NP T++   LP    DL     +     +G GYD  SDDYK+VR+  FK        
Sbjct: 109 AVFNPSTRQIHRLPPSSIDLPDGSSTRGYVFYGLGYDSVSDDYKVVRMVQFKIDSEDELG 168

Query: 169 PVYHIEATVYGLKVNLWRRIKNIKN-----FPYSWADHSYGGNGAFVNGALHWLANQNQD 223
             +  E  V+ LK N W+RI+++ +     F + +      G G     +LHW+  +   
Sbjct: 169 CSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRRGYGVLAGNSLHWVLPRRPG 228

Query: 224 EMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPW-DLWVM 282
            +  +LI+ FDL +E F  +  P     G       + VL GCL L+C Y + + D+W+M
Sbjct: 229 LIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLDGCLCLMCNYDQSYVDVWMM 288

Query: 283 KEYGVKDSWSKLFTMN-----ENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES 337
           KEY V+DSW+K+FT+      ++   + PL +S    KVL + N+    W+ L+  ++ +
Sbjct: 289 KEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLLELNNTKLVWFDLESKKMST 348

Query: 338 FLVKG-PS--DVHVCVDTLVSPFAESNRSLKKKKTRKRRKGKR 377
             +K  PS     + V +LV        ++K +K ++ ++ + 
Sbjct: 349 LRIKDCPSSYSAELVVSSLVLGCKGDLNNIKYRKEQQAKEARE 391

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXC7|FBK50_ARATH F-box/kelch-repeat protein At3g06240 OS=Arabidopsis thaliana GN=At3g06240 PE=2 SV=1

 Score =  136 bits (342), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 119/407 (29%), Positives = 192/407 (47%), Gaps = 78/407 (19%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSL---VIC 62
           LP ++I +IL+RLP KS+ RFRC+SK F +L     F  +HL   ++  S RSL   +I 
Sbjct: 36  LPPEIITEILLRLPAKSIGRFRCVSKLFCTLSSDPGFAKIHLDLILRNESVRSLHRKLIV 95

Query: 63  SDLDYNLKTRFHSLSLDSLGGG-------------DDDGSIIDLRV-----NEMFD---- 100
           S   +NL    +SL  +S+G G              DD SI    +     + ++D    
Sbjct: 96  S--SHNL----YSLDFNSIGDGIRDLAAVEHNYPLKDDPSIFSEMIRNYVGDHLYDDRRV 149

Query: 101 --------------IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYR----DLHGD 142
                          I+GS NGL+ +      + L NP T   + LP+ +R    +   D
Sbjct: 150 MLKLNAKSYRRNWVEIVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERD 209

Query: 143 KPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHS 202
               +GFG+D  +DDYKLV++      +  ++A+VY LK + WRRI N+    Y   D S
Sbjct: 210 NFQTYGFGFDGLTDDYKLVKLVATSEDI--LDASVYSLKADSWRRICNLN---YEHNDGS 264

Query: 203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGG-------G 255
           Y  +G   NGA+HW+  +++      +++AFD+  E F  MP+P    +          G
Sbjct: 265 Y-TSGVHFNGAIHWVFTESRHNQ--RVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVG 321

Query: 256 ELSG-VYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD 314
            L+G + V+  C      Y    D+WVM EYG   SWS++  +N     + PL  +   +
Sbjct: 322 SLNGRLCVVNSC------YDVHDDIWVMSEYGEAKSWSRI-RINLLYRSMKPLCSTKNDE 374

Query: 315 KVLFQKNSKDHCWYHLDMHRVESFLVKGPS-----DVHVCVDTLVSP 356
           +VL + +  D   Y+ + +   +  + G       + +  V++L+SP
Sbjct: 375 EVLLELDG-DLVLYNFETNASSNLGICGVKLSDGFEANTYVESLISP 420

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUY0|FB244_ARATH F-box protein At4g22390 OS=Arabidopsis thaliana GN=At4g22390 PE=2 SV=3

 Score =  118 bits (296), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/377 (28%), Positives = 172/377 (45%), Gaps = 44/377 (11%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
           + P D+I ++ +RL   +L++ R +SK   SLIDS +F++ HL R ++T  +  +++   
Sbjct: 3   ECPTDLINEMFLRLRATTLVKCRVLSKPCFSLIDSPEFVSSHLRRRLETGEHLMILL--- 59

Query: 65  LDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNP 124
                     ++ LDS     D    +       F  + GS NG++ L N P  + + NP
Sbjct: 60  ---RGPRLLRTVELDSPENVSDIPHPLQ---AGGFTEVFGSFNGVIGLCNSPVDLAIFNP 113

Query: 125 LTKKHRVLPKFYRDLHGDKPS----LHGFGYDVGSDDYKLVRI---------HVFKSPVY 171
            T+K   LP    D      +     +G GYD   DD+K+VRI           F  PV 
Sbjct: 114 STRKIHRLPIEPIDFPERDITREYVFYGLGYDSVGDDFKVVRIVQCKLKEGKKKFPCPV- 172

Query: 172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSY-----GGNGAFVNGALHWLANQNQDEMI 226
             E  V+ LK N W+R+  +  F   W  + Y      G G  VN  LHW+  + Q  + 
Sbjct: 173 --EVKVFSLKKNSWKRVCLMFEFQILWISYYYHLLPRRGYGVVVNNHLHWILPRRQGVIA 230

Query: 227 NDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLC--KYSEPWDLWVMKE 284
            + I+ +DL  +    +  P    E    +   + VL GC+ L+C  +YS   D+WV+KE
Sbjct: 231 FNAIIKYDLASDDIGVLSFP---QELYIEDNMDIGVLDGCVCLMCYDEYSH-VDVWVLKE 286

Query: 285 YGVKDSWSKLFTMN-----ENGYRVIPLAFSSRGDKVLFQ-KNSKDHCWYHLDMHRVESF 338
           Y    SW+KL+ +      E+   + PL  S    K+L +  N+ +  W+ L+   + + 
Sbjct: 287 YEDYKSWTKLYRVPKPESVESVEFIRPLICSKDRSKILLEINNAANLMWFDLESQSLTTA 346

Query: 339 LVKGPSDVHVCVDTLVS 355
            ++   D     D LVS
Sbjct: 347 GIE--CDSSFTADILVS 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LIR8|FBK67_ARATH F-box/kelch-repeat protein At3g23880 OS=Arabidopsis thaliana GN=At3g23880 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 111/362 (30%), Positives = 176/362 (48%), Gaps = 25/362 (6%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLH---LSRSIKTSSNRSLV-I 61
           LPL+++ +IL+RLP KSL RF+C+  S+RSLI    F   H   L  S  T+S +S   +
Sbjct: 14  LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query: 62  CSDLDYNLKT-RFHSL-SLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALK-NYPKG 118
            +   Y+LK+   HSL +  ++   + DG ++       +  ++G+C+GL+    +Y K 
Sbjct: 74  ITTSRYHLKSCCIHSLYNASTVYVSEHDGELL----GRDYYQVVGTCHGLVCFHVDYDKS 129

Query: 119 IILLNPLTKKHRVLPKFYRDLHGDKPSL-HGFGYDVGSDDYKLVRIHVFKSPVYHIEATV 177
           + L NP  K  + L     +   D+  + +GFGYD   DDYK+V +   +  V  IE  +
Sbjct: 130 LYLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQV-KIETKI 188

Query: 178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI 237
           Y  +  LWR   +  +FP          +G ++NG L+           +  I+++D++ 
Sbjct: 189 YSTRQKLWR---SNTSFPSGVVVADKSRSGIYINGTLN---WAATSSSSSWTIISYDMSR 242

Query: 238 ETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP-WDLWVMKEYGVKDSWSKLFT 296
           + F  +P P     G      G   L+GCLS++C       D+WVMKE+G   SWSKL +
Sbjct: 243 DEFKELPGPVCCGRGCFTMTLG--DLRGCLSMVCYCKGANADVWVMKEFGEVYSWSKLLS 300

Query: 297 MNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD--MHRVESFLVKGPSDVHVCVDTLV 354
           +      V PL  S  G  VL +  S    +   +   H   S  + G  D  V + T+V
Sbjct: 301 IPGLTDFVRPLWISD-GLVVLLEFRSGLALYNCSNGRFHYPVSNSISGCRDAKVYLKTMV 359

Query: 355 SP 356
           SP
Sbjct: 360 SP 361

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SFC7|FB135_ARATH F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 149/329 (45%), Gaps = 65/329 (19%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLID------------SKDFINLHLSRSIKT 53
           LP D+I DI  RLP  S+ R   + +S+RS++             +K  + LH    I+ 
Sbjct: 28  LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHGRLSSSSSSPTKPCLLLHCDSPIRN 87

Query: 54  SSNRSLVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALK 113
             +   +  S+ +  +KT+  +L   S        S+ +      FD++ GSCNGLL L 
Sbjct: 88  GLH--FLDLSEEEKRIKTKKFTLRFAS--------SMPE------FDVV-GSCNGLLCLS 130

Query: 114 N--YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSP-- 169
           +  Y   + L NP T     LP+     H D+  + GFG+   + +YK+++I  F+    
Sbjct: 131 DSLYNDSLYLYNPFTTNSLELPECSNKYH-DQELVFGFGFHEMTKEYKVLKIVYFRGSSS 189

Query: 170 -----------VYHIEATVYGLKVNL--------WRRIKNIKNFPYSWADHSYGGNGAFV 210
                      + + ++ V  L ++         WR   ++   PY +   S   + A V
Sbjct: 190 NNNGIYRGRGRIQYKQSEVQILTLSSKTTDQSLSWR---SLGKAPYKFVKRS---SEALV 243

Query: 211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLL 270
           NG LH++    +  + +   ++FDL  E F  +P P  G  G       +  LKGCL  +
Sbjct: 244 NGRLHFVTRPRR-HVPDRKFVSFDLEDEEFKEIPKPDCG--GLNRTNHRLVNLKGCLCAV 300

Query: 271 C--KYSEPWDLWVMKEYGVKDSWSKLFTM 297
               Y +  D+WVMK YGVK+SW K +++
Sbjct: 301 VYGNYGK-LDIWVMKTYGVKESWGKEYSI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LU24|FB145_ARATH Putative F-box protein At3g16210 OS=Arabidopsis thaliana GN=At3g16210 PE=4 SV=1

 Score = 85.9 bits (211), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 157/339 (46%), Gaps = 55/339 (16%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LP ++ I+IL+RL  K L RFRC+ K++R LI+   F     + + +  S    V   D 
Sbjct: 5   LPEELAIEILVRLSMKDLARFRCVCKTWRDLINDPGF-----TETYRDMSPAKFVSFYDK 59

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNE-MFD--IIIGSCNGLLALKNYPKGIILL 122
           ++ +        LD  G      + +D  +++ M D    +  C+G L +      +++ 
Sbjct: 60  NFYM--------LDVEGKHPVITNKLDFPLDQSMIDESTCVLHCDGTLCVTLKNHTLMVW 111

Query: 123 NPLTKKHRVLPK--FYRDLHGDKPSLHGFGYDVGSDDYKLV----RIHVFKSPVYHIEAT 176
           NP +K+ +++P    Y+D      ++ GFGYD   DDYK+V    R+ V  + V+     
Sbjct: 112 NPFSKQFKIVPNPGIYQD-----SNILGFGYDPVHDDYKVVTFIDRLDVSTAHVFEFRTG 166

Query: 177 VYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLN 236
            +G  + +        ++P  W  H     G F++  L+W+A ++     +  IL F+L+
Sbjct: 167 SWGESLRI--------SYP-DW--HYRDRRGTFLDQYLYWIAYRSS---ADRFILCFNLS 212

Query: 237 IETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFT 296
              +  +P+P + N+G      GV   K C++      +   + VM++ G   SWSK+ +
Sbjct: 213 THEYRKLPLPVY-NQGVTSSWLGVTSQKLCITEYEMCKKEIRISVMEKTG---SWSKIIS 268

Query: 297 MNENG----------YRVIPLAFSSRGDKVLFQKNSKDH 325
           ++ +           Y+V  ++F+ + D V+      DH
Sbjct: 269 LSMSSFISVQDRIYDYQVEFVSFTRKNDLVVTFTGYNDH 307

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPW2|FBK2_ARATH Putative F-box/kelch-repeat protein At1g12870 OS=Arabidopsis thaliana GN=At1g12870 PE=4 SV=2

 Score = 83.6 bits (205), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 78/326 (23%), Positives = 146/326 (44%), Gaps = 53/326 (16%)

Query: 1   MATWKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSN--RS 58
           +A+  LP DV+ +I ++LP K+L+RF+ +SK +RS ++S  F   HL  + ++  +  + 
Sbjct: 28  IASSSLPDDVVEEIFLKLPVKALMRFKSLSKQWRSTLESCYFSQRHLKIAERSHVDHPKV 87

Query: 59  LVICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIG---------SCNGL 109
           ++I    + +++  F ++SL+S          +    + +F+   G         SC+G+
Sbjct: 88  MIITEKWNPDIEISFRTISLES----------VSFLSSALFNFPRGFHHPIYASESCDGI 137

Query: 110 LALKNYPKG--IILLNPLTKKHRVLP--KFYRDLHGDKPSLHGFG--------YDVGSDD 157
             + + PK   I ++NP T+  R LP  +F   +H   P+L              V + D
Sbjct: 138 FCIHS-PKTQDIYVVNPATRWFRQLPPARFQIFMHKLNPTLDTLRDMIPVNHLAFVKATD 196

Query: 158 YKLVRIHVFKSPVYHI-EATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHW 216
           YKLV +  + S    + +  V+  K N WR +  I ++        +    A  NG L+W
Sbjct: 197 YKLVWL--YNSDASRVTKCEVFDFKANAWRYLTCIPSYRI-----YHDQKPASANGTLYW 249

Query: 217 LANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP 276
                  E+    ++A D++ E F  +P P          +    +       LC Y   
Sbjct: 250 FTETYNAEI---KVIALDIHTEIFRLLPKPSLIASSEPSHIDMCIIDNS----LCMYETE 302

Query: 277 WDLWVMKEY----GVKDSWSKLFTMN 298
            D  +++E       +D+W K++T+N
Sbjct: 303 GDKKIIQEIWRLKSSEDAWEKIYTIN 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LMB0|FB10_ARATH Putative F-box protein At1g19160 OS=Arabidopsis thaliana GN=At1g19160 PE=4 SV=1

 Score = 80.5 bits (197), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 89/299 (29%), Positives = 140/299 (46%), Gaps = 41/299 (13%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           +P D +++IL+RLP KSL RF C+SK   S+I S+ FINL+ SR+  T  +R +    D 
Sbjct: 2   IPEDPLVEILLRLPVKSLARFLCVSKRCYSIIRSRHFINLYQSRA-STRESRVMFAFRDT 60

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPL 125
           +   +  F SLS       + D +   + V           NGL+ +++  + + + NP+
Sbjct: 61  NTFFRWNFFSLSQPPSSVTNIDSTSYCMPV---------CVNGLICVEHMFR-LWICNPV 110

Query: 126 TKKHRVLPKFYRDLHGDKPSLHGF--GYDVGSDDYK---LVRIHVFKSPVYHIEATVYGL 180
           TKK  + P       G +     +  GYD  +  YK   L R H+     Y +E   +G 
Sbjct: 111 TKKITLFPD-----CGPRKQFTTWYMGYDPINYQYKVLYLSREHLIAP--YIVEVFTFGD 163

Query: 181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF 240
           + + WR I+  +NF      HS    G   +G L++ A           I+ FD+  E F
Sbjct: 164 EGS-WRMIEADENF------HSPETRGVCTHGVLYYGAYTGDGAK----IVRFDVRTEKF 212

Query: 241 YS-MPMPGFGNEGGGGELSGVYVL---KGCLSLLC-KYSEPWDLWVMKEYGVKDSWSKL 294
              + MP       G  L G+Y L   +G L LL  + +  +DLWV+++   K  WSK+
Sbjct: 213 GKFIEMPAEACSIHGVYL-GLYTLLDYQGKLGLLATQATSTYDLWVLED-AEKHEWSKV 269

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPS1|FB94_ARATH Putative F-box protein At2g02030 OS=Arabidopsis thaliana GN=At2g02030 PE=4 SV=1

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 125/298 (41%), Gaps = 39/298 (13%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD- 64
           +P +++ +IL+RLP KSL RF+ +SK +R+LI SK F   H++   K+   + L +C D 
Sbjct: 39  IPNEIVEEILVRLPVKSLTRFQTVSKHWRTLITSKYFGKRHMALE-KSKGCKLLFVCDDF 97

Query: 65  LDYNLKTRF-HSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLN 123
           +D    T F  +++L+     + D    +    + F  I  SC+GL+   +  + + ++N
Sbjct: 98  VDRAEDTLFLKTVALEKTSVSEGDEQAFEFEGYKGFLDISESCDGLVCFYDTTRAVEVMN 157

Query: 124 PLTKKHRVLP-KFYRDLHGDKP----------------------SLHGFGYDVGSDDYKL 160
           P T     LP    + L   KP                      S  G G D  S  YKL
Sbjct: 158 PATTMFIELPLSRIQQLCIYKPNPEVELEPVQDPNPVLDPVMTCSQIGVGKDSVSGSYKL 217

Query: 161 VRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSY---GGNGAFVNGALHWL 217
           V ++   SP       V  L    WR +        +  DH          F NG+L+WL
Sbjct: 218 VWMY-NTSPATPPTCEVLDLDGKKWRFVNT------TSLDHHQILCDQRPVFANGSLYWL 270

Query: 218 ANQNQDEMINDL-ILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG--CLSLLCK 272
               +        ++  DL+ E F  +  P F      G+  G+  L G  C+S L K
Sbjct: 271 TGDEEGYATTQTKLIVLDLHTEMFQVIQTPPFITRDASGDKIGLCNLDGRLCISELKK 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C800|FB34_ARATH Putative F-box protein At1g33530 OS=Arabidopsis thaliana GN=At1g33530 PE=4 SV=1

 Score = 76.6 bits (187), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 97/324 (29%), Positives = 146/324 (45%), Gaps = 53/324 (16%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLS--------RSIKTSSN 56
           +LP  ++ +IL RLP K L+R + ISK ++SLI+S      HL         + IK +  
Sbjct: 96  ELPDVLVEEILQRLPVKYLVRLKSISKGWKSLIESDHLAEKHLRLLEKKYGLKEIKITVE 155

Query: 57  RSL--VICSDLDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKN 114
           RS    IC    ++ ++  ++++ DS     DD     LRV        GSCNGL+ +  
Sbjct: 156 RSTSKSICIKF-FSRRSGMNAINSDS-----DDL----LRVP-------GSCNGLVCVYE 198

Query: 115 YPKG-IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHI 173
                I LLNP+T   R L        G K S+ GFG DV +  YK++ ++ F      +
Sbjct: 199 LDSVYIYLLNPMTGVTRTL----TPPRGTKLSV-GFGIDVVTGTYKVMVLYGFD----RV 249

Query: 174 EATVYGLKVNLWR-RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILA 232
              V+ L  N WR R K     P S    +   N  FVNG+L WL   +  E     IL 
Sbjct: 250 GTVVFDLDTNKWRQRYKTAGPMPLSCIP-TPERNPVFVNGSLFWLLASDFSE-----ILV 303

Query: 233 FDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLS-LLCKYSEPWDL----WVMKEYGV 287
            DL+ E F ++  P   N+    ++S  Y+    L   LC  +    L    WV+ +  +
Sbjct: 304 MDLHTEKFRTLSQP---NDMDDVDVSSGYIYMWSLEDRLCVSNVRQGLHSYVWVLVQDEL 360

Query: 288 KDSWSKLFTMNENGYRVIPLAFSS 311
            + W +    N  G+   PL+ +S
Sbjct: 361 SEKWERT-RFNLLGHVFPPLSLNS 383

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
255583943	389	ubiquitin-protein ligase, putative [Rici	0.920	0.894	0.390	5e-54
356532341	392	PREDICTED: F-box protein CPR30-like [Gly	0.931	0.897	0.362	1e-51
357480485	392	F-box family protein [Medicago truncatul	0.933	0.900	0.344	9e-48
224089629	396	f-box family protein [Populus trichocarp	0.902	0.861	0.356	1e-47
357448237	418	F-box protein [Medicago truncatula] gi|3	0.933	0.844	0.350	4e-46
356555728	394	PREDICTED: F-box protein CPR30-like [Gly	0.933	0.895	0.348	7e-46
357448235	704	F-box protein [Medicago truncatula] gi|3	0.949	0.509	0.360	1e-45
357448241	439	F-box protein [Medicago truncatula] gi|3	0.939	0.808	0.363	2e-45
357473337	403	F-box protein [Medicago truncatula] gi|3	0.931	0.873	0.354	4e-45
224053103	408	predicted protein [Populus trichocarpa]	0.952	0.882	0.344	6e-45

>gi|255583943|ref|XP_002532719.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223527546|gb|EEF29668.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  218 bits (554), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 154/394 (39%), Positives = 216/394 (54%), Gaps = 46/394 (11%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LPL++I +IL RL  K LL  RC+SK +R+LIDS  FI LHL+ SI++  N S+++ S  
Sbjct: 4   LPLEMIAEILCRLTAKKLLCCRCVSKRWRTLIDSPTFIYLHLNHSIESPCNLSIILKS-- 61

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIID--LRVNEMFDIIIGSCNGLLALKNYPKGIILLN 123
                +  +SLS D L    D+   +D  L        I+GSCNGLL + N    I L N
Sbjct: 62  -----SELYSLSFDLL----DNIQPLDHPLMCYNHGVKILGSCNGLLCICNIVDDIALWN 112

Query: 124 PLTKKHRVLP------KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF---KSPVYHIE 174
           P  + HRV+P      K Y  +   + S+ GFGYD+ +DDYKLVRI  F       +  E
Sbjct: 113 PSIRAHRVVPYLPVELKRYFGMCSCRVSVFGFGYDLSNDDYKLVRIAQFGGVDRKSFESE 172

Query: 175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFD 234
             V+ L+ N WRRI ++   PY       G NG + NGALHWL +Q+ D  + D I+A D
Sbjct: 173 VKVFSLRKNSWRRIADM---PYCVL--YPGENGIYANGALHWLVSQDPDSTVADTIVALD 227

Query: 235 LNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLC-KYSEPWDLWVMKEYGVKDSWSK 293
           L +E ++ +P P F +        GV VL+GCLSLL    SE  D+WVM+EY VK+SWSK
Sbjct: 228 LGVEDYHVVPKPEFVDMNCN---MGVGVLQGCLSLLAYARSERVDVWVMEEYMVKESWSK 284

Query: 294 LFTMNENGYRVI-------PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPS-- 344
           LF++      VI       PLA+S  G++VL + ++ +  WY L    V +  ++G    
Sbjct: 285 LFSVAR--LEVIGILRSLKPLAYSKSGNEVLIEHDNVNLFWYDLKRKEVVNVWIQGVPIT 342

Query: 345 -DVHVCVDTLVSPFAESNRSLKK---KKTRKRRK 374
            +  +CV +LV   A   R   K   K+T+ R+K
Sbjct: 343 FEAEICVGSLVPLNANRLRRRPKHEHKETKNRKK 376

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532341|ref|XP_003534732.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  209 bits (533), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 142/392 (36%), Positives = 211/392 (53%), Gaps = 40/392 (10%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LP +V+ DIL RLP KSLLRFR  SKS++SLIDS+ F ++HLSRS+  +SN +L++  D 
Sbjct: 5   LPREVVTDILSRLPAKSLLRFRSTSKSWKSLIDSQHFNSVHLSRSLSLTSNTTLILRLDS 64

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIID--LRVNEMFDIIIGSCNGLLALKNYPKGIILLN 123
           D   +T F +L         D    ++  L        ++GSCNGLL + N    I   N
Sbjct: 65  DL-YQTNFPTL---------DPPLFLNHPLMCYSNNITLLGSCNGLLCISNVADDIAFWN 114

Query: 124 PLTKKHRVLPKF---YRDLHGD----KPSLHGFGYDVGSDDYKLVRIHVF---KSPVYHI 173
           P  ++HR+LP      R LH D       ++GFG+D  S DYKLVRI  F   +   +  
Sbjct: 115 PSLRQHRILPSLPLPRRRLHPDTTLFAARVYGFGFDHTSPDYKLVRISYFVDLQDRSFDS 174

Query: 174 EATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAF 233
           +  +Y L+ N W   K + + PY+         G FV  +LHW+  +  +    DLI+AF
Sbjct: 175 QVKLYTLRANAW---KTLPSMPYALC--CARTMGVFVGNSLHWVVTRKLEPDQPDLIVAF 229

Query: 234 DLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKY-SEPWDLWVMKEYGVKDSWS 292
           DL  E F  +P+P  G  GGG E+  V +L   L +   + +   D+WVM+EY   DSW 
Sbjct: 230 DLTHEIFTELPLPDTGGVGGGFEID-VALLGDSLCMTVNFHNSKMDVWVMREYNRGDSWC 288

Query: 293 KLFTMNEN----GYRVI-PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVH 347
           KLFT+ E+     ++ + PL +SS G+KVL + + K  CWY L    V    ++G  +++
Sbjct: 289 KLFTLEESRELRSFKCLRPLGYSSDGNKVLLEHDRKRLCWYDLGKKEVTLVRIQGLPNLN 348

Query: 348 ---VCVDTLVSPFAESNRSLKKKKT---RKRR 373
              +C+ TLV+P+    +  +K  T   ++RR
Sbjct: 349 EAMICLGTLVTPYFLPRQICRKSPTLGCQRRR 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357480485|ref|XP_003610528.1| F-box family protein [Medicago truncatula] gi|355511583|gb|AES92725.1| F-box family protein [Medicago truncatula]

 Score =  197 bits (500), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 137/398 (34%), Positives = 210/398 (52%), Gaps = 45/398 (11%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LP +V  +IL R+P K LLR R   K +R+LIDS DFI LHLS+     S  S++I    
Sbjct: 4   LPTEVTTEILSRVPAKPLLRLRSTCKWWRNLIDSTDFIFLHLSK-----SRDSVIILRQ- 57

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPL 125
                +R + L L+S+    +    +    N +   ++GSCNGLL + N    I   NP 
Sbjct: 58  ----HSRLYELDLNSMDRVKELDHPLMCYSNRI--KVLGSCNGLLCICNIADDIAFWNPT 111

Query: 126 TKKHRVLPK--FYRDLHGDKPSL--------HGFGYDVGSDDYKLVRIHVF---KSPVYH 172
            +KHR++P     R    +  ++        +GFGYD  +DDYKLV I  F    +  + 
Sbjct: 112 IRKHRIIPSEPLIRKETNENNTITTLLAAHVYGFGYDSATDDYKLVSISYFVDLHNRSFD 171

Query: 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILA 232
               +Y ++ ++W   K + + PY+         G FV+GALHW+  ++ +    DLI+A
Sbjct: 172 SHVKIYTMRTDVW---KTLPSMPYALC--CARTMGVFVSGALHWVVTRDLEPESRDLIVA 226

Query: 233 FDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLL-CKYSEPWDLWVMKEYGVKDSW 291
           FDL  E F  + +PG  +   G     V +L+G L ++  + S+ +D+WVM+EYG  DSW
Sbjct: 227 FDLRFEVFREVALPGTVD---GKFDMDVALLRGMLCIIENRGSDGFDVWVMREYGSHDSW 283

Query: 292 SKLFTMNENG-----YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKG-PSD 345
            K+FT+ +         + PL +S  GDKVLF+++SK  CWY+L    V    + G P+ 
Sbjct: 284 CKMFTVGQPRDVKLMKSLKPLGYSRNGDKVLFEQDSKKLCWYNLASKDVSWVRISGIPNS 343

Query: 346 VH--VCVDTLVSPFAESNRSLKKKKTR---KRRKGKRN 378
           +   VCV +LV P    NRS++ KK +   ++ K KR+
Sbjct: 344 IEGTVCVGSLVKPSLMMNRSVQSKKQKLVEEKNKKKRD 381

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089629|ref|XP_002308787.1| f-box family protein [Populus trichocarpa] gi|222854763|gb|EEE92310.1| f-box family protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 203/382 (53%), Gaps = 41/382 (10%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LPL++I +IL RLP K LL  R +SK + +LID  +F+ LHL  S+ TSSN  +++    
Sbjct: 4   LPLEMIAEILCRLPAKELLCCRSVSKPWCALIDGPNFVKLHLKHSMDTSSNLYIIL---- 59

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMF----DIIIGSCNGLLALKNYPKGIIL 121
                +  H +  +     +D  ++ +L    M       ++GS NGLL + N    I +
Sbjct: 60  --RTTSHVHYMDFEQNLVLNDCVTLKELNHPLMCYNHGIKVLGSVNGLLCISNVVDDIAV 117

Query: 122 LNPLTKKHRVLP------KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS---PVYH 172
            NP T+KHRV+P      K Y         + GFGYD   DDYKLVRI  F       + 
Sbjct: 118 WNPSTRKHRVVPFLPIELKRYFGTKSCSVYVFGFGYDSVRDDYKLVRIAQFGGGGKRSFE 177

Query: 173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILA 232
            E  VY L+   WRRI ++   PY    H  G NG F NGALHW+  +N +  + ++++A
Sbjct: 178 SEVKVYSLRKQSWRRIGDM---PY--CVHYPGANGVFANGALHWVVGENPESNVANIVVA 232

Query: 233 FDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKY-SEPWDLWVMKEYGVKDSW 291
            DL +E +  +  P + ++    +L    VL+GCL  L  +  E  D+W+MKEYGVK+SW
Sbjct: 233 LDLGVEDYREVLQPEYKDKNFYIDLG---VLRGCLCFLANFLGERVDVWMMKEYGVKESW 289

Query: 292 SKLFTMNENGYRVI-------PLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPS 344
           +KLF++ +  Y VI       PLA+S  GD+VL + ++ D CWY L   +V++ +   P 
Sbjct: 290 TKLFSVAQ--YEVIGFLRSLKPLAYSKSGDEVLIEHDNLDLCWYDLKRKQVKNRIPGIPY 347

Query: 345 --DVHVCVDTLVSPFAESNRSL 364
             +    V++L+S     NR L
Sbjct: 348 SFEADTFVESLIS--VSPNRHL 367

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448237|ref|XP_003594394.1| F-box protein [Medicago truncatula] gi|355483442|gb|AES64645.1| F-box protein [Medicago truncatula]

 Score =  191 bits (486), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 147/419 (35%), Positives = 211/419 (50%), Gaps = 66/419 (15%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
           +LP +++ +IL RLP  SLLRFR  SKSF+SLIDS  FINLHL    + S N+SL++   
Sbjct: 4   ELPPEILTEILSRLPVISLLRFRSTSKSFKSLIDSNKFINLHL----RNSPNQSLIL--- 56

Query: 65  LDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFD---------------IIIGSCNGL 109
                K   + + +D     D D S++    N  F                 +IGSCNGL
Sbjct: 57  ---RFKFDIYQIKIDD-DFSDPDTSMLLFPHNHPFTGNSTNIDPFKGNNTITLIGSCNGL 112

Query: 110 LALK---------NYPKGIILLNPLTKKHRVLP----KFYRDLHGDKPS-----LHGFGY 151
           LA+          N P  I + NP T+KHR++P         L  D P+     +HGFG+
Sbjct: 113 LAMSHGVIAFTHPNAPNEITIWNPNTRKHRIIPFLPLPIPNILQSDNPNRGCLCVHGFGF 172

Query: 152 DVGSDDYKLVRIHV---FKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGA 208
           D  S DYKL+RI      ++P Y     ++ LK N W   K I N PYS   +     G 
Sbjct: 173 DSVSGDYKLLRISNLLDLQNPFYDPHVRLFSLKTNSW---KVIPNLPYSL--YYALTMGV 227

Query: 209 FV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV--LK 264
           FV  + +LHW+A +       DLILAF+L +ETF  +P+P    E    +   + V  L 
Sbjct: 228 FVENSSSLHWVATRKVQLFQPDLILAFNLTLETFNEVPLPDEIEEEVNSKSFKIRVAALG 287

Query: 265 GCLSLLCKYSEP-WDLWVMKEYGVKDSWSKLFTMNENGYRVIP------LAFSSRGDKVL 317
           GCL ++  Y +   D+WVMKEYG ++SW KLFT+ ++ +  +P      L +SS   KVL
Sbjct: 288 GCLCMIVDYKDTKIDVWVMKEYGCRESWCKLFTVVKSSFD-LPLQSLRLLGYSSDRKKVL 346

Query: 318 FQKNSKDHCWYHLDMHRVESFL-VKGPSDVHVCVDTLVSP-FAESNRSLKKKKTRKRRK 374
            + + ++  WY L+  +V     +    D  +CV +LV P F   NR  ++  T +  K
Sbjct: 347 LRVDVENLFWYDLESKQVSYVQEILNLDDTMICVGSLVPPYFPVDNRRKQENPTSESEK 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555728|ref|XP_003546182.1| PREDICTED: F-box protein CPR30-like [Glycine max]

 Score =  191 bits (484), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/393 (34%), Positives = 204/393 (51%), Gaps = 40/393 (10%)

Query: 6   LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
           LP +V+ +IL RLP +SLLRFR  SKS++SLIDS+    LHL+RS+  +SN SL++  D 
Sbjct: 5   LPREVLTEILSRLPVRSLLRFRSTSKSWKSLIDSQHLNWLHLTRSLTLTSNTSLILRVDS 64

Query: 66  DYNLKTRFHSLSLDSLGGGDDDGSI-IDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNP 124
           D   +T F +L        D   S+   L        ++GSCNGLL + N    I   NP
Sbjct: 65  DL-YQTNFPTL--------DPPVSLNHPLMCYSNSITLLGSCNGLLCISNVADDIAFWNP 115

Query: 125 LTKKHRVLP--KFYRDLHGD----KPSLHGFGYDVGSDDYKLVRIHVF---KSPVYHIEA 175
             ++HR+LP     R  H D       + GFG+D  + DYKLVRI  F       +  + 
Sbjct: 116 SLRQHRILPYLPVPRRRHPDTTLFAARVCGFGFDHKTRDYKLVRISYFVDLHDRSFDSQV 175

Query: 176 TVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDL 235
            +Y L+ N W   K + + PY+         G FV  +LHW+  +  +    DLI+AFDL
Sbjct: 176 KLYTLRANAW---KTLPSLPYALC--CARTMGVFVGNSLHWVVTRKLEPDQPDLIIAFDL 230

Query: 236 NIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP-WDLWVMKEYGVKDSWSKL 294
             + F  +P+P  G   GG E+  + +L G L +   + +   D+WVM+EY  +DSW K+
Sbjct: 231 THDIFRELPLPDTGGVDGGFEID-LALLGGSLCMTVNFHKTRIDVWVMREYNRRDSWCKV 289

Query: 295 FTMNENGYR-----VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKGPSDVH-- 347
           FT+ E+        V PL +SS G+KVL + + K   WY L+   V    ++G  +++  
Sbjct: 290 FTLEESREMRSLKCVRPLGYSSDGNKVLLEHDRKRLFWYDLEKKEVALVKIQGLPNLNEA 349

Query: 348 -VCVDTLVSPF------AESNRSLKKKKTRKRR 373
            +C+ TLV P+          R+L  ++ RK R
Sbjct: 350 MICLGTLVPPYFLPRQICRKPRALGCERPRKTR 382

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448235|ref|XP_003594393.1| F-box protein [Medicago truncatula] gi|355483441|gb|AES64644.1| F-box protein [Medicago truncatula]

 Score =  189 bits (481), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 149/413 (36%), Positives = 212/413 (51%), Gaps = 54/413 (13%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
           +LP D++ +I  RLP KSLLRFR  SKS +SLIDS  FINLHL    K S N +L++  +
Sbjct: 4   ELPPDILAEIFSRLPVKSLLRFRSTSKSLKSLIDSLKFINLHL----KNSLNFNLILRHN 59

Query: 65  LDYNLKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDI-------IIGSCNGLLALK---- 113
                +  F +L+   +       + ID       D+       +IGSCNGLLA+     
Sbjct: 60  TTDFYQLHFPNLTKSIIPLNYPFTTNIDPSTRSPTDLLRNSKMSLIGSCNGLLAISTGVI 119

Query: 114 -----NYPKGIILLNPLTKKHRVLPKFYRDL----HGDKPSL--HGFGYDVGSDDYKLVR 162
                N    I + NP T+KH ++P     +    + DK SL  HGFG+D  S DYKL+R
Sbjct: 120 VFTHPNNLNEITIWNPNTRKHHIIPFLPLPIPILNYDDKCSLCVHGFGFDQISGDYKLLR 179

Query: 163 I-HV--FKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLAN 219
           I H+   ++P Y  +  ++ LK N W   K I   PY    H Y   G FV  ++HW+  
Sbjct: 180 ISHLLDLQNPFYDPQVRLFSLKTNSW---KIIPAMPYD-LQHLYDL-GVFVENSIHWIMT 234

Query: 220 QNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY--VLKGCLSLLCKYSEP- 276
           +  D +   LI+AF+L +E F  +P+P    E   GE   V+  VL GCL +   Y +  
Sbjct: 235 KKLDGLHPSLIVAFNLTLEIFNEVPLPDEIGEEVNGESFEVHVAVLGGCLCITVDYKDTK 294

Query: 277 WDLWVMKEYGVKDSWSKLFTMNENGYRVI-----PLAFSSRGDKVLFQK-------NSKD 324
            D+WVMKEYG +DSW KLFTM E+ + +      P+ +SS G KVL ++         + 
Sbjct: 295 IDVWVMKEYGCRDSWCKLFTMAESCFDLPLKLLRPICYSSDGSKVLLERAHVLLEVQHRK 354

Query: 325 HCWYHLDMHRVESFLVKGPSDVH---VCVDTLVSP-FAESNRSLKKKKTRKRR 373
             WY L   ++ S++   P +++    CV +LV P F   NR  K+    KRR
Sbjct: 355 LFWYDLKSEQI-SYVEGIPPNMNETMFCVGSLVPPSFPVDNRRKKENHPSKRR 406

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448241|ref|XP_003594396.1| F-box protein [Medicago truncatula] gi|355483444|gb|AES64647.1| F-box protein [Medicago truncatula]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 153/421 (36%), Positives = 206/421 (48%), Gaps = 66/421 (15%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
           +LP D++ ++  RLP KSLLRFR  SKSF+SLIDS  FINLHL  S+    NRSL++   
Sbjct: 4   ELPPDILAEVFSRLPVKSLLRFRSTSKSFKSLIDSHKFINLHLQNSL----NRSLILQRK 59

Query: 65  LD-YNLKTRFHS-------LSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKN-- 114
            D Y L+            + L+      +  +I    VN      IGSCNGLLA+ N  
Sbjct: 60  FDLYQLQIDDDDDDFSKSRIPLNHPFTAGNTSNIDPFEVNNTM-TRIGSCNGLLAICNGK 118

Query: 115 -------YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSL------HGFGYDVGSDDYKLV 161
                   P  I   NP T+KHRV+P     +    P++      HGFG+D  S D+KL+
Sbjct: 119 FAFINPCDPNEITFWNPNTRKHRVIPFLPLPIPILDPTIRASLCVHGFGFDSLSGDHKLL 178

Query: 162 RIHVF---KSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVN--GALHW 216
           RI      +S  Y     ++  K N W   K I   PY      Y   G FV+   ++HW
Sbjct: 179 RISYLIDHQSTFYDPHVRLFSSKANSW---KIIPTMPYVL--QYYHTMGVFVDNSSSIHW 233

Query: 217 LANQNQDEMINDLILAFDLNIETFYSMPMPG-FGNEGGGGELS-GVYVLKGCLSLLCKY- 273
           +A +      +DLILAF+L++ETF  +P+P   G E         V VL GCL +   Y 
Sbjct: 234 VATRKNQSFQSDLILAFNLSLETFNEVPLPDELGEEVNSNSFEIRVAVLGGCLCMTVDYK 293

Query: 274 SEPWDLWVMKEYGVKDSWSKLFTMNENGY-----RVIPLAFSSRGDKVLFQKNSKDHC-- 326
           +   D+WVMKEYG +DSW KLFT+ ++        + PL +S  G KVL +    DH   
Sbjct: 294 TTNVDIWVMKEYGSRDSWCKLFTLVKSSLGLPLESLRPLCYSRDGRKVLLE---GDHVLL 350

Query: 327 --------WYHLDMHRVESFLVKGPS---DVHVCVDTLV--SPFAESNRSLKKKKTRKRR 373
                   WY L   +V    V+G S   D  VCV +LV   P+   N   K+  T KRR
Sbjct: 351 EVQHWKLFWYDLKSEQVS--YVEGNSNLDDAMVCVGSLVPPPPYLVDNGRKKENHTSKRR 408

Query: 374 K 374
           +
Sbjct: 409 E 409

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473337|ref|XP_003606953.1| F-box protein [Medicago truncatula] gi|355508008|gb|AES89150.1| F-box protein [Medicago truncatula]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 146/412 (35%), Positives = 207/412 (50%), Gaps = 60/412 (14%)

Query: 5   KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
           +LP +++ +I  RLP  SLLRFR  SKS + LIDS  FINLHL    + S NRSL+    
Sbjct: 4   ELPPEILTEIFSRLPVISLLRFRSTSKSLKFLIDSYKFINLHL----RNSPNRSLI---- 55

Query: 65  LDYNLKTRFHSLSLDSLGGGDDDGSIIDLRV-NEMFD---------IIIGSCNGLLALK- 113
               L+ +F    L+      + G ++ L   N  F           +IGSCNGLLA+  
Sbjct: 56  ----LRFKFDIYQLEINDDFSNPGVLVLLIPHNHPFTANSEHNNTLTLIGSCNGLLAMSH 111

Query: 114 --------NYPKGIILLNPLTKKHRVLP----KFYRDLHGDKPS-----LHGFGYDVGSD 156
                   N P  I + NP T K+R++P         L  D P+     +HGFG+D  S 
Sbjct: 112 GVMAFTHPNAPNEIAIWNPYTGKYRIIPFLPLPIPNILQSDNPNRGCLCVHGFGFDSLSG 171

Query: 157 DYKLVRIHV---FKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--N 211
           DYKL+RI      ++P Y     ++ LK N W   K I NFPY  A +     G FV  +
Sbjct: 172 DYKLLRISYLLDLQNPFYDPHVRLFSLKTNSW---KIIPNFPY--ALYYTRTMGVFVENS 226

Query: 212 GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV--LKGCLSL 269
            +LHW+A++      +DLILAF+L++ETF  +P+P    E    +   + V  L GCL +
Sbjct: 227 SSLHWVASRKIQPFQSDLILAFNLSLETFNEVPLPDEIGEQVNSKSFKIRVADLGGCLCM 286

Query: 270 LCKYSEP-WDLWVMKEYGVKDSWSKLFTMNENGYRVIP------LAFSSRGDKVLFQKNS 322
              Y +   D+WVMKEYG +DSW KLFT+ ++ +  +P      L +S  G KVL + + 
Sbjct: 287 TVDYKDTKIDVWVMKEYGCRDSWCKLFTVVKSCFDDLPVESLRLLGYSIDGKKVLLRVDV 346

Query: 323 KDHCWYHLDMHRVESFLVK-GPSDVHVCVDTLVSPFAESNRSLKKKKTRKRR 373
            +  WY L+ ++V  F       D  +CV +LV P  E   S K+     R 
Sbjct: 347 VNLFWYDLESNQVSHFQEDLDLDDAMICVGSLVPPPCEDPTSEKRDDFLSRE 398

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053103|ref|XP_002297705.1| predicted protein [Populus trichocarpa] gi|222844963|gb|EEE82510.1| predicted protein [Populus trichocarpa]

 Score =  187 bits (476), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 137/398 (34%), Positives = 203/398 (51%), Gaps = 38/398 (9%)

Query: 9   DVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYN 68
           ++  DIL RLP KSL RFRC+SKS+   IDS  FIN HL RS +  ++ +L++       
Sbjct: 6   EITADILSRLPVKSLKRFRCVSKSWCKEIDSPYFINTHLKRSSQAHTHLNLIL------R 59

Query: 69  LKTRFHSLSLDSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKNYPKGIILLNPLTKK 128
             T   ++ LDS      +     L+ ++    ++GSCNGLLAL N    I L NP T++
Sbjct: 60  DATNLCTVDLDSPDFTSIELKNNPLKSDDCATEVMGSCNGLLALLNSDFSIALYNPSTRE 119

Query: 129 HRVLP----KFYRDLHGDKPS----LHGFGYDVGSDDYKLVR-IHVF-KSP--VYHIEAT 176
            +++P    +   DL   K S     +GFG+D  ++DYK+VR IH +  SP   +H E  
Sbjct: 120 KKMIPVSPLELPNDLDDSKVSSLFNFYGFGHDPINEDYKVVRFIHFYGDSPDGFFHCEVK 179

Query: 177 VYGLKVNLWRRIKNIKN-----FPYSWADHSYGGNGAFVNGALHWLAN--QNQDEMINDL 229
           VY LK N W+RI +         P  +      G G F N A+HW A       E  +DL
Sbjct: 180 VYSLKSNSWKRIDDYPYDLRFILPPDYHPRCRRGYGVFANSAVHWKATVVGKGKENGSDL 239

Query: 230 ILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLC-KYSEPWDLWVMKEYGVK 288
           I+AFDL  E F  +P P + +         V VL GCL + C K  +  ++WVMKEYGVK
Sbjct: 240 IVAFDLGAEEFKIIPQPDYSS---NEHEMNVGVLGGCLCVFCNKNCKQVEIWVMKEYGVK 296

Query: 289 DSWSKLFTMNEN------GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKG 342
           +SW+ L T+              PLA+S  GDK+L + +++   WY L   + +   ++G
Sbjct: 297 ESWTHLCTVIAQLQVKAFWLHARPLAYSKGGDKILLELDNRFFVWYDLRRRKSKIIRIRG 356

Query: 343 PSDV---HVCVDTLVSPFAESNRSLKKKKTRKRRKGKR 377
              +    +CV +LV+           K T+++RK ++
Sbjct: 357 APPIFIAEICVGSLVTLNGGGEGQTSGKDTQEKRKTRK 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	378
TAIR|locus:2135615	413	CPR1 "AT4G12560" [Arabidopsis	0.666	0.610	0.318	2e-41
TAIR|locus:2082410	427	AT3G06240 "AT3G06240" [Arabido	0.642	0.569	0.313	1.6e-36
TAIR|locus:2076196	364	AT3G23880 "AT3G23880" [Arabido	0.888	0.923	0.305	4.9e-30
TAIR|locus:2127465	402	AT4G22390 "AT4G22390" [Arabido	0.5	0.470	0.321	3.3e-25
TAIR|locus:2077452	417	AT3G07870 "AT3G07870" [Arabido	0.740	0.671	0.268	1.4e-17
TAIR|locus:2096079	325	AT3G62380 "AT3G62380" [Arabido	0.494	0.575	0.302	1.4e-14
TAIR|locus:2143186	438	AT5G15660 "AT5G15660" [Arabido	0.843	0.728	0.261	4.8e-14
TAIR|locus:2196964	399	AT1G30790 "AT1G30790" [Arabido	0.724	0.686	0.278	2.5e-13
TAIR|locus:2154169	420	AT5G62510 "AT5G62510" [Arabido	0.727	0.654	0.272	6.7e-13
TAIR|locus:2094947	360	AT3G16210 "AT3G16210" [Arabido	0.465	0.488	0.263	7.8e-13

TAIR|locus:2135615 CPR1 "AT4G12560" [Arabidopsis thaliana (taxid:3702)]

 Score = 334 (122.6 bits), Expect = 2.0e-41, Sum P(2) = 2.0e-41
 Identities = 89/279 (31%), Positives = 139/279 (49%)

Query:   102 IIGSCNGLLALKNYPKGIILLNPLTKK-HRVLPKFYRDLHGDKPS----LHGFGYDVGSD 156
             + GS NGL+ L N P  + + NP T++ HR LP    DL     +     +G GYD  SD
Sbjct:    91 VFGSSNGLIGLSNSPTDLAVFNPSTRQIHR-LPPSSIDLPDGSSTRGYVFYGLGYDSVSD 149

Query:   157 DYKLVRIHVFKSPV-------YHIEATVYGLKVNLWRRIKNIKN----FPYSWADHSYG- 204
             DYK+VR+  FK          +  E  V+ LK N W+RI+++ +      Y +    Y  
Sbjct:   150 DYKVVRMVQFKIDSEDELGCSFPYEVKVFSLKKNSWKRIESVASSIQLLFYFYYHLLYRR 209

Query:   205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPXXXXXXXXXXXXXVYVLK 264
             G G     +LHW+  +    +  +LI+ FDL +E F  +  P             + VL 
Sbjct:   210 GYGVLAGNSLHWVLPRRPGLIAFNLIVRFDLALEEFEIVRFPEAVANGNVDIQMDIGVLD 269

Query:   265 GCLSLLCKYSEPW-DLWVMKEYGVKDSWSKLFTMNE----NGYRVI-PLAFSSRGDKVLF 318
             GCL L+C Y + + D+W+MKEY V+DSW+K+FT+ +      +  + PL +S    KVL 
Sbjct:   270 GCLCLMCNYDQSYVDVWMMKEYNVRDSWTKVFTVQKPKSVKSFSYMRPLVYSKDKKKVLL 329

Query:   319 QKNSKDHCWYHLDMHRVESFLVKG-PSD--VHVCVDTLV 354
             + N+    W+ L+  ++ +  +K  PS     + V +LV
Sbjct:   330 ELNNTKLVWFDLESKKMSTLRIKDCPSSYSAELVVSSLV 368

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0031348 "negative regulation of defense response" evidence=IMP

GO:0042177 "negative regulation of protein catabolic process" evidence=IMP

TAIR|locus:2082410 AT3G06240 "AT3G06240" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 1.6e-36, Sum P(2) = 1.6e-36
 Identities = 84/268 (31%), Positives = 137/268 (51%)

Query:   102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYR----DLHGDKPSLHGFGYDVGSDD 157
             I+GS NGL+ +      + L NP T   + LP+ +R    +   D    +GFG+D  +DD
Sbjct:   165 IVGSSNGLVCISPGEGAVFLYNPTTGDSKRLPENFRPKSVEYERDNFQTYGFGFDGLTDD 224

Query:   158 YKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWL 217
             YKLV++      +  ++A+VY LK + WRRI N+ N+ ++  D SY  +G   NGA+HW+
Sbjct:   225 YKLVKLVATSEDI--LDASVYSLKADSWRRICNL-NYEHN--DGSYT-SGVHFNGAIHWV 278

Query:   218 ANQNQDEMINDLILAFDLNIETFYSMPMPXXXXXXXXXXXXXVY-VLKG--CLSLLCKYS 274
               +++      +++AFD+  E F  MP+P             V   L G  C+   C Y 
Sbjct:   279 FTESRHNQ--RVVVAFDIQTEEFREMPVPDEAEDCSHRFSNFVVGSLNGRLCVVNSC-YD 335

Query:   275 EPWDLWVMKEYGVKDSWSKLFTMNENGYRVI-PLAFSSRGDKVLFQKNSKDHCWYHLDMH 333
                D+WVM EYG   SWS++  +N   YR + PL  +   ++VL + +  D   Y+ + +
Sbjct:   336 VHDDIWVMSEYGEAKSWSRI-RINLL-YRSMKPLCSTKNDEEVLLELDG-DLVLYNFETN 392

Query:   334 RVESFLVKGP--SD---VHVCVDTLVSP 356
                +  + G   SD    +  V++L+SP
Sbjct:   393 ASSNLGICGVKLSDGFEANTYVESLISP 420

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2076196 AT3G23880 "AT3G23880" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 111/363 (30%), Positives = 170/363 (46%)

Query:     6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLH---LSRSIKTSSNRSLV-I 61
             LPL+++ +IL+RLP KSL RF+C+  S+RSLI    F   H   L  S  T+S +S   +
Sbjct:    14 LPLEMMEEILLRLPVKSLTRFKCVCSSWRSLISETLFALKHALILETSKATTSTKSPYGV 73

Query:    62 CSDLDYNLKTR-FHXXXXXXXXXXXXXXXXXXXRVNEMFDIIIGSCNGLLALK-NYPKGI 119
              +   Y+LK+   H                   R  + + ++ G+C+GL+    +Y K +
Sbjct:    74 ITTSRYHLKSCCIHSLYNASTVYVSEHDGELLGR--DYYQVV-GTCHGLVCFHVDYDKSL 130

Query:   120 ILLNPLTKKHRVLPKFYRDLHGDKPSL-HGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY 178
              L NP  K  + L     +   D+  + +GFGYD   DDYK+V +   +  V  IE  +Y
Sbjct:   131 YLWNPTIKLQQRLSSSDLETSDDECVVTYGFGYDESEDDYKVVALLQQRHQV-KIETKIY 189

Query:   179 GLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE 238
               +  LWR   N  +FP          +G ++NG L+W A  +        I+++D++ +
Sbjct:   190 STRQKLWR--SNT-SFPSGVVVADKSRSGIYINGTLNWAATSSSSSWT---IISYDMSRD 243

Query:   239 TFYSMPMPXXXXXXXXXXXXXVYVLKGCLSLLCKYSEPW--DLWVMKEYGVKDSWSKLFT 296
              F  +P P                L+GCLS++C Y +    D+WVMKE+G   SWSKL +
Sbjct:   244 EFKELPGPVCCGRGCFTMTLGD--LRGCLSMVC-YCKGANADVWVMKEFGEVYSWSKLLS 300

Query:   297 MNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD---MHRVESFLVKGPSDVHVCVDTL 353
             +      V PL  S  G  VL +  S     Y+      H   S  + G  D  V + T+
Sbjct:   301 IPGLTDFVRPLWISD-GLVVLLEFRS-GLALYNCSNGRFHYPVSNSISGCRDAKVYLKTM 358

Query:   354 VSP 356
             VSP
Sbjct:   359 VSP 361

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IDA

TAIR|locus:2127465 AT4G22390 "AT4G22390" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
 Identities = 70/218 (32%), Positives = 104/218 (47%)

Query:    99 FDIIIGSCNGLLALKNYPKGIILLNPLTKK-HR--VLPKFY--RDLHGDKPSLHGFGYDV 153
             F  + GS NG++ L N P  + + NP T+K HR  + P  +  RD+  +    +G GYD 
Sbjct:    88 FTEVFGSFNGVIGLCNSPVDLAIFNPSTRKIHRLPIEPIDFPERDITREYV-FYGLGYDS 146

Query:   154 GSDDYKLVRI---------HVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYG 204
               DD+K+VRI           F  PV   E  V+ LK N W+R+  +  F   W  + Y 
Sbjct:   147 VGDDFKVVRIVQCKLKEGKKKFPCPV---EVKVFSLKKNSWKRVCLMFEFQILWISYYYH 203

Query:   205 -----GNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPXXXXXXXXXXXXX 259
                  G G  VN  LHW+  + Q  +  + I+ +DL  +    +  P             
Sbjct:   204 LLPRRGYGVVVNNHLHWILPRRQGVIAFNAIIKYDLASDDIGVLSFPQELYIEDNMD--- 260

Query:   260 VYVLKGCLSLLC--KYSEPWDLWVMKEYGVKDSWSKLF 295
             + VL GC+ L+C  +YS   D+WV+KEY    SW+KL+
Sbjct:   261 IGVLDGCVCLMCYDEYSHV-DVWVLKEYEDYKSWTKLY 297

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077452 AT3G07870 "AT3G07870" [Arabidopsis thaliana (taxid:3702)]

 Score = 231 (86.4 bits), Expect = 1.4e-17, P = 1.4e-17
 Identities = 84/313 (26%), Positives = 136/313 (43%)

Query:     6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDL 65
             LP D+I DI  RLP  S+ R   + +S+RS++         LS S  + +   L++    
Sbjct:    28 LPEDIIADIFSRLPISSIARLMFVCRSWRSVLTQHG----RLSSSSSSPTKPCLLL--HC 81

Query:    66 DYNLKTRFHXXXXXXXXXXXXXXXXXXXRVNEM--FDIIIGSCNGLLALKN--YPKGIIL 121
             D  ++   H                     + M  FD++ GSCNGLL L +  Y   + L
Sbjct:    82 DSPIRNGLHFLDLSEEEKRIKTKKFTLRFASSMPEFDVV-GSCNGLLCLSDSLYNDSLYL 140

Query:   122 LNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSP------VYHIEA 175
              NP T     LP+     H D+  + GFG+   + +YK+++I  F+        +Y    
Sbjct:   141 YNPFTTNSLELPECSNKYH-DQELVFGFGFHEMTKEYKVLKIVYFRGSSSNNNGIYRGRG 199

Query:   176 TV-YGL-KVNLWRRIKNIKNFPYSW-----ADHSY--GGNGAFVNGALHWLANQNQDEMI 226
              + Y   +V +        +   SW     A + +    + A VNG LH++    +  + 
Sbjct:   200 RIQYKQSEVQILTLSSKTTDQSLSWRSLGKAPYKFVKRSSEALVNGRLHFVTRPRR-HVP 258

Query:   227 NDLILAFDLNIETFYSMPMPXXXXXXXXXXXXXVYVLKGCLSLLC--KYSEPWDLWVMKE 284
             +   ++FDL  E F  +P P             +  LKGCL  +    Y +  D+WVMK 
Sbjct:   259 DRKFVSFDLEDEEFKEIPKPDCGGLNRTNHR--LVNLKGCLCAVVYGNYGK-LDIWVMKT 315

Query:   285 YGVKDSWSKLFTM 297
             YGVK+SW K +++
Sbjct:   316 YGVKESWGKEYSI 328

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2096079 AT3G62380 "AT3G62380" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 63/208 (30%), Positives = 98/208 (47%)

Query:   102 IIGSCNGLLALKNYPKGII-LLNPLTKKHRVL-PKFYRDLHG------DKPSLHGFGYDV 153
             I+G CNG++ +  Y  G I L+NP T+K R+L P+F R+  G      D P   GFG D+
Sbjct:    74 IMGYCNGIVCI--YDLGYIYLINPATRKLRILSPEFLREYTGRTGWSNDLPINVGFGRDM 131

Query:   154 GSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA 213
              +  YK++ +++F       EA      +NL    +    FP S+          F NG+
Sbjct:   132 VTGTYKVILMYLFDRNFVKTEA------LNLKNGERRYVYFPISYGQLGNDKRSIFANGS 185

Query:   214 LHWLANQNQDEMINDLI--LAFDLNIETFYSMPMPXXXXXXXXXXXXXVYVLKGCLSLLC 271
             L+WL   + D   N LI   A DL+ ETF  +P+P             ++ LK  L +  
Sbjct:   186 LYWLPKPDVDFYTNQLIKLAAIDLHTETFRYVPLPSWYTKYCKSVY--LWSLKDSLCVSD 243

Query:   272 KYSEPW-DLWVMKEYGVKDSWSKLFTMN 298
                 P  D+W +++      W K+F++N
Sbjct:   244 VLQNPSVDVWSLQQEEPSVKWEKMFSVN 271

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2143186 AT5G15660 "AT5G15660" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.8e-14, P = 4.8e-14
 Identities = 94/359 (26%), Positives = 158/359 (44%)

Query:     5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
             ++P D++I+IL RLP KS+ RF  +SK + + I S DF   +  R   +S  R+L++ SD
Sbjct:    27 EIPHDLVIEILERLPLKSVARFLTVSKLWATTIRSPDFRKSY--RGGSSSEPRTLIV-SD 83

Query:    65 LDY---NLKTRFHXXXXXXXXXXXXXXXXXXXRVNEMFDIIIGSCNGLLALKNYPKGIIL 121
             L++   N K  F                      +E +       NGL+++  Y    I+
Sbjct:    84 LNFKEPNPKLHFFRPSISSPSFLSSLTCPFTYPRHEEY--YYHHVNGLISV-GYGTDQIV 140

Query:   122 LNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLV------RIHVFKSPVYHIEA 175
             +NP T K   LP   R     K  +  FGYD  SD YK++      R H  ++   H   
Sbjct:   141 INPTTGKFITLP---RPKTRRKLVISFFGYDSVSDQYKVLCMTERLRGHPEEASSQHQVY 197

Query:   176 TVYGLKVNLWRRIK-NIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFD 234
             T+ G K   W+ I  +I + P+SW       N   +NG ++++A   +  M    ++ FD
Sbjct:   198 TL-GAKQKSWKMINCSIPHRPWSW-------NAVCINGVVYYIAKTGEG-MFRRCLMRFD 248

Query:   235 LNIETF-YSMPMPXXXXXXXXXXXXXVYVLKGCLSLLCKYS-EPWDLWVMKEYGVKDSWS 292
             L  +       +P              Y  KG +++  + +   +D+WVM + G K  W 
Sbjct:   249 LKSDNLDLCTILPEEIQTSLHDYFLINY--KGKVAIPNQPNFYTYDVWVMNQEGGKIEWL 306

Query:   293 K--LFTMN-ENGY-RVIPLAFSSR-GDKVLFQKNSKDHCW---YHLDMHRVESFLVKGP 343
             K   FT+    G+ R + +  ++  G+ +L   +  D  +   Y+ DM+      V+ P
Sbjct:   307 KNITFTIKPRKGFVRYLFVTGTTHTGEFILAPTSYTDEFYVFHYNPDMNSFRKIRVQAP 365

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2196964 AT1G30790 "AT1G30790" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 86/309 (27%), Positives = 129/309 (41%)

Query:     6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLS------RSIKTSSNRSL 59
             +P D+ ++IL RLP KSL++F+C+SK + S+I ++ FI+   S      R I   SN S 
Sbjct:     9 IPFDLTVEILTRLPAKSLMKFKCVSKLWSSIIHNQSFIDSFYSISSTRPRFIVAFSNGSF 68

Query:    60 VICSDLDYNLKTRFHXXXXXXXXXXXXXXXXXXXRV--NEMFDIIIGSCNGLLALKNYPK 117
                 +    + +  H                       N +    I S NG +A   Y +
Sbjct:    69 PSDKEKRLFIFSSSHEGHESSSSVITNLDTTIPSLTVSNNLASRCI-SVNGFIACSLYTR 127

Query:   118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHG--FGYDVGSDDYKLVR-----IHVFKSPV 170
                + NP T++  VLP       G  P +     GYD   D +K +      I    S V
Sbjct:   128 -FTICNPSTRQVIVLPILPS---GRAPDMRSTCIGYDPVDDQFKALALISSCIPNKDSTV 183

Query:   171 YHIEATVYGLKVNL-WRRIKNIKNFP-YSWADHSYGGNGAFVNGALHWLANQNQDEMIND 228
              H+  T+ G K N  WR+I+   N P YS        NG    GA  W   Q+    +N 
Sbjct:   184 EHLVLTLKGDKKNYSWRQIQGNNNIPPYSPVTMRVCINGVVYYGA--WTPRQS----MNA 237

Query:   229 LILAFDLNIETFYSMPMPXXXXXXXXXXXXXVYVLKGCLSLLCK--YS--EPWDLWVMKE 284
             +I+ FD+  E    +  P              Y  KG L+ + +  YS  + +DLWV+++
Sbjct:   238 VIVCFDVRSEKITFIKTPKDVVRWCNDSILMEY--KGKLASIVRNRYSRFDTFDLWVLED 295

Query:   285 YGVKDSWSK 293
                K  WSK
Sbjct:   296 IE-KQEWSK 303

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2154169 AT5G62510 "AT5G62510" [Arabidopsis thaliana (taxid:3702)]

 Score = 194 (73.4 bits), Expect = 6.7e-13, P = 6.7e-13
 Identities = 82/301 (27%), Positives = 133/301 (44%)

Query:     5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSD 64
             ++PLD++I+IL RLP KSL+RF+C+SK + SLI S+ F N +L+ +     +R  +   D
Sbjct:    43 EIPLDLLIEILTRLPHKSLMRFKCVSKQWSSLIRSRFFSNRYLTVASPLRPHRLYISLVD 102

Query:    65 LDYNLKTRFHX--XXXXXXXXXXXXXXXXXXRVNEMFDIIIGSCNGLLALKNYPKGIILL 122
                + +   H                      +  M  + + +  GL+      K   L 
Sbjct:   103 HKCDSREVCHSPRESVLLSFSSPSSFDQDLTTMQGMGGLHMVTLRGLILYIVCGKAC-LY 161

Query:   123 NPLTKKHRVLP--KFYRDLHGDKPSLHGF-GYDVGSDDYKLVRIHVFKSP--VYHI--EA 175
             NP T++   LP  KF   + G++ SL  F G+D   D YK+V   V  S   +  I  E 
Sbjct:   162 NPTTRQSVTLPAIKFNIFVQGNEHSLLYFLGHDPVLDQYKVVCTFVSSSSQDLETIISEH 221

Query:   176 TVYGLKVN-LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFD 234
              V+ L+V   W+RI+    F      H+   +G  + G +++LA  +   M  D+++ FD
Sbjct:   222 WVFVLEVGGSWKRIE----FDQP---HTPTRSGLCIGGVIYYLAFTS---MFQDIVVTFD 271

Query:   235 LNIETFYSMPMPXXXXXXXXXXXXXVYVLKGCLSLLCKYSEPW--DLWVMKEYGVKDSWS 292
             +  E F  +  P              Y  K  +       E    DLWV++  G   +WS
Sbjct:   272 VRSEEFNIIQAPLVLSAYVDSLDFIEYGGKPAIFYHTSLKENGLVDLWVLENAG---NWS 328

Query:   293 K 293
             +
Sbjct:   329 R 329

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2094947 AT3G16210 "AT3G16210" [Arabidopsis thaliana (taxid:3702)]

 Score = 143 (55.4 bits), Expect = 7.8e-13, Sum P(2) = 7.8e-13
 Identities = 53/201 (26%), Positives = 96/201 (47%)

Query:   106 CNGLLA--LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRI 163
             C+G L   LKN+   +++ NP +K+ +++P     ++ D   L GFGYD   DDYK+V  
Sbjct:    95 CDGTLCVTLKNHT--LMVWNPFSKQFKIVPN--PGIYQDSNIL-GFGYDPVHDDYKVV-- 147

Query:   164 HVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQD 223
               F   +    A V+  +   W     I ++P  W  H     G F++  L+W+A ++  
Sbjct:   148 -TFIDRLDVSTAHVFEFRTGSWGESLRI-SYP-DW--HYRDRRGTFLDQYLYWIAYRSSA 202

Query:   224 EMINDLILAFDLNIETFYSMPMPXXXXXXXXXXXXXVYVLKGCLSL--LCKYSEPWDLWV 281
             +     IL F+L+   +  +P+P             V   K C++   +CK  +   + V
Sbjct:   203 DRF---ILCFNLSTHEYRKLPLPVYNQGVTSSWLG-VTSQKLCITEYEMCK--KEIRISV 256

Query:   282 MKEYGVKDSWSKLFTMNENGY 302
             M++ G   SWSK+ +++ + +
Sbjct:   257 MEKTG---SWSKIISLSMSSF 274

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SU30	CPR30_ARATH	No assigned EC number	0.3076	0.9656	0.8837	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00010191 hypothetical protein (408 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	378
TIGR01640	230	TIGR01640, F_box_assoc_1, F-box protein interactio	7e-26
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	8e-08
pfam00646	48	pfam00646, F-box, F-box domain	3e-07
pfam07734	159	pfam07734, FBA_1, F-box associated	8e-07
pfam12937	47	pfam12937, F-box-like, F-box-like	7e-04

>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain

 Score =  103 bits (259), Expect = 7e-26
 Identities = 60/237 (25%), Positives = 98/237 (41%), Gaps = 17/237 (7%)

Query: 103 IGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVR 162
           +  C+GL+   +Y K +++ NP T + R LP         +   +  GYD     YK++ 
Sbjct: 1   VVPCDGLICF-SYGKRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLC 59

Query: 163 IHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQ 222
                      E  VY L  N WR I+           H     G  +NG L++LA    
Sbjct: 60  FSDRSGNRNQSEHQVYTLGSNSWRTIEC----SPPH--HPLKSRGVCINGVLYYLAY-TL 112

Query: 223 DEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS--EPWDLW 280
               +  I++FD++ E F        GN      LS +   KG L++L +      +DLW
Sbjct: 113 KTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLS-LINYKGKLAVLKQKKDTNNFDLW 171

Query: 281 VMKEYGVKDSWSKLFTMNENGY-----RVIPLAFSSRGDKVLFQKNSKDHCWYHLDM 332
           V+ + G K  WSKLFT+                F+ +G+ VL  ++      ++ ++
Sbjct: 172 VLNDAG-KQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDENPFYIFYYNV 227

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain. Length = 230

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 47.8 bits (115), Expect = 8e-08
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 6  LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLH 46
          LP +++ +IL +L  K LLR R +S+ +RSLIDS DF    
Sbjct: 1  LPDEILEEILSKLDPKDLLRLRKVSRKWRSLIDSHDFWFKL 41

Length = 41

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 46.4 bits (111), Expect = 3e-07
 Identities = 19/44 (43%), Positives = 26/44 (59%)

Query: 5  KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLS 48
           LP D++++IL RL  K LLR   +SK +RSL+DS       L 
Sbjct: 5  DLPDDLLLEILSRLDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|219544 pfam07734, FBA_1, F-box associated

 Score = 48.0 bits (115), Expect = 8e-07
 Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 11/98 (11%)

Query: 207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVLKG 265
           G  + G  +WLA   ++    D +L+FD   E F   +P+P    +     LS   V++ 
Sbjct: 1   GVSLKGNTYWLA-SEKETNEEDFLLSFDFTTERFGPRLPLPFQSPDLDTVSLS---VVRE 56

Query: 266 -CLSLL--CKYSEPWDLWVMK--EYGVKDSWSKLFTMN 298
             L++L  C  +   ++WV    E     SWSK  T++
Sbjct: 57  EKLAVLLQCDDTSKIEIWVTTKIEPNAV-SWSKFLTVD 93

Most of these proteins contain pfam00646 at the N terminus, suggesting that they are effectors linked with ubiquitination. Length = 159

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 9/36 (25%), Positives = 17/36 (47%)

Query: 4  WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDS 39
            LP ++++ I   L  + LLR   + + +R L   
Sbjct: 2  SDLPDEILLQIFSYLDPRDLLRLALVCRRWRELASD 37

This is an F-box-like family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	378
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	100.0
PF07734	164	FBA_1: F-box associated; InterPro: IPR006527 This	99.61
PF08268	129	FBA_3: F-box associated domain; InterPro: IPR01318	99.53
PHA02713	557	hypothetical protein; Provisional	99.51
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	99.48
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.45
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	99.43
PHA02713	557	hypothetical protein; Provisional	99.38
PHA03098	534	kelch-like protein; Provisional	99.36
PHA02790	480	Kelch-like protein; Provisional	99.29
PLN02153	341	epithiospecifier protein	99.28
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	99.22
PLN02193	470	nitrile-specifier protein	99.2
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	99.16
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	99.1
PHA03098	534	kelch-like protein; Provisional	99.05
PLN02193	470	nitrile-specifier protein	99.02
PLN02153	341	epithiospecifier protein	98.97
PHA02790	480	Kelch-like protein; Provisional	98.97
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.74
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.66
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	98.65
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	98.61
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.61
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.61
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	98.58
KOG1230	521	consensus Protein containing repeated kelch motifs	98.52
KOG4693	392	consensus Uncharacterized conserved protein, conta	98.17
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.96
KOG0379	482	consensus Kelch repeat-containing proteins [Genera	97.83
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	97.82
KOG1230	521	consensus Protein containing repeated kelch motifs	97.65
PF13964	50	Kelch_6: Kelch motif	97.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.11
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	97.1
PF07646	49	Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is	96.49
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	96.28
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	95.94
KOG2997	366	consensus F-box protein FBX9 [General function pre	95.86
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	95.8
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	95.49
PF02191	250	OLF: Olfactomedin-like domain; InterPro: IPR003112	95.05
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	94.96
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	94.93
KOG1274	933	consensus WD40 repeat protein [General function pr	94.86
smart00284	255	OLF Olfactomedin-like domains.	94.66
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	94.64
COG3055	381	Uncharacterized protein conserved in bacteria [Fun	94.35
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.25
PLN00181	793	protein SPA1-RELATED; Provisional	94.14
COG4946	668	Uncharacterized protein related to the periplasmic	94.06
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	94.04
smart00612	47	Kelch Kelch domain.	93.55
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.39
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	93.34
PF13964	50	Kelch_6: Kelch motif	93.24
KOG2055	514	consensus WD40 repeat protein [General function pr	92.79
PLN02772	398	guanylate kinase	92.36
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	91.95
PF01344	47	Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is	91.87
KOG0289	506	consensus mRNA splicing factor [General function p	91.77
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	91.47
smart00612	47	Kelch Kelch domain.	91.32
PF13415	49	Kelch_3: Galactose oxidase, central domain	91.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	91.11
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	90.77
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	90.47
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	90.23
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	89.08
PF07762	131	DUF1618: Protein of unknown function (DUF1618); In	88.99
PF07893	342	DUF1668: Protein of unknown function (DUF1668); In	88.03
KOG0316	307	consensus Conserved WD40 repeat-containing protein	86.59
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.29
TIGR01640	230	F_box_assoc_1 F-box protein interaction domain. Th	86.01
KOG4152	830	consensus Host cell transcription factor HCFC1 [Ce	85.53
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	85.19
KOG0294	362	consensus WD40 repeat-containing protein [Function	84.75
KOG0647	347	consensus mRNA export protein (contains WD40 repea	84.53
PF13418	49	Kelch_4: Galactose oxidase, central domain; PDB: 2	84.33
KOG0645	312	consensus WD40 repeat protein [General function pr	83.55
PRK11028	330	6-phosphogluconolactonase; Provisional	83.28
PRK11028	330	6-phosphogluconolactonase; Provisional	83.15
cd01206	111	Homer Homer type EVH1 domain. Homer type EVH1 doma	81.74
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	81.71
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	81.7
KOG4341	483	consensus F-box protein containing LRR [General fu	81.61
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	81.41

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=100.00  E-value=3.1e-33  Score=245.24  Aligned_cols=219  Identities=26%  Similarity=0.420  Sum_probs=163.5

Q ss_pred             eeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          103 IGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       103 ~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      +++||||||+... ..++||||+||+++.||+++.+........++||||+.+++||||++...........++||++++
T Consensus         1 ~~sCnGLlc~~~~-~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~   79 (230)
T TIGR01640         1 VVPCDGLICFSYG-KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGS   79 (230)
T ss_pred             CcccceEEEEecC-CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCC
Confidence            4799999998865 789999999999999997764321112226799999999999999997643333457899999999


Q ss_pred             CcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEE
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~  261 (378)
                      ++||.+...   +.  .... ...+|++||.+||++....+. ....|++||+.+|+|+ .+++|...... .... .|+
T Consensus        80 ~~Wr~~~~~---~~--~~~~-~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~~P~~~~~~-~~~~-~L~  150 (230)
T TIGR01640        80 NSWRTIECS---PP--HHPL-KSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIPLPCGNSDS-VDYL-SLI  150 (230)
T ss_pred             CCccccccC---CC--Cccc-cCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeeecCcccccc-ccce-EEE
Confidence            999999754   32  2222 223999999999999764321 1137999999999999 58999765321 1234 789


Q ss_pred             EECCeEEEEEcCCC--cEEEEEeccCCCCcceEEEEEecC-CC----ceeEEEEEEeCCCEEEEEeCC--Ce-EEEEECC
Q 044435          262 VLKGCLSLLCKYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NG----YRVIPLAFSSRGDKVLFQKNS--KD-HCWYHLD  331 (378)
Q Consensus       262 ~~~G~L~~~~~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~----~~~~~~~~~~~g~~v~~~~~~--~~-~~~ydl~  331 (378)
                      +++|+|+++.....  +++||+|++++.. .|++.++|+. ..    ....+.++..+|+ |++....  .. ++.||++
T Consensus       151 ~~~G~L~~v~~~~~~~~~~IWvl~d~~~~-~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~-I~~~~~~~~~~~~~~y~~~  228 (230)
T TIGR01640       151 NYKGKLAVLKQKKDTNNFDLWVLNDAGKQ-EWSKLFTVPIPPLPDLVDDNFLSGFTDKGE-IVLCCEDENPFYIFYYNVG  228 (230)
T ss_pred             EECCEEEEEEecCCCCcEEEEEECCCCCC-ceeEEEEEcCcchhhhhhheeEeEEeeCCE-EEEEeCCCCceEEEEEecc
Confidence            99999999998643  7999999988754 5999999984 22    1145788888888 5554443  34 9999998


Q ss_pred             CC
Q 044435          332 MH  333 (378)
Q Consensus       332 ~~  333 (378)
                      ++
T Consensus       229 ~~  230 (230)
T TIGR01640       229 EN  230 (230)
T ss_pred             CC
Confidence            75

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants

Probab=99.61  E-value=7.1e-14  Score=115.51  Aligned_cols=141  Identities=30%  Similarity=0.537  Sum_probs=97.8

Q ss_pred             ceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC--cEEEEEe
Q 044435          207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE--PWDLWVM  282 (378)
Q Consensus       207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~--~l~iW~l  282 (378)
                      +|++||.+||++....... ...|++||+.+|+| ..+++|...... .... .|++. +|+||++.....  .++||+|
T Consensus         1 gV~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~lP~~~~~~-~~~~-~L~~v~~~~L~~~~~~~~~~~~~IWvm   77 (164)
T PF07734_consen    1 GVFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPLPFCNDDD-DDSV-SLSVVRGDCLCVLYQCDETSKIEIWVM   77 (164)
T ss_pred             CEEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECCCCccCcc-CCEE-EEEEecCCEEEEEEeccCCccEEEEEE
Confidence            6899999999998764321 12799999999999 788999877621 2334 66554 779999976443  7999999


Q ss_pred             ccCCC-CcceEEEEEecC-CCc--e----eEEEEEEeCCCEEEEEeC-C------CeEEEEECCCCeEEEEeEeC---Cc
Q 044435          283 KEYGV-KDSWSKLFTMNE-NGY--R----VIPLAFSSRGDKVLFQKN-S------KDHCWYHLDMHRVESFLVKG---PS  344 (378)
Q Consensus       283 ~~~~~-~~~W~~~~~i~~-~~~--~----~~~~~~~~~g~~v~~~~~-~------~~~~~ydl~~~~~~~v~~~~---~~  344 (378)
                      ++++. ..+|++..+|+. ...  .    ...+-+..+++ +++... .      ..++.|+ +++..+++.+..   ..
T Consensus        78 ~~~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~-vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~~~~~~~~~  155 (164)
T PF07734_consen   78 KKYGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKK-VLVCCDKETQREEKNKIYIVG-EDGKFIEVDIEDKSSCW  155 (164)
T ss_pred             eeeccCcceEEEEEEEecCCCCCcccccccceEEEeCCCe-EEEEEcCCCCccceeEEEEEc-CCCEEEEcccccCCCCC
Confidence            97653 678999999987 331  1    12233333444 444432 2      2377887 778888887743   22


Q ss_pred             -ceEEeeec
Q 044435          345 -DVHVCVDT  352 (378)
Q Consensus       345 -~~~~y~~s  352 (378)
                       .++.|+||
T Consensus       156 ~~~~~YvpS  164 (164)
T PF07734_consen  156 PSICNYVPS  164 (164)
T ss_pred             CCEEEECCC
Confidence             78899987

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants

Probab=99.53  E-value=2.7e-13  Score=107.40  Aligned_cols=107  Identities=25%  Similarity=0.430  Sum_probs=81.0

Q ss_pred             ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEe
Q 044435          207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVM  282 (378)
Q Consensus       207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l  282 (378)
                      |+++||.+||++...  ......|++||+++|+|+.|++|...... .... .|.+.+|+|+++.....    .++||+|
T Consensus         1 gicinGvly~~a~~~--~~~~~~IvsFDv~~E~f~~i~~P~~~~~~-~~~~-~L~~~~G~L~~v~~~~~~~~~~~~iWvL   76 (129)
T PF08268_consen    1 GICINGVLYWLAWSE--DSDNNVIVSFDVRSEKFRFIKLPEDPYSS-DCSS-TLIEYKGKLALVSYNDQGEPDSIDIWVL   76 (129)
T ss_pred             CEEECcEEEeEEEEC--CCCCcEEEEEEcCCceEEEEEeeeeeccc-cCcc-EEEEeCCeEEEEEecCCCCcceEEEEEe
Confidence            689999999999872  12236999999999999999998221111 2334 88999999999987654    4999999


Q ss_pred             ccCCCCcceEEEEEe-cC-C--C---ceeEEEEEEeCCCEEEE
Q 044435          283 KEYGVKDSWSKLFTM-NE-N--G---YRVIPLAFSSRGDKVLF  318 (378)
Q Consensus       283 ~~~~~~~~W~~~~~i-~~-~--~---~~~~~~~~~~~g~~v~~  318 (378)
                      +|++. .+|++.+.+ +. .  .   ....+.++.++|++|+.
T Consensus        77 eD~~k-~~Wsk~~~~lp~~~~~~~~~~~~~~~g~~~~Geiv~~  118 (129)
T PF08268_consen   77 EDYEK-QEWSKKHIVLPPSWQHFVHDCDFSFVGVTDTGEIVFA  118 (129)
T ss_pred             ecccc-ceEEEEEEECChHHhcccCCcEEEEEEEcCCCEEEEE
Confidence            99864 679988653 33 1  1   35778899999996665

Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.

>PHA02713 hypothetical protein; Provisional

Probab=99.51  E-value=2.9e-12  Score=126.02  Aligned_cols=199  Identities=9%  Similarity=0.122  Sum_probs=131.0

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..+..+||.+++|..+|+++.++..       ++.....+...|++..  ........+++|++.++.|+.++.+   |.
T Consensus       320 ~~v~~Yd~~~n~W~~~~~m~~~R~~-------~~~~~~~g~IYviGG~--~~~~~~~sve~Ydp~~~~W~~~~~m---p~  387 (557)
T PHA02713        320 NKVYKINIENKIHVELPPMIKNRCR-------FSLAVIDDTIYAIGGQ--NGTNVERTIECYTMGDDKWKMLPDM---PI  387 (557)
T ss_pred             ceEEEEECCCCeEeeCCCCcchhhc-------eeEEEECCEEEEECCc--CCCCCCceEEEEECCCCeEEECCCC---Cc
Confidence            3477899999999999999865321       1111123344455543  2222345799999999999999888   54


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCc-----------------ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDE-----------------MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS  258 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~-----------------~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~  258 (378)
                          .......+.++|+||.+++.....                 .....+.+||+.+++|+.+ ++|....     .. 
T Consensus       388 ----~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~-----~~-  457 (557)
T PHA02713        388 ----ALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTI-----RP-  457 (557)
T ss_pred             ----ccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccc-----cC-
Confidence                233445788999999999764210                 0125799999999999988 6654432     22 


Q ss_pred             eEEEECCeEEEEEcCCC-c--E-EEEEeccCCCC-cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC--eEEEEEC
Q 044435          259 GVYVLKGCLSLLCKYSE-P--W-DLWVMKEYGVK-DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK--DHCWYHL  330 (378)
Q Consensus       259 ~l~~~~G~L~~~~~~~~-~--l-~iW~l~~~~~~-~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~--~~~~ydl  330 (378)
                      .+++.+|+||++++..+ .  . .+-..+..  . +.|+.+..++. +.  ...+++. +|.+.++++.++  .+-.||+
T Consensus       458 ~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~--~~~~W~~~~~m~~~r~--~~~~~~~-~~~iyv~Gg~~~~~~~e~yd~  532 (557)
T PHA02713        458 GVVSHKDDIYVVCDIKDEKNVKTCIFRYNTN--TYNGWELITTTESRLS--ALHTILH-DNTIMMLHCYESYMLQDTFNV  532 (557)
T ss_pred             cEEEECCEEEEEeCCCCCCccceeEEEecCC--CCCCeeEccccCcccc--cceeEEE-CCEEEEEeeecceeehhhcCc
Confidence            67889999999987643 1  1 23333331  3 47999887776 33  1122222 566455554343  4889999


Q ss_pred             CCCeEEEEeEeC
Q 044435          331 DMHRVESFLVKG  342 (378)
Q Consensus       331 ~~~~~~~v~~~~  342 (378)
                      +|++|+.+.-++
T Consensus       533 ~~~~W~~~~~~~  544 (557)
T PHA02713        533 YTYEWNHICHQH  544 (557)
T ss_pred             ccccccchhhhc
Confidence            999999986554

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=99.48  E-value=1.7e-11  Score=111.80  Aligned_cols=297  Identities=14%  Similarity=0.108  Sum_probs=151.4

Q ss_pred             CCC-CCCCHHHHHHHHhcCC-ccccceeeecchhhhcccCChhHHHHHHhhcccCCCCeEEEEEecCCCCceeEEEeccC
Q 044435            1 MAT-WKLPLDVIIDILIRLP-GKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYNLKTRFHSLSL   78 (378)
Q Consensus         1 m~~-~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~   78 (378)
                      |+. +.||+|||..|..||| ..+++|+|+||++||+.+....     .  .++.+..|+++...- .+...  +.+ +.
T Consensus         1 ~~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~~~-----~--~~~~~~~~~~~~~~~-~~~~~--~~~-~~   69 (373)
T PLN03215          1 MADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSGVG-----K--KNPFRTRPLILFNPI-NPSET--LTD-DR   69 (373)
T ss_pred             CCChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccccc-----c--cCCcccccccccCcc-cCCCC--ccc-cc
Confidence            555 6799999999999997 6699999999999999877421     0  000001122222110 00000  000 00


Q ss_pred             CCCCCCCCCCceeecccCccceEEeeeccceEEEee---cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC
Q 044435           79 DSLGGGDDDGSIIDLRVNEMFDIIIGSCNGLLALKN---YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS  155 (378)
Q Consensus        79 ~~~~~~~~~~~~~~l~~~~~~~~~~~s~~GLl~l~~---~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~  155 (378)
                      ..+..  ....+....+ ..+....++..|.|....   .+..+.+.||.++.-..+|+-..       ...-|-+.+.+
T Consensus        70 ~~~~~--~~~~ls~~~~-~r~~~~~~~~~~WLik~~~~~~~~~~~Ll~PLsr~~~~~~~~~l-------nll~f~v~ei~  139 (373)
T PLN03215         70 SYISR--PGAFLSRAAF-FRVTLSSSPSKGWLIKSDMDVNSGRFHLLNPLSRLPLRHSSESV-------DLLEFTVSEIR  139 (373)
T ss_pred             ccccc--ccceeeeeEE-EEeecCCCCCCCcEEEEeccccCCccEecCccccCccCCCCccc-------eeeeeEEEEcc
Confidence            00000  0000000000 000011234678877664   34778999999999776664221       11112111111


Q ss_pred             CC---------------eE-EEEEEEecCCC-cceEEEEEEc------CCCcEEecCcccCCCccccccccCCcceeeCC
Q 044435          156 DD---------------YK-LVRIHVFKSPV-YHIEATVYGL------KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNG  212 (378)
Q Consensus       156 ~~---------------yk-vv~~~~~~~~~-~~~~~~vyss------~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G  212 (378)
                      ..               |+ ++.+.....++ ....+-|+..      ..++|..++.+   ..      ....-|+++|
T Consensus       140 ~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l~~~---~~------~~~DIi~~kG  210 (373)
T PLN03215        140 EAYQVLDWAKRRETRPGYQRSALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKALKQM---GY------HFSDIIVHKG  210 (373)
T ss_pred             ceEEEEecccccccccceeEEEEEEeecCCCcceEEEEEeecCcEeeecCCeeeEccCC---Cc------eeeEEEEECC
Confidence            11               21 11111111111 1112222222      14788887654   22      1244799999


Q ss_pred             eEEEEeecCCCcccceEEEEEEcCCceeeeecC--CCCCCC-CCCcccceEEEECCeEEEEEcCC---------------
Q 044435          213 ALHWLANQNQDEMINDLILAFDLNIETFYSMPM--PGFGNE-GGGGELSGVYVLKGCLSLLCKYS---------------  274 (378)
Q Consensus       213 ~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~l--P~~~~~-~~~~~~~~l~~~~G~L~~~~~~~---------------  274 (378)
                      ++|.+...+       .+.++|..-+ .+.+..  ...... ...... .|+++.|.|++|....               
T Consensus       211 kfYAvD~~G-------~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~-yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~  281 (373)
T PLN03215        211 QTYALDSIG-------IVYWINSDLE-FSRFGTSLDENITDGCWTGDR-RFVECCGELYIVERLPKESTWKRKADGFEYS  281 (373)
T ss_pred             EEEEEcCCC-------eEEEEecCCc-eeeecceecccccCCcccCce-eEEEECCEEEEEEEEccCccccccccccccc
Confidence            999995543       4666664321 222211  100100 001233 7899999999988631               


Q ss_pred             --CcEEEEEeccCCCCcceEEEEEecC-CCce--eEEEEEE------eCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435          275 --EPWDLWVMKEYGVKDSWSKLFTMNE-NGYR--VIPLAFS------SRGDKVLFQKNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       275 --~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~--~~~~~~~------~~g~~v~~~~~~~~~~~ydl~~~~~~~v~  339 (378)
                        ..++|+.++..  ...|+++..++. .++.  -...++.      -.++.|++..+. -..+||++.++...+.
T Consensus       282 ~t~~f~VfklD~~--~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~~~  354 (373)
T PLN03215        282 RTVGFKVYKFDDE--LAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSSIE  354 (373)
T ss_pred             ceeEEEEEEEcCC--CCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccceE
Confidence              15788888753  357999988875 3211  1111111      135668887544 4889999999977774

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.45  E-value=4.4e-12  Score=124.32  Aligned_cols=212  Identities=15%  Similarity=0.176  Sum_probs=143.5

Q ss_pred             EeeeccceEEEee--c-----CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceE
Q 044435          102 IIGSCNGLLALKN--Y-----PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIE  174 (378)
Q Consensus       102 ~~~s~~GLl~l~~--~-----~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  174 (378)
                      .++..+|.|.+.+  +     .+....+||.+++|..+|++...+.       .+|.....+.-.+|+..  ++......
T Consensus       327 ~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~-------~~~v~~l~g~iYavGG~--dg~~~l~s  397 (571)
T KOG4441|consen  327 GVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRS-------DFGVAVLDGKLYAVGGF--DGEKSLNS  397 (571)
T ss_pred             cEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccc-------cceeEEECCEEEEEecc--cccccccc
Confidence            4455566655443  1     2357899999999999999987542       23333333444555544  34455668


Q ss_pred             EEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCC
Q 044435          175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGG  253 (378)
Q Consensus       175 ~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~  253 (378)
                      +|.|++.++.|..++.|       .........+.++|.||.+++..........+.+||+.+++|+.+ +++....   
T Consensus       398 vE~YDp~~~~W~~va~m-------~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~---  467 (571)
T KOG4441|consen  398 VECYDPVTNKWTPVAPM-------LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRS---  467 (571)
T ss_pred             EEEecCCCCcccccCCC-------CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccc---
Confidence            99999999999999988       334455668999999999998765443557899999999999988 6665443   


Q ss_pred             CcccceEEEECCeEEEEEcCCCcEEEEEeccCCC-CcceEEEEEecC-CCceeEEEEEE-eCCCEEEEEeCCC-----eE
Q 044435          254 GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPLAFS-SRGDKVLFQKNSK-----DH  325 (378)
Q Consensus       254 ~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~~~~-~~g~~v~~~~~~~-----~~  325 (378)
                        .. .+++.+|+||++++.++.-.+=..+-|+. .+.|+.+..+.. +.    ..++. .++.+.++.+.++     .+
T Consensus       468 --~~-g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs----~~g~~~~~~~ly~vGG~~~~~~l~~v  540 (571)
T KOG4441|consen  468 --GF-GVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRS----AVGVVVLGGKLYAVGGFDGNNNLNTV  540 (571)
T ss_pred             --cc-eEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccc----cccEEEECCEEEEEecccCcccccee
Confidence              23 67889999999999776111111222222 468999866665 33    12222 2444344443332     38


Q ss_pred             EEEECCCCeEEEEe
Q 044435          326 CWYHLDMHRVESFL  339 (378)
Q Consensus       326 ~~ydl~~~~~~~v~  339 (378)
                      -.||+++++|+.+.
T Consensus       541 e~ydp~~d~W~~~~  554 (571)
T KOG4441|consen  541 ECYDPETDTWTEVT  554 (571)
T ss_pred             EEcCCCCCceeeCC
Confidence            99999999999884

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=99.43  E-value=4.6e-12  Score=124.19  Aligned_cols=198  Identities=15%  Similarity=0.124  Sum_probs=137.7

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..+..+||.+++|..+.+++.++..     .+.+.  ..+...|++.... +......+++|++.++.|..+++|     
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~-----~~~~~--~~~~lYv~GG~~~-~~~~l~~ve~YD~~~~~W~~~a~M-----  367 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCR-----VGVAV--LNGKLYVVGGYDS-GSDRLSSVERYDPRTNQWTPVAPM-----  367 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCccccc-----ccEEE--ECCEEEEEccccC-CCcccceEEEecCCCCceeccCCc-----
Confidence            3466889999999999999965431     12221  2233334443321 345567899999999999999888     


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE  275 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~  275 (378)
                        ...+.....+.++|.||.+++.++ ......+..||+.+++|+.+ +++...     ... ..++.+|+||++++..+
T Consensus       368 --~~~R~~~~v~~l~g~iYavGG~dg-~~~l~svE~YDp~~~~W~~va~m~~~r-----~~~-gv~~~~g~iYi~GG~~~  438 (571)
T KOG4441|consen  368 --NTKRSDFGVAVLDGKLYAVGGFDG-EKSLNSVECYDPVTNKWTPVAPMLTRR-----SGH-GVAVLGGKLYIIGGGDG  438 (571)
T ss_pred             --cCccccceeEEECCEEEEEecccc-ccccccEEEecCCCCcccccCCCCcce-----eee-EEEEECCEEEEEcCcCC
Confidence              445556668999999999999873 33446899999999999998 576532     233 67888999999999765


Q ss_pred             -cEEEEEeccCCC-CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEEEe
Q 044435          276 -PWDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 -~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~v~  339 (378)
                       .-.+=..+.|+. .+.|+.+..|.. +.  ...+++. +|.++++++.++     .+-.||+++++|+.+.
T Consensus       439 ~~~~l~sve~YDP~t~~W~~~~~M~~~R~--~~g~a~~-~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~  507 (571)
T KOG4441|consen  439 SSNCLNSVECYDPETNTWTLIAPMNTRRS--GFGVAVL-NGKIYVVGGFDGTSALSSVERYDPETNQWTMVA  507 (571)
T ss_pred             CccccceEEEEcCCCCceeecCCcccccc--cceEEEE-CCEEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence             323333444443 578999998887 55  2224443 555444443332     3889999999999994

>PHA02713 hypothetical protein; Provisional

Probab=99.38  E-value=4.1e-11  Score=117.89  Aligned_cols=195  Identities=10%  Similarity=0.070  Sum_probs=126.3

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      ....+||.+++|..++++|.+...       ++.....+.-.|++... ........++.|++.++.|..+++|   |. 
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-------~~~a~l~~~IYviGG~~-~~~~~~~~v~~Yd~~~n~W~~~~~m---~~-  340 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-------YASAIVDNEIIIAGGYN-FNNPSLNKVYKINIENKIHVELPPM---IK-  340 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-------eEEEEECCEEEEEcCCC-CCCCccceEEEEECCCCeEeeCCCC---cc-
Confidence            467789999999999988865321       11111223333443321 1122346799999999999999888   54 


Q ss_pred             ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435          198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP  276 (378)
Q Consensus       198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~  276 (378)
                         .+.....+.++|+||.+++..+. .....+.+||+.+++|+.+ ++|.....     . ..+..+|+||++++....
T Consensus       341 ---~R~~~~~~~~~g~IYviGG~~~~-~~~~sve~Ydp~~~~W~~~~~mp~~r~~-----~-~~~~~~g~IYviGG~~~~  410 (557)
T PHA02713        341 ---NRCRFSLAVIDDTIYAIGGQNGT-NVERTIECYTMGDDKWKMLPDMPIALSS-----Y-GMCVLDQYIYIIGGRTEH  410 (557)
T ss_pred             ---hhhceeEEEECCEEEEECCcCCC-CCCceEEEEECCCCeEEECCCCCccccc-----c-cEEEECCEEEEEeCCCcc
Confidence               33345678999999999987532 2235799999999999998 66654432     2 567789999999875421


Q ss_pred             ---------------------EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC------CeEEEE
Q 044435          277 ---------------------WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS------KDHCWY  328 (378)
Q Consensus       277 ---------------------l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~------~~~~~y  328 (378)
                                           -.+...+.  ..+.|+.+..++. +.  ...+++. +|.+.++++.+      ..+..|
T Consensus       411 ~~~~~~~~~~~~~~~~~~~~~~~ve~YDP--~td~W~~v~~m~~~r~--~~~~~~~-~~~IYv~GG~~~~~~~~~~ve~Y  485 (557)
T PHA02713        411 IDYTSVHHMNSIDMEEDTHSSNKVIRYDT--VNNIWETLPNFWTGTI--RPGVVSH-KDDIYVVCDIKDEKNVKTCIFRY  485 (557)
T ss_pred             cccccccccccccccccccccceEEEECC--CCCeEeecCCCCcccc--cCcEEEE-CCEEEEEeCCCCCCccceeEEEe
Confidence                                 12333333  1467998877765 33  1122222 56644444322      136799


Q ss_pred             ECCC-CeEEEEe
Q 044435          329 HLDM-HRVESFL  339 (378)
Q Consensus       329 dl~~-~~~~~v~  339 (378)
                      |+++ ++|+.+.
T Consensus       486 dp~~~~~W~~~~  497 (557)
T PHA02713        486 NTNTYNGWELIT  497 (557)
T ss_pred             cCCCCCCeeEcc
Confidence            9999 8999884

>PHA03098 kelch-like protein; Provisional

Probab=99.36  E-value=8.5e-11  Score=116.06  Aligned_cols=195  Identities=11%  Similarity=0.094  Sum_probs=128.1

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      .++.+||.|++|..+|+++.++..  ..  ...   ..+...|++...  .......+++|+..+++|+..+.+   |. 
T Consensus       312 ~v~~yd~~~~~W~~~~~~~~~R~~--~~--~~~---~~~~lyv~GG~~--~~~~~~~v~~yd~~~~~W~~~~~l---p~-  378 (534)
T PHA03098        312 SVVSYDTKTKSWNKVPELIYPRKN--PG--VTV---FNNRIYVIGGIY--NSISLNTVESWKPGESKWREEPPL---IF-  378 (534)
T ss_pred             cEEEEeCCCCeeeECCCCCccccc--ce--EEE---ECCEEEEEeCCC--CCEecceEEEEcCCCCceeeCCCc---Cc-
Confidence            678999999999999988855421  11  111   123344444432  223345799999999999998877   54 


Q ss_pred             ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC-
Q 044435          198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-  275 (378)
Q Consensus       198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-  275 (378)
                       .  ......+.++|++|.+++..........+..||+.+++|+.+ ++|....     .. ..+..+|+|+++++... 
T Consensus       379 -~--r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        379 -P--RYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHY-----GG-CAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             -C--CccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcccc-----Cc-eEEEECCEEEEECCccCC
Confidence             2  334556889999999998543222235799999999999988 5664332     22 45677999999987542 


Q ss_pred             -----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435          276 -----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 -----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~  339 (378)
                           .-.+|..+..  .++|+.+..++. +.  ...+++. +|.++++++..     ..+..||+++++|+.+.
T Consensus       450 ~~~~~~~~v~~yd~~--~~~W~~~~~~~~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  519 (534)
T PHA03098        450 DNIKVYNIVESYNPV--TNKWTELSSLNFPRI--NASLCIF-NNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFC  519 (534)
T ss_pred             CCCcccceEEEecCC--CCceeeCCCCCcccc--cceEEEE-CCEEEEEcCCcCCcccceeEEEeCCCCEEEecC
Confidence                 1236666653  367998765554 32  1122222 56644444322     25999999999999884

>PHA02790 Kelch-like protein; Provisional

Probab=99.29  E-value=2.2e-10  Score=111.00  Aligned_cols=183  Identities=10%  Similarity=0.013  Sum_probs=120.3

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      ....+||.+++|..+|+++.++..  ..  +..   ..+...+++...     ....++.|+..++.|..++++   |. 
T Consensus       288 ~v~~Ydp~~~~W~~~~~m~~~r~~--~~--~v~---~~~~iYviGG~~-----~~~sve~ydp~~n~W~~~~~l---~~-  351 (480)
T PHA02790        288 NAIAVNYISNNWIPIPPMNSPRLY--AS--GVP---ANNKLYVVGGLP-----NPTSVERWFHGDAAWVNMPSL---LK-  351 (480)
T ss_pred             eEEEEECCCCEEEECCCCCchhhc--ce--EEE---ECCEEEEECCcC-----CCCceEEEECCCCeEEECCCC---CC-
Confidence            466789999999999998865421  11  111   234444555432     124589999999999999888   54 


Q ss_pred             ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435          198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP  276 (378)
Q Consensus       198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~  276 (378)
                         .......+.++|+||.+++.....   ..+.+||+.+++|+.+ ++|....     .. ..++.+|+|+++++.   
T Consensus       352 ---~r~~~~~~~~~g~IYviGG~~~~~---~~ve~ydp~~~~W~~~~~m~~~r~-----~~-~~~~~~~~IYv~GG~---  416 (480)
T PHA02790        352 ---PRCNPAVASINNVIYVIGGHSETD---TTTEYLLPNHDQWQFGPSTYYPHY-----KS-CALVFGRRLFLVGRN---  416 (480)
T ss_pred             ---CCcccEEEEECCEEEEecCcCCCC---ccEEEEeCCCCEEEeCCCCCCccc-----cc-eEEEECCEEEEECCc---
Confidence               233456789999999999864321   4689999999999998 5543322     22 567789999999852   


Q ss_pred             EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEE
Q 044435          277 WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESF  338 (378)
Q Consensus       277 l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v  338 (378)
                      .++.  +.  ..+.|+.+..++. +.  ...+++. +|.+.++++.+     ..+..||+++++|+-.
T Consensus       417 ~e~y--dp--~~~~W~~~~~m~~~r~--~~~~~v~-~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~  477 (480)
T PHA02790        417 AEFY--CE--SSNTWTLIDDPIYPRD--NPELIIV-DNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW  477 (480)
T ss_pred             eEEe--cC--CCCcEeEcCCCCCCcc--ccEEEEE-CCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence            2222  21  2367998877665 33  1122232 56644444321     2488999999999854

>PLN02153 epithiospecifier protein

Probab=99.28  E-value=1.9e-09  Score=100.22  Aligned_cols=211  Identities=12%  Similarity=0.084  Sum_probs=122.4

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..++++||.+++|..++++...+..   ...++......+...|++..  ........+++|++.++.|+.++.+   +.
T Consensus        50 ~~~~~yd~~~~~W~~~~~~~~~p~~---~~~~~~~~~~~~~iyv~GG~--~~~~~~~~v~~yd~~t~~W~~~~~~---~~  121 (341)
T PLN02153         50 KDLYVFDFNTHTWSIAPANGDVPRI---SCLGVRMVAVGTKLYIFGGR--DEKREFSDFYSYDTVKNEWTFLTKL---DE  121 (341)
T ss_pred             CcEEEEECCCCEEEEcCccCCCCCC---ccCceEEEEECCEEEEECCC--CCCCccCcEEEEECCCCEEEEeccC---CC
Confidence            3588999999999999876432211   01112111223334444432  2222345799999999999988654   11


Q ss_pred             cc-cccccCCcceeeCCeEEEEeecCCCc-----ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEE
Q 044435          197 SW-ADHSYGGNGAFVNGALHWLANQNQDE-----MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLL  270 (378)
Q Consensus       197 ~~-~~~~~~~~~v~~~G~lyw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~  270 (378)
                      .. ...+.....+..+++||.+++.....     .....+.+||+.+++|..++.+..... .+... .++..+|+|+++
T Consensus       122 ~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~-~r~~~-~~~~~~~~iyv~  199 (341)
T PLN02153        122 EGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFE-KRGGA-GFAVVQGKIWVV  199 (341)
T ss_pred             CCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCC-CCCcc-eEEEECCeEEEE
Confidence            00 11223445688999999999864321     012468999999999998743321111 11222 457789999998


Q ss_pred             EcCC---------C--cEEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC--------------C
Q 044435          271 CKYS---------E--PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS--------------K  323 (378)
Q Consensus       271 ~~~~---------~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~--------------~  323 (378)
                      ....         .  .-.++.++..  ..+|+++..... ...+ .....+. ++.++++....              .
T Consensus       200 GG~~~~~~~gG~~~~~~~~v~~yd~~--~~~W~~~~~~g~~P~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~n  276 (341)
T PLN02153        200 YGFATSILPGGKSDYESNAVQFFDPA--SGKWTEVETTGAKPSARSVFAHAVV-GKYIIIFGGEVWPDLKGHLGPGTLSN  276 (341)
T ss_pred             eccccccccCCccceecCceEEEEcC--CCcEEeccccCCCCCCcceeeeEEE-CCEEEEECcccCCccccccccccccc
Confidence            7532         1  1246666642  367998865432 1111 1222222 44544444321              1


Q ss_pred             eEEEEECCCCeEEEEeE
Q 044435          324 DHCWYHLDMHRVESFLV  340 (378)
Q Consensus       324 ~~~~ydl~~~~~~~v~~  340 (378)
                      .++.||+++++|+.+..
T Consensus       277 ~v~~~d~~~~~W~~~~~  293 (341)
T PLN02153        277 EGYALDTETLVWEKLGE  293 (341)
T ss_pred             cEEEEEcCccEEEeccC
Confidence            58999999999999953

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=99.22  E-value=1.9e-09  Score=100.48  Aligned_cols=216  Identities=15%  Similarity=0.109  Sum_probs=126.3

Q ss_pred             cceEEEee--cCCcEEEEc--CcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEE
Q 044435          107 NGLLALKN--YPKGIILLN--PLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVY  178 (378)
Q Consensus       107 ~GLl~l~~--~~~~~~V~N--P~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vy  178 (378)
                      ++-|.+..  ....+.++|  +.+++|..+|++|...+. ..   ++.  ...+...|++......    ......++.|
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~-~~---~~~--~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Y   90 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRN-QA---VAA--AIDGKLYVFGGIGKANSEGSPQVFDDVYRY   90 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcc-cc---eEE--EECCEEEEEeCCCCCCCCCcceecccEEEE
Confidence            44444432  234577777  477899999988732211 11   111  1234455555432111    0123579999


Q ss_pred             EcCCCcEEecCcccCCCccccccccCCcce-eeCCeEEEEeecCCCc---------------------------------
Q 044435          179 GLKVNLWRRIKNIKNFPYSWADHSYGGNGA-FVNGALHWLANQNQDE---------------------------------  224 (378)
Q Consensus       179 ss~~~~W~~~~~~~~~p~~~~~~~~~~~~v-~~~G~lyw~~~~~~~~---------------------------------  224 (378)
                      ++.+++|+.++.+  .|.  .  ......+ .++|+||.+++.....                                 
T Consensus        91 d~~~~~W~~~~~~--~p~--~--~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (346)
T TIGR03547        91 DPKKNSWQKLDTR--SPV--G--LLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDY  164 (346)
T ss_pred             ECCCCEEecCCCC--CCC--c--ccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHc
Confidence            9999999998632  033  1  2222233 6899999999864210                                 


Q ss_pred             ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC
Q 044435          225 MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE  299 (378)
Q Consensus       225 ~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~  299 (378)
                      .....+.+||+.+++|+.+ ++|....    ... .++..+|+|+++.+...    ..++|..+-......|+.+..++.
T Consensus       165 ~~~~~v~~YDp~t~~W~~~~~~p~~~r----~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~  239 (346)
T TIGR03547       165 FWNKNVLSYDPSTNQWRNLGENPFLGT----AGS-AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPP  239 (346)
T ss_pred             CccceEEEEECCCCceeECccCCCCcC----CCc-eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCC
Confidence            0014799999999999998 6663221    122 56778999999987542    345666553222357998887765


Q ss_pred             -CC--ce--eEEEEEEeCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEe
Q 044435          300 -NG--YR--VIPLAFSSRGDKVLFQKNS----------------------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       300 -~~--~~--~~~~~~~~~g~~v~~~~~~----------------------~~~~~ydl~~~~~~~v~  339 (378)
                       +.  ..  ....++.-+|.++++....                      ..+-+||+++++|+.+.
T Consensus       240 ~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  306 (346)
T TIGR03547       240 PKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVG  306 (346)
T ss_pred             CCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccC
Confidence             32  10  1111223356644444321                      13679999999999884

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PLN02193 nitrile-specifier protein

Probab=99.20  E-value=4.4e-09  Score=101.75  Aligned_cols=208  Identities=10%  Similarity=0.063  Sum_probs=125.0

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      .+.++||.+++|..+|+....+...........+   .+...|++...  .......+++|++.+++|+.+..+   +..
T Consensus       194 ~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~---~~~lYvfGG~~--~~~~~ndv~~yD~~t~~W~~l~~~---~~~  265 (470)
T PLN02193        194 HLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI---GSTLYVFGGRD--ASRQYNGFYSFDTTTNEWKLLTPV---EEG  265 (470)
T ss_pred             cEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE---CCEEEEECCCC--CCCCCccEEEEECCCCEEEEcCcC---CCC
Confidence            4889999999999887543211100111111112   22333433322  222345799999999999998765   210


Q ss_pred             ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435          198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--  275 (378)
Q Consensus       198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--  275 (378)
                       ...+.....+.++++||.+++.... .....+.+||+.+++|+.++.|...... +... .++..+|+++++....+  
T Consensus       266 -P~~R~~h~~~~~~~~iYv~GG~~~~-~~~~~~~~yd~~t~~W~~~~~~~~~~~~-R~~~-~~~~~~gkiyviGG~~g~~  341 (470)
T PLN02193        266 -PTPRSFHSMAADEENVYVFGGVSAT-ARLKTLDSYNIVDKKWFHCSTPGDSFSI-RGGA-GLEVVQGKVWVVYGFNGCE  341 (470)
T ss_pred             -CCCccceEEEEECCEEEEECCCCCC-CCcceEEEEECCCCEEEeCCCCCCCCCC-CCCc-EEEEECCcEEEEECCCCCc
Confidence             1123344567889999999986432 1234689999999999988654322111 2233 56778999999987654  


Q ss_pred             cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------------CeEEEEECCCCeEEEEe
Q 044435          276 PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 ~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------------~~~~~ydl~~~~~~~v~  339 (378)
                      .-++|+++..  ..+|+++..+.. +..+....++.-++.++++....              ..++.||+.+++|+.+.
T Consensus       342 ~~dv~~yD~~--t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~  418 (470)
T PLN02193        342 VDDVHYYDPV--QDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD  418 (470)
T ss_pred             cCceEEEECC--CCEEEEeccCCCCCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence            3567888763  357999876532 11111111222245544444321              13899999999999995

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=99.16  E-value=9.3e-09  Score=94.88  Aligned_cols=197  Identities=12%  Similarity=0.059  Sum_probs=120.5

Q ss_pred             EEEE-cCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE----EecCccc
Q 044435          119 IILL-NPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW----RRIKNIK  192 (378)
Q Consensus       119 ~~V~-NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W----~~~~~~~  192 (378)
                      ++++ +|..+ +|..++++|.++..    ..+..+   .+...|++..  ........++.|+..++.|    +.++.+ 
T Consensus        41 v~~~~~~~~~~~W~~~~~lp~~r~~----~~~~~~---~~~lyviGG~--~~~~~~~~v~~~d~~~~~w~~~~~~~~~l-  110 (323)
T TIGR03548        41 IYIAKDENSNLKWVKDGQLPYEAAY----GASVSV---ENGIYYIGGS--NSSERFSSVYRITLDESKEELICETIGNL-  110 (323)
T ss_pred             eEEEecCCCceeEEEcccCCccccc----eEEEEE---CCEEEEEcCC--CCCCCceeEEEEEEcCCceeeeeeEcCCC-
Confidence            5555 45433 79999888765421    112222   2333344432  2223346789999999887    566666 


Q ss_pred             CCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEE
Q 044435          193 NFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLC  271 (378)
Q Consensus       193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~  271 (378)
                        |.  .  .....++.++|+||.+++.... .....+.+||+.+++|+.+ ++|....    ... .++..+|+|+++.
T Consensus       111 --p~--~--~~~~~~~~~~~~iYv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~~~r----~~~-~~~~~~~~iYv~G  178 (323)
T TIGR03548       111 --PF--T--FENGSACYKDGTLYVGGGNRNG-KPSNKSYLFNLETQEWFELPDFPGEPR----VQP-VCVKLQNELYVFG  178 (323)
T ss_pred             --Cc--C--ccCceEEEECCEEEEEeCcCCC-ccCceEEEEcCCCCCeeECCCCCCCCC----Ccc-eEEEECCEEEEEc
Confidence              54  2  2345578899999999985321 1235799999999999998 5664322    122 4567899999999


Q ss_pred             cCCC--cEEEEEeccCCCCcceEEEEEecC-CCce---eEEEEEEeCCCEEEEEeCC-----------------------
Q 044435          272 KYSE--PWDLWVMKEYGVKDSWSKLFTMNE-NGYR---VIPLAFSSRGDKVLFQKNS-----------------------  322 (378)
Q Consensus       272 ~~~~--~l~iW~l~~~~~~~~W~~~~~i~~-~~~~---~~~~~~~~~g~~v~~~~~~-----------------------  322 (378)
                      +...  ..++|..+..  ..+|+.+..+.. ....   .....+..++.++++...+                       
T Consensus       179 G~~~~~~~~~~~yd~~--~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~  256 (323)
T TIGR03548       179 GGSNIAYTDGYKYSPK--KNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYK  256 (323)
T ss_pred             CCCCccccceEEEecC--CCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhH
Confidence            8654  3456666642  357998765532 2111   1111222245544443322                       


Q ss_pred             --------------CeEEEEECCCCeEEEEe
Q 044435          323 --------------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       323 --------------~~~~~ydl~~~~~~~v~  339 (378)
                                    .++..||+++++|+.+.
T Consensus       257 ~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~  287 (323)
T TIGR03548       257 KEYFLKPPEWYNWNRKILIYNVRTGKWKSIG  287 (323)
T ss_pred             HHHhCCCccccCcCceEEEEECCCCeeeEcc
Confidence                          35999999999999985

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=99.10  E-value=1.1e-08  Score=96.40  Aligned_cols=218  Identities=16%  Similarity=0.069  Sum_probs=126.0

Q ss_pred             eccceEEEee--cCCcEEEEcCc--ccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEE
Q 044435          105 SCNGLLALKN--YPKGIILLNPL--TKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEAT  176 (378)
Q Consensus       105 s~~GLl~l~~--~~~~~~V~NP~--t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~  176 (378)
                      ..++-|.+..  ....+.++|+.  +++|..+|++|..... ...  ...   ..+...|++......    ......++
T Consensus        36 ~~~~~iyv~gG~~~~~~~~~d~~~~~~~W~~l~~~p~~~r~-~~~--~v~---~~~~IYV~GG~~~~~~~~~~~~~~~v~  109 (376)
T PRK14131         36 IDNNTVYVGLGSAGTSWYKLDLNAPSKGWTKIAAFPGGPRE-QAV--AAF---IDGKLYVFGGIGKTNSEGSPQVFDDVY  109 (376)
T ss_pred             EECCEEEEEeCCCCCeEEEEECCCCCCCeEECCcCCCCCcc-cce--EEE---ECCEEEEEcCCCCCCCCCceeEcccEE
Confidence            3455554432  23456777765  5889999987642211 111  111   224455555432100    11235799


Q ss_pred             EEEcCCCcEEecCcccCCCccccccccCCccee-eCCeEEEEeecCCCc-------------------------------
Q 044435          177 VYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF-VNGALHWLANQNQDE-------------------------------  224 (378)
Q Consensus       177 vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~-~~G~lyw~~~~~~~~-------------------------------  224 (378)
                      +|+..++.|+.++.+  .|.  .  ......+. .+|+||.+++.....                               
T Consensus       110 ~YD~~~n~W~~~~~~--~p~--~--~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~  183 (376)
T PRK14131        110 KYDPKTNSWQKLDTR--SPV--G--LAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPE  183 (376)
T ss_pred             EEeCCCCEEEeCCCC--CCC--c--ccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChh
Confidence            999999999998742  133  1  12233344 799999999864210                               


Q ss_pred             --ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEe
Q 044435          225 --MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTM  297 (378)
Q Consensus       225 --~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i  297 (378)
                        .....+.+||+.+++|+.+ ++|....    ... .++..+++|+++.+...    ..++|..+-......|+++..+
T Consensus       184 ~~~~~~~v~~YD~~t~~W~~~~~~p~~~~----~~~-a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~  258 (376)
T PRK14131        184 DYFFNKEVLSYDPSTNQWKNAGESPFLGT----AGS-AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL  258 (376)
T ss_pred             hcCcCceEEEEECCCCeeeECCcCCCCCC----Ccc-eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC
Confidence              0124699999999999988 5664222    122 56777999999997531    5566765432234679998877


Q ss_pred             cC-CC-c----eeEEEEEEeCCCEEEEEeCC-------------------C---eEEEEECCCCeEEEEe
Q 044435          298 NE-NG-Y----RVIPLAFSSRGDKVLFQKNS-------------------K---DHCWYHLDMHRVESFL  339 (378)
Q Consensus       298 ~~-~~-~----~~~~~~~~~~g~~v~~~~~~-------------------~---~~~~ydl~~~~~~~v~  339 (378)
                      +. +. .    .....++.-++.++++....                   .   .+-.||+++++|+.+.
T Consensus       259 p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~  328 (376)
T PRK14131        259 PPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG  328 (376)
T ss_pred             CCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence            65 32 1    01111233356644443321                   0   1457999999999884

>PHA03098 kelch-like protein; Provisional

Probab=99.05  E-value=7.7e-09  Score=102.20  Aligned_cols=212  Identities=9%  Similarity=0.007  Sum_probs=129.4

Q ss_pred             EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccc
Q 044435          119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSW  198 (378)
Q Consensus       119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~  198 (378)
                      +.-+|+.+++|..+++.+...        .++.....+...|++... ........++.|++.++.|..++.+   |.  
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~lyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~~---~~--  331 (534)
T PHA03098        266 YITNYSPLSEINTIIDIHYVY--------CFGSVVLNNVIYFIGGMN-KNNLSVNSVVSYDTKTKSWNKVPEL---IY--  331 (534)
T ss_pred             eeecchhhhhcccccCccccc--------cceEEEECCEEEEECCCc-CCCCeeccEEEEeCCCCeeeECCCC---Cc--
Confidence            455788899999887665321        111111223333333322 1122334789999999999998877   43  


Q ss_pred             cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435          199 ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--  275 (378)
Q Consensus       199 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--  275 (378)
                        .......+.++|.+|.+++.... .....+.+||+.+.+|+.+ ++|....     .. ..+..+|+|+++++...  
T Consensus       332 --~R~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~-----~~-~~~~~~~~iYv~GG~~~~~  402 (534)
T PHA03098        332 --PRKNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRY-----NP-CVVNVNNLIYVIGGISKND  402 (534)
T ss_pred             --ccccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCc-----cc-eEEEECCEEEEECCcCCCC
Confidence              23345678899999999987532 2235799999999999988 6664332     22 56778999999988432  


Q ss_pred             --cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------CeEEEEECCCCeEEEEeEeC--
Q 044435          276 --PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------KDHCWYHLDMHRVESFLVKG--  342 (378)
Q Consensus       276 --~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------~~~~~ydl~~~~~~~v~~~~--  342 (378)
                        .-.++..+..  ..+|.....++. +.  .....+ -++.++++++..        ..+..||+++++|+.+.-..  
T Consensus       403 ~~~~~v~~yd~~--t~~W~~~~~~p~~r~--~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~  477 (534)
T PHA03098        403 ELLKTVECFSLN--TNKWSKGSPLPISHY--GGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP  477 (534)
T ss_pred             cccceEEEEeCC--CCeeeecCCCCcccc--CceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc
Confidence              2355666542  357998776655 33  122222 245533333211        13899999999999985322  


Q ss_pred             C-c-ceEEeeeccccCCC
Q 044435          343 P-S-DVHVCVDTLVSPFA  358 (378)
Q Consensus       343 ~-~-~~~~y~~slv~~~~  358 (378)
                      . . ....+-..|.-+.+
T Consensus       478 r~~~~~~~~~~~iyv~GG  495 (534)
T PHA03098        478 RINASLCIFNNKIYVVGG  495 (534)
T ss_pred             cccceEEEECCEEEEEcC
Confidence            1 1 44444444444443

>PLN02193 nitrile-specifier protein

Probab=99.02  E-value=4.8e-08  Score=94.60  Aligned_cols=206  Identities=11%  Similarity=0.030  Sum_probs=118.4

Q ss_pred             cEEEEcCcc----cceeecCCC---CCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCc
Q 044435          118 GIILLNPLT----KKHRVLPKF---YRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKN  190 (378)
Q Consensus       118 ~~~V~NP~t----~~~~~LP~~---~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~  190 (378)
                      ..++++|.+    .+|..+++.   |.++..  .   +...  ..+...|++............+++|+..+++|+.++.
T Consensus       138 g~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~--h---~~~~--~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~  210 (470)
T PLN02193        138 GAYISLPSTPKLLGKWIKVEQKGEGPGLRCS--H---GIAQ--VGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPA  210 (470)
T ss_pred             EEEEecCCChhhhceEEEcccCCCCCCCccc--c---EEEE--ECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCC
Confidence            467788876    799998764   322211  1   1111  1223333332211111122469999999999998754


Q ss_pred             ccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEE
Q 044435          191 IKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSL  269 (378)
Q Consensus       191 ~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~  269 (378)
                      +...|.   ..+.....+.++++||.+++.... .....+.+||+.+++|+.+ +++...  ..+... .++..+++|++
T Consensus       211 ~g~~P~---~~~~~~~~v~~~~~lYvfGG~~~~-~~~ndv~~yD~~t~~W~~l~~~~~~P--~~R~~h-~~~~~~~~iYv  283 (470)
T PLN02193        211 TGDVPH---LSCLGVRMVSIGSTLYVFGGRDAS-RQYNGFYSFDTTTNEWKLLTPVEEGP--TPRSFH-SMAADEENVYV  283 (470)
T ss_pred             CCCCCC---CcccceEEEEECCEEEEECCCCCC-CCCccEEEEECCCCEEEEcCcCCCCC--CCccce-EEEEECCEEEE
Confidence            311122   112234468899999999986532 1235799999999999988 442111  011223 55667999999


Q ss_pred             EEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEeE
Q 044435          270 LCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       270 ~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~~  340 (378)
                      +.....   .-.+|.++..  ..+|+.+..... ...+ ...+.+. ++.++++...+    ..++.||+++++|+++..
T Consensus       284 ~GG~~~~~~~~~~~~yd~~--t~~W~~~~~~~~~~~~R~~~~~~~~-~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~  360 (470)
T PLN02193        284 FGGVSATARLKTLDSYNIV--DKKWFHCSTPGDSFSIRGGAGLEVV-QGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVET  360 (470)
T ss_pred             ECCCCCCCCcceEEEEECC--CCEEEeCCCCCCCCCCCCCcEEEEE-CCcEEEEECCCCCccCceEEEECCCCEEEEecc
Confidence            988653   2355666542  357987653221 1111 2223333 56644444322    349999999999999954

>PLN02153 epithiospecifier protein

Probab=98.97  E-value=8e-08  Score=89.37  Aligned_cols=202  Identities=9%  Similarity=0.015  Sum_probs=114.1

Q ss_pred             CcccceeecCC----CCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcccc
Q 044435          124 PLTKKHRVLPK----FYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWA  199 (378)
Q Consensus       124 P~t~~~~~LP~----~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~  199 (378)
                      |...+|..|++    .|.++..  .   +...  ..+...|++............+++|+..++.|+..+.+...|.   
T Consensus         4 ~~~~~W~~~~~~~~~~P~pR~~--h---~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~---   73 (341)
T PLN02153          4 TLQGGWIKVEQKGGKGPGPRCS--H---GIAV--VGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPR---   73 (341)
T ss_pred             ccCCeEEEecCCCCCCCCCCCc--c---eEEE--ECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCC---
Confidence            47788999976    3333221  1   1111  1233334333221111123479999999999998865511121   


Q ss_pred             ccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC---
Q 044435          200 DHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE---  275 (378)
Q Consensus       200 ~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---  275 (378)
                      ........+.++++||.+++..... ....+.+||+.+++|+.+ +++.......+... ..+..+++|+++.+...   
T Consensus        74 ~~~~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~-~~~~~~~~iyv~GG~~~~~~  151 (341)
T PLN02153         74 ISCLGVRMVAVGTKLYIFGGRDEKR-EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH-SMASDENHVYVFGGVSKGGL  151 (341)
T ss_pred             CccCceEEEEECCEEEEECCCCCCC-ccCcEEEEECCCCEEEEeccCCCCCCCCCceee-EEEEECCEEEEECCccCCCc
Confidence            1112344688999999999864322 224699999999999987 34211100111222 55778999999988542   


Q ss_pred             -----c-EEEEEeccCCCCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeC-------------CCeEEEEECCCCe
Q 044435          276 -----P-WDLWVMKEYGVKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKN-------------SKDHCWYHLDMHR  334 (378)
Q Consensus       276 -----~-l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~-------------~~~~~~ydl~~~~  334 (378)
                           . -.+|.++..  ..+|..+..+.. ...+ ...+++. +|+++++...             ...+..||+++++
T Consensus       152 ~~~~~~~~~v~~yd~~--~~~W~~l~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~  228 (341)
T PLN02153        152 MKTPERFRTIEAYNIA--DGKWVQLPDPGENFEKRGGAGFAVV-QGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGK  228 (341)
T ss_pred             cCCCcccceEEEEECC--CCeEeeCCCCCCCCCCCCcceEEEE-CCeEEEEeccccccccCCccceecCceEEEEcCCCc
Confidence                 1 246666642  357997654431 1101 1122222 5554444321             1349999999999


Q ss_pred             EEEEeE
Q 044435          335 VESFLV  340 (378)
Q Consensus       335 ~~~v~~  340 (378)
                      |+++..
T Consensus       229 W~~~~~  234 (341)
T PLN02153        229 WTEVET  234 (341)
T ss_pred             EEeccc
Confidence            999964

>PHA02790 Kelch-like protein; Provisional

Probab=98.97  E-value=3.1e-08  Score=96.19  Aligned_cols=162  Identities=10%  Similarity=-0.014  Sum_probs=108.1

Q ss_pred             cceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCC
Q 044435          171 YHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFG  249 (378)
Q Consensus       171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~  249 (378)
                      ....++.|++.++.|..++++   |.    .......+.++|.+|.+++....    ..+..||+.+++|+.+ ++|...
T Consensus       285 ~~~~v~~Ydp~~~~W~~~~~m---~~----~r~~~~~v~~~~~iYviGG~~~~----~sve~ydp~~n~W~~~~~l~~~r  353 (480)
T PHA02790        285 IHNNAIAVNYISNNWIPIPPM---NS----PRLYASGVPANNKLYVVGGLPNP----TSVERWFHGDAAWVNMPSLLKPR  353 (480)
T ss_pred             cCCeEEEEECCCCEEEECCCC---Cc----hhhcceEEEECCEEEEECCcCCC----CceEEEECCCCeEEECCCCCCCC
Confidence            345789999999999999988   43    22334578899999999986432    3689999999999988 666433


Q ss_pred             CCCCCcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeE
Q 044435          250 NEGGGGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDH  325 (378)
Q Consensus       250 ~~~~~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~  325 (378)
                      .     .. ..++.+|+||++++...   .++.+  +.  ..+.|+.+..++. +.  ...++ .-+|. |++.++  .+
T Consensus       354 ~-----~~-~~~~~~g~IYviGG~~~~~~~ve~y--dp--~~~~W~~~~~m~~~r~--~~~~~-~~~~~-IYv~GG--~~  417 (480)
T PHA02790        354 C-----NP-AVASINNVIYVIGGHSETDTTTEYL--LP--NHDQWQFGPSTYYPHY--KSCAL-VFGRR-LFLVGR--NA  417 (480)
T ss_pred             c-----cc-EEEEECCEEEEecCcCCCCccEEEE--eC--CCCEEEeCCCCCCccc--cceEE-EECCE-EEEECC--ce
Confidence            2     22 66888999999998654   34443  22  1357998766665 33  11222 22555 555543  37


Q ss_pred             EEEECCCCeEEEEe-EeC-C-c-ceEEeeeccccCCCC
Q 044435          326 CWYHLDMHRVESFL-VKG-P-S-DVHVCVDTLVSPFAE  359 (378)
Q Consensus       326 ~~ydl~~~~~~~v~-~~~-~-~-~~~~y~~slv~~~~~  359 (378)
                      ..||+++++|+.+. ... . . ...++-..|--+.+.
T Consensus       418 e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~IYviGG~  455 (480)
T PHA02790        418 EFYCESSNTWTLIDDPIYPRDNPELIIVDNKLLLIGGF  455 (480)
T ss_pred             EEecCCCCcEeEcCCCCCCccccEEEEECCEEEEECCc
Confidence            78999999999984 222 2 1 444555555444443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.74  E-value=1.8e-09  Score=68.92  Aligned_cols=41  Identities=20%  Similarity=0.481  Sum_probs=35.3

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN   44 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~   44 (378)
                      ..||+|++.+||..||++++.++++|||+|+.++.++.+-+
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~lW~   42 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSLWR   42 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCHHH
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhhhh
Confidence            46999999999999999999999999999999998875544

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.66  E-value=6.9e-09  Score=66.66  Aligned_cols=44  Identities=36%  Similarity=0.519  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHH
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHL   47 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~   47 (378)
                      ..||+|++.+||.+|+++++.++++|||+|++++.++.+...+.
T Consensus         4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~   47 (48)
T PF00646_consen    4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLWKKII   47 (48)
T ss_dssp             HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHHHHHH
T ss_pred             HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCccHHHh
Confidence            36999999999999999999999999999999999998866543

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=98.65  E-value=5.2e-06  Score=78.25  Aligned_cols=155  Identities=13%  Similarity=0.140  Sum_probs=92.7

Q ss_pred             eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccc--eEEEEEEcCCceeeee-cCCCCC
Q 044435          173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMIN--DLILAFDLNIETFYSM-PMPGFG  249 (378)
Q Consensus       173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~i~~fD~~~~~~~~i-~lP~~~  249 (378)
                      ..+++|+..++.|+.++.+   |.  . .......+.++++||.+++........  .....||+++.+|..+ ++|...
T Consensus       189 ~~v~~YD~~t~~W~~~~~~---p~--~-~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~  262 (376)
T PRK14131        189 KEVLSYDPSTNQWKNAGES---PF--L-GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAP  262 (376)
T ss_pred             ceEEEEECCCCeeeECCcC---CC--C-CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCC
Confidence            4699999999999998877   53  1 122344677899999999854322111  2345677889999988 666532


Q ss_pred             CCC-CC--cccceEEEECCeEEEEEcCCC----------c-------EEEEEeccCCC-CcceEEEEEecC-CCceeEEE
Q 044435          250 NEG-GG--GELSGVYVLKGCLSLLCKYSE----------P-------WDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPL  307 (378)
Q Consensus       250 ~~~-~~--~~~~~l~~~~G~L~~~~~~~~----------~-------l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~  307 (378)
                      ... ..  ... ..+..+|+|+++.+...          .       -.+|..+-|+. .+.|+....++. +.  . ..
T Consensus       263 ~~~~~~~~~~~-~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~--~-~~  338 (376)
T PRK14131        263 GGSSQEGVAGA-FAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLA--Y-GV  338 (376)
T ss_pred             cCCcCCccceE-eceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCcc--c-eE
Confidence            111 00  111 24567999999987531          0       11343332221 357998776665 33  1 22


Q ss_pred             EEEeCCCEEEEEeCC------CeEEEEECCCCeEEE
Q 044435          308 AFSSRGDKVLFQKNS------KDHCWYHLDMHRVES  337 (378)
Q Consensus       308 ~~~~~g~~v~~~~~~------~~~~~ydl~~~~~~~  337 (378)
                      ++.-++.++++....      ..+..|+++++++..
T Consensus       339 av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~~~~~  374 (376)
T PRK14131        339 SVSWNNGVLLIGGETAGGKAVSDVTLLSWDGKKLTV  374 (376)
T ss_pred             EEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCCEEEE
Confidence            333356655555421      148889888877764

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=98.61  E-value=7.5e-06  Score=76.34  Aligned_cols=134  Identities=12%  Similarity=0.168  Sum_probs=80.3

Q ss_pred             eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEE--EcCCceeeee-cCCCCC
Q 044435          173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAF--DLNIETFYSM-PMPGFG  249 (378)
Q Consensus       173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~f--D~~~~~~~~i-~lP~~~  249 (378)
                      ..+++|++.+++|+.++.+   |.  . .......+.++|+||.+++..........+..|  |+++++|+.+ ++|...
T Consensus       168 ~~v~~YDp~t~~W~~~~~~---p~--~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r  241 (346)
T TIGR03547       168 KNVLSYDPSTNQWRNLGEN---PF--L-GTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPK  241 (346)
T ss_pred             ceEEEEECCCCceeECccC---CC--C-cCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCC
Confidence            5799999999999999887   53  1 123344678899999999864322111234445  4567799888 666432


Q ss_pred             CCCC--CcccceEEEECCeEEEEEcCCC----------------------cEEEEEeccCCCCcceEEEEEecC-CCcee
Q 044435          250 NEGG--GGELSGVYVLKGCLSLLCKYSE----------------------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRV  304 (378)
Q Consensus       250 ~~~~--~~~~~~l~~~~G~L~~~~~~~~----------------------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~  304 (378)
                      ....  .... ..+..+|+|+++.....                      ..++|..+    .+.|+.+..++. +.  .
T Consensus       242 ~~~~~~~~~~-~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~----~~~W~~~~~lp~~~~--~  314 (346)
T TIGR03547       242 SSSQEGLAGA-FAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALD----NGKWSKVGKLPQGLA--Y  314 (346)
T ss_pred             CCccccccEE-eeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEec----CCcccccCCCCCCce--e
Confidence            1100  0111 35678999999987531                      23444443    257998877765 32  1


Q ss_pred             EEEEEEeCCCEEEEEe
Q 044435          305 IPLAFSSRGDKVLFQK  320 (378)
Q Consensus       305 ~~~~~~~~g~~v~~~~  320 (378)
                       ..++.-++.++++..
T Consensus       315 -~~~~~~~~~iyv~GG  329 (346)
T TIGR03547       315 -GVSVSWNNGVLLIGG  329 (346)
T ss_pred             -eEEEEcCCEEEEEec
Confidence             223333566455543

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.61  E-value=1.1e-06  Score=74.91  Aligned_cols=227  Identities=13%  Similarity=0.108  Sum_probs=133.7

Q ss_pred             EEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCC--CC-------CCCceeEEeeecCCCCeEEEEEEEecCCCc
Q 044435          101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDL--HG-------DKPSLHGFGYDVGSDDYKLVRIHVFKSPVY  171 (378)
Q Consensus       101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~--~~-------~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~  171 (378)
                      +.-+-|.|-.-=...+-.+.|+|..+-+|.++||-....  ..       ..+......|+.   . ..+.....++...
T Consensus        28 SFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d---~-~yvWGGRND~ega  103 (392)
T KOG4693|consen   28 SFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQD---K-AYVWGGRNDDEGA  103 (392)
T ss_pred             ecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcc---e-EEEEcCccCcccc
Confidence            444556665544445566889999999999999833211  00       011111222221   1 1222223244566


Q ss_pred             ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc-ccceEEEEEEcCCceeeee---cCCC
Q 044435          172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE-MINDLILAFDLNIETFYSM---PMPG  247 (378)
Q Consensus       172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~i~~fD~~~~~~~~i---~lP~  247 (378)
                      +...+.|+.+++.|.+....-.+|.    .+..+++.+++..+|..++..+.- --..-+.+||+.+.+|+.+   ..|+
T Consensus       104 CN~Ly~fDp~t~~W~~p~v~G~vPg----aRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~Pp  179 (392)
T KOG4693|consen  104 CNLLYEFDPETNVWKKPEVEGFVPG----ARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPP  179 (392)
T ss_pred             cceeeeeccccccccccceeeecCC----ccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCc
Confidence            7789999999999998754322233    234556788888999998754321 1113689999999999998   4466


Q ss_pred             CCCCCCCcccceEEEECCeEEEEEcCCC------------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC
Q 044435          248 FGNEGGGGELSGVYVLKGCLSLLCKYSE------------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD  314 (378)
Q Consensus       248 ~~~~~~~~~~~~l~~~~G~L~~~~~~~~------------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~  314 (378)
                      ...+   +.  .-.+.+|.+++..+..+            .-.|-.++-.  .+.|.....-.. +.-+..--.+.-||+
T Consensus       180 rwRD---FH--~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~--T~aW~r~p~~~~~P~GRRSHS~fvYng~  252 (392)
T KOG4693|consen  180 RWRD---FH--TASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLA--TGAWTRTPENTMKPGGRRSHSTFVYNGK  252 (392)
T ss_pred             hhhh---hh--hhhhccceEEEeccccccCCCccchhhhhcceeEEEecc--ccccccCCCCCcCCCcccccceEEEcce
Confidence            5543   22  33556899999887532            1233333321  246876533322 211111122233788


Q ss_pred             EEEEEeCC-------CeEEEEECCCCeEEEEeEeC
Q 044435          315 KVLFQKNS-------KDHCWYHLDMHRVESFLVKG  342 (378)
Q Consensus       315 ~v~~~~~~-------~~~~~ydl~~~~~~~v~~~~  342 (378)
                      +.+|....       ..++.||++|..|.+|+.+|
T Consensus       253 ~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~G  287 (392)
T KOG4693|consen  253 MYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRG  287 (392)
T ss_pred             EEEecccchhhhhhhcceeecccccchheeeeccC
Confidence            66666432       24999999999999998876

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.61  E-value=7.2e-09  Score=64.10  Aligned_cols=39  Identities=51%  Similarity=0.820  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435            6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN   44 (378)
Q Consensus         6 LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~   44 (378)
                      ||+|++.+||.+|+++++.++++|||+|+.++.++.|..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~~   39 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFWF   39 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhhh
Confidence            799999999999999999999999999999999887643

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=98.58  E-value=5e-06  Score=76.75  Aligned_cols=148  Identities=13%  Similarity=0.138  Sum_probs=94.6

Q ss_pred             EEEEEEcCC--CcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee----eee-cCC
Q 044435          174 EATVYGLKV--NLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF----YSM-PMP  246 (378)
Q Consensus       174 ~~~vyss~~--~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~----~~i-~lP  246 (378)
                      .+.+|+...  ..|..+..+   |.  ..  ....++.+++.||.+++..... ....+..||+.+++|    ..+ ++|
T Consensus        40 ~v~~~~~~~~~~~W~~~~~l---p~--~r--~~~~~~~~~~~lyviGG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~~lp  111 (323)
T TIGR03548        40 GIYIAKDENSNLKWVKDGQL---PY--EA--AYGASVSVENGIYYIGGSNSSE-RFSSVYRITLDESKEELICETIGNLP  111 (323)
T ss_pred             eeEEEecCCCceeEEEcccC---Cc--cc--cceEEEEECCEEEEEcCCCCCC-CceeEEEEEEcCCceeeeeeEcCCCC
Confidence            455555222  379998877   54  22  2345688899999999864321 235799999999988    444 555


Q ss_pred             CCCCCCCCcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC
Q 044435          247 GFGNEGGGGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS  322 (378)
Q Consensus       247 ~~~~~~~~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~  322 (378)
                      ....     .. ..++.+|+|+++.....   .-.+|.++..  ..+|+.+..++. ..  ....++.-++.++++...+
T Consensus       112 ~~~~-----~~-~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~~r--~~~~~~~~~~~iYv~GG~~  181 (323)
T TIGR03548       112 FTFE-----NG-SACYKDGTLYVGGGNRNGKPSNKSYLFNLE--TQEWFELPDFPGEPR--VQPVCVKLQNELYVFGGGS  181 (323)
T ss_pred             cCcc-----Cc-eEEEECCEEEEEeCcCCCccCceEEEEcCC--CCCeeECCCCCCCCC--CcceEEEECCEEEEEcCCC
Confidence            4332     22 56778999999988532   3467777753  357998876654 22  1222233356645554332


Q ss_pred             ----CeEEEEECCCCeEEEEe
Q 044435          323 ----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       323 ----~~~~~ydl~~~~~~~v~  339 (378)
                          ..++.||+++++|+.+.
T Consensus       182 ~~~~~~~~~yd~~~~~W~~~~  202 (323)
T TIGR03548       182 NIAYTDGYKYSPKKNQWQKVA  202 (323)
T ss_pred             CccccceEEEecCCCeeEECC
Confidence                13789999999999985

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=98.52  E-value=4.1e-06  Score=75.78  Aligned_cols=214  Identities=15%  Similarity=0.128  Sum_probs=135.5

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC-----CCcceEEEEEEcCCCcEEecCcc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS-----PVYHIEATVYGLKVNLWRRIKNI  191 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-----~~~~~~~~vyss~~~~W~~~~~~  191 (378)
                      ..+|++|--+.+|+.+-.+..+..   .+...+...+..  +-.+.......     -...-..++|+..++.|+.+...
T Consensus        98 ndLy~Yn~k~~eWkk~~spn~P~p---Rsshq~va~~s~--~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~  172 (521)
T KOG1230|consen   98 NDLYSYNTKKNEWKKVVSPNAPPP---RSSHQAVAVPSN--ILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFG  172 (521)
T ss_pred             eeeeEEeccccceeEeccCCCcCC---CccceeEEeccC--eEEEeccccCCcchhhhhhhhheeeeeeccchheeeccC
Confidence            358999999999998843332221   112223333332  22233233222     12344688999999999998754


Q ss_pred             cCCCccccccccCCcceeeCCeEEEEeecCCCc---ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeE
Q 044435          192 KNFPYSWADHSYGGNGAFVNGALHWLANQNQDE---MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCL  267 (378)
Q Consensus       192 ~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L  267 (378)
                         -.  ...+..++.|.....|.-.++.....   ...+-|.+||+++=+|+.+..+...- ..+... .+.+. +|.+
T Consensus       173 ---g~--PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~P-tpRSGc-q~~vtpqg~i  245 (521)
T KOG1230|consen  173 ---GG--PSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGP-TPRSGC-QFSVTPQGGI  245 (521)
T ss_pred             ---CC--CCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCC-CCCCcc-eEEecCCCcE
Confidence               11  33455667888888888777654321   23356999999999999995554321 112233 56666 8998


Q ss_pred             EEEEcCC----------C--cEEEEEeccCC---CCcceEEEEEecC-CCce-eEEEEEEeCCCEEEEEeCC--------
Q 044435          268 SLLCKYS----------E--PWDLWVMKEYG---VKDSWSKLFTMNE-NGYR-VIPLAFSSRGDKVLFQKNS--------  322 (378)
Q Consensus       268 ~~~~~~~----------~--~l~iW~l~~~~---~~~~W~~~~~i~~-~~~~-~~~~~~~~~g~~v~~~~~~--------  322 (378)
                      ++-++..          +  +-++|.|+...   .+..|.++..+.. +..+ ...+++++++..++|..-.        
T Consensus       246 ~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEs  325 (521)
T KOG1230|consen  246 VVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEES  325 (521)
T ss_pred             EEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchh
Confidence            8887652          1  56899998542   2456888877665 3322 3457788888878886411        


Q ss_pred             ------CeEEEEECCCCeEEEEeEeC
Q 044435          323 ------KDHCWYHLDMHRVESFLVKG  342 (378)
Q Consensus       323 ------~~~~~ydl~~~~~~~v~~~~  342 (378)
                            ..++.||+..++|....+++
T Consensus       326 l~g~F~NDLy~fdlt~nrW~~~qlq~  351 (521)
T KOG1230|consen  326 LSGEFFNDLYFFDLTRNRWSEGQLQG  351 (521)
T ss_pred             hhhhhhhhhhheecccchhhHhhhcc
Confidence                  24999999999999886665

>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]

Probab=98.17  E-value=5.1e-05  Score=65.05  Aligned_cols=185  Identities=16%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             cEEEEcCcccceeecCCCCC-CCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          118 GIILLNPLTKKHRVLPKFYR-DLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~-~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      -++-++|.|.+|.+.--... +...+..+++..|     +...|++....+-..-...+++++..|..|+.+... ..|.
T Consensus       106 ~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g-----n~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tk-g~Pp  179 (392)
T KOG4693|consen  106 LLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG-----NQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTK-GDPP  179 (392)
T ss_pred             eeeeeccccccccccceeeecCCccCCceeeEEC-----cEEEEecChHHHHHhhhccceeEeccceeeeehhcc-CCCc
Confidence            46788999999975321110 0001122333333     345555554322233345688889999999998532 1133


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCc--------ccceEEEEEEcCCceeeee----cCCCCCCCCCCcccceEEEEC
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDE--------MINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSGVYVLK  264 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~--------~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~l~~~~  264 (378)
                         ..+..+.++.++|.+|..++.+...        ..-..|++||+.++.|..-    .+|.+..     .. ..-+.+
T Consensus       180 ---rwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR-----SH-S~fvYn  250 (392)
T KOG4693|consen  180 ---RWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR-----SH-STFVYN  250 (392)
T ss_pred             ---hhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc-----cc-ceEEEc
Confidence               2233456788999999999865421        1125799999999999765    2233332     22 567789


Q ss_pred             CeEEEEEcCCC-----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEE
Q 044435          265 GCLSLLCKYSE-----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQ  319 (378)
Q Consensus       265 G~L~~~~~~~~-----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~  319 (378)
                      |++++..+..+     --++|.++.-  ...|+++..-.. +-.+.+-.++..++++++|.
T Consensus       251 g~~Y~FGGYng~ln~HfndLy~FdP~--t~~W~~I~~~Gk~P~aRRRqC~~v~g~kv~LFG  309 (392)
T KOG4693|consen  251 GKMYMFGGYNGTLNVHFNDLYCFDPK--TSMWSVISVRGKYPSARRRQCSVVSGGKVYLFG  309 (392)
T ss_pred             ceEEEecccchhhhhhhcceeecccc--cchheeeeccCCCCCcccceeEEEECCEEEEec
Confidence            99999998876     2378888863  357998875544 33223333444455544444

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.96  E-value=0.0012  Score=64.18  Aligned_cols=207  Identities=14%  Similarity=0.046  Sum_probs=127.3

Q ss_pred             cEEEEcCcccceeecCCCCCCCCC-CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHG-DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~-~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      .++|+|-.++.|.........+.. .....+.++      ++-++.............++.|+..++.|+........| 
T Consensus        89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~------~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P-  161 (482)
T KOG0379|consen   89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG------DKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPP-  161 (482)
T ss_pred             eeEEeecCCcccccccccCCCCCcccceeEEEEC------CeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCC-
Confidence            499999999999776544332211 011111222      333333332222334568999999999999886542212 


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC-C
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS-E  275 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~-~  275 (378)
                         .....+..+.++-++|..++........+.+.+||+.+.+|..+......... +... .++..+++++++.+.. .
T Consensus       162 ---~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p-R~gH-~~~~~~~~~~v~gG~~~~  236 (482)
T KOG0379|consen  162 ---PPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP-RYGH-AMVVVGNKLLVFGGGDDG  236 (482)
T ss_pred             ---CCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC-CCCc-eEEEECCeEEEEeccccC
Confidence               23455667888889999998765443457899999999999998555433322 2333 6777889999988866 3


Q ss_pred             ---cEEEEEeccCCCCcceEEEEEecC-CCc-eeEEEEEEeCCCEEEEEeC--------CCeEEEEECCCCeEEEEeE
Q 044435          276 ---PWDLWVMKEYGVKDSWSKLFTMNE-NGY-RVIPLAFSSRGDKVLFQKN--------SKDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       276 ---~l~iW~l~~~~~~~~W~~~~~i~~-~~~-~~~~~~~~~~g~~v~~~~~--------~~~~~~ydl~~~~~~~v~~  340 (378)
                         -=++|.++=..  ..|.+...... ... ......+  .|+.+++..+        -.+++.||.+++.|.++..
T Consensus       237 ~~~l~D~~~ldl~~--~~W~~~~~~g~~p~~R~~h~~~~--~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~  310 (482)
T KOG0379|consen  237 DVYLNDVHILDLST--WEWKLLPTGGDLPSPRSGHSLTV--SGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVES  310 (482)
T ss_pred             CceecceEeeeccc--ceeeeccccCCCCCCcceeeeEE--ECCEEEEEcCCcccccccccccccccccccceeeeec
Confidence               44889988633  56885543332 111 1333333  2443444322        1248999999999999953

>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]

Probab=97.83  E-value=0.00085  Score=65.24  Aligned_cols=175  Identities=15%  Similarity=0.152  Sum_probs=112.8

Q ss_pred             CCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEE
Q 044435          155 SDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFD  234 (378)
Q Consensus       155 ~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD  234 (378)
                      .+.+.|++............+++|+.++..|.........|    ........+.++..||.+++..........+..||
T Consensus        70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p----~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d  145 (482)
T KOG0379|consen   70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEP----SPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLD  145 (482)
T ss_pred             CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCC----CcccceeEEEECCeEEEEccccCCCCChhheEecc
Confidence            45566666543222222236899999999998765431122    23445667899999999998764333345799999


Q ss_pred             cCCceeeeecC----CCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC-CCce-e
Q 044435          235 LNIETFYSMPM----PGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE-NGYR-V  304 (378)
Q Consensus       235 ~~~~~~~~i~l----P~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~-~  304 (378)
                      +.+.+|..+..    |+...     .. .++..+.+|++.++...    .-++|+++-..  ..|.++.+... +..+ .
T Consensus       146 ~~t~~W~~l~~~~~~P~~r~-----~H-s~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~--~~W~~~~~~g~~P~pR~g  217 (482)
T KOG0379|consen  146 LSTRTWSLLSPTGDPPPPRA-----GH-SATVVGTKLVVFGGIGGTGDSLNDLHIYDLET--STWSELDTQGEAPSPRYG  217 (482)
T ss_pred             CCCCcEEEecCcCCCCCCcc-----cc-eEEEECCEEEEECCccCcccceeeeeeecccc--ccceecccCCCCCCCCCC
Confidence            99999998722    32222     22 56667788998887654    56889998643  45999888776 4322 4


Q ss_pred             EEEEEEeCCCEEEEEeCC-C-----eEEEEECCCCeEEEEeEeC
Q 044435          305 IPLAFSSRGDKVLFQKNS-K-----DHCWYHLDMHRVESFLVKG  342 (378)
Q Consensus       305 ~~~~~~~~g~~v~~~~~~-~-----~~~~ydl~~~~~~~v~~~~  342 (378)
                      ..+++.. ..++++...+ .     .++.+|+.+.+|+.+...+
T Consensus       218 H~~~~~~-~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g  260 (482)
T KOG0379|consen  218 HAMVVVG-NKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGG  260 (482)
T ss_pred             ceEEEEC-CeEEEEeccccCCceecceEeeecccceeeeccccC
Confidence            4455543 3334443332 1     4999999999999775444

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=97.82  E-value=0.00032  Score=62.29  Aligned_cols=40  Identities=20%  Similarity=0.276  Sum_probs=36.4

Q ss_pred             CCC----HHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435            5 KLP----LDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN   44 (378)
Q Consensus         5 ~LP----~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~   44 (378)
                      .||    +++.+.||+.|...+|..|..|||+|+++++++-.-+
T Consensus        77 ~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~WK  120 (499)
T KOG0281|consen   77 ALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGMLWK  120 (499)
T ss_pred             hcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchHHH
Confidence            589    9999999999999999999999999999999875443

>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]

Probab=97.65  E-value=0.0029  Score=57.82  Aligned_cols=168  Identities=15%  Similarity=0.155  Sum_probs=94.6

Q ss_pred             EEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeC-CeEEEEeecCCCc
Q 044435          148 GFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVN-GALHWLANQNQDE  224 (378)
Q Consensus       148 ~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~  224 (378)
                      .+..+|.-+...+++.-.+.+  ..-....+.|+...++|+.+..+   ..  ...+..+..|++- |.+|..++.-...
T Consensus        71 sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~sp---n~--P~pRsshq~va~~s~~l~~fGGEfaSP  145 (521)
T KOG1230|consen   71 SLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSP---NA--PPPRSSHQAVAVPSNILWLFGGEFASP  145 (521)
T ss_pred             ceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccC---CC--cCCCccceeEEeccCeEEEeccccCCc
Confidence            455566655544444432232  22234678899999999998654   11  2223344455555 7666666543322


Q ss_pred             -----ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC
Q 044435          225 -----MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE  299 (378)
Q Consensus       225 -----~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~  299 (378)
                           ....-+..||+.+++|..+.++......  ... +++....+|.+.+                            
T Consensus       146 nq~qF~HYkD~W~fd~~trkweql~~~g~PS~R--SGH-RMvawK~~lilFG----------------------------  194 (521)
T KOG1230|consen  146 NQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPR--SGH-RMVAWKRQLILFG----------------------------  194 (521)
T ss_pred             chhhhhhhhheeeeeeccchheeeccCCCCCCC--ccc-eeEEeeeeEEEEc----------------------------
Confidence                 1224589999999999999887644321  111 3333344433333                            


Q ss_pred             CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEEeEeC--C---c--ceEEe-eeccccCCCCChhh
Q 044435          300 NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESFLVKG--P---S--DVHVC-VDTLVSPFAESNRS  363 (378)
Q Consensus       300 ~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~~--~---~--~~~~y-~~slv~~~~~~~~~  363 (378)
                              |+++ +++++++.    .|++||++|-+|.++...|  +   +  ++.+| ...++--..+.++.
T Consensus       195 --------GFhd~nr~y~YyN----Dvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~  255 (521)
T KOG1230|consen  195 --------GFHDSNRDYIYYN----DVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQR  255 (521)
T ss_pred             --------ceecCCCceEEee----eeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhh
Confidence                    3332 45545544    2777777777777776544  1   1  56666 55666555555544

>PF13964 Kelch_6: Kelch motif

Probab=97.27  E-value=0.00066  Score=43.58  Aligned_cols=44  Identities=18%  Similarity=0.371  Sum_probs=35.4

Q ss_pred             CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCC
Q 044435          204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPG  247 (378)
Q Consensus       204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~  247 (378)
                      ..+.|.++|.||.+++..........+..||+.+++|+.+ ++|.
T Consensus         4 ~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~   48 (50)
T PF13964_consen    4 GHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPT   48 (50)
T ss_pred             cCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCC
Confidence            3457999999999998865333446899999999999998 6663

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.00012  Score=64.29  Aligned_cols=37  Identities=27%  Similarity=0.452  Sum_probs=34.5

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccCChh
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKD   41 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~   41 (378)
                      .||||+++.||+.||.++|.++..|||+|+++.++..
T Consensus       100 slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~  136 (419)
T KOG2120|consen  100 SLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES  136 (419)
T ss_pred             cCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence            4999999999999999999999999999999987654

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=97.10  E-value=0.0015  Score=41.24  Aligned_cols=43  Identities=16%  Similarity=0.356  Sum_probs=35.5

Q ss_pred             CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC
Q 044435          204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP  246 (378)
Q Consensus       204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP  246 (378)
                      ....+.++|.||.+++..........+.+||+.+++|..+ ++|
T Consensus         4 ~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp   47 (47)
T PF01344_consen    4 GHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP   47 (47)
T ss_dssp             SEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred             cCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence            3457899999999999876445567999999999999988 555

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=96.49  E-value=0.0078  Score=38.33  Aligned_cols=41  Identities=10%  Similarity=0.274  Sum_probs=32.7

Q ss_pred             CCcceeeCCeEEEEeec--CCCcccceEEEEEEcCCceeeeec
Q 044435          204 GGNGAFVNGALHWLANQ--NQDEMINDLILAFDLNIETFYSMP  244 (378)
Q Consensus       204 ~~~~v~~~G~lyw~~~~--~~~~~~~~~i~~fD~~~~~~~~i~  244 (378)
                      .+..+.++++||.+++.  .........+..||+++++|+.++
T Consensus         4 ~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~   46 (49)
T PF07646_consen    4 GHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELS   46 (49)
T ss_pred             ceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecC
Confidence            45578999999999988  323344578999999999999883

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=96.28  E-value=0.71  Score=40.56  Aligned_cols=204  Identities=12%  Similarity=0.058  Sum_probs=110.7

Q ss_pred             eeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435          103 IGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK  181 (378)
Q Consensus       103 ~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~  181 (378)
                      ....+|-|.+.+ ....++.++|.+++...+..+.         ..++.++...+.+.|..         .....+++..
T Consensus         7 ~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~---------~~G~~~~~~~g~l~v~~---------~~~~~~~d~~   68 (246)
T PF08450_consen    7 WDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG---------PNGMAFDRPDGRLYVAD---------SGGIAVVDPD   68 (246)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS---------EEEEEEECTTSEEEEEE---------TTCEEEEETT
T ss_pred             EECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC---------CceEEEEccCCEEEEEE---------cCceEEEecC
Confidence            344466776666 5678999999998875543222         22566663334433222         2334666889


Q ss_pred             CCcEEecCcccCCCccc-cccccCCcceeeCCeEEEEeecCCCcccc--eEEEEEEcCCceeeee----cCCCCCCCCCC
Q 044435          182 VNLWRRIKNIKNFPYSW-ADHSYGGNGAFVNGALHWLANQNQDEMIN--DLILAFDLNIETFYSM----PMPGFGNEGGG  254 (378)
Q Consensus       182 ~~~W~~~~~~~~~p~~~-~~~~~~~~~v~~~G~lyw~~~~~~~~~~~--~~i~~fD~~~~~~~~i----~lP~~~~~~~~  254 (378)
                      ++.++.+...   +.+. .......-.+--+|.+|+...........  ..|..+|.. ++...+    ..|.       
T Consensus        69 ~g~~~~~~~~---~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pN-------  137 (246)
T PF08450_consen   69 TGKVTVLADL---PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPN-------  137 (246)
T ss_dssp             TTEEEEEEEE---ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEE-------
T ss_pred             CCcEEEEeec---cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCccccc-------
Confidence            9998887654   2200 11111122344578877765433221111  479999999 554443    2221       


Q ss_pred             cccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEe-cC-CCc-eeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          255 GELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTM-NE-NGY-RVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       255 ~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~-~~~-~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                          -|+.. +| .|+++.....+  ||.++-......+.....+ +. ... ...-+++..+|.+.+-.....++..||
T Consensus       138 ----Gi~~s~dg~~lyv~ds~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~  211 (246)
T PF08450_consen  138 ----GIAFSPDGKTLYVADSFNGR--IWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFD  211 (246)
T ss_dssp             ----EEEEETTSSEEEEEETTTTE--EEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEE
T ss_pred             ----ceEECCcchheeecccccce--eEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEEC
Confidence                34443 45 56766655445  6666543222335544433 33 221 245577777888443344566799999


Q ss_pred             CCCCeEEEEeEe
Q 044435          330 LDMHRVESFLVK  341 (378)
Q Consensus       330 l~~~~~~~v~~~  341 (378)
                      ++.+....|...
T Consensus       212 p~G~~~~~i~~p  223 (246)
T PF08450_consen  212 PDGKLLREIELP  223 (246)
T ss_dssp             TTSCEEEEEE-S
T ss_pred             CCccEEEEEcCC
Confidence            998878888665

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=95.94  E-value=0.99  Score=39.12  Aligned_cols=192  Identities=12%  Similarity=0.021  Sum_probs=95.1

Q ss_pred             ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435          106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--  183 (378)
Q Consensus       106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--  183 (378)
                      .+|.+++......++.+|+.|++...--..+.....   .  ....   .+  +|+....      ...+..++..++  
T Consensus        35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~---~--~~~~---~~--~v~v~~~------~~~l~~~d~~tG~~   98 (238)
T PF13360_consen   35 DGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISG---A--PVVD---GG--RVYVGTS------DGSLYALDAKTGKV   98 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGS---G--EEEE---TT--EEEEEET------TSEEEEEETTTSCE
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccc---e--eeec---cc--ccccccc------eeeeEecccCCcce
Confidence            677777777788899999999986544333322110   0  1111   11  2222221      126777876654  


Q ss_pred             cEE-ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee--eee-cCCCCCCCC---CCcc
Q 044435          184 LWR-RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF--YSM-PMPGFGNEG---GGGE  256 (378)
Q Consensus       184 ~W~-~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~--~~i-~lP~~~~~~---~~~~  256 (378)
                      .|+ .....   +.  ............++.+|.....+       .|.++|+.+++-  ..- ..|......   ....
T Consensus        99 ~W~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~  166 (238)
T PF13360_consen   99 LWSIYLTSS---PP--AGVRSSSSPAVDGDRLYVGTSSG-------KLVALDPKTGKLLWKYPVGEPRGSSPISSFSDIN  166 (238)
T ss_dssp             EEEEEE-SS---CT--CSTB--SEEEEETTEEEEEETCS-------EEEEEETTTTEEEEEEESSTT-SS--EEEETTEE
T ss_pred             eeeeccccc---cc--cccccccCceEecCEEEEEeccC-------cEEEEecCCCcEEEEeecCCCCCCcceeeecccc
Confidence            798 34332   11  11111222333355566554433       799999887655  332 333321110   0011


Q ss_pred             cceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEE-EEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          257 LSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLA-FSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       257 ~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~-~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      . .+...+|.+++.......+.+ -+..  .+..|...  +..      ... ...+|+.+++...++.++++|++|++.
T Consensus       167 ~-~~~~~~~~v~~~~~~g~~~~~-d~~t--g~~~w~~~--~~~------~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~  234 (238)
T PF13360_consen  167 G-SPVISDGRVYVSSGDGRVVAV-DLAT--GEKLWSKP--ISG------IYSLPSVDGGTLYVTSSDGRLYALDLKTGKV  234 (238)
T ss_dssp             E-EEECCTTEEEEECCTSSEEEE-ETTT--TEEEEEEC--SS-------ECECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred             c-ceEEECCEEEEEcCCCeEEEE-ECCC--CCEEEEec--CCC------ccCCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence            1 333346766665544332333 2222  12236322  111      111 233577677777777899999999997


Q ss_pred             EE
Q 044435          336 ES  337 (378)
Q Consensus       336 ~~  337 (378)
                      .+
T Consensus       235 ~W  236 (238)
T PF13360_consen  235 VW  236 (238)
T ss_dssp             EE
T ss_pred             Ee
Confidence            65

...

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=95.86  E-value=0.0027  Score=56.15  Aligned_cols=46  Identities=17%  Similarity=0.245  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHhcCC-----ccccceeeecchhhhcccCChhHHHHHHhh
Q 044435            4 WKLPLDVIIDILIRLP-----GKSLLRFRCISKSFRSLIDSKDFINLHLSR   49 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP-----~~sl~r~r~VcK~W~~li~~p~F~~~~~~~   49 (378)
                      ..||||++.+||.++=     ..+|.++.+|||.|+-...+|.|-+.....
T Consensus       108 ~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~K  158 (366)
T KOG2997|consen  108 SVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLACLK  158 (366)
T ss_pred             hhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHHHHH
Confidence            4699999999998864     589999999999999999999998776553

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=95.80  E-value=0.91  Score=44.78  Aligned_cols=40  Identities=28%  Similarity=0.482  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHH
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFIN   44 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~   44 (378)
                      .||-++...||..|+.+++.++++||+.|+.+..+.....
T Consensus       110 ~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~~~~  149 (537)
T KOG0274|consen  110 LLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDKVWW  149 (537)
T ss_pred             cccchhcccccccCCHHHhhhhhhhcchhhhhhhccchhh
Confidence            5899999999999999999999999999999998655544

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=95.49  E-value=0.025  Score=35.91  Aligned_cols=42  Identities=12%  Similarity=0.287  Sum_probs=25.7

Q ss_pred             Ccceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC
Q 044435          205 GNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP  246 (378)
Q Consensus       205 ~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP  246 (378)
                      +.++.+ ++.+|..++..........+..||+.+++|+.+ ++|
T Consensus         5 h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P   48 (49)
T PF13418_consen    5 HSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMP   48 (49)
T ss_dssp             -EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS-
T ss_pred             EEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCC
Confidence            445666 589999998765333345789999999999998 555

>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []

Probab=95.05  E-value=1.6  Score=38.54  Aligned_cols=126  Identities=15%  Similarity=0.190  Sum_probs=77.4

Q ss_pred             cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCC-------CCcccceEEEECCeEEEEEcCC
Q 044435          203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEG-------GGGELSGVYVLKGCLSLLCKYS  274 (378)
Q Consensus       203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~-------~~~~~~~l~~~~G~L~~~~~~~  274 (378)
                      .....|+.||.+|+.....      ..|+.||+.++... ...||......       ..-.+ .+++.+..|-++-...
T Consensus        70 ~GtG~vVYngslYY~~~~s------~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~i-D~AvDE~GLWvIYat~  142 (250)
T PF02191_consen   70 QGTGHVVYNGSLYYNKYNS------RNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDI-DFAVDENGLWVIYATE  142 (250)
T ss_pred             ccCCeEEECCcEEEEecCC------ceEEEEECcCCcEEEEEECCccccccccceecCCCceE-EEEEcCCCEEEEEecC
Confidence            3455688899999998754      38999999999998 77888754331       11233 6788888888876654


Q ss_pred             C---cEEEEEeccCC--CCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---Ce-EEEEECCCCeEEEEeE
Q 044435          275 E---PWDLWVMKEYG--VKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KD-HCWYHLDMHRVESFLV  340 (378)
Q Consensus       275 ~---~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~-~~~ydl~~~~~~~v~~  340 (378)
                      .   .+.|=.++...  ...+|.--  ++-+..   --++--+|-+..+...+   .+ .++||+.+++-+.+.+
T Consensus       143 ~~~g~ivvskld~~tL~v~~tw~T~--~~k~~~---~naFmvCGvLY~~~s~~~~~~~I~yafDt~t~~~~~~~i  212 (250)
T PF02191_consen  143 DNNGNIVVSKLDPETLSVEQTWNTS--YPKRSA---GNAFMVCGVLYATDSYDTRDTEIFYAFDTYTGKEEDVSI  212 (250)
T ss_pred             CCCCcEEEEeeCcccCceEEEEEec--cCchhh---cceeeEeeEEEEEEECCCCCcEEEEEEECCCCceeceee
Confidence            3   67777777532  23456532  111110   01111134433333332   23 6899999998888765

Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=94.96  E-value=2.2  Score=36.91  Aligned_cols=139  Identities=12%  Similarity=0.037  Sum_probs=76.3

Q ss_pred             EEEEEEcCCC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435          174 EATVYGLKVN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN  250 (378)
Q Consensus       174 ~~~vyss~~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~  250 (378)
                      .+..++..++  .|+.--..       .........+.-+|.+|.....+       .+.++|..+++-..- .++....
T Consensus         4 ~l~~~d~~tG~~~W~~~~~~-------~~~~~~~~~~~~~~~v~~~~~~~-------~l~~~d~~tG~~~W~~~~~~~~~   69 (238)
T PF13360_consen    4 TLSALDPRTGKELWSYDLGP-------GIGGPVATAVPDGGRVYVASGDG-------NLYALDAKTGKVLWRFDLPGPIS   69 (238)
T ss_dssp             EEEEEETTTTEEEEEEECSS-------SCSSEEETEEEETTEEEEEETTS-------EEEEEETTTSEEEEEEECSSCGG
T ss_pred             EEEEEECCCCCEEEEEECCC-------CCCCccceEEEeCCEEEEEcCCC-------EEEEEECCCCCEEEEeecccccc
Confidence            4567777664  68874211       00000111344778888874332       799999866654333 4443322


Q ss_pred             CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEE-EEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEE
Q 044435          251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSK-LFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWY  328 (378)
Q Consensus       251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~-~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~y  328 (378)
                      .       .....+|.+++.....   .++.++-...+..|.. ...-+. ..  .......-.++.+++......++.+
T Consensus        70 ~-------~~~~~~~~v~v~~~~~---~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~l~~~  137 (238)
T PF13360_consen   70 G-------APVVDGGRVYVGTSDG---SLYALDAKTGKVLWSIYLTSSPPAGV--RSSSSPAVDGDRLYVGTSSGKLVAL  137 (238)
T ss_dssp             S-------GEEEETTEEEEEETTS---EEEEEETTTSCEEEEEEE-SSCTCST--B--SEEEEETTEEEEEETCSEEEEE
T ss_pred             c-------eeeeccccccccccee---eeEecccCCcceeeeecccccccccc--ccccCceEecCEEEEEeccCcEEEE
Confidence            1       2356678887777332   5556662223456874 322222 22  1222222236667777767789999


Q ss_pred             ECCCCeEEEE
Q 044435          329 HLDMHRVESF  338 (378)
Q Consensus       329 dl~~~~~~~v  338 (378)
                      |+++++..+-
T Consensus       138 d~~tG~~~w~  147 (238)
T PF13360_consen  138 DPKTGKLLWK  147 (238)
T ss_dssp             ETTTTEEEEE
T ss_pred             ecCCCcEEEE
Confidence            9999987444

...

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=94.93  E-value=0.67  Score=40.54  Aligned_cols=170  Identities=14%  Similarity=0.138  Sum_probs=94.1

Q ss_pred             eEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC----ceeeeecCCCC
Q 044435          173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI----ETFYSMPMPGF  248 (378)
Q Consensus       173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~----~~~~~i~lP~~  248 (378)
                      ....+|+..+++++.+...    .  ..++ ....+.-||.+.-.++...+.   ..+..|++.+    ..|.  ..|..
T Consensus        46 a~s~~yD~~tn~~rpl~v~----t--d~FC-Sgg~~L~dG~ll~tGG~~~G~---~~ir~~~p~~~~~~~~w~--e~~~~  113 (243)
T PF07250_consen   46 AHSVEYDPNTNTFRPLTVQ----T--DTFC-SGGAFLPDGRLLQTGGDNDGN---KAIRIFTPCTSDGTCDWT--ESPND  113 (243)
T ss_pred             EEEEEEecCCCcEEeccCC----C--CCcc-cCcCCCCCCCEEEeCCCCccc---cceEEEecCCCCCCCCce--ECccc
Confidence            4467899999999987543    1  1112 122455688888777664432   4677888765    3443  34433


Q ss_pred             CCCCCCcccceEEE-ECCeEEEEEcCCC-cEEEEEeccCCC-CcceEEEEEec-CCCceeEE-EEEEeCCCEEEEEeCCC
Q 044435          249 GNEGGGGELSGVYV-LKGCLSLLCKYSE-PWDLWVMKEYGV-KDSWSKLFTMN-ENGYRVIP-LAFSSRGDKVLFQKNSK  323 (378)
Q Consensus       249 ~~~~~~~~~~~l~~-~~G~L~~~~~~~~-~l~iW~l~~~~~-~~~W~~~~~i~-~~~~~~~~-~~~~~~g~~v~~~~~~~  323 (378)
                      +. ..++.. .... .||++.++.+... ..+.|=-..... ...|....... ......+| +.+.++|+ ||+.... 
T Consensus       114 m~-~~RWYp-T~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~-lFi~an~-  189 (243)
T PF07250_consen  114 MQ-SGRWYP-TATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGN-LFIFANR-  189 (243)
T ss_pred             cc-CCCccc-cceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCC-EEEEEcC-
Confidence            32 235666 4444 4899999998765 556553322111 11232222111 11112344 55667999 6666554 


Q ss_pred             eEEEEECCCCeE-EEE-eEeCCcceEEeeeccccCCC
Q 044435          324 DHCWYHLDMHRV-ESF-LVKGPSDVHVCVDTLVSPFA  358 (378)
Q Consensus       324 ~~~~ydl~~~~~-~~v-~~~~~~~~~~y~~slv~~~~  358 (378)
                      +...||.+++++ +.+ .+.|..+.+|+.-+-|-++-
T Consensus       190 ~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl  226 (243)
T PF07250_consen  190 GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPL  226 (243)
T ss_pred             CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEEecC
Confidence            478889999976 555 23322255666665554444

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=94.86  E-value=3.2  Score=42.37  Aligned_cols=204  Identities=10%  Similarity=-0.002  Sum_probs=100.1

Q ss_pred             eeccce--EEEeecCCcEEEE--cCcccceeecCCCCCCCCC--CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEE
Q 044435          104 GSCNGL--LALKNYPKGIILL--NPLTKKHRVLPKFYRDLHG--DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATV  177 (378)
Q Consensus       104 ~s~~GL--l~l~~~~~~~~V~--NP~t~~~~~LP~~~~~~~~--~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~v  177 (378)
                      +.-+|+  ||+.....-+++|  |+.++.|..+-+...+...  ..-..++++.+  ++ +-+++-       ....+.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~-~f~~~s-------~~~tv~~   80 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SN-HFLTGS-------EQNTVLR   80 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--cc-ceEEee-------ccceEEE
Confidence            445666  3333344456666  7888888877653322211  11122233332  22 222221       2456788


Q ss_pred             EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435          178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL  257 (378)
Q Consensus       178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~  257 (378)
                      |...++.=..+=     .+  .......-.|..+|+.-..++++.      .|-..++.+..-...-.+.....     .
T Consensus        81 y~fps~~~~~iL-----~R--ftlp~r~~~v~g~g~~iaagsdD~------~vK~~~~~D~s~~~~lrgh~apV-----l  142 (933)
T KOG1274|consen   81 YKFPSGEEDTIL-----AR--FTLPIRDLAVSGSGKMIAAGSDDT------AVKLLNLDDSSQEKVLRGHDAPV-----L  142 (933)
T ss_pred             eeCCCCCcccee-----ee--eeccceEEEEecCCcEEEeecCce------eEEEEeccccchheeecccCCce-----e
Confidence            877665322110     00  011112224445555666665553      45555554433222211211110     0


Q ss_pred             ceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-CceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          258 SGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       258 ~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                       .|.. -+|.+.++...++.+.||.+++.....+|..+..-.- . .....-.+.+++|..+.+..-++.+.+|+.++-.
T Consensus       143 -~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we  221 (933)
T KOG1274|consen  143 -QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWE  221 (933)
T ss_pred             -eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCce
Confidence             2222 3688888888888999999997543455665432221 1 1224445667765445555445558888776655


Q ss_pred             EE
Q 044435          335 VE  336 (378)
Q Consensus       335 ~~  336 (378)
                      ..
T Consensus       222 ~~  223 (933)
T KOG1274|consen  222 LQ  223 (933)
T ss_pred             eh
Confidence            44

>smart00284 OLF Olfactomedin-like domains

Probab=94.66  E-value=2.7  Score=36.95  Aligned_cols=126  Identities=17%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCC-------CCcccceEEEECCeEEEEEcCC
Q 044435          203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEG-------GGGELSGVYVLKGCLSLLCKYS  274 (378)
Q Consensus       203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~-------~~~~~~~l~~~~G~L~~~~~~~  274 (378)
                      .....|+.||.+|+.....      ..|+.||+.+++.... .||...-..       ..-.+ .+++.+..|-++-...
T Consensus        75 ~GtG~VVYngslYY~~~~s------~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdi-DlAvDE~GLWvIYat~  147 (255)
T smart00284       75 QGTGVVVYNGSLYFNKFNS------HDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDI-DLAVDENGLWVIYATE  147 (255)
T ss_pred             ccccEEEECceEEEEecCC------ccEEEEECCCCcEEEEEecCccccccccccccCCCccE-EEEEcCCceEEEEecc
Confidence            3455799999999977654      3799999999999644 677432111       11234 7888888888876543


Q ss_pred             ---CcEEEEEeccCC--CCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCe-EEEEECCCCeEEEEeE
Q 044435          275 ---EPWDLWVMKEYG--VKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKD-HCWYHLDMHRVESFLV  340 (378)
Q Consensus       275 ---~~l~iW~l~~~~--~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~-~~~ydl~~~~~~~v~~  340 (378)
                         +.|.|=+|++..  ...+|.--.  +-+.  . --++--+|.+.+...   .+.+ .++||+.+++-+.+.+
T Consensus       148 ~~~g~ivvSkLnp~tL~ve~tW~T~~--~k~s--a-~naFmvCGvLY~~~s~~~~~~~I~yayDt~t~~~~~~~i  217 (255)
T smart00284      148 QNAGKIVISKLNPATLTIENTWITTY--NKRS--A-SNAFMICGILYVTRSLGSKGEKVFYAYDTNTGKEGHLDI  217 (255)
T ss_pred             CCCCCEEEEeeCcccceEEEEEEcCC--Cccc--c-cccEEEeeEEEEEccCCCCCcEEEEEEECCCCccceeee
Confidence               378888887642  234565421  1111  0 011111243222222   1223 7899999988777754

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=94.64  E-value=2.3  Score=39.57  Aligned_cols=148  Identities=11%  Similarity=0.072  Sum_probs=83.4

Q ss_pred             ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCc---ceEEEEE--
Q 044435          106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVY---HIEATVY--  178 (378)
Q Consensus       106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~---~~~~~vy--  178 (378)
                      .+.-++..+...+.+|+|+.|+....+|.+..+...  ...+.+     .+.  +..+.....  ...   ...+|++  
T Consensus        75 ~gskIv~~d~~~~t~vyDt~t~av~~~P~l~~pk~~--pisv~V-----G~~--LY~m~~~~~~~~~~~~~~~~FE~l~~  145 (342)
T PF07893_consen   75 HGSKIVAVDQSGRTLVYDTDTRAVATGPRLHSPKRC--PISVSV-----GDK--LYAMDRSPFPEPAGRPDFPCFEALVY  145 (342)
T ss_pred             cCCeEEEEcCCCCeEEEECCCCeEeccCCCCCCCcc--eEEEEe-----CCe--EEEeeccCccccccCccceeEEEecc
Confidence            344566666667799999999999989987654321  111122     223  333322111  111   0144444  


Q ss_pred             E--------cCCCcEEecCcccCCCccccccc------cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-
Q 044435          179 G--------LKVNLWRRIKNIKNFPYSWADHS------YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-  243 (378)
Q Consensus       179 s--------s~~~~W~~~~~~~~~p~~~~~~~------~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-  243 (378)
                      +        ..+.+|+.++.+   |+  ....      ..+.+|+ +|.-.|+...+..    ....+||+.+.+|+.. 
T Consensus       146 ~~~~~~~~~~~~w~W~~LP~P---Pf--~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~----~GTysfDt~~~~W~~~G  215 (342)
T PF07893_consen  146 RPPPDDPSPEESWSWRSLPPP---PF--VRDRRYSDYRITSYAVV-DGRTIFVSVNGRR----WGTYSFDTESHEWRKHG  215 (342)
T ss_pred             ccccccccCCCcceEEcCCCC---Cc--cccCCcccceEEEEEEe-cCCeEEEEecCCc----eEEEEEEcCCcceeecc
Confidence            3        223578888777   65  2221      2233455 8887787654311    2589999999999987 


Q ss_pred             --cCCCCCCC--CCCcccceEEEE--C--CeEEEEEcC
Q 044435          244 --PMPGFGNE--GGGGELSGVYVL--K--GCLSLLCKY  273 (378)
Q Consensus       244 --~lP~~~~~--~~~~~~~~l~~~--~--G~L~~~~~~  273 (378)
                        .||-....  ..+... +++.+  +  |.||.+...
T Consensus       216 dW~LPF~G~a~y~~el~~-W~Gls~~~~~~~lca~dv~  252 (342)
T PF07893_consen  216 DWMLPFHGQAEYVPELDL-WFGLSSDGGGGHLCACDVS  252 (342)
T ss_pred             ceecCcCCccEECCCcCe-EEEeccCCCCcEEEEEecc
Confidence              78864332  223344 55554  2  377776654

>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.35  E-value=0.53  Score=42.80  Aligned_cols=229  Identities=14%  Similarity=0.121  Sum_probs=128.6

Q ss_pred             ecCCcEEEEcC--cccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe-cC--CCcceEEEEEEcCCCcEEec
Q 044435          114 NYPKGIILLNP--LTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF-KS--PVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       114 ~~~~~~~V~NP--~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~--~~~~~~~~vyss~~~~W~~~  188 (378)
                      .....+++.|.  -.+.|.++...|...+..... ..     ..+...|....-- ..  ..-...++.|++.+++|..+
T Consensus        55 s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~-a~-----~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl  128 (381)
T COG3055          55 SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVA-AV-----IGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKL  128 (381)
T ss_pred             cCCccceehhhhcCCCCceEcccCCCcccccchh-ee-----eCCeEEEeeccccCCCCCceEeeeeEEecCCCChhhee
Confidence            34556677655  347888887777544321111 00     1122222222110 11  11234688999999999998


Q ss_pred             CcccCCCccccccccCCcceeeCC-eEEEEeecCCC---------------------------------cccceEEEEEE
Q 044435          189 KNIKNFPYSWADHSYGGNGAFVNG-ALHWLANQNQD---------------------------------EMINDLILAFD  234 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~~~G-~lyw~~~~~~~---------------------------------~~~~~~i~~fD  234 (378)
                      +..  .|.  +  .....++.+++ .+|+.++....                                 ......+++||
T Consensus       129 ~t~--sP~--g--l~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~  202 (381)
T COG3055         129 DTR--SPT--G--LVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYD  202 (381)
T ss_pred             ccc--ccc--c--cccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccc
Confidence            754  244  2  23344566666 89988864320                                 11235799999


Q ss_pred             cCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC--C--cEEEEEeccCCCCcceEEEEEecC--CCceeEEE
Q 044435          235 LNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS--E--PWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPL  307 (378)
Q Consensus       235 ~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~--~--~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~  307 (378)
                      +.+++|+.. ..|-.....    . .++.-+++|.++...-  +  +-.+|+.+-.+....|.+....+.  ......+.
T Consensus       203 p~~n~W~~~G~~pf~~~aG----s-a~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvA  277 (381)
T COG3055         203 PSTNQWRNLGENPFYGNAG----S-AVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVA  277 (381)
T ss_pred             cccchhhhcCcCcccCccC----c-ceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccc
Confidence            999999988 466443321    1 2333456788887643  2  667777765555678999876665  22113333


Q ss_pred             EEEe---CCCEEEEEeC------------------------CCeEEEEECCCCeEEEEeEe--C-Cc-ceEEeeeccccC
Q 044435          308 AFSS---RGDKVLFQKN------------------------SKDHCWYHLDMHRVESFLVK--G-PS-DVHVCVDTLVSP  356 (378)
Q Consensus       308 ~~~~---~g~~v~~~~~------------------------~~~~~~ydl~~~~~~~v~~~--~-~~-~~~~y~~slv~~  356 (378)
                      |...   ++++++-...                        ..+++.+|  .+.|+.+..-  + .. -...|-+.+..|
T Consensus       278 Gaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~I  355 (381)
T COG3055         278 GAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLI  355 (381)
T ss_pred             eeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEE
Confidence            3221   4543333210                        11366666  8999988532  2 33 566777777777


Q ss_pred             CCCCh
Q 044435          357 FAESN  361 (378)
Q Consensus       357 ~~~~~  361 (378)
                      .....
T Consensus       356 GGE~~  360 (381)
T COG3055         356 GGETS  360 (381)
T ss_pred             ccccC
Confidence            65443

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.25  E-value=1.9  Score=40.73  Aligned_cols=190  Identities=9%  Similarity=0.051  Sum_probs=106.2

Q ss_pred             cCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcccCCCccccc
Q 044435          123 NPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIKNFPYSWAD  200 (378)
Q Consensus       123 NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~~p~~~~~  200 (378)
                      +|-++-|.+.--++.....  .....+.|.|.. .+|-|.+         ...+.+|++.+..=+. +...        .
T Consensus         8 t~e~~~w~~~~~~~~~ke~--~~vssl~fsp~~P~d~aVt~---------S~rvqly~~~~~~~~k~~srF--------k   68 (487)
T KOG0310|consen    8 TPEIRYWRQETFPPVHKEH--NSVSSLCFSPKHPYDFAVTS---------SVRVQLYSSVTRSVRKTFSRF--------K   68 (487)
T ss_pred             Cccchhhhhhccccccccc--CcceeEecCCCCCCceEEec---------ccEEEEEecchhhhhhhHHhh--------c
Confidence            5666777766444433221  123345555542 2343333         3579999997753222 1111        0


Q ss_pred             cccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-ee---cCCCCCCCCCCcccceEEEECCeEEEEEcCCCc
Q 044435          201 HSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SM---PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEP  276 (378)
Q Consensus       201 ~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i---~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~  276 (378)
                      ....+..+.-||.|...++..+      .|-.||+.+...- .+   ..|.+..        .....++.+.+.+.++..
T Consensus        69 ~~v~s~~fR~DG~LlaaGD~sG------~V~vfD~k~r~iLR~~~ah~apv~~~--------~f~~~d~t~l~s~sDd~v  134 (487)
T KOG0310|consen   69 DVVYSVDFRSDGRLLAAGDESG------HVKVFDMKSRVILRQLYAHQAPVHVT--------KFSPQDNTMLVSGSDDKV  134 (487)
T ss_pred             cceeEEEeecCCeEEEccCCcC------cEEEeccccHHHHHHHhhccCceeEE--------EecccCCeEEEecCCCce
Confidence            0111224556799999887664      7999996653221 11   3332221        223345566555555558


Q ss_pred             EEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEEEEeEeC--CcceEEeeec
Q 044435          277 WDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVESFLVKG--PSDVHVCVDT  352 (378)
Q Consensus       277 l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~~v~~~~--~~~~~~y~~s  352 (378)
                      ..+|.+....     + ...+.. .+ +.+...+.+..+ +++-+..++++-.||.++..-+.+++++  +....+|.+|
T Consensus       135 ~k~~d~s~a~-----v-~~~l~~htD-YVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lps  207 (487)
T KOG0310|consen  135 VKYWDLSTAY-----V-QAELSGHTD-YVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPS  207 (487)
T ss_pred             EEEEEcCCcE-----E-EEEecCCcc-eeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCC
Confidence            8999988631     2 444544 33 366666666444 4555566888999999999744446666  3366666665

>PLN00181 protein SPA1-RELATED; Provisional

Probab=94.14  E-value=8.7  Score=40.25  Aligned_cols=190  Identities=9%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-EEe
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-WRR  187 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W~~  187 (378)
                      .|.....+..+.|||..+++....-  ..+    ......+.+++..+.+-+.+.       ....+.+|+..++. ...
T Consensus       547 ~las~~~Dg~v~lWd~~~~~~~~~~--~~H----~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd~~~~~~~~~  613 (793)
T PLN00181        547 QVASSNFEGVVQVWDVARSQLVTEM--KEH----EKRVWSIDYSSADPTLLASGS-------DDGSVKLWSINQGVSIGT  613 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCeEEEEe--cCC----CCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEECCCCcEEEE
Confidence            3333445667889998876643211  111    223446667665444433331       13467888876542 111


Q ss_pred             cCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEEC
Q 044435          188 IKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLK  264 (378)
Q Consensus       188 ~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~  264 (378)
                      +...           ..-.++.+   +|.....+..+      ..|..||+.+..-....+..+..     .+..+...+
T Consensus       614 ~~~~-----------~~v~~v~~~~~~g~~latgs~d------g~I~iwD~~~~~~~~~~~~~h~~-----~V~~v~f~~  671 (793)
T PLN00181        614 IKTK-----------ANICCVQFPSESGRSLAFGSAD------HKVYYYDLRNPKLPLCTMIGHSK-----TVSYVRFVD  671 (793)
T ss_pred             EecC-----------CCeEEEEEeCCCCCEEEEEeCC------CeEEEEECCCCCccceEecCCCC-----CEEEEEEeC
Confidence            1110           00011211   35555555444      37999998764311111111111     111344457


Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      |...+....++.+.||.+........|..+..+.........+++.++|.+++....++.+..|+....
T Consensus       672 ~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~  740 (793)
T PLN00181        672 SSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP  740 (793)
T ss_pred             CCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence            776666666779999998753222346666665541112445677777886666766778999997655

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=94.06  E-value=5.2  Score=38.00  Aligned_cols=37  Identities=22%  Similarity=0.398  Sum_probs=29.3

Q ss_pred             eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeEe
Q 044435          304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVK  341 (378)
Q Consensus       304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~  341 (378)
                      ..+.....||+.|+|+... .++.||+++.++++++|.
T Consensus       269 YY~R~~nsDGkrIvFq~~G-dIylydP~td~lekldI~  305 (668)
T COG4946         269 YYPRNANSDGKRIVFQNAG-DIYLYDPETDSLEKLDIG  305 (668)
T ss_pred             ccccccCCCCcEEEEecCC-cEEEeCCCcCcceeeecC
Confidence            3344445588889998754 599999999999999886

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=94.04  E-value=1.5  Score=41.86  Aligned_cols=163  Identities=18%  Similarity=0.183  Sum_probs=84.3

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--cEEecCcc--c
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--LWRRIKNI--K  192 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--~W~~~~~~--~  192 (378)
                      .++.|+|-+|++|. +|..-...   ...+++|||........|++.....   ..+.=+.|.+...  .|+++...  .
T Consensus        57 DELHvYNTatnqWf-~PavrGDi---PpgcAA~GfvcdGtrilvFGGMvEY---GkYsNdLYELQasRWeWkrlkp~~p~  129 (830)
T KOG4152|consen   57 DELHVYNTATNQWF-APAVRGDI---PPGCAAFGFVCDGTRILVFGGMVEY---GKYSNDLYELQASRWEWKRLKPKTPK  129 (830)
T ss_pred             hhhhhhccccceee-cchhcCCC---CCchhhcceEecCceEEEEccEeee---ccccchHHHhhhhhhhHhhcCCCCCC
Confidence            46889999999995 55433221   2245577777666665555543311   2344556666654  56665422  0


Q ss_pred             CCCccccccccCCcceeeCCeEEEEeecCCCccc--------c--eEEEEEEcCCc--eeeee----cCCCCCCCCCCcc
Q 044435          193 NFPYSWADHSYGGNGAFVNGALHWLANQNQDEMI--------N--DLILAFDLNIE--TFYSM----PMPGFGNEGGGGE  256 (378)
Q Consensus       193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~--------~--~~i~~fD~~~~--~~~~i----~lP~~~~~~~~~~  256 (378)
                      .=|.  .+.+..++-+.++.+.|..++..++...        .  .+++-+-...+  -|...    .+|...+..    
T Consensus       130 nG~p--PCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESH----  203 (830)
T KOG4152|consen  130 NGPP--PCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESH----  203 (830)
T ss_pred             CCCC--CCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccc----
Confidence            0011  2334455556778899999876543211        1  23333333333  23221    333332221    


Q ss_pred             cceEE--EEC---CeEEEEEcCCC-c-EEEEEeccCCCCcceEEEE
Q 044435          257 LSGVY--VLK---GCLSLLCKYSE-P-WDLWVMKEYGVKDSWSKLF  295 (378)
Q Consensus       257 ~~~l~--~~~---G~L~~~~~~~~-~-l~iW~l~~~~~~~~W~~~~  295 (378)
                      . .+.  +-|   -++++..+..+ + -++|.|+-.  ..+|.+..
T Consensus       204 T-AViY~eKDs~~skmvvyGGM~G~RLgDLW~Ldl~--Tl~W~kp~  246 (830)
T KOG4152|consen  204 T-AVIYTEKDSKKSKMVVYGGMSGCRLGDLWTLDLD--TLTWNKPS  246 (830)
T ss_pred             e-eEEEEeccCCcceEEEEcccccccccceeEEecc--eeeccccc
Confidence            1 111  222   25666655554 4 489999853  35798854

>smart00612 Kelch Kelch domain

Probab=93.55  E-value=0.15  Score=31.44  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             cceEEEEEEcCCCcEEecCcc
Q 044435          171 YHIEATVYGLKVNLWRRIKNI  191 (378)
Q Consensus       171 ~~~~~~vyss~~~~W~~~~~~  191 (378)
                      ....+++|+++++.|+..+.+
T Consensus        13 ~~~~v~~yd~~~~~W~~~~~~   33 (47)
T smart00612       13 RLKSVEVYDPETNKWTPLPSM   33 (47)
T ss_pred             eeeeEEEECCCCCeEccCCCC
Confidence            356799999999999999877

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.39  E-value=7.3  Score=36.92  Aligned_cols=191  Identities=10%  Similarity=0.015  Sum_probs=96.0

Q ss_pred             ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435          106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--  183 (378)
Q Consensus       106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--  183 (378)
                      .+|.|.+......++.+|+.|++.+.--..+..... .+   .+ .    +. +|+...      ....+..++..++  
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~s-sP---~v-~----~~-~v~v~~------~~g~l~ald~~tG~~  182 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALS-RP---VV-S----DG-LVLVHT------SNGMLQALNESDGAV  182 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceec-CC---EE-E----CC-EEEEEC------CCCEEEEEEccCCCE
Confidence            466666665666788899999874432222211100 11   01 1    11 222211      1235777887765  


Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eee-ecCCCCCCCCC---Cccc
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYS-MPMPGFGNEGG---GGEL  257 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~~~---~~~~  257 (378)
                      .|+.-...   |.  ........++..+|.+|+....+       .+.++|..+++  |+. +..|.......   ....
T Consensus       183 ~W~~~~~~---~~--~~~~~~~sP~v~~~~v~~~~~~g-------~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~  250 (394)
T PRK11138        183 KWTVNLDV---PS--LTLRGESAPATAFGGAIVGGDNG-------RVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDT  250 (394)
T ss_pred             eeeecCCC---Cc--ccccCCCCCEEECCEEEEEcCCC-------EEEEEEccCChhhheeccccCCCccchhcccccCC
Confidence            58875433   22  11112345777888888865443       68999988764  442 22232211100   0001


Q ss_pred             ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                       .-...+|.|++.... +.  +..++-...+..|....  . ..  ..+ .+  .++.|++...+++++++|.++++..
T Consensus       251 -sP~v~~~~vy~~~~~-g~--l~ald~~tG~~~W~~~~--~-~~--~~~-~~--~~~~vy~~~~~g~l~ald~~tG~~~  317 (394)
T PRK11138        251 -TPVVVGGVVYALAYN-GN--LVALDLRSGQIVWKREY--G-SV--NDF-AV--DGGRIYLVDQNDRVYALDTRGGVEL  317 (394)
T ss_pred             -CcEEECCEEEEEEcC-Ce--EEEEECCCCCEEEeecC--C-Cc--cCc-EE--ECCEEEEEcCCCeEEEEECCCCcEE
Confidence             223456777765532 22  23333222234575421  1 10  111 12  3555777777778999999988643

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=93.34  E-value=7.4  Score=36.87  Aligned_cols=108  Identities=15%  Similarity=0.204  Sum_probs=56.5

Q ss_pred             CcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEe
Q 044435          205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVM  282 (378)
Q Consensus       205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l  282 (378)
                      ..++..+|.+|.....+       .+.++|..+++  |+. +++..        . .++..+|+|++..... .  +..+
T Consensus       250 ~sP~v~~~~vy~~~~~g-------~l~ald~~tG~~~W~~-~~~~~--------~-~~~~~~~~vy~~~~~g-~--l~al  309 (394)
T PRK11138        250 TTPVVVGGVVYALAYNG-------NLVALDLRSGQIVWKR-EYGSV--------N-DFAVDGGRIYLVDQND-R--VYAL  309 (394)
T ss_pred             CCcEEECCEEEEEEcCC-------eEEEEECCCCCEEEee-cCCCc--------c-CcEEECCEEEEEcCCC-e--EEEE
Confidence            45788899999876543       69999988754  543 22210        0 2234455666554322 1  1122


Q ss_pred             ccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          283 KEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       283 ~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      +-...+..|.... .... ....|+..   ++.|++...++.++++|.++++...
T Consensus       310 d~~tG~~~W~~~~-~~~~-~~~sp~v~---~g~l~v~~~~G~l~~ld~~tG~~~~  359 (394)
T PRK11138        310 DTRGGVELWSQSD-LLHR-LLTAPVLY---NGYLVVGDSEGYLHWINREDGRFVA  359 (394)
T ss_pred             ECCCCcEEEcccc-cCCC-cccCCEEE---CCEEEEEeCCCEEEEEECCCCCEEE
Confidence            2111123353211 0000 11223322   3447777777789999999987544

>PF13964 Kelch_6: Kelch motif

Probab=93.24  E-value=0.24  Score=31.42  Aligned_cols=23  Identities=17%  Similarity=0.242  Sum_probs=20.0

Q ss_pred             CCcEEEEcCcccceeecCCCCCC
Q 044435          116 PKGIILLNPLTKKHRVLPKFYRD  138 (378)
Q Consensus       116 ~~~~~V~NP~t~~~~~LP~~~~~  138 (378)
                      ...+.++||.|++|..+|++|.+
T Consensus        27 ~~~v~~yd~~t~~W~~~~~mp~p   49 (50)
T PF13964_consen   27 SNDVERYDPETNTWEQLPPMPTP   49 (50)
T ss_pred             cccEEEEcCCCCcEEECCCCCCC
Confidence            45689999999999999998854

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=92.79  E-value=8.9  Score=36.26  Aligned_cols=120  Identities=14%  Similarity=0.128  Sum_probs=73.1

Q ss_pred             CCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEE
Q 044435          204 GGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWV  281 (378)
Q Consensus       204 ~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~  281 (378)
                      +....+-+|. .-+.++..      ..+.+||+.+.+.+.+..|.+..... ..  ...++ +|...++.+..+.|.+-.
T Consensus       261 ~~a~f~p~G~~~i~~s~rr------ky~ysyDle~ak~~k~~~~~g~e~~~-~e--~FeVShd~~fia~~G~~G~I~lLh  331 (514)
T KOG2055|consen  261 QKAEFAPNGHSVIFTSGRR------KYLYSYDLETAKVTKLKPPYGVEEKS-ME--RFEVSHDSNFIAIAGNNGHIHLLH  331 (514)
T ss_pred             ceeeecCCCceEEEecccc------eEEEEeeccccccccccCCCCcccch-hh--eeEecCCCCeEEEcccCceEEeeh
Confidence            3334555777 55555544      38999999999999998887765211 11  11222 445444444444444433


Q ss_pred             eccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435          282 MKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       282 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~  339 (378)
                      ...    ..|.--..|..   ...-+.+..+|+.|+..+..+.++++|+++++.....
T Consensus       332 akT----~eli~s~KieG---~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf  382 (514)
T KOG2055|consen  332 AKT----KELITSFKIEG---VVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRF  382 (514)
T ss_pred             hhh----hhhhheeeecc---EEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEE
Confidence            332    23544444432   1344566678887888877888999999999866653

>PLN02772 guanylate kinase

Probab=92.36  E-value=1.1  Score=42.13  Aligned_cols=77  Identities=10%  Similarity=0.053  Sum_probs=53.0

Q ss_pred             cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeec----CCCCCCCCCCcccceEEEECCeEEEEEcCCC-cE
Q 044435          203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMP----MPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-PW  277 (378)
Q Consensus       203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~l  277 (378)
                      ....++.++.++|.+++..........+.+||..+.+|....    .|.....    +. .+..-+++|.++..... .-
T Consensus        26 ~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G----hS-a~v~~~~rilv~~~~~~~~~  100 (398)
T PLN02772         26 NRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG----YS-AVVLNKDRILVIKKGSAPDD  100 (398)
T ss_pred             CcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc----ce-EEEECCceEEEEeCCCCCcc
Confidence            345689999999999976543223468999999999998652    2322221    11 33344789999887665 78


Q ss_pred             EEEEecc
Q 044435          278 DLWVMKE  284 (378)
Q Consensus       278 ~iW~l~~  284 (378)
                      +||.|+-
T Consensus       101 ~~w~l~~  107 (398)
T PLN02772        101 SIWFLEV  107 (398)
T ss_pred             ceEEEEc
Confidence            9999974

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=91.95  E-value=11  Score=35.20  Aligned_cols=202  Identities=10%  Similarity=-0.038  Sum_probs=97.2

Q ss_pred             CCcEEEEcCccccee-ecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE-ecCcccC
Q 044435          116 PKGIILLNPLTKKHR-VLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR-RIKNIKN  193 (378)
Q Consensus       116 ~~~~~V~NP~t~~~~-~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~-~~~~~~~  193 (378)
                      ...+-|+|+.|.+.. .||-++.+..........|++.+... +-  .+.+.   .....+-|.+..+++=- +++.. .
T Consensus        76 ~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk-~l--~V~n~---~p~~~V~VvD~~~~kvv~ei~vp-~  148 (352)
T TIGR02658        76 TDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNK-TL--LFYQF---SPSPAVGVVDLEGKAFVRMMDVP-D  148 (352)
T ss_pred             CCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCC-EE--EEecC---CCCCEEEEEECCCCcEEEEEeCC-C
Confidence            456889999997754 45544433211112223455544432 22  22221   12456778887765332 22211 0


Q ss_pred             CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcC
Q 044435          194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKY  273 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~  273 (378)
                      +..............+.||.+.-+.....+.........||.++.  -...-|...... . .. .-...+|.++++...
T Consensus       149 ~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~--~v~~rP~~~~~d-g-~~-~~vs~eG~V~~id~~  223 (352)
T TIGR02658       149 CYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDE--YLINHPAYSNKS-G-RL-VWPTYTGKIFQIDLS  223 (352)
T ss_pred             CcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCcc--ccccCCceEcCC-C-cE-EEEecCCeEEEEecC
Confidence            111000011122245667777766654433222223344443211  111223111101 1 11 223345899988854


Q ss_pred             CC---cEEEEEeccCCC-CcceEEEEEecCCCceeEEEEEEeCCCEEEEEe----------CCCeEEEEECCCCeEEE
Q 044435          274 SE---PWDLWVMKEYGV-KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK----------NSKDHCWYHLDMHRVES  337 (378)
Q Consensus       274 ~~---~l~iW~l~~~~~-~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~----------~~~~~~~ydl~~~~~~~  337 (378)
                      ..   ....|.+...+. ++.|..        -.+.+++++++|..+|+..          ...++.++|.++++...
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~wrP--------~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~  293 (352)
T TIGR02658       224 SGDAKFLPAIEAFTEAEKADGWRP--------GGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR  293 (352)
T ss_pred             CCcceecceeeeccccccccccCC--------CcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence            43   456676544332 234531        1256789998888777632          12469999999988554

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []

Probab=91.87  E-value=0.38  Score=29.88  Aligned_cols=36  Identities=11%  Similarity=0.164  Sum_probs=26.5

Q ss_pred             CCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcc
Q 044435          155 SDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNI  191 (378)
Q Consensus       155 ~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~  191 (378)
                      .+...|++... ........+++|+..++.|+.++.|
T Consensus        11 ~~~iyv~GG~~-~~~~~~~~v~~yd~~~~~W~~~~~m   46 (47)
T PF01344_consen   11 GNKIYVIGGYD-GNNQPTNSVEVYDPETNTWEELPPM   46 (47)
T ss_dssp             TTEEEEEEEBE-STSSBEEEEEEEETTTTEEEEEEEE
T ss_pred             CCEEEEEeeec-ccCceeeeEEEEeCCCCEEEEcCCC
Confidence            34455555544 2355678999999999999999877

This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=91.77  E-value=3.3  Score=38.73  Aligned_cols=116  Identities=12%  Similarity=0.142  Sum_probs=76.5

Q ss_pred             ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC-cEEEEEeccC
Q 044435          207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-PWDLWVMKEY  285 (378)
Q Consensus       207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-~l~iW~l~~~  285 (378)
                      .++=||-|+-.+..+.      .+-.||+.+.. ..-.+|.+-...    - .+...++.-+++...+. .+.+|-|...
T Consensus       354 ~fHpDgLifgtgt~d~------~vkiwdlks~~-~~a~Fpght~~v----k-~i~FsENGY~Lat~add~~V~lwDLRKl  421 (506)
T KOG0289|consen  354 AFHPDGLIFGTGTPDG------VVKIWDLKSQT-NVAKFPGHTGPV----K-AISFSENGYWLATAADDGSVKLWDLRKL  421 (506)
T ss_pred             eEcCCceEEeccCCCc------eEEEEEcCCcc-ccccCCCCCCce----e-EEEeccCceEEEEEecCCeEEEEEehhh
Confidence            4455777777665543      78999999887 445888754422    1 45666655566665554 7999998864


Q ss_pred             CCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeE
Q 044435          286 GVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       286 ~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~  340 (378)
                      .      .+.++.+ .......+.+...|.++.+...+-.++.|+-+++.|+++..
T Consensus       422 ~------n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~  471 (506)
T KOG0289|consen  422 K------NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKE  471 (506)
T ss_pred             c------ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeeh
Confidence            2      2334444 33234556666678866666555568889999999999953

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=91.47  E-value=7.2  Score=34.49  Aligned_cols=105  Identities=15%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      -+|.+|=-++..+.    ..|..+|+.+++.. ..++|...-.     = .++..+++|+.++-.++..=++-.+     
T Consensus        54 ~~g~LyESTG~yG~----S~l~~~d~~tg~~~~~~~l~~~~Fg-----E-Git~~~d~l~qLTWk~~~~f~yd~~-----  118 (264)
T PF05096_consen   54 DDGTLYESTGLYGQ----SSLRKVDLETGKVLQSVPLPPRYFG-----E-GITILGDKLYQLTWKEGTGFVYDPN-----  118 (264)
T ss_dssp             ETTEEEEEECSTTE----EEEEEEETTTSSEEEEEE-TTT--E-----E-EEEEETTEEEEEESSSSEEEEEETT-----
T ss_pred             CCCEEEEeCCCCCc----EEEEEEECCCCcEEEEEECCccccc-----e-eEEEECCEEEEEEecCCeEEEEccc-----
Confidence            46788876665432    58999999998775 4599875432     1 6788899999999877754444333     


Q ss_pred             cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                       ...++.++.. ..    .-|+..+|+.+++..+..+++..|+++-+
T Consensus       119 -tl~~~~~~~y~~E----GWGLt~dg~~Li~SDGS~~L~~~dP~~f~  160 (264)
T PF05096_consen  119 -TLKKIGTFPYPGE----GWGLTSDGKRLIMSDGSSRLYFLDPETFK  160 (264)
T ss_dssp             -TTEEEEEEE-SSS------EEEECSSCEEEE-SSSEEEEE-TTT-S
T ss_pred             -cceEEEEEecCCc----ceEEEcCCCEEEEECCccceEEECCcccc
Confidence             2445555554 21    23444577768887777789999998754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00612 Kelch Kelch domain

Probab=91.32  E-value=0.72  Score=28.26  Aligned_cols=34  Identities=9%  Similarity=0.120  Sum_probs=23.0

Q ss_pred             EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCC
Q 044435          214 LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGF  248 (378)
Q Consensus       214 lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~  248 (378)
                      ||.+++... ......+.+||+.+++|+.+ ++|..
T Consensus         2 iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~~~~   36 (47)
T smart00612        2 IYVVGGFDG-GQRLKSVEVYDPETNKWTPLPSMPTP   36 (47)
T ss_pred             EEEEeCCCC-CceeeeEEEECCCCCeEccCCCCCCc
Confidence            566665432 12235799999999999987 55543

>PF13415 Kelch_3: Galactose oxidase, central domain

Probab=91.17  E-value=0.57  Score=29.55  Aligned_cols=37  Identities=16%  Similarity=0.278  Sum_probs=27.0

Q ss_pred             CCeEEEEeecCC-CcccceEEEEEEcCCceeeee-cCCC
Q 044435          211 NGALHWLANQNQ-DEMINDLILAFDLNIETFYSM-PMPG  247 (378)
Q Consensus       211 ~G~lyw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~  247 (378)
                      |+++|..++... .......+.+||+.+.+|+.+ ++|.
T Consensus         1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~   39 (49)
T PF13415_consen    1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPP   39 (49)
T ss_pred             CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCC
Confidence            467888887662 223346799999999999999 5554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=91.11  E-value=8.3  Score=36.18  Aligned_cols=109  Identities=12%  Similarity=0.037  Sum_probs=55.5

Q ss_pred             CcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEec
Q 044435          205 GNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMK  283 (378)
Q Consensus       205 ~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~  283 (378)
                      ..++..+|.+|.....+       .+.+||..+++-.+- .++.....       ..+..++.+++... ++.  ++.++
T Consensus        59 ~~p~v~~~~v~v~~~~g-------~v~a~d~~tG~~~W~~~~~~~~~~-------~p~v~~~~v~v~~~-~g~--l~ald  121 (377)
T TIGR03300        59 LQPAVAGGKVYAADADG-------TVVALDAETGKRLWRVDLDERLSG-------GVGADGGLVFVGTE-KGE--VIALD  121 (377)
T ss_pred             cceEEECCEEEEECCCC-------eEEEEEccCCcEeeeecCCCCccc-------ceEEcCCEEEEEcC-CCE--EEEEE
Confidence            34678889888876543       699999876554322 44443221       22333455544332 222  23333


Q ss_pred             cCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          284 EYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       284 ~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      ....+..|....  +. .....|+.   .++.+++...++.++.+|+++++..
T Consensus       122 ~~tG~~~W~~~~--~~-~~~~~p~v---~~~~v~v~~~~g~l~a~d~~tG~~~  168 (377)
T TIGR03300       122 AEDGKELWRAKL--SS-EVLSPPLV---ANGLVVVRTNDGRLTALDAATGERL  168 (377)
T ss_pred             CCCCcEeeeecc--Cc-eeecCCEE---ECCEEEEECCCCeEEEEEcCCCcee
Confidence            211223454321  11 00011221   2445777766777999999887744

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=90.77  E-value=14  Score=34.34  Aligned_cols=172  Identities=12%  Similarity=0.128  Sum_probs=90.5

Q ss_pred             ceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc--EEecCcccCCCccccccccCCcceee--CCe-EEEEee
Q 044435          145 SLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL--WRRIKNIKNFPYSWADHSYGGNGAFV--NGA-LHWLAN  219 (378)
Q Consensus       145 ~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~--W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~  219 (378)
                      ....+.++|..+...|..+       ....+.+|+...+.  ....... .+|.  +.   ..+.+.+  +|+ +|.+.+
T Consensus       145 h~H~v~~~pdg~~v~v~dl-------G~D~v~~~~~~~~~~~l~~~~~~-~~~~--G~---GPRh~~f~pdg~~~Yv~~e  211 (345)
T PF10282_consen  145 HPHQVVFSPDGRFVYVPDL-------GADRVYVYDIDDDTGKLTPVDSI-KVPP--GS---GPRHLAFSPDGKYAYVVNE  211 (345)
T ss_dssp             CEEEEEE-TTSSEEEEEET-------TTTEEEEEEE-TTS-TEEEEEEE-ECST--TS---SEEEEEE-TTSSEEEEEET
T ss_pred             cceeEEECCCCCEEEEEec-------CCCEEEEEEEeCCCceEEEeecc-cccc--CC---CCcEEEEcCCcCEEEEecC
Confidence            4456677775444333221       24568888887654  5443221 0122  11   1112222  554 666655


Q ss_pred             cCCCcccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcce
Q 044435          220 QNQDEMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSW  291 (378)
Q Consensus       220 ~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W  291 (378)
                      ...      .|.+|+..  +..+..+    .+|...... ..-. .+... +| .||+.......+.++.++...  ..-
T Consensus       212 ~s~------~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~-~i~ispdg~~lyvsnr~~~sI~vf~~d~~~--g~l  281 (345)
T PF10282_consen  212 LSN------TVSVFDYDPSDGSLTEIQTISTLPEGFTGE-NAPA-EIAISPDGRFLYVSNRGSNSISVFDLDPAT--GTL  281 (345)
T ss_dssp             TTT------EEEEEEEETTTTEEEEEEEEESCETTSCSS-SSEE-EEEE-TTSSEEEEEECTTTEEEEEEECTTT--TTE
T ss_pred             CCC------cEEEEeecccCCceeEEEEeeecccccccc-CCce-eEEEecCCCEEEEEeccCCEEEEEEEecCC--Cce
Confidence            543      67777766  6666554    455433221 1112 44444 56 456656555689999996532  235


Q ss_pred             EEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEE--ECCCCeEEEEe
Q 044435          292 SKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWY--HLDMHRVESFL  339 (378)
Q Consensus       292 ~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y--dl~~~~~~~v~  339 (378)
                      +.+..++......+-+.+.++|+.+++... ++.+.+|  |.++++++.+.
T Consensus       282 ~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~  332 (345)
T PF10282_consen  282 TLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVG  332 (345)
T ss_dssp             EEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEec
Confidence            555555541112556777889997777654 3345555  77899999885

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=90.47  E-value=6.4  Score=40.73  Aligned_cols=123  Identities=12%  Similarity=-0.004  Sum_probs=66.4

Q ss_pred             cCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC--ceeeee-cCCCCCC-------C--------------------C
Q 044435          203 YGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI--ETFYSM-PMPGFGN-------E--------------------G  252 (378)
Q Consensus       203 ~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~--~~~~~i-~lP~~~~-------~--------------------~  252 (378)
                      ....++.++|.+|.....+       .|.++|..+  +.|+.- ..+....       .                    .
T Consensus       186 ~e~TPlvvgg~lYv~t~~~-------~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~  258 (764)
T TIGR03074       186 FQATPLKVGDTLYLCTPHN-------KVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPAD  258 (764)
T ss_pred             cccCCEEECCEEEEECCCC-------eEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccc
Confidence            3456899999999986654       799999875  456543 3332110       0                    0


Q ss_pred             CCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEE-EecC-CC-ceeEEEEEEeCCCEEEEEeC--------
Q 044435          253 GGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLF-TMNE-NG-YRVIPLAFSSRGDKVLFQKN--------  321 (378)
Q Consensus       253 ~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~-~i~~-~~-~~~~~~~~~~~g~~v~~~~~--------  321 (378)
                      ....+ .++..+|+|+.+....++. +|.....+. ..|..-. ..+. .. .-..|+.+   ++.|++...        
T Consensus       259 ~~~rV-~~~T~Dg~LiALDA~TGk~-~W~fg~~G~-vdl~~~~g~~~~g~~~~ts~P~V~---~g~VIvG~~v~d~~~~~  332 (764)
T TIGR03074       259 CARRI-ILPTSDARLIALDADTGKL-CEDFGNNGT-VDLTAGMGTTPPGYYYPTSPPLVA---GTTVVIGGRVADNYSTD  332 (764)
T ss_pred             cCCEE-EEecCCCeEEEEECCCCCE-EEEecCCCc-eeeecccCcCCCcccccccCCEEE---CCEEEEEeccccccccc
Confidence            01123 4455677777777665543 466654332 2243211 1111 00 01122322   344666532        


Q ss_pred             --CCeEEEEECCCCeEEEE
Q 044435          322 --SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       322 --~~~~~~ydl~~~~~~~v  338 (378)
                        .+.+..||.+|++..+-
T Consensus       333 ~~~G~I~A~Da~TGkl~W~  351 (764)
T TIGR03074       333 EPSGVIRAFDVNTGALVWA  351 (764)
T ss_pred             CCCcEEEEEECCCCcEeeE
Confidence              34599999999997776

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=90.23  E-value=10  Score=35.24  Aligned_cols=117  Identities=13%  Similarity=0.222  Sum_probs=73.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCce--eee---ecCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEec
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIET--FYS---MPMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMK  283 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~---i~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~  283 (378)
                      +|+..|+...+.     +.|..|++..+.  ...   +.+|.+..-   .   .++.. +| .+|++.....++.+..++
T Consensus       154 dg~~v~v~dlG~-----D~v~~~~~~~~~~~l~~~~~~~~~~G~GP---R---h~~f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  154 DGRFVYVPDLGA-----DRVYVYDIDDDTGKLTPVDSIKVPPGSGP---R---HLAFSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             TSSEEEEEETTT-----TEEEEEEE-TTS-TEEEEEEEECSTTSSE---E---EEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             CCCEEEEEecCC-----CEEEEEEEeCCCceEEEeeccccccCCCC---c---EEEEcCCcCEEEEecCCCCcEEEEeec
Confidence            577777776654     478888887665  533   466665432   1   44444 44 567777666688888888


Q ss_pred             cCCCCcceEEEEEecC--CC----ceeEEEEEEeCCCEEEEEeC-CCeEEEEEC--CCCeEEEEeE
Q 044435          284 EYGVKDSWSKLFTMNE--NG----YRVIPLAFSSRGDKVLFQKN-SKDHCWYHL--DMHRVESFLV  340 (378)
Q Consensus       284 ~~~~~~~W~~~~~i~~--~~----~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl--~~~~~~~v~~  340 (378)
                      ..  ...++.+..+..  ..    ....-+.++++|+.+++... ...+.+|++  ++++++.+..
T Consensus       223 ~~--~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  223 PS--DGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             TT--TTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred             cc--CCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence            42  235777777765  21    13556788889997777654 345778876  5678888743

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=89.08  E-value=11  Score=33.50  Aligned_cols=119  Identities=16%  Similarity=0.141  Sum_probs=69.3

Q ss_pred             ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      -+|-|-+.. ..+.+.-.||.++.--.+|.+......    .-.+..|+...    +.+.    ....-.++.|+..+.+
T Consensus       198 pdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~g----sRriwsdpig~----~wit----twg~g~l~rfdPs~~s  265 (353)
T COG4257         198 PDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAG----SRRIWSDPIGR----AWIT----TWGTGSLHRFDPSVTS  265 (353)
T ss_pred             CCCcEEEEeccccceEEcccccCCcceecCCCccccc----ccccccCccCc----EEEe----ccCCceeeEeCccccc
Confidence            344443332 344567789999976677766542221    11334444322    1221    2235578899999999


Q ss_pred             EEecCcccCCCccccccccCCcceeeC-CeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCC
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFVN-GALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFG  249 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~~-G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~  249 (378)
                      |.+-.-+    .   .. ....+.++| .-.-|+.+-+.     ..|..||+++++|+.+++|...
T Consensus       266 W~eypLP----g---s~-arpys~rVD~~grVW~sea~a-----gai~rfdpeta~ftv~p~pr~n  318 (353)
T COG4257         266 WIEYPLP----G---SK-ARPYSMRVDRHGRVWLSEADA-----GAIGRFDPETARFTVLPIPRPN  318 (353)
T ss_pred             ceeeeCC----C---CC-CCcceeeeccCCcEEeecccc-----CceeecCcccceEEEecCCCCC
Confidence            9886432    1   11 111234443 33556655443     4899999999999999888644

>PF07762 DUF1618: Protein of unknown function (DUF1618); InterPro: IPR011676 The proteins of this entry are mainly hypothetical proteins expressed by Oryza sativa

Probab=88.99  E-value=3.4  Score=32.34  Aligned_cols=70  Identities=19%  Similarity=0.180  Sum_probs=49.6

Q ss_pred             EEEEEEcCCc--eeeeecCCCCCCCCC---------CcccceEEEECCeEEEEEcCC---------C-cEEEEEeccC-C
Q 044435          229 LILAFDLNIE--TFYSMPMPGFGNEGG---------GGELSGVYVLKGCLSLLCKYS---------E-PWDLWVMKEY-G  286 (378)
Q Consensus       229 ~i~~fD~~~~--~~~~i~lP~~~~~~~---------~~~~~~l~~~~G~L~~~~~~~---------~-~l~iW~l~~~-~  286 (378)
                      .|+..|+-.+  .++.|+||.......         .... .+++.+|+|-++....         . ++.+|.|... +
T Consensus         7 GIL~CD~~~~~p~l~~vpLP~~~~~~~~~~~~~~~~~~~R-~v~v~~G~ikfV~i~~~~~~~~~~~~~~vt~Wtl~~~~~   85 (131)
T PF07762_consen    7 GILFCDVFDDSPVLRFVPLPPPCPPNRRDDRPRGSPESYR-DVGVSGGKIKFVEIDGYEDDGPPSGGWTVTTWTLKDPEG   85 (131)
T ss_pred             CEEEEECCCCCccEEEEeCCCccccCcccccccCCchhCc-eEEecCCCEEEEEEecccCCCcccCCcEEEEEEeccCCC
Confidence            4788887754  677789987653321         1223 6788899998888642         1 6899999985 2


Q ss_pred             CCcceEEEEEecC
Q 044435          287 VKDSWSKLFTMNE  299 (378)
Q Consensus       287 ~~~~W~~~~~i~~  299 (378)
                      ....|.+-+.++.
T Consensus        86 ~~~~W~~d~~v~~   98 (131)
T PF07762_consen   86 SSWEWKKDCEVDL   98 (131)
T ss_pred             CCCCEEEeEEEEh
Confidence            2467999998886

>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function

Probab=88.03  E-value=17  Score=33.80  Aligned_cols=105  Identities=12%  Similarity=0.095  Sum_probs=59.9

Q ss_pred             EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC----------cEEEEEecc------CCCCcceE
Q 044435          229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----------PWDLWVMKE------YGVKDSWS  292 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----------~l~iW~l~~------~~~~~~W~  292 (378)
                      .++.||.++......  |.... .+..-  .....+|+||++.....          .+++-....      .....+|.
T Consensus        87 ~t~vyDt~t~av~~~--P~l~~-pk~~p--isv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~  161 (342)
T PF07893_consen   87 RTLVYDTDTRAVATG--PRLHS-PKRCP--ISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWR  161 (342)
T ss_pred             CeEEEECCCCeEecc--CCCCC-CCcce--EEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEE
Confidence            599999998887744  33111 11111  33445888999886532          223322221      11123455


Q ss_pred             EEEEecC-CCc-----eeEEEEEEeCCCEEEEEeCCC--eEEEEECCCCeEEEEe
Q 044435          293 KLFTMNE-NGY-----RVIPLAFSSRGDKVLFQKNSK--DHCWYHLDMHRVESFL  339 (378)
Q Consensus       293 ~~~~i~~-~~~-----~~~~~~~~~~g~~v~~~~~~~--~~~~ydl~~~~~~~v~  339 (378)
                      ..-.-+. ...     .+.--+++ +|..|++.....  ..|.||.++.+|++++
T Consensus       162 ~LP~PPf~~~~~~~~~~i~sYavv-~g~~I~vS~~~~~~GTysfDt~~~~W~~~G  215 (342)
T PF07893_consen  162 SLPPPPFVRDRRYSDYRITSYAVV-DGRTIFVSVNGRRWGTYSFDTESHEWRKHG  215 (342)
T ss_pred             cCCCCCccccCCcccceEEEEEEe-cCCeEEEEecCCceEEEEEEcCCcceeecc
Confidence            4222111 111     14455666 788898876654  5999999999999994

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=86.59  E-value=20  Score=31.00  Aligned_cols=26  Identities=23%  Similarity=0.249  Sum_probs=19.1

Q ss_pred             ccceEEEee-cCCcEEEEcCcccceee
Q 044435          106 CNGLLALKN-YPKGIILLNPLTKKHRV  131 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~  131 (378)
                      .+|-.|+.. .++.+-+|||..+...+
T Consensus        27 ~dGnY~ltcGsdrtvrLWNp~rg~lik   53 (307)
T KOG0316|consen   27 VDGNYCLTCGSDRTVRLWNPLRGALIK   53 (307)
T ss_pred             cCCCEEEEcCCCceEEeecccccceee
Confidence            466667765 56678899999887654

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.29  E-value=31  Score=32.80  Aligned_cols=118  Identities=17%  Similarity=0.177  Sum_probs=65.5

Q ss_pred             eeCCeEEEEeecCCCcccceEEEEEEcCCce---eeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC--cEEEEEec
Q 044435          209 FVNGALHWLANQNQDEMINDLILAFDLNIET---FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--PWDLWVMK  283 (378)
Q Consensus       209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--~l~iW~l~  283 (378)
                      ..++.+|+++..+..   ...|++.|+.+..   |..+-.|....    ..+..+...++.|.+....++  +|.++.++
T Consensus       285 ~~~~~~yi~Tn~~a~---~~~l~~~~l~~~~~~~~~~~l~~~~~~----~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HHGDRLYILTNDDAP---NGRLVAVDLADPSPAEWWTVLIPEDED----VSLEDVSLFKDYLVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTEEEEEE-TT-T---T-EEEEEETTSTSGGGEEEEEE--SSS----EEEEEEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ccCCEEEEeeCCCCC---CcEEEEecccccccccceeEEcCCCCc----eeEEEEEEECCEEEEEEEECCccEEEEEECC
Confidence            457888888875432   2689999998765   55443332221    111144556888888887776  56665555


Q ss_pred             cCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEe
Q 044435          284 EYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       284 ~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~  339 (378)
                           ..|.... +++ ...-...+....+++.++|...+    ..++.||+++++.+.++
T Consensus       358 -----~~~~~~~-~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~k  412 (414)
T PF02897_consen  358 -----DGKESRE-IPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLLK  412 (414)
T ss_dssp             ------TEEEEE-EESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEEE
T ss_pred             -----CCcEEee-ecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEEE
Confidence                 1244433 332 22111222222356656666432    24999999999999885

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR01640 F_box_assoc_1 F-box protein interaction domain

Probab=86.01  E-value=22  Score=30.73  Aligned_cols=117  Identities=7%  Similarity=0.050  Sum_probs=63.9

Q ss_pred             eeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCc-ccceEEEE--CC--eEEEEEcC----C-CcEE
Q 044435          209 FVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGG-ELSGVYVL--KG--CLSLLCKY----S-EPWD  278 (378)
Q Consensus       209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~-~~~~l~~~--~G--~L~~~~~~----~-~~l~  278 (378)
                      .+||-+.. ...       ..+...|+.|+++..+|.|......... .. .++..  .+  ++..+...    . ...+
T Consensus         3 sCnGLlc~-~~~-------~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~-~~G~d~~~~~YKVv~~~~~~~~~~~~~~~   73 (230)
T TIGR01640         3 PCDGLICF-SYG-------KRLVVWNPSTGQSRWLPTPKSRRSNKESDTY-FLGYDPIEKQYKVLCFSDRSGNRNQSEHQ   73 (230)
T ss_pred             ccceEEEE-ecC-------CcEEEECCCCCCEEecCCCCCcccccccceE-EEeecccCCcEEEEEEEeecCCCCCccEE
Confidence            46788833 322       2699999999999999766542111111 11 23332  12  22222221    1 1666


Q ss_pred             EEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEE-Ee
Q 044435          279 LWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVES-FL  339 (378)
Q Consensus       279 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~-v~  339 (378)
                      |..+..    .+|..+...+........ ++.-+|.+.++.....     .++.||+++++++. +.
T Consensus        74 Vys~~~----~~Wr~~~~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~  135 (230)
T TIGR01640        74 VYTLGS----NSWRTIECSPPHHPLKSR-GVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP  135 (230)
T ss_pred             EEEeCC----CCccccccCCCCccccCC-eEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee
Confidence            766664    479887632221111222 4444777555554321     59999999999995 54

This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.

>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=85.53  E-value=2.4  Score=40.53  Aligned_cols=77  Identities=14%  Similarity=0.251  Sum_probs=49.5

Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee----cCCCCCCCCCCcccce
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSG  259 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~  259 (378)
                      .||++.... =|.  ...+..+++|.+..-|-..++..++  ..+.+.+||..+++|..-    ++|+.+..       +
T Consensus        18 rWrrV~~~t-GPv--PrpRHGHRAVaikELiviFGGGNEG--iiDELHvYNTatnqWf~PavrGDiPpgcAA-------~   85 (830)
T KOG4152|consen   18 RWRRVQQST-GPV--PRPRHGHRAVAIKELIVIFGGGNEG--IIDELHVYNTATNQWFAPAVRGDIPPGCAA-------F   85 (830)
T ss_pred             ceEEEeccc-CCC--CCccccchheeeeeeEEEecCCccc--chhhhhhhccccceeecchhcCCCCCchhh-------c
Confidence            688875320 022  3345677789998888887766543  235789999999999754    66776653       2


Q ss_pred             EEEECC-eEEEEEc
Q 044435          260 VYVLKG-CLSLLCK  272 (378)
Q Consensus       260 l~~~~G-~L~~~~~  272 (378)
                      -.+++| +|+++.+
T Consensus        86 GfvcdGtrilvFGG   99 (830)
T KOG4152|consen   86 GFVCDGTRILVFGG   99 (830)
T ss_pred             ceEecCceEEEEcc
Confidence            234555 5655553

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=85.19  E-value=33  Score=32.11  Aligned_cols=190  Identities=12%  Similarity=0.037  Sum_probs=90.1

Q ss_pred             ccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--
Q 044435          106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--  183 (378)
Q Consensus       106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--  183 (378)
                      .+|.+.+......++.+|+.|++.+.--..+....    ....+     .++ +|+...      ....+..++..++  
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~----~~p~v-----~~~-~v~v~~------~~g~l~a~d~~tG~~  167 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVL----SPPLV-----ANG-LVVVRT------NDGRLTALDAATGER  167 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceee----cCCEE-----ECC-EEEEEC------CCCeEEEEEcCCCce
Confidence            46666665556677888888877543222221100    00000     112 222211      1234677777664  


Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eee-ecCCCCCCCCC---Cccc
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYS-MPMPGFGNEGG---GGEL  257 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~-i~lP~~~~~~~---~~~~  257 (378)
                      .|+.....   +.  ........++..+|.+|.-...+       .+.++|..+++  |+. +..|.......   ....
T Consensus       168 ~W~~~~~~---~~--~~~~~~~sp~~~~~~v~~~~~~g-------~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~  235 (377)
T TIGR03300       168 LWTYSRVT---PA--LTLRGSASPVIADGGVLVGFAGG-------KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDG  235 (377)
T ss_pred             eeEEccCC---Cc--eeecCCCCCEEECCEEEEECCCC-------EEEEEEccCCCEeeeeccccCCCCCchhhhhccCC
Confidence            68765433   21  11112244677788777544322       79999987654  432 22332111000   0001


Q ss_pred             ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                       .....+|.+++.... +.+..+..+.  .+..|....  .. .  ..|. +  .++.|++...++.++++|.++++.
T Consensus       236 -~p~~~~~~vy~~~~~-g~l~a~d~~t--G~~~W~~~~--~~-~--~~p~-~--~~~~vyv~~~~G~l~~~d~~tG~~  301 (377)
T TIGR03300       236 -DPVVDGGQVYAVSYQ-GRVAALDLRS--GRVLWKRDA--SS-Y--QGPA-V--DDNRLYVTDADGVVVALDRRSGSE  301 (377)
T ss_pred             -ccEEECCEEEEEEcC-CEEEEEECCC--CcEEEeecc--CC-c--cCce-E--eCCEEEEECCCCeEEEEECCCCcE
Confidence             223346666665432 3333333332  234465431  11 0  1122 2  244477776677799999988763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=84.75  E-value=25  Score=31.79  Aligned_cols=111  Identities=16%  Similarity=0.162  Sum_probs=63.2

Q ss_pred             cceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeE---EEEEcCC-CcEEEE
Q 044435          206 NGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCL---SLLCKYS-EPWDLW  280 (378)
Q Consensus       206 ~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L---~~~~~~~-~~l~iW  280 (378)
                      .++.++|..-.-++.++      .|..||+.+..=.-+ --+.+.-.       .|-. .+-+   .++...+ +.+.||
T Consensus        47 tavAVs~~~~aSGssDe------tI~IYDm~k~~qlg~ll~Hagsit-------aL~F-~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   47 TALAVSGPYVASGSSDE------TIHIYDMRKRKQLGILLSHAGSIT-------ALKF-YPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             eEEEecceeEeccCCCC------cEEEEeccchhhhcceeccccceE-------EEEe-cCCcchhheeeecCCCcEEEE
Confidence            36888887666555553      799999987544333 22211100       1111 1222   4455444 489999


Q ss_pred             EeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          281 VMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       281 ~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      ..++      |.++..+.. ... +.-+.+|+.|.+-+-..++..+-..||-+++.-.
T Consensus       113 ~~~~------W~~~~slK~H~~~-Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~  163 (362)
T KOG0294|consen  113 RVGS------WELLKSLKAHKGQ-VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAF  163 (362)
T ss_pred             EcCC------eEEeeeecccccc-cceeEecCCCceEEEEcCCceeeeehhhcCccce
Confidence            8774      988888877 332 6668888888743334444445555555444333

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=84.53  E-value=9.7  Score=34.07  Aligned_cols=75  Identities=16%  Similarity=0.226  Sum_probs=51.6

Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeEeC
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLVKG  342 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~~~  342 (378)
                      .+.|..+...++++++|.++..+.-.   -+....... ..--++..++|.+||...-++.+-.+|+.+++.+.|....
T Consensus        39 ~~~~~~A~SWD~tVR~wevq~~g~~~---~ka~~~~~~-PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd  113 (347)
T KOG0647|consen   39 ADNLLAAGSWDGTVRIWEVQNSGQLV---PKAQQSHDG-PVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHD  113 (347)
T ss_pred             cCceEEecccCCceEEEEEecCCccc---chhhhccCC-CeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecc
Confidence            45566677777899999999864211   111122111 1224566678988999988888999999999999997643

>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B

Probab=84.33  E-value=2.3  Score=26.57  Aligned_cols=34  Identities=12%  Similarity=0.206  Sum_probs=18.4

Q ss_pred             CeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcc
Q 044435          157 DYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNI  191 (378)
Q Consensus       157 ~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~  191 (378)
                      ...|++... ........+++|+..+++|+.++.+
T Consensus        14 ~i~v~GG~~-~~~~~~~d~~~~d~~~~~W~~~~~~   47 (49)
T PF13418_consen   14 SIYVFGGRD-SSGSPLNDLWIFDIETNTWTRLPSM   47 (49)
T ss_dssp             EEEEE--EE-E-TEE---EEEEETTTTEEEE--SS
T ss_pred             eEEEECCCC-CCCcccCCEEEEECCCCEEEECCCC
Confidence            344444433 2224566799999999999999766

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=83.55  E-value=22  Score=31.37  Aligned_cols=85  Identities=14%  Similarity=0.263  Sum_probs=0.0

Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE-eEeC
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF-LVKG  342 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v-~~~~  342 (378)
                      |.+.+.+..+..++||.+..   .++|+.+..++. ..--.+-++..+.|.++.-...+.-+..|--..+.++.+ .++|
T Consensus        27 g~ilAscg~Dk~vriw~~~~---~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEG  103 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSS---GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEG  103 (312)
T ss_pred             ceEEEeecCCceEEEEecCC---CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeec


Q ss_pred             -Cc--ceEEeeec
Q 044435          343 -PS--DVHVCVDT  352 (378)
Q Consensus       343 -~~--~~~~y~~s  352 (378)
                       ++  ....+.+|
T Consensus       104 HEnEVK~Vaws~s  116 (312)
T KOG0645|consen  104 HENEVKCVAWSAS  116 (312)
T ss_pred             cccceeEEEEcCC

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=83.28  E-value=37  Score=31.09  Aligned_cols=143  Identities=12%  Similarity=0.139  Sum_probs=71.6

Q ss_pred             eEEEEEEcC-CCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-e-eeec-CC
Q 044435          173 IEATVYGLK-VNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-F-YSMP-MP  246 (378)
Q Consensus       173 ~~~~vyss~-~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~-~~i~-lP  246 (378)
                      ..+.+|+.. ++++..+...   +.  ..   ....+.+  +|+..+.+....     ..|.+||+.+.. . ..+. ++
T Consensus        57 ~~i~~~~~~~~g~l~~~~~~---~~--~~---~p~~i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~~~  123 (330)
T PRK11028         57 FRVLSYRIADDGALTFAAES---PL--PG---SPTHISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQIIE  123 (330)
T ss_pred             CcEEEEEECCCCceEEeeee---cC--CC---CceEEEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceeecc
Confidence            446667665 4667655443   22  11   1123333  476555554432     378889886421 1 1221 12


Q ss_pred             CCCCCCCCcccceEEE-ECC-eEEEEEcCCCcEEEEEeccCCCCcceEE----EEEecCCCceeEEEEEEeCCCEEEEEe
Q 044435          247 GFGNEGGGGELSGVYV-LKG-CLSLLCKYSEPWDLWVMKEYGVKDSWSK----LFTMNENGYRVIPLAFSSRGDKVLFQK  320 (378)
Q Consensus       247 ~~~~~~~~~~~~~l~~-~~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~----~~~i~~~~~~~~~~~~~~~g~~v~~~~  320 (378)
                      ....   ..   .+.. -+| .|++.....+.+.+|.++..+   .-..    ...++. ....+-+.++++|..++...
T Consensus       124 ~~~~---~~---~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g---~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~  193 (330)
T PRK11028        124 GLEG---CH---SANIDPDNRTLWVPCLKEDRIRLFTLSDDG---HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVN  193 (330)
T ss_pred             CCCc---cc---EeEeCCCCCEEEEeeCCCCEEEEEEECCCC---cccccCCCceecCC-CCCCceEEECCCCCEEEEEe
Confidence            1110   01   2222 255 455555555699999987532   1111    011222 11134467788999776665


Q ss_pred             C-CCeEEEEECC--CCeEEEE
Q 044435          321 N-SKDHCWYHLD--MHRVESF  338 (378)
Q Consensus       321 ~-~~~~~~ydl~--~~~~~~v  338 (378)
                      . +..+.+||++  +++++.+
T Consensus       194 ~~~~~v~v~~~~~~~~~~~~~  214 (330)
T PRK11028        194 ELNSSVDVWQLKDPHGEIECV  214 (330)
T ss_pred             cCCCEEEEEEEeCCCCCEEEE
Confidence            4 5668888886  4555544

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=83.15  E-value=36  Score=31.12  Aligned_cols=118  Identities=11%  Similarity=0.042  Sum_probs=64.1

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEE-ECCe-EEEEEcCCCcEEEEEe
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYV-LKGC-LSLLCKYSEPWDLWVM  282 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~-~~G~-L~~~~~~~~~l~iW~l  282 (378)
                      +|...+......     ..|.+||+.  ++++..+    .+|...... .+.. .+.. -+|+ |++.......+.+|.+
T Consensus       185 dg~~lyv~~~~~-----~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~~-~i~~~pdg~~lyv~~~~~~~I~v~~i  257 (330)
T PRK11028        185 NQQYAYCVNELN-----SSVDVWQLKDPHGEIECVQTLDMMPADFSDT-RWAA-DIHITPDGRHLYACDRTASLISVFSV  257 (330)
T ss_pred             CCCEEEEEecCC-----CEEEEEEEeCCCCCEEEEEEEecCCCcCCCC-ccce-eEEECCCCCEEEEecCCCCeEEEEEE
Confidence            555544444322     378888876  3444333    234332111 1111 2222 2554 5554333458999988


Q ss_pred             ccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEE--ECCCCeEEEEe
Q 044435          283 KEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWY--HLDMHRVESFL  339 (378)
Q Consensus       283 ~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y--dl~~~~~~~v~  339 (378)
                      +..+  ..++.+..++. ..  .+-+.+.++|+.++.... ++.+.+|  |..++.++.++
T Consensus       258 ~~~~--~~~~~~~~~~~~~~--p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~  314 (330)
T PRK11028        258 SEDG--SVLSFEGHQPTETQ--PRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG  314 (330)
T ss_pred             eCCC--CeEEEeEEEecccc--CCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence            7643  34666666664 32  334677788987776653 4446666  55677787774

>cd01206 Homer Homer type EVH1 domain

Probab=81.74  E-value=3.2  Score=31.00  Aligned_cols=40  Identities=18%  Similarity=0.344  Sum_probs=29.8

Q ss_pred             CcEEEEcCccc-ceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEE
Q 044435          117 KGIILLNPLTK-KHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIH  164 (378)
Q Consensus       117 ~~~~V~NP~t~-~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~  164 (378)
                      ..++++||.|+ .|.  |..+      ....+.+-+|+..+.|+||.+.
T Consensus        11 A~V~~yd~~tKk~Wv--Ps~~------~~~~V~~y~~~~~ntfRIi~~~   51 (111)
T cd01206          11 AHVFQIDPKTKKNWI--PASK------HAVTVSYFYDSTRNVYRIISVG   51 (111)
T ss_pred             eEEEEECCCCcceeE--eCCC------CceeEEEEecCCCcEEEEEEec
Confidence            35789999996 775  3333      2246688899999999999963

Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=81.71  E-value=49  Score=31.46  Aligned_cols=105  Identities=15%  Similarity=0.096  Sum_probs=57.4

Q ss_pred             ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCC------CCcccceEEEECC-eEEEEEcCCCcEE
Q 044435          207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEG------GGGELSGVYVLKG-CLSLLCKYSEPWD  278 (378)
Q Consensus       207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~------~~~~~~~l~~~~G-~L~~~~~~~~~l~  278 (378)
                      +|++=..-|++.+.+.+     .|--.++-+.+--.+ ++|.+....      ..+.. .|+++.| -|.+....++.++
T Consensus       332 cv~~In~~HfvsGSdnG-----~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL~asGS~~G~vr  405 (479)
T KOG0299|consen  332 CVAFINDEHFVSGSDNG-----SIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDLLASGSWSGCVR  405 (479)
T ss_pred             eEEEecccceeeccCCc-----eEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCceEEecCCCCceE
Confidence            34443444555555442     455555554443322 333332211      12444 6778766 5666666777999


Q ss_pred             EEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC
Q 044435          279 LWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN  321 (378)
Q Consensus       279 iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~  321 (378)
                      +|+..+.-  ..=..++.++. .+  +.-+++..+|..|+...+
T Consensus       406 LW~i~~g~--r~i~~l~~ls~~Gf--VNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  406 LWKIEDGL--RAINLLYSLSLVGF--VNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             EEEecCCc--cccceeeecccccE--EEEEEEccCCCEEEEecc
Confidence            99998732  23444555554 22  556677778886666543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=81.70  E-value=43  Score=30.77  Aligned_cols=117  Identities=12%  Similarity=0.116  Sum_probs=74.6

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCCCcccceEEE-ECCeEEEEEc-CCCcEEEEEeccC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGGGGELSGVYV-LKGCLSLLCK-YSEPWDLWVMKEY  285 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~-~~~~l~iW~l~~~  285 (378)
                      +|.+-|....+.     +.|..||++.+.....   .++++...   .   .|+. -+|+++.+.. -..++.+|..+..
T Consensus       155 ~~~~l~v~DLG~-----Dri~~y~~~dg~L~~~~~~~v~~G~GP---R---Hi~FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         155 DGRYLVVPDLGT-----DRIFLYDLDDGKLTPADPAEVKPGAGP---R---HIVFHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             CCCEEEEeecCC-----ceEEEEEcccCccccccccccCCCCCc---c---eEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            577777777665     5799999887666544   44444332   1   3444 3677755554 4459999999875


Q ss_pred             CCCcceEEEEEecC-C-C----ceeEEEEEEeCCCEEEEEeCCC-e--EEEEECCCCeEEEEeE
Q 044435          286 GVKDSWSKLFTMNE-N-G----YRVIPLAFSSRGDKVLFQKNSK-D--HCWYHLDMHRVESFLV  340 (378)
Q Consensus       286 ~~~~~W~~~~~i~~-~-~----~~~~~~~~~~~g~~v~~~~~~~-~--~~~ydl~~~~~~~v~~  340 (378)
                      .  .+-..+-+++. + .    .+..-+.+.++|..++...+.. .  +|..|..+++++-+..
T Consensus       224 ~--g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~  285 (346)
T COG2706         224 V--GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGI  285 (346)
T ss_pred             C--ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEE
Confidence            2  34666655554 2 1    3456677788999666654432 2  6666888888888855

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=81.61  E-value=0.41  Score=44.61  Aligned_cols=37  Identities=22%  Similarity=0.270  Sum_probs=33.8

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCCh
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSK   40 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p   40 (378)
                      ..||.|++..||+-|..+++.|++.+|+.|+.+..|-
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~  109 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDG  109 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcc
Confidence            4699999999999999999999999999999887653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=81.41  E-value=45  Score=33.11  Aligned_cols=120  Identities=16%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCC---CCcccceEEEECCeEEEEEcCCCcE
Q 044435          204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEG---GGGELSGVYVLKGCLSLLCKYSEPW  277 (378)
Q Consensus       204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~---~~~~~~~l~~~~G~L~~~~~~~~~l  277 (378)
                      ...+++.+|.+|.....+       .|.++|..++  .|+.- ..|......   ..... .++..+|++++.....   
T Consensus        62 ~stPvv~~g~vyv~s~~g-------~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~~~~v~v~t~dg---  130 (527)
T TIGR03075        62 ESQPLVVDGVMYVTTSYS-------RVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALYDGKVFFGTLDA---  130 (527)
T ss_pred             ccCCEEECCEEEEECCCC-------cEEEEECCCCceeeEecCCCCcccccccccccccc-cceEECCEEEEEcCCC---
Confidence            345788999999876543       6999998764  55543 333221110   00011 2344566666544321   


Q ss_pred             EEEEeccCCCCcceEEEEEecC-C--CceeEEEEEEeCCCEEEEEeC------CCeEEEEECCCCeEEEE
Q 044435          278 DLWVMKEYGVKDSWSKLFTMNE-N--GYRVIPLAFSSRGDKVLFQKN------SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       278 ~iW~l~~~~~~~~W~~~~~i~~-~--~~~~~~~~~~~~g~~v~~~~~------~~~~~~ydl~~~~~~~v  338 (378)
                      .+..++-...+..|.... .+. .  .....|+..  ++ .|++...      ++.+++||.+|++..+-
T Consensus       131 ~l~ALDa~TGk~~W~~~~-~~~~~~~~~tssP~v~--~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~  196 (527)
T TIGR03075       131 RLVALDAKTGKVVWSKKN-GDYKAGYTITAAPLVV--KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWR  196 (527)
T ss_pred             EEEEEECCCCCEEeeccc-ccccccccccCCcEEE--CC-EEEEeecccccCCCcEEEEEECCCCceeEe
Confidence            234444322234565422 111 0  011223333  33 4666542      34699999999986654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	378
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 1e-07
 Identities = 36/268 (13%), Positives = 78/268 (29%), Gaps = 60/268 (22%)

Query: 5   KLPLDV--IIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVIC 62
            LP +V       + +  +S+        +++ +   K      L+  I++S N      
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTTIIESSLN------ 364

Query: 63  SDLD-YNLKTRFHSLSLDSLGGGDDDGSI---------IDLRVNEMFDIIIGSCNGLLAL 112
             L+    +  F  LS+           I          D+  +++  ++       L  
Sbjct: 365 -VLEPAEYRKMFDRLSV-----FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 113 KNYPKGIILLNPL-----------TKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLV 161
           K   +  I +  +              HR +   Y                   D Y   
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDS--DDLIPPY-LDQY--- 472

Query: 162 RIHVFKSPVYHIEATVYGLKVNLWRRI--------KNIKNFPYSWADHSYGGN--GAFVN 211
               +    +H++   +  ++ L+R +        + I++   +W       N       
Sbjct: 473 ---FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 212 GALHWLANQNQDEMINDLILAFDLNIET 239
              +   N  + E + + IL F   IE 
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEE 557

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 39.9 bits (92), Expect = 8e-04
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)

Query: 6  LPLDVIIDILIRLPGKSLLRF-RCISKSFRSLIDSKDFINLHLSR 49
          LP  +++ +L  LP   L++  R +   ++ L+D      L   +
Sbjct: 54 LPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQ 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	378
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.55
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.53
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.51
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.51
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.49
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	99.4
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	99.4
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	99.38
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	99.35
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	99.34
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.33
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	99.29
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	99.12
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	99.09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.01
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	98.97
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.95
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.95
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.82
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	98.76
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	98.62
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.48
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.66
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	97.05
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	96.9
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	96.83
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.77
3jrp_A	379	Fusion protein of protein transport protein SEC13	96.33
3jro_A	753	Fusion protein of protein transport protein SEC13	96.3
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	96.27
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	96.22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.21
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	96.04
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	96.03
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	95.96
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	95.92
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	95.79
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	95.67
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	95.58
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	95.56
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	95.52
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.39
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	95.37
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	95.33
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	95.31
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	95.21
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	95.07
3ow8_A	321	WD repeat-containing protein 61; structural genomi	95.06
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	95.05
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	95.04
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	94.81
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	94.65
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	94.56
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	94.46
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	94.41
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	94.36
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	94.29
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	94.23
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	94.11
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	94.05
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	93.94
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	93.93
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	93.93
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	93.77
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	93.72
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	93.58
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	93.48
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	93.34
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	93.31
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	93.19
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	93.18
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	93.11
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	93.07
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	93.02
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	92.94
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	92.89
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	92.85
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	92.8
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	92.76
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	92.63
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	92.61
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	92.57
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	92.48
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	92.38
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	92.37
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	92.22
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	92.1
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	92.0
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	91.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	91.88
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	91.64
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	91.64
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	91.57
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	91.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	91.49
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	91.44
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	91.27
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	91.27
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	91.24
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	91.15
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	91.13
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	91.13
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	90.82
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	90.66
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.58
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	90.52
2pm7_B	297	Protein transport protein SEC13, protein transport	90.2
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	90.19
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	90.07
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	89.8
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	89.6
2pm7_B	297	Protein transport protein SEC13, protein transport	89.53
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	89.44
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	89.33
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	88.87
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	88.85
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	88.81
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	88.78
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	88.71
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	88.47
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	88.41
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	88.03
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	87.99
3jro_A	753	Fusion protein of protein transport protein SEC13	87.97
3ow8_A	321	WD repeat-containing protein 61; structural genomi	87.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	87.91
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	87.6
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	87.43
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	87.32
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	87.31
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	87.3
3v9f_A	781	Two-component system sensor histidine kinase/RESP	87.16
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	86.73
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	86.69
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	86.38
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	86.36
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	86.33
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	86.32
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	86.09
2p4o_A	306	Hypothetical protein; putative lactonase, structur	85.9
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	85.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	85.63
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	85.54
3v65_B	386	Low-density lipoprotein receptor-related protein;	85.52
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	85.21
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	84.97
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	84.81
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	84.68
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	84.56
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	84.25
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	84.16
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	83.85
3v65_B	386	Low-density lipoprotein receptor-related protein;	83.63
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	83.52
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	83.44
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	83.3
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	83.3
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	82.78
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	82.62
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	82.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	81.85
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	81.11
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	80.43
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	80.37

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.55  E-value=1.9e-12  Score=117.79  Aligned_cols=195  Identities=17%  Similarity=0.221  Sum_probs=131.4

Q ss_pred             EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccc
Q 044435          119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSW  198 (378)
Q Consensus       119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~  198 (378)
                      +.++||.|++|..+|++|.++..   .  +....  .+...|++............+++|++.+++|+.++.+   |.  
T Consensus        80 ~~~~d~~~~~W~~~~~~p~~r~~---~--~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~---p~--  147 (318)
T 2woz_A           80 FFQLDNVSSEWVGLPPLPSARCL---F--GLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL---PI--  147 (318)
T ss_dssp             EEEEETTTTEEEECSCBSSCBCS---C--EEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC---SS--
T ss_pred             EEEEeCCCCcEEECCCCCccccc---c--ceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC---CC--
Confidence            78999999999999988865432   1  11111  2334444433212334456899999999999999877   54  


Q ss_pred             cccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC--
Q 044435          199 ADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE--  275 (378)
Q Consensus       199 ~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~--  275 (378)
                      .  ......+.++|+||.+++..........+.+||+.+++|+.+ ++|....     .. .++..+|+|+++.+...  
T Consensus       148 ~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG~~~~~  219 (318)
T 2woz_A          148 K--VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-----MF-GVAIHKGKIVIAGGVTEDG  219 (318)
T ss_dssp             C--EESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-----SC-EEEEETTEEEEEEEEETTE
T ss_pred             c--ccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-----cc-eEEEECCEEEEEcCcCCCC
Confidence            2  344557889999999998643322335799999999999998 5554322     22 56778999999987543  


Q ss_pred             -cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC--------------CCeEEEEECCCCeEEEE
Q 044435          276 -PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN--------------SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       276 -~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~--------------~~~~~~ydl~~~~~~~v  338 (378)
                       .-.+|.++..  ..+|+.+..++. +.  ...+++. ++.++++...              ...++.||+++++|+++
T Consensus       220 ~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          220 LSASVEAFDLK--TNKWEVMTEFPQERS--SISLVSL-AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEEEEEEEETT--TCCEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             ccceEEEEECC--CCeEEECCCCCCccc--ceEEEEE-CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence             3567777753  357999876665 33  2222332 5554444321              13499999999999999

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.53  E-value=1.6e-12  Score=118.20  Aligned_cols=195  Identities=13%  Similarity=0.150  Sum_probs=132.8

Q ss_pred             EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe-cCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF-KSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~-~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      +.++||.|++|..+|++|.++..    . +...  ..+...|++.... ........+++|+..+++|+.++.+   |. 
T Consensus        69 ~~~~d~~~~~W~~~~~~p~~r~~----~-~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~-  137 (315)
T 4asc_A           69 FLQFDHLDSEWLGMPPLPSPRCL----F-GLGE--ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPL---PY-  137 (315)
T ss_dssp             EEEEETTTTEEEECCCBSSCEES----C-EEEE--ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCC---SS-
T ss_pred             eEEecCCCCeEEECCCCCcchhc----e-eEEE--ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCC---CC-
Confidence            78999999999999988865421    1 1111  1233333333321 2234556899999999999999877   54 


Q ss_pred             ccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC-
Q 044435          198 WADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE-  275 (378)
Q Consensus       198 ~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~-  275 (378)
                         .......+.++|+||.+++..........+.+||+.+++|+.+ ++|...     ... ..+..+|+|+++.+... 
T Consensus       138 ---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~~  208 (315)
T 4asc_A          138 ---VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTAR-----SLF-GATVHDGRIIVAAGVTDT  208 (315)
T ss_dssp             ---CCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEETTEEEEEEEECSS
T ss_pred             ---cccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCch-----hce-EEEEECCEEEEEeccCCC
Confidence               2345567889999999998743333346799999999999998 566432     223 56778999999998654 


Q ss_pred             --cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC--------------CeEEEEECCCCeEEEE
Q 044435          276 --PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS--------------KDHCWYHLDMHRVESF  338 (378)
Q Consensus       276 --~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~--------------~~~~~ydl~~~~~~~v  338 (378)
                        .-.+|.++..  ...|+.+..++. +.  ...+++. ++.++++....              ..++.||+++++|+.+
T Consensus       209 ~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          209 GLTSSAEVYSIT--DNKWAPFEAFPQERS--SLSLVSL-VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             SEEEEEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             CccceEEEEECC--CCeEEECCCCCCccc--ceeEEEE-CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence              4477888763  357999876655 33  1222222 55555554321              2489999999999999

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.52  E-value=4.3e-12  Score=114.73  Aligned_cols=210  Identities=9%  Similarity=-0.035  Sum_probs=137.5

Q ss_pred             eeccceEEEee-----cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEE
Q 044435          104 GSCNGLLALKN-----YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY  178 (378)
Q Consensus       104 ~s~~GLl~l~~-----~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vy  178 (378)
                      ...+|.|.+..     ....+.++||.|++|..++++|.++..    ..+..+   .+...|++... ........+++|
T Consensus        52 ~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~~-~~~~~~~~~~~~  123 (306)
T 3ii7_A           52 VFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDS----LAACAA---EGKIYTSGGSE-VGNSALYLFECY  123 (306)
T ss_dssp             EEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBS----CEEEEE---TTEEEEECCBB-TTBSCCCCEEEE
T ss_pred             EEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccc----eeEEEE---CCEEEEECCCC-CCCcEeeeEEEE
Confidence            34466655443     235688999999999999988765422    111222   22333333221 133345679999


Q ss_pred             EcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCccc---ceEEEEEEcCCceeeee-cCCCCCCCCCC
Q 044435          179 GLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMI---NDLILAFDLNIETFYSM-PMPGFGNEGGG  254 (378)
Q Consensus       179 ss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~---~~~i~~fD~~~~~~~~i-~lP~~~~~~~~  254 (378)
                      ++.+++|+.++.+   |.    .......+.++|++|.+++.......   ...+.+||+.+++|+.+ ++|....    
T Consensus       124 d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~----  192 (306)
T 3ii7_A          124 DTRTESWHTKPSM---LT----QRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK----  192 (306)
T ss_dssp             ETTTTEEEEECCC---SS----CCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB----
T ss_pred             eCCCCceEeCCCC---cC----CcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh----
Confidence            9999999999877   54    23455678899999999976432211   35799999999999999 5554322    


Q ss_pred             cccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeE
Q 044435          255 GELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDH  325 (378)
Q Consensus       255 ~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~  325 (378)
                       .. .++..+|+|+++.+...   .-.+|.++..  ..+|+.+..++. +.  ...+++. ++.++++...+     ..+
T Consensus       193 -~~-~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~  265 (306)
T 3ii7_A          193 -NH-GLVFVKDKIFAVGGQNGLGGLDNVEYYDIK--LNEWKMVSPMPWKGV--TVKCAAV-GSIVYVLAGFQGVGRLGHI  265 (306)
T ss_dssp             -SC-EEEEETTEEEEECCEETTEEBCCEEEEETT--TTEEEECCCCSCCBS--CCEEEEE-TTEEEEEECBCSSSBCCEE
T ss_pred             -cc-eEEEECCEEEEEeCCCCCCCCceEEEeeCC--CCcEEECCCCCCCcc--ceeEEEE-CCEEEEEeCcCCCeeeeeE
Confidence             23 56778999999987543   3456777753  357998876655 33  1222222 56645554321     359


Q ss_pred             EEEECCCCeEEEEe
Q 044435          326 CWYHLDMHRVESFL  339 (378)
Q Consensus       326 ~~ydl~~~~~~~v~  339 (378)
                      ..||+++++|+.+.
T Consensus       266 ~~yd~~~~~W~~~~  279 (306)
T 3ii7_A          266 LEYNTETDKWVANS  279 (306)
T ss_dssp             EEEETTTTEEEEEE
T ss_pred             EEEcCCCCeEEeCC
Confidence            99999999999995

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.51  E-value=5.1e-12  Score=114.06  Aligned_cols=209  Identities=11%  Similarity=0.081  Sum_probs=137.9

Q ss_pred             eeccceEEEee------cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEE
Q 044435          104 GSCNGLLALKN------YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATV  177 (378)
Q Consensus       104 ~s~~GLl~l~~------~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~v  177 (378)
                      ...+|.|.+..      ....+.++||.|++|..+|++|.++..    ..+..+   .+...|++..  ........+++
T Consensus        58 ~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~--~~~~~~~~~~~  128 (302)
T 2xn4_A           58 VYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRST----LGAAVL---NGLLYAVGGF--DGSTGLSSVEA  128 (302)
T ss_dssp             EEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBS----CEEEEE---TTEEEEEEEE--CSSCEEEEEEE
T ss_pred             EEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccc----eEEEEE---CCEEEEEcCC--CCCccCceEEE
Confidence            34466665543      134689999999999999988765422    111112   2333344333  33334568999


Q ss_pred             EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc-ccceEEEEEEcCCceeeee-cCCCCCCCCCCc
Q 044435          178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE-MINDLILAFDLNIETFYSM-PMPGFGNEGGGG  255 (378)
Q Consensus       178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~  255 (378)
                      |++.+++|+.++.+   |.    .......+.++|+||.+++..... .....+..||+.+++|+.+ ++|....     
T Consensus       129 ~d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----  196 (302)
T 2xn4_A          129 YNIKSNEWFHVAPM---NT----RRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRS-----  196 (302)
T ss_dssp             EETTTTEEEEECCC---SS----CCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCB-----
T ss_pred             EeCCCCeEeecCCC---CC----cccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccc-----
Confidence            99999999999877   54    234455788999999999764322 1135799999999999998 5554322     


Q ss_pred             ccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEE
Q 044435          256 ELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHC  326 (378)
Q Consensus       256 ~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~  326 (378)
                      .. .++..+|+|+++.+...   .-++|.++..  ...|+.+..++. +.  ...+++. ++.++++...+     ..+.
T Consensus       197 ~~-~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~--~~~W~~~~~~~~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~  270 (302)
T 2xn4_A          197 GA-GVGVLNNLLYAVGGHDGPLVRKSVEVYDPT--TNAWRQVADMNMCRR--NAGVCAV-NGLLYVVGGDDGSCNLASVE  270 (302)
T ss_dssp             SC-EEEEETTEEEEECCBSSSSBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEE
T ss_pred             cc-cEEEECCEEEEECCCCCCcccceEEEEeCC--CCCEeeCCCCCCccc--cCeEEEE-CCEEEEECCcCCCcccccEE
Confidence            23 56778999999987654   3467777753  357998876655 33  2222332 56544444322     2499


Q ss_pred             EEECCCCeEEEEe
Q 044435          327 WYHLDMHRVESFL  339 (378)
Q Consensus       327 ~ydl~~~~~~~v~  339 (378)
                      .||+++++|+.+.
T Consensus       271 ~yd~~~~~W~~~~  283 (302)
T 2xn4_A          271 YYNPTTDKWTVVS  283 (302)
T ss_dssp             EEETTTTEEEECS
T ss_pred             EEcCCCCeEEECC
Confidence            9999999999984

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.51  E-value=3.5e-12  Score=115.56  Aligned_cols=195  Identities=12%  Similarity=0.102  Sum_probs=130.3

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..+.++||.|++|..++++|.++..    .....+   .+...|++..  ........+++|++.+++|+.++.+   |.
T Consensus        90 ~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~iyv~GG~--~~~~~~~~~~~yd~~~~~W~~~~~~---p~  157 (308)
T 1zgk_A           90 SALDCYNPMTNQWSPCAPMSVPRNR----IGVGVI---DGHIYAVGGS--HGCIHHNSVERYEPERDEWHLVAPM---LT  157 (308)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBT----CEEEEE---TTEEEEECCE--ETTEECCCEEEEETTTTEEEECCCC---SS
T ss_pred             ceEEEECCCCCeEeECCCCCcCccc----cEEEEE---CCEEEEEcCC--CCCcccccEEEECCCCCeEeECCCC---Cc
Confidence            4689999999999999988765421    111122   2333333322  2223345799999999999999877   54


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE  275 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~  275 (378)
                          .......+.++|+||.+++..... ....+..||+.+++|+.+ ++|...     ... .++..+|+|+++.+...
T Consensus       158 ----~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~  226 (308)
T 1zgk_A          158 ----RRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITAMNTIR-----SGA-GVCVLHNCIYAAGGYDG  226 (308)
T ss_dssp             ----CCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCCCSSCC-----BSC-EEEEETTEEEEECCBCS
T ss_pred             ----cccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCCCCCcc-----ccc-eEEEECCEEEEEeCCCC
Confidence                234456788899999999865322 135799999999999998 555432     223 56778999999987653


Q ss_pred             ---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435          276 ---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 ---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~  339 (378)
                         .-++|.++..  ..+|+.+..++. +.  ...+++. ++.++++...     ...+..||+++++|+.+.
T Consensus       227 ~~~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  294 (308)
T 1zgk_A          227 QDQLNSVERYDVE--TETWTFVAPMKHRRS--ALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVT  294 (308)
T ss_dssp             SSBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEE
T ss_pred             CCccceEEEEeCC--CCcEEECCCCCCCcc--ceEEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeecC
Confidence               4567777753  357998876555 33  1222222 5554444432     135999999999999984

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.49  E-value=8.5e-12  Score=112.49  Aligned_cols=208  Identities=12%  Similarity=0.115  Sum_probs=135.8

Q ss_pred             eeccceEEEee------cCCcEEEEcCcccc---eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceE
Q 044435          104 GSCNGLLALKN------YPKGIILLNPLTKK---HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIE  174 (378)
Q Consensus       104 ~s~~GLl~l~~------~~~~~~V~NP~t~~---~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~  174 (378)
                      ...+|.+.+..      ....+.++||.|++   |..++++|.++..    .....+   .+.  ++.+.-.........
T Consensus        59 ~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~----~~~~~~---~~~--lyv~GG~~~~~~~~~  129 (301)
T 2vpj_A           59 VSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGL----AGATTL---GDM--IYVSGGFDGSRRHTS  129 (301)
T ss_dssp             EEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBS----CEEEEE---TTE--EEEECCBCSSCBCCE
T ss_pred             EEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccc----eeEEEE---CCE--EEEEcccCCCcccce
Confidence            34456555442      13468999999999   9999988765421    111222   222  333321122233568


Q ss_pred             EEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCC
Q 044435          175 ATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGG  253 (378)
Q Consensus       175 ~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~  253 (378)
                      +++|++.+++|+.++.+   |.    .......+.++|+||.+++..... ....+.+||+.+++|+.+ ++|....   
T Consensus       130 ~~~~d~~~~~W~~~~~~---p~----~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~---  198 (301)
T 2vpj_A          130 MERYDPNIDQWSMLGDM---QT----AREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTPMATKRS---  198 (301)
T ss_dssp             EEEEETTTTEEEEEEEC---SS----CCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECCCSSCCB---
T ss_pred             EEEEcCCCCeEEECCCC---CC----CcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCCCCcccc---
Confidence            99999999999999877   54    234456788899999999865321 235799999999999998 5554332   


Q ss_pred             CcccceEEEECCeEEEEEcCCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----Ce
Q 044435          254 GGELSGVYVLKGCLSLLCKYSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KD  324 (378)
Q Consensus       254 ~~~~~~l~~~~G~L~~~~~~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~  324 (378)
                        .. .++..+|+|+++.+...   .-++|.++..  ..+|+.+..++. +.  ....++. ++.++++...+     ..
T Consensus       199 --~~-~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~  270 (301)
T 2vpj_A          199 --GA-GVALLNDHIYVVGGFDGTAHLSSVEAYNIR--TDSWTTVTSMTTPRC--YVGATVL-RGRLYAIAGYDGNSLLSS  270 (301)
T ss_dssp             --SC-EEEEETTEEEEECCBCSSSBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBEEE
T ss_pred             --cc-eEEEECCEEEEEeCCCCCcccceEEEEeCC--CCcEEECCCCCCccc--ceeEEEE-CCEEEEEcCcCCCccccc
Confidence              23 56778999999987653   3456777653  357998876665 33  2222332 56644444322     24


Q ss_pred             EEEEECCCCeEEEEe
Q 044435          325 HCWYHLDMHRVESFL  339 (378)
Q Consensus       325 ~~~ydl~~~~~~~v~  339 (378)
                      +..||+++++|+.+.
T Consensus       271 v~~yd~~~~~W~~~~  285 (301)
T 2vpj_A          271 IECYDPIIDSWEVVT  285 (301)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCeEEEcC
Confidence            899999999999984

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=99.40  E-value=7.3e-11  Score=106.28  Aligned_cols=195  Identities=10%  Similarity=0.096  Sum_probs=129.6

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc---EEecCcccC
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL---WRRIKNIKN  193 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~---W~~~~~~~~  193 (378)
                      ..+.++||.|++|..++++|.++..    ......   .+...|++..  ........+++|+..++.   |+.++.+  
T Consensus        31 ~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~l~v~GG~--~~~~~~~~~~~~d~~~~~~~~W~~~~~~--   99 (301)
T 2vpj_A           31 DVVEKYDPKTQEWSFLPSITRKRRY----VASVSL---HDRIYVIGGY--DGRSRLSSVECLDYTADEDGVWYSVAPM--   99 (301)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS----CEEEEE---TTEEEEECCB--CSSCBCCCEEEEETTCCTTCCCEEECCC--
T ss_pred             eEEEEEcCCCCeEEeCCCCChhhcc----ccEEEE---CCEEEEEcCC--CCCccCceEEEEECCCCCCCeeEECCCC--
Confidence            4689999999999999987764321    111112   2222232222  223345679999999999   9999877  


Q ss_pred             CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435          194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCK  272 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~  272 (378)
                       |.    .......+.++|++|.+++..... ....+..||+.+++|+.+ ++|....     .. ..+..+|+|+++.+
T Consensus       100 -p~----~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG  167 (301)
T 2vpj_A          100 -NV----RRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGDMQTARE-----GA-GLVVASGVIYCLGG  167 (301)
T ss_dssp             -SS----CCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEECSSCCB-----SC-EEEEETTEEEEECC
T ss_pred             -CC----CccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCCCCCCcc-----cc-eEEEECCEEEEECC
Confidence             54    234456788899999999865322 235799999999999998 6664332     22 56778999999987


Q ss_pred             CCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435          273 YSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       273 ~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~  339 (378)
                      ...   .-.+|.++..  ..+|+.+..++. +.  ...+.+. ++.++++...     ...+..||+++++|+.+.
T Consensus       168 ~~~~~~~~~~~~~d~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  238 (301)
T 2vpj_A          168 YDGLNILNSVEKYDPH--TGHWTNVTPMATKRS--GAGVALL-NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT  238 (301)
T ss_dssp             BCSSCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CCCCcccceEEEEeCC--CCcEEeCCCCCcccc--cceEEEE-CCEEEEEeCCCCCcccceEEEEeCCCCcEEECC
Confidence            653   3456777753  357998866555 32  1222222 5554444332     135999999999999995

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=99.40  E-value=6.4e-11  Score=107.51  Aligned_cols=199  Identities=10%  Similarity=0.083  Sum_probs=130.7

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCccc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIK  192 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~  192 (378)
                      ..+.++||.|++|.. +++|.+..  . .  +.+.....+...|++......    ......+++|+..+++|+.++.+ 
T Consensus        13 ~~~~~yd~~~~~W~~-~~~~~p~~--r-~--~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~-   85 (315)
T 4asc_A           13 EGAVAYDPAANECYC-ASLSSQVP--K-N--HVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL-   85 (315)
T ss_dssp             TEEEEEETTTTEEEE-EECCCCSC--S-S--EEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB-
T ss_pred             CceEEECCCCCeEec-CCCCCCCC--c-c--ceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC-
Confidence            578999999999986 44433211  1 1  112222345556666543221    12234589999999999999877 


Q ss_pred             CCCccccccccCCcceeeCCeEEEEeecCC--CcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEE
Q 044435          193 NFPYSWADHSYGGNGAFVNGALHWLANQNQ--DEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSL  269 (378)
Q Consensus       193 ~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~--~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~  269 (378)
                        |.    .+.....+.++|++|.+++...  .......+.+||+.+++|+.+ ++|....     .. ..+..+|+|++
T Consensus        86 --p~----~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv  153 (315)
T 4asc_A           86 --PS----PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVY-----GH-TVLSHMDLVYV  153 (315)
T ss_dssp             --SS----CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCB-----SC-EEEEETTEEEE
T ss_pred             --Cc----chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCccc-----ce-eEEEECCEEEE
Confidence              54    2344567889999999998542  122345799999999999998 6665432     23 56778999999


Q ss_pred             EEcC-CC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC-----eEEEEECCCCeEEEEe
Q 044435          270 LCKY-SE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK-----DHCWYHLDMHRVESFL  339 (378)
Q Consensus       270 ~~~~-~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~-----~~~~ydl~~~~~~~v~  339 (378)
                      +.+. ..   .-++|.++..  ..+|+.+..++. +.  ....++. ++.++++.....     .+..||+++++|+.+.
T Consensus       154 ~GG~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  228 (315)
T 4asc_A          154 IGGKGSDRKCLNKMCVYDPK--KFEWKELAPMQTARS--LFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFE  228 (315)
T ss_dssp             ECCBCTTSCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEEEEEC
T ss_pred             EeCCCCCCcccceEEEEeCC--CCeEEECCCCCCchh--ceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeEEECC
Confidence            9986 22   4467777753  357998876655 33  1222232 566555554322     4999999999999995

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=99.38  E-value=6.6e-11  Score=106.90  Aligned_cols=196  Identities=11%  Similarity=0.078  Sum_probs=130.9

Q ss_pred             CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435          116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP  195 (378)
Q Consensus       116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p  195 (378)
                      ...+.++||.+++|..++++|.++..    .....+   .+...|++..  . ......+++|+..+++|+.++.+   |
T Consensus        23 ~~~~~~~d~~~~~W~~~~~~p~~r~~----~~~~~~---~~~lyv~GG~--~-~~~~~~~~~~d~~~~~W~~~~~~---p   89 (306)
T 3ii7_A           23 PQSCRYFNPKDYSWTDIRCPFEKRRD----AACVFW---DNVVYILGGS--Q-LFPIKRMDCYNVVKDSWYSKLGP---P   89 (306)
T ss_dssp             TTSEEEEETTTTEEEECCCCSCCCBS----CEEEEE---TTEEEEECCB--S-SSBCCEEEEEETTTTEEEEEECC---S
T ss_pred             CceEEEecCCCCCEecCCCCCcccce----eEEEEE---CCEEEEEeCC--C-CCCcceEEEEeCCCCeEEECCCC---C
Confidence            45789999999999999988765422    111112   2223333322  2 34457899999999999999877   5


Q ss_pred             ccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC
Q 044435          196 YSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS  274 (378)
Q Consensus       196 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~  274 (378)
                      .    .......+.++|++|.+++..........+..||+.+++|+.+ ++|...     ... .++..+|+|+++.+..
T Consensus        90 ~----~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 T----PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQR-----CSH-GMVEANGLIYVCGGSL  159 (306)
T ss_dssp             S----CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCC-----BSC-EEEEETTEEEEECCEE
T ss_pred             c----cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCc-----cee-EEEEECCEEEEECCCC
Confidence            4    2344567889999999998753333346799999999999998 666433     223 5677899999998743


Q ss_pred             C-------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435          275 E-------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       275 ~-------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~  339 (378)
                      .       .-.+|.++..  ..+|+.+..++. +.  ...+++. ++.++++...     ...+..||+++++|+.+.
T Consensus       160 ~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~  232 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPA--TETWTELCPMIEARK--NHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS  232 (306)
T ss_dssp             SCTTTCEECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECC
T ss_pred             CCCCcccccceEEEeCCC--CCeEEECCCccchhh--cceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC
Confidence            2       2356777653  357998876555 33  2222332 5554444321     134999999999999994

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=99.35  E-value=1.1e-10  Score=105.17  Aligned_cols=195  Identities=11%  Similarity=0.073  Sum_probs=129.3

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..+.++||.+++|..++++|.++..   .. ...+   .+...|++..  ........+++|+..+++|+.++.+   |.
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~---~~-~~~~---~~~lyv~GG~--~~~~~~~~~~~~d~~~~~W~~~~~~---p~   97 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCR---AG-MVYM---AGLVFAVGGF--NGSLRVRTVDSYDPVKDQWTSVANM---RD   97 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBS---CE-EEEE---TTEEEEESCB--CSSSBCCCEEEEETTTTEEEEECCC---SS
T ss_pred             CcEEEEcCcCCcEeEcccCCccccc---ce-EEEE---CCEEEEEeCc--CCCccccceEEECCCCCceeeCCCC---Cc
Confidence            4578999999999999888765421   11 1111   2222232222  2223446799999999999999877   54


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE  275 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~  275 (378)
                          .......+.++|++|.+++.... .....+..||+.+++|+.+ ++|...     ... ..+..+|+|+++.+...
T Consensus        98 ----~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~~d~~~~~W~~~~~~p~~r-----~~~-~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           98 ----RRSTLGAAVLNGLLYAVGGFDGS-TGLSSVEAYNIKSNEWFHVAPMNTRR-----SSV-GVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             ----CCBSCEEEEETTEEEEEEEECSS-CEEEEEEEEETTTTEEEEECCCSSCC-----BSC-EEEEETTEEEEECCEET
T ss_pred             ----cccceEEEEECCEEEEEcCCCCC-ccCceEEEEeCCCCeEeecCCCCCcc-----cCc-eEEEECCEEEEEeCCCC
Confidence                23445678889999999986532 2235799999999999998 555432     223 56778999999987532


Q ss_pred             -----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-----CCeEEEEECCCCeEEEEe
Q 044435          276 -----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-----SKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 -----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-----~~~~~~ydl~~~~~~~v~  339 (378)
                           .-.+|.++..  ..+|+.+..++. +.  ...+++. ++.++++...     ...+..||+++++|+.+.
T Consensus       167 ~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  236 (302)
T 2xn4_A          167 ASRQCLSTVECYNAT--TNEWTYIAEMSTRRS--GAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVA  236 (302)
T ss_dssp             TTTEECCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CCCccccEEEEEeCC--CCcEEECCCCccccc--cccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCEeeCC
Confidence                 2356777653  357999876665 33  2222232 5554444332     135999999999999995

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=99.34  E-value=3.1e-11  Score=109.25  Aligned_cols=198  Identities=10%  Similarity=0.020  Sum_probs=130.1

Q ss_pred             CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEe--cCCCcceEEEEEEcCCCcEEecCcccC
Q 044435          116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVF--KSPVYHIEATVYGLKVNLWRRIKNIKN  193 (378)
Q Consensus       116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~--~~~~~~~~~~vyss~~~~W~~~~~~~~  193 (378)
                      ...+.++||.+++|..++++|.++..   .  +...  ..+...|++....  ........+++|+..+++|+.++.+  
T Consensus        38 ~~~~~~~d~~~~~W~~~~~~p~~r~~---~--~~~~--~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--  108 (308)
T 1zgk_A           38 LSYLEAYNPSNGTWLRLADLQVPRSG---L--AGCV--VGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM--  108 (308)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBS---C--EEEE--ETTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC--
T ss_pred             cceEEEEcCCCCeEeECCCCCccccc---c--eEEE--ECCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCC--
Confidence            34688999999999999988765422   1  1111  1233344433321  1112335799999999999999877  


Q ss_pred             CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435          194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCK  272 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~  272 (378)
                       |.    .......+.++|+||.+++.... .....+..||+.+++|+.+ ++|....     .. ..+..+|+|+++.+
T Consensus       109 -p~----~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~GG  176 (308)
T 1zgk_A          109 -SV----PRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRRI-----GV-GVAVLNRLLYAVGG  176 (308)
T ss_dssp             -SS----CCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCCB-----SC-EEEEETTEEEEECC
T ss_pred             -Cc----CccccEEEEECCEEEEEcCCCCC-cccccEEEECCCCCeEeECCCCCcccc-----ce-EEEEECCEEEEEeC
Confidence             54    23445678889999999876432 1224699999999999998 6664332     22 56777999999987


Q ss_pred             CCC---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435          273 YSE---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       273 ~~~---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~  339 (378)
                      ...   .-.+|.++..  ..+|+.+..++. +.  ...+++. ++.++++....     ..++.||+++++|+.+.
T Consensus       177 ~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~  247 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPE--RNEWRMITAMNTIRS--GAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  247 (308)
T ss_dssp             BCSSCBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             CCCCCcCceEEEEeCC--CCeEeeCCCCCCccc--cceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence            653   3456777653  357998876655 33  1222232 55544444321     35999999999999985

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.33  E-value=2.7e-11  Score=111.99  Aligned_cols=236  Identities=13%  Similarity=0.031  Sum_probs=138.5

Q ss_pred             ccceEEEee--cCCcEEEEcCc--ccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEe--c-CCCcceEEEE
Q 044435          106 CNGLLALKN--YPKGIILLNPL--TKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVF--K-SPVYHIEATV  177 (378)
Q Consensus       106 ~~GLl~l~~--~~~~~~V~NP~--t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~--~-~~~~~~~~~v  177 (378)
                      .+|.|.+..  ....++++||.  +++|..++++| .++..    ..+..+   .+...|++....  . .......+++
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~----~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~   90 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQ----ATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHK   90 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBS----CEEEEE---TTEEEEECCEEECTTSCEEECCCEEE
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCcc----ceEEEE---CCEEEEEcCCCCCCCccceeeccEEE
Confidence            366665553  34579999998  49999999887 44321    111222   233444444311  1 1123457999


Q ss_pred             EEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCc---------------------------------
Q 044435          178 YGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDE---------------------------------  224 (378)
Q Consensus       178 yss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~---------------------------------  224 (378)
                      |++.+++|+.++.+   +.   ..+.....+.++|+||.+++.....                                 
T Consensus        91 yd~~~~~W~~~~~~---~p---~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (357)
T 2uvk_A           91 YNPKTNSWVKLMSH---AP---MGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDY  164 (357)
T ss_dssp             EETTTTEEEECSCC---CS---SCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGG
T ss_pred             EeCCCCcEEECCCC---CC---cccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcccccccc
Confidence            99999999999887   31   2233444677999999999754211                                 


Q ss_pred             ccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCC----cEEEEEeccCCCCcceEEEEEecC
Q 044435          225 MINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE----PWDLWVMKEYGVKDSWSKLFTMNE  299 (378)
Q Consensus       225 ~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~----~l~iW~l~~~~~~~~W~~~~~i~~  299 (378)
                      .....+.+||+.+++|+.+ ++|....    ... .++..+|+|+++.+...    .-++|.++-+.....|+.+..++.
T Consensus       165 ~~~~~v~~yd~~~~~W~~~~~~p~~~~----~~~-~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~  239 (357)
T 2uvk_A          165 FFNKFLLSFDPSTQQWSYAGESPWYGT----AGA-AVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSS  239 (357)
T ss_dssp             CCCCEEEEEETTTTEEEEEEECSSCCC----BSC-EEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSST
T ss_pred             CCcccEEEEeCCCCcEEECCCCCCCCc----ccc-cEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCC
Confidence            0125899999999999998 6664322    112 66778999999986432    345676653112357998876654


Q ss_pred             -CCceeEEEEEEeCCCEEEEEeCC----------------------CeEEEEECCCCeEEEEeEeC--Cc--ceEEeeec
Q 044435          300 -NGYRVIPLAFSSRGDKVLFQKNS----------------------KDHCWYHLDMHRVESFLVKG--PS--DVHVCVDT  352 (378)
Q Consensus       300 -~~~~~~~~~~~~~g~~v~~~~~~----------------------~~~~~ydl~~~~~~~v~~~~--~~--~~~~y~~s  352 (378)
                       +......+++. ++.++++....                      ..+..||+++++|+.+.--.  ..  ....+-..
T Consensus       240 ~~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~  318 (357)
T 2uvk_A          240 PDGVAGGFAGIS-NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLPWNNS  318 (357)
T ss_dssp             TTCCBSCEEEEE-TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEEETTE
T ss_pred             CcccccceEEEE-CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEEeCCE
Confidence             32112223332 55544443311                      24889999999999995322  22  33444444


Q ss_pred             cccCCCCC
Q 044435          353 LVSPFAES  360 (378)
Q Consensus       353 lv~~~~~~  360 (378)
                      |.-+....
T Consensus       319 i~v~GG~~  326 (357)
T 2uvk_A          319 LLIIGGET  326 (357)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEeeeC
Confidence            44444433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=99.29  E-value=2.2e-10  Score=104.15  Aligned_cols=198  Identities=12%  Similarity=0.127  Sum_probs=125.6

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCcccC
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIKN  193 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~~  193 (378)
                      ...++||.+++|...+ ++.+..  . ..  .+.....+...|++......    ......+++|+..+++|+.++.+  
T Consensus        25 ~~~~yd~~~~~W~~~~-~~~~~~--r-~~--~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~--   96 (318)
T 2woz_A           25 AAVAYDPMENECYLTA-LAEQIP--R-NH--SSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL--   96 (318)
T ss_dssp             EEEEEETTTTEEEEEE-ECTTSC--S-SE--EEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB--
T ss_pred             ceEEECCCCCceeccc-CCccCC--c-cc--eEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC--
Confidence            4789999999998843 322110  1 11  11122334444444421111    11123489999999999999877  


Q ss_pred             CCccccccccCCcceeeCCeEEEEeecCC-CcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEE
Q 044435          194 FPYSWADHSYGGNGAFVNGALHWLANQNQ-DEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLC  271 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~-~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~  271 (378)
                       |.  .  ......+.++|++|.+++... .......+.+||+.+++|+.+ ++|....     .. ..+..+|+|+++.
T Consensus        97 -p~--~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-----~~-~~~~~~~~iyv~G  165 (318)
T 2woz_A           97 -PS--A--RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY-----GH-NVISHNGMIYCLG  165 (318)
T ss_dssp             -SS--C--BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEE-----SC-EEEEETTEEEEEC
T ss_pred             -Cc--c--ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCccc-----cc-EEEEECCEEEEEc
Confidence             54  2  344567889999999998752 222335799999999999998 6664322     22 5666899999998


Q ss_pred             cCCC----cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435          272 KYSE----PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       272 ~~~~----~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~  339 (378)
                      +...    .-++|.++..  ..+|+.+..++. +.  ...+++. ++.++++....     ..+..||+++++|+.+.
T Consensus       166 G~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~r~--~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~  238 (318)
T 2woz_A          166 GKTDDKKCTNRVFIYNPK--KGDWKDLAPMKTPRS--MFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMT  238 (318)
T ss_dssp             CEESSSCBCCCEEEEETT--TTEEEEECCCSSCCB--SCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECC
T ss_pred             CCCCCCCccceEEEEcCC--CCEEEECCCCCCCcc--cceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECC
Confidence            7521    3457777753  357998876655 33  1222332 56655554321     24889999999999985

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=99.12  E-value=3.7e-09  Score=106.27  Aligned_cols=214  Identities=9%  Similarity=0.018  Sum_probs=128.5

Q ss_pred             ccceEEEeec-----CCcEEEEcCcccceeecC-CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435          106 CNGLLALKNY-----PKGIILLNPLTKKHRVLP-KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG  179 (378)
Q Consensus       106 ~~GLl~l~~~-----~~~~~V~NP~t~~~~~LP-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys  179 (378)
                      .+|.|.+..+     ...+.++||.+++|..++ +.|...........+.......+...|++... ........+++|+
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~-~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRK-APHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBS-STTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCC-CCCCccccEEEEe
Confidence            4555554432     346889999999999998 53211000011111222211023333333322 1122346799999


Q ss_pred             cCCCcEEecCcccCCCccccccccCCcceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeeec----CCCCCCCCCC
Q 044435          180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSMP----MPGFGNEGGG  254 (378)
Q Consensus       180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~----lP~~~~~~~~  254 (378)
                      ..+++|+.++.+   |.    ....+..+.+ +|+||.+++.....    .+.+||+.+++|+.+.    +|....    
T Consensus       475 ~~t~~W~~~~~~---p~----~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~----  539 (695)
T 2zwa_A          475 MKTREWSMIKSL---SH----TRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSL----  539 (695)
T ss_dssp             TTTTEEEECCCC---SB----CCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCC----
T ss_pred             CCCCcEEECCCC---CC----CcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCccc----
Confidence            999999999877   54    3344556665 99999999875432    6999999999999985    443322    


Q ss_pred             cccceEEEEC---CeEEEEEcCCC-----cEEEEEeccCCCCcc------eEEEEEecC-CCceeEEEEEEeCCCEEEEE
Q 044435          255 GELSGVYVLK---GCLSLLCKYSE-----PWDLWVMKEYGVKDS------WSKLFTMNE-NGYRVIPLAFSSRGDKVLFQ  319 (378)
Q Consensus       255 ~~~~~l~~~~---G~L~~~~~~~~-----~l~iW~l~~~~~~~~------W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~  319 (378)
                       .. ..++.+   |+|+++++...     .-.+|.++...  ..      |+.+..++. ... ...+++..++.++++.
T Consensus       540 -~~-~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~--~~w~~~~~W~~~~~~p~~~R~-~~~~~~~~~~~iyv~G  614 (695)
T 2zwa_A          540 -VS-AGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDA--ENATEPITVIKKLQHPLFQRY-GSQIKYITPRKLLIVG  614 (695)
T ss_dssp             -BS-CEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECT--TCSSCCEEEEEEEECGGGCCB-SCEEEEEETTEEEEEC
T ss_pred             -ce-eEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccC--CccccceEEEEcCCCCCCCcc-cceEEEeCCCEEEEEC
Confidence             22 323434   89999987621     34677776532  33      888877643 221 2233444336645554


Q ss_pred             eC--------CCeEEEEECCCCeEEEEeE
Q 044435          320 KN--------SKDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       320 ~~--------~~~~~~ydl~~~~~~~v~~  340 (378)
                      ..        ...++.||+++++|+.+.+
T Consensus       615 G~~~~~~~~~~~~v~~yd~~t~~W~~~~~  643 (695)
T 2zwa_A          615 GTSPSGLFDRTNSIISLDPLSETLTSIPI  643 (695)
T ss_dssp             CBCSSCCCCTTTSEEEEETTTTEEEECCC
T ss_pred             CccCCCCCCCCCeEEEEECCCCeEEEeec
Confidence            31        2349999999999997644

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=99.09  E-value=9.2e-09  Score=94.84  Aligned_cols=201  Identities=9%  Similarity=0.056  Sum_probs=121.6

Q ss_pred             CcEEEEcCcccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEecC---------------------------
Q 044435          117 KGIILLNPLTKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS---------------------------  168 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~---------------------------  168 (378)
                      ..+.++||.|++|..+++++ ..+    ....+..+   .+...|++......                           
T Consensus        86 ~~v~~yd~~~~~W~~~~~~~p~~r----~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (357)
T 2uvk_A           86 NDVHKYNPKTNSWVKLMSHAPMGM----AGHVTFVH---NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFD  158 (357)
T ss_dssp             CCEEEEETTTTEEEECSCCCSSCC----SSEEEEEE---TTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             ccEEEEeCCCCcEEECCCCCCccc----ccceEEEE---CCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhcc
Confidence            46889999999999999877 222    11111222   23333333321110                           


Q ss_pred             -----CCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEc--CCceee
Q 044435          169 -----PVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDL--NIETFY  241 (378)
Q Consensus       169 -----~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~--~~~~~~  241 (378)
                           ......+++|+..+++|+.++.+   |.  .. ......+.++|+||.+++..........+..||+  .+++|+
T Consensus       159 ~~~~~~~~~~~v~~yd~~~~~W~~~~~~---p~--~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~  232 (357)
T 2uvk_A          159 KKAEDYFFNKFLLSFDPSTQQWSYAGES---PW--YG-TAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWN  232 (357)
T ss_dssp             SCGGGGCCCCEEEEEETTTTEEEEEEEC---SS--CC-CBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEE
T ss_pred             ccccccCCcccEEEEeCCCCcEEECCCC---CC--CC-cccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEE
Confidence                 01135899999999999999777   53  21 2235578899999999875432222346788876  899999


Q ss_pred             ee-cCCCCCCCCCCcccceEEEECCeEEEEEcCC-----------------C---cEEEEEeccCCCCcceEEEEEecC-
Q 044435          242 SM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYS-----------------E---PWDLWVMKEYGVKDSWSKLFTMNE-  299 (378)
Q Consensus       242 ~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~-----------------~---~l~iW~l~~~~~~~~W~~~~~i~~-  299 (378)
                      .+ ++|....   .... .++..+|+|+++.+..                 .   ...+|.++..  ..+|+++..++. 
T Consensus       233 ~~~~~~~~~~---~~~~-~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~--~~~W~~~~~~p~~  306 (357)
T 2uvk_A          233 KLAPVSSPDG---VAGG-FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWH--NGKWDKSGELSQG  306 (357)
T ss_dssp             ECCCSSTTTC---CBSC-EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC-----CEEEEECSSC
T ss_pred             ecCCCCCCcc---cccc-eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecC--CCceeeCCCCCCC
Confidence            88 5543221   1122 4678899999998732                 1   1356666643  357999987776 


Q ss_pred             CCceeEEEEEEeCCCEEEEEeCC------CeEEEEECCCCeEEEEe
Q 044435          300 NGYRVIPLAFSSRGDKVLFQKNS------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       300 ~~~~~~~~~~~~~g~~v~~~~~~------~~~~~ydl~~~~~~~v~  339 (378)
                      +..  ... +.-++.++++...+      ..++.+++++++|....
T Consensus       307 r~~--~~~-~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          307 RAY--GVS-LPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             CBS--SEE-EEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             ccc--cee-EEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            442  122 22366666665532      14888999999998774

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.01  E-value=4.2e-07  Score=86.40  Aligned_cols=294  Identities=12%  Similarity=0.099  Sum_probs=143.7

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccCC-hhHHHHHHhhcccCCCC--eEE--EEEecCCC---C--ceeEEE
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDS-KDFINLHLSRSIKTSSN--RSL--VICSDLDY---N--LKTRFH   74 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~-p~F~~~~~~~~~~~~~~--~~l--~~~~~~~~---~--~~~~~~   74 (378)
                      .||+|++.+||+.||+++|+++.+|||+|+.++.+ +..-+.+..........  ..+  -.......   .  ....+.
T Consensus        17 ~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (464)
T 3v7d_B           17 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQDRLRLSFL   96 (464)
T ss_dssp             HSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTTSCCTTTHHHHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred             HCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccccccccchhhhhhhhhccCCCcccchhhHHHHH
Confidence            49999999999999999999999999999999998 66554443221100000  000  00000000   0  000000


Q ss_pred             ec--cCCCCCCCCCCCceeeccc-CccceEEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEee
Q 044435           75 SL--SLDSLGGGDDDGSIIDLRV-NEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGY  151 (378)
Q Consensus        75 ~~--~~~~~~~~~~~~~~~~l~~-~~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~  151 (378)
                      .-  ....+...........+.. .......+...+++++....+..+.+||..+++...--...      ......+.+
T Consensus        97 ~~~~~~~~w~~~~~~~~~~~l~~h~~~v~~~~~~~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h------~~~V~~l~~  170 (464)
T 3v7d_B           97 ENIFILKNWYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVWALKY  170 (464)
T ss_dssp             HHHHHHHHHHCTTCCCEEEEEECCSSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEE
T ss_pred             HhhhhHhhhcCCCcCcceEEEcCCCCCcEEEEEECCCEEEEEcCCCcEEEEECCCCcEEEEEeCC------CcCEEEEEE
Confidence            00  0000000000011111211 11111233444566666667788999999887754322111      122345555


Q ss_pred             ecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-CcccCCCccccccccCCcceee----CCeEEEEeecCCCccc
Q 044435          152 DVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KNIKNFPYSWADHSYGGNGAFV----NGALHWLANQNQDEMI  226 (378)
Q Consensus       152 d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~~~~~p~~~~~~~~~~~~v~~----~G~lyw~~~~~~~~~~  226 (378)
                      .+..   .++....      ...+.+++..++.-... ...   ..  .     -.++.+    +|.....+..++    
T Consensus       171 ~~~~---~l~s~s~------dg~i~vwd~~~~~~~~~~~~h---~~--~-----v~~l~~~~~~~~~~l~s~s~d~----  227 (464)
T 3v7d_B          171 AHGG---ILVSGST------DRTVRVWDIKKGCCTHVFEGH---NS--T-----VRCLDIVEYKNIKYIVTGSRDN----  227 (464)
T ss_dssp             CSTT---EEEEEET------TSCEEEEETTTTEEEEEECCC---SS--C-----EEEEEEEESSSCEEEEEEETTS----
T ss_pred             cCCC---EEEEEeC------CCCEEEEECCCCcEEEEECCC---CC--c-----cEEEEEecCCCCCEEEEEcCCC----
Confidence            4433   3333321      34688888877642211 100   00  0     011111    344444444432    


Q ss_pred             ceEEEEEEcCCceeeee-cC----------CCCC------CCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          227 NDLILAFDLNIETFYSM-PM----------PGFG------NEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       227 ~~~i~~fD~~~~~~~~i-~l----------P~~~------~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                        .|..+|+.+..-... ..          |...      .......+ .-...+|.+.++...++.+.+|-+..     
T Consensus       228 --~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~~~~l~~~~~d~~i~vwd~~~-----  299 (464)
T 3v7d_B          228 --TLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASV-RTVSGHGNIVVSGSYDNTLIVWDVAQ-----  299 (464)
T ss_dssp             --CEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCE-EEEEEETTEEEEEETTSCEEEEETTT-----
T ss_pred             --cEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceE-EEEcCCCCEEEEEeCCCeEEEEECCC-----
Confidence              688888876543211 00          0000      00000111 11234566666776777999998764     


Q ss_pred             ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                       -..+..+.........+++.++|..++....++.+..||+++++..
T Consensus       300 -~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~  345 (464)
T 3v7d_B          300 -MKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM  345 (464)
T ss_dssp             -TEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEE
T ss_pred             -CcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEE
Confidence             2233344431112556777778887777777777999999877644

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=98.97  E-value=4.1e-07  Score=86.08  Aligned_cols=282  Identities=11%  Similarity=0.035  Sum_probs=140.7

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcccCCCCeEEEEEecCCCC---ceeE-EEec--c
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKTSSNRSLVICSDLDYN---LKTR-FHSL--S   77 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~-~~~~--~   77 (378)
                      ..||+|++..||+.|++++|.++.+|||+|+.++.++.+-+..........+ ...-........   ..+. .|..  .
T Consensus        20 ~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wk~~~~~~~~   98 (445)
T 2ovr_B           20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEP-LHIKRRKVIKPGFIHSPWKSAYIRQHR   98 (445)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSC-CCCCC--CCSSCCCCCHHHHHHHHHHH
T ss_pred             HHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccc-cccccceecCCCccCCcHHHHHhhhhh
Confidence            4699999999999999999999999999999999998876665543221100 000000000000   0000 0000  0


Q ss_pred             C-CCCCCCCCCCceeecccC-ccceEEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC
Q 044435           78 L-DSLGGGDDDGSIIDLRVN-EMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS  155 (378)
Q Consensus        78 ~-~~~~~~~~~~~~~~l~~~-~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~  155 (378)
                      . ..+... .......+..+ ......+...+.+++....+..+.|||..+++....-...      ......+.++   
T Consensus        99 ~~~~w~~~-~~~~~~~l~~h~~~v~~~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~---  168 (445)
T 2ovr_B           99 IDTNWRRG-ELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGH------TGGVWSSQMR---  168 (445)
T ss_dssp             HHHHHHHS-CCCCCEEEECSTTSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEECCCC------SSCEEEEEEE---
T ss_pred             hhhcccCC-CcceeEEecccCCCcEEEEEEcCCEEEEEECCCcEEEEECCCCcEEEEEcCC------CCCEEEEEec---
Confidence            0 000000 00001111111 1111234444555666667788999999988755322211      1123345554   


Q ss_pred             CCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEc
Q 044435          156 DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDL  235 (378)
Q Consensus       156 ~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~  235 (378)
                      +.+ ++...      ....+.+++..++.-...  .   ..    ....-.++.+++.....+..++      .|..+|+
T Consensus       169 ~~~-l~s~~------~dg~i~vwd~~~~~~~~~--~---~~----h~~~v~~~~~~~~~l~s~s~dg------~i~~wd~  226 (445)
T 2ovr_B          169 DNI-IISGS------TDRTLKVWNAETGECIHT--L---YG----HTSTVRCMHLHEKRVVSGSRDA------TLRVWDI  226 (445)
T ss_dssp             TTE-EEEEE------TTSCEEEEETTTTEEEEE--E---CC----CSSCEEEEEEETTEEEEEETTS------EEEEEES
T ss_pred             CCE-EEEEe------CCCeEEEEECCcCcEEEE--E---CC----CCCcEEEEEecCCEEEEEeCCC------EEEEEEC
Confidence            232 22222      134688888877632211  1   00    0011124555666655555543      7999998


Q ss_pred             CCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC
Q 044435          236 NIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG  313 (378)
Q Consensus       236 ~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g  313 (378)
                      .+++.... ...  ..     .+ .....+|...++...++.+.+|.+...      ..+..+.. .. ...-+.+  +|
T Consensus       227 ~~~~~~~~~~~~--~~-----~v-~~~~~~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~-~v~~~~~--~~  289 (445)
T 2ovr_B          227 ETGQCLHVLMGH--VA-----AV-RCVQYDGRRVVSGAYDFMVKVWDPETE------TCLHTLQGHTN-RVYSLQF--DG  289 (445)
T ss_dssp             SSCCEEEEEECC--SS-----CE-EEEEECSSCEEEEETTSCEEEEEGGGT------EEEEEECCCSS-CEEEEEE--CS
T ss_pred             CCCcEEEEEcCC--cc-----cE-EEEEECCCEEEEEcCCCEEEEEECCCC------cEeEEecCCCC-ceEEEEE--CC
Confidence            87654322 211  11     11 222337777777777778899977641      22333332 11 1122222  55


Q ss_pred             CEEEEEeCCCeEEEEECCCCeE
Q 044435          314 DKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       314 ~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      ..++....++.+..||+++++.
T Consensus       290 ~~l~~~~~d~~i~i~d~~~~~~  311 (445)
T 2ovr_B          290 IHVVSGSLDTSIRVWDVETGNC  311 (445)
T ss_dssp             SEEEEEETTSCEEEEETTTCCE
T ss_pred             CEEEEEeCCCeEEEEECCCCCE
Confidence            5555555566677777666553

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.95  E-value=1.7e-10  Score=101.75  Aligned_cols=47  Identities=21%  Similarity=0.428  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHhcCCccccc-eeeecchhhhcccCChhHHHHHHhhc
Q 044435            4 WKLPLDVIIDILIRLPGKSLL-RFRCISKSFRSLIDSKDFINLHLSRS   50 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~-r~r~VcK~W~~li~~p~F~~~~~~~~   50 (378)
                      ..||+||+++||+|||+++|+ ||++|||+|++|+++|.|.+.++.+.
T Consensus        52 ~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~   99 (297)
T 2e31_A           52 AELPEPLLLRVLAELPATELVQACRLVCLRWKELVDGAPLWLLKCQQE   99 (297)
T ss_dssp             TSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHT
T ss_pred             hhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhcc
Confidence            579999999999999999999 99999999999999999999988776

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.95  E-value=1.4e-10  Score=75.36  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=37.1

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhH
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDF   42 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F   42 (378)
                      ..||+|++.+||++||++++.++++|||+|+.++.++.|
T Consensus        10 ~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~l   48 (53)
T 1fs1_A           10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   48 (53)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             HHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Confidence            469999999999999999999999999999999999876

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.82  E-value=4.6e-08  Score=97.79  Aligned_cols=200  Identities=10%  Similarity=0.006  Sum_probs=120.7

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      .+.++||.|++|..+++++.++..   .+.+..+. ..+...|++..      ....+++|++.++.|+.++.+   |. 
T Consensus       220 ~~~~yd~~t~~w~~~~~~~~~~~~---~~~~~~~~-~~g~lyv~GG~------~~~~v~~yd~~t~~W~~~~~~---~~-  285 (656)
T 1k3i_A          220 LTSSWDPSTGIVSDRTVTVTKHDM---FCPGISMD-GNGQIVVTGGN------DAKKTSLYDSSSDSWIPGPDM---QV-  285 (656)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCC---SSCEEEEC-TTSCEEEECSS------STTCEEEEEGGGTEEEECCCC---SS-
T ss_pred             EEEEEeCCCCcEEeCcccCCCCCC---ccccccCC-CCCCEEEeCCC------CCCceEEecCcCCceeECCCC---Cc-
Confidence            478999999999999877654321   11122211 12233333321      122799999999999999877   44 


Q ss_pred             ccccccCCcceee-CCeEEEEeecCCCcccceEEEEEEcCCceeeee------cCCCCCC------CCCC----------
Q 044435          198 WADHSYGGNGAFV-NGALHWLANQNQDEMINDLILAFDLNIETFYSM------PMPGFGN------EGGG----------  254 (378)
Q Consensus       198 ~~~~~~~~~~v~~-~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i------~lP~~~~------~~~~----------  254 (378)
                         .+.....+.+ +|++|.+++..........+.+||+.+++|+.+      ++|....      ....          
T Consensus       286 ---~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~  362 (656)
T 1k3i_A          286 ---ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSV  362 (656)
T ss_dssp             ---CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCE
T ss_pred             ---cccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcE
Confidence               3344556777 999999998433222335799999999999986      2332210      0000          


Q ss_pred             -----------------------------------cccceEEE----ECCeEEEEEcCCC---------cEEEEEeccCC
Q 044435          255 -----------------------------------GELSGVYV----LKGCLSLLCKYSE---------PWDLWVMKEYG  286 (378)
Q Consensus       255 -----------------------------------~~~~~l~~----~~G~L~~~~~~~~---------~l~iW~l~~~~  286 (378)
                                                         ... ..++    .+|+|+++.+...         ...|+..+.. 
T Consensus       363 ~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~-~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~-  440 (656)
T 1k3i_A          363 FQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMC-GNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPG-  440 (656)
T ss_dssp             EECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBT-CEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTT-
T ss_pred             EEecCccceeeeecCCcceeecCCccccccccCCCCCC-CceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCC-
Confidence                                               001 1222    3789999887421         1245554432 


Q ss_pred             CCcceEEEE--EecC-CCceeEEEEEEeCCCEEEEEeCC-----------CeEEEEECCCCeEEEEe
Q 044435          287 VKDSWSKLF--TMNE-NGYRVIPLAFSSRGDKVLFQKNS-----------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       287 ~~~~W~~~~--~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----------~~~~~ydl~~~~~~~v~  339 (378)
                       ...|..+.  .++. +.  ....++.++|.++++...+           ..+..||+++++|+.+.
T Consensus       441 -~~~W~~~~~~~mp~~R~--~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          441 -TSPNTVFASNGLYFART--FHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             -SCCEEEECTTCCSSCCB--SCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             -CCCeeEEccCCCCCCcc--cCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence             35798876  4554 33  2334445578855555321           24899999999999874

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=98.76  E-value=1e-06  Score=83.21  Aligned_cols=283  Identities=12%  Similarity=0.068  Sum_probs=141.4

Q ss_pred             CCCHH----HHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcccC---------CCCe--EEEEEecCC---
Q 044435            5 KLPLD----VIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSIKT---------SSNR--SLVICSDLD---   66 (378)
Q Consensus         5 ~LP~d----ll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~~~---------~~~~--~l~~~~~~~---   66 (378)
                      .||+|    |+..||+.|++++|.++.+|||+|+.+++++.+-+.........         ...+  .++......   
T Consensus        13 ~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~   92 (435)
T 1p22_A           13 ALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGLAERRGWGQYLFKNKPPDGNA   92 (435)
T ss_dssp             HTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTSCHHHHHHHHSSSGGGGCC---------
T ss_pred             HCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCcchhhhhhhhccchhhhhhccCCCCCCC
Confidence            38999    99999999999999999999999999998776544433221100         0000  000000000   


Q ss_pred             -CCcee-EEEec-------cCCCCCCCCCCCceeeccc----CccceEEeeeccceEEEeecCCcEEEEcCcccceeecC
Q 044435           67 -YNLKT-RFHSL-------SLDSLGGGDDDGSIIDLRV----NEMFDIIIGSCNGLLALKNYPKGIILLNPLTKKHRVLP  133 (378)
Q Consensus        67 -~~~~~-~~~~~-------~~~~~~~~~~~~~~~~l~~----~~~~~~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP  133 (378)
                       ..... .++.-       -...+...  ......+..    ...+ ..+...+.+++....+..+.|||..+++....-
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~W~~~--~~~~~~~~~~~~~~~~v-~~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~  169 (435)
T 1p22_A           93 PPNSFYRALYPKIIQDIETIESNWRCG--RHSLQRIHCRSETSKGV-YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRIL  169 (435)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHTTTC--CCCCCCEECCCSSCCCE-EEEECCSSEEEEEESSSCEEEEESSSCCEEEEE
T ss_pred             CchhhHHhhhhhhhcchhHHHhhhccC--CccceEEecccCCCCcE-EEEEECCCEEEEEeCCCeEEEEeCCCCeEEEEE
Confidence             00000 00000       00001110  000011110    1111 233333444555556778999999988765432


Q ss_pred             CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe
Q 044435          134 KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA  213 (378)
Q Consensus       134 ~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~  213 (378)
                      ...      ......+.+|   +.+-+.+ .      ....+.+++..++.-...  .   ..    ....-.++.+++.
T Consensus       170 ~~h------~~~v~~l~~~---~~~l~sg-~------~dg~i~vwd~~~~~~~~~--~---~~----h~~~v~~l~~~~~  224 (435)
T 1p22_A          170 TGH------TGSVLCLQYD---ERVIITG-S------SDSTVRVWDVNTGEMLNT--L---IH----HCEAVLHLRFNNG  224 (435)
T ss_dssp             CCC------SSCEEEEECC---SSEEEEE-E------TTSCEEEEESSSCCEEEE--E---CC----CCSCEEEEECCTT
T ss_pred             cCC------CCcEEEEEEC---CCEEEEE-c------CCCeEEEEECCCCcEEEE--E---cC----CCCcEEEEEEcCC
Confidence            211      1123345553   2332222 2      134688888877643211  1   00    0011123445555


Q ss_pred             EEEEeecCCCcccceEEEEEEcCCceeeee--cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcce
Q 044435          214 LHWLANQNQDEMINDLILAFDLNIETFYSM--PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSW  291 (378)
Q Consensus       214 lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i--~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W  291 (378)
                      ....+..++      .|..+|+.+..-...  .+..+..     .+ .....+|...++...++.+.+|.+...      
T Consensus       225 ~l~s~s~dg------~i~vwd~~~~~~~~~~~~~~~~~~-----~v-~~~~~~~~~l~s~~~dg~i~vwd~~~~------  286 (435)
T 1p22_A          225 MMVTCSKDR------SIAVWDMASPTDITLRRVLVGHRA-----AV-NVVDFDDKYIVSASGDRTIKVWNTSTC------  286 (435)
T ss_dssp             EEEEEETTS------CEEEEECSSSSCCEEEEEECCCSS-----CE-EEEEEETTEEEEEETTSEEEEEETTTC------
T ss_pred             EEEEeeCCC------cEEEEeCCCCCCceeeeEecCCCC-----cE-EEEEeCCCEEEEEeCCCeEEEEECCcC------
Confidence            555555442      689999876543211  1111111     11 222337777777777779999987652      


Q ss_pred             EEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          292 SKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       292 ~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      ..+..+.. ..   .+.++.-+++.++....++.+..||+++++..
T Consensus       287 ~~~~~~~~~~~---~v~~~~~~~~~l~~g~~dg~i~iwd~~~~~~~  329 (435)
T 1p22_A          287 EFVRTLNGHKR---GIACLQYRDRLVVSGSSDNTIRLWDIECGACL  329 (435)
T ss_dssp             CEEEEEECCSS---CEEEEEEETTEEEEEETTSCEEEEETTTCCEE
T ss_pred             cEEEEEcCCCC---cEEEEEeCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            23334443 22   12233335777777777888999999977643

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=98.62  E-value=7.7e-07  Score=89.37  Aligned_cols=177  Identities=10%  Similarity=0.062  Sum_probs=113.0

Q ss_pred             CcceEEEEEEcCCCcEEecC-cccCCCcc-ccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-c
Q 044435          170 VYHIEATVYGLKVNLWRRIK-NIKNFPYS-WADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-P  244 (378)
Q Consensus       170 ~~~~~~~vyss~~~~W~~~~-~~~~~p~~-~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~  244 (378)
                      .....+++|+..+++|+.++ .+   |.+ ....+..+..+.+  +|++|.+++..........+..||+.+++|+.+ +
T Consensus       409 ~~~~~v~~yd~~~~~W~~~~~~~---p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~  485 (695)
T 2zwa_A          409 YRVNEILQLSIHYDKIDMKNIEV---SSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS  485 (695)
T ss_dssp             SBCCCEEEEEECSSCEEEEECCC---CCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCC
T ss_pred             CCcCcEEEEECCCCeEEEeccCC---CCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCC
Confidence            34567999999999999987 53   210 0223445667888  999999998764332335799999999999998 6


Q ss_pred             CCCCCCCCCCcccceEEEE-CCeEEEEEcCCC-cEEEEEeccCCCCcceEEEEE---ecC-CCceeEEEEEEeC-CCEEE
Q 044435          245 MPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE-PWDLWVMKEYGVKDSWSKLFT---MNE-NGYRVIPLAFSSR-GDKVL  317 (378)
Q Consensus       245 lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~---i~~-~~~~~~~~~~~~~-g~~v~  317 (378)
                      +|....     .. ..+.. +|+|+++++... . .+|.++..  ...|+.+..   ++. +.. ...+.+..+ +.+++
T Consensus       486 ~p~~R~-----~h-~~~~~~~~~iyv~GG~~~~~-~v~~yd~~--t~~W~~~~~~g~~p~~r~~-~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          486 LSHTRF-----RH-SACSLPDGNVLILGGVTEGP-AMLLYNVT--EEIFKDVTPKDEFFQNSLV-SAGLEFDPVSKQGII  555 (695)
T ss_dssp             CSBCCB-----SC-EEEECTTSCEEEECCBCSSC-SEEEEETT--TTEEEECCCSSGGGGSCCB-SCEEEEETTTTEEEE
T ss_pred             CCCCcc-----cc-eEEEEcCCEEEEECCCCCCC-CEEEEECC--CCceEEccCCCCCCCcccc-eeEEEEeCCCCEEEE
Confidence            664322     22 45664 999999998665 4 77777753  357998775   333 321 112333333 44444


Q ss_pred             EEeC-------CCeEEEEECCCCe------EEEEeEe---CCc--ceEEee-eccccCCCC
Q 044435          318 FQKN-------SKDHCWYHLDMHR------VESFLVK---GPS--DVHVCV-DTLVSPFAE  359 (378)
Q Consensus       318 ~~~~-------~~~~~~ydl~~~~------~~~v~~~---~~~--~~~~y~-~slv~~~~~  359 (378)
                      +...       ...++.||+++++      |+.+.-.   +..  .+..+- ..|.-+.+.
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~  616 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGT  616 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCB
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCc
Confidence            4432       1359999999999      8888542   122  445555 455555443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.48  E-value=1.2e-06  Score=87.49  Aligned_cols=193  Identities=9%  Similarity=-0.009  Sum_probs=113.4

Q ss_pred             EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC----CCcceEEEEEEcCCCcEEecCcccCC
Q 044435          119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS----PVYHIEATVYGLKVNLWRRIKNIKNF  194 (378)
Q Consensus       119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~----~~~~~~~~vyss~~~~W~~~~~~~~~  194 (378)
                      +..+||.+++|..++++|...     .  ..++.+..+...|++......    ......+++|+..+++|+.+..+   
T Consensus       168 ~~~~dp~~~~W~~~~~~P~~~-----~--~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---  237 (656)
T 1k3i_A          168 YTAPQPGLGRWGPTIDLPIVP-----A--AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---  237 (656)
T ss_dssp             CCCCCTTSCEEEEEEECSSCC-----S--EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---
T ss_pred             cccCCCCCCeeeeeccCCCCc-----e--eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---
Confidence            455699999999988777521     1  222333233344443322111    11234789999999999998776   


Q ss_pred             CccccccccCCc-ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEE
Q 044435          195 PYSWADHSYGGN-GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLC  271 (378)
Q Consensus       195 p~~~~~~~~~~~-~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~  271 (378)
                      |.  ........ .+..||+||.+++...     ..+..||+.+++|..+ ++|...     ... ..+.+ +|+|+++.
T Consensus       238 ~~--~~~~~~~~~~~~~~g~lyv~GG~~~-----~~v~~yd~~t~~W~~~~~~~~~R-----~~~-s~~~~~dg~iyv~G  304 (656)
T 1k3i_A          238 VT--KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVAR-----GYQ-SSATMSDGRVFTIG  304 (656)
T ss_dssp             EC--SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCC-----SSC-EEEECTTSCEEEEC
T ss_pred             CC--CCCCccccccCCCCCCEEEeCCCCC-----CceEEecCcCCceeECCCCCccc-----ccc-ceEEecCCeEEEEe
Confidence            44  22222222 2346899999998654     2699999999999988 555432     233 56777 99999999


Q ss_pred             cC-CC---cEEEEEeccCCCCcceEEEEEe-----cCC-C-----c--eeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          272 KY-SE---PWDLWVMKEYGVKDSWSKLFTM-----NEN-G-----Y--RVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       272 ~~-~~---~l~iW~l~~~~~~~~W~~~~~i-----~~~-~-----~--~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      +. ++   .-.+|..+..  ..+|+.+...     ... .     .  ....++- .+|. ++.......+..||+++++
T Consensus       305 G~~~~~~~~~~~e~yd~~--t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg-~~g~-~~~~~~~~~v~~yd~~~~~  380 (656)
T 1k3i_A          305 GSWSGGVFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGW-KKGS-VFQAGPSTAMNWYYTSGSG  380 (656)
T ss_dssp             CCCCSSSCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEEC-GGGC-EEECCSSSEEEEEECSTTC
T ss_pred             CcccCCcccccceEeCCC--CCcceeCCCccccccccccccceeecCCceEEEEC-CCCc-EEEecCccceeeeecCCcc
Confidence            83 32   1234444432  2579876221     111 0     0  0111111 1333 3333334569999999999


Q ss_pred             EEEE
Q 044435          335 VESF  338 (378)
Q Consensus       335 ~~~v  338 (378)
                      |...
T Consensus       381 w~~~  384 (656)
T 1k3i_A          381 DVKS  384 (656)
T ss_dssp             EEEE
T ss_pred             eeec
Confidence            8754

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.66  E-value=1.1e-05  Score=70.40  Aligned_cols=47  Identities=21%  Similarity=0.330  Sum_probs=43.1

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhhcc
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSRSI   51 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~~~   51 (378)
                      .||+|++..||+.|++++|+++.+|||+||.+.+++..=+.+..+..
T Consensus         7 ~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~rd~   53 (312)
T 3l2o_B            7 RLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDL   53 (312)
T ss_dssp             HSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHSSG
T ss_pred             hCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccchHHHHHHhccC
Confidence            59999999999999999999999999999999999988877776653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=97.05  E-value=9.2e-05  Score=67.11  Aligned_cols=38  Identities=21%  Similarity=0.292  Sum_probs=35.0

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChh
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKD   41 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~   41 (378)
                      ..||+|++.+||.+|+.+++.+++.|||+|+.++.+|.
T Consensus        10 ~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~   47 (336)
T 2ast_B           10 DSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDES   47 (336)
T ss_dssp             SSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCST
T ss_pred             hhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCch
Confidence            46999999999999999999999999999999987655

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=96.90  E-value=0.23  Score=44.90  Aligned_cols=194  Identities=12%  Similarity=0.076  Sum_probs=107.6

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~  188 (378)
                      +|+....+..+.|||..+++....-.....    ......+.+.+..+.+-+.+ .      ....+.+++..+...+..
T Consensus        88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~l~s~-~------~d~~i~iwd~~~~~~~~~  156 (383)
T 3ei3_B           88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGP----GDAITGMKFNQFNTNQLFVS-S------IRGATTLRDFSGSVIQVF  156 (383)
T ss_dssp             EEEEEEBTSCEEEEETTSTTCEEEECCCST----TCBEEEEEEETTEEEEEEEE-E------TTTEEEEEETTSCEEEEE
T ss_pred             EEEEEcCCCeEEEEeCCCcccceeeecCCc----CCceeEEEeCCCCCCEEEEE-e------CCCEEEEEECCCCceEEE
Confidence            444444566788999988776544332111    22344566665433333322 1      134688888887665554


Q ss_pred             CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-
Q 044435          189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-  266 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-  266 (378)
                      ...   ..  .......-...-+|.....+..+.      .|..+|+..+....+.....       .+..+... +|. 
T Consensus       157 ~~~---~~--~~~~v~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~h~~-------~v~~~~~~~~~~~  218 (383)
T 3ei3_B          157 AKT---DS--WDYWYCCVDVSVSRQMLATGDSTG------RLLLLGLDGHEIFKEKLHKA-------KVTHAEFNPRCDW  218 (383)
T ss_dssp             ECC---CC--SSCCEEEEEEETTTTEEEEEETTS------EEEEEETTSCEEEEEECSSS-------CEEEEEECSSCTT
T ss_pred             ecc---CC--CCCCeEEEEECCCCCEEEEECCCC------CEEEEECCCCEEEEeccCCC-------cEEEEEECCCCCC
Confidence            322   10  000000111223566555555442      79999997665555432211       11033333 455 


Q ss_pred             EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeE
Q 044435          267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      +.+....++.+.+|.+.......  .....+.. ..  ..-+.+.+ +|..++....++.+..||+++.+.
T Consensus       219 ~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~--v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~  285 (383)
T 3ei3_B          219 LMATSSVDATVKLWDLRNIKDKN--SYIAEMPHEKP--VNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK  285 (383)
T ss_dssp             EEEEEETTSEEEEEEGGGCCSTT--CEEEEEECSSC--EEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred             EEEEEeCCCEEEEEeCCCCCccc--ceEEEecCCCc--eEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence            77777777799999998643212  22233333 22  55677888 898787787788899999987653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=96.83  E-value=0.2  Score=44.71  Aligned_cols=196  Identities=8%  Similarity=-0.036  Sum_probs=103.0

Q ss_pred             cceEEEeec-----CCcEEEEcCcccceeec-CCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          107 NGLLALKNY-----PKGIILLNPLTKKHRVL-PKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       107 ~GLl~l~~~-----~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      +|++.+...     ...+.++||.|++...- ......... .....++.++.   ....+.. .     ....+.+++.
T Consensus         2 ~g~~v~neg~~g~~~~~l~~~d~~t~~~~~~i~~~~n~~~l-g~~~~~i~~~~---~~lyv~~-~-----~~~~v~viD~   71 (328)
T 3dsm_A            2 SGLFITNEGNFQYSNATLSYYDPATCEVENEVFYRANGFKL-GDVAQSMVIRD---GIGWIVV-N-----NSHVIFAIDI   71 (328)
T ss_dssp             CEEEEEECCCTTSCCBEEEEEETTTTEEECSHHHHHHSSCC-BSCEEEEEEET---TEEEEEE-G-----GGTEEEEEET
T ss_pred             CeEEEEecCCCCCCCceEEEEECCCCEEhhhhHhhhcCccc-CccceEEEEEC---CEEEEEE-c-----CCCEEEEEEC
Confidence            455555532     56789999999887531 110000000 01112333432   2222221 1     2357888998


Q ss_pred             CCCcE-EecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcc
Q 044435          181 KVNLW-RRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGE  256 (378)
Q Consensus       181 ~~~~W-~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~  256 (378)
                      .++.- ++++..   .        ...++.  -+|.+|+.....      ..|.++|+.+.+.. .++++......  ..
T Consensus        72 ~t~~~~~~i~~~---~--------~p~~i~~~~~g~lyv~~~~~------~~v~~iD~~t~~~~~~i~~g~~~~~~--~~  132 (328)
T 3dsm_A           72 NTFKEVGRITGF---T--------SPRYIHFLSDEKAYVTQIWD------YRIFIINPKTYEITGYIECPDMDMES--GS  132 (328)
T ss_dssp             TTCCEEEEEECC---S--------SEEEEEEEETTEEEEEEBSC------SEEEEEETTTTEEEEEEECTTCCTTT--CB
T ss_pred             cccEEEEEcCCC---C--------CCcEEEEeCCCeEEEEECCC------CeEEEEECCCCeEEEEEEcCCccccC--CC
Confidence            87654 223211   0        111233  478888876433      37999999988765 45665411100  01


Q ss_pred             cceEEEECCeEEEEEcC-CCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----------C
Q 044435          257 LSGVYVLKGCLSLLCKY-SEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----------K  323 (378)
Q Consensus       257 ~~~l~~~~G~L~~~~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----------~  323 (378)
                      ...++..+|+|++.... ...+.++-++.    .  ..+..++. ..  ..-+.+.++|. +++....           .
T Consensus       133 p~~i~~~~~~lyv~~~~~~~~v~viD~~t----~--~~~~~i~~g~~--p~~i~~~~dG~-l~v~~~~~~~~~~~~~~~~  203 (328)
T 3dsm_A          133 TEQMVQYGKYVYVNCWSYQNRILKIDTET----D--KVVDELTIGIQ--PTSLVMDKYNK-MWTITDGGYEGSPYGYEAP  203 (328)
T ss_dssp             CCCEEEETTEEEEEECTTCCEEEEEETTT----T--EEEEEEECSSC--BCCCEECTTSE-EEEEBCCBCTTCSSCBCCC
T ss_pred             cceEEEECCEEEEEcCCCCCEEEEEECCC----C--eEEEEEEcCCC--ccceEEcCCCC-EEEEECCCccCCccccCCc
Confidence            11445578899998753 44655554443    1  22334443 22  22355566787 5554432           4


Q ss_pred             eEEEEECCCCeEEE-EeE
Q 044435          324 DHCWYHLDMHRVES-FLV  340 (378)
Q Consensus       324 ~~~~ydl~~~~~~~-v~~  340 (378)
                      .++.+|++++++.+ +.+
T Consensus       204 ~v~~id~~t~~v~~~~~~  221 (328)
T 3dsm_A          204 SLYRIDAETFTVEKQFKF  221 (328)
T ss_dssp             EEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCeEEEEEec
Confidence            69999999998763 443

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.27  Score=44.02  Aligned_cols=192  Identities=9%  Similarity=0.071  Sum_probs=103.6

Q ss_pred             EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435          110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~  188 (378)
                      |+....+..+.|||...+....+.....+    ......+.+.+.. +.+-+ ....      ...+.+|+..++.|...
T Consensus        26 l~~~~~dg~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~~~~~~~~~l~-s~~~------dg~v~iwd~~~~~~~~~   94 (379)
T 3jrp_A           26 LATCSSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILA-SCSY------DGKVLIWKEENGRWSQI   94 (379)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEE-EEET------TSCEEEEEEETTEEEEE
T ss_pred             EEEEECCCcEEEEecCCCcceeeeEecCC----CCcEEEEEeCCCCCCCEEE-Eecc------CCEEEEEEcCCCceeEe
Confidence            33333556678888764333222211111    1123345554332 33333 2221      24688889888887665


Q ss_pred             CcccCCCccccccccCCcceee--C--CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE
Q 044435          189 KNIKNFPYSWADHSYGGNGAFV--N--GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL  263 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~  263 (378)
                      ...   ..  .  ...-.++.+  +  |.+...+..+.      .|..+|+.+..- ..+.+..+..     .+..+...
T Consensus        95 ~~~---~~--~--~~~v~~~~~~~~~~~~~l~~~~~d~------~i~v~d~~~~~~~~~~~~~~~~~-----~v~~~~~~  156 (379)
T 3jrp_A           95 AVH---AV--H--SASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAI-----GVNSASWA  156 (379)
T ss_dssp             EEE---CC--C--SSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCTTSCCCEEEEECCTT-----CEEEEEEC
T ss_pred             eee---cC--C--CcceEEEEeCCCCCCCEEEEecCCC------cEEEEecCCCCceeeEEecCCCC-----ceEEEEEc
Confidence            443   11  0  001112222  2  55555555442      788899877522 2222211111     01022222


Q ss_pred             --------------CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeC---CCEEEEEeCCCeE
Q 044435          264 --------------KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSR---GDKVLFQKNSKDH  325 (378)
Q Consensus       264 --------------~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~---g~~v~~~~~~~~~  325 (378)
                                    +|.+.++...++.+.+|.+...  ...|.....+.. .. ...-+.+.++   |..++....++.+
T Consensus       157 ~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i  233 (379)
T 3jrp_A          157 PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSD--AQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTC  233 (379)
T ss_dssp             CCC----------CTTCEEEEEETTSCEEEEEEETT--TTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCE
T ss_pred             CccccccccccCCCCCCEEEEEeCCCeEEEEEecCC--CcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEE
Confidence                          4777777777789999998753  245777777765 32 2556777787   7767777777789


Q ss_pred             EEEECCCC
Q 044435          326 CWYHLDMH  333 (378)
Q Consensus       326 ~~ydl~~~  333 (378)
                      ..||+++.
T Consensus       234 ~iwd~~~~  241 (379)
T 3jrp_A          234 IIWTQDNE  241 (379)
T ss_dssp             EEEEESST
T ss_pred             EEEeCCCC
Confidence            99998876

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=96.33  E-value=0.25  Score=44.22  Aligned_cols=205  Identities=11%  Similarity=0.085  Sum_probs=105.6

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcE-E
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLW-R  186 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W-~  186 (378)
                      +|+....+..+.|||..++++..+-.....    ......+.+.+.. +.+-+++ .      ....+.+|+..++.- .
T Consensus        71 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~~~-~------~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           71 ILASCSYDGKVLIWKEENGRWSQIAVHAVH----SASVNSVQWAPHEYGPLLLVA-S------SDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             EEEEEETTSCEEEEEEETTEEEEEEEECCC----SSCEEEEEECCGGGCSEEEEE-E------TTSEEEEEECCTTSCCC
T ss_pred             EEEEeccCCEEEEEEcCCCceeEeeeecCC----CcceEEEEeCCCCCCCEEEEe-c------CCCcEEEEecCCCCcee
Confidence            344445667789999988875444322221    1234456666653 3333333 2      134677888776521 1


Q ss_pred             ecCcccCCCccccccccCCc--------ceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCc
Q 044435          187 RIKNIKNFPYSWADHSYGGN--------GAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGG  255 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~--------~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~  255 (378)
                      ......+ ........+...        ...-+|.+...+..+.      .|..||+.+.  .+..+ .+..+...    
T Consensus       140 ~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~h~~~----  208 (379)
T 3jrp_A          140 PIIIDAH-AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDW----  208 (379)
T ss_dssp             EEEEECC-TTCEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSC----
T ss_pred             eEEecCC-CCceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEEEecccCc----
Confidence            1100000 000000000000        0001466666655543      6888887643  34333 33322211    


Q ss_pred             ccceEEEE-C---CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          256 ELSGVYVL-K---GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       256 ~~~~l~~~-~---G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                      -. .+... +   |.+.+....++.+.||.+....  ..+... .+..  ......-+.+.++|..++....++.+..||
T Consensus       209 v~-~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~-~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          209 VR-DVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ--GPWKKT-LLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             EE-EEEECCCCSSSEEEEEEETTSCEEEEEESSTT--SCCEEE-ESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             Ee-EEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC--ccceee-eeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            11 33333 4   6777777777899999998632  223222 2222  122355677788999788777788899999


Q ss_pred             CC-CCeEEEEe
Q 044435          330 LD-MHRVESFL  339 (378)
Q Consensus       330 l~-~~~~~~v~  339 (378)
                      ++ .++|+.+.
T Consensus       285 ~~~~~~~~~~~  295 (379)
T 3jrp_A          285 ENLEGKWEPAG  295 (379)
T ss_dssp             EEETTEEEEEE
T ss_pred             CCCCCcccccc
Confidence            88 56777774

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=96.30  E-value=0.42  Score=48.08  Aligned_cols=188  Identities=8%  Similarity=0.067  Sum_probs=102.3

Q ss_pred             ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCC-CCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCccc
Q 044435          114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGS-DDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIK  192 (378)
Q Consensus       114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~-~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~  192 (378)
                      ..+..+.|||..++....+.....+    ......+.+.+.. +.+-+ ....      ...+.+++..++.|...... 
T Consensus        28 ~~dg~I~vwd~~~~~~~~~~~l~~h----~~~V~~l~~s~~~~~~~l~-s~s~------Dg~I~vwd~~~~~~~~~~~~-   95 (753)
T 3jro_A           28 SSDKTIKIFEVEGETHKLIDTLTGH----EGPVWRVDWAHPKFGTILA-SCSY------DGKVLIWKEENGRWSQIAVH-   95 (753)
T ss_dssp             ETTTEEEEEEEETTEEEEEEEECCC----SSCEEEEEECCTTSCSEEE-EEET------TSCEEEEEEETTEEEEEEEE-
T ss_pred             ECCCcEEEEecCCCCCccceeccCC----cCceEEEEecCCCCCCEEE-EEeC------CCeEEEEECCCCcccccccc-
Confidence            3445567777664433333222211    1234456665543 33333 3221      34688888888887665433 


Q ss_pred             CCCccccccccCCcceee--C--CeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE----
Q 044435          193 NFPYSWADHSYGGNGAFV--N--GALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL----  263 (378)
Q Consensus       193 ~~p~~~~~~~~~~~~v~~--~--G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~----  263 (378)
                        ..  ..  ..-.++.+  +  |.+...+..++      .|..+|+.+..-. .+.+..+..     .+..+...    
T Consensus        96 --~~--h~--~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~~~~~~~~~~~~~~-----~v~~l~~~p~~~  158 (753)
T 3jro_A           96 --AV--HS--ASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKENGTTSPIIIDAHAI-----GVNSASWAPATI  158 (753)
T ss_dssp             --CC--CS--SCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSSSCCCCEEEECCSS-----CEEEEEECCCC-
T ss_pred             --cC--CC--CCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecCCCcceeEeecCCC-----ceEEEEecCccc
Confidence              11  10  01112222  2  55665555543      7888998766221 111111111     01022222    


Q ss_pred             ----------CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeC---CCEEEEEeCCCeEEEEE
Q 044435          264 ----------KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSR---GDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       264 ----------~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~---g~~v~~~~~~~~~~~yd  329 (378)
                                +|.+.++...++.+.+|.+....  ..+.....+.. .. ...-+.+.++   |..++....++.+..||
T Consensus       159 ~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~--~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd  235 (753)
T 3jro_A          159 EEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA--QTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT  235 (753)
T ss_dssp             --------CGGGCCEEEEETTSCEEEEEEETTT--TEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred             ccccccccCCCCCEEEEEECCCeEEEEeccCCc--ccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence                      46777777777899999998632  45776666665 32 2566777777   77677777777899999


Q ss_pred             CCCC
Q 044435          330 LDMH  333 (378)
Q Consensus       330 l~~~  333 (378)
                      ++++
T Consensus       236 ~~~~  239 (753)
T 3jro_A          236 QDNE  239 (753)
T ss_dssp             ESSS
T ss_pred             CCCC
Confidence            9876

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=96.27  E-value=0.00066  Score=66.50  Aligned_cols=33  Identities=15%  Similarity=0.261  Sum_probs=29.3

Q ss_pred             CCCCHHHHHHHHhcCC-ccccceeeecchhhhcc
Q 044435            4 WKLPLDVIIDILIRLP-GKSLLRFRCISKSFRSL   36 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP-~~sl~r~r~VcK~W~~l   36 (378)
                      ..||||++.+||.+|| .+++.+++.|||+|+.+
T Consensus         7 ~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~   40 (594)
T 2p1m_B            7 LSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEI   40 (594)
T ss_dssp             ---CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHH
T ss_pred             hhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHh
Confidence            4699999999999999 99999999999999987

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=96.22  E-value=0.56  Score=41.03  Aligned_cols=199  Identities=9%  Similarity=0.016  Sum_probs=106.9

Q ss_pred             EeeeccceEEEeecCCcEEEEcCcccceeec-CCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVL-PKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      +.-+.+|-+++......+.|||..+++.... .......+  ......+.+.+.. .+-+++ .      ....+.+|+.
T Consensus        57 ~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~-~~l~~~-~------~d~~i~~~d~  126 (337)
T 1gxr_A           57 VTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPDG-CTLIVG-G------EASTLSIWDL  126 (337)
T ss_dssp             EEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCT--TSBEEEEEECTTS-SEEEEE-E------SSSEEEEEEC
T ss_pred             EEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCC--CCcEEEEEEcCCC-CEEEEE-c------CCCcEEEEEC
Confidence            3334456555444467788999877653211 11110011  2234456666643 332222 2      1346889998


Q ss_pred             CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCccc
Q 044435          181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGEL  257 (378)
Q Consensus       181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~  257 (378)
                      .++........   ..  ..  ..-..+.+  +|.....+..++      .|..+|+.+.+.... ...  ..     .+
T Consensus       127 ~~~~~~~~~~~---~~--~~--~~i~~~~~~~~~~~l~~~~~dg------~v~~~d~~~~~~~~~~~~~--~~-----~i  186 (337)
T 1gxr_A          127 AAPTPRIKAEL---TS--SA--PACYALAISPDSKVCFSCCSDG------NIAVWDLHNQTLVRQFQGH--TD-----GA  186 (337)
T ss_dssp             CCC--EEEEEE---EC--SS--SCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCC--SS-----CE
T ss_pred             CCCCcceeeec---cc--CC--CceEEEEECCCCCEEEEEeCCC------cEEEEeCCCCceeeeeecc--cC-----ce
Confidence            88765433222   10  00  00011222  566555555442      689999987654332 221  11     11


Q ss_pred             ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      ..+... +|...++...++.+.+|.+...      .....+.. ..  ..-+.+.++|..++....++.+..||+++.+.
T Consensus       187 ~~~~~~~~~~~l~~~~~dg~i~~~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~  258 (337)
T 1gxr_A          187 SCIDISNDGTKLWTGGLDNTVRSWDLREG------RQLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK  258 (337)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEETTTT------EEEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCE
T ss_pred             EEEEECCCCCEEEEEecCCcEEEEECCCC------ceEeeecCCCc--eEEEEECCCCCEEEEEcCCCcEEEEECCCCCe
Confidence            033333 6777777777779999987652      22333333 22  45577778899888887778899999998876


Q ss_pred             EEE
Q 044435          336 ESF  338 (378)
Q Consensus       336 ~~v  338 (378)
                      ..+
T Consensus       259 ~~~  261 (337)
T 1gxr_A          259 YQL  261 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            655

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.21  E-value=0.00071  Score=66.27  Aligned_cols=34  Identities=12%  Similarity=0.061  Sum_probs=31.6

Q ss_pred             CCCCCHHHHHHHHhcC-Cccccceeeecchhhhcc
Q 044435            3 TWKLPLDVIIDILIRL-PGKSLLRFRCISKSFRSL   36 (378)
Q Consensus         3 ~~~LP~dll~~IL~rL-P~~sl~r~r~VcK~W~~l   36 (378)
                      ...||||++.+||.+| |.+++.+++.|||+|+.+
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~   47 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKI   47 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHH
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHh
Confidence            3569999999999999 899999999999999887

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=96.04  E-value=0.57  Score=41.77  Aligned_cols=192  Identities=11%  Similarity=0.079  Sum_probs=99.1

Q ss_pred             ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435          114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN  193 (378)
Q Consensus       114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~  193 (378)
                      .....+.|||..++++..+-....+    ......+.+.+. +.+-+.+ .      ....+.+|+..++.+......  
T Consensus        27 ~~d~~v~i~~~~~~~~~~~~~~~~h----~~~v~~~~~~~~-~~~l~~~-~------~dg~i~vwd~~~~~~~~~~~~--   92 (372)
T 1k8k_C           27 PNNHEVHIYEKSGNKWVQVHELKEH----NGQVTGVDWAPD-SNRIVTC-G------TDRNAYVWTLKGRTWKPTLVI--   92 (372)
T ss_dssp             CSSSEEEEEEEETTEEEEEEEEECC----SSCEEEEEEETT-TTEEEEE-E------TTSCEEEEEEETTEEEEEEEC--
T ss_pred             eCCCEEEEEeCCCCcEEeeeeecCC----CCcccEEEEeCC-CCEEEEE-c------CCCeEEEEECCCCeeeeeEEe--
Confidence            3566788889888853322222211    123445666663 3333322 1      124578888888776544221  


Q ss_pred             CCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCce-e---eeecCCCCCCCCCCcccceEEEE-CCe
Q 044435          194 FPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIET-F---YSMPMPGFGNEGGGGELSGVYVL-KGC  266 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~---~~i~lP~~~~~~~~~~~~~l~~~-~G~  266 (378)
                       ..  .  ...-..+.  -+|.....+..+.      .|..+|+.+.. +   ..+..+...      .+..+... +|.
T Consensus        93 -~~--~--~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~~~~~~~------~i~~~~~~~~~~  155 (372)
T 1k8k_C           93 -LR--I--NRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHIKKPIRS------TVLSLDWHPNSV  155 (372)
T ss_dssp             -CC--C--SSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEECTTCCS------CEEEEEECTTSS
T ss_pred             -ec--C--CCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeeeecccCC------CeeEEEEcCCCC
Confidence             00  0  00001122  2465555555442      57777766543 2   222222111      11033333 677


Q ss_pred             EEEEEcCCCcEEEEEeccCCC-----Ccc-------eEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          267 LSLLCKYSEPWDLWVMKEYGV-----KDS-------WSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       267 L~~~~~~~~~l~iW~l~~~~~-----~~~-------W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      +.++...++.+.+|.+.....     ...       -..+..+........-+.+.++|..++....++.+..||+++.+
T Consensus       156 ~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  235 (372)
T 1k8k_C          156 LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKM  235 (372)
T ss_dssp             EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTT
T ss_pred             EEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence            777777777999998642110     011       22333333311125567777888878778778889999998766


Q ss_pred             EE
Q 044435          335 VE  336 (378)
Q Consensus       335 ~~  336 (378)
                      ..
T Consensus       236 ~~  237 (372)
T 1k8k_C          236 AV  237 (372)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=96.03  E-value=0.87  Score=41.53  Aligned_cols=195  Identities=11%  Similarity=0.060  Sum_probs=106.5

Q ss_pred             eeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          103 IGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       103 ~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      ++..++.++....+..+.|||..+++...+-....     ......+.+.+. +.+-+++ .      ....+.+|+..+
T Consensus        99 ~~~s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~-----~~~v~~v~~s~~-~~~l~~~-~------~dg~i~iwd~~~  165 (401)
T 4aez_A           99 LDWSNLNVVAVALERNVYVWNADSGSVSALAETDE-----STYVASVKWSHD-GSFLSVG-L------GNGLVDIYDVES  165 (401)
T ss_dssp             EEECTTSEEEEEETTEEEEEETTTCCEEEEEECCT-----TCCEEEEEECTT-SSEEEEE-E------TTSCEEEEETTT
T ss_pred             EeecCCCEEEEECCCeEEEeeCCCCcEeEeeecCC-----CCCEEEEEECCC-CCEEEEE-C------CCCeEEEEECcC
Confidence            33334555555567789999999998766543321     122445666663 3333332 1      124688888877


Q ss_pred             CcEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435          183 NLWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       183 ~~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      +.-.. ....          ...-..+.++|.+...+..++      .|..+|+....-....+..+..     .+..+.
T Consensus       166 ~~~~~~~~~~----------~~~v~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~-----~v~~~~  224 (401)
T 4aez_A          166 QTKLRTMAGH----------QARVGCLSWNRHVLSSGSRSG------AIHHHDVRIANHQIGTLQGHSS-----EVCGLA  224 (401)
T ss_dssp             CCEEEEECCC----------SSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSS-----CEEEEE
T ss_pred             CeEEEEecCC----------CCceEEEEECCCEEEEEcCCC------CEEEEecccCcceeeEEcCCCC-----CeeEEE
Confidence            64322 1111          011124555777666666553      7999998743222222211111     110233


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCeEEEEECCCCeEEE
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKDHCWYHLDMHRVES  337 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~~~~ydl~~~~~~~  337 (378)
                      .. +|.+.++...++.+.+|-+...      .....+.........+.+.++|..++...   .++.+..||+++++...
T Consensus       225 ~~~~~~~l~s~~~d~~v~iwd~~~~------~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~  298 (401)
T 4aez_A          225 WRSDGLQLASGGNDNVVQIWDARSS------IPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVN  298 (401)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTCS------SEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEE
T ss_pred             EcCCCCEEEEEeCCCeEEEccCCCC------CccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEE
Confidence            33 6777777777789999988752      12233332111245577777665455543   36679999998876443

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=95.96  E-value=0.88  Score=41.05  Aligned_cols=197  Identities=10%  Similarity=0.010  Sum_probs=97.3

Q ss_pred             EeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435          102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK  181 (378)
Q Consensus       102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~  181 (378)
                      .....+|.+.+......++.+|+.|++.+.--..+..... .+   .  .+   +. .|+...      ....+..|+..
T Consensus        98 ~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~-~p---~--~~---~~-~v~v~~------~~g~l~~~d~~  161 (376)
T 3q7m_A           98 GVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALS-RP---V--VS---DG-LVLIHT------SNGQLQALNEA  161 (376)
T ss_dssp             EEEEETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCS-CC---E--EE---TT-EEEEEC------TTSEEEEEETT
T ss_pred             CceEeCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEc-CC---E--EE---CC-EEEEEc------CCCeEEEEECC
Confidence            3445678887777777899999999875432111111100 10   1  11   12 222221      13368888887


Q ss_pred             CC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCC---
Q 044435          182 VN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGG---  253 (378)
Q Consensus       182 ~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~---  253 (378)
                      ++  .|+.....   +.  ........++..+|.+|.-...       ..+.+||..+++....   ..|.......   
T Consensus       162 tG~~~W~~~~~~---~~--~~~~~~~~~~~~~~~v~~g~~~-------g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~  229 (376)
T 3q7m_A          162 DGAVKWTVNLDM---PS--LSLRGESAPTTAFGAAVVGGDN-------GRVSAVLMEQGQMIWQQRISQATGSTEIDRLS  229 (376)
T ss_dssp             TCCEEEEEECCC----------CCCCCCEEETTEEEECCTT-------TEEEEEETTTCCEEEEEECCC-----------
T ss_pred             CCcEEEEEeCCC---Cc--eeecCCCCcEEECCEEEEEcCC-------CEEEEEECCCCcEEEEEecccCCCCccccccc
Confidence            65  58875433   21  1111223456678877764332       2799999876654332   3232211000   


Q ss_pred             CcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          254 GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       254 ~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      .... .....+|.+++... .+.+..+..+.  .+..|...    ...  .....+  +++.|++...+..++++|.+++
T Consensus       230 ~~~~-~p~~~~~~v~~~~~-~g~l~~~d~~t--G~~~w~~~----~~~--~~~~~~--~~~~l~~~~~~g~l~~~d~~tG  297 (376)
T 3q7m_A          230 DVDT-TPVVVNGVVFALAY-NGNLTALDLRS--GQIMWKRE----LGS--VNDFIV--DGNRIYLVDQNDRVMALTIDGG  297 (376)
T ss_dssp             CCCC-CCEEETTEEEEECT-TSCEEEEETTT--CCEEEEEC----CCC--EEEEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred             ccCC-CcEEECCEEEEEec-CcEEEEEECCC--CcEEeecc----CCC--CCCceE--ECCEEEEEcCCCeEEEEECCCC
Confidence            0011 22345677766543 22333322222  22346532    111  111222  3555888877777999999998


Q ss_pred             eEEEE
Q 044435          334 RVESF  338 (378)
Q Consensus       334 ~~~~v  338 (378)
                      +..+-
T Consensus       298 ~~~w~  302 (376)
T 3q7m_A          298 VTLWT  302 (376)
T ss_dssp             CEEEE
T ss_pred             cEEEe
Confidence            86554

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=95.92  E-value=0.24  Score=42.28  Aligned_cols=113  Identities=12%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             eeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435          208 AFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG  286 (378)
Q Consensus       208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~  286 (378)
                      .+.+|.+|.-++..+.    ..|..+|+.+++- ..+++|....     .. .++..+++|+++...+..  +|+.+-  
T Consensus        27 ~~~~~~LyestG~~g~----S~v~~vD~~tgkv~~~~~l~~~~f-----ge-Gi~~~~~~ly~ltw~~~~--v~v~D~--   92 (243)
T 3mbr_X           27 FYLRGHLYESTGETGR----SSVRKVDLETGRILQRAEVPPPYF-----GA-GIVAWRDRLIQLTWRNHE--GFVYDL--   92 (243)
T ss_dssp             EEETTEEEEEECCTTS----CEEEEEETTTCCEEEEEECCTTCC-----EE-EEEEETTEEEEEESSSSE--EEEEET--
T ss_pred             EEECCEEEEECCCCCC----ceEEEEECCCCCEEEEEeCCCCcc-----ee-EEEEeCCEEEEEEeeCCE--EEEEEC--
Confidence            3446777776665432    3899999998766 4458876432     22 567778999999765554  444543  


Q ss_pred             CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE-EEEeE
Q 044435          287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV-ESFLV  340 (378)
Q Consensus       287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~-~~v~~  340 (378)
                        .+-.++.+++. ..    ..++..+|+.+++..++.++..+|++|.+. +.|.+
T Consensus        93 --~tl~~~~ti~~~~~----Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           93 --ATLTPRARFRYPGE----GWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             --TTTEEEEEEECSSC----CCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             --CcCcEEEEEeCCCC----ceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence              23556667776 32    345556777677777777899999999764 44443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=95.79  E-value=0.82  Score=39.33  Aligned_cols=201  Identities=11%  Similarity=0.064  Sum_probs=106.1

Q ss_pred             eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|.+.+.+ ....+.++|+..+....++....... ......++.+++..+...|..  .    .....+.+|+....
T Consensus        38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~-~~~~p~~i~~~~~~g~l~v~~--~----~~~~~i~~~d~~g~  110 (286)
T 1q7f_A           38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDS-QLLYPNRVAVVRNSGDIIVTE--R----SPTHQIQIYNQYGQ  110 (286)
T ss_dssp             CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTT-CBSSEEEEEEETTTTEEEEEE--C----GGGCEEEEECTTSC
T ss_pred             CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcc-cccCceEEEEEcCCCeEEEEc--C----CCCCEEEEECCCCc
Confidence            3456666554 45678899988665555553221110 012344666654444332221  1    11346778885433


Q ss_pred             cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      .-+.+...   ..      ....++.+  +|.+|+.....      ..|..||...+....+..+....     .+..++
T Consensus       111 ~~~~~~~~---~~------~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~~~~~-----~p~~i~  170 (286)
T 1q7f_A          111 FVRKFGAT---IL------QHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLE-----FPNGVV  170 (286)
T ss_dssp             EEEEECTT---TC------SCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCS-----SEEEEE
T ss_pred             EEEEecCc---cC------CCceEEEEeCCCCEEEEECCC------CEEEEEcCCCCEEEEeCCCCccC-----CcEEEE
Confidence            32333211   00      01123333  68877655433      37999998776666664432221     111344


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeC-CC-eEEEEECCCCeEE
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKN-SK-DHCWYHLDMHRVE  336 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~-~~-~~~~ydl~~~~~~  336 (378)
                      .. +|+|++.......+.+|..+.     ..  +..+..  ......-+++.++|. +++... +. .+..||.+++.++
T Consensus       171 ~~~~g~l~v~~~~~~~i~~~~~~g-----~~--~~~~~~~g~~~~p~~i~~d~~G~-l~v~~~~~~~~i~~~~~~g~~~~  242 (286)
T 1q7f_A          171 VNDKQEIFISDNRAHCVKVFNYEG-----QY--LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLIS  242 (286)
T ss_dssp             ECSSSEEEEEEGGGTEEEEEETTC-----CE--EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEE
T ss_pred             ECCCCCEEEEECCCCEEEEEcCCC-----CE--EEEEccCCccCCCcEEEECCCCC-EEEEeCCCCEEEEEECCCCCEEE
Confidence            44 689888776666777775432     11  223332  222244566667887 555543 43 7999999888777


Q ss_pred             EEeE
Q 044435          337 SFLV  340 (378)
Q Consensus       337 ~v~~  340 (378)
                      .+..
T Consensus       243 ~~~~  246 (286)
T 1q7f_A          243 ALES  246 (286)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            7754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=95.67  E-value=1.2  Score=40.21  Aligned_cols=191  Identities=12%  Similarity=0.035  Sum_probs=103.4

Q ss_pred             Eeeeccce-EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435          102 IIGSCNGL-LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG  179 (378)
Q Consensus       102 ~~~s~~GL-l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys  179 (378)
                      +.-+.+|- +++.. ....+.+||+.+++....-....       ....+.+++... +-++. .     .....+.+|+
T Consensus        37 ~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~v~~~~~spdg~-~l~~~-~-----~~~~~v~v~d  102 (391)
T 1l0q_A           37 AVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-------SPQGVAVSPDGK-QVYVT-N-----MASSTLSVID  102 (391)
T ss_dssp             EEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSS-EEEEE-E-----TTTTEEEEEE
T ss_pred             EEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-------CccceEECCCCC-EEEEE-E-----CCCCEEEEEE
Confidence            33344553 43443 56678999999988654432221       233566666433 22222 1     1234688999


Q ss_pred             cCCCcEEecCcccCCCccccccccCCccee--eCCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCc
Q 044435          180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGG  255 (378)
Q Consensus       180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~  255 (378)
                      ..++.-...-..   ..  .     ..++.  -+|. +|..+..+      ..|..+|+.+.+.... ......      
T Consensus       103 ~~~~~~~~~~~~---~~--~-----~~~~~~s~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~~~~~~------  160 (391)
T 1l0q_A          103 TTSNTVAGTVKT---GK--S-----PLGLALSPDGKKLYVTNNGD------KTVSVINTVTKAVINTVSVGRSP------  160 (391)
T ss_dssp             TTTTEEEEEEEC---SS--S-----EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEECCSSE------
T ss_pred             CCCCeEEEEEeC---CC--C-----cceEEECCCCCEEEEEeCCC------CEEEEEECCCCcEEEEEecCCCc------
Confidence            888754322111   00  0     11222  2465 44444333      3799999988766443 322111      


Q ss_pred             ccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe---CCCeEEEEEC
Q 044435          256 ELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK---NSKDHCWYHL  330 (378)
Q Consensus       256 ~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~---~~~~~~~ydl  330 (378)
                       . .+... +| .|++....++.+.+|-+..      ......+.... ...-+++.++|+.+++..   .+..+..||+
T Consensus       161 -~-~~~~~~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~  231 (391)
T 1l0q_A          161 -K-GIAVTPDGTKVYVANFDSMSISVIDTVT------NSVIDTVKVEA-APSGIAVNPEGTKAYVTNVDKYFNTVSMIDT  231 (391)
T ss_dssp             -E-EEEECTTSSEEEEEETTTTEEEEEETTT------TEEEEEEECSS-EEEEEEECTTSSEEEEEEECSSCCEEEEEET
T ss_pred             -c-eEEECCCCCEEEEEeCCCCEEEEEECCC------CeEEEEEecCC-CccceEECCCCCEEEEEecCcCCCcEEEEEC
Confidence             1 33333 45 4555555556899997764      22333333311 244567777888777766   4567999999


Q ss_pred             CCCeEEE
Q 044435          331 DMHRVES  337 (378)
Q Consensus       331 ~~~~~~~  337 (378)
                      ++++...
T Consensus       232 ~~~~~~~  238 (391)
T 1l0q_A          232 GTNKITA  238 (391)
T ss_dssp             TTTEEEE
T ss_pred             CCCeEEE
Confidence            9886543

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=95.58  E-value=1  Score=40.77  Aligned_cols=192  Identities=6%  Similarity=-0.013  Sum_probs=101.0

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      +.+|.++.......+.+||..+++....-...      ......+.+.+... +-+++ .      ....+.+|+..++.
T Consensus       215 ~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~-~l~~~-~------~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          215 VDDDKFVIPGPKGAIFVYQITEKTPTGKLIGH------HGPISVLEFNDTNK-LLLSA-S------DDGTLRIWHGGNGN  280 (425)
T ss_dssp             EETTEEEEECGGGCEEEEETTCSSCSEEECCC------SSCEEEEEEETTTT-EEEEE-E------TTSCEEEECSSSBS
T ss_pred             cCCCEEEEEcCCCeEEEEEcCCCceeeeeccC------CCceEEEEECCCCC-EEEEE-c------CCCEEEEEECCCCc
Confidence            34566666666778899998886543221111      12234566666443 22222 2      12357788776542


Q ss_pred             EEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE
Q 044435          185 WRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       185 W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~  262 (378)
                      -.. ....   ..  ..   ..-...-+| ....+..+      ..|..||+.+.+.... .....       .+..+..
T Consensus       281 ~~~~~~~~---~~--~i---~~~~~~~~~-~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~  338 (425)
T 1r5m_A          281 SQNCFYGH---SQ--SI---VSASWVGDD-KVISCSMD------GSVRLWSLKQNTLLALSIVDGV-------PIFAGRI  338 (425)
T ss_dssp             CSEEECCC---SS--CE---EEEEEETTT-EEEEEETT------SEEEEEETTTTEEEEEEECTTC-------CEEEEEE
T ss_pred             cceEecCC---Cc--cE---EEEEECCCC-EEEEEeCC------CcEEEEECCCCcEeEecccCCc-------cEEEEEE
Confidence            111 1100   00  00   000111255 44444433      2799999987664333 22111       1102333


Q ss_pred             E-CCeEEEEEcCCCcEEEEEeccCCC-C--------c-----ceEEEEEecC-CCc-eeEEEEEEeCCCEEEEEeCCCeE
Q 044435          263 L-KGCLSLLCKYSEPWDLWVMKEYGV-K--------D-----SWSKLFTMNE-NGY-RVIPLAFSSRGDKVLFQKNSKDH  325 (378)
Q Consensus       263 ~-~G~L~~~~~~~~~l~iW~l~~~~~-~--------~-----~W~~~~~i~~-~~~-~~~~~~~~~~g~~v~~~~~~~~~  325 (378)
                      . +|.+.++...++.+.+|.+..... .        .     .+..+..+.. ... ...-+.+.++|..++....++.+
T Consensus       339 s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i  418 (425)
T 1r5m_A          339 SQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEG  418 (425)
T ss_dssp             CTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceE
Confidence            3 577777777777999999875320 0        0     1124444544 221 36667788889877778778789


Q ss_pred             EEEECCC
Q 044435          326 CWYHLDM  332 (378)
Q Consensus       326 ~~ydl~~  332 (378)
                      ..||+++
T Consensus       419 ~iw~~~g  425 (425)
T 1r5m_A          419 SVVAIPG  425 (425)
T ss_dssp             EEEECCC
T ss_pred             EEEeecC
Confidence            9999863

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=95.56  E-value=1.4  Score=40.33  Aligned_cols=195  Identities=11%  Similarity=0.047  Sum_probs=105.9

Q ss_pred             eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|.+++.. ....+.+||+.+++....-...      ......+.+++..+ +-++. ..     ....+.+|+.+++
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~l~~~-~~-----~~~~i~~~d~~~~  244 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKATVDLT------GKWSKILLYDPIRD-LVYCS-NW-----ISEDISVIDRKTK  244 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEEEEECS------SSSEEEEEEETTTT-EEEEE-ET-----TTTEEEEEETTTT
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEEEEcCC------CCCeeEEEEcCCCC-EEEEE-ec-----CCCcEEEEECCCC
Confidence            4466665554 4567899999887654321111      11234566666543 22222 11     1246888998877


Q ss_pred             cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcc--cceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEM--INDLILAFDLNIETFYSM-PMPGFGNEGGGGELS  258 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~--~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~  258 (378)
                      .....-..   ..  .     ..++.+  +|...+.+.......  ....|..||+.+++.... ..+...       . 
T Consensus       245 ~~~~~~~~---~~--~-----~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~-------~-  306 (433)
T 3bws_A          245 LEIRKTDK---IG--L-----PRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNK-------R-  306 (433)
T ss_dssp             EEEEECCC---CS--E-----EEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECE-------E-
T ss_pred             cEEEEecC---CC--C-----ceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCc-------c-
Confidence            54332111   00  0     112222  565555554321100  113789999987755433 222111       1 


Q ss_pred             eEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-------------
Q 044435          259 GVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-------------  322 (378)
Q Consensus       259 ~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-------------  322 (378)
                      .+... +| .|++....++.+.+|.++.      ......++. ..  ..-+++.++|..+++....             
T Consensus       307 ~~~~~~~g~~l~~~~~~~~~v~v~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~  378 (433)
T 3bws_A          307 HIVSGNTENKIYVSDMCCSKIEVYDLKE------KKVQKSIPVFDK--PNTIALSPDGKYLYVSCRGPNHPTEGYLKKGL  378 (433)
T ss_dssp             EEEECSSTTEEEEEETTTTEEEEEETTT------TEEEEEEECSSS--EEEEEECTTSSEEEEEECCCCCTTTCTTSCCS
T ss_pred             eEEECCCCCEEEEEecCCCEEEEEECCC------CcEEEEecCCCC--CCeEEEcCCCCEEEEEecCCCccccccccccc
Confidence            22332 45 5667666667999998874      233344444 33  4567778889877776653             


Q ss_pred             --CeEEEEECCCCeEEEE
Q 044435          323 --KDHCWYHLDMHRVESF  338 (378)
Q Consensus       323 --~~~~~ydl~~~~~~~v  338 (378)
                        +.++.||+++.+....
T Consensus       379 ~dg~v~~~d~~~~~~~~~  396 (433)
T 3bws_A          379 VLGKVYVIDTTTDTVKEF  396 (433)
T ss_dssp             SCCEEEEEETTTTEEEEE
T ss_pred             cceEEEEEECCCCcEEEE
Confidence              3799999999876554

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=95.52  E-value=0.34  Score=44.98  Aligned_cols=197  Identities=11%  Similarity=0.096  Sum_probs=102.1

Q ss_pred             cc-eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435          107 NG-LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW  185 (378)
Q Consensus       107 ~G-Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W  185 (378)
                      ++ +|.....+..+.|||..+++...+-....+    ......+.|.|..+.+-+.+ .      ....+.+++.+++.-
T Consensus       131 ~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH----~~~V~~l~f~p~~~~~l~s~-s------~D~~v~iwd~~~~~~  199 (435)
T 4e54_B          131 HPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGA----GGSITGLKFNPLNTNQFYAS-S------MEGTTRLQDFKGNIL  199 (435)
T ss_dssp             CTTCEEEEETTSCEEEECSSCCSCCEEECCCSS----SCCCCEEEECSSCTTEEEEE-C------SSSCEEEEETTSCEE
T ss_pred             CCCEEEEEeCCCEEEEEECCCCCceeEEEccCC----CCCEEEEEEeCCCCCEEEEE-e------CCCEEEEeeccCCce
Confidence            44 454555677899999988765433222111    11233566776555543322 1      123577888877655


Q ss_pred             EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-C
Q 044435          186 RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-K  264 (378)
Q Consensus       186 ~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~  264 (378)
                      +.....   ..  .......-...-+|.+...+..++      .|..+|+..+....+.  .+.     ..+..+... +
T Consensus       200 ~~~~~~---~~--~~~~~~~~~~~~~~~~l~~g~~dg------~i~~wd~~~~~~~~~~--~h~-----~~v~~v~~~p~  261 (435)
T 4e54_B          200 RVFASS---DT--INIWFCSLDVSASSRMVVTGDNVG------NVILLNMDGKELWNLR--MHK-----KKVTHVALNPC  261 (435)
T ss_dssp             EEEECC---SS--CSCCCCCEEEETTTTEEEEECSSS------BEEEEESSSCBCCCSB--CCS-----SCEEEEEECTT
T ss_pred             eEEecc---CC--CCccEEEEEECCCCCEEEEEeCCC------cEeeeccCcceeEEEe--ccc-----ceEEeeeecCC
Confidence            443221   00  000001111223566666655443      6888998765433221  111     111123332 4


Q ss_pred             C-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          265 G-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       265 G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      | .+.+....++.+.||-+..........  . .......+.-+++.++|..++....++.+..||+++...
T Consensus       262 ~~~~~~s~s~d~~v~iwd~~~~~~~~~~~--~-~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~  330 (435)
T 4e54_B          262 CDWFLATASVDQTVKIWDLRQVRGKASFL--Y-SLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDC  330 (435)
T ss_dssp             CSSEEEEEETTSBCCEEETTTCCSSSCCS--B-CCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSS
T ss_pred             CceEEEEecCcceeeEEecccccccceEE--E-eeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCcc
Confidence            4 455566666789999876532211110  0 000111244456677888777777788899999987653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.39  E-value=2.5  Score=42.30  Aligned_cols=192  Identities=9%  Similarity=-0.041  Sum_probs=103.4

Q ss_pred             eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|- |.....+..+.|||..+++....-...      ......+.+.+... + ++...      ....+.+|+..++
T Consensus        64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~------~~~v~~~~~s~~~~-~-l~~~~------~dg~i~vw~~~~~  129 (814)
T 3mkq_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTKP-Y-VLSGS------DDLTVKLWNWENN  129 (814)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSS-E-EEEEE------TTSEEEEEEGGGT
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEEEEecC------CCCEEEEEEeCCCC-E-EEEEc------CCCEEEEEECCCC
Confidence            33444 445556778999999888765332211      11233555655432 2 22222      1346788887665


Q ss_pred             -cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435          184 -LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS  258 (378)
Q Consensus       184 -~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~  258 (378)
                       .....  .   .    .....-.++.+   +|.....+..++      .|..+|+.+.+.... ..+.....     . 
T Consensus       130 ~~~~~~--~---~----~~~~~v~~~~~~p~~~~~l~~~~~dg------~v~vwd~~~~~~~~~~~~~~~~~v-----~-  188 (814)
T 3mkq_A          130 WALEQT--F---E----GHEHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTTGQERGV-----N-  188 (814)
T ss_dssp             SEEEEE--E---E----CCSSCEEEEEEETTEEEEEEEEETTS------EEEEEETTCSSCSEEEECCCTTCC-----C-
T ss_pred             ceEEEE--E---c----CCCCcEEEEEEEcCCCCEEEEEeCCC------eEEEEECCCCcceeEEecCCCCCE-----E-
Confidence             22211  1   0    00000112333   455555555443      799999876543222 22211110     0 


Q ss_pred             eEEEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          259 GVYVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       259 ~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      .+...   +|.+.++...++.+.+|.+..      ......+.........+.++++|..++....++.+..||+.+.+.
T Consensus       189 ~~~~~~~~~~~~l~~~~~dg~i~~~d~~~------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~  262 (814)
T 3mkq_A          189 YVDYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKV  262 (814)
T ss_dssp             EEEECCSTTCCEEEEECTTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCSE
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCC------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcE
Confidence            23332   677777777777999997764      223334443111255677888898777777777899999998664


Q ss_pred             EE
Q 044435          336 ES  337 (378)
Q Consensus       336 ~~  337 (378)
                      ..
T Consensus       263 ~~  264 (814)
T 3mkq_A          263 EK  264 (814)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=95.37  E-value=1.4  Score=39.47  Aligned_cols=198  Identities=9%  Similarity=-0.026  Sum_probs=101.2

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      +.++.++....+..+.|||..+++...........+  ......+.|.+.. .+-+ ...      ....+.+++..++.
T Consensus        91 s~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H--~~~V~~v~~spdg-~~l~-sgs------~d~~i~iwd~~~~~  160 (344)
T 4gqb_B           91 VGERGILVASDSGAVELWELDENETLIVSKFCKYEH--DDIVSTVSVLSSG-TQAV-SGS------KDICIKVWDLAQQV  160 (344)
T ss_dssp             ETTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECC--SSCEEEEEECTTS-SEEE-EEE------TTSCEEEEETTTTE
T ss_pred             eCCCeEEEEECCCEEEEEeccCCCceeEeeccccCC--CCCEEEEEECCCC-CEEE-EEe------CCCeEEEEECCCCc
Confidence            345666666667788999999887544332211111  1223456665543 3322 222      12457888887653


Q ss_pred             EEecCcccCCCccccccccCCccee--eCCe-EEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceE
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAF--VNGA-LHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l  260 (378)
                      =..  ..   ..  ...  .-.++.  -+|. +...+..+      ..|..+|+.+.+.. .+..+....    ... .+
T Consensus       161 ~~~--~~---~~--h~~--~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~~~----~~~-~~  220 (344)
T 4gqb_B          161 VLS--SY---RA--HAA--QVTCVAASPHKDSVFLSCSED------NRILLWDTRCPKPASQIGCSAPGY----LPT-SL  220 (344)
T ss_dssp             EEE--EE---CC--CSS--CEEEEEECSSCTTEEEEEETT------SCEEEEETTSSSCEEECC----CC----CEE-EE
T ss_pred             EEE--EE---cC--cCC--ceEEEEecCCCCCceeeeccc------cccccccccccceeeeeecceeec----cce-ee
Confidence            211  11   00  000  001122  2343 33333333      26889999876543 233222211    111 23


Q ss_pred             EEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEEE
Q 044435          261 YVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       261 ~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      ...  ++.+.+....++.+.||-+...      ..+..+........-+++.++|. +|+-...++.+.+||.++++..+
T Consensus       221 ~~~p~~~~~l~sg~~dg~v~~wd~~~~------~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~  294 (344)
T 4gqb_B          221 AWHPQQSEVFVFGDENGTVSLVDTKST------SCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR  294 (344)
T ss_dssp             EECSSCTTEEEEEETTSEEEEEESCC--------CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE
T ss_pred             eecCCCCcceEEeccCCcEEEEECCCC------cEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE
Confidence            332  4667777777779999977642      22233333111255677788875 44556667779999999998655


Q ss_pred             E
Q 044435          338 F  338 (378)
Q Consensus       338 v  338 (378)
                      +
T Consensus       295 ~  295 (344)
T 4gqb_B          295 S  295 (344)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=95.33  E-value=0.22  Score=42.92  Aligned_cols=112  Identities=11%  Similarity=0.025  Sum_probs=71.1

Q ss_pred             eeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC
Q 044435          209 FVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      +.+|.+|.-++..+.    ..|..+|+.+++- ..+++|...     +.. .++..+++|+++...+..+  |+.|-   
T Consensus        50 ~~~~~LyestG~~g~----S~v~~vD~~Tgkv~~~~~l~~~~-----Fge-Git~~g~~ly~ltw~~~~v--~v~D~---  114 (262)
T 3nol_A           50 YRNGYFYESTGLNGR----SSIRKVDIESGKTLQQIELGKRY-----FGE-GISDWKDKIVGLTWKNGLG--FVWNI---  114 (262)
T ss_dssp             EETTEEEEEEEETTE----EEEEEECTTTCCEEEEEECCTTC-----CEE-EEEEETTEEEEEESSSSEE--EEEET---
T ss_pred             EECCEEEEECCCCCC----ceEEEEECCCCcEEEEEecCCcc-----cee-EEEEeCCEEEEEEeeCCEE--EEEEC---
Confidence            347888887765432    3799999998766 445777532     222 4677789999997655544  44443   


Q ss_pred             CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe-EEEEeE
Q 044435          288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR-VESFLV  340 (378)
Q Consensus       288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~-~~~v~~  340 (378)
                       .+-.++.+|+. ..    ..++..+|+.+++..+..++..+|++|.+ .+.|..
T Consensus       115 -~t~~~~~ti~~~~e----G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V  164 (262)
T 3nol_A          115 -RNLRQVRSFNYDGE----GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITV  164 (262)
T ss_dssp             -TTCCEEEEEECSSC----CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEEC
T ss_pred             -ccCcEEEEEECCCC----ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEe
Confidence             23445666665 21    24555677766666656679999999866 444433

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=95.31  E-value=0.34  Score=43.62  Aligned_cols=189  Identities=10%  Similarity=0.010  Sum_probs=91.5

Q ss_pred             cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-EEecCcccC
Q 044435          115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-WRRIKNIKN  193 (378)
Q Consensus       115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W~~~~~~~~  193 (378)
                      .+..+.|||..++.+..+-....+    ......+.+.+.. .+-+.+ .      ....+.+|+..++. |......  
T Consensus        31 ~d~~i~iw~~~~~~~~~~~~~~~h----~~~v~~~~~s~~~-~~l~s~-s------~d~~v~vwd~~~~~~~~~~~~~--   96 (377)
T 3dwl_C           31 ATNQVELYEQDGNGWKHARTFSDH----DKIVTCVDWAPKS-NRIVTC-S------QDRNAYVYEKRPDGTWKQTLVL--   96 (377)
T ss_dssp             SSSCBCEEEEETTEEEECCCBCCC----SSCEEEEEECTTT-CCEEEE-E------TTSSEEEC------CCCCEEEC--
T ss_pred             CCCEEEEEEccCCceEEEEEEecC----CceEEEEEEeCCC-CEEEEE-e------CCCeEEEEEcCCCCceeeeeEe--
Confidence            556688899888865444433322    2234456666653 332222 2      12357788877765 4433221  


Q ss_pred             CCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce----eeeecCCCCCCCCCCcccceEEEE-CCe
Q 044435          194 FPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET----FYSMPMPGFGNEGGGGELSGVYVL-KGC  266 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~----~~~i~lP~~~~~~~~~~~~~l~~~-~G~  266 (378)
                       ..  .  ...-..+.+  +|.....+..+.      .|..+|+.+++    ...+.-|...      .+..+... +|+
T Consensus        97 -~~--~--~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~h~~------~v~~~~~~~~~~  159 (377)
T 3dwl_C           97 -LR--L--NRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKHLKRPLRS------TILSLDWHPNNV  159 (377)
T ss_dssp             -CC--C--SSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEEECSSCCS------CEEEEEECTTSS
T ss_pred             -cc--c--CCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeEeecccCC------CeEEEEEcCCCC
Confidence             00  0  000011222  455555554432      68888888765    2333322111      11133333 677


Q ss_pred             EEEEEcCCCcEEEEEeccCCC-----Ccce-------EEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          267 LSLLCKYSEPWDLWVMKEYGV-----KDSW-------SKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       267 L~~~~~~~~~l~iW~l~~~~~-----~~~W-------~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      +.+....++.+.+|.+...+.     ...|       .....+... ....-+++.++|..++....++.+..||+++++
T Consensus       160 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~  238 (377)
T 3dwl_C          160 LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSG-GWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPE  238 (377)
T ss_dssp             EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCS-SSEEEEEECTTSSCEEEEETTTEEC-CEECSTT
T ss_pred             EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCC-ceEEEEEECCCCCEEEEEeCCCcEEEEECCCCC
Confidence            777777777999999853210     1112       222222111 125567778888877777778789999988876


Q ss_pred             E
Q 044435          335 V  335 (378)
Q Consensus       335 ~  335 (378)
                      .
T Consensus       239 ~  239 (377)
T 3dwl_C          239 Q  239 (377)
T ss_dssp             S
T ss_pred             C
Confidence            4

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=95.21  E-value=1.4  Score=38.35  Aligned_cols=191  Identities=9%  Similarity=0.045  Sum_probs=104.4

Q ss_pred             eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|- ++.......+.+||..+++..........    ......+.+.+. +.+-+++ .      ....+.+|+.+++
T Consensus       106 ~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~i~~~~~~~~-~~~l~~~-~------~dg~v~~~d~~~~  173 (337)
T 1gxr_A          106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS----APACYALAISPD-SKVCFSC-C------SDGNIAVWDLHNQ  173 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS----SSCEEEEEECTT-SSEEEEE-E------TTSCEEEEETTTT
T ss_pred             cCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC----CCceEEEEECCC-CCEEEEE-e------CCCcEEEEeCCCC
Confidence            33554 44445667789999988764332222211    112345666553 2332222 1      1235888888776


Q ss_pred             cEEec-CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435          184 LWRRI-KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG  259 (378)
Q Consensus       184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~  259 (378)
                      ..... ...   ..  .     -..+.+  +|.....+..++      .|..||+.+.+-... ..+...       . .
T Consensus       174 ~~~~~~~~~---~~--~-----i~~~~~~~~~~~l~~~~~dg------~i~~~d~~~~~~~~~~~~~~~v-------~-~  229 (337)
T 1gxr_A          174 TLVRQFQGH---TD--G-----ASCIDISNDGTKLWTGGLDN------TVRSWDLREGRQLQQHDFTSQI-------F-S  229 (337)
T ss_dssp             EEEEEECCC---SS--C-----EEEEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEECSSCE-------E-E
T ss_pred             ceeeeeecc---cC--c-----eEEEEECCCCCEEEEEecCC------cEEEEECCCCceEeeecCCCce-------E-E
Confidence            43221 111   00  0     112222  566666655442      799999987654332 332211       1 3


Q ss_pred             EEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          260 VYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       260 l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      +... +|.+.++...++.+.+|.+....       ...+........-+.+.++|..++....++.+..||+++++....
T Consensus       230 ~~~s~~~~~l~~~~~~~~i~~~~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~  302 (337)
T 1gxr_A          230 LGYCPTGEWLAVGMESSNVEVLHVNKPD-------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQ  302 (337)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTSSC-------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECCCCC-------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEE
Confidence            3332 67777777667799999887521       112222111255677788899777777788899999999876643

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=95.07  E-value=1.6  Score=38.02  Aligned_cols=186  Identities=12%  Similarity=0.079  Sum_probs=99.6

Q ss_pred             eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcc
Q 044435          113 KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNI  191 (378)
Q Consensus       113 ~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~  191 (378)
                      ...+..+.|||..+++....-...      ......+.+.+.. .+-+.+ .      ....+.+|+..++.-.. +...
T Consensus        41 ~~~dg~i~iw~~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~s~-~------~d~~i~vwd~~~~~~~~~~~~~  106 (312)
T 4ery_A           41 SSADKLIKIWGAYDGKFEKTISGH------KLGISDVAWSSDS-NLLVSA-S------DDKTLKIWDVSSGKCLKTLKGH  106 (312)
T ss_dssp             EETTSCEEEEETTTCCEEEEECCC------SSCEEEEEECTTS-SEEEEE-E------TTSEEEEEETTTCCEEEEEECC
T ss_pred             eeCCCeEEEEeCCCcccchhhccC------CCceEEEEEcCCC-CEEEEE-C------CCCEEEEEECCCCcEEEEEcCC
Confidence            345566788888887765432211      2224456666543 332222 2      13468888887653211 1100


Q ss_pred             cCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEE
Q 044435          192 KNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLL  270 (378)
Q Consensus       192 ~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~  270 (378)
                         ..  ..   ..-...-+|.+...+..+.      .|..+|+.+.+.... ++.+..     .+..+... +|.+.+.
T Consensus       107 ---~~--~v---~~~~~~~~~~~l~s~~~d~------~i~iwd~~~~~~~~~-~~~~~~-----~v~~~~~~~~~~~l~~  166 (312)
T 4ery_A          107 ---SN--YV---FCCNFNPQSNLIVSGSFDE------SVRIWDVKTGKCLKT-LPAHSD-----PVSAVHFNRDGSLIVS  166 (312)
T ss_dssp             ---SS--CE---EEEEECSSSSEEEEEETTS------CEEEEETTTCCEEEE-ECCCSS-----CEEEEEECTTSSEEEE
T ss_pred             ---CC--CE---EEEEEcCCCCEEEEEeCCC------cEEEEECCCCEEEEE-ecCCCC-----cEEEEEEcCCCCEEEE
Confidence               00  00   0001111444444444432      689999987654322 222111     11023332 6777777


Q ss_pred             EcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          271 CKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       271 ~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      ...++.+.+|.+...      .....+.. .......+.+.++|..++....++.+..||+++.+....
T Consensus       167 ~~~d~~i~~wd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~  229 (312)
T 4ery_A          167 SSYDGLCRIWDTASG------QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT  229 (312)
T ss_dssp             EETTSCEEEEETTTC------CEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             EeCCCcEEEEECCCC------ceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            777779999987652      12233322 222355677888999888888788899999998875443

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=95.06  E-value=1.7  Score=38.37  Aligned_cols=192  Identities=9%  Similarity=0.025  Sum_probs=101.5

Q ss_pred             cceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435          107 NGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW  185 (378)
Q Consensus       107 ~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W  185 (378)
                      +|.+++. ..+..+.+||..+++....-...      ......+.+.|.. .+-+.+ .      ....+.+|+.+++.-
T Consensus        91 ~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~------~~~~~~~~~spdg-~~l~~g-~------~dg~v~i~~~~~~~~  156 (321)
T 3ow8_A           91 TLPIAASSSLDAHIRLWDLENGKQIKSIDAG------PVDAWTLAFSPDS-QYLATG-T------HVGKVNIFGVESGKK  156 (321)
T ss_dssp             SSSEEEEEETTSEEEEEETTTTEEEEEEECC------TTCCCCEEECTTS-SEEEEE-C------TTSEEEEEETTTCSE
T ss_pred             CCCEEEEEeCCCcEEEEECCCCCEEEEEeCC------CccEEEEEECCCC-CEEEEE-c------CCCcEEEEEcCCCce
Confidence            4443333 45677889999887754321111      1112234555543 222221 1      234677888776532


Q ss_pred             EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-C
Q 044435          186 RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-K  264 (378)
Q Consensus       186 ~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~  264 (378)
                      ...-..   ..  .  ....-...-+|.....+..+.      .|..+|+.+.+.... +..+..     .+..+... +
T Consensus       157 ~~~~~~---~~--~--~v~~~~~spdg~~lasg~~dg------~i~iwd~~~~~~~~~-~~~h~~-----~v~~l~~spd  217 (321)
T 3ow8_A          157 EYSLDT---RG--K--FILSIAYSPDGKYLASGAIDG------IINIFDIATGKLLHT-LEGHAM-----PIRSLTFSPD  217 (321)
T ss_dssp             EEEEEC---SS--S--CEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEE-ECCCSS-----CCCEEEECTT
T ss_pred             eEEecC---CC--c--eEEEEEECCCCCEEEEEcCCC------eEEEEECCCCcEEEE-EcccCC-----ceeEEEEcCC
Confidence            211000   00  0  000001112566555555442      688999987754322 111111     11033443 6


Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      |.+.+....++.+.||.+...      .....+........-+++.++|..++....++.+..||+++++...
T Consensus       218 ~~~l~s~s~dg~i~iwd~~~~------~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~  284 (321)
T 3ow8_A          218 SQLLVTASDDGYIKIYDVQHA------NLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVH  284 (321)
T ss_dssp             SCEEEEECTTSCEEEEETTTC------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCc------ceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEE
Confidence            777777777779999988752      2233444311125567788889877777778889999999887543

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=95.05  E-value=1.6  Score=38.13  Aligned_cols=108  Identities=10%  Similarity=0.049  Sum_probs=57.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.+...+..+.      .|..+|+.+.+.... .....       .. .+....+...++...++.+.||.++...  .
T Consensus       226 ~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~~~~~-------v~-~~~~~~~~~~~~~~~d~~i~iwd~~~~~--~  289 (340)
T 4aow_A          226 DGSLCASGGKDG------QAMLWDLNEGKHLYTLDGGDI-------IN-ALCFSPNRYWLCAATGPSIKIWDLEGKI--I  289 (340)
T ss_dssp             TSSEEEEEETTC------EEEEEETTTTEEEEEEECSSC-------EE-EEEECSSSSEEEEEETTEEEEEETTTTE--E
T ss_pred             CCCEEEEEeCCC------eEEEEEeccCceeeeecCCce-------EE-eeecCCCCceeeccCCCEEEEEECCCCe--E
Confidence            566655555543      788899887654322 22211       11 2333333333444445688888776421  1


Q ss_pred             ceEEEEEe-----cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          290 SWSKLFTM-----NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       290 ~W~~~~~i-----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      .+......     ........-+++.++|..++-...++.+..||++|++
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          290 VDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             EEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            11111000     0011224557778899977777778889999998864

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=95.04  E-value=1.6  Score=38.11  Aligned_cols=192  Identities=9%  Similarity=0.032  Sum_probs=102.0

Q ss_pred             cceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435          107 NGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW  185 (378)
Q Consensus       107 ~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W  185 (378)
                      .+.+.+.. ....+.++|+.|++....-..+.     . .. .+.+++..+ +-++. ..     ....+.+++..++.-
T Consensus         9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~-----~-~~-~~~~s~dg~-~l~~~-~~-----~~~~i~~~d~~~~~~   74 (331)
T 3u4y_A            9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGY-----D-FV-DTAITSDCS-NVVVT-SD-----FCQTLVQIETQLEPP   74 (331)
T ss_dssp             CCEEEEEEGGGTEEEEEETTTCCEEEEEECCC-----C-EE-EEEECSSSC-EEEEE-ES-----TTCEEEEEECSSSSC
T ss_pred             CCEEEEEecCCCeEEEEeCcccceeeeEEccC-----C-cc-eEEEcCCCC-EEEEE-eC-----CCCeEEEEECCCCce
Confidence            34444443 45678899999988755433221     1 12 566666544 22222 11     123788888887653


Q ss_pred             --EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEE
Q 044435          186 --RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       186 --~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~  262 (378)
                        +..... .-|.  .     .-.+.-+|...+.......   ...|..+|+.+.+... ++.....       . .++.
T Consensus        75 ~~~~~~~~-~~~~--~-----~~~~s~dg~~l~~~~~~~~---~~~i~v~d~~~~~~~~~~~~~~~~-------~-~~~~  135 (331)
T 3u4y_A           75 KVVAIQEG-QSSM--A-----DVDITPDDQFAVTVTGLNH---PFNMQSYSFLKNKFISTIPIPYDA-------V-GIAI  135 (331)
T ss_dssp             EEEEEEEC-SSCC--C-----CEEECTTSSEEEECCCSSS---SCEEEEEETTTTEEEEEEECCTTE-------E-EEEE
T ss_pred             eEEecccC-CCCc--c-----ceEECCCCCEEEEecCCCC---cccEEEEECCCCCeEEEEECCCCc-------c-ceEE
Confidence              222111 0011  0     0122234553334333211   1269999998776543 3332211       1 3344


Q ss_pred             E-CCe-EEEEEcCCCc-EEEEEeccCCCCcceEE-EEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeE
Q 044435          263 L-KGC-LSLLCKYSEP-WDLWVMKEYGVKDSWSK-LFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRV  335 (378)
Q Consensus       263 ~-~G~-L~~~~~~~~~-l~iW~l~~~~~~~~W~~-~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~  335 (378)
                      . +|+ |++....... +.+|.++..+.  .... ...+.. ..  ..-+.+.++|+.+++... +..+..||+++++.
T Consensus       136 spdg~~l~~~~~~~~~~i~~~~~~~~g~--~~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          136 SPNGNGLILIDRSSANTVRRFKIDADGV--LFDTGQEFISGGTR--PFNITFTPDGNFAFVANLIGNSIGILETQNPEN  210 (331)
T ss_dssp             CTTSSCEEEEEETTTTEEEEEEECTTCC--EEEEEEEEECSSSS--EEEEEECTTSSEEEEEETTTTEEEEEECSSTTS
T ss_pred             CCCCCEEEEEecCCCceEEEEEECCCCc--EeecCCccccCCCC--ccceEECCCCCEEEEEeCCCCeEEEEECCCCcc
Confidence            3 564 7777666566 99999986431  1111 222332 22  556778889986666653 55799999998874

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=94.81  E-value=1.6  Score=36.89  Aligned_cols=187  Identities=11%  Similarity=0.039  Sum_probs=97.3

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      ..+|.+.+.+....++++|+.++....++...      .....++.+|+.. ...|   ..    .....+.+|+.++..
T Consensus        75 ~~~g~l~v~~~~~~i~~~d~~~~~~~~~~~~~------~~~p~~i~~~~~g-~l~v---~~----~~~~~i~~~~~~~~~  140 (270)
T 1rwi_B           75 DGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG------LNYPEGLAVDTQG-AVYV---AD----RGNNRVVKLAAGSKT  140 (270)
T ss_dssp             CTTCCEEEEETTTEEEEECTTCSCCEECCCCS------CSSEEEEEECTTC-CEEE---EE----GGGTEEEEECTTCCS
T ss_pred             CCCCCEEEEcCCCEEEEEeCCCceEeeeecCC------cCCCcceEECCCC-CEEE---EE----CCCCEEEEEECCCce
Confidence            34666655555667899999887766554322      1123467777643 2222   11    112356667655544


Q ss_pred             EEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~  262 (378)
                      .......       ..  ....++.+  +|.+|+.....      ..|..||..+.......... ..     .+..++.
T Consensus       141 ~~~~~~~-------~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~~-~~-----~p~~i~~  199 (270)
T 1rwi_B          141 QTVLPFT-------GL--NDPDGVAVDNSGNVYVTDTDN------NRVVKLEAESNNQVVLPFTD-IT-----APWGIAV  199 (270)
T ss_dssp             CEECCCC-------SC--CSCCCEEECTTCCEEEEEGGG------TEEEEECTTTCCEEECCCSS-CC-----SEEEEEE
T ss_pred             eEeeccc-------cC--CCceeEEEeCCCCEEEEECCC------CEEEEEecCCCceEeecccC-CC-----CceEEEE
Confidence            3322111       10  11223443  58877765543      27999999876654432211 11     1113444


Q ss_pred             E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe
Q 044435          263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR  334 (378)
Q Consensus       263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~  334 (378)
                      . +|.|++.......+.+|..+.  . ....    +.. ......-+++.++|. +++.. .+..+..|++...+
T Consensus       200 d~~g~l~v~~~~~~~v~~~~~~~--~-~~~~----~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          200 DEAGTVYVTEHNTNQVVKLLAGS--T-TSTV----LPFTGLNTPLAVAVDSDRT-VYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             CTTCCEEEEETTTSCEEEECTTC--S-CCEE----CCCCSCSCEEEEEECTTCC-EEEEEGGGTEEEEECCCGGG
T ss_pred             CCCCCEEEEECCCCcEEEEcCCC--C-ccee----eccCCCCCceeEEECCCCC-EEEEECCCCEEEEEcCCCcc
Confidence            3 578888887666766665432  1 1111    222 222244566666787 55543 45568888876554

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=94.65  E-value=2.1  Score=37.60  Aligned_cols=204  Identities=10%  Similarity=-0.028  Sum_probs=104.6

Q ss_pred             eeeccceEEEee-cCCcEEEEcCcccceee-cCCCCCC--CCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEE
Q 044435          103 IGSCNGLLALKN-YPKGIILLNPLTKKHRV-LPKFYRD--LHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVY  178 (378)
Q Consensus       103 ~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~-LP~~~~~--~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vy  178 (378)
                      ++..+..+.+.. ....+.++|+.+++... ++.....  .........++.+++..+...+ .-.     .....+.++
T Consensus        96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~-~~~-----~~~~~i~~~  169 (353)
T 3vgz_A           96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYI-SGI-----GKESVIWVV  169 (353)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEE-EEE-----SSSCEEEEE
T ss_pred             ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEE-Eec-----CCCceEEEE
Confidence            333344455544 45689999999987643 3321111  0000112345777776543222 211     113468888


Q ss_pred             EcCCCcEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcc
Q 044435          179 GLKVNLWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGE  256 (378)
Q Consensus       179 ss~~~~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~  256 (378)
                      +..++.=.. ++..       .. ....-.+.-+|...+++..+      ..|..+|+.+.+... +..+......  ..
T Consensus       170 d~~~~~~~~~~~~~-------~~-~~~~~~~s~dg~~l~~~~~~------~~i~~~d~~~~~~~~~~~~~~~~~~~--~~  233 (353)
T 3vgz_A          170 DGGNIKLKTAIQNT-------GK-MSTGLALDSEGKRLYTTNAD------GELITIDTADNKILSRKKLLDDGKEH--FF  233 (353)
T ss_dssp             ETTTTEEEEEECCC-------CT-TCCCCEEETTTTEEEEECTT------SEEEEEETTTTEEEEEEECCCSSSCC--CE
T ss_pred             cCCCCceEEEecCC-------CC-ccceEEECCCCCEEEEEcCC------CeEEEEECCCCeEEEEEEcCCCCCCc--cc
Confidence            887753221 1101       10 00111222356644444433      278899998876643 3553221111  11


Q ss_pred             cceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCC
Q 044435          257 LSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDM  332 (378)
Q Consensus       257 ~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~  332 (378)
                      . .+... +| .|++.......+.+|-++.      ......++. ..   .-+.+.++|+.+++.. .++.+..||+++
T Consensus       234 ~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  303 (353)
T 3vgz_A          234 I-NISLDTARQRAFITDSKAAEVLVVDTRN------GNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKS  303 (353)
T ss_dssp             E-EEEEETTTTEEEEEESSSSEEEEEETTT------CCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             c-eEEECCCCCEEEEEeCCCCEEEEEECCC------CcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCC
Confidence            1 23444 45 5666655445777776653      223334444 21   2367778898777766 356799999998


Q ss_pred             CeEEEE
Q 044435          333 HRVESF  338 (378)
Q Consensus       333 ~~~~~v  338 (378)
                      ++....
T Consensus       304 ~~~~~~  309 (353)
T 3vgz_A          304 YKVVKT  309 (353)
T ss_dssp             TEEEEE
T ss_pred             CeEEEE
Confidence            886544

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=94.56  E-value=2.6  Score=38.20  Aligned_cols=194  Identities=9%  Similarity=0.018  Sum_probs=105.1

Q ss_pred             ccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|- |+.......+.|||..+++....-...      ......+.+.+.. .+-+ ...      ....+.+|+..++.
T Consensus       107 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~l~-s~s------~d~~i~iwd~~~~~  172 (420)
T 3vl1_A          107 LQMRRFILGTTEGDIKVLDSNFNLQREIDQAH------VSEITKLKFFPSG-EALI-SSS------QDMQLKIWSVKDGS  172 (420)
T ss_dssp             SSSCEEEEEETTSCEEEECTTSCEEEEETTSS------SSCEEEEEECTTS-SEEE-EEE------TTSEEEEEETTTCC
T ss_pred             cCCCEEEEEECCCCEEEEeCCCcceeeecccc------cCccEEEEECCCC-CEEE-EEe------CCCeEEEEeCCCCc
Confidence            3444 444456678999999988876553222      1234466676643 3222 222      13468888887642


Q ss_pred             E-EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceE
Q 044435          185 W-RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       185 W-~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l  260 (378)
                      = +.+...   ..  .     -.++.+  +|.....+..+.      .|..+|+.+.+... +..+.....   ... .+
T Consensus       173 ~~~~~~~h---~~--~-----v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~~~---~v~-~~  232 (420)
T 3vl1_A          173 NPRTLIGH---RA--T-----VTDIAIIDRGRNVLSASLDG------TIRLWECGTGTTIHTFNRKENPHD---GVN-SI  232 (420)
T ss_dssp             CCEEEECC---SS--C-----EEEEEEETTTTEEEEEETTS------CEEEEETTTTEEEEEECBTTBTTC---CEE-EE
T ss_pred             CceEEcCC---CC--c-----EEEEEEcCCCCEEEEEcCCC------cEEEeECCCCceeEEeecCCCCCC---Ccc-EE
Confidence            1 111100   00  0     011222  455555554442      68889988765433 232211100   000 11


Q ss_pred             E----------------------EECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EE
Q 044435          261 Y----------------------VLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KV  316 (378)
Q Consensus       261 ~----------------------~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v  316 (378)
                      .                      ..+|++.++...++.+.+|.+...      .....+.. ......-+.+.++|. .+
T Consensus       233 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~~~v~~~~~~~~~~~~l  306 (420)
T 3vl1_A          233 ALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK------EQTIQLPSKFTCSCNSLTVDGNNANYI  306 (420)
T ss_dssp             EEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC------CEEEEECCTTSSCEEEEEECSSCTTEE
T ss_pred             EEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC------ceeEEcccccCCCceeEEEeCCCCCEE
Confidence            1                      126777777777779999988652      12333333 222356677788887 78


Q ss_pred             EEEeCCCeEEEEECCCCe--EEEEe
Q 044435          317 LFQKNSKDHCWYHLDMHR--VESFL  339 (378)
Q Consensus       317 ~~~~~~~~~~~ydl~~~~--~~~v~  339 (378)
                      +....++.+..||+++.+  +..+.
T Consensus       307 ~~g~~dg~i~vwd~~~~~~~~~~~~  331 (420)
T 3vl1_A          307 YAGYENGMLAQWDLRSPECPVGEFL  331 (420)
T ss_dssp             EEEETTSEEEEEETTCTTSCSEEEE
T ss_pred             EEEeCCCeEEEEEcCCCcCchhhhh
Confidence            888888889999998864  44443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=94.46  E-value=2.6  Score=37.80  Aligned_cols=189  Identities=12%  Similarity=0.044  Sum_probs=102.5

Q ss_pred             eccce-EEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          105 SCNGL-LALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       105 s~~GL-l~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      +.+|- |.+.. ....+.++|+.+++....-....       ....+.+++... +-++..      .....+.+++..+
T Consensus        82 spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~-------~~~~~~~s~dg~-~l~~~~------~~~~~v~~~d~~~  147 (391)
T 1l0q_A           82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK-------SPLGLALSPDGK-KLYVTN------NGDKTVSVINTVT  147 (391)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS-------SEEEEEECTTSS-EEEEEE------TTTTEEEEEETTT
T ss_pred             CCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC-------CcceEEECCCCC-EEEEEe------CCCCEEEEEECCC
Confidence            33443 44444 45779999999988655432221       234566665433 222221      1234788899887


Q ss_pred             CcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG  259 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~  259 (378)
                      +.....-..       ..   ....+.  -+|...++.....     ..|..+|+.+.+.... .....       .. .
T Consensus       148 ~~~~~~~~~-------~~---~~~~~~~~~dg~~l~~~~~~~-----~~v~~~d~~~~~~~~~~~~~~~-------~~-~  204 (391)
T 1l0q_A          148 KAVINTVSV-------GR---SPKGIAVTPDGTKVYVANFDS-----MSISVIDTVTNSVIDTVKVEAA-------PS-G  204 (391)
T ss_dssp             TEEEEEEEC-------CS---SEEEEEECTTSSEEEEEETTT-----TEEEEEETTTTEEEEEEECSSE-------EE-E
T ss_pred             CcEEEEEec-------CC---CcceEEECCCCCEEEEEeCCC-----CEEEEEECCCCeEEEEEecCCC-------cc-c
Confidence            755432111       00   001222  2465444443322     2799999988765433 32211       11 2


Q ss_pred             EEEE-CCe-EEEEEc--CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCC
Q 044435          260 VYVL-KGC-LSLLCK--YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMH  333 (378)
Q Consensus       260 l~~~-~G~-L~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~  333 (378)
                      +... +|+ |++...  .+..+.+|-+..      ...+..+.. ..  ..-+.+.++|+.+++.. .++.+..||++++
T Consensus       205 ~~~~~~g~~l~~~~~~~~~~~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~  276 (391)
T 1l0q_A          205 IAVNPEGTKAYVTNVDKYFNTVSMIDTGT------NKITARIPVGPD--PAGIAVTPDGKKVYVALSFXNTVSVIDTATN  276 (391)
T ss_dssp             EEECTTSSEEEEEEECSSCCEEEEEETTT------TEEEEEEECCSS--EEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             eEECCCCCEEEEEecCcCCCcEEEEECCC------CeEEEEEecCCC--ccEEEEccCCCEEEEEcCCCCEEEEEECCCC
Confidence            3333 454 444443  345888887764      233444544 32  44567778898776664 4667999999998


Q ss_pred             eEEEE
Q 044435          334 RVESF  338 (378)
Q Consensus       334 ~~~~v  338 (378)
                      +....
T Consensus       277 ~~~~~  281 (391)
T 1l0q_A          277 TITAT  281 (391)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            86654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=94.41  E-value=2.4  Score=37.10  Aligned_cols=195  Identities=12%  Similarity=-0.027  Sum_probs=103.8

Q ss_pred             eEEEeecCCcEEEEcC-cccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC---c
Q 044435          109 LLALKNYPKGIILLNP-LTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN---L  184 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP-~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~---~  184 (378)
                      +++.......+.+||. .+++...+.....     ......+.+.+  +.+-+.+ .      ....+.+|+.++.   .
T Consensus        71 ~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~-----~~~v~~l~~~~--~~~l~s~-~------~d~~i~iwd~~~~~~~~  136 (342)
T 1yfq_A           71 QIYVGTVQGEILKVDLIGSPSFQALTNNEA-----NLGICRICKYG--DDKLIAA-S------WDGLIEVIDPRNYGDGV  136 (342)
T ss_dssp             EEEEEETTSCEEEECSSSSSSEEECBSCCC-----CSCEEEEEEET--TTEEEEE-E------TTSEEEEECHHHHTTBC
T ss_pred             EEEEEcCCCeEEEEEeccCCceEeccccCC-----CCceEEEEeCC--CCEEEEE-c------CCCeEEEEccccccccc
Confidence            3555556778999999 8888766654211     12344666766  4443332 2      1245677766430   0


Q ss_pred             ----EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCC-ce--eeeecCCCCCCCCCCccc
Q 044435          185 ----WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNI-ET--FYSMPMPGFGNEGGGGEL  257 (378)
Q Consensus       185 ----W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~-~~--~~~i~lP~~~~~~~~~~~  257 (378)
                          .+.+...   ..     ...-.++.+++.....+..+      ..|..||+.+ ..  ......+....     ..
T Consensus       137 ~~~~~~~~~~~---~~-----~~~v~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~~~~~~~~-----i~  197 (342)
T 1yfq_A          137 IAVKNLNSNNT---KV-----KNKIFTMDTNSSRLIVGMNN------SQVQWFRLPLCEDDNGTIEESGLKYQ-----IR  197 (342)
T ss_dssp             EEEEESCSSSS---SS-----CCCEEEEEECSSEEEEEEST------TEEEEEESSCCTTCCCEEEECSCSSC-----EE
T ss_pred             ccccCCeeeEE---ee-----CCceEEEEecCCcEEEEeCC------CeEEEEECCccccccceeeecCCCCc-----ee
Confidence                1111111   10     00111333333333333333      2799999887 32  33333322211     11


Q ss_pred             ceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C--------CceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435          258 SGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N--------GYRVIPLAFSSRGDKVLFQKNSKDHC  326 (378)
Q Consensus       258 ~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~--------~~~~~~~~~~~~g~~v~~~~~~~~~~  326 (378)
                       .+...  +|.+.++...++.+.||.++..+..........+.. .        ......+++.++|..++....++.+.
T Consensus       198 -~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~  276 (342)
T 1yfq_A          198 -DVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIIS  276 (342)
T ss_dssp             -EEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEE
T ss_pred             -EEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEE
Confidence             34444  577777777777999999986411111112222222 1        11355677788888777777787899


Q ss_pred             EEECCCCeEEE
Q 044435          327 WYHLDMHRVES  337 (378)
Q Consensus       327 ~ydl~~~~~~~  337 (378)
                      .||+++++...
T Consensus       277 vwd~~~~~~~~  287 (342)
T 1yfq_A          277 CWNLQTRKKIK  287 (342)
T ss_dssp             EEETTTTEEEE
T ss_pred             EEcCccHhHhh
Confidence            99999887543

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=94.36  E-value=2.6  Score=37.25  Aligned_cols=148  Identities=9%  Similarity=-0.012  Sum_probs=81.6

Q ss_pred             ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435          172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN  250 (378)
Q Consensus       172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~  250 (378)
                      ...+..++..++.++.+...   ..  . .....-.+.-+|.+|.....+..    ..|..||+.+++.+.+ .++....
T Consensus        17 ~i~v~~~d~~tg~~~~~~~~---~~--~-~~p~~~a~spdg~l~~~~~~~~~----~~v~~~~~~~g~~~~~~~~~~~~~   86 (347)
T 3hfq_A           17 GIYQGTLDTTAKTLTNDGLL---AA--T-QNPTYLALSAKDCLYSVDKEDDE----GGIAAWQIDGQTAHKLNTVVAPGT   86 (347)
T ss_dssp             EEEEEEEETTTTEEEEEEEE---EE--C-SCCCCEEECTTCEEEEEEEETTE----EEEEEEEEETTEEEEEEEEEEESC
T ss_pred             CEEEEEEcCCCCeEEEeeee---ec--c-CCcceEEEccCCeEEEEEecCCC----ceEEEEEecCCcEEEeeeeecCCC
Confidence            34455556667777664332   11  0 00011112237888887764211    3799999987777665 2222211


Q ss_pred             CCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CC-------ceeEEEEEEeCCCEEEEE
Q 044435          251 EGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NG-------YRVIPLAFSSRGDKVLFQ  319 (378)
Q Consensus       251 ~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~-------~~~~~~~~~~~g~~v~~~  319 (378)
                      ..    . .++.. +|+ |++....++.+.+|.++..+   ....+..+..  ..       ....-+++.++|+ +++.
T Consensus        87 ~p----~-~~a~spdg~~l~~~~~~~~~v~v~~~~~~g---~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~  157 (347)
T 3hfq_A           87 PP----A-YVAVDEARQLVYSANYHKGTAEVMKIAADG---ALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVI  157 (347)
T ss_dssp             CC----S-EEEEETTTTEEEEEETTTTEEEEEEECTTS---CEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEE
T ss_pred             CC----E-EEEECCCCCEEEEEeCCCCEEEEEEeCCCC---CeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEE
Confidence            11    1 44554 565 55555455689999997532   2344444432  11       1244577788999 6555


Q ss_pred             eC-CCeEEEEECC-CCeEEEE
Q 044435          320 KN-SKDHCWYHLD-MHRVESF  338 (378)
Q Consensus       320 ~~-~~~~~~ydl~-~~~~~~v  338 (378)
                      .. +..+..||++ ++++..+
T Consensus       158 ~~~~~~v~~~~~~~~g~~~~~  178 (347)
T 3hfq_A          158 DLGSDKVYVYNVSDAGQLSEQ  178 (347)
T ss_dssp             ETTTTEEEEEEECTTSCEEEE
T ss_pred             eCCCCEEEEEEECCCCcEEEe
Confidence            44 5569999998 6666654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=94.29  E-value=0.79  Score=39.64  Aligned_cols=110  Identities=7%  Similarity=-0.035  Sum_probs=69.0

Q ss_pred             CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcc
Q 044435          212 GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDS  290 (378)
Q Consensus       212 G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~  290 (378)
                      |.+|...+....    ..|..+|+.+++- ..+++|....     .. .++..+++|+++...+..+  ++.+-    .+
T Consensus        32 g~Lyvstg~~~~----s~v~~iD~~tg~v~~~i~l~~~~f-----ge-Gi~~~g~~lyv~t~~~~~v--~viD~----~t   95 (266)
T 2iwa_A           32 DTLFESTGLYGR----SSVRQVALQTGKVENIHKMDDSYF-----GE-GLTLLNEKLYQVVWLKNIG--FIYDR----RT   95 (266)
T ss_dssp             TEEEEEECSTTT----CEEEEEETTTCCEEEEEECCTTCC-----EE-EEEEETTEEEEEETTCSEE--EEEET----TT
T ss_pred             CeEEEECCCCCC----CEEEEEECCCCCEEEEEecCCCcc-----eE-EEEEeCCEEEEEEecCCEE--EEEEC----CC
Confidence            678887653221    3899999998765 4457765322     12 4566688999998655554  44443    13


Q ss_pred             eEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe-EEEEe
Q 044435          291 WSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR-VESFL  339 (378)
Q Consensus       291 W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~-~~~v~  339 (378)
                      -..+.+|+...  ....++..+|+.+++...+.++..+|+++.+ .+.|.
T Consensus        96 ~~v~~~i~~g~--~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~  143 (266)
T 2iwa_A           96 LSNIKNFTHQM--KDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHN  143 (266)
T ss_dssp             TEEEEEEECCS--SSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEE
T ss_pred             CcEEEEEECCC--CCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence            45556665420  1235566677767777666679999999977 44444

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=94.23  E-value=2.7  Score=37.13  Aligned_cols=192  Identities=10%  Similarity=-0.013  Sum_probs=100.7

Q ss_pred             ccceEEEee-cCCcEEEEcCcccce-eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          106 CNGLLALKN-YPKGIILLNPLTKKH-RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      .++.+.+.. ....+.|+|+.|++. ..++...        ...++.+++..   ++.....     ....+.+++..++
T Consensus        52 ~~~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~--------~p~~i~~~~~g---~lyv~~~-----~~~~v~~iD~~t~  115 (328)
T 3dsm_A           52 RDGIGWIVVNNSHVIFAIDINTFKEVGRITGFT--------SPRYIHFLSDE---KAYVTQI-----WDYRIFIINPKTY  115 (328)
T ss_dssp             ETTEEEEEEGGGTEEEEEETTTCCEEEEEECCS--------SEEEEEEEETT---EEEEEEB-----SCSEEEEEETTTT
T ss_pred             ECCEEEEEEcCCCEEEEEECcccEEEEEcCCCC--------CCcEEEEeCCC---eEEEEEC-----CCCeEEEEECCCC
Confidence            345554443 456789999999887 4454222        12245554442   3322211     1356888998887


Q ss_pred             cEEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEE
Q 044435          184 LWRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       184 ~W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~  261 (378)
                      +-.. ++..   .. .........-+.-+|.+|.......     ..|.++|+.+.+.. .++......        .+.
T Consensus       116 ~~~~~i~~g---~~-~~~~~~p~~i~~~~~~lyv~~~~~~-----~~v~viD~~t~~~~~~i~~g~~p~--------~i~  178 (328)
T 3dsm_A          116 EITGYIECP---DM-DMESGSTEQMVQYGKYVYVNCWSYQ-----NRILKIDTETDKVVDELTIGIQPT--------SLV  178 (328)
T ss_dssp             EEEEEEECT---TC-CTTTCBCCCEEEETTEEEEEECTTC-----CEEEEEETTTTEEEEEEECSSCBC--------CCE
T ss_pred             eEEEEEEcC---Cc-cccCCCcceEEEECCEEEEEcCCCC-----CEEEEEECCCCeEEEEEEcCCCcc--------ceE
Confidence            5332 2111   00 0000011112235677777653211     37999999987654 344432211        223


Q ss_pred             E-ECCeEEEEEcCCC--------cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435          262 V-LKGCLSLLCKYSE--------PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD  331 (378)
Q Consensus       262 ~-~~G~L~~~~~~~~--------~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~  331 (378)
                      . -+|+++++.....        .-.|++++...  .+  ....+.. ......-+++.++|+.+++...  .++.+|++
T Consensus       179 ~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t--~~--v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~  252 (328)
T 3dsm_A          179 MDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAET--FT--VEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVE  252 (328)
T ss_dssp             ECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTT--TE--EEEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETT
T ss_pred             EcCCCCEEEEECCCccCCccccCCceEEEEECCC--Ce--EEEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECC
Confidence            3 3689888776431        13455555321  12  2233333 1112556777777886766644  69999999


Q ss_pred             CCeEE
Q 044435          332 MHRVE  336 (378)
Q Consensus       332 ~~~~~  336 (378)
                      ++++.
T Consensus       253 t~~~~  257 (328)
T 3dsm_A          253 ADRVP  257 (328)
T ss_dssp             CSSCC
T ss_pred             CCcee
Confidence            88863

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=94.11  E-value=3.1  Score=37.26  Aligned_cols=112  Identities=7%  Similarity=-0.020  Sum_probs=59.5

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCC-CCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGF-GNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~-~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.....+..++      .|..+|+.+.+-........ ......... ......+...++...++.+.+|.+..     
T Consensus       256 ~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~v~d~~~-----  323 (408)
T 4a11_B          256 DGLHLLTVGTDN------RMRLWNSSNGENTLVNYGKVCNNSKKGLKF-TVSCGCSSEFVFVPYGSTIAVYTVYS-----  323 (408)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTCCBCCCCCCCCCCCCSSCCCC-EECCSSSSCEEEEEETTEEEEEETTT-----
T ss_pred             CCCEEEEecCCC------eEEEEECCCCccceecccccccccccccee-EEecCCCceEEEEecCCEEEEEECcC-----
Confidence            565555554442      69999998765433211111 000001111 11112233333334445888888764     


Q ss_pred             ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                       ...+..+........-+++.++|..++....++.+..||+++.+.
T Consensus       324 -~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~  368 (408)
T 4a11_B          324 -GEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEP  368 (408)
T ss_dssp             -CCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC---
T ss_pred             -CcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCc
Confidence             223444443111255678888999777787788899999998764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=94.05  E-value=3.6  Score=37.82  Aligned_cols=112  Identities=12%  Similarity=0.082  Sum_probs=66.0

Q ss_pred             ceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCC
Q 044435          207 GAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYG  286 (378)
Q Consensus       207 ~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~  286 (378)
                      ++.++|.....+..++      .|..+|+.+.+.... +..+..     .. .....+|.+.++...++.+.+|.+... 
T Consensus       284 ~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~-~~~~~~-----~v-~~~~~~~~~l~~~~~dg~i~vwd~~~~-  349 (445)
T 2ovr_B          284 SLQFDGIHVVSGSLDT------SIRVWDVETGNCIHT-LTGHQS-----LT-SGMELKDNILVSGNADSTVKIWDIKTG-  349 (445)
T ss_dssp             EEEECSSEEEEEETTS------CEEEEETTTCCEEEE-ECCCCS-----CE-EEEEEETTEEEEEETTSCEEEEETTTC-
T ss_pred             EEEECCCEEEEEeCCC------eEEEEECCCCCEEEE-EcCCcc-----cE-EEEEEeCCEEEEEeCCCeEEEEECCCC-
Confidence            4555777766666553      699999987654332 111111     11 222335666666666779999988652 


Q ss_pred             CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                           .....+.. ......+.++.-+++.++....++.+..||+++++...
T Consensus       350 -----~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~  396 (445)
T 2ovr_B          350 -----QCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR  396 (445)
T ss_dssp             -----CEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             -----cEEEEEccCCCCCCCEEEEEECCCEEEEEeCCCeEEEEECCCCceee
Confidence                 22334432 11112233444467877777778889999999887543

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=93.94  E-value=2.7  Score=37.17  Aligned_cols=139  Identities=9%  Similarity=0.027  Sum_probs=83.0

Q ss_pred             ceEEEEEEcCCCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCC
Q 044435          172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGF  248 (378)
Q Consensus       172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~  248 (378)
                      ...+.+|+..++.|+.....   ..  ..  ..-.++.  -+|.+...+..+.      .|..+|+.+.++... .+...
T Consensus        29 d~~v~i~~~~~~~~~~~~~~---~~--h~--~~v~~~~~~~~~~~l~~~~~dg------~i~vwd~~~~~~~~~~~~~~~   95 (372)
T 1k8k_C           29 NHEVHIYEKSGNKWVQVHEL---KE--HN--GQVTGVDWAPDSNRIVTCGTDR------NAYVWTLKGRTWKPTLVILRI   95 (372)
T ss_dssp             SSEEEEEEEETTEEEEEEEE---EC--CS--SCEEEEEEETTTTEEEEEETTS------CEEEEEEETTEEEEEEECCCC
T ss_pred             CCEEEEEeCCCCcEEeeeee---cC--CC--CcccEEEEeCCCCEEEEEcCCC------eEEEEECCCCeeeeeEEeecC
Confidence            35688888888876655433   11  00  0011222  2466555555442      688999988776544 33322


Q ss_pred             CCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435          249 GNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHC  326 (378)
Q Consensus       249 ~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~  326 (378)
                      ..     .+..+... +|++.++...++.+.+|.++..   ..|.....+.. ......-+.+.++|..++....++.+.
T Consensus        96 ~~-----~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~  167 (372)
T 1k8k_C           96 NR-----AARCVRWAPNEKKFAVGSGSRVISICYFEQE---NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCR  167 (372)
T ss_dssp             SS-----CEEEEEECTTSSEEEEEETTSSEEEEEEETT---TTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CC-----ceeEEEECCCCCEEEEEeCCCEEEEEEecCC---CcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEE
Confidence            11     11023333 6777777777779999999863   34655555543 232366677888888777777777899


Q ss_pred             EEECC
Q 044435          327 WYHLD  331 (378)
Q Consensus       327 ~ydl~  331 (378)
                      .||++
T Consensus       168 ~~d~~  172 (372)
T 1k8k_C          168 IFSAY  172 (372)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99954

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=93.93  E-value=3.1  Score=36.67  Aligned_cols=171  Identities=8%  Similarity=0.052  Sum_probs=90.5

Q ss_pred             eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC-CCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCC
Q 044435          146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK-VNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQD  223 (378)
Q Consensus       146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~-~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~  223 (378)
                      ...+.++|...   ++.. .    .....+.+|+.. ++......... .+.  ... ...-.+.-+|. +|....... 
T Consensus       143 ~~~~~~spdg~---l~v~-~----~~~~~v~~~~~~~~g~~~~~~~~~-~~~--g~~-p~~~~~spdg~~l~v~~~~~~-  209 (347)
T 3hfq_A          143 IHYTDLTPDNR---LAVI-D----LGSDKVYVYNVSDAGQLSEQSVLT-MEA--GFG-PRHLVFSPDGQYAFLAGELSS-  209 (347)
T ss_dssp             EEEEEECTTSC---EEEE-E----TTTTEEEEEEECTTSCEEEEEEEE-CCT--TCC-EEEEEECTTSSEEEEEETTTT-
T ss_pred             ceEEEECCCCc---EEEE-e----CCCCEEEEEEECCCCcEEEeeeEE-cCC--CCC-CceEEECCCCCEEEEEeCCCC-
Confidence            44567777655   2221 1    113468888887 56555433210 011  000 00012223677 555443332 


Q ss_pred             cccceEEEEEEcC--Cceeeee----cCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEE
Q 044435          224 EMINDLILAFDLN--IETFYSM----PMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF  295 (378)
Q Consensus       224 ~~~~~~i~~fD~~--~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~  295 (378)
                           .|..||+.  +.++..+    ..|......  .....++.. +|+ |++....+..+.+|.++..   ..+..+.
T Consensus       210 -----~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~--~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~---g~~~~~~  279 (347)
T 3hfq_A          210 -----QIASLKYDTQTGAFTQLGIVKTIPADYTAH--NGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTAD---GHLTLIQ  279 (347)
T ss_dssp             -----EEEEEEEETTTTEEEEEEEEESSCTTCCSC--CEEEEEEECTTSCEEEEEEETTTEEEEEEECGG---GCEEEEE
T ss_pred             -----EEEEEEecCCCCceEEeeeeeecCCCCCCC--CcceeEEECCCCCEEEEEeCCCCEEEEEEECCC---CcEEEeE
Confidence                 45555554  4665433    334321111  111134443 675 6666666669999999853   2466666


Q ss_pred             EecC-CCceeEEEEEEeCCCEEEEEeCC-CeEEEE--ECCCCeEEEEeE
Q 044435          296 TMNE-NGYRVIPLAFSSRGDKVLFQKNS-KDHCWY--HLDMHRVESFLV  340 (378)
Q Consensus       296 ~i~~-~~~~~~~~~~~~~g~~v~~~~~~-~~~~~y--dl~~~~~~~v~~  340 (378)
                      .++. .. ...-+++.++|..+++...+ ..+.+|  |.++++++.+.-
T Consensus       280 ~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~~~  327 (347)
T 3hfq_A          280 QISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLLQK  327 (347)
T ss_dssp             EEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred             EEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEeccc
Confidence            6654 22 24467788899977776654 556666  888999998853

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=93.93  E-value=0.61  Score=40.27  Aligned_cols=108  Identities=10%  Similarity=-0.066  Sum_probs=69.0

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      .++.||..++..+      .|..+|+.+++- ..+ +|...     +.. .++..+++|+++...+..  +|+.+-    
T Consensus        63 ~~~~Ly~stG~~g------~v~~iD~~Tgkv~~~~-l~~~~-----Fge-Git~~g~~Ly~ltw~~~~--v~V~D~----  123 (268)
T 3nok_A           63 HQGHFFESTGHQG------TLRQLSLESAQPVWME-RLGNI-----FAE-GLASDGERLYQLTWTEGL--LFTWSG----  123 (268)
T ss_dssp             ETTEEEEEETTTT------EEEECCSSCSSCSEEE-ECTTC-----CEE-EEEECSSCEEEEESSSCE--EEEEET----
T ss_pred             ECCEEEEEcCCCC------EEEEEECCCCcEEeEE-CCCCc-----cee-EEEEeCCEEEEEEccCCE--EEEEEC----
Confidence            3567777666553      599999988765 344 66432     222 466678899998765554  445553    


Q ss_pred             cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE-EEeE
Q 044435          289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE-SFLV  340 (378)
Q Consensus       289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~-~v~~  340 (378)
                      .+-.++.+|+. ..    ..|+..+|+.+++.....++..+|++|.+.. .|..
T Consensus       124 ~Tl~~~~ti~~~~e----GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A          124 MPPQRERTTRYSGE----GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             TTTEEEEEEECSSC----CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             CcCcEEEEEeCCCc----eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            23556666765 32    2455567886777766677999999997644 4443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=93.77  E-value=3.4  Score=36.62  Aligned_cols=183  Identities=10%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435          114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN  193 (378)
Q Consensus       114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~  193 (378)
                      ..+..+.|||..++++..........   ......+.+.|.. .+-+.+ .      ....+.+++..++.++.+...  
T Consensus        35 ~~D~~i~iw~~~~~~~~~~~~~~~~h---~~~v~~~~~sp~g-~~l~s~-s------~D~~v~iw~~~~~~~~~~~~~--  101 (345)
T 3fm0_A           35 GGDRRIRIWGTEGDSWICKSVLSEGH---QRTVRKVAWSPCG-NYLASA-S------FDATTCIWKKNQDDFECVTTL--  101 (345)
T ss_dssp             ETTSCEEEEEEETTEEEEEEEECSSC---SSCEEEEEECTTS-SEEEEE-E------TTSCEEEEEECCC-EEEEEEE--
T ss_pred             cCCCeEEEEEcCCCcceeeeeecccc---CCcEEEEEECCCC-CEEEEE-E------CCCcEEEEEccCCCeEEEEEc--
Confidence            45666788888877654221111111   2234456666643 332222 2      123567777776665443222  


Q ss_pred             CCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-eeee-cCCCCCCCCCCcccceEEEE-CCeEE
Q 044435          194 FPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-FYSM-PMPGFGNEGGGGELSGVYVL-KGCLS  268 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~  268 (378)
                       ..  ..  ..-.++.+  +|.+...+..+.      .|..+|+.++. ...+ .+..+..     .+..+... +|.+.
T Consensus       102 -~~--h~--~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~~~~h~~-----~v~~~~~~p~~~~l  165 (345)
T 3fm0_A          102 -EG--HE--NEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSVLNSHTQ-----DVKHVVWHPSQELL  165 (345)
T ss_dssp             -CC--CS--SCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEEECCCCS-----CEEEEEECSSSSCE
T ss_pred             -cC--CC--CCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEEecCcCC-----CeEEEEECCCCCEE
Confidence             10  00  00012222  466555555442      68888886542 2222 2222111     11023332 57777


Q ss_pred             EEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435          269 LLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL  330 (378)
Q Consensus       269 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl  330 (378)
                      +....++.+.+|.+..    ..|.....+.. .. ...-+.+.++|..++....++.+..+|.
T Consensus       166 ~s~s~d~~i~~w~~~~----~~~~~~~~~~~h~~-~v~~l~~sp~g~~l~s~s~D~~v~iW~~  223 (345)
T 3fm0_A          166 ASASYDDTVKLYREEE----DDWVCCATLEGHES-TVWSLAFDPSGQRLASCSDDRTVRIWRQ  223 (345)
T ss_dssp             EEEETTSCEEEEEEET----TEEEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEE
T ss_pred             EEEeCCCcEEEEEecC----CCEEEEEEecCCCC-ceEEEEECCCCCEEEEEeCCCeEEEecc
Confidence            7777777999998875    35776666665 32 2566788888987777777777888874

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=93.72  E-value=3.8  Score=37.03  Aligned_cols=203  Identities=10%  Similarity=0.011  Sum_probs=104.7

Q ss_pred             cce-EEEeecCCcEEEEcCcccceeecCCCC-CCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          107 NGL-LALKNYPKGIILLNPLTKKHRVLPKFY-RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       107 ~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~-~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      +|- |+....+..+.|||..++....-...+ .....+......+.+.+....+-+.+ .      ....+.+++.+++.
T Consensus        93 ~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~-~------~dg~i~iwd~~~~~  165 (402)
T 2aq5_A           93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSA-G------CDNVILVWDVGTGA  165 (402)
T ss_dssp             CTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEE-E------TTSCEEEEETTTTE
T ss_pred             CCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEE-c------CCCEEEEEECCCCC
Confidence            443 444445667889998887532110000 00001122344566666543433332 2      12458888888775


Q ss_pred             EEecCc-ccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeec-CCCCCCCCCCcccceE
Q 044435          185 WRRIKN-IKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMP-MPGFGNEGGGGELSGV  260 (378)
Q Consensus       185 W~~~~~-~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~~~l  260 (378)
                      ....-. .   ..     ...-.++.+  +|.....+..+.      .|..+|+.+.+....- ......    ... .+
T Consensus       166 ~~~~~~~~---~~-----~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~~~~~~----~~~-~~  226 (402)
T 2aq5_A          166 AVLTLGPD---VH-----PDTIYSVDWSRDGALICTSCRDK------RVRVIEPRKGTVVAEKDRPHEGT----RPV-HA  226 (402)
T ss_dssp             EEEEECTT---TC-----CSCEEEEEECTTSSCEEEEETTS------EEEEEETTTTEEEEEEECSSCSS----SCC-EE
T ss_pred             ccEEEecC---CC-----CCceEEEEECCCCCEEEEEecCC------cEEEEeCCCCceeeeeccCCCCC----cce-EE
Confidence            432210 0   00     000012222  566666655543      7999999876653321 221111    011 23


Q ss_pred             EEE-CCeEEEEE---cCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe-
Q 044435          261 YVL-KGCLSLLC---KYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR-  334 (378)
Q Consensus       261 ~~~-~G~L~~~~---~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~-  334 (378)
                      ... +|++.++.   ..++.+.+|.+.....   =.....++. ......+.+.++|..+++.. .++.+..||+++++ 
T Consensus       227 ~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~---~~~~~~~~~-~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~  302 (402)
T 2aq5_A          227 VFVSEGKILTTGFSRMSERQVALWDTKHLEE---PLSLQELDT-SSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAP  302 (402)
T ss_dssp             EECSTTEEEEEEECTTCCEEEEEEETTBCSS---CSEEEECCC-CSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred             EEcCCCcEEEEeccCCCCceEEEEcCccccC---CceEEeccC-CCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence            333 67777666   3445999999876321   111222332 11244567788898776665 46679999999887 


Q ss_pred             -EEEEe
Q 044435          335 -VESFL  339 (378)
Q Consensus       335 -~~~v~  339 (378)
                       ++.+.
T Consensus       303 ~~~~l~  308 (402)
T 2aq5_A          303 FLHYLS  308 (402)
T ss_dssp             CEEEEE
T ss_pred             ceEeec
Confidence             66663

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=93.58  E-value=3.9  Score=36.59  Aligned_cols=190  Identities=7%  Similarity=-0.093  Sum_probs=95.1

Q ss_pred             eeccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          104 GSCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       104 ~s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      -+.+|-.++. ..+..+.|||..+++....-...      ......+.+.+..+.+-+.+ ..      ...+.+++.++
T Consensus       147 ~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h------~~~v~~v~~s~~~~~~~~s~-~~------dg~v~~wd~~~  213 (357)
T 4g56_B          147 VFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH------SSEVNCVAACPGKDTIFLSC-GE------DGRILLWDTRK  213 (357)
T ss_dssp             ECSSSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTCSSCEEEE-ET------TSCEEECCTTS
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCC------CCCEEEEEEccCCCceeeee-cc------CCceEEEECCC
Confidence            3446654444 45667899999988765332211      11233455555444433322 21      23577777766


Q ss_pred             CcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccc
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELS  258 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~  258 (378)
                      +.-...-..       ........++.+   ++.+...+..+.      .|..+|+.+.+... +.....       .+.
T Consensus       214 ~~~~~~~~~-------~~~~~~v~~v~~sp~~~~~la~g~~d~------~i~~wd~~~~~~~~~~~~~~~-------~v~  273 (357)
T 4g56_B          214 PKPATRIDF-------CASDTIPTSVTWHPEKDDTFACGDETG------NVSLVNIKNPDSAQTSAVHSQ-------NIT  273 (357)
T ss_dssp             SSCBCBCCC-------TTCCSCEEEEEECTTSTTEEEEEESSS------CEEEEESSCGGGCEEECCCSS-------CEE
T ss_pred             Cceeeeeee-------ccccccccchhhhhcccceEEEeeccc------ceeEEECCCCcEeEEEeccce-------eEE
Confidence            432111100       000001112333   244554444432      68889987754322 222111       111


Q ss_pred             eEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCC
Q 044435          259 GVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       259 ~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      .+... +| ++.+....++.+.||-++.      -..+..+.... ...-+++++ ++..++-...++.+..+|+.+.
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~------~~~~~~~~H~~-~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADF------SEVFRDLSHRD-FVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTS------CEEEEECCCSS-CEEEEEECSSSTTEEEEEETTSCEEEEECC--
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCC------CcEeEECCCCC-CEEEEEEeCCCCCEEEEEcCCCeEEEEECCCC
Confidence            34443 45 5555555667999996653      12223333221 255677776 7886666777888999998653

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=93.48  E-value=3.6  Score=35.86  Aligned_cols=199  Identities=9%  Similarity=0.073  Sum_probs=99.8

Q ss_pred             eccc-eEEEee-cCCcEEEEcCcccce-eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435          105 SCNG-LLALKN-YPKGIILLNPLTKKH-RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK  181 (378)
Q Consensus       105 s~~G-Ll~l~~-~~~~~~V~NP~t~~~-~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~  181 (378)
                      +-+| .+.+.. ....+.++|+.+++. ........     ... .++.+++... +-+  ...  .......+.+|+..
T Consensus        48 s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-----~~~-~~~~~s~dg~-~l~--~~~--~~~~~~~i~v~d~~  116 (331)
T 3u4y_A           48 TSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQ-----SSM-ADVDITPDDQ-FAV--TVT--GLNHPFNMQSYSFL  116 (331)
T ss_dssp             CSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECS-----SCC-CCEEECTTSS-EEE--ECC--CSSSSCEEEEEETT
T ss_pred             cCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCC-----CCc-cceEECCCCC-EEE--Eec--CCCCcccEEEEECC
Confidence            3344 344444 466899999999875 22211111     111 1255555432 222  211  11122378899988


Q ss_pred             CCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceE-EEEEEcCCce-ee---eecCCCCCCCCCCc
Q 044435          182 VNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDL-ILAFDLNIET-FY---SMPMPGFGNEGGGG  255 (378)
Q Consensus       182 ~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~-i~~fD~~~~~-~~---~i~lP~~~~~~~~~  255 (378)
                      ++.-...  .   +.  .... ..-.+.-+|. +|.......      . |..||+.... ..   ...++....     
T Consensus       117 ~~~~~~~--~---~~--~~~~-~~~~~spdg~~l~~~~~~~~------~~i~~~~~~~~g~~~~~~~~~~~~~~~-----  177 (331)
T 3u4y_A          117 KNKFIST--I---PI--PYDA-VGIAISPNGNGLILIDRSSA------NTVRRFKIDADGVLFDTGQEFISGGTR-----  177 (331)
T ss_dssp             TTEEEEE--E---EC--CTTE-EEEEECTTSSCEEEEEETTT------TEEEEEEECTTCCEEEEEEEEECSSSS-----
T ss_pred             CCCeEEE--E---EC--CCCc-cceEECCCCCEEEEEecCCC------ceEEEEEECCCCcEeecCCccccCCCC-----
Confidence            7754332  1   11  1000 0112223565 555544432      4 7777765321 10   111122111     


Q ss_pred             ccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECC
Q 044435          256 ELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLD  331 (378)
Q Consensus       256 ~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~  331 (378)
                      -. .+... +|+ |++.......+.+|.++...   .=..+..++. ..  ..-+.+.++|..+++... +..+..||++
T Consensus       178 ~~-~~~~spdg~~l~v~~~~~~~v~v~d~~~~~---~~~~~~~~~~~~~--~~~~~~spdg~~l~v~~~~~~~i~~~d~~  251 (331)
T 3u4y_A          178 PF-NITFTPDGNFAFVANLIGNSIGILETQNPE---NITLLNAVGTNNL--PGTIVVSRDGSTVYVLTESTVDVFNFNQL  251 (331)
T ss_dssp             EE-EEEECTTSSEEEEEETTTTEEEEEECSSTT---SCEEEEEEECSSC--CCCEEECTTSSEEEEECSSEEEEEEEETT
T ss_pred             cc-ceEECCCCCEEEEEeCCCCeEEEEECCCCc---ccceeeeccCCCC--CceEEECCCCCEEEEEEcCCCEEEEEECC
Confidence            11 33443 565 66666666689999877421   1112344444 22  334778889996666654 3459999999


Q ss_pred             CCeEEEEe
Q 044435          332 MHRVESFL  339 (378)
Q Consensus       332 ~~~~~~v~  339 (378)
                      +++++.+.
T Consensus       252 ~~~~~~~~  259 (331)
T 3u4y_A          252 SGTLSFVK  259 (331)
T ss_dssp             TTEEEEEE
T ss_pred             CCceeeec
Confidence            99987663

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=93.34  E-value=4.7  Score=36.81  Aligned_cols=199  Identities=13%  Similarity=0.097  Sum_probs=103.7

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      |.+++|.+. .+..++|||..|++...+-....+    ......+.|.+. +.|-+++-       ....+.+++..++.
T Consensus       114 S~~n~lAvg-ld~tV~lWd~~tg~~~~~~~~~~~----~~~V~sv~fspd-g~~lasgs-------~Dg~v~iWd~~~~~  180 (420)
T 4gga_A          114 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKE-GNYLAVGT-------SSAEVQLWDVQQQK  180 (420)
T ss_dssp             CTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTT-SSEEEEEE-------TTSCEEEEETTTTE
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC----CCcEEEEEECCC-CCEEEEEE-------CCCeEEEEEcCCCc
Confidence            345665544 467899999999987765433221    112345666664 34433332       13468888887764


Q ss_pred             EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-E
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-L  263 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~  263 (378)
                      -...  .   .    .......++..++.+...+..+.      .+..+|..........+..+...    .. .+.. .
T Consensus       181 ~~~~--~---~----~h~~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~~~~~~~~~h~~~----~~-~~~~~~  240 (420)
T 4gga_A          181 RLRN--M---T----SHSARVGSLSWNSYILSSGSRSG------HIHHHDVRVAEHHVATLSGHSQE----VC-GLRWAP  240 (420)
T ss_dssp             EEEE--E---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTSSSCEEEEEECCSSC----EE-EEEECT
T ss_pred             EEEE--E---e----CCCCceEEEeeCCCEEEEEeCCC------ceeEeeecccceeeEEecccccc----ee-eeeecC
Confidence            2211  1   0    00111224566777666655543      68888877654433322222211    11 2222 2


Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCC-CEEEEEe--CCCeEEEEECCCCeEEEE
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRG-DKVLFQK--NSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g-~~v~~~~--~~~~~~~ydl~~~~~~~v  338 (378)
                      +|...+....++.+.||.......  .+...............+++.+++ .++....  .++.+..||+.+++....
T Consensus       241 ~g~~l~s~~~D~~v~i~~~~~~~~--~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~  316 (420)
T 4gga_A          241 DGRHLASGGNDNLVNVWPSAPGEG--GWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSA  316 (420)
T ss_dssp             TSSEEEEEETTSCEEEEESSCCSS--CSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEE
T ss_pred             CCCeeeeeeccccceEEeeccccc--cceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcccccee
Confidence            577777777777999998875321  222222222211113445555533 3344433  245688888888775544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=93.31  E-value=4.7  Score=36.78  Aligned_cols=195  Identities=12%  Similarity=0.011  Sum_probs=96.7

Q ss_pred             ccceEE-EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGLLA-LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GLl~-l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|-++ ....+..+.|||..+++....-...      ......+.+.+.. .+ ++...      ....+.+++..++.
T Consensus       160 ~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h------~~~V~~v~~~p~~-~~-l~s~s------~D~~i~~wd~~~~~  225 (410)
T 1vyh_C          160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGH------DHNVSSVSIMPNG-DH-IVSAS------RDKTIKMWEVQTGY  225 (410)
T ss_dssp             TTSSEEEEEETTSCCCEEETTSSCEEECCCCC------SSCEEEEEECSSS-SE-EEEEE------TTSEEEEEETTTCC
T ss_pred             CCCCEEEEEeCCCeEEEEeCCCCceeEEEcCC------CCCEEEEEEeCCC-CE-EEEEe------CCCeEEEEECCCCc
Confidence            344433 3345667889998877654322111      1224456666543 33 22222      23468888887754


Q ss_pred             EEe-cCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCC----CC-----
Q 044435          185 WRR-IKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNE----GG-----  253 (378)
Q Consensus       185 W~~-~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~----~~-----  253 (378)
                      -.. ....   ..  ..   ..-...-+|.+...+..+.      .|..+|+.+.+.... .-....-.    .+     
T Consensus       226 ~~~~~~~h---~~--~v---~~~~~~~~g~~l~s~s~D~------~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  291 (410)
T 1vyh_C          226 CVKTFTGH---RE--WV---RMVRPNQDGTLIASCSNDQ------TVRVWVVATKECKAELREHRHVVECISWAPESSYS  291 (410)
T ss_dssp             EEEEEECC---SS--CE---EEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGG
T ss_pred             EEEEEeCC---Cc--cE---EEEEECCCCCEEEEEcCCC------eEEEEECCCCceeeEecCCCceEEEEEEcCccccc
Confidence            221 1111   00  00   0001112466555555442      688888876544322 11000000    00     


Q ss_pred             ------CcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435          254 ------GGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCW  327 (378)
Q Consensus       254 ------~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  327 (378)
                            .... ......|.+.+....++.+.+|-+...      ..+..+........-+.++++|..++-...++.+..
T Consensus       292 ~~~~~~~~~~-~~~~~~g~~l~sgs~D~~i~iwd~~~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~v  364 (410)
T 1vyh_C          292 SISEATGSET-KKSGKPGPFLLSGSRDKTIKMWDVSTG------MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRV  364 (410)
T ss_dssp             GGGGCCSCC--------CCEEEEEETTSEEEEEETTTT------EEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEE
T ss_pred             chhhhccccc-cccCCCCCEEEEEeCCCeEEEEECCCC------ceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEE
Confidence                  0000 001113666677767779999987641      223333331112556777888887777777888999


Q ss_pred             EECCCCeE
Q 044435          328 YHLDMHRV  335 (378)
Q Consensus       328 ydl~~~~~  335 (378)
                      ||+++++.
T Consensus       365 wd~~~~~~  372 (410)
T 1vyh_C          365 WDYKNKRC  372 (410)
T ss_dssp             ECCTTSCC
T ss_pred             EECCCCce
Confidence            99987763

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=93.19  E-value=4.1  Score=35.76  Aligned_cols=198  Identities=12%  Similarity=0.077  Sum_probs=99.7

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~  188 (378)
                      +|+....+..+.|||..+++....-...      ......+.+.+..+.+-+.+.       ....+.+|+..++.-...
T Consensus        87 ~l~~~~~dg~i~v~d~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~l~s~~-------~dg~i~iwd~~~~~~~~~  153 (366)
T 3k26_A           87 LLAVAGSRGIIRIINPITMQCIKHYVGH------GNAINELKFHPRDPNLLLSVS-------KDHALRLWNIQTDTLVAI  153 (366)
T ss_dssp             EEEEEETTCEEEEECTTTCCEEEEEESC------CSCEEEEEECSSCTTEEEEEE-------TTSCEEEEETTTTEEEEE
T ss_pred             EEEEecCCCEEEEEEchhceEeeeecCC------CCcEEEEEECCCCCCEEEEEe-------CCCeEEEEEeecCeEEEE
Confidence            3444456677899999887754332211      223446677664444433332       134688888877643222


Q ss_pred             -CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-c--------------------
Q 044435          189 -KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-P--------------------  244 (378)
Q Consensus       189 -~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~--------------------  244 (378)
                       ...   ..  .  ...-.++.+  +|.....+..++      .|..+|+.+.+.... .                    
T Consensus       154 ~~~~---~~--~--~~~v~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (366)
T 3k26_A          154 FGGV---EG--H--RDEVLSADYDLLGEKIMSCGMDH------SLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIH  220 (366)
T ss_dssp             ECST---TS--C--SSCEEEEEECTTSSEEEEEETTS------CEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEEC
T ss_pred             eccc---cc--c--cCceeEEEECCCCCEEEEecCCC------CEEEEECCCCccccccceeEEecCCCCcccccceeec
Confidence             110   00  0  000012222  355555554432      688999887543211 1                    


Q ss_pred             CCCCCC-CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC--------CcceEEEEEecC-CCceeEEEEEEeC--
Q 044435          245 MPGFGN-EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV--------KDSWSKLFTMNE-NGYRVIPLAFSSR--  312 (378)
Q Consensus       245 lP~~~~-~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~--------~~~W~~~~~i~~-~~~~~~~~~~~~~--  312 (378)
                      .|.... ......+..+... |.+.+....++.+.+|.+.....        .........+.. .. ....+++.++  
T Consensus       221 ~~~~~~~~~~~~~v~~~~~~-~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~  298 (366)
T 3k26_A          221 FPDFSTRDIHRNYVDCVRWL-GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFW  298 (366)
T ss_dssp             CCSEEECSSCSSCCCEEEEE-TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTT
T ss_pred             cCccccccCCcceEEEEEEc-CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCC
Confidence            000000 0000111133333 66666666677999999875321        112233333333 11 1333455666  


Q ss_pred             CCEEEEEeCCCeEEEEECCCCe
Q 044435          313 GDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       313 g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      |..++....++.+..||+++++
T Consensus       299 ~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             SSEEEEECTTSCEEEEECCSSS
T ss_pred             CcEEEEEecCCcEEEEECCCCC
Confidence            8877777777789999999864

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=93.18  E-value=6.8  Score=39.10  Aligned_cols=185  Identities=5%  Similarity=-0.024  Sum_probs=94.9

Q ss_pred             EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-Cc
Q 044435          112 LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KN  190 (378)
Q Consensus       112 l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~  190 (378)
                      ....+..+.|||..+++...--...      ......+.+.+.. .+-+ ...      ....+.+|+..++..... ..
T Consensus        30 ~~~~~g~v~iwd~~~~~~~~~~~~~------~~~v~~~~~s~~~-~~l~-~~~------~dg~i~vw~~~~~~~~~~~~~   95 (814)
T 3mkq_A           30 TTLYSGRVEIWNYETQVEVRSIQVT------ETPVRAGKFIARK-NWII-VGS------DDFRIRVFNYNTGEKVVDFEA   95 (814)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECC------SSCEEEEEEEGGG-TEEE-EEE------TTSEEEEEETTTCCEEEEEEC
T ss_pred             EEeCCCEEEEEECCCCceEEEEecC------CCcEEEEEEeCCC-CEEE-EEe------CCCeEEEEECCCCcEEEEEec
Confidence            3334556788998887654322211      1123456666643 2222 222      135688898887754322 11


Q ss_pred             ccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc-eeeeecCCCCCCCCCCcccceEEEE--CCeE
Q 044435          191 IKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE-TFYSMPMPGFGNEGGGGELSGVYVL--KGCL  267 (378)
Q Consensus       191 ~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L  267 (378)
                      .   ..  ...   .-...-+|.....+..+      ..|..+|+.++ ..... +..+..    .-. .+...  +|.+
T Consensus        96 ~---~~--~v~---~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~-~~~~~~----~v~-~~~~~p~~~~~  155 (814)
T 3mkq_A           96 H---PD--YIR---SIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQT-FEGHEH----FVM-CVAFNPKDPST  155 (814)
T ss_dssp             C---SS--CEE---EEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEE-EECCSS----CEE-EEEEETTEEEE
T ss_pred             C---CC--CEE---EEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEE-EcCCCC----cEE-EEEEEcCCCCE
Confidence            1   00  000   00111245444444433      27889998775 33222 111111    111 33443  4667


Q ss_pred             EEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEe--CCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          268 SLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSS--RGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       268 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~--~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      .++...++.+.+|.+....  ....    +.. .......+.+.+  +|..++....++.+..||+++++..
T Consensus       156 l~~~~~dg~v~vwd~~~~~--~~~~----~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~  221 (814)
T 3mkq_A          156 FASGCLDRTVKVWSLGQST--PNFT----LTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV  221 (814)
T ss_dssp             EEEEETTSEEEEEETTCSS--CSEE----EECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEE
T ss_pred             EEEEeCCCeEEEEECCCCc--ceeE----EecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEE
Confidence            7777777799999886532  1122    222 111244566666  7777777777778999999887743

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=93.11  E-value=4.7  Score=36.25  Aligned_cols=195  Identities=11%  Similarity=0.046  Sum_probs=101.8

Q ss_pred             EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC--cEEe
Q 044435          110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN--LWRR  187 (378)
Q Consensus       110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~--~W~~  187 (378)
                      |+....+..+.+||..+++....-....... +......+.+.+..+.+-+.+ .      ....+.+++.+..  .-+.
T Consensus       173 l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg-s------~D~~v~~wd~~~~~~~~~~  244 (380)
T 3iz6_a          173 LITGSGDQTCVLWDVTTGQRISIFGSEFPSG-HTADVLSLSINSLNANMFISG-S------CDTTVRLWDLRITSRAVRT  244 (380)
T ss_dssp             EEEECTTSCEEEECTTTCCEEEEECCCSSSS-CCSCEEEEEECSSSCCEEEEE-E------TTSCEEEEETTTTCCCCEE
T ss_pred             EEEECCCCcEEEEEcCCCcEEEEeecccCCC-CccCeEEEEeecCCCCEEEEE-E------CCCeEEEEECCCCCcceEE
Confidence            4444466779999999988664322111110 022344555554444433322 2      1345778887532  1111


Q ss_pred             cCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-
Q 044435          188 IKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL-  263 (378)
Q Consensus       188 ~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~-  263 (378)
                      ....          ...-.++.+  +|.....+..+.      .|..+|+.+..-.. +.............+..++.. 
T Consensus       245 ~~~h----------~~~v~~v~~~p~~~~l~s~s~D~------~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  308 (380)
T 3iz6_a          245 YHGH----------EGDINSVKFFPDGQRFGTGSDDG------TCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSI  308 (380)
T ss_dssp             ECCC----------SSCCCEEEECTTSSEEEEECSSS------CEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECS
T ss_pred             ECCc----------CCCeEEEEEecCCCeEEEEcCCC------eEEEEECCCCcEEEEecccccccccccCceEEEEECC
Confidence            1110          000112222  566555554442      69999998765433 333222111100111133333 


Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec---C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN---E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~---~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      +|++.++...++.+.||-+...      .....+.   . ......-+++.++|..++-...++.+..+|+++.+
T Consensus       309 ~g~~l~~g~~dg~i~vwd~~~~------~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          309 SGRLLFAGYSNGDCYVWDTLLA------EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             SSSEEEEECTTSCEEEEETTTC------CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             CCCEEEEEECCCCEEEEECCCC------ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            6888888777789999986542      1222232   1 12235567888899977777777779999988753

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=93.07  E-value=4.5  Score=35.88  Aligned_cols=114  Identities=8%  Similarity=0.008  Sum_probs=67.3

Q ss_pred             CCe-EEEEeecCCCcccceEEEEEEcCCceeeee----cCCCCCCCCCCcccceEEEE-CCe-EEEEEcC-CCcEEEEEe
Q 044435          211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSM----PMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY-SEPWDLWVM  282 (378)
Q Consensus       211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i----~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~-~~~l~iW~l  282 (378)
                      +|. +|......      ..|..||+.++++..+    ..|.....    -. .+... +|+ |++.... ...+.||.+
T Consensus       221 dg~~l~v~~~~~------~~v~v~~~~~g~~~~~~~~~~~~~~~~~----~~-~i~~spdg~~l~v~~~~~~~~i~v~~~  289 (361)
T 3scy_A          221 DGKFAYLINEIG------GTVIAFRYADGMLDEIQTVAADTVNAQG----SG-DIHLSPDGKYLYASNRLKADGVAIFKV  289 (361)
T ss_dssp             TSSEEEEEETTT------CEEEEEEEETTEEEEEEEEESCSSCCCC----EE-EEEECTTSSEEEEEECSSSCEEEEEEE
T ss_pred             CCCEEEEEcCCC------CeEEEEEecCCceEEeEEEecCCCCCCC----cc-cEEECCCCCEEEEECCCCCCEEEEEEE
Confidence            676 45444333      3688899887766544    22322111    11 33443 676 4454444 458999999


Q ss_pred             ccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeE--EEEECCCCeEEEEe
Q 044435          283 KEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDH--CWYHLDMHRVESFL  339 (378)
Q Consensus       283 ~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~--~~ydl~~~~~~~v~  339 (378)
                      +...  ..+..+..+.. ..  ..-+++.++|+.+++... +..+  +.+|+++++++.+.
T Consensus       290 ~~~~--g~~~~~~~~~~g~~--~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~  346 (361)
T 3scy_A          290 DETN--GTLTKVGYQLTGIH--PRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIK  346 (361)
T ss_dssp             CTTT--CCEEEEEEEECSSC--CCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECS
T ss_pred             cCCC--CcEEEeeEecCCCC--CceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecc
Confidence            7422  34666665554 22  345778889997777763 3444  44788899988773

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=93.02  E-value=4.5  Score=35.72  Aligned_cols=95  Identities=11%  Similarity=0.130  Sum_probs=60.0

Q ss_pred             EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435          229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL  307 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~  307 (378)
                      .|..+|+.+++.... +..+..    .-. .+... +|.+.+....++.+.+|-+...      .....+........-+
T Consensus       165 ~i~~wd~~~~~~~~~-~~~h~~----~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~------~~~~~~~~h~~~v~~v  232 (340)
T 1got_B          165 TCALWDIETGQQTTT-FTGHTG----DVM-SLSLAPDTRLFVSGACDASAKLWDVREG------MCRQTFTGHESDINAI  232 (340)
T ss_dssp             CEEEEETTTTEEEEE-ECCCSS----CEE-EEEECTTSSEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEE
T ss_pred             cEEEEECCCCcEEEE-EcCCCC----ceE-EEEECCCCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCcCCEEEE
Confidence            688999987664332 111111    111 33333 6777777777789999987652      2233343311125667


Q ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          308 AFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      ++.++|..++....++.+..||+++++.
T Consensus       233 ~~~p~~~~l~s~s~d~~v~iwd~~~~~~  260 (340)
T 1got_B          233 CFFPNGNAFATGSDDATCRLFDLRADQE  260 (340)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTTEE
T ss_pred             EEcCCCCEEEEEcCCCcEEEEECCCCcE
Confidence            8888999777777788899999988764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=92.94  E-value=3.7  Score=34.54  Aligned_cols=193  Identities=12%  Similarity=0.004  Sum_probs=95.0

Q ss_pred             EeeeccceEEE-ee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435          102 IIGSCNGLLAL-KN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG  179 (378)
Q Consensus       102 ~~~s~~GLl~l-~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys  179 (378)
                      +..+.+|-+.+ .+ ....+.++|+.++....++....      ....++.+|+.. ...|.   . .    ...+.+|+
T Consensus        29 i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~------~~p~~i~~~~~g-~l~v~---~-~----~~~i~~~d   93 (270)
T 1rwi_B           29 VAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGL------YQPQGLAVDGAG-TVYVT---D-F----NNRVVTLA   93 (270)
T ss_dssp             EEECTTCCEEEEECSSSCEEEEECC-----EECCCCSC------CSCCCEEECTTC-CEEEE---E-T----TTEEEEEC
T ss_pred             eEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCc------CCcceeEECCCC-CEEEE---c-C----CCEEEEEe
Confidence            33334566655 43 45678889998877665543221      112256666643 22222   1 0    23577787


Q ss_pred             cCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCccc
Q 044435          180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGEL  257 (378)
Q Consensus       180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~  257 (378)
                      ..++.-......       ..  ....++.+  +|.+|+.....      ..|..||..+......... ....     +
T Consensus        94 ~~~~~~~~~~~~-------~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~~~~~~~~~~~-~~~~-----p  152 (270)
T 1rwi_B           94 AGSNNQTVLPFD-------GL--NYPEGLAVDTQGAVYVADRGN------NRVVKLAAGSKTQTVLPFT-GLND-----P  152 (270)
T ss_dssp             TTCSCCEECCCC-------SC--SSEEEEEECTTCCEEEEEGGG------TEEEEECTTCCSCEECCCC-SCCS-----C
T ss_pred             CCCceEeeeecC-------Cc--CCCcceEECCCCCEEEEECCC------CEEEEEECCCceeEeeccc-cCCC-----c
Confidence            766543333211       00  01123333  68877765443      2688888776544332211 1111     1


Q ss_pred             ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCe
Q 044435          258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHR  334 (378)
Q Consensus       258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~  334 (378)
                      ..++.. +|+|++.......+.+|..+..   ...    .... ......-+++.++|. +++... ...+..||++++.
T Consensus       153 ~~i~~~~~g~l~v~~~~~~~i~~~~~~~~---~~~----~~~~~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~~~~  224 (270)
T 1rwi_B          153 DGVAVDNSGNVYVTDTDNNRVVKLEAESN---NQV----VLPFTDITAPWGIAVDEAGT-VYVTEHNTNQVVKLLAGSTT  224 (270)
T ss_dssp             CCEEECTTCCEEEEEGGGTEEEEECTTTC---CEE----ECCCSSCCSEEEEEECTTCC-EEEEETTTSCEEEECTTCSC
T ss_pred             eeEEEeCCCCEEEEECCCCEEEEEecCCC---ceE----eecccCCCCceEEEECCCCC-EEEEECCCCcEEEEcCCCCc
Confidence            034444 6888887765556665544321   111    1111 222244466666776 666654 4569999998876


Q ss_pred             EEEE
Q 044435          335 VESF  338 (378)
Q Consensus       335 ~~~v  338 (378)
                      ...+
T Consensus       225 ~~~~  228 (270)
T 1rwi_B          225 STVL  228 (270)
T ss_dssp             CEEC
T ss_pred             ceee
Confidence            5544

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=92.89  E-value=4.2  Score=35.04  Aligned_cols=189  Identities=12%  Similarity=0.012  Sum_probs=92.5

Q ss_pred             EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC-CcEEec
Q 044435          110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV-NLWRRI  188 (378)
Q Consensus       110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~-~~W~~~  188 (378)
                      |........++++|+.|++.+.-=+.+...   ...  ...+.+.. .  ++. ..      ...+..|+... -.|+..
T Consensus         8 lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~---~~~--~~~~~pdG-~--ilv-s~------~~~V~~~d~~G~~~W~~~   72 (276)
T 3no2_A            8 LVGGSGWNKIAIINKDTKEIVWEYPLEKGW---ECN--SVAATKAG-E--ILF-SY------SKGAKMITRDGRELWNIA   72 (276)
T ss_dssp             EEECTTCSEEEEEETTTTEEEEEEECCTTC---CCC--EEEECTTS-C--EEE-EC------BSEEEEECTTSCEEEEEE
T ss_pred             EEeeCCCCEEEEEECCCCeEEEEeCCCccC---CCc--CeEECCCC-C--EEE-eC------CCCEEEECCCCCEEEEEc
Confidence            333345677889999998855332221100   111  23334432 2  222 11      23577888722 357754


Q ss_pred             CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE-EECCeE
Q 044435          189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY-VLKGCL  267 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~-~~~G~L  267 (378)
                      ...   ..  .   .....+.-||.++.......     ..|+.||...+....+.+....... ......+. ..+|.+
T Consensus        73 ~~~---~~--~---~~~~~~~~dG~~lv~~~~~~-----~~v~~vd~~Gk~l~~~~~~~~~~~~-~~~~~~v~~~~~G~~  138 (276)
T 3no2_A           73 APA---GC--E---MQTARILPDGNALVAWCGHP-----STILEVNMKGEVLSKTEFETGIERP-HAQFRQINKNKKGNY  138 (276)
T ss_dssp             CCT---TC--E---EEEEEECTTSCEEEEEESTT-----EEEEEECTTSCEEEEEEECCSCSSG-GGSCSCCEECTTSCE
T ss_pred             CCC---Cc--c---ccccEECCCCCEEEEecCCC-----CEEEEEeCCCCEEEEEeccCCCCcc-cccccCceECCCCCE
Confidence            321   00  1   11223456788777654412     3789999866544444443221110 00000112 236777


Q ss_pred             EEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          268 SLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       268 ~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      .++...+.++..|-.+  + +..|+...  .. .  ..-.....+|++++......+++.+|++|++.
T Consensus       139 lv~~~~~~~v~~~d~~--G-~~~w~~~~--~~-~--~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          139 LVPLFATSEVREIAPN--G-QLLNSVKL--SG-T--PFSSAFLDNGDCLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             EEEETTTTEEEEECTT--S-CEEEEEEC--SS-C--CCEEEECTTSCEEEECBTTSEEEEECTTTCCE
T ss_pred             EEEecCCCEEEEECCC--C-CEEEEEEC--CC-C--ccceeEcCCCCEEEEeCCCCeEEEEeCcCCcE
Confidence            6666555565554443  2 34565322  11 1  11233345788666565566799999996654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=92.85  E-value=5  Score=35.83  Aligned_cols=196  Identities=11%  Similarity=0.018  Sum_probs=97.3

Q ss_pred             ecCCcEEEEcCcccceeecCCCC-------CCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          114 NYPKGIILLNPLTKKHRVLPKFY-------RDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       114 ~~~~~~~V~NP~t~~~~~LP~~~-------~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      ..+..+.|||..+++........       ............+.+.+..+.+-+.+.       ....+.+|+..++.-.
T Consensus        63 ~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~-------~d~~i~iwd~~~~~~~  135 (408)
T 4a11_B           63 GSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS-------FDKTLKVWDTNTLQTA  135 (408)
T ss_dssp             ETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE-------TTSEEEEEETTTTEEE
T ss_pred             cCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe-------CCCeEEEeeCCCCccc
Confidence            44556778887776543322110       000011223456667664444433331       1346888888776433


Q ss_pred             ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CC
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KG  265 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G  265 (378)
                      ..-..   +.  ........+..-++.+...+..+.      .|..||+.+.+.... +..+..     .+..+... +|
T Consensus       136 ~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~------~v~~~d~~~~~~~~~-~~~~~~-----~v~~~~~~~~~  198 (408)
T 4a11_B          136 DVFNF---EE--TVYSHHMSPVSTKHCLVAVGTRGP------KVQLCDLKSGSCSHI-LQGHRQ-----EILAVSWSPRY  198 (408)
T ss_dssp             EEEEC---SS--CEEEEEECSSCSSCCEEEEEESSS------SEEEEESSSSCCCEE-ECCCCS-----CEEEEEECSSC
T ss_pred             eeccC---CC--ceeeeEeecCCCCCcEEEEEcCCC------eEEEEeCCCcceeee-ecCCCC-----cEEEEEECCCC
Confidence            22111   11  110000011112444555554442      688999887644322 111111     11023333 44


Q ss_pred             e-EEEEEcCCCcEEEEEeccCCCCcceEEEE--------Ee----cCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435          266 C-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF--------TM----NENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM  332 (378)
Q Consensus       266 ~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~--------~i----~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~  332 (378)
                      . +.++...++.+.+|.+......  .....        .+    ........-+.+.++|..++....++.+..||+++
T Consensus       199 ~~ll~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~  276 (408)
T 4a11_B          199 DYILATASADSRVKLWDVRRASGC--LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSN  276 (408)
T ss_dssp             TTEEEEEETTSCEEEEETTCSSCC--SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CcEEEEEcCCCcEEEEECCCCCcc--cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCC
Confidence            4 6667777779999988653210  00000        00    00112255677778898788887788899999998


Q ss_pred             CeE
Q 044435          333 HRV  335 (378)
Q Consensus       333 ~~~  335 (378)
                      .+.
T Consensus       277 ~~~  279 (408)
T 4a11_B          277 GEN  279 (408)
T ss_dssp             CCB
T ss_pred             Ccc
Confidence            764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=92.80  E-value=4.1  Score=34.68  Aligned_cols=192  Identities=9%  Similarity=-0.064  Sum_probs=98.1

Q ss_pred             EeeeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          102 IIGSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       102 ~~~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      +....+|.+.+.. ....++++|| +++...+..+..     .....++.+|+.. ...+   ..    .....+.+|+.
T Consensus       104 i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v---~~----~~~~~i~~~~~  169 (299)
T 2z2n_A          104 ITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNK-----GSYPSFITLGSDN-ALWF---TE----NQNNAIGRITE  169 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSST-----TCCEEEEEECTTS-CEEE---EE----TTTTEEEEECT
T ss_pred             eEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCC-----CCCCceEEEcCCC-CEEE---Ee----CCCCEEEEEcC
Confidence            3333467766665 4567889999 776655432211     1123456666543 2221   11    11235777777


Q ss_pred             CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435          181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS  258 (378)
Q Consensus       181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~  258 (378)
                       ++........    .  ..  ....++.+  +|.+|+.....      ..|..||. ++++..+.+|....     .+.
T Consensus       170 -~g~~~~~~~~----~--~~--~~~~~i~~~~~g~l~v~~~~~------~~i~~~~~-~g~~~~~~~~~~~~-----~~~  228 (299)
T 2z2n_A          170 -SGDITEFKIP----T--PA--SGPVGITKGNDDALWFVEIIG------NKIGRITT-SGEITEFKIPTPNA-----RPH  228 (299)
T ss_dssp             -TCCEEEEECS----S--TT--CCEEEEEECTTSSEEEEETTT------TEEEEECT-TCCEEEEECSSTTC-----CEE
T ss_pred             -CCcEEEeeCC----C--CC--CcceeEEECCCCCEEEEccCC------ceEEEECC-CCcEEEEECCCCCC-----Cce
Confidence             6666553211    1  10  11123433  57876654333      37999999 77777666663222     111


Q ss_pred             eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      .+... +|.|++.......+.+|..+  +   ... ...++........+.+ ++|. +++......+..||+++++++
T Consensus       229 ~i~~~~~g~l~v~~~~~~~i~~~d~~--g---~~~-~~~~~~~~~~~~~i~~-~~g~-l~v~~~~~~l~~~~~~~~~~~  299 (299)
T 2z2n_A          229 AITAGAGIDLWFTEWGANKIGRLTSN--N---IIE-EYPIQIKSAEPHGICF-DGET-IWFAMECDKIGKLTLIKDNME  299 (299)
T ss_dssp             EEEECSTTCEEEEETTTTEEEEEETT--T---EEE-EEECSSSSCCEEEEEE-CSSC-EEEEETTTEEEEEEEC-----
T ss_pred             eEEECCCCCEEEeccCCceEEEECCC--C---ceE-EEeCCCCCCccceEEe-cCCC-EEEEecCCcEEEEEcCcccCC
Confidence            34443 68888877555555555431  1   111 1222221112444555 6777 777765667999999988653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=92.76  E-value=5  Score=35.58  Aligned_cols=199  Identities=12%  Similarity=0.045  Sum_probs=97.3

Q ss_pred             EEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc--CCCcEEecCcccCCCc
Q 044435          119 IILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL--KVNLWRRIKNIKNFPY  196 (378)
Q Consensus       119 ~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~~~~W~~~~~~~~~p~  196 (378)
                      ++.+|+.|++...+......    .+.  .+.+++... + ++.... . ......+.+|+.  .++..+.+...   +.
T Consensus        31 ~~~~d~~~g~~~~~~~~~~~----~p~--~l~~spdg~-~-l~~~~~-~-~~~~~~v~~~~~~~~~g~~~~~~~~---~~   97 (361)
T 3scy_A           31 TFRFNEETGESLPLSDAEVA----NPS--YLIPSADGK-F-VYSVNE-F-SKDQAAVSAFAFDKEKGTLHLLNTQ---KT   97 (361)
T ss_dssp             EEEEETTTCCEEEEEEEECS----CCC--SEEECTTSS-E-EEEEEC-C-SSTTCEEEEEEEETTTTEEEEEEEE---EC
T ss_pred             EEEEeCCCCCEEEeecccCC----CCc--eEEECCCCC-E-EEEEEc-c-CCCCCcEEEEEEeCCCCcEEEeeEe---cc
Confidence            34458888887666543111    112  345555432 2 222221 1 112235555554  44777666543   21


Q ss_pred             cccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc-eeeee----cCCCCCCC--C-CCcccceEEEE-CCe-
Q 044435          197 SWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE-TFYSM----PMPGFGNE--G-GGGELSGVYVL-KGC-  266 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i----~lP~~~~~--~-~~~~~~~l~~~-~G~-  266 (378)
                        .  ......+.++|...+.+....     ..|..||+.+. ....+    ........  . .......+... +|+ 
T Consensus        98 --~--~~~p~~~~~dg~~l~~~~~~~-----~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~  168 (361)
T 3scy_A           98 --M--GADPCYLTTNGKNIVTANYSG-----GSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKY  168 (361)
T ss_dssp             --S--SSCEEEEEECSSEEEEEETTT-----TEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSE
T ss_pred             --C--CCCcEEEEECCCEEEEEECCC-----CEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCE
Confidence              0  111123344777555554432     26888888643 22211    11110000  0 00111023443 675 


Q ss_pred             EEEEEcCCCcEEEEEeccCCCCc--c-eEEE---EEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435          267 LSLLCKYSEPWDLWVMKEYGVKD--S-WSKL---FTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       267 L~~~~~~~~~l~iW~l~~~~~~~--~-W~~~---~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v  338 (378)
                      |++.......+.+|.++......  . ....   ..+.. ......-++++++|..+++.. .+..+.+||+++++++.+
T Consensus       169 l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~  248 (361)
T 3scy_A          169 LLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEI  248 (361)
T ss_dssp             EEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEe
Confidence            66665555689999988643100  1 2221   22222 222245678888999777766 456799999998888766


Q ss_pred             e
Q 044435          339 L  339 (378)
Q Consensus       339 ~  339 (378)
                      .
T Consensus       249 ~  249 (361)
T 3scy_A          249 Q  249 (361)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=92.63  E-value=4.7  Score=35.00  Aligned_cols=143  Identities=8%  Similarity=0.035  Sum_probs=73.2

Q ss_pred             eEEEEEEcC--CCcEEecCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCc-eeeee-cCC
Q 044435          173 IEATVYGLK--VNLWRRIKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIE-TFYSM-PMP  246 (378)
Q Consensus       173 ~~~~vyss~--~~~W~~~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i-~lP  246 (378)
                      ..+.+|+..  ++.++.+...   +.  ..   ....+.  -+|...+.+....     ..|..||+.++ ....+ .++
T Consensus        60 ~~v~~~~~~~~~~~~~~~~~~---~~--~~---~~~~~~~s~dg~~l~~~~~~~-----~~i~~~d~~~~~~~~~~~~~~  126 (343)
T 1ri6_A           60 FRVLAYRIAPDDGALTFAAES---AL--PG---SLTHISTDHQGQFVFVGSYNA-----GNVSVTRLEDGLPVGVVDVVE  126 (343)
T ss_dssp             TEEEEEEECTTTCCEEEEEEE---EC--SS---CCSEEEECTTSSEEEEEETTT-----TEEEEEEEETTEEEEEEEEEC
T ss_pred             CeEEEEEecCCCCceeecccc---cc--CC---CCcEEEEcCCCCEEEEEecCC-----CeEEEEECCCCcccccccccc
Confidence            467787776  6777766443   21  11   111222  3566444443322     26888888322 22222 112


Q ss_pred             CCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEE--EecC-CCceeEEEEEEeCCCEEEEEe-
Q 044435          247 GFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLF--TMNE-NGYRVIPLAFSSRGDKVLFQK-  320 (378)
Q Consensus       247 ~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~--~i~~-~~~~~~~~~~~~~g~~v~~~~-  320 (378)
                      .....   .   .+... +|+ |++....++.+.+|.++..+   ......  .+.. ......-+.+.++|+.+++.. 
T Consensus       127 ~~~~~---~---~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          127 GLDGC---H---SANISPDNRTLWVPALKQDRICLFTVSDDG---HLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             CCTTB---C---CCEECTTSSEEEEEEGGGTEEEEEEECTTS---CEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET
T ss_pred             CCCCc---e---EEEECCCCCEEEEecCCCCEEEEEEecCCC---ceeeecccccccCCCCCcceEEECCCCCEEEEEeC
Confidence            11110   0   23333 554 55554455689999887522   344433  3333 222244577788898666665 


Q ss_pred             CCCeEEEEECC--CCeEEE
Q 044435          321 NSKDHCWYHLD--MHRVES  337 (378)
Q Consensus       321 ~~~~~~~ydl~--~~~~~~  337 (378)
                      .+..+..||++  +++++.
T Consensus       198 ~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          198 LNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             TTTEEEEEESSCTTSCCEE
T ss_pred             CCCEEEEEEecCCCCcEEE
Confidence            45679999984  455443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=92.61  E-value=5.3  Score=35.55  Aligned_cols=182  Identities=10%  Similarity=-0.007  Sum_probs=95.1

Q ss_pred             EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecC
Q 044435          110 LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIK  189 (378)
Q Consensus       110 l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~  189 (378)
                      ++....+..+.+||..+++....-...      ......+.+.+....-.++....      ...+.+++.+++.....-
T Consensus       169 l~t~s~D~~v~lwd~~~~~~~~~~~~h------~~~v~~~~~~~~~~g~~l~sgs~------Dg~v~~wd~~~~~~~~~~  236 (354)
T 2pbi_B          169 ILTASGDGTCALWDVESGQLLQSFHGH------GADVLCLDLAPSETGNTFVSGGC------DKKAMVWDMRSGQCVQAF  236 (354)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECCCSSCCEEEEEET------TSCEEEEETTTCCEEEEE
T ss_pred             EEEEeCCCcEEEEeCCCCeEEEEEcCC------CCCeEEEEEEeCCCCCEEEEEeC------CCeEEEEECCCCcEEEEe
Confidence            444446677899999888754321111      11223444444432223333221      346788888776532211


Q ss_pred             cccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CC
Q 044435          190 NIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KG  265 (378)
Q Consensus       190 ~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G  265 (378)
                      ..       .  ...-.++.+  +|.....+..+.      .|..+|+.+..-..+ ......     .....+... +|
T Consensus       237 ~~-------h--~~~v~~v~~~p~~~~l~s~s~D~------~v~lwd~~~~~~~~~~~~~~~~-----~~~~~~~~s~~g  296 (354)
T 2pbi_B          237 ET-------H--ESDVNSVRYYPSGDAFASGSDDA------TCRLYDLRADREVAIYSKESII-----FGASSVDFSLSG  296 (354)
T ss_dssp             CC-------C--SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCC-----SCEEEEEECTTS
T ss_pred             cC-------C--CCCeEEEEEeCCCCEEEEEeCCC------eEEEEECCCCcEEEEEcCCCcc-----cceeEEEEeCCC
Confidence            00       0  000112222  466555555442      688999987654332 221111     111022332 68


Q ss_pred             eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                      .+.++...++.+.||-+...      ..+..+........-+++.++|..++....++.+..|+
T Consensus       297 ~~l~~g~~d~~i~vwd~~~~------~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          297 RLLFAGYNDYTINVWDVLKG------SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTC------SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCcEEEEECCCC------ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            88777777789999987542      12333333112366678888998777777777676664

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=92.57  E-value=5  Score=35.10  Aligned_cols=193  Identities=10%  Similarity=0.003  Sum_probs=98.8

Q ss_pred             eEEEeecCCcEEEEcCcccc--eeecCCCCCCCCCCCCceeEEeeec---CCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          109 LLALKNYPKGIILLNPLTKK--HRVLPKFYRDLHGDKPSLHGFGYDV---GSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~--~~~LP~~~~~~~~~~~~~~~~g~d~---~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +|+....+..+.|||..+++  ...+.......   ......+.+.+   ..+.+-+++  .     ....+.+|+.+++
T Consensus       131 ~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~l~~~--~-----~d~~i~i~d~~~~  200 (357)
T 3i2n_A          131 EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGEN---KRDCWTVAFGNAYNQEERVVCAG--Y-----DNGDIKLFDLRNM  200 (357)
T ss_dssp             EEEEEETTSCEEEECTTSCSSCSEEECCCTTSC---CCCEEEEEEECCCC-CCCEEEEE--E-----TTSEEEEEETTTT
T ss_pred             EEEEEeCCCeEEEEeCCCCCCcceeccccCCCC---CCceEEEEEEeccCCCCCEEEEE--c-----cCCeEEEEECccC
Confidence            34444566789999998875  22332222111   11233344322   122222222  2     1346888988876


Q ss_pred             cEEecCcccCCCccccccccCCcceee-----CCeEEEEeecCCCcccceEEEEEEcCCceeee-e---cCCCCCCCCCC
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV-----NGALHWLANQNQDEMINDLILAFDLNIETFYS-M---PMPGFGNEGGG  254 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~-----~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i---~lP~~~~~~~~  254 (378)
                      .=......   ..  ..     .++.+     +|.....+..++      .|..||+.+.+... +   .+..+..    
T Consensus       201 ~~~~~~~~---~~--~v-----~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~----  260 (357)
T 3i2n_A          201 ALRWETNI---KN--GV-----CSLEFDRKDISMNKLVATSLEG------KFHVFDMRTQHPTKGFASVSEKAHKS----  260 (357)
T ss_dssp             EEEEEEEC---SS--CE-----EEEEESCSSSSCCEEEEEESTT------EEEEEEEEEEETTTEEEEEEEECCSS----
T ss_pred             ceeeecCC---CC--ce-----EEEEcCCCCCCCCEEEEECCCC------eEEEEeCcCCCcccceeeeccCCCcC----
Confidence            43222111   10  10     12222     456666655443      78888887643211 1   1111111    


Q ss_pred             cccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCC-------------cceEEEEEecC-CCceeEEEEEEeCCCEEEE
Q 044435          255 GELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVK-------------DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLF  318 (378)
Q Consensus       255 ~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~-------------~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~  318 (378)
                       .+..+... +|. +.+....++.+.+|.+......             .++..+..+.. .. ...-+++.++|..+++
T Consensus       261 -~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          261 -TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQ-PISSLDWSPDKRGLCV  338 (357)
T ss_dssp             -CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSS-CEEEEEECSSSTTEEE
T ss_pred             -CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCC-CeeEEEEcCCCCeEEE
Confidence             11133444 466 6666666679999998753211             23556666655 22 2556778888886664


Q ss_pred             -EeCCCeEEEEECCCC
Q 044435          319 -QKNSKDHCWYHLDMH  333 (378)
Q Consensus       319 -~~~~~~~~~ydl~~~  333 (378)
                       ...++.+..||+++.
T Consensus       339 s~~~d~~i~iw~~~~~  354 (357)
T 3i2n_A          339 CSSFDQTVRVLIVTKL  354 (357)
T ss_dssp             EEETTSEEEEEEECC-
T ss_pred             EecCCCcEEEEECCCc
Confidence             666778999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=92.48  E-value=5.1  Score=34.97  Aligned_cols=72  Identities=10%  Similarity=0.118  Sum_probs=45.3

Q ss_pred             eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECC-CCeEEEEe
Q 044435          266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD-MHRVESFL  339 (378)
Q Consensus       266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~-~~~~~~v~  339 (378)
                      .+.+....++.+.||.++.... ..|.....-... ....-+++.++|..++....++.+..|+.. .+.|+.+.
T Consensus       229 ~~las~s~D~~v~iw~~~~~~~-~~~~~~~~~~~~-~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~  301 (316)
T 3bg1_A          229 STIASCSQDGRVFIWTCDDASS-NTWSPKLLHKFN-DVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCIS  301 (316)
T ss_dssp             CEEEEEETTCEEEEEECSSTTC-CCCBCCEEEECS-SCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEE
T ss_pred             ceEEEEcCCCeEEEEEccCccc-cchhhhhhhcCC-CcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEee
Confidence            5666666677999999876321 224321111111 125567788889877777777778888875 55788774

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=92.38  E-value=2.6  Score=38.09  Aligned_cols=202  Identities=9%  Similarity=0.039  Sum_probs=97.4

Q ss_pred             ceEE-EeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          108 GLLA-LKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       108 GLl~-l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      +-++ ....+..+.+||..+++....-..+............+.+.+....+-+.+ ..   +.....+.+|+.+++.- 
T Consensus       178 ~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~-~~---d~~~~~i~~~d~~~~~~-  252 (416)
T 2pm9_A          178 AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATA-TG---SDNDPSILIWDLRNANT-  252 (416)
T ss_dssp             TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEE-EC---CSSSCCCCEEETTSTTS-
T ss_pred             CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEE-EC---CCCCceEEEEeCCCCCC-
Confidence            4443 334567799999988775443222211110012344666766544443333 21   11112677888776420 


Q ss_pred             ecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEE
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~  262 (378)
                      .....   ..   .....-.++.+   +|.+...+..+.      .|..+|+.+.+.. .+......-      . .+..
T Consensus       253 ~~~~~---~~---~~~~~v~~~~~s~~~~~~l~s~~~dg------~v~~wd~~~~~~~~~~~~~~~~v------~-~~~~  313 (416)
T 2pm9_A          253 PLQTL---NQ---GHQKGILSLDWCHQDEHLLLSSGRDN------TVLLWNPESAEQLSQFPARGNWC------F-KTKF  313 (416)
T ss_dssp             CSBCC---CS---CCSSCEEEEEECSSCSSCEEEEESSS------EEEEECSSSCCEEEEEECSSSCC------C-CEEE
T ss_pred             CcEEe---ec---CccCceeEEEeCCCCCCeEEEEeCCC------CEEEeeCCCCccceeecCCCCce------E-EEEE
Confidence            00001   00   00001112333   566666665543      7999998876442 222211110      1 3333


Q ss_pred             E-CC-eEEEEEcCCCcEEEEEeccCCCCcc---------------eEEEE-------------EecC-CCceeEEEEEEe
Q 044435          263 L-KG-CLSLLCKYSEPWDLWVMKEYGVKDS---------------WSKLF-------------TMNE-NGYRVIPLAFSS  311 (378)
Q Consensus       263 ~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~---------------W~~~~-------------~i~~-~~~~~~~~~~~~  311 (378)
                      . +| .+.+....++.+.||.+........               |....             ..+. ......-+++.+
T Consensus       314 s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  393 (416)
T 2pm9_A          314 APEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAF  393 (416)
T ss_dssp             CTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEET
T ss_pred             CCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEee
Confidence            3 45 6666666667999999876432110               11000             0000 000122456778


Q ss_pred             CCCEEEEEeCCCeEEEEECCCC
Q 044435          312 RGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       312 ~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      +|.++.....++.+..+|+.++
T Consensus       394 dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          394 GGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             TTEEECBCTTSSCBCCBCCCCC
T ss_pred             CCeEEEEeCCCCeEEEEEeccC
Confidence            8886666666667888888775

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=92.37  E-value=5.3  Score=34.99  Aligned_cols=70  Identities=7%  Similarity=0.044  Sum_probs=47.6

Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      +|.+.++...++.+.+|.+...     ......+........-+.+.++|..++....++.+..||+++.+....
T Consensus       186 ~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~  255 (369)
T 3zwl_B          186 KGKYIIAGHKDGKISKYDVSNN-----YEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKK  255 (369)
T ss_dssp             GGCEEEEEETTSEEEEEETTTT-----TEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEcCCCEEEEEECCCC-----cEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeee
Confidence            5666666666678999987652     233444443111255677778899788787788899999998775544

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=92.22  E-value=4.6  Score=33.95  Aligned_cols=204  Identities=13%  Similarity=0.019  Sum_probs=103.7

Q ss_pred             EeeeccceEEEeecCCcEEEEcCcc-cceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          102 IIGSCNGLLALKNYPKGIILLNPLT-KKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       102 ~~~s~~GLl~l~~~~~~~~V~NP~t-~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      +.-+-+|-.++......++++|..+ ++...+......     .....+.+.+.. .+ ++....  .......+.+++.
T Consensus        47 ~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~spdg-~~-l~~~~~--~~~~~~~l~~~~~  117 (297)
T 2ojh_A           47 PNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFAT-----ICNNDHGISPDG-AL-YAISDK--VEFGKSAIYLLPS  117 (297)
T ss_dssp             EEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCC-----CBCSCCEECTTS-SE-EEEEEC--TTTSSCEEEEEET
T ss_pred             eEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccc-----ccccceEECCCC-CE-EEEEEe--CCCCcceEEEEEC
Confidence            3344456554444566899999999 887766543311     111234454433 22 222221  1123456777777


Q ss_pred             CCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435          181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG  259 (378)
Q Consensus       181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~  259 (378)
                      .++.-+.+...   ..   .   ......-+|. +++....+.    ...|..+|..+.....+.....      ... .
T Consensus       118 ~~~~~~~~~~~---~~---~---~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~------~~~-~  177 (297)
T 2ojh_A          118 TGGTPRLMTKN---LP---S---YWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTHGEG------RND-G  177 (297)
T ss_dssp             TCCCCEECCSS---SS---E---EEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCCSSS------CEE-E
T ss_pred             CCCceEEeecC---CC---c---cceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEcccCCC------ccc-c
Confidence            66654444322   10   0   0001112454 444443332    1356677777666554422111      011 2


Q ss_pred             EEEE-CCeEEE-EEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC-----------CeEE
Q 044435          260 VYVL-KGCLSL-LCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS-----------KDHC  326 (378)
Q Consensus       260 l~~~-~G~L~~-~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~-----------~~~~  326 (378)
                      +... +|+..+ ....+..+.||.++..+.  .   ...+.........+.+.++|+.+++...+           ..++
T Consensus       178 ~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~--~---~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~  252 (297)
T 2ojh_A          178 PDYSPDGRWIYFNSSRTGQMQIWRVRVDGS--S---VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQ  252 (297)
T ss_dssp             EEECTTSSEEEEEECTTSSCEEEEEETTSS--C---EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEE
T ss_pred             ceECCCCCEEEEEecCCCCccEEEECCCCC--C---cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEE
Confidence            3332 566444 443456889999874321  1   12222211224456777889877766543           3599


Q ss_pred             EEECCCCeEEEEe
Q 044435          327 WYHLDMHRVESFL  339 (378)
Q Consensus       327 ~ydl~~~~~~~v~  339 (378)
                      .+|+++++.+.+.
T Consensus       253 ~~d~~~~~~~~~~  265 (297)
T 2ojh_A          253 LMDMDGGNVETLF  265 (297)
T ss_dssp             EEETTSCSCEEEE
T ss_pred             EEecCCCCceeee
Confidence            9999999877764

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=92.10  E-value=5.4  Score=34.49  Aligned_cols=193  Identities=9%  Similarity=-0.030  Sum_probs=99.0

Q ss_pred             ccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|- |+....+..+.|||..+++...--...      .-....+.+.|.. .+ ++...      ....+.+++.+++ 
T Consensus        65 ~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~sgs------~D~~v~lWd~~~~-  129 (304)
T 2ynn_A           65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAH------PDYIRSIAVHPTK-PY-VLSGS------DDLTVKLWNWENN-  129 (304)
T ss_dssp             GGGTEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEEGGGT-
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcEEEEEeCC------CCcEEEEEEcCCC-CE-EEEEC------CCCeEEEEECCCC-
Confidence            3444 444456778899999988754321111      1123456666543 22 22222      1345777776543 


Q ss_pred             EEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceE
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGV  260 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l  260 (378)
                      +......   ..  .  ...-.++.+   ++.+...+..+.      .|..+|+.+..-... .....      .....+
T Consensus       130 ~~~~~~~---~~--h--~~~v~~v~~~p~~~~~l~sgs~D~------~v~iwd~~~~~~~~~~~~~~~------~~v~~~  190 (304)
T 2ynn_A          130 WALEQTF---EG--H--EHFVMCVAFNPKDPSTFASGCLDR------TVKVWSLGQSTPNFTLTTGQE------RGVNYV  190 (304)
T ss_dssp             TEEEEEE---CC--C--CSCEEEEEECTTCTTEEEEEETTS------EEEEEETTCSSCSEEEECCCT------TCEEEE
T ss_pred             cchhhhh---cc--c--CCcEEEEEECCCCCCEEEEEeCCC------eEEEEECCCCCccceeccCCc------CcEEEE
Confidence            1111101   00  0  000112333   344444444442      788999865432211 11110      011012


Q ss_pred             EEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          261 YVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       261 ~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      ...   ++.+.+....++.+.||-+..      -..+..+.........+.+++++..++-...++.+..+|.++.+..+
T Consensus       191 ~~~~~~~~~~l~s~s~D~~i~iWd~~~------~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~  264 (304)
T 2ynn_A          191 DYYPLPDKPYMITASDDLTIKIWDYQT------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEK  264 (304)
T ss_dssp             EECCSTTCCEEEEEETTSEEEEEETTT------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEE
T ss_pred             EEEEcCCCCEEEEEcCCCeEEEEeCCC------CccceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceee
Confidence            221   456666666677999998764      22344444311125567788888877777777889999999987654


Q ss_pred             E
Q 044435          338 F  338 (378)
Q Consensus       338 v  338 (378)
                      .
T Consensus       265 ~  265 (304)
T 2ynn_A          265 T  265 (304)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=92.00  E-value=7.2  Score=35.68  Aligned_cols=183  Identities=8%  Similarity=0.028  Sum_probs=98.5

Q ss_pred             cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      +.+++....+..+.|||..+++...--...      ......+.+++   .+ ++...      ....+.+|+..++.-.
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~---~~-l~s~s------~dg~i~vwd~~~~~~~  246 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNTGEMLNTLIHH------CEAVLHLRFNN---GM-MVTCS------KDRSIAVWDMASPTDI  246 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEEEECCC------CSCEEEEECCT---TE-EEEEE------TTSCEEEEECSSSSCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEEEEcCC------CCcEEEEEEcC---CE-EEEee------CCCcEEEEeCCCCCCc
Confidence            344444456778999999988754322111      12233455542   32 32222      1345778887764311


Q ss_pred             ec-CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECC
Q 044435          187 RI-KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKG  265 (378)
Q Consensus       187 ~~-~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G  265 (378)
                      .. ...   .    .....-.++.++|.....+..++      .|..+|+.+.+.... +..+..     .+ .....+|
T Consensus       247 ~~~~~~---~----~~~~~v~~~~~~~~~l~s~~~dg------~i~vwd~~~~~~~~~-~~~~~~-----~v-~~~~~~~  306 (435)
T 1p22_A          247 TLRRVL---V----GHRAAVNVVDFDDKYIVSASGDR------TIKVWNTSTCEFVRT-LNGHKR-----GI-ACLQYRD  306 (435)
T ss_dssp             EEEEEE---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTTCCEEEE-EECCSS-----CE-EEEEEET
T ss_pred             eeeeEe---c----CCCCcEEEEEeCCCEEEEEeCCC------eEEEEECCcCcEEEE-EcCCCC-----cE-EEEEeCC
Confidence            10 000   0    00111124555777766666553      799999987654322 111111     11 2223367


Q ss_pred             eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      .+.++...++.+.+|.+...      ..+..+.. ..   .+.++.-+|..++....++.+..||+++.+
T Consensus       307 ~~l~~g~~dg~i~iwd~~~~------~~~~~~~~h~~---~v~~~~~~~~~l~sg~~dg~i~vwd~~~~~  367 (435)
T 1p22_A          307 RLVVSGSSDNTIRLWDIECG------ACLRVLEGHEE---LVRCIRFDNKRIVSGAYDGKIKVWDLVAAL  367 (435)
T ss_dssp             TEEEEEETTSCEEEEETTTC------CEEEEECCCSS---CEEEEECCSSEEEEEETTSCEEEEEHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCC------CEEEEEeCCcC---cEEEEEecCCEEEEEeCCCcEEEEECCCCC
Confidence            77777777789999988752      23344443 22   122333378877777778889999986653

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=91.91  E-value=5.7  Score=34.34  Aligned_cols=93  Identities=10%  Similarity=0.036  Sum_probs=54.3

Q ss_pred             EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEE
Q 044435          229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIP  306 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~  306 (378)
                      .|..+|+.+.+...+.++.....    -. .+... +|+..++.  +..+.+|-++.      ...+..+.. ..  ..-
T Consensus       220 ~v~~~d~~~~~~~~~~~~~~~~~----~~-~~~~s~dg~~l~~~--~~~v~~~d~~~------~~~~~~~~~~~~--~~~  284 (337)
T 1pby_B          220 GLLTMDLETGEMAMREVRIMDVF----YF-STAVNPAKTRAFGA--YNVLESFDLEK------NASIKRVPLPHS--YYS  284 (337)
T ss_dssp             EEEEEETTTCCEEEEEEEECSSC----EE-EEEECTTSSEEEEE--ESEEEEEETTT------TEEEEEEECSSC--CCE
T ss_pred             ceEEEeCCCCCceEeecCCCCCc----ee-eEEECCCCCEEEEe--CCeEEEEECCC------CcCcceecCCCc--eee
Confidence            58899998887664444322211    01 23332 45443333  35777776543      233344444 22  335


Q ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      +++.++|+.+++...+..+..||+++++..
T Consensus       285 ~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          285 VNVSTDGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEECTTSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             EEECCCCCEEEEEcCCCcEEEEECcCCcEE
Confidence            677788987777766677999999987643

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=91.88  E-value=7.4  Score=35.59  Aligned_cols=186  Identities=11%  Similarity=0.067  Sum_probs=98.8

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..+.++|..++..+.|.....       ....+.+.|...  +++....   ......+.+++..++..+.+...   +.
T Consensus       159 ~~i~i~d~~g~~~~~l~~~~~-------~v~~~~~Spdg~--~la~~s~---~~~~~~i~~~d~~tg~~~~l~~~---~~  223 (415)
T 2hqs_A          159 YELRVSDYDGYNQFVVHRSPQ-------PLMSPAWSPDGS--KLAYVTF---ESGRSALVIQTLANGAVRQVASF---PR  223 (415)
T ss_dssp             EEEEEEETTSCSCEEEEEESS-------CEEEEEECTTSS--EEEEEEC---TTSSCEEEEEETTTCCEEEEECC---SS
T ss_pred             ceEEEEcCCCCCCEEEeCCCC-------cceeeEEcCCCC--EEEEEEe---cCCCcEEEEEECCCCcEEEeecC---CC
Confidence            578999988766555543221       233555655433  2333222   12246789999988876655332   11


Q ss_pred             cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcC
Q 044435          197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY  273 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~  273 (378)
                        ..   ......-+|. |++....+..    ..|..+|+.+.+...+.-.  ..    ... .+.-. +|+ |++....
T Consensus       224 --~~---~~~~~spdg~~la~~~~~~g~----~~i~~~d~~~~~~~~l~~~--~~----~~~-~~~~spdg~~l~~~s~~  287 (415)
T 2hqs_A          224 --HN---GAPAFSPDGSKLAFALSKTGS----LNLYVMDLASGQIRQVTDG--RS----NNT-EPTWFPDSQNLAFTSDQ  287 (415)
T ss_dssp             --CE---EEEEECTTSSEEEEEECTTSS----CEEEEEETTTCCEEECCCC--SS----CEE-EEEECTTSSEEEEEECT
T ss_pred             --cc---cCEEEcCCCCEEEEEEecCCC----ceEEEEECCCCCEEeCcCC--CC----ccc-ceEECCCCCEEEEEECC
Confidence              10   0001112565 5545443221    3699999988776544211  11    111 23333 675 4444443


Q ss_pred             CCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC---CeEEEEECCCCeEEEE
Q 044435          274 SEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS---KDHCWYHLDMHRVESF  338 (378)
Q Consensus       274 ~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~---~~~~~ydl~~~~~~~v  338 (378)
                      ++...||.++-.+..     ...+........-+.+.++|+.|++...+   ..++.+|+++++.+.+
T Consensus       288 ~g~~~i~~~d~~~~~-----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l  350 (415)
T 2hqs_A          288 AGRPQVYKVNINGGA-----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL  350 (415)
T ss_dssp             TSSCEEEEEETTSSC-----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEEC
T ss_pred             CCCcEEEEEECCCCC-----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEe
Confidence            456667776643211     11222211124456777899977776543   3699999999988766

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=91.64  E-value=5.8  Score=33.86  Aligned_cols=189  Identities=11%  Similarity=-0.029  Sum_probs=96.7

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-  183 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-  183 (378)
                      +.+++++....+..+.|||..+++....-...      ......+.+.+.. .+-+++ ..      ...+.+++..+. 
T Consensus        27 ~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~l~~~-~~------dg~i~~~~~~~~~   92 (313)
T 3odt_A           27 VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTG------QGFLNSVCYDSEK-ELLLFG-GK------DTMINGVPLFATS   92 (313)
T ss_dssp             EETTEEEEEETTSEEEEEEESSSEEEEEEEEC------SSCEEEEEEETTT-TEEEEE-ET------TSCEEEEETTCCT
T ss_pred             cCCCEEEEEEcCCcEEEEECCCCEEEEEeecC------CccEEEEEECCCC-CEEEEe-cC------CCeEEEEEeeecC
Confidence            34445555556677889998777654433222      1123356666633 333322 11      234556655432 


Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-  262 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-  262 (378)
                      ..+.....   .    .....-..+.++|.....+..+.      .|..+|.... ...+......      .. .+.. 
T Consensus        93 ~~~~~~~~---~----~~~~~i~~~~~~~~~l~~~~~d~------~i~~~d~~~~-~~~~~~~~~~------v~-~~~~~  151 (313)
T 3odt_A           93 GEDPLYTL---I----GHQGNVCSLSFQDGVVISGSWDK------TAKVWKEGSL-VYNLQAHNAS------VW-DAKVV  151 (313)
T ss_dssp             TSCC-CEE---C----CCSSCEEEEEEETTEEEEEETTS------EEEEEETTEE-EEEEECCSSC------EE-EEEEE
T ss_pred             CCCcccch---h----hcccCEEEEEecCCEEEEEeCCC------CEEEEcCCcE-EEecccCCCc------ee-EEEEc
Confidence            11111111   0    00111124555777666665553      7888983322 2222221110      11 2222 


Q ss_pred             E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      . ++.+.++...++.+.+|....        ....+.. .......+.+.+++. ++....++.+..||+++++...
T Consensus       152 ~~~~~~l~~~~~d~~i~i~d~~~--------~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~  219 (313)
T 3odt_A          152 SFSENKFLTASADKTIKLWQNDK--------VIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLR  219 (313)
T ss_dssp             ETTTTEEEEEETTSCEEEEETTE--------EEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEE
T ss_pred             cCCCCEEEEEECCCCEEEEecCc--------eEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhh
Confidence            2 677777777777999996221        2222332 222355677777887 7777777889999998776443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=91.64  E-value=7.4  Score=35.07  Aligned_cols=191  Identities=10%  Similarity=0.003  Sum_probs=93.5

Q ss_pred             cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCC
Q 044435          115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNF  194 (378)
Q Consensus       115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~  194 (378)
                      .+..+.|||.....-  ++........+......+.+.+..+.+-+.+-       ....+.+|+..++........   
T Consensus        55 ~~g~i~v~~~~~~~~--~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s-------~dg~v~vw~~~~~~~~~~~~~---  122 (402)
T 2aq5_A           55 GGGAFLVLPLGKTGR--VDKNVPLVCGHTAPVLDIAWCPHNDNVIASGS-------EDCTVMVWEIPDGGLVLPLRE---  122 (402)
T ss_dssp             SSCCEEEEETTCCEE--CCTTCCCBCCCSSCEEEEEECTTCTTEEEEEE-------TTSEEEEEECCTTCCSSCBCS---
T ss_pred             CCCEEEEEECccCCC--CCCCCceEecCCCCEEEEEeCCCCCCEEEEEe-------CCCeEEEEEccCCCCccccCC---
Confidence            455678887644321  11111111111234556777774455444331       134688888877643211000   


Q ss_pred             Ccc-ccccccCCcceee--CC-eEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEE
Q 044435          195 PYS-WADHSYGGNGAFV--NG-ALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLS  268 (378)
Q Consensus       195 p~~-~~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~  268 (378)
                      +.. .......-.++.+  +| .+...+..+.      .|..+|+.+.+.... ....+..     .+..+... +|.+.
T Consensus       123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg------~i~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDN------VILVWDVGTGAAVLTLGPDVHPD-----TIYSVDWSRDGALI  191 (402)
T ss_dssp             CSEEEECCSSCEEEEEECSSBTTEEEEEETTS------CEEEEETTTTEEEEEECTTTCCS-----CEEEEEECTTSSCE
T ss_pred             ceEEecCCCCeEEEEEECcCCCCEEEEEcCCC------EEEEEECCCCCccEEEecCCCCC-----ceEEEEECCCCCEE
Confidence            000 0000000112222  34 3454444442      699999988765432 2122211     11023333 67777


Q ss_pred             EEEcCCCcEEEEEeccCCCCcceEEEEEe-cC-CCceeEEEEEEeCCCEEEEE---eCCCeEEEEECCCCe
Q 044435          269 LLCKYSEPWDLWVMKEYGVKDSWSKLFTM-NE-NGYRVIPLAFSSRGDKVLFQ---KNSKDHCWYHLDMHR  334 (378)
Q Consensus       269 ~~~~~~~~l~iW~l~~~~~~~~W~~~~~i-~~-~~~~~~~~~~~~~g~~v~~~---~~~~~~~~ydl~~~~  334 (378)
                      ++...++.+.||.+..      -..+..+ .. ......-+.+.++|.+++..   ..++.+..||+++.+
T Consensus       192 ~~~~~d~~i~iwd~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          192 CTSCRDKRVRVIEPRK------GTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEETTSEEEEEETTT------TEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCS
T ss_pred             EEEecCCcEEEEeCCC------CceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCcccc
Confidence            7777777999998765      1233444 22 22123445666777755555   356679999998754

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=91.57  E-value=7.2  Score=34.79  Aligned_cols=115  Identities=13%  Similarity=0.197  Sum_probs=62.8

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCC------CCcccceEEEE-CCeEEEEEcCCCcEEEEEe
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEG------GGGELSGVYVL-KGCLSLLCKYSEPWDLWVM  282 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~------~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l  282 (378)
                      +|.+...+..+..   ...|..||+.+.+. ..+..|......      ....+..+... +|.+.++...++.+.||.+
T Consensus       244 ~~~~l~~~~~d~~---~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  320 (397)
T 1sq9_A          244 QGSLLAIAHDSNS---FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  320 (397)
T ss_dssp             STTEEEEEEEETT---EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEecCCC---CceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEc
Confidence            4665555554310   02799999876543 333332100000      00111133333 5777777777779999988


Q ss_pred             ccCCCCcceEEEEEecC------C---------------CceeEEEEEEeCC----------CEEEEEeCCCeEEEEECC
Q 044435          283 KEYGVKDSWSKLFTMNE------N---------------GYRVIPLAFSSRG----------DKVLFQKNSKDHCWYHLD  331 (378)
Q Consensus       283 ~~~~~~~~W~~~~~i~~------~---------------~~~~~~~~~~~~g----------~~v~~~~~~~~~~~ydl~  331 (378)
                      ..      ...+..+..      .               .....-+.+.++|          ..++....++.+..||++
T Consensus       321 ~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          321 KT------KERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             TT------TEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             CC------CceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            65      233333331      1               2235567777887          667777778889999988


Q ss_pred             CCe
Q 044435          332 MHR  334 (378)
Q Consensus       332 ~~~  334 (378)
                      +++
T Consensus       395 ~g~  397 (397)
T 1sq9_A          395 GGK  397 (397)
T ss_dssp             C--
T ss_pred             CCC
Confidence            764

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=91.54  E-value=7.6  Score=35.03  Aligned_cols=202  Identities=12%  Similarity=0.074  Sum_probs=102.5

Q ss_pred             eccceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|-+++ ...+..+.|||..+++....-...      ......+.+.+... + ++...      ....+.+++.+++
T Consensus       132 s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h------~~~v~~~~~~p~~~-~-l~s~s------~d~~v~iwd~~~~  197 (393)
T 1erj_A          132 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGH------EQDIYSLDYFPSGD-K-LVSGS------GDRTVRIWDLRTG  197 (393)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTSS-E-EEEEE------TTSEEEEEETTTT
T ss_pred             CCCCCEEEEEcCCCeEEEEECCCCcEEEEEccC------CCCEEEEEEcCCCC-E-EEEec------CCCcEEEEECCCC
Confidence            34555444 346778999999988765432211      22344566665432 2 22222      1356888888776


Q ss_pred             cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccce
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSG  259 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~  259 (378)
                      .-...-..   ..  .     ...+.+   +|.+...+..+.      .|..+|+.++.... +..+..........+..
T Consensus       198 ~~~~~~~~---~~--~-----v~~~~~~~~~~~~l~~~s~d~------~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~  261 (393)
T 1erj_A          198 QCSLTLSI---ED--G-----VTTVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYS  261 (393)
T ss_dssp             EEEEEEEC---SS--C-----EEEEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEE
T ss_pred             eeEEEEEc---CC--C-----cEEEEEECCCCCEEEEEcCCC------cEEEEECCCCcEEEeecccccCCCCCCCCEEE
Confidence            54322111   00  0     011111   566655555443      68899988765432 22221110000111213


Q ss_pred             EEEE-CCeEEEEEcCCCcEEEEEeccCCCCc------ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435          260 VYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD------SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM  332 (378)
Q Consensus       260 l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~------~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~  332 (378)
                      +... +|++.+....++.+.+|.+.......      .......+........-+++.++|..++-...++.+..||+++
T Consensus       262 v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~  341 (393)
T 1erj_A          262 VVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS  341 (393)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTT
T ss_pred             EEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            3333 67777777777799999987532110      0111111211111244567777888777777788899999998


Q ss_pred             CeEE
Q 044435          333 HRVE  336 (378)
Q Consensus       333 ~~~~  336 (378)
                      ++..
T Consensus       342 ~~~~  345 (393)
T 1erj_A          342 GNPL  345 (393)
T ss_dssp             CCEE
T ss_pred             CeEE
Confidence            8754

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=91.49  E-value=7.2  Score=35.03  Aligned_cols=198  Identities=11%  Similarity=-0.019  Sum_probs=97.2

Q ss_pred             eEEEeecCCcEEEEcCcccc------eeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          109 LLALKNYPKGIILLNPLTKK------HRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~------~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      +++....+..+.+||..+++      .......... +  ......+.+.+..+.+-+.+ .      ....+.+|+.++
T Consensus       128 ~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~--~~~v~~~~~~~~~~~~l~~~-~------~dg~v~iwd~~~  197 (416)
T 2pm9_A          128 VLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-S--VDEVISLAWNQSLAHVFASA-G------SSNFASIWDLKA  197 (416)
T ss_dssp             BEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-S--SCCCCEEEECSSCTTEEEEE-S------SSSCEEEEETTT
T ss_pred             EEEEEcCCCeEEEEECCCCccccccccccccccccC-C--CCCeeEEEeCCCCCcEEEEE-c------CCCCEEEEECCC
Confidence            34444456778999998876      2211110000 1  11233566666544433332 1      134588888887


Q ss_pred             CcEEecCcccCCCccccccccCCcceee--CC-eEEEEeecCCCcccceEEEEEEcCCceeeeecCC-CCCCCCCCcccc
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAFV--NG-ALHWLANQNQDEMINDLILAFDLNIETFYSMPMP-GFGNEGGGGELS  258 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP-~~~~~~~~~~~~  258 (378)
                      +.-...-..   +.........-.++.+  +| .+...+..+...   ..|..||+.+..-....+. .+.     ..+.
T Consensus       198 ~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~---~~i~~~d~~~~~~~~~~~~~~~~-----~~v~  266 (416)
T 2pm9_A          198 KKEVIHLSY---TSPNSGIKQQLSVVEWHPKNSTRVATATGSDND---PSILIWDLRNANTPLQTLNQGHQ-----KGIL  266 (416)
T ss_dssp             TEEEEEECC---CCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS---CCCCEEETTSTTSCSBCCCSCCS-----SCEE
T ss_pred             CCcceEEec---cccccccCCceEEEEECCCCCCEEEEEECCCCC---ceEEEEeCCCCCCCcEEeecCcc-----Ccee
Confidence            643322111   0000000000112222  23 344444333100   1588888876431111221 111     1111


Q ss_pred             eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC-CEEEEEeCCCeEEEEECCCCe
Q 044435          259 GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG-DKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       259 ~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g-~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      .+...  +|.+.+....++.+.+|.++.      ...+..+.. .. ...-+.+.++| ..++....++.+..||+++.+
T Consensus       267 ~~~~s~~~~~~l~s~~~dg~v~~wd~~~------~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          267 SLDWCHQDEHLLLSSGRDNTVLLWNPES------AEQLSQFPARGN-WCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEEECSSCSSCEEEEESSSEEEEECSSS------CCEEEEEECSSS-CCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEEeCCCCCCeEEEEeCCCCEEEeeCCC------CccceeecCCCC-ceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence            33433  677777777777999998765      223444443 21 13456777787 666666667779999998765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=91.44  E-value=7.5  Score=34.73  Aligned_cols=197  Identities=8%  Similarity=-0.053  Sum_probs=90.9

Q ss_pred             ccceEEEeecCCcEEEEcCcccceeecCCCCCCC---CC-CCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435          106 CNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDL---HG-DKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK  181 (378)
Q Consensus       106 ~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~---~~-~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~  181 (378)
                      .+|.|.+......++.+|+.|++.+.--..+...   .. ..........+.   . +|+...      ....+..|+..
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~v~v~~------~~g~l~a~d~~  121 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSG---G-HVYIGS------EKAQVYALNTS  121 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEET---T-EEEEEE------TTSEEEEEETT
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeC---C-EEEEEc------CCCEEEEEECC
Confidence            4677766655567888899988755322221110   00 011111222221   1 222221      12467888887


Q ss_pred             CC--cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCccc
Q 044435          182 VN--LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGEL  257 (378)
Q Consensus       182 ~~--~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~  257 (378)
                      ++  .|+.....       .   ....++..+|.+|.....+       .|.+||..+++  |+.- .+....... ...
T Consensus       122 tG~~~W~~~~~~-------~---~~~~p~~~~~~v~v~~~~g-------~l~~~d~~tG~~~W~~~-~~~~~~~~~-~~~  182 (376)
T 3q7m_A          122 DGTVAWQTKVAG-------E---ALSRPVVSDGLVLIHTSNG-------QLQALNEADGAVKWTVN-LDMPSLSLR-GES  182 (376)
T ss_dssp             TCCEEEEEECSS-------C---CCSCCEEETTEEEEECTTS-------EEEEEETTTCCEEEEEE-CCC-----C-CCC
T ss_pred             CCCEEEEEeCCC-------c---eEcCCEEECCEEEEEcCCC-------eEEEEECCCCcEEEEEe-CCCCceeec-CCC
Confidence            65  58764322       1   1233566788877755432       79999987655  5433 222111000 001


Q ss_pred             ceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-------CceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          258 SGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-------GYRVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       258 ~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-------~~~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                       .....+|.+++.. .++.+..+-.+.  .+..|......+. .       .....|+.   .++.|++...+..++++|
T Consensus       183 -~~~~~~~~v~~g~-~~g~l~~~d~~t--G~~~w~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          183 -APTTAFGAAVVGG-DNGRVSAVLMEQ--GQMIWQQRISQATGSTEIDRLSDVDTTPVV---VNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             -CCEEETTEEEECC-TTTEEEEEETTT--CCEEEEEECCC-----------CCCCCCEE---ETTEEEEECTTSCEEEEE
T ss_pred             -CcEEECCEEEEEc-CCCEEEEEECCC--CcEEEEEecccCCCCcccccccccCCCcEE---ECCEEEEEecCcEEEEEE
Confidence             2233355554422 122332222221  1234543321110 0       00112221   244477776667799999


Q ss_pred             CCCCeEEEE
Q 044435          330 LDMHRVESF  338 (378)
Q Consensus       330 l~~~~~~~v  338 (378)
                      +++++..+-
T Consensus       256 ~~tG~~~w~  264 (376)
T 3q7m_A          256 LRSGQIMWK  264 (376)
T ss_dssp             TTTCCEEEE
T ss_pred             CCCCcEEee
Confidence            998875543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=91.27  E-value=8.3  Score=34.95  Aligned_cols=186  Identities=11%  Similarity=-0.036  Sum_probs=93.9

Q ss_pred             eEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC-CCcceEEEEEEcCCCcEE
Q 044435          109 LLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS-PVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       109 Ll~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~-~~~~~~~~vyss~~~~W~  186 (378)
                      .+++.. ....+.++|+.+++....-+...       ...++.+++..+ +-+++...... ......+.+|+..++.-.
T Consensus       225 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~g~-~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~  296 (433)
T 3bws_A          225 LVYCSNWISEDISVIDRKTKLEIRKTDKIG-------LPRGLLLSKDGK-ELYIAQFSASNQESGGGRLGIYSMDKEKLI  296 (433)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECCCCS-------EEEEEEECTTSS-EEEEEEEESCTTCSCCEEEEEEETTTTEEE
T ss_pred             EEEEEecCCCcEEEEECCCCcEEEEecCCC-------CceEEEEcCCCC-EEEEEECCCCccccCCCeEEEEECCCCcEE
Confidence            343443 45678899998877654332211       233566665433 33333221010 012347889998876433


Q ss_pred             ecCcccCCCccccccccCCcceeeCC-eEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFVNG-ALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL-  263 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~~G-~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~-  263 (378)
                      ..-..   +.  ..   ..-...-+| .+|..+..+      ..|..||+.+.+... ++.....       . .++.. 
T Consensus       297 ~~~~~---~~--~~---~~~~~~~~g~~l~~~~~~~------~~v~v~d~~~~~~~~~~~~~~~~-------~-~~~~s~  354 (433)
T 3bws_A          297 DTIGP---PG--NK---RHIVSGNTENKIYVSDMCC------SKIEVYDLKEKKVQKSIPVFDKP-------N-TIALSP  354 (433)
T ss_dssp             EEEEE---EE--CE---EEEEECSSTTEEEEEETTT------TEEEEEETTTTEEEEEEECSSSE-------E-EEEECT
T ss_pred             eeccC---CC--Cc---ceEEECCCCCEEEEEecCC------CEEEEEECCCCcEEEEecCCCCC-------C-eEEEcC
Confidence            22111   00  00   000112246 455554443      379999998765432 3322111       1 33443 


Q ss_pred             CCe-EEEEEcCC--------------CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEE
Q 044435          264 KGC-LSLLCKYS--------------EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHC  326 (378)
Q Consensus       264 ~G~-L~~~~~~~--------------~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~  326 (378)
                      +|+ |++.....              +.+.+|.++.      ...+..+.. ..  ..-+++.++|..++.... ++.+.
T Consensus       355 dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~------~~~~~~~~~~~~--~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          355 DGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTT------DTVKEFWEAGNQ--PTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             TSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTT------TEEEEEEECSSS--EEEEEECTTSCEEEEEETTTTEEE
T ss_pred             CCCEEEEEecCCCccccccccccccceEEEEEECCC------CcEEEEecCCCC--CceEEEcCCCCEEEEEECCCCeEE
Confidence            464 55444332              2677776653      233444444 32  456777888987777664 67788


Q ss_pred             EEECCC
Q 044435          327 WYHLDM  332 (378)
Q Consensus       327 ~ydl~~  332 (378)
                      .|++++
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            888763

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=91.27  E-value=7.7  Score=34.56  Aligned_cols=197  Identities=11%  Similarity=-0.013  Sum_probs=93.9

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      +.+|.++.......+.|||..+++...........+  ......+.+.+.. .+-+.+ .      ....+.+++..++.
T Consensus       103 s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h--~~~V~~v~~spdg-~~l~sg-s------~dg~v~iwd~~~~~  172 (357)
T 4g56_B          103 VSEKGILVASDSGAVELWEILEKESLLVNKFAKYEH--DDIVKTLSVFSDG-TQAVSG-G------KDFSVKVWDLSQKA  172 (357)
T ss_dssp             ETTTEEEEEETTSCEEEC--------CCCCEEECCC--SSCEEEEEECSSS-SEEEEE-E------TTSCEEEEETTTTE
T ss_pred             cCCCCEEEEECCCEEEEeeccccceeEEEeeccCCC--CCCEEEEEECCCC-CEEEEE-e------CCCeEEEEECCCCc
Confidence            445666666666779999999887554433221111  1223455665532 332222 2      13457888887764


Q ss_pred             EEec-CcccCCCccccccccCCcceee--CCe-EEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccce
Q 044435          185 WRRI-KNIKNFPYSWADHSYGGNGAFV--NGA-LHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSG  259 (378)
Q Consensus       185 W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~  259 (378)
                      -... ...        .  ..-.++.+  +|. ++..+..+      ..|..+|+.+.+.... .......     .+..
T Consensus       173 ~~~~~~~h--------~--~~v~~v~~s~~~~~~~~s~~~d------g~v~~wd~~~~~~~~~~~~~~~~~-----~v~~  231 (357)
T 4g56_B          173 VLKSYNAH--------S--SEVNCVAACPGKDTIFLSCGED------GRILLWDTRKPKPATRIDFCASDT-----IPTS  231 (357)
T ss_dssp             EEEEECCC--------S--SCEEEEEECTTCSSCEEEEETT------SCEEECCTTSSSCBCBCCCTTCCS-----CEEE
T ss_pred             EEEEEcCC--------C--CCEEEEEEccCCCceeeeeccC------CceEEEECCCCceeeeeeeccccc-----cccc
Confidence            3221 110        0  00112222  332 33333333      2688899887553322 2221111     1102


Q ss_pred             EEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCCeEE
Q 044435          260 VYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       260 l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      +...  ++.+.++...++.+.+|-+....      ....+........-+++.++|. +|+-...++.+.+||+++++..
T Consensus       232 v~~sp~~~~~la~g~~d~~i~~wd~~~~~------~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          232 VTWHPEKDDTFACGDETGNVSLVNIKNPD------SAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             EEECTTSTTEEEEEESSSCEEEEESSCGG------GCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             hhhhhcccceEEEeecccceeEEECCCCc------EeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            3332  35676666666799999876521      1223333111245567777765 4445566777999999998765


Q ss_pred             EE
Q 044435          337 SF  338 (378)
Q Consensus       337 ~v  338 (378)
                      ..
T Consensus       306 ~~  307 (357)
T 4g56_B          306 RD  307 (357)
T ss_dssp             EE
T ss_pred             EE
Confidence            44

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=91.24  E-value=7.3  Score=34.22  Aligned_cols=200  Identities=10%  Similarity=0.029  Sum_probs=94.7

Q ss_pred             ccceEEEee-cCCcEEEEcCccc--ceeecCCCCCC--CCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          106 CNGLLALKN-YPKGIILLNPLTK--KHRVLPKFYRD--LHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~--~~~~LP~~~~~--~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      .+|-+.+.+ ....+.++|+..+  ....+......  .........++.+|+..+...|.--      .....+.+|+.
T Consensus       100 ~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~------~~~~~I~~~~~  173 (329)
T 3fvz_A          100 TDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDG------YCNSRIVQFSP  173 (329)
T ss_dssp             TTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEEC------SSCCEEEEECT
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeC------CCCCeEEEEcC
Confidence            466665554 4567888998665  33444321110  0111224557888875555444321      01346778875


Q ss_pred             CCCcEEecCcccC--CCccccccccCCcceee--C-CeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCC
Q 044435          181 KVNLWRRIKNIKN--FPYSWADHSYGGNGAFV--N-GALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGG  254 (378)
Q Consensus       181 ~~~~W~~~~~~~~--~p~~~~~~~~~~~~v~~--~-G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~  254 (378)
                      ....-+.+.....  .+.  ........++.+  + |.+|+.....      ..|..||+.++++ ..+..+......  
T Consensus       174 ~g~~~~~~~~~g~~~~~~--~~~~~~p~gia~d~~~g~l~v~d~~~------~~I~~~~~~~G~~~~~~~~~~~~~~~--  243 (329)
T 3fvz_A          174 SGKFVTQWGEESSGSSPR--PGQFSVPHSLALVPHLDQLCVADREN------GRIQCFKTDTKEFVREIKHASFGRNV--  243 (329)
T ss_dssp             TSCEEEEECEECCSSSCC--TTEESCEEEEEEETTTTEEEEEETTT------TEEEEEETTTCCEEEEECCTTTTTCE--
T ss_pred             CCCEEEEeccCCCCCCCC--CcccCCCcEEEEECCCCEEEEEECCC------CEEEEEECCCCcEEEEEeccccCCCc--
Confidence            4433233321100  000  001112235666  4 8888876554      3899999985555 444544332210  


Q ss_pred             cccceEEEECCeEEEEEc-------CCCcEEEEEeccCCCCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEe-CCC
Q 044435          255 GELSGVYVLKGCLSLLCK-------YSEPWDLWVMKEYGVKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQK-NSK  323 (378)
Q Consensus       255 ~~~~~l~~~~G~L~~~~~-------~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~-~~~  323 (378)
                      +   .++...|.++....       ...++.+|.+...    .  .+..+..   ......-+++.++|. +++.. .+.
T Consensus       244 ~---~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g----~--~~~~~~~~~~~~~~p~~ia~~~dG~-lyvad~~~~  313 (329)
T 3fvz_A          244 F---AISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSG----E--IIDVFKPVRKHFDMPHDIVASEDGT-VYIGDAHTN  313 (329)
T ss_dssp             E---EEEEETTEEEEEECCCCTTCSCCCCEEEEETTTC----C--EEEEECCSSSCCSSEEEEEECTTSE-EEEEESSSC
T ss_pred             c---eeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCC----e--EEEEEcCCCCccCCeeEEEECCCCC-EEEEECCCC
Confidence            1   22223344444332       2226677765541    1  2233331   222244566666775 44443 334


Q ss_pred             eEEEEECC
Q 044435          324 DHCWYHLD  331 (378)
Q Consensus       324 ~~~~ydl~  331 (378)
                      ++..|+++
T Consensus       314 ~I~~~~~~  321 (329)
T 3fvz_A          314 TVWKFTLT  321 (329)
T ss_dssp             CEEEEEEE
T ss_pred             EEEEEeCC
Confidence            56666654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=91.15  E-value=0.82  Score=40.99  Aligned_cols=139  Identities=6%  Similarity=-0.007  Sum_probs=73.7

Q ss_pred             eEEEEEEcCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCce-eeee-cCCCC
Q 044435          173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIET-FYSM-PMPGF  248 (378)
Q Consensus       173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i-~lP~~  248 (378)
                      ..+.+|+..++.|+.....   ..  ...  .-.++.+  +|.+...+..+.      .|..+|+.++. +... .+..+
T Consensus        33 ~~i~iw~~~~~~~~~~~~~---~~--h~~--~v~~~~~s~~~~~l~s~s~d~------~v~vwd~~~~~~~~~~~~~~~~   99 (377)
T 3dwl_C           33 NQVELYEQDGNGWKHARTF---SD--HDK--IVTCVDWAPKSNRIVTCSQDR------NAYVYEKRPDGTWKQTLVLLRL   99 (377)
T ss_dssp             SCBCEEEEETTEEEECCCB---CC--CSS--CEEEEEECTTTCCEEEEETTS------SEEEC------CCCCEEECCCC
T ss_pred             CEEEEEEccCCceEEEEEE---ec--CCc--eEEEEEEeCCCCEEEEEeCCC------eEEEEEcCCCCceeeeeEeccc
Confidence            4577888888877766544   21  110  0112222  455544444432      68899988776 4333 22222


Q ss_pred             CCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEE
Q 044435          249 GNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHC  326 (378)
Q Consensus       249 ~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~  326 (378)
                      ..     .+..+... +|++.+....++.+.+|.++..   ..|.....+.. ......-+.+.++|..++....++.+.
T Consensus       100 ~~-----~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~  171 (377)
T 3dwl_C          100 NR-----AATFVRWSPNEDKFAVGSGARVISVCYFEQE---NDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAY  171 (377)
T ss_dssp             SS-----CEEEEECCTTSSCCEEEESSSCEEECCC--------CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEE
T ss_pred             CC-----ceEEEEECCCCCEEEEEecCCeEEEEEECCc---ccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEE
Confidence            11     11022222 5777677766779999988763   34655555554 332366677888888777777777899


Q ss_pred             EEECCC
Q 044435          327 WYHLDM  332 (378)
Q Consensus       327 ~ydl~~  332 (378)
                      .||+++
T Consensus       172 iwd~~~  177 (377)
T 3dwl_C          172 VLSAYV  177 (377)
T ss_dssp             EEEECC
T ss_pred             EEEEEe
Confidence            999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=91.13  E-value=7.2  Score=33.96  Aligned_cols=64  Identities=11%  Similarity=0.085  Sum_probs=40.3

Q ss_pred             eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCC----CEEEEEeCCCeEEEEECCC
Q 044435          266 CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRG----DKVLFQKNSKDHCWYHLDM  332 (378)
Q Consensus       266 ~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g----~~v~~~~~~~~~~~ydl~~  332 (378)
                      ++.+....++.+.||.++.   ...|.....+........-+++.+++    ..++-...++.+..+|+++
T Consensus       180 ~~l~sgs~D~~v~lWd~~~---~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          180 KRFASGGCDNLIKLWKEEE---DGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CBEECCBTTSBCCEEEECT---TSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             ceEEEecCCCeEEEEEeCC---CCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence            4445555556999999864   23577666555411125556666665    5566666777788898875

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=91.13  E-value=7.3  Score=34.06  Aligned_cols=66  Identities=11%  Similarity=0.057  Sum_probs=44.6

Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-CceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM  332 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~  332 (378)
                      |++.++...++.+.+|.++...  ........+.. . .....-+++.++|..++....++.+..||+.+
T Consensus       299 ~~~l~~~~~dg~i~vwd~~~~~--~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~  366 (366)
T 3k26_A          299 QKMLALGNQVGKLYVWDLEVED--PHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR  366 (366)
T ss_dssp             SSEEEEECTTSCEEEEECCSSS--GGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             CcEEEEEecCCcEEEEECCCCC--CccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence            7777777777799999998632  11223334443 1 23466678888999888888888899999864

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=90.82  E-value=11  Score=35.75  Aligned_cols=69  Identities=9%  Similarity=0.002  Sum_probs=47.0

Q ss_pred             CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--ceeEEEEEEeC-CCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          264 KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG--YRVIPLAFSSR-GDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       264 ~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~--~~~~~~~~~~~-g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      +|. +.+....++.+.+|.+..      ......+.. ..  ....-+.+.++ |+.++....++.+..||+++++....
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  244 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPP------FKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKY  244 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTT------BEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEE
T ss_pred             CCCcEEEEEeCCCcEEEEeCCC------cceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEE
Confidence            454 666666667999997653      445555554 22  02566778888 88777777778899999988775443

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=90.66  E-value=7.7  Score=33.47  Aligned_cols=199  Identities=8%  Similarity=0.012  Sum_probs=101.2

Q ss_pred             eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      ..+|.|.+.+ ....++.+||.+++...+....        ...++.+++..+ + +++  .      ...+.+|+..++
T Consensus        22 ~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~--------~~~~i~~~~dG~-l-~v~--~------~~~l~~~d~~~g   83 (297)
T 3g4e_A           22 EVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDA--------PVSSVALRQSGG-Y-VAT--I------GTKFCALNWKEQ   83 (297)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTTCCEEEEECSS--------CEEEEEEBTTSS-E-EEE--E------TTEEEEEETTTT
T ss_pred             CCCCEEEEEECCCCEEEEEECCCCcEEEEeCCC--------ceEEEEECCCCC-E-EEE--E------CCeEEEEECCCC
Confidence            3355555554 5667899999998765543221        123566776544 2 222  1      236888999888


Q ss_pred             cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCc-----ccceEEEEEEcCCceeeee---cCCCCCCCCC
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDE-----MINDLILAFDLNIETFYSM---PMPGFGNEGG  253 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~-----~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~  253 (378)
                      .++.+...   +.  .........+.+  +|.+|+-.......     .....|..+|.....-...   ..|.      
T Consensus        84 ~~~~~~~~---~~--~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn------  152 (297)
T 3g4e_A           84 SAVVLATV---DN--DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN------  152 (297)
T ss_dssp             EEEEEEEC---CT--TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE------
T ss_pred             cEEEEEec---CC--CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc------
Confidence            88776433   11  111111122333  68866544221100     1124788888764322211   1111      


Q ss_pred             CcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEE---EEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEE
Q 044435          254 GGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKL---FTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCW  327 (378)
Q Consensus       254 ~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~---~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~  327 (378)
                           .++.. +| .|+++.....++.+|.++...  ......   ..+........-+++.++|. +++.. ....+..
T Consensus       153 -----gi~~spdg~~lyv~~~~~~~i~~~~~d~~~--G~~~~~~~~~~~~~~~~~p~g~~~d~~G~-lwva~~~~~~v~~  224 (297)
T 3g4e_A          153 -----GLDWSLDHKIFYYIDSLSYSVDAFDYDLQT--GQISNRRSVYKLEKEEQIPDGMCIDAEGK-LWVACYNGGRVIR  224 (297)
T ss_dssp             -----EEEECTTSCEEEEEEGGGTEEEEEEECTTT--CCEEEEEEEEECCGGGCEEEEEEEBTTSC-EEEEEETTTEEEE
T ss_pred             -----ceEEcCCCCEEEEecCCCCcEEEEeccCCC--CcccCcEEEEECCCCCCCCCeeEECCCCC-EEEEEcCCCEEEE
Confidence                 23333 45 577777655566666554211  122221   12221111234456666887 55554 4556999


Q ss_pred             EECCCCe-EEEEeE
Q 044435          328 YHLDMHR-VESFLV  340 (378)
Q Consensus       328 ydl~~~~-~~~v~~  340 (378)
                      ||+++++ ...+..
T Consensus       225 ~d~~tG~~~~~i~~  238 (297)
T 3g4e_A          225 LDPVTGKRLQTVKL  238 (297)
T ss_dssp             ECTTTCCEEEEEEC
T ss_pred             EcCCCceEEEEEEC
Confidence            9999655 455543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.58  E-value=3.5  Score=43.70  Aligned_cols=185  Identities=6%  Similarity=-0.015  Sum_probs=97.7

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~  188 (378)
                      ++........+.++|..+++.........      .....+.+.+.+ .+-+.+ .      ....+.+++..++.....
T Consensus       975 ~l~~g~~~g~i~i~d~~~~~~~~~~~~h~------~~v~~l~~s~dg-~~l~s~-~------~dg~i~vwd~~~~~~~~~ 1040 (1249)
T 3sfz_A          975 YVAFGDEDGAIKIIELPNNRVFSSGVGHK------KAVRHIQFTADG-KTLISS-S------EDSVIQVWNWQTGDYVFL 1040 (1249)
T ss_dssp             EEEEEETTSCCEEEETTTTSCEEECCCCS------SCCCCEEECSSS-SCEEEE-C------SSSBEEEEETTTTEEECC
T ss_pred             EEEEEcCCCCEEEEEcCCCceeeecccCC------CceEEEEECCCC-CEEEEE-c------CCCEEEEEECCCCceEEE
Confidence            34444566678888888776544322211      112234454432 222222 1      134688888888766543


Q ss_pred             CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCe
Q 044435          189 KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGC  266 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~  266 (378)
                      ...   ..  ...   .-...-+|.+. .+..+      ..|..+|+.+.+.... ......-      . .+... +|+
T Consensus      1041 ~~~---~~--~v~---~~~~~~~~~l~-~~~~d------g~v~vwd~~~~~~~~~~~~~~~~v------~-~~~~s~d~~ 1098 (1249)
T 3sfz_A         1041 QAH---QE--TVK---DFRLLQDSRLL-SWSFD------GTVKVWNVITGRIERDFTCHQGTV------L-SCAISSDAT 1098 (1249)
T ss_dssp             BCC---SS--CEE---EEEECSSSEEE-EEESS------SEEEEEETTTTCCCEEEECCSSCC------C-CEEECSSSS
T ss_pred             ecC---CC--cEE---EEEEcCCCcEE-EEECC------CcEEEEECCCCceeEEEcccCCcE------E-EEEECCCCC
Confidence            222   11  110   00111144443 33332      2789999887654322 2111110      1 23333 677


Q ss_pred             EEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          267 LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       267 L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      +.+....++.+.+|.++....      ...+.........+++.++|..++....++.+..||+++++.
T Consensus      1099 ~l~s~s~d~~v~iwd~~~~~~------~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~ 1161 (1249)
T 3sfz_A         1099 KFSSTSADKTAKIWSFDLLSP------LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQL 1161 (1249)
T ss_dssp             SCEEECCSSCCCEECSSSSSC------SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCC
T ss_pred             EEEEEcCCCcEEEEECCCcce------eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCce
Confidence            766666667899998875321      111222111255677888999888888788899999987764

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=90.52  E-value=8.2  Score=33.60  Aligned_cols=208  Identities=9%  Similarity=-0.014  Sum_probs=103.6

Q ss_pred             eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|-|.+.+ ....++++|+.+++...+.....      ....++.+++.. ...| . .. ........+.+|+..++
T Consensus        53 ~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~------~~~~~i~~~~dg-~l~v-~-~~-~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           53 DRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK------ANPAAIKIHKDG-RLFV-C-YL-GDFKSTGGIFAATENGD  122 (333)
T ss_dssp             CTTSCEEEEETTTCEEEEECTTTCCEEEEEECSS------SSEEEEEECTTS-CEEE-E-EC-TTSSSCCEEEEECTTSC
T ss_pred             CCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCC------CCcceEEECCCC-cEEE-E-eC-CCCCCCceEEEEeCCCC
Confidence            3566665543 45679999999988776532111      123466666553 2222 2 11 11011236778887776


Q ss_pred             cEEec-CcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435          184 LWRRI-KNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l  260 (378)
                      .-+.. ...   ..  .   .....+.+  +|.+|+.............|..+|..++++..+.-  ...    ... .+
T Consensus       123 ~~~~~~~~~---~~--~---~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~----~~~-~i  187 (333)
T 2dg1_A          123 NLQDIIEDL---ST--A---YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ--NIS----VAN-GI  187 (333)
T ss_dssp             SCEEEECSS---SS--C---CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE--EES----SEE-EE
T ss_pred             EEEEEEccC---cc--C---CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec--CCC----ccc-ce
Confidence            54422 211   00  0   01112222  57776654321100112478999988766655411  000    001 23


Q ss_pred             EEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEE-EEe--cC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCC
Q 044435          261 YVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKL-FTM--NE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMH  333 (378)
Q Consensus       261 ~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~-~~i--~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~  333 (378)
                      +.. +|+ |++.......+.+|.++..+  ...... ..+  .. ......-+++.++|. +++.. .+..+..||++++
T Consensus       188 ~~~~dg~~l~v~~~~~~~i~~~d~~~~g--~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~v~~~d~~g~  264 (333)
T 2dg1_A          188 ALSTDEKVLWVTETTANRLHRIALEDDG--VTIQPFGATIPYYFTGHEGPDSCCIDSDDN-LYVAMYGQGRVLVFNKRGY  264 (333)
T ss_dssp             EECTTSSEEEEEEGGGTEEEEEEECTTS--SSEEEEEEEEEEECCSSSEEEEEEEBTTCC-EEEEEETTTEEEEECTTSC
T ss_pred             EECCCCCEEEEEeCCCCeEEEEEecCCC--cCcccccceEEEecCCCCCCCceEECCCCC-EEEEEcCCCEEEEECCCCC
Confidence            333 564 77766555577777665322  112211 111  11 111234466667888 55554 4457999999877


Q ss_pred             eEEEEeE
Q 044435          334 RVESFLV  340 (378)
Q Consensus       334 ~~~~v~~  340 (378)
                      ..+.+..
T Consensus       265 ~~~~~~~  271 (333)
T 2dg1_A          265 PIGQILI  271 (333)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            7777753

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=90.20  E-value=8.3  Score=33.14  Aligned_cols=113  Identities=11%  Similarity=0.133  Sum_probs=63.4

Q ss_pred             CeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCcccceEEEE-C---CeEEEEEcCCCcEEEEEecc
Q 044435          212 GALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGGELSGVYVL-K---GCLSLLCKYSEPWDLWVMKE  284 (378)
Q Consensus       212 G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~~~l~~~-~---G~L~~~~~~~~~l~iW~l~~  284 (378)
                      |.+...+..+.      .|..+|+.+.  .+... .+..+...    -. .+... +   +.+.+....++.+.||.++.
T Consensus       170 ~~~l~sgs~D~------~v~lwd~~~~~~~~~~~~~l~~H~~~----V~-~v~~sp~~~~~~~las~s~D~~v~iWd~~~  238 (297)
T 2pm7_B          170 SRKFVTGGADN------LVKIWKYNSDAQTYVLESTLEGHSDW----VR-DVAWSPTVLLRSYMASVSQDRTCIIWTQDN  238 (297)
T ss_dssp             CCEEEEEETTS------CEEEEEEETTTTEEEEEEEECCCSSC----EE-EEEECCCCSSSEEEEEEETTSCEEEEEESS
T ss_pred             cceEEEEcCCC------cEEEEEEcCCCceEEEEEEecCCCCc----eE-EEEECCCCCCceEEEEEECCCcEEEEEeCC
Confidence            34555554442      5777877653  34333 33332211    11 23332 3   36666666677999999876


Q ss_pred             CCCCcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC-CCeEEEE
Q 044435          285 YGVKDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD-MHRVESF  338 (378)
Q Consensus       285 ~~~~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~-~~~~~~v  338 (378)
                      ..  ..|.... +. . ......-+.+.++|..++....++.+..++.. .++|+.+
T Consensus       239 ~~--~~~~~~~-~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~  292 (297)
T 2pm7_B          239 EQ--GPWKKTL-LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPA  292 (297)
T ss_dssp             TT--SCCEEEE-SSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC
T ss_pred             CC--Cccceee-eecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEec
Confidence            32  3465432 21 1 11124557778899877777777778888876 4567765

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=90.19  E-value=8.4  Score=33.17  Aligned_cols=191  Identities=12%  Similarity=0.077  Sum_probs=94.8

Q ss_pred             ccceE-EEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGLL-ALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GLl-~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|-+ +....+..+.|||..+++....-...      ......+.+.+.. .+ ++...      ....+.+|+.+++.
T Consensus        75 ~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~-~~-l~s~~------~d~~i~iwd~~~~~  140 (312)
T 4ery_A           75 SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGH------SNYVFCCNFNPQS-NL-IVSGS------FDESVRIWDVKTGK  140 (312)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSS-SE-EEEEE------TTSCEEEEETTTCC
T ss_pred             CCCCEEEEECCCCEEEEEECCCCcEEEEEcCC------CCCEEEEEEcCCC-CE-EEEEe------CCCcEEEEECCCCE
Confidence            34443 33346677889998887654321111      1123345555543 22 22222      12457888887653


Q ss_pred             EEe-cCcccCCCccccccccCCccee--eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435          185 WRR-IKNIKNFPYSWADHSYGGNGAF--VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       185 W~~-~~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      -.. ....   ..  .     -.++.  -+|.+...+..+.      .|..+|+.+.+...........     ....+.
T Consensus       141 ~~~~~~~~---~~--~-----v~~~~~~~~~~~l~~~~~d~------~i~~wd~~~~~~~~~~~~~~~~-----~~~~~~  199 (312)
T 4ery_A          141 CLKTLPAH---SD--P-----VSAVHFNRDGSLIVSSSYDG------LCRIWDTASGQCLKTLIDDDNP-----PVSFVK  199 (312)
T ss_dssp             EEEEECCC---SS--C-----EEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEECCSSCC-----CEEEEE
T ss_pred             EEEEecCC---CC--c-----EEEEEEcCCCCEEEEEeCCC------cEEEEECCCCceeeEEeccCCC-----ceEEEE
Confidence            211 1110   00  0     01122  2566555555442      6899999876543321111111     110233


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG--YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~--~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      .. +|+..++...++.+.+|.+...      .....+.. ..  ..........++..++....++.+..||+++++...
T Consensus       200 ~~~~~~~l~~~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~  273 (312)
T 4ery_A          200 FSPNGKYILAATLDNTLKLWDYSKG------KCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQ  273 (312)
T ss_dssp             ECTTSSEEEEEETTTEEEEEETTTT------EEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCC------cEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhh
Confidence            32 5777777767779999987652      12233322 11  111112222456655556667779999999887543

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=90.07  E-value=19  Score=37.99  Aligned_cols=199  Identities=10%  Similarity=-0.021  Sum_probs=98.8

Q ss_pred             eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|- ++....+..+.|||..|++....-...      ......+.+.+..+...++....      ...+.+++..++
T Consensus       666 s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~l~sg~~------d~~v~vwd~~~~  733 (1249)
T 3sfz_A          666 SSDDSYIATCSADKKVKIWDSATGKLVHTYDEH------SEQVNCCHFTNKSNHLLLATGSN------DFFLKLWDLNQK  733 (1249)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECC------SSCEEEEEECSSSSCCEEEEEET------TSCEEEEETTSS
T ss_pred             ecCCCEEEEEeCCCeEEEEECCCCceEEEEcCC------CCcEEEEEEecCCCceEEEEEeC------CCeEEEEECCCc
Confidence            33453 444456677999999998765432211      12233556666544444444332      345788888776


Q ss_pred             cEEec-CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCC------CCc
Q 044435          184 LWRRI-KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEG------GGG  255 (378)
Q Consensus       184 ~W~~~-~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~------~~~  255 (378)
                      .-... ...   ..  ..   ..-...-+|.....+..++      .|..+|+.+.... .+..+......      ...
T Consensus       734 ~~~~~~~~h---~~--~v---~~~~~sp~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1249)
T 3sfz_A          734 ECRNTMFGH---TN--SV---NHCRFSPDDELLASCSADG------TLRLWDVRSANERKSINVKRFFLSSEDPPEDVEV  799 (1249)
T ss_dssp             SEEEEECCC---SS--CE---EEEEECSSTTEEEEEESSS------EEEEEEGGGTEEEEEEECCCCC--------CCCC
T ss_pred             chhheecCC---CC--CE---EEEEEecCCCEEEEEECCC------eEEEEeCCCCcccceecccccccccCCccccccc
Confidence            43221 111   00  00   0001122455555554442      7888998765432 22322110000      000


Q ss_pred             ccceEEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          256 ELSGVYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       256 ~~~~l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      .+..+.. .+|...++.. .+.+.+|.+....      ....+.. .......+.+.++|..++....++.+..||.+++
T Consensus       800 ~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~------~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~  872 (1249)
T 3sfz_A          800 IVKCCSWSADGDKIIVAA-KNKVLLFDIHTSG------LLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR  872 (1249)
T ss_dssp             CBCCCCBCTTSSEEEEEE-TTEEEEEETTTCC------EEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT
T ss_pred             eEEEEEECCCCCEEEEEc-CCcEEEEEecCCC------ceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC
Confidence            0001111 2455544443 4577788766421      1222222 2222456777788887777777777999999887


Q ss_pred             eEE
Q 044435          334 RVE  336 (378)
Q Consensus       334 ~~~  336 (378)
                      +..
T Consensus       873 ~~~  875 (1249)
T 3sfz_A          873 LKV  875 (1249)
T ss_dssp             EEE
T ss_pred             cee
Confidence            644

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=89.80  E-value=16  Score=35.84  Aligned_cols=180  Identities=10%  Similarity=0.050  Sum_probs=86.6

Q ss_pred             cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEe-cCcccC
Q 044435          115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRR-IKNIKN  193 (378)
Q Consensus       115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~-~~~~~~  193 (378)
                      .+..+.|||...+....+......+   ......+.+.+....-.++....      ...+.+++.+++.-.. +...  
T Consensus       492 ~D~~i~iwd~~~~~~~~~~~~~~~h---~~~v~~~~~~~~~~~~~l~s~s~------d~~v~vwd~~~~~~~~~~~~h--  560 (694)
T 3dm0_A          492 RDRTIKLWNTLGECKYTISEGGEGH---RDWVSCVRFSPNTLQPTIVSASW------DKTVKVWNLSNCKLRSTLAGH--  560 (694)
T ss_dssp             TTSCEEEECTTSCEEEEECSSTTSC---SSCEEEEEECSCSSSCEEEEEET------TSCEEEEETTTCCEEEEECCC--
T ss_pred             CCCEEEEEECCCCcceeeccCCCCC---CCcEEEEEEeCCCCcceEEEEeC------CCeEEEEECCCCcEEEEEcCC--
Confidence            4556777776554433332221111   12233455555543333333321      3457888887653322 1111  


Q ss_pred             CCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEc
Q 044435          194 FPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCK  272 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~  272 (378)
                            ......-...-+|.+...+..+.      .|..+|+.+.+-.. .+....     ... .+... +|.+. +..
T Consensus       561 ------~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~~~-~~~~~~-----~v~-~~~~sp~~~~l-~~~  620 (694)
T 3dm0_A          561 ------TGYVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKKLY-SLEANS-----VIH-ALCFSPNRYWL-CAA  620 (694)
T ss_dssp             ------SSCEEEEEECTTSSEEEEEETTS------BCEEEETTTTEEEE-CCBCSS-----CEE-EEEECSSSSEE-EEE
T ss_pred             ------CCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCceEE-EecCCC-----cEE-EEEEcCCCcEE-EEE
Confidence                  00000001122566665555543      68899988765422 222111     111 33333 34433 333


Q ss_pred             CCCcEEEEEeccCCCCcceEEEEEecC-------------------CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435          273 YSEPWDLWVMKEYGVKDSWSKLFTMNE-------------------NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD  331 (378)
Q Consensus       273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~-------------------~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~  331 (378)
                      .+..+.||.+...      ..+..+..                   ......-+.++++|..++....++.+..+|+.
T Consensus       621 ~~~~i~iwd~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          621 TEHGIKIWDLESK------SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             ETTEEEEEETTTT------EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             cCCCEEEEECCCC------CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            3456888987642      11111111                   01124456778899988888888888888875

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=89.60  E-value=10  Score=33.31  Aligned_cols=182  Identities=12%  Similarity=0.045  Sum_probs=96.5

Q ss_pred             cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      +|.++....+..+.+||..+++....-...      ......+.+.+.. .+ ++...      ....+.+++.+++.-.
T Consensus       154 ~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h------~~~v~~~~~~~~~-~~-l~sg~------~d~~v~~wd~~~~~~~  219 (340)
T 1got_B          154 DNQIVTSSGDTTCALWDIETGQQTTTFTGH------TGDVMSLSLAPDT-RL-FVSGA------CDASAKLWDVREGMCR  219 (340)
T ss_dssp             TTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSCEEEEETTTCSEE
T ss_pred             CCcEEEEECCCcEEEEECCCCcEEEEEcCC------CCceEEEEECCCC-CE-EEEEe------CCCcEEEEECCCCeeE
Confidence            455544456677899999887754322111      1123456665533 22 22222      1345778887765322


Q ss_pred             e-cCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeee-ecCCCCCCCCCCcccceEEE
Q 044435          187 R-IKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       187 ~-~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~  262 (378)
                      . ....   .       ..-.++.+  +|.....+..+.      .|..+|+.+.+-.. +..+....     .+..+..
T Consensus       220 ~~~~~h---~-------~~v~~v~~~p~~~~l~s~s~d~------~v~iwd~~~~~~~~~~~~~~~~~-----~v~~~~~  278 (340)
T 1got_B          220 QTFTGH---E-------SDINAICFFPNGNAFATGSDDA------TCRLFDLRADQELMTYSHDNIIC-----GITSVSF  278 (340)
T ss_dssp             EEECCC---S-------SCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCCS-----CEEEEEE
T ss_pred             EEEcCC---c-------CCEEEEEEcCCCCEEEEEcCCC------cEEEEECCCCcEEEEEccCCccc-----ceEEEEE
Confidence            1 1110   0       00012222  566655555443      68999998765432 23222111     1102333


Q ss_pred             E-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          263 L-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                      . +|++.++...++.+.+|.+..      ......+........-+++.++|..++-...++.+..+|
T Consensus       279 s~~g~~l~~g~~d~~i~vwd~~~------~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWDALK------ADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTT------CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEECCCCeEEEEEccc------CcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            3 688888887778999998764      223334433111255677788888677777677676664

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=89.53  E-value=9.4  Score=32.79  Aligned_cols=66  Identities=9%  Similarity=0.041  Sum_probs=44.4

Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCC---CEEEEEeCCCeEEEEECCCC
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRG---DKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g---~~v~~~~~~~~~~~ydl~~~  333 (378)
                      |++.+....++.+.||.+...  ...|.....+.. .. ...-+.+.+++   ..++-...++.+..+|+++.
T Consensus       170 ~~~l~sgs~D~~v~lwd~~~~--~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          170 SRKFVTGGADNLVKIWKYNSD--AQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             CCEEEEEETTSCEEEEEEETT--TTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cceEEEEcCCCcEEEEEEcCC--CceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence            456666666779999998753  245777766665 32 25667777764   55555666777888988763

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=89.44  E-value=9.2  Score=32.55  Aligned_cols=95  Identities=14%  Similarity=0.127  Sum_probs=56.2

Q ss_pred             EEEEEEcCCceeee-ecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEE
Q 044435          229 LILAFDLNIETFYS-MPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIP  306 (378)
Q Consensus       229 ~i~~fD~~~~~~~~-i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~  306 (378)
                      .|..||+.+.+... +.....       .+..+... +|. .++...++.+.+|.+...      .....+........-
T Consensus       206 ~i~i~d~~~~~~~~~~~~~~~-------~i~~~~~~~~~~-l~~~~~dg~v~iwd~~~~------~~~~~~~~~~~~i~~  271 (313)
T 3odt_A          206 LIKLVDMHTGDVLRTYEGHES-------FVYCIKLLPNGD-IVSCGEDRTVRIWSKENG------SLKQVITLPAISIWS  271 (313)
T ss_dssp             EEEEEETTTCCEEEEEECCSS-------CEEEEEECTTSC-EEEEETTSEEEEECTTTC------CEEEEEECSSSCEEE
T ss_pred             eEEEEECCchhhhhhhhcCCc-------eEEEEEEecCCC-EEEEecCCEEEEEECCCC------ceeEEEeccCceEEE
Confidence            79999998765432 222111       11033443 454 344445569999987752      223334331112556


Q ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          307 LAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       307 ~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      +.+.++|. ++....++.+..||++++++...
T Consensus       272 ~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~  302 (313)
T 3odt_A          272 VDCMSNGD-IIVGSSDNLVRIFSQEKSRWASE  302 (313)
T ss_dssp             EEECTTSC-EEEEETTSCEEEEESCGGGCCC-
T ss_pred             EEEccCCC-EEEEeCCCcEEEEeCCCCceeeh
Confidence            77788888 66677788899999998876543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=89.33  E-value=18  Score=35.65  Aligned_cols=192  Identities=13%  Similarity=-0.014  Sum_probs=99.7

Q ss_pred             cEEEEcCcccce--eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435          118 GIILLNPLTKKH--RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP  195 (378)
Q Consensus       118 ~~~V~NP~t~~~--~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p  195 (378)
                      .+++++..|++-  +.+-..+..    .....+..+.+.. .|-++.... .  .....+.+.+..++.|+.+...   .
T Consensus       203 ~v~~~~l~t~~~~~~lv~~~~~~----~~~~~~~~~SpDG-~~l~~~~~~-~--~~~~~l~~~~~~~~~~~~l~~~---~  271 (695)
T 2bkl_A          203 TIRYHTLGTEPSKDTVVHERTGD----PTTFLQSDLSRDG-KYLFVYILR-G--WSENDVYWKRPGEKDFRLLVKG---V  271 (695)
T ss_dssp             EEEEEETTSCGGGCEEEECCCCC----TTCEEEEEECTTS-CCEEEEEEE-T--TTEEEEEEECTTCSSCEEEEEC---S
T ss_pred             EEEEEECCCCchhceEEEecCCC----CEEEEEEEECCCC-CEEEEEEeC-C--CCceEEEEEcCCCCceEEeecC---C
Confidence            388888887662  122211111    1123355555543 444444332 1  1234566666656777776432   1


Q ss_pred             ccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce---eeeecCCCCCCCCCCcccceEEEECCeEEEEEc
Q 044435          196 YSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET---FYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCK  272 (378)
Q Consensus       196 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~---~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~  272 (378)
                      .  .    ....+.-+|.+|+....+..   ...|..+|+.+..   |..+-.+...     ..+..+...+|+|.+...
T Consensus       272 ~--~----~~~~~~~~g~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~~~-----~~l~~~~~~~~~lv~~~~  337 (695)
T 2bkl_A          272 G--A----KYEVHAWKDRFYVLTDEGAP---RQRVFEVDPAKPARASWKEIVPEDSS-----ASLLSVSIVGGHLSLEYL  337 (695)
T ss_dssp             S--C----CEEEEEETTEEEEEECTTCT---TCEEEEEBTTBCSGGGCEEEECCCSS-----CEEEEEEEETTEEEEEEE
T ss_pred             C--c----eEEEEecCCcEEEEECCCCC---CCEEEEEeCCCCCccCCeEEecCCCC-----CeEEEEEEECCEEEEEEE
Confidence            1  1    11233356776666543211   2489999987654   6655222111     111134445889888877


Q ss_pred             CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEEe
Q 044435          273 YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       273 ~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v~  339 (378)
                      .++...||.++-.+  .   ....+.. .......+++.++|+.+++....    ..++.||+++++.+.+.
T Consensus       338 ~dg~~~l~~~~~~g--~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          338 KDATSEVRVATLKG--K---PVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             ETTEEEEEEEETTC--C---EEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             ECCEEEEEEEeCCC--C---eeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            77788888887422  1   2233433 12112223334567656655432    25999999998877764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=88.87  E-value=11  Score=32.49  Aligned_cols=112  Identities=18%  Similarity=0.234  Sum_probs=70.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEecc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKE  284 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~  284 (378)
                      +|.+...+..++      .|..+|+.++  .+..+ .+..+..     .+..+...   +|.+.+....++.+.+|.++.
T Consensus        22 ~~~~l~~~~~dg------~i~iw~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~   90 (351)
T 3f3f_A           22 YGRHVATCSSDQ------HIKVFKLDKDTSNWELSDSWRAHDS-----SIVAIDWASPEYGRIIASASYDKTVKLWEEDP   90 (351)
T ss_dssp             SSSEEEEEETTS------EEEEEEECSSSCCEEEEEEEECCSS-----CEEEEEECCGGGCSEEEEEETTSCEEEEEECT
T ss_pred             CCCEEEEeeCCC------eEEEEECCCCCCcceecceeccCCC-----cEEEEEEcCCCCCCEEEEEcCCCeEEEEecCC
Confidence            566555554442      6888888754  22222 2222211     11133433   377878777778999999986


Q ss_pred             CC---CCcceEEEEEecC-CCceeEEEEEEeC--CCEEEEEeCCCeEEEEECCCCe
Q 044435          285 YG---VKDSWSKLFTMNE-NGYRVIPLAFSSR--GDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       285 ~~---~~~~W~~~~~i~~-~~~~~~~~~~~~~--g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      ..   ....|.....+.. .. ...-+.+.++  +..++....++.+..||+++.+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~  145 (351)
T 3f3f_A           91 DQEECSGRRWNKLCTLNDSKG-SLYSVKFAPAHLGLKLACLGNDGILRLYDALEPS  145 (351)
T ss_dssp             TSCTTSSCSEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTCEEEEEECSSTT
T ss_pred             CcccccccCcceeeeecccCC-ceeEEEEcCCCCCcEEEEecCCCcEEEecCCChH
Confidence            42   1245777777765 33 2556777777  8877778878889999988765

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=88.85  E-value=13  Score=33.36  Aligned_cols=101  Identities=10%  Similarity=0.126  Sum_probs=60.6

Q ss_pred             EEEEEEcCCceeeee---cCCCCCCCCCCcccceEEE--ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCce
Q 044435          229 LILAFDLNIETFYSM---PMPGFGNEGGGGELSGVYV--LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYR  303 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~~~l~~--~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~  303 (378)
                      .|..+|+.+++....   ..|..-.   ..-. .+..  .++.+.+....++.+.+|-+.....     .+..+......
T Consensus       181 ~i~~wd~~~~~~~~~~~~~~~~~h~---~~v~-~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~-----~~~~~~~h~~~  251 (380)
T 3iz6_a          181 TCVLWDVTTGQRISIFGSEFPSGHT---ADVL-SLSINSLNANMFISGSCDTTVRLWDLRITSR-----AVRTYHGHEGD  251 (380)
T ss_dssp             CEEEECTTTCCEEEEECCCSSSSCC---SCEE-EEEECSSSCCEEEEEETTSCEEEEETTTTCC-----CCEEECCCSSC
T ss_pred             cEEEEEcCCCcEEEEeecccCCCCc---cCeE-EEEeecCCCCEEEEEECCCeEEEEECCCCCc-----ceEEECCcCCC
Confidence            688999987765433   2222111   1111 2232  2678888888888999998864221     11222221112


Q ss_pred             eEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          304 VIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       304 ~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      ..-+++.++|..++-...++.+..+|+++++...+
T Consensus       252 v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~  286 (380)
T 3iz6_a          252 INSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQV  286 (380)
T ss_dssp             CCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEE
Confidence            45677888898777676777799999998765443

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=88.81  E-value=4  Score=37.28  Aligned_cols=111  Identities=14%  Similarity=0.064  Sum_probs=67.8

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCC--------CCCCCCCCcccceEEEE--CCeEEEEEcCC----
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMP--------GFGNEGGGGELSGVYVL--KGCLSLLCKYS----  274 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP--------~~~~~~~~~~~~~l~~~--~G~L~~~~~~~----  274 (378)
                      -+|.++|....+       .|.++|+.++.-..+ +..        .+.... ...  .++..  .++||++....    
T Consensus       236 ~dG~~~~vs~~g-------~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~-g~q--~~a~~~~~~~lyV~~~~~~~~~  305 (386)
T 3sjl_D          236 KAGRLVWPTYTG-------KIHQIDLSSGDAKFLPAVEALTEAERADGWRPG-GWQ--QVAYHRALDRIYLLVDQRDEWR  305 (386)
T ss_dssp             TTTEEEEEBTTS-------EEEEEECTTSSCEECCCEESSCHHHHHTTEEEC-SSS--CEEEETTTTEEEEEEEECCTTC
T ss_pred             CCCcEEEEeCCC-------EEEEEECCCCcceeecceeccccccccccccCC-Ccc--eeeECCCCCeEEEEeccccccc
Confidence            378899977643       699999987653322 110        010000 011  23443  46888876421    


Q ss_pred             --C-cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEeC-CCeEEEEECCCCeEE
Q 044435          275 --E-PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQKN-SKDHCWYHLDMHRVE  336 (378)
Q Consensus       275 --~-~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~~-~~~~~~ydl~~~~~~  336 (378)
                        . --+||++|-    .++..+.+|+. ..  ..-+++.++|. .+|.... ++.+.+||..+++..
T Consensus       306 hk~~~~~V~viD~----~t~kv~~~i~vg~~--~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          306 HKTASRFVVVLDA----KTGERLAKFEMGHE--IDSINVSQDEKPLLYALSTGDKTLYIHDAESGEEL  367 (386)
T ss_dssp             TTSCEEEEEEEET----TTCCEEEEEEEEEE--ECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEE
T ss_pred             cCCCCCEEEEEEC----CCCeEEEEEECCCC--cceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEE
Confidence              1 368999986    45777788876 42  34577788886 4555433 567999999998844

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=88.78  E-value=13  Score=33.27  Aligned_cols=97  Identities=10%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435          229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL  307 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~  307 (378)
                      .|..||+.+.+....-.. +.     ..+..+... +|.+.++...++.+.+|.+....      ....+........-+
T Consensus       228 ~i~~~d~~~~~~~~~~~~-~~-----~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------~~~~~~~~~~~i~~~  295 (425)
T 1r5m_A          228 AIFVYQITEKTPTGKLIG-HH-----GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN------SQNCFYGHSQSIVSA  295 (425)
T ss_dssp             CEEEEETTCSSCSEEECC-CS-----SCEEEEEEETTTTEEEEEETTSCEEEECSSSBS------CSEEECCCSSCEEEE
T ss_pred             eEEEEEcCCCceeeeecc-CC-----CceEEEEECCCCCEEEEEcCCCEEEEEECCCCc------cceEecCCCccEEEE
Confidence            699999887644322111 11     111133443 67766666667799999877522      122232211125566


Q ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          308 AFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                      .+.++| .++....++.+..||+++.+....
T Consensus       296 ~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          296 SWVGDD-KVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             EEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             EECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence            777777 677777788899999988875544

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=88.71  E-value=19  Score=35.81  Aligned_cols=115  Identities=11%  Similarity=0.026  Sum_probs=67.4

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCC--ceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNI--ETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~--~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      -++.+|+....+..   ...|..+|+.+  +.|..+- |....     .+..+...+++|.+....++...||.++-.+ 
T Consensus       326 dg~~l~~~s~~~~~---~~~l~~~d~~~~~~~~~~l~-~~~~~-----~l~~~~~~~~~lv~~~~~dg~~~l~~~~~~g-  395 (741)
T 1yr2_A          326 VGDQLWFVSGDGAP---LKKIVRVDLSGSTPRFDTVV-PESKD-----NLESVGIAGNRLFASYIHDAKSQVLAFDLDG-  395 (741)
T ss_dssp             ETTEEEEEECTTCT---TCEEEEEECSSSSCEEEEEE-CCCSS-----EEEEEEEEBTEEEEEEEETTEEEEEEEETTS-
T ss_pred             cCCEEEEEECCCCC---CCEEEEEeCCCCccccEEEe-cCCCC-----eEEEEEEECCEEEEEEEECCEEEEEEEeCCC-
Confidence            35567777654321   24799999987  5677662 32211     1113344588888887777777888887422 


Q ss_pred             CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC----CeEEEEECCCCeEEEE
Q 044435          288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS----KDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~----~~~~~ydl~~~~~~~v  338 (378)
                       .   ....+.. .......++..++|+.+++....    ..++.||+.+++.+.+
T Consensus       396 -~---~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          396 -K---PAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             -C---EEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             -C---ceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence             1   2334443 22123334445677655554322    3599999999887666

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=88.47  E-value=11  Score=32.35  Aligned_cols=106  Identities=13%  Similarity=0.076  Sum_probs=59.6

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.+||......      .|..||+.++....+..|....        .++.. +|+|++..  ...+.+|..+.    .
T Consensus        24 ~~~l~~~d~~~~------~i~~~d~~~~~~~~~~~~~~~~--------~i~~~~dG~l~v~~--~~~l~~~d~~~----g   83 (297)
T 3g4e_A           24 SNSLLFVDIPAK------KVCRWDSFTKQVQRVTMDAPVS--------SVALRQSGGYVATI--GTKFCALNWKE----Q   83 (297)
T ss_dssp             TTEEEEEETTTT------EEEEEETTTCCEEEEECSSCEE--------EEEEBTTSSEEEEE--TTEEEEEETTT----T
T ss_pred             CCEEEEEECCCC------EEEEEECCCCcEEEEeCCCceE--------EEEECCCCCEEEEE--CCeEEEEECCC----C
Confidence            488999876553      7999999988777666653221        34443 67766654  22343333221    2


Q ss_pred             ceEEEEEecC--CCceeEEEEEEeCCCEEEEEe------------CCCeEEEEECCCCeEEEE
Q 044435          290 SWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQK------------NSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       290 ~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~------------~~~~~~~ydl~~~~~~~v  338 (378)
                      .+..+.....  ......-+.+.++|. +++..            ....++.+|.+. +.+.+
T Consensus        84 ~~~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~  144 (297)
T 3g4e_A           84 SAVVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKY  144 (297)
T ss_dssp             EEEEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEE
T ss_pred             cEEEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECCC-CEEEE
Confidence            3544444432  222234466667888 55543            123588888864 44333

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=88.41  E-value=11  Score=32.23  Aligned_cols=197  Identities=13%  Similarity=0.022  Sum_probs=95.2

Q ss_pred             cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec-CcccC
Q 044435          115 YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI-KNIKN  193 (378)
Q Consensus       115 ~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~-~~~~~  193 (378)
                      ....+.++||.++++..+..+.....  .....++.+++..+...|..  .      ...+.+|+.. +..+.. ...  
T Consensus        44 ~~~~i~~~d~~~g~~~~~~~~~~~~~--~~~~~~i~~~~~~g~l~v~~--~------~~~l~~~d~~-g~~~~~~~~~--  110 (314)
T 1pjx_A           44 PAGEILRIDLKTGKKTVICKPEVNGY--GGIPAGCQCDRDANQLFVAD--M------RLGLLVVQTD-GTFEEIAKKD--  110 (314)
T ss_dssp             ECCEEEEECTTTCCEEEEECCEETTE--ECCEEEEEECSSSSEEEEEE--T------TTEEEEEETT-SCEEECCSBC--
T ss_pred             CCCEEEEEeCCCCcEEEEEecccCCC--CCCCceEEEecCCCcEEEEE--C------CCCEEEEeCC-CCEEEEEecc--
Confidence            45678999999998876543110000  11234566665533322211  1      1257788887 766554 322  


Q ss_pred             CCccccccccCCcceee--CCeEEEEeecCC---------CcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE
Q 044435          194 FPYSWADHSYGGNGAFV--NGALHWLANQNQ---------DEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       194 ~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~---------~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~  262 (378)
                       ..  .........+.+  +|.+|+......         .......|..+|.. +++..+.-.  ...    -. .++.
T Consensus       111 -~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~----~~-~i~~  179 (314)
T 1pjx_A          111 -SE--GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQF----PN-GIAV  179 (314)
T ss_dssp             -TT--SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESS----EE-EEEE
T ss_pred             -CC--CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCC----cc-eEEE
Confidence             11  111111223443  677776554320         00011368899987 555443100  000    00 2333


Q ss_pred             E-----CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEE---EecCCC-ceeEEEEEEeCCCEEEEEe-CCCeEEEEECC
Q 044435          263 L-----KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLF---TMNENG-YRVIPLAFSSRGDKVLFQK-NSKDHCWYHLD  331 (378)
Q Consensus       263 ~-----~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~---~i~~~~-~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~  331 (378)
                      .     +| .|++.......+.+|.++..+   ......   .++... ....-+++.++|. +++.. ....+..||++
T Consensus       180 ~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g---~~~~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~~~~~~i~~~d~~  255 (314)
T 1pjx_A          180 RHMNDGRPYQLIVAETPTKKLWSYDIKGPA---KIENKKVWGHIPGTHEGGADGMDFDEDNN-LLVANWGSSHIEVFGPD  255 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTEEEEEEEEETT---EEEEEEEEEECCCCSSCEEEEEEEBTTCC-EEEEEETTTEEEEECTT
T ss_pred             ecccCCCCCEEEEEECCCCeEEEEECCCCC---ccccceEEEECCCCCCCCCCceEECCCCC-EEEEEcCCCEEEEEcCC
Confidence            3     45 466666555577777665321   232222   222111 2234456666787 55543 45679999998


Q ss_pred             CCe-EEEEe
Q 044435          332 MHR-VESFL  339 (378)
Q Consensus       332 ~~~-~~~v~  339 (378)
                      +++ .+.+.
T Consensus       256 ~g~~~~~~~  264 (314)
T 1pjx_A          256 GGQPKMRIR  264 (314)
T ss_dssp             CBSCSEEEE
T ss_pred             CCcEeEEEe
Confidence            544 44443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=88.03  E-value=16  Score=33.49  Aligned_cols=199  Identities=7%  Similarity=-0.026  Sum_probs=102.5

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      +.+|+++....+..+.|||..+++....-...      ......+.+.+..+.-.++....      ...+.+++..++.
T Consensus       171 ~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h------~~~v~~l~~~~~~~~~~l~s~s~------d~~i~vwd~~~~~  238 (464)
T 3v7d_B          171 AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGH------NSTVRCLDIVEYKNIKYIVTGSR------DNTLHVWKLPKES  238 (464)
T ss_dssp             CSTTEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEEEESSSCEEEEEEET------TSCEEEEECCCCC
T ss_pred             cCCCEEEEEeCCCCEEEEECCCCcEEEEECCC------CCccEEEEEecCCCCCEEEEEcC------CCcEEEeeCCCCc
Confidence            44666666667788999999998765432211      11233455554333333333321      2356777776543


Q ss_pred             EEecCcc-cC------CCcc----cccc---ccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCC
Q 044435          185 WRRIKNI-KN------FPYS----WADH---SYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGN  250 (378)
Q Consensus       185 W~~~~~~-~~------~p~~----~~~~---~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~  250 (378)
                      -...... ..      .|..    ....   ...-..+..+|.....+..+.      .|..+|+.+.+....- ..+..
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~-~~~~~  311 (464)
T 3v7d_B          239 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDN------TLIVWDVAQMKCLYIL-SGHTD  311 (464)
T ss_dssp             CC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTS------CEEEEETTTTEEEEEE-CCCSS
T ss_pred             ccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCC------eEEEEECCCCcEEEEe-cCCCC
Confidence            1110000 00      0000    0000   001113344566555555443      6999999876553331 11111


Q ss_pred             CCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEE
Q 044435          251 EGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWY  328 (378)
Q Consensus       251 ~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~y  328 (378)
                          ... .+... +|...++...++.+.+|.+..      ...+..+.. .. ....+.+  ++..++....++.+..|
T Consensus       312 ----~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~------~~~~~~~~~h~~-~v~~~~~--~~~~l~s~s~dg~v~vw  377 (464)
T 3v7d_B          312 ----RIY-STIYDHERKRCISASMDTTIRIWDLEN------GELMYTLQGHTA-LVGLLRL--SDKFLVSAAADGSIRGW  377 (464)
T ss_dssp             ----CEE-EEEEETTTTEEEEEETTSCEEEEETTT------TEEEEEECCCSS-CEEEEEE--CSSEEEEEETTSEEEEE
T ss_pred             ----CEE-EEEEcCCCCEEEEEeCCCcEEEEECCC------CcEEEEEeCCCC-cEEEEEE--cCCEEEEEeCCCcEEEE
Confidence                111 33333 677777777777999998865      223444443 22 1333333  46767777778889999


Q ss_pred             ECCCCeEE
Q 044435          329 HLDMHRVE  336 (378)
Q Consensus       329 dl~~~~~~  336 (378)
                      |+++.+..
T Consensus       378 d~~~~~~~  385 (464)
T 3v7d_B          378 DANDYSRK  385 (464)
T ss_dssp             ETTTCCEE
T ss_pred             ECCCCcee
Confidence            99987643

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=87.99  E-value=12  Score=32.22  Aligned_cols=102  Identities=7%  Similarity=0.021  Sum_probs=59.6

Q ss_pred             EEEEEEcCC-ceee-----eecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-
Q 044435          229 LILAFDLNI-ETFY-----SMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-  299 (378)
Q Consensus       229 ~i~~fD~~~-~~~~-----~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-  299 (378)
                      .|..||+.+ ++..     .+..+....     -. .+... +|+ |+++......+.+|.++...  ..+.....+.. 
T Consensus       152 ~v~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~--g~~~~~~~~~~~  223 (343)
T 1ri6_A          152 RICLFTVSDDGHLVAQDPAEVTTVEGAG-----PR-HMVFHPNEQYAYCVNELNSSVDVWELKDPH--GNIECVQTLDMM  223 (343)
T ss_dssp             EEEEEEECTTSCEEEEEEEEEECSTTCC-----EE-EEEECTTSSEEEEEETTTTEEEEEESSCTT--SCCEEEEEEECS
T ss_pred             EEEEEEecCCCceeeecccccccCCCCC-----cc-eEEECCCCCEEEEEeCCCCEEEEEEecCCC--CcEEEEeecccc
Confidence            799999887 5554     233332211     11 23333 565 66665556699999987522  23444444432 


Q ss_pred             C-----CceeEEEEEEeCCCEEEEEe-CCCeEEEEECC--CCeEEEE
Q 044435          300 N-----GYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLD--MHRVESF  338 (378)
Q Consensus       300 ~-----~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~--~~~~~~v  338 (378)
                      .     .....-+.+.++|+.+++.. .++.+..||++  +++.+.+
T Consensus       224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~  270 (343)
T 1ri6_A          224 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKE  270 (343)
T ss_dssp             CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEE
T ss_pred             CccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEe
Confidence            1     11234577788898777665 45679999988  5666666

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=87.97  E-value=10  Score=37.84  Aligned_cols=107  Identities=15%  Similarity=0.243  Sum_probs=71.1

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-C--CeEEEEEcCCCcEEEEEeccCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-K--GCLSLLCKYSEPWDLWVMKEYG  286 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~--G~L~~~~~~~~~l~iW~l~~~~  286 (378)
                      +|.....+..++      .|..+|+.+++...+ .+..+..     .+..+... +  |.+.+....++.+.+|.++.  
T Consensus        20 dg~~latg~~dg------~I~vwd~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~--   86 (753)
T 3jro_A           20 YGKRLATCSSDK------TIKIFEVEGETHKLIDTLTGHEG-----PVWRVDWAHPKFGTILASCSYDGKVLIWKEEN--   86 (753)
T ss_dssp             SSCCEEEEETTT------EEEEEEEETTEEEEEEEECCCSS-----CEEEEEECCTTSCSEEEEEETTSCEEEEEEET--
T ss_pred             CCCeEEEEECCC------cEEEEecCCCCCccceeccCCcC-----ceEEEEecCCCCCCEEEEEeCCCeEEEEECCC--
Confidence            455555554442      788999886666555 3333221     11133332 3  77777777788999999886  


Q ss_pred             CCcceEEEEEecC-CCceeEEEEEEeC--CCEEEEEeCCCeEEEEECCCC
Q 044435          287 VKDSWSKLFTMNE-NGYRVIPLAFSSR--GDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~--g~~v~~~~~~~~~~~ydl~~~  333 (378)
                        ..|.....+.. .. ....+.+.++  |..++....++.+..||++++
T Consensus        87 --~~~~~~~~~~~h~~-~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~  133 (753)
T 3jro_A           87 --GRWSQIAVHAVHSA-SVNSVQWAPHEYGPLLLVASSDGKVSVVEFKEN  133 (753)
T ss_dssp             --TEEEEEEEECCCSS-CEEEEEECCGGGCSEEEEEETTSEEEEEECCSS
T ss_pred             --CcccccccccCCCC-CeEEEEECCCCCCCEEEEEeCCCcEEEEEeecC
Confidence              34777666655 22 2566777777  888888888888999999887

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=87.93  E-value=13  Score=32.42  Aligned_cols=107  Identities=9%  Similarity=0.010  Sum_probs=64.8

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      +|.....+..+      ..|..||+.+++-... .....      ... .+... +|++.+....++.+.+|-+..    
T Consensus       133 dg~~l~~g~~d------g~v~i~~~~~~~~~~~~~~~~~------~v~-~~~~spdg~~lasg~~dg~i~iwd~~~----  195 (321)
T 3ow8_A          133 DSQYLATGTHV------GKVNIFGVESGKKEYSLDTRGK------FIL-SIAYSPDGKYLASGAIDGIINIFDIAT----  195 (321)
T ss_dssp             TSSEEEEECTT------SEEEEEETTTCSEEEEEECSSS------CEE-EEEECTTSSEEEEEETTSCEEEEETTT----
T ss_pred             CCCEEEEEcCC------CcEEEEEcCCCceeEEecCCCc------eEE-EEEECCCCCEEEEEcCCCeEEEEECCC----
Confidence            45554444443      2688888876544322 21111      111 23333 677777777777999998764    


Q ss_pred             cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                        -..+..+.. .. ...-+++.++|..++....++.+..||+++.+...
T Consensus       196 --~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~  242 (321)
T 3ow8_A          196 --GKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAG  242 (321)
T ss_dssp             --TEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEE
T ss_pred             --CcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeE
Confidence              123444543 22 24567888889877777777779999998876543

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=87.91  E-value=13  Score=32.33  Aligned_cols=109  Identities=7%  Similarity=0.012  Sum_probs=64.5

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE----CCeEEEEEcCCCcEEEEEecc
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL----KGCLSLLCKYSEPWDLWVMKE  284 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~----~G~L~~~~~~~~~l~iW~l~~  284 (378)
                      -+|.+...+..++      .|..||+.+.+.... ..+..        +..+...    +|...++...++.+.+|.+..
T Consensus       178 ~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~~~~~--------v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~  243 (357)
T 3i2n_A          178 QEERVVCAGYDNG------DIKLFDLRNMALRWETNIKNG--------VCSLEFDRKDISMNKLVATSLEGKFHVFDMRT  243 (357)
T ss_dssp             -CCCEEEEEETTS------EEEEEETTTTEEEEEEECSSC--------EEEEEESCSSSSCCEEEEEESTTEEEEEEEEE
T ss_pred             CCCCEEEEEccCC------eEEEEECccCceeeecCCCCc--------eEEEEcCCCCCCCCEEEEECCCCeEEEEeCcC
Confidence            4666666665543      799999988775433 22211        1133443    577777777777999998876


Q ss_pred             CCCCcceEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEECCCC
Q 044435          285 YGVKDSWSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       285 ~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~ydl~~~  333 (378)
                      .......... ..........-+.+.++|. +++....++.+..||+++.
T Consensus       244 ~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  292 (357)
T 3i2n_A          244 QHPTKGFASV-SEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP  292 (357)
T ss_dssp             EETTTEEEEE-EEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred             CCcccceeee-ccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence            3322222211 2222111255677777777 5666677778999998754

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=87.60  E-value=16  Score=33.22  Aligned_cols=184  Identities=9%  Similarity=0.040  Sum_probs=98.5

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCc
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPY  196 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~  196 (378)
                      ..++++|..+++...+...+.       ....+.+.|... + ++....   ......+.+++..++..+.+...   +.
T Consensus       203 ~~i~~~d~~tg~~~~l~~~~~-------~~~~~~~spdg~-~-la~~~~---~~g~~~i~~~d~~~~~~~~l~~~---~~  267 (415)
T 2hqs_A          203 SALVIQTLANGAVRQVASFPR-------HNGAPAFSPDGS-K-LAFALS---KTGSLNLYVMDLASGQIRQVTDG---RS  267 (415)
T ss_dssp             CEEEEEETTTCCEEEEECCSS-------CEEEEEECTTSS-E-EEEEEC---TTSSCEEEEEETTTCCEEECCCC---SS
T ss_pred             cEEEEEECCCCcEEEeecCCC-------cccCEEEcCCCC-E-EEEEEe---cCCCceEEEEECCCCCEEeCcCC---CC
Confidence            479999999998876653321       233566666432 2 222221   12345688889888776655432   11


Q ss_pred             cccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcC
Q 044435          197 SWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKY  273 (378)
Q Consensus       197 ~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~  273 (378)
                        ...   .....-+|. |++....+..    ..|..+|+.+.+...+.....      ... .+... +|+ |++....
T Consensus       268 --~~~---~~~~spdg~~l~~~s~~~g~----~~i~~~d~~~~~~~~l~~~~~------~~~-~~~~spdG~~l~~~~~~  331 (415)
T 2hqs_A          268 --NNT---EPTWFPDSQNLAFTSDQAGR----PQVYKVNINGGAPQRITWEGS------QNQ-DADVSSDGKFMVMVSSN  331 (415)
T ss_dssp             --CEE---EEEECTTSSEEEEEECTTSS----CEEEEEETTSSCCEECCCSSS------EEE-EEEECTTSSEEEEEEEC
T ss_pred             --ccc---ceEECCCCCEEEEEECCCCC----cEEEEEECCCCCEEEEecCCC------ccc-CeEECCCCCEEEEEECc
Confidence              000   001112565 4444432221    368888998876554422211      111 22332 565 4444444


Q ss_pred             CC--cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCC---eEEEEECCCCeEEEEe
Q 044435          274 SE--PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSK---DHCWYHLDMHRVESFL  339 (378)
Q Consensus       274 ~~--~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~---~~~~ydl~~~~~~~v~  339 (378)
                      .+  .+.+|.++.    ....   .+.... ....+.+.++|..|++...+.   .++.+|++++..+.+.
T Consensus       332 ~g~~~i~~~d~~~----~~~~---~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          332 GGQQHIAKQDLAT----GGVQ---VLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             SSCEEEEEEETTT----CCEE---ECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECC
T ss_pred             CCceEEEEEECCC----CCEE---EecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEee
Confidence            33  555555543    1121   222211 245667888999777766544   6999999999888773

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=87.43  E-value=14  Score=32.41  Aligned_cols=197  Identities=7%  Similarity=0.081  Sum_probs=99.7

Q ss_pred             cceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC-c
Q 044435          107 NGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN-L  184 (378)
Q Consensus       107 ~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~-~  184 (378)
                      +|-+++ ...+..+.||+..++....+-....+    ......+.+.|.. .+-+ ...      ....+.+++..++ .
T Consensus        72 ~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h----~~~v~~v~~sp~~-~~l~-s~s------~D~~v~iwd~~~~~~  139 (345)
T 3fm0_A           72 CGNYLASASFDATTCIWKKNQDDFECVTTLEGH----ENEVKSVAWAPSG-NLLA-TCS------RDKSVWVWEVDEEDE  139 (345)
T ss_dssp             TSSEEEEEETTSCEEEEEECCC-EEEEEEECCC----SSCEEEEEECTTS-SEEE-EEE------TTSCEEEEEECTTSC
T ss_pred             CCCEEEEEECCCcEEEEEccCCCeEEEEEccCC----CCCceEEEEeCCC-CEEE-EEE------CCCeEEEEECCCCCC
Confidence            444333 34566678888776654322221111    1224456666643 3222 222      1235777777653 3


Q ss_pred             EEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEE
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~  261 (378)
                      +..+...   ..  ..  ..-..+.+  +|.+...+..+.      .|..||..+.++..+ .+..+..     .+..+.
T Consensus       140 ~~~~~~~---~~--h~--~~v~~~~~~p~~~~l~s~s~d~------~i~~w~~~~~~~~~~~~~~~h~~-----~v~~l~  201 (345)
T 3fm0_A          140 YECVSVL---NS--HT--QDVKHVVWHPSQELLASASYDD------TVKLYREEEDDWVCCATLEGHES-----TVWSLA  201 (345)
T ss_dssp             EEEEEEE---CC--CC--SCEEEEEECSSSSCEEEEETTS------CEEEEEEETTEEEEEEEECCCSS-----CEEEEE
T ss_pred             eEEEEEe---cC--cC--CCeEEEEECCCCCEEEEEeCCC------cEEEEEecCCCEEEEEEecCCCC-----ceEEEE
Confidence            3322211   00  00  00011111  455444444432      688888887776543 3332221     111333


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCC---------CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEEC
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYG---------VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHL  330 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~---------~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl  330 (378)
                      .. +|++.+....++.+.||.....+         ....|..+..+.. ......-+++.+++..++....++.+.++|.
T Consensus       202 ~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~  281 (345)
T 3fm0_A          202 FDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQE  281 (345)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEe
Confidence            33 67777777777799999864221         1235776666654 3323556677777776777777777888876


Q ss_pred             CCC
Q 044435          331 DMH  333 (378)
Q Consensus       331 ~~~  333 (378)
                      +++
T Consensus       282 ~~~  284 (345)
T 3fm0_A          282 DPN  284 (345)
T ss_dssp             CTT
T ss_pred             CCC
Confidence            654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=87.32  E-value=13  Score=31.73  Aligned_cols=198  Identities=9%  Similarity=-0.034  Sum_probs=101.8

Q ss_pred             eEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEec
Q 044435          109 LLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRI  188 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~  188 (378)
                      |+........+.++||.++ ...+....       ....++.+++...   ++...     .....+.+|+..++..+.+
T Consensus        42 l~~~~~~~~~i~~~~~~~~-~~~~~~~~-------~~~~~l~~~~dg~---l~v~~-----~~~~~i~~~d~~~g~~~~~  105 (296)
T 3e5z_A           42 VIFSDVRQNRTWAWSDDGQ-LSPEMHPS-------HHQNGHCLNKQGH---LIACS-----HGLRRLERQREPGGEWESI  105 (296)
T ss_dssp             EEEEEGGGTEEEEEETTSC-EEEEESSC-------SSEEEEEECTTCC---EEEEE-----TTTTEEEEECSTTCCEEEE
T ss_pred             EEEEeCCCCEEEEEECCCC-eEEEECCC-------CCcceeeECCCCc---EEEEe-----cCCCeEEEEcCCCCcEEEE
Confidence            3444445667899999988 55554322       1234677776443   22211     1124688888888877655


Q ss_pred             CcccCCCccccccccCCccee--eCCeEEEEee---c-C-------CCcccceEEEEEEcCCceeeeecCCCCCCCCCCc
Q 044435          189 KNIKNFPYSWADHSYGGNGAF--VNGALHWLAN---Q-N-------QDEMINDLILAFDLNIETFYSMPMPGFGNEGGGG  255 (378)
Q Consensus       189 ~~~~~~p~~~~~~~~~~~~v~--~~G~lyw~~~---~-~-------~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~  255 (378)
                      ...   ..  .........+.  -+|.+|+...   . .       ........|..+|.. ++...+.-.  ..    .
T Consensus       106 ~~~---~~--~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~----~  173 (296)
T 3e5z_A          106 ADS---FE--GKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRD--RV----K  173 (296)
T ss_dssp             ECE---ET--TEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECC--CS----S
T ss_pred             eec---cC--CCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecC--CC----C
Confidence            322   11  11111112233  3688777521   0 0       000011378999987 555544211  11    0


Q ss_pred             ccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcce-EEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          256 ELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSW-SKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       256 ~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W-~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      -. .++.. +|++.++......+.+|.++..   ... .....+........-+++.++|. +++.. ...+..||++++
T Consensus       174 ~~-gi~~s~dg~~lv~~~~~~~i~~~~~~~~---g~~~~~~~~~~~~~~~p~~i~~d~~G~-l~v~~-~~~v~~~~~~g~  247 (296)
T 3e5z_A          174 PN-GLAFLPSGNLLVSDTGDNATHRYCLNAR---GETEYQGVHFTVEPGKTDGLRVDAGGL-IWASA-GDGVHVLTPDGD  247 (296)
T ss_dssp             EE-EEEECTTSCEEEEETTTTEEEEEEECSS---SCEEEEEEEECCSSSCCCSEEEBTTSC-EEEEE-TTEEEEECTTSC
T ss_pred             Cc-cEEECCCCCEEEEeCCCCeEEEEEECCC---CcCcCCCeEeeCCCCCCCeEEECCCCC-EEEEc-CCeEEEECCCCC
Confidence            01 33443 6766554444457777777632   234 22233321111123466777888 66666 566999999988


Q ss_pred             eEEEEeE
Q 044435          334 RVESFLV  340 (378)
Q Consensus       334 ~~~~v~~  340 (378)
                      ..+.+..
T Consensus       248 ~~~~~~~  254 (296)
T 3e5z_A          248 ELGRVLT  254 (296)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            7777643

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=87.31  E-value=14  Score=32.28  Aligned_cols=204  Identities=10%  Similarity=0.026  Sum_probs=104.1

Q ss_pred             EEeeeccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecC-CCCeEEEEEEEecCCCcceEEEEEE
Q 044435          101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVG-SDDYKLVRIHVFKSPVYHIEATVYG  179 (378)
Q Consensus       101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~-~~~ykvv~~~~~~~~~~~~~~~vys  179 (378)
                      .+.++.+|.+.+.+......++|..+++...--....     ......+.+++. .+.+-+.+ .      ....+.+|+
T Consensus        88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~~~l~s~-s------~dg~i~~wd  155 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDS-----ANEIIYMYGHNEVNTEYFIWA-D------NRGTIGFQS  155 (343)
T ss_dssp             EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCC-----SSCEEEEECCC---CCEEEEE-E------TTCCEEEEE
T ss_pred             eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCC-----CCCEEEEEcCCCCCCCEEEEE-e------CCCcEEEEE
Confidence            3566678888877777778888888877332211111     112445666662 33333322 2      134688888


Q ss_pred             cCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC-CCCCCCCcccc
Q 044435          180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG-FGNEGGGGELS  258 (378)
Q Consensus       180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~-~~~~~~~~~~~  258 (378)
                      .+++.-......   ..  .. ....-...-+|.+...+..++      .|..+|+.+.+-....+.. +..     .+.
T Consensus       156 ~~~~~~~~~~~~---~~--~~-~i~~~~~~pdg~~lasg~~dg------~i~iwd~~~~~~~~~~~~~~h~~-----~v~  218 (343)
T 3lrv_A          156 YEDDSQYIVHSA---KS--DV-EYSSGVLHKDSLLLALYSPDG------ILDVYNLSSPDQASSRFPVDEEA-----KIK  218 (343)
T ss_dssp             SSSSCEEEEECC---CS--SC-CCCEEEECTTSCEEEEECTTS------CEEEEESSCTTSCCEECCCCTTS-----CEE
T ss_pred             CCCCcEEEEEec---CC--CC-ceEEEEECCCCCEEEEEcCCC------EEEEEECCCCCCCccEEeccCCC-----CEE
Confidence            877654322111   10  00 001111222577666655543      7999999877643122222 111     111


Q ss_pred             eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEE--EEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEEC--CC
Q 044435          259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKL--FTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHL--DM  332 (378)
Q Consensus       259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~--~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl--~~  332 (378)
                      .+... +|...+... ++.+.||-+............  +..+.   ....+++.++|..++.... +..+..|+.  ..
T Consensus       219 ~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~  294 (343)
T 3lrv_A          219 EVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKT---GTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKT  294 (343)
T ss_dssp             EEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTT
T ss_pred             EEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccc---cceEEEECCCCCEEEEecCCCCcEEEEEEcccc
Confidence            33433 566555555 449999988763221111100  00110   0124777888997777665 666777766  55


Q ss_pred             CeEEE
Q 044435          333 HRVES  337 (378)
Q Consensus       333 ~~~~~  337 (378)
                      +.|+.
T Consensus       295 ~~~~~  299 (343)
T 3lrv_A          295 KNWTK  299 (343)
T ss_dssp             CSEEE
T ss_pred             cceEe
Confidence            66776

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=87.30  E-value=12  Score=33.67  Aligned_cols=110  Identities=14%  Similarity=0.088  Sum_probs=68.0

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.+...+..+.      .|..+|+.+++..... ..+..     .+..+... +|.+.+....++.+.+|.+.....  
T Consensus       108 ~~~~l~~~~~dg------~i~iwd~~~~~~~~~~-~~h~~-----~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~--  173 (420)
T 3vl1_A          108 QMRRFILGTTEG------DIKVLDSNFNLQREID-QAHVS-----EITKLKFFPSGEALISSSQDMQLKIWSVKDGSN--  173 (420)
T ss_dssp             SSCEEEEEETTS------CEEEECTTSCEEEEET-TSSSS-----CEEEEEECTTSSEEEEEETTSEEEEEETTTCCC--
T ss_pred             CCCEEEEEECCC------CEEEEeCCCcceeeec-ccccC-----ccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC--
Confidence            566655555442      6889998877664442 11111     11033333 677777777777999998875321  


Q ss_pred             ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                          ...+........-+.+.++|..++....++.+..||+++++....
T Consensus       174 ----~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  218 (420)
T 3vl1_A          174 ----PRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHT  218 (420)
T ss_dssp             ----CEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ----ceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEE
Confidence                122222111255677888899787777788899999998875544

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=87.16  E-value=26  Score=35.00  Aligned_cols=198  Identities=12%  Similarity=0.037  Sum_probs=100.6

Q ss_pred             cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      +|-|.+......++.+||.|+++..++.....    ......+..|... .   +.+..      ...+..|+..++.|+
T Consensus       417 ~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~----~~~v~~i~~d~~g-~---lwigt------~~Gl~~~~~~~~~~~  482 (781)
T 3v9f_A          417 EGNLWFGTYLGNISYYNTRLKKFQIIELEKNE----LLDVRVFYEDKNK-K---IWIGT------HAGVFVIDLASKKVI  482 (781)
T ss_dssp             TSCEEEEETTEEEEEECSSSCEEEECCSTTTC----CCCEEEEEECTTS-E---EEEEE------TTEEEEEESSSSSCC
T ss_pred             CCCEEEEeccCCEEEEcCCCCcEEEeccCCCC----CCeEEEEEECCCC-C---EEEEE------CCceEEEeCCCCeEE
Confidence            45454444445788889988888777543100    1123344444321 1   22222      135778888888887


Q ss_pred             ecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-E
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-L  263 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~  263 (378)
                      .....   +.. ......-.+++.  +|. .|++..+.      .+..||..++++..+..+......  ... .+.+ .
T Consensus       483 ~~~~~---~~~-~~~~~~i~~i~~d~~g~-lWigt~~~------Gl~~~~~~~~~~~~~~~~~~l~~~--~i~-~i~~d~  548 (781)
T 3v9f_A          483 HHYDT---SNS-QLLENFVRSIAQDSEGR-FWIGTFGG------GVGIYTPDMQLVRKFNQYEGFCSN--TIN-QIYRSS  548 (781)
T ss_dssp             EEECT---TTS-SCSCSCEEEEEECTTCC-EEEEESSS------CEEEECTTCCEEEEECTTTTCSCS--CEE-EEEECT
T ss_pred             ecccC---ccc-ccccceeEEEEEcCCCC-EEEEEcCC------CEEEEeCCCCeEEEccCCCCCCCC--eeE-EEEECC
Confidence            65432   100 000011112333  354 46665532      588999999999887544333211  111 3444 3


Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-CCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-ENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~  339 (378)
                      +|.|.+.+. .+-  +..++..  ...+.....-+ +......-+....+|. +.+....+ +..||+++++++...
T Consensus       549 ~g~lWi~T~-~Gl--v~~~d~~--~~~~~~~~~~~gl~~~~i~~i~~d~~g~-lW~~t~~G-l~~~~~~~~~~~~~~  618 (781)
T 3v9f_A          549 KGQMWLATG-EGL--VCFPSAR--NFDYQVFQRKEGLPNTHIRAISEDKNGN-IWASTNTG-ISCYITSKKCFYTYD  618 (781)
T ss_dssp             TSCEEEEET-TEE--EEESCTT--TCCCEEECGGGTCSCCCCCEEEECSSSC-EEEECSSC-EEEEETTTTEEEEEC
T ss_pred             CCCEEEEEC-CCc--eEEECCC--CCcEEEccccCCCCCceEEEEEECCCCC-EEEEcCCc-eEEEECCCCceEEec
Confidence            677777664 211  1333321  12233221111 1111123344444676 77776544 999999999988874

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=86.73  E-value=18  Score=32.77  Aligned_cols=189  Identities=13%  Similarity=0.076  Sum_probs=93.1

Q ss_pred             cceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435          107 NGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW  185 (378)
Q Consensus       107 ~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W  185 (378)
                      +|-+++ ...+..+.|||..+++....-...      ......+.+++.. .+ ++...      ....+.+|+..++.-
T Consensus       119 ~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h------~~~V~~v~~~~~~-~~-l~sgs------~D~~i~iwd~~~~~~  184 (410)
T 1vyh_C          119 VFSVMVSASEDATIKVWDYETGDFERTLKGH------TDSVQDISFDHSG-KL-LASCS------ADMTIKLWDFQGFEC  184 (410)
T ss_dssp             SSSEEEEEESSSCEEEEETTTCCCCEEECCC------SSCEEEEEECTTS-SE-EEEEE------TTSCCCEEETTSSCE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEEecc------CCcEEEEEEcCCC-CE-EEEEe------CCCeEEEEeCCCCce
Confidence            444433 346678999999988754321111      1123455665543 32 22222      123466777655422


Q ss_pred             EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-
Q 044435          186 RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-  262 (378)
Q Consensus       186 ~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-  262 (378)
                      ..  ..   ..  ..  ..-.++.+  +|.....+..+      ..|..+|+.++..... +..+..    ... .+.. 
T Consensus       185 ~~--~~---~~--h~--~~V~~v~~~p~~~~l~s~s~D------~~i~~wd~~~~~~~~~-~~~h~~----~v~-~~~~~  243 (410)
T 1vyh_C          185 IR--TM---HG--HD--HNVSSVSIMPNGDHIVSASRD------KTIKMWEVQTGYCVKT-FTGHRE----WVR-MVRPN  243 (410)
T ss_dssp             EE--CC---CC--CS--SCEEEEEECSSSSEEEEEETT------SEEEEEETTTCCEEEE-EECCSS----CEE-EEEEC
T ss_pred             eE--EE---cC--CC--CCEEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEE-EeCCCc----cEE-EEEEC
Confidence            11  11   00  00  00012222  45555545444      2799999987654222 111111    111 2222 


Q ss_pred             ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEe--------------------CCCEEEEEeCC
Q 044435          263 LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSS--------------------RGDKVLFQKNS  322 (378)
Q Consensus       263 ~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~--------------------~g~~v~~~~~~  322 (378)
                      .+|.+.+....++.+.+|.+....      ....+.........+.+.+                    +|..++....+
T Consensus       244 ~~g~~l~s~s~D~~v~vwd~~~~~------~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D  317 (410)
T 1vyh_C          244 QDGTLIASCSNDQTVRVWVVATKE------CKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRD  317 (410)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTCC------EEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETT
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCc------eeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCC
Confidence            267877777777899999876421      1122222111122333333                    25666667777


Q ss_pred             CeEEEEECCCCeEE
Q 044435          323 KDHCWYHLDMHRVE  336 (378)
Q Consensus       323 ~~~~~ydl~~~~~~  336 (378)
                      +.+..||+++++..
T Consensus       318 ~~i~iwd~~~~~~~  331 (410)
T 1vyh_C          318 KTIKMWDVSTGMCL  331 (410)
T ss_dssp             SEEEEEETTTTEEE
T ss_pred             CeEEEEECCCCceE
Confidence            78999999887643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=86.69  E-value=15  Score=31.90  Aligned_cols=199  Identities=10%  Similarity=0.018  Sum_probs=96.5

Q ss_pred             eccce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|- |+....+..+.|||..+++...+....       .....+.+.+..+.-.++...      ....+.+|+.+++
T Consensus        95 ~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~-------~~v~~~~~~~~~~~~~l~~~~------~dg~i~vwd~~~~  161 (368)
T 3mmy_A           95 SDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHD-------APVKTIHWIKAPNYSCVMTGS------WDKTLKFWDTRSS  161 (368)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-------SCEEEEEEEECSSCEEEEEEE------TTSEEEEECSSCS
T ss_pred             CcCCCEEEEEcCCCcEEEEEcCCCCceeecccc-------CceEEEEEEeCCCCCEEEEcc------CCCcEEEEECCCC
Confidence            33554 444446677899999998877643211       123345553332222233322      1346888887765


Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee--eeecCCCCCCCCCCcccceEE
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF--YSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~--~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      .-..  ..   ..  .   .....+...+.....+..+      ..+..||+.+..-  ..+..+....    ..  .+.
T Consensus       162 ~~~~--~~---~~--~---~~~~~~~~~~~~~~~~~~~------~~i~~~~~~~~~~~~~~~~~~~~~~----~~--~~~  219 (368)
T 3mmy_A          162 NPMM--VL---QL--P---ERCYCADVIYPMAVVATAE------RGLIVYQLENQPSEFRRIESPLKHQ----HR--CVA  219 (368)
T ss_dssp             SCSE--EE---EC--S---SCEEEEEEETTEEEEEEGG------GCEEEEECSSSCEEEEECCCSCSSC----EE--EEE
T ss_pred             cEEE--EE---ec--C---CCceEEEecCCeeEEEeCC------CcEEEEEeccccchhhhccccccCC----Cc--eEE
Confidence            3111  01   00  0   0011222223333444333      2588888876543  3332222211    11  112


Q ss_pred             EE-CC----eEEEEEcCCCcEEEEEeccCCC-CcceEEEE-Eec-CC--C----ceeEEEEEEeCCCEEEEEeCCCeEEE
Q 044435          262 VL-KG----CLSLLCKYSEPWDLWVMKEYGV-KDSWSKLF-TMN-EN--G----YRVIPLAFSSRGDKVLFQKNSKDHCW  327 (378)
Q Consensus       262 ~~-~G----~L~~~~~~~~~l~iW~l~~~~~-~~~W~~~~-~i~-~~--~----~~~~~~~~~~~g~~v~~~~~~~~~~~  327 (378)
                      .. ++    ...++...++.+.+|.++.... ........ .-. ..  .    ....-+++.++|..++....++.+..
T Consensus       220 ~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~i  299 (368)
T 3mmy_A          220 IFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSF  299 (368)
T ss_dssp             EEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEE
T ss_pred             EcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEE
Confidence            11 21    2244555556999999876321 11111110 000 00  0    12555677788887777777888999


Q ss_pred             EECCCCeEEEE
Q 044435          328 YHLDMHRVESF  338 (378)
Q Consensus       328 ydl~~~~~~~v  338 (378)
                      ||+++++....
T Consensus       300 wd~~~~~~~~~  310 (368)
T 3mmy_A          300 WDKDARTKLKT  310 (368)
T ss_dssp             EETTTTEEEEE
T ss_pred             EECCCCcEEEE
Confidence            99998765433

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=86.38  E-value=20  Score=32.87  Aligned_cols=65  Identities=5%  Similarity=-0.134  Sum_probs=44.4

Q ss_pred             CeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          265 GCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       265 G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      |++.+....++.+.||.+....    -  +..+.. ......-+++. +|..++....++.+..||+++++..
T Consensus       210 ~~~l~s~~~d~~i~vwd~~~~~----~--~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~  275 (450)
T 2vdu_B          210 HQFIITSDRDEHIKISHYPQCF----I--VDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNL  275 (450)
T ss_dssp             CEEEEEEETTSCEEEEEESCTT----C--EEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEE
T ss_pred             CcEEEEEcCCCcEEEEECCCCc----e--eeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEe
Confidence            7777777777799999987521    1  222121 21225567777 8987888887888999999988743

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=86.36  E-value=16  Score=34.82  Aligned_cols=187  Identities=9%  Similarity=-0.026  Sum_probs=0.0

Q ss_pred             cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      +++++.........++|..|++...|...+      .   ..+.++|.+...-...-..    .....+.+++..++.++
T Consensus       122 ~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~------~---~~~~~spDG~~la~~~~~~----~~~~~i~~~d~~~g~~~  188 (582)
T 3o4h_A          122 EAVVFTGATEDRVALYALDGGGLRELARLP------G---FGFVSDIRGDLIAGLGFFG----GGRVSLFTSNLSSGGLR  188 (582)
T ss_dssp             SCEEEEEECSSCEEEEEEETTEEEEEEEES------S---CEEEEEEETTEEEEEEEEE----TTEEEEEEEETTTCCCE
T ss_pred             CeEEEEecCCCCceEEEccCCcEEEeecCC------C---ceEEECCCCCEEEEEEEcC----CCCeEEEEEcCCCCCce


Q ss_pred             ecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCC--------cccc
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGG--------GELS  258 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~--------~~~~  258 (378)
                      .+...   +.     ........=||+..+....+...    .|..+|+.+.+...+.-.........        +.. 
T Consensus       189 ~l~~~---~~-----~~~~~~~SpDG~~l~~~~~~~~~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-  255 (582)
T 3o4h_A          189 VFDSG---EG-----SFSSASISPGMKVTAGLETAREA----RLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLP-  255 (582)
T ss_dssp             EECCS---SC-----EEEEEEECTTSCEEEEEECSSCE----EEEEECTTTCCEEECCCSCSHHHHHCCSEEEEEEECT-
T ss_pred             EeecC---CC-----ccccceECCCCCEEEEccCCCee----EEEEEcCCCCcEEEccCCCcChhhhhhccccceeEcC-


Q ss_pred             eEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCe---EEEEECCCCe
Q 044435          259 GVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKD---HCWYHLDMHR  334 (378)
Q Consensus       259 ~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~---~~~ydl~~~~  334 (378)
                           +|++++....++++.||.+      .....    .. ..  ...+.+. +|..++....+..   ++.+|+++ +
T Consensus       256 -----dg~~~~~~~~~g~~~l~~~------g~~~~----~~~~~--v~~~~~s-dg~~l~~~s~~~~p~~l~~~d~~~-~  316 (582)
T 3o4h_A          256 -----DGRLAVVARREGRSAVFID------GERVE----APQGN--HGRVVLW-RGKLVTSHTSLSTPPRIVSLPSGE-P  316 (582)
T ss_dssp             -----TSCEEEEEEETTEEEEEET------TEEEC----CCSSE--EEEEEEE-TTEEEEEEEETTEEEEEEEETTCC-E
T ss_pred             -----CCcEEEEEEcCCcEEEEEE------CCeec----cCCCc--eEEEEec-CCEEEEEEcCCCCCCeEEEEcCCC-c


Q ss_pred             EEEE
Q 044435          335 VESF  338 (378)
Q Consensus       335 ~~~v  338 (378)
                      .+.+
T Consensus       317 ~~~l  320 (582)
T 3o4h_A          317 LLEG  320 (582)
T ss_dssp             EECC
T ss_pred             eEEE

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=86.33  E-value=18  Score=32.44  Aligned_cols=103  Identities=12%  Similarity=0.078  Sum_probs=60.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      +|.....+..+      ..|..+|+.+.+.... .....       .. .+...  +|++.+....++.+.+|.+.... 
T Consensus       176 ~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~~~~~-------v~-~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-  240 (393)
T 1erj_A          176 SGDKLVSGSGD------RTVRIWDLRTGQCSLTLSIEDG-------VT-TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-  240 (393)
T ss_dssp             TSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC-------EE-EEEECSTTCCEEEEEETTSCEEEEETTTCC-
T ss_pred             CCCEEEEecCC------CcEEEEECCCCeeEEEEEcCCC-------cE-EEEEECCCCCEEEEEcCCCcEEEEECCCCc-
Confidence            45544444443      2789999988765433 32211       11 33333  67887777777899999876421 


Q ss_pred             CcceEEEEEecC-------CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          288 KDSWSKLFTMNE-------NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       288 ~~~W~~~~~i~~-------~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                           .+..+..       ......-+.+.++|..++....++.+..||+++.
T Consensus       241 -----~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          241 -----LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             -----EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             -----EEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence                 1222211       1122556777888997777777888999998764

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=86.32  E-value=20  Score=32.78  Aligned_cols=200  Identities=8%  Similarity=-0.085  Sum_probs=101.6

Q ss_pred             eccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      ..+|-|.+.+ ....+.++|+.+++...+.....     .  .. +.+++..+.  ++. ..  . .....+.+++..++
T Consensus       139 d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-----~--~~-ia~~~~g~~--l~~-~d--~-~~~~~I~~~d~~~~  204 (409)
T 3hrp_A          139 VGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-----G--GK-PAVTKDKQR--VYS-IG--W-EGTHTVYVYMKASG  204 (409)
T ss_dssp             CSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-----B--CB-CEECTTSSE--EEE-EB--S-STTCEEEEEEGGGT
T ss_pred             eCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-----C--Cc-eeEecCCCc--EEE-Ee--c-CCCceEEEEEcCCC
Confidence            3567666665 45678999999988776643321     1  11 555655431  211 11  1 11126777776543


Q ss_pred             -cEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccc
Q 044435          184 -LWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELS  258 (378)
Q Consensus       184 -~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~  258 (378)
                       ..+.+...   +.  .. .....++.+   +|.||+ ....      ..|..||+.+.....+ ..+......  ..+.
T Consensus       205 ~~~~~~g~~---~~--~~-~~~p~~iav~p~~g~lyv-~d~~------~~I~~~d~~~~~~~~~~~~~~~g~~~--~~P~  269 (409)
T 3hrp_A          205 WAPTRIGQL---GS--TF-SGKIGAVALDETEEWLYF-VDSN------KNFGRFNVKTQEVTLIKQLELSGSLG--TNPG  269 (409)
T ss_dssp             TCEEEEEEC---CT--TS-CSCCCBCEECTTSSEEEE-ECTT------CEEEEEETTTCCEEEEEECCCCSCCC--CSSC
T ss_pred             ceeEEeeec---cc--hh-cCCcEEEEEeCCCCeEEE-EECC------CcEEEEECCCCCEEEEecccccCCCC--CCcc
Confidence             23333111   00  00 011123333   689999 3332      3799999987766555 111111110  1100


Q ss_pred             -eEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEec-C-----------CCceeEEEEEEeCCCEEEEEeC--
Q 044435          259 -GVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMN-E-----------NGYRVIPLAFSSRGDKVLFQKN--  321 (378)
Q Consensus       259 -~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~-~-----------~~~~~~~~~~~~~g~~v~~~~~--  321 (378)
                       .++..  +|.|+++.....++..|  +..+   .-..+..-. .           .+....-+++.++|. +++...  
T Consensus       270 ~~ia~~p~~g~lyv~d~~~~~I~~~--~~~g---~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~-lyvad~~~  343 (409)
T 3hrp_A          270 PYLIYYFVDSNFYMSDQNLSSVYKI--TPDG---ECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGN-FYIVDGFK  343 (409)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEE--CTTC---CEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCC-EEEEETTT
T ss_pred             ccEEEeCCCCEEEEEeCCCCEEEEE--ecCC---CEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCC-EEEEeCCC
Confidence             34444  58999887655554444  3322   111111111 0           122244466667888 666554  


Q ss_pred             CCeEEEEECCCCeEEEEe
Q 044435          322 SKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       322 ~~~~~~ydl~~~~~~~v~  339 (378)
                      ...+..+|+.++++..+.
T Consensus       344 ~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          344 GYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEECCCCEEEEEe
Confidence            456999998888887774

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=86.09  E-value=19  Score=32.36  Aligned_cols=186  Identities=7%  Similarity=0.000  Sum_probs=97.1

Q ss_pred             cce-EEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcE
Q 044435          107 NGL-LALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLW  185 (378)
Q Consensus       107 ~GL-l~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W  185 (378)
                      +|- |+....+..+.|||..+++....-...      ......+.+++   . .++...      ....+.+|+.++..-
T Consensus       145 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~---~-~l~~~~------~dg~i~i~d~~~~~~  208 (401)
T 4aez_A          145 DGSFLSVGLGNGLVDIYDVESQTKLRTMAGH------QARVGCLSWNR---H-VLSSGS------RSGAIHHHDVRIANH  208 (401)
T ss_dssp             TSSEEEEEETTSCEEEEETTTCCEEEEECCC------SSCEEEEEEET---T-EEEEEE------TTSEEEEEETTSSSC
T ss_pred             CCCEEEEECCCCeEEEEECcCCeEEEEecCC------CCceEEEEECC---C-EEEEEc------CCCCEEEEecccCcc
Confidence            443 334445667888888877654322211      11233455543   2 222222      234677888764221


Q ss_pred             --EecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435          186 --RRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       186 --~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~  261 (378)
                        ......   ..  .     -.++.+  +|.....+..++      .|..+|+.+.+....-.+....     -. .+.
T Consensus       209 ~~~~~~~~---~~--~-----v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~~~~~~~~~~~-----v~-~~~  266 (401)
T 4aez_A          209 QIGTLQGH---SS--E-----VCGLAWRSDGLQLASGGNDN------VVQIWDARSSIPKFTKTNHNAA-----VK-AVA  266 (401)
T ss_dssp             EEEEEECC---SS--C-----EEEEEECTTSSEEEEEETTS------CEEEEETTCSSEEEEECCCSSC-----CC-EEE
T ss_pred             eeeEEcCC---CC--C-----eeEEEEcCCCCEEEEEeCCC------eEEEccCCCCCccEEecCCcce-----EE-EEE
Confidence              111110   00  0     011222  566666665543      6999999875543321111111     11 334


Q ss_pred             EE--CCeEEEEEc--CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEe--CCCeEEEEECCCCe
Q 044435          262 VL--KGCLSLLCK--YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK--NSKDHCWYHLDMHR  334 (378)
Q Consensus       262 ~~--~G~L~~~~~--~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~--~~~~~~~ydl~~~~  334 (378)
                      ..  ++.+.+...  .++.+.+|-+...      .....+.. ..  ..-+.+.++|..++...  .++.+..||+.+.+
T Consensus       267 ~~p~~~~ll~~~~gs~d~~i~i~d~~~~------~~~~~~~~~~~--v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~  338 (401)
T 4aez_A          267 WCPWQSNLLATGGGTMDKQIHFWNAATG------ARVNTVDAGSQ--VTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSG  338 (401)
T ss_dssp             ECTTSTTEEEEECCTTTCEEEEEETTTC------CEEEEEECSSC--EEEEEECSSSSEEEEEECTTTCEEEEEEEETTE
T ss_pred             ECCCCCCEEEEecCCCCCEEEEEECCCC------CEEEEEeCCCc--EEEEEECCCCCeEEEEeecCCCcEEEEecCCcc
Confidence            43  235555554  3559999988752      22333333 22  55677788898777754  46779999999987


Q ss_pred             EEEE
Q 044435          335 VESF  338 (378)
Q Consensus       335 ~~~v  338 (378)
                      ...+
T Consensus       339 ~~~~  342 (401)
T 4aez_A          339 LTKQ  342 (401)
T ss_dssp             EEEE
T ss_pred             ceeE
Confidence            7666

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=85.90  E-value=16  Score=31.52  Aligned_cols=105  Identities=10%  Similarity=0.031  Sum_probs=59.4

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.+||.....      ..|..||...+.-..+..+..        ...++.. +|+|+++........|+.++...  .
T Consensus        42 ~g~lyv~d~~~------~~I~~~d~~g~~~~~~~~~~~--------p~gia~~~dG~l~vad~~~~~~~v~~~d~~~--g  105 (306)
T 2p4o_A           42 DGTIFVTNHEV------GEIVSITPDGNQQIHATVEGK--------VSGLAFTSNGDLVATGWNADSIPVVSLVKSD--G  105 (306)
T ss_dssp             TSCEEEEETTT------TEEEEECTTCCEEEEEECSSE--------EEEEEECTTSCEEEEEECTTSCEEEEEECTT--S
T ss_pred             CCCEEEEeCCC------CeEEEECCCCceEEEEeCCCC--------ceeEEEcCCCcEEEEeccCCcceEEEEcCCC--C
Confidence            68899987544      279999998765444455421        1134443 68888877544444566665321  2


Q ss_pred             ceEEEEEecC-CCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCe
Q 044435          290 SWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHR  334 (378)
Q Consensus       290 ~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~  334 (378)
                      +...+..++. ..  ..-+++..++. +++.. ....++.+|+.+++
T Consensus       106 ~~~~~~~~~~~~~--~~g~~~~~~~~-~~v~d~~~g~i~~~d~~~~~  149 (306)
T 2p4o_A          106 TVETLLTLPDAIF--LNGITPLSDTQ-YLTADSYRGAIWLIDVVQPS  149 (306)
T ss_dssp             CEEEEEECTTCSC--EEEEEESSSSE-EEEEETTTTEEEEEETTTTE
T ss_pred             eEEEEEeCCCccc--cCcccccCCCc-EEEEECCCCeEEEEeCCCCc
Confidence            3444444433 32  22233333343 55554 35679999998764

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=85.73  E-value=6.2  Score=34.35  Aligned_cols=108  Identities=16%  Similarity=0.088  Sum_probs=61.7

Q ss_pred             eeCCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccC
Q 044435          209 FVNGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEY  285 (378)
Q Consensus       209 ~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~  285 (378)
                      ..++.+|......      ..|..+|+.+.+.. .++++.....   .   .++.. +|+ +++....+..+.+|-++..
T Consensus         8 ~~~~~~~v~~~~~------~~v~~~d~~~~~~~~~~~~~~~~~~---~---~~~~s~dg~~~~v~~~~~~~i~~~d~~t~   75 (349)
T 1jmx_B            8 KAGHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGP---G---TAMMAPDNRTAYVLNNHYGDIYGIDLDTC   75 (349)
T ss_dssp             CTTCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSS---C---EEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred             cCCCEEEEEeCCC------CeEEEEECCCCcEEEEEecCCCCCC---c---eeEECCCCCEEEEEeCCCCcEEEEeCCCC
Confidence            3456676666554      37999999887664 4466541111   1   33443 565 5565544557777766531


Q ss_pred             CCCcceEEEEEecC-C-----CceeEEEEEEeCCCEEEEEeCC------------CeEEEEECCCCe
Q 044435          286 GVKDSWSKLFTMNE-N-----GYRVIPLAFSSRGDKVLFQKNS------------KDHCWYHLDMHR  334 (378)
Q Consensus       286 ~~~~~W~~~~~i~~-~-----~~~~~~~~~~~~g~~v~~~~~~------------~~~~~ydl~~~~  334 (378)
                            .....+.. .     ......+.+.++|+.+++...+            ..+..||+++++
T Consensus        76 ------~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~  136 (349)
T 1jmx_B           76 ------KNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  136 (349)
T ss_dssp             ------EEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ------cEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence                  12223332 1     1112346677889877776633            569999998744

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=85.63  E-value=11  Score=32.67  Aligned_cols=111  Identities=14%  Similarity=0.168  Sum_probs=61.9

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCC--cEEEEEeccCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSE--PWDLWVMKEYGV  287 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~--~l~iW~l~~~~~  287 (378)
                      +|.+||......      .|..||+.++++..+..+...      .+..++.. +|+|++......  .-.|+.++..+.
T Consensus        55 ~g~l~~~~~~~~------~i~~~d~~~~~~~~~~~~~~~------~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~  122 (333)
T 2dg1_A           55 QGQLFLLDVFEG------NIFKINPETKEIKRPFVSHKA------NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  122 (333)
T ss_dssp             TSCEEEEETTTC------EEEEECTTTCCEEEEEECSSS------SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCCEEEEECCCC------EEEEEeCCCCcEEEEeeCCCC------CcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC
Confidence            688888765442      799999998887765321111      11134443 688888775441  123444443221


Q ss_pred             CcceEEEEEec-C-CCceeEEEEEEeCCCEEEEEeCC-------CeEEEEECCCCeEEEE
Q 044435          288 KDSWSKLFTMN-E-NGYRVIPLAFSSRGDKVLFQKNS-------KDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~~~~~i~-~-~~~~~~~~~~~~~g~~v~~~~~~-------~~~~~ydl~~~~~~~v  338 (378)
                        .-...  +. . ......-+.+.++|. +++....       ..++.||+++++++.+
T Consensus       123 --~~~~~--~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~  177 (333)
T 2dg1_A          123 --NLQDI--IEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  177 (333)
T ss_dssp             --SCEEE--ECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             --EEEEE--EccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEe
Confidence              11111  11 1 111244566677887 5555442       4599999988877765

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=85.54  E-value=28  Score=33.94  Aligned_cols=154  Identities=8%  Similarity=0.008  Sum_probs=78.7

Q ss_pred             cceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCe-EEEEeecCCCcccceEEEEEEcCCc-eeeeecCCCC
Q 044435          171 YHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGA-LHWLANQNQDEMINDLILAFDLNIE-TFYSMPMPGF  248 (378)
Q Consensus       171 ~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~-lyw~~~~~~~~~~~~~i~~fD~~~~-~~~~i~lP~~  248 (378)
                      ....+.+++..++.-+.+...   ..  .......-...-||. ++........  ....|..+|+.++ ....+.....
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~---~~--~~~~~~~~~~spdg~~l~~~~~~~~~--~~~~v~~~d~~~g~~~~~~~~~~~  305 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTG---EP--KEKFLTNLSWSPDENILYVAEVNRAQ--NECKVNAYDAETGRFVRTLFVETD  305 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCC---SC--TTCEEEEEEECTTSSEEEEEEECTTS--CEEEEEEEETTTCCEEEEEEEEEC
T ss_pred             CeeEEEEEECCCCceEeeccC---CC--CceeEeeEEEECCCCEEEEEEeCCCC--CeeEEEEEECCCCceeeEEEEccC
Confidence            345788888887765444311   00  000000001122565 4443332211  1247899999887 6655521111


Q ss_pred             CCCCCCcccceEEEE---CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-C
Q 044435          249 GNEGGGGELSGVYVL---KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-K  323 (378)
Q Consensus       249 ~~~~~~~~~~~l~~~---~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-~  323 (378)
                      .... .... .+...   +|++.++...++...||.++..+  .   ....+.. .......+++.++|+.|++.... .
T Consensus       306 ~~~~-~~~~-~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~--~---~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~  378 (706)
T 2z3z_A          306 KHYV-EPLH-PLTFLPGSNNQFIWQSRRDGWNHLYLYDTTG--R---LIRQVTKGEWEVTNFAGFDPKGTRLYFESTEAS  378 (706)
T ss_dssp             SSCC-CCCS-CCEECTTCSSEEEEEECTTSSCEEEEEETTS--C---EEEECCCSSSCEEEEEEECTTSSEEEEEESSSC
T ss_pred             CCeE-CccC-CceeecCCCCEEEEEEccCCccEEEEEECCC--C---EEEecCCCCeEEEeeeEEcCCCCEEEEEecCCC
Confidence            1000 0000 12332   78866655555688899987422  1   2233333 22223346788888877776543 2


Q ss_pred             ----eEEEEECCCCeEEEE
Q 044435          324 ----DHCWYHLDMHRVESF  338 (378)
Q Consensus       324 ----~~~~ydl~~~~~~~v  338 (378)
                          .++.+|+++++.+.+
T Consensus       379 ~~~~~l~~~d~~~~~~~~l  397 (706)
T 2z3z_A          379 PLERHFYCIDIKGGKTKDL  397 (706)
T ss_dssp             TTCBEEEEEETTCCCCEES
T ss_pred             CceEEEEEEEcCCCCceec
Confidence                688999988877666

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=85.52  E-value=21  Score=32.32  Aligned_cols=191  Identities=10%  Similarity=-0.029  Sum_probs=92.7

Q ss_pred             cceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEE
Q 044435          107 NGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWR  186 (378)
Q Consensus       107 ~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~  186 (378)
                      .+.|++.. ...+...++.++....+-+.       .....++.+|+..+...++-       .....+..++..+...+
T Consensus        87 ~~~l~~~~-~~~I~~i~~~~~~~~~~~~~-------~~~~~gl~~d~~~~~ly~~D-------~~~~~I~r~~~~g~~~~  151 (386)
T 3v65_B           87 EPVLLFAN-RIDIRQVLPHRSEYTLLLNN-------LENAIALDFHHRRELVFWSD-------VTLDRILRANLNGSNVE  151 (386)
T ss_dssp             CCEEEEEC-BSCEEEECTTSCCCEEEECS-------CSCEEEEEEETTTTEEEEEE-------TTTTEEEEEETTSCCEE
T ss_pred             cceeEeec-CccceeeccCCCcEEEEecC-------CCccEEEEEecCCCeEEEEe-------CCCCcEEEEecCCCCcE
Confidence            34444442 34567777766655443321       11345788887665433321       12345677777666554


Q ss_pred             ecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE
Q 044435          187 RIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL  263 (378)
Q Consensus       187 ~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~  263 (378)
                      .+...       ..  ....++.+   +|.|||.....      ..|.++|+....-..+. .....     .+..+++.
T Consensus       152 ~~~~~-------~~--~~p~glavd~~~g~lY~~d~~~------~~I~~~~~dg~~~~~l~-~~~l~-----~P~giavd  210 (386)
T 3v65_B          152 EVVST-------GL--ESPGGLAVDWVHDKLYWTDSGT------SRIEVANLDGAHRKVLL-WQSLE-----KPRAIALH  210 (386)
T ss_dssp             EEECS-------SC--SCCCCEEEETTTTEEEEEETTT------TEEEECBTTSCSCEEEE-CSSCS-----CEEEEEEE
T ss_pred             EEEeC-------CC--CCccEEEEEeCCCeEEEEcCCC------CeEEEEeCCCCceEEee-cCCCC-----CCcEEEEE
Confidence            43221       11  11224443   68999987654      37999998765433331 11111     11144554


Q ss_pred             --CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          264 --KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       264 --~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                        +|.||+..... .-.|+..+-.+... -.   .+...+....-+++.++++.|++... ...+..+|+.+...+.+
T Consensus       211 p~~g~ly~td~~~-~~~I~r~~~dG~~~-~~---~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~  283 (386)
T 3v65_B          211 PMEGTIYWTDWGN-TPRIEASSMDGSGR-RI---IADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAV  283 (386)
T ss_dssp             TTTTEEEEEECSS-SCEEEEEETTSCSC-EE---EECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEE
T ss_pred             cCCCeEEEeccCC-CCEEEEEeCCCCCc-EE---EEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEE
Confidence              67888876544 23445554332211 00   01111112333455444444555443 33477777765544443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=85.21  E-value=17  Score=31.08  Aligned_cols=139  Identities=12%  Similarity=0.045  Sum_probs=78.3

Q ss_pred             ceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCce-eeeecCCCCCC
Q 044435          172 HIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIET-FYSMPMPGFGN  250 (378)
Q Consensus       172 ~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~-~~~i~lP~~~~  250 (378)
                      ...+.+++..+++=...-.+   +.    ......-...++.+|.+.....      .+.+||..+.+ -..|+.|....
T Consensus        64 ~S~v~~vD~~Tgkv~~~~~l---~~----~~FgeGit~~g~~ly~ltw~~~------~v~v~D~~t~~~~~ti~~~~eG~  130 (262)
T 3nol_A           64 RSSIRKVDIESGKTLQQIEL---GK----RYFGEGISDWKDKIVGLTWKNG------LGFVWNIRNLRQVRSFNYDGEGW  130 (262)
T ss_dssp             EEEEEEECTTTCCEEEEEEC---CT----TCCEEEEEEETTEEEEEESSSS------EEEEEETTTCCEEEEEECSSCCC
T ss_pred             CceEEEEECCCCcEEEEEec---CC----ccceeEEEEeCCEEEEEEeeCC------EEEEEECccCcEEEEEECCCCce
Confidence            46788999998743222112   11    1111112445778888876553      89999998754 45567664221


Q ss_pred             CCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-C-C---ceeEEEEEEeCCCEEEEEeC-CCe
Q 044435          251 EGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-N-G---YRVIPLAFSSRGDKVLFQKN-SKD  324 (378)
Q Consensus       251 ~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~-~---~~~~~~~~~~~g~~v~~~~~-~~~  324 (378)
                              .++..+++|++...   .-.||++|..    +=....+|.. . .   ....-+... +|. |+.... ...
T Consensus       131 --------glt~dg~~L~~SdG---s~~i~~iDp~----T~~v~~~I~V~~~g~~~~~lNELe~~-~G~-lyan~w~~~~  193 (262)
T 3nol_A          131 --------GLTHNDQYLIMSDG---TPVLRFLDPE----SLTPVRTITVTAHGEELPELNELEWV-DGE-IFANVWQTNK  193 (262)
T ss_dssp             --------CEEECSSCEEECCS---SSEEEEECTT----TCSEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTSSE
T ss_pred             --------EEecCCCEEEEECC---CCeEEEEcCC----CCeEEEEEEeccCCccccccceeEEE-CCE-EEEEEccCCe
Confidence                    34544556777653   2347777753    2233445544 1 1   111123333 675 666653 556


Q ss_pred             EEEEECCCCeEEEE-eE
Q 044435          325 HCWYHLDMHRVESF-LV  340 (378)
Q Consensus       325 ~~~ydl~~~~~~~v-~~  340 (378)
                      +...|++|+++... ..
T Consensus       194 I~vIDp~tG~V~~~Id~  210 (262)
T 3nol_A          194 IVRIDPETGKVTGIIDL  210 (262)
T ss_dssp             EEEECTTTCBEEEEEEC
T ss_pred             EEEEECCCCcEEEEEEC
Confidence            99999999997544 44

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=84.97  E-value=23  Score=32.29  Aligned_cols=200  Identities=10%  Similarity=0.059  Sum_probs=98.2

Q ss_pred             eEEEeecCCcEEEEcCcccce--eecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc-E
Q 044435          109 LLALKNYPKGIILLNPLTKKH--RVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL-W  185 (378)
Q Consensus       109 Ll~l~~~~~~~~V~NP~t~~~--~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~-W  185 (378)
                      +|+.......+.|||..++.-  ..+.+.... ..+......+.+.+..+.+-+.+ .      ....+.+|+.+++. .
T Consensus       196 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~l~s~-~------~dg~i~i~d~~~~~~~  267 (430)
T 2xyi_A          196 YLLSASDDHTICLWDINATPKEHRVIDAKNIF-TGHTAVVEDVAWHLLHESLFGSV-A------DDQKLMIWDTRNNNTS  267 (430)
T ss_dssp             EEEEECTTSCEEEEETTSCCBGGGEEECSEEE-CCCSSCEEEEEECSSCTTEEEEE-E------TTSEEEEEETTCSCSS
T ss_pred             eEEEEeCCCeEEEEeCCCCCCCCceeccceee-cCCCCCEeeeEEeCCCCCEEEEE-e------CCCeEEEEECCCCCCC
Confidence            555555667788998877321  111111100 01122344566766544433332 2      23568889987642 1


Q ss_pred             EecCcccCCCccccccccCCcceee--CCe-EEEEeecCCCcccceEEEEEEcCCce--eeeecCCCCCCCCCCcccceE
Q 044435          186 RRIKNIKNFPYSWADHSYGGNGAFV--NGA-LHWLANQNQDEMINDLILAFDLNIET--FYSMPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       186 ~~~~~~~~~p~~~~~~~~~~~~v~~--~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~--~~~i~lP~~~~~~~~~~~~~l  260 (378)
                      +.+...       ......-.++.+  +|. ++..+..++      .|..||+.+..  ...+..  +..     .+..+
T Consensus       268 ~~~~~~-------~~~~~~v~~i~~~p~~~~~l~tg~~dg------~v~vwd~~~~~~~~~~~~~--h~~-----~v~~i  327 (430)
T 2xyi_A          268 KPSHTV-------DAHTAEVNCLSFNPYSEFILATGSADK------TVALWDLRNLKLKLHSFES--HKD-----EIFQV  327 (430)
T ss_dssp             SCSEEE-------ECCSSCEEEEEECSSCTTEEEEEETTS------EEEEEETTCTTSCSEEEEC--CSS-----CEEEE
T ss_pred             cceeEe-------ecCCCCeEEEEeCCCCCCEEEEEeCCC------eEEEEeCCCCCCCeEEeec--CCC-----CEEEE
Confidence            111000       000000112333  243 565655543      79999988632  222211  111     11023


Q ss_pred             EEE-CC-eEEEEEcCCCcEEEEEeccCCCCcc--------eEEEEEecCCCceeEEEEEEeCCC-EEEEEeCCCeEEEEE
Q 044435          261 YVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDS--------WSKLFTMNENGYRVIPLAFSSRGD-KVLFQKNSKDHCWYH  329 (378)
Q Consensus       261 ~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~--------W~~~~~i~~~~~~~~~~~~~~~g~-~v~~~~~~~~~~~yd  329 (378)
                      ... +| .+.+....++.+.||.+...+....        -.++...........-+.+.+++. +++....++.+.+|+
T Consensus       328 ~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          328 QWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             EECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             EECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence            333 34 5677777777999999886331100        122333322111255677777887 666677777788888


Q ss_pred             CCCCeEE
Q 044435          330 LDMHRVE  336 (378)
Q Consensus       330 l~~~~~~  336 (378)
                      +..+.+.
T Consensus       408 ~~~~~~~  414 (430)
T 2xyi_A          408 MAENVYN  414 (430)
T ss_dssp             ECHHHHC
T ss_pred             ccccccc
Confidence            8765443

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=84.81  E-value=17  Score=30.71  Aligned_cols=189  Identities=12%  Similarity=0.108  Sum_probs=99.1

Q ss_pred             eccceEEEeec--CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          105 SCNGLLALKNY--PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       105 s~~GLl~l~~~--~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      ..+|.+.+.+.  ...+.++|+..+....+....      .....++.+|+.. ...|.   .    .....+.+|+...
T Consensus        86 ~~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~------~~~~~~i~~~~~g-~l~v~---~----~~~~~i~~~~~~g  151 (286)
T 1q7f_A           86 RNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATI------LQHPRGVTVDNKG-RIIVV---E----CKVMRVIIFDQNG  151 (286)
T ss_dssp             TTTTEEEEEECGGGCEEEEECTTSCEEEEECTTT------CSCEEEEEECTTS-CEEEE---E----TTTTEEEEECTTS
T ss_pred             cCCCeEEEEcCCCCCEEEEECCCCcEEEEecCcc------CCCceEEEEeCCC-CEEEE---E----CCCCEEEEEcCCC
Confidence            45777766653  577889996554444443221      1123466777643 32221   1    1134577777654


Q ss_pred             CcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l  260 (378)
                      ..-+.....   .   ..  ....++.+  +|.+|+.....      ..|..||...+....+..+....     .+..+
T Consensus       152 ~~~~~~~~~---~---~~--~~p~~i~~~~~g~l~v~~~~~------~~i~~~~~~g~~~~~~~~~g~~~-----~p~~i  212 (286)
T 1q7f_A          152 NVLHKFGCS---K---HL--EFPNGVVVNDKQEIFISDNRA------HCVKVFNYEGQYLRQIGGEGITN-----YPIGV  212 (286)
T ss_dssp             CEEEEEECT---T---TC--SSEEEEEECSSSEEEEEEGGG------TEEEEEETTCCEEEEESCTTTSC-----SEEEE
T ss_pred             CEEEEeCCC---C---cc--CCcEEEEECCCCCEEEEECCC------CEEEEEcCCCCEEEEEccCCccC-----CCcEE
Confidence            433333211   0   00  11123444  47877655443      37999999776666554332111     11134


Q ss_pred             EEE-CCeEEEEEcCCC-cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCC
Q 044435          261 YVL-KGCLSLLCKYSE-PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDM  332 (378)
Q Consensus       261 ~~~-~G~L~~~~~~~~-~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~  332 (378)
                      +.. +|.|++...... .+.+|..+  +   .-..............-+++.++|. +++...+..+.+|+...
T Consensus       213 ~~d~~G~l~v~~~~~~~~i~~~~~~--g---~~~~~~~~~~~~~~~~~i~~~~~g~-l~vs~~~~~v~v~~~~~  280 (286)
T 1q7f_A          213 GINSNGEILIADNHNNFNLTIFTQD--G---QLISALESKVKHAQCFDVALMDDGS-VVLASKDYRLYIYRYVQ  280 (286)
T ss_dssp             EECTTCCEEEEECSSSCEEEEECTT--S---CEEEEEEESSCCSCEEEEEEETTTE-EEEEETTTEEEEEECSC
T ss_pred             EECCCCCEEEEeCCCCEEEEEECCC--C---CEEEEEcccCCCCcceeEEECCCCc-EEEECCCCeEEEEEccc
Confidence            443 689998887665 78777532  1   1221122222221244567777887 55556666788887754

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=84.68  E-value=28  Score=33.15  Aligned_cols=196  Identities=10%  Similarity=-0.012  Sum_probs=100.2

Q ss_pred             cceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc--CCC
Q 044435          107 NGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL--KVN  183 (378)
Q Consensus       107 ~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss--~~~  183 (378)
                      +|.+++.. ....+.|+|+.|++....-+..  .   .  ..++.+++... |-++.  .     ....+.+|+.  .++
T Consensus       148 ~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g--~---~--~~~v~~spdg~-~l~v~--~-----~d~~V~v~D~~~~t~  212 (543)
T 1nir_A          148 PNLFSVTLRDAGQIALVDGDSKKIVKVIDTG--Y---A--VHISRMSASGR-YLLVI--G-----RDARIDMIDLWAKEP  212 (543)
T ss_dssp             GGEEEEEEGGGTEEEEEETTTCCEEEEEECS--T---T--EEEEEECTTSC-EEEEE--E-----TTSEEEEEETTSSSC
T ss_pred             CCEEEEEEcCCCeEEEEECCCceEEEEEecC--c---c--cceEEECCCCC-EEEEE--C-----CCCeEEEEECcCCCC
Confidence            56665554 4566889999998764321111  0   1  33566666433 32222  1     1257888998  554


Q ss_pred             cEEecCcccCCCccccccccCCcceee------CCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCC----
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV------NGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEG----  252 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~------~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~----  252 (378)
                      .  .+...   +.  +.   ...++.+      +|..-+.+....     ..|..+|..+.+. ..++.+......    
T Consensus       213 ~--~~~~i---~~--g~---~p~~va~sp~~~~dg~~l~v~~~~~-----~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~  277 (543)
T 1nir_A          213 T--KVAEI---KI--GI---EARSVESSKFKGYEDRYTIAGAYWP-----PQFAIMDGETLEPKQIVSTRGMTVDTQTYH  277 (543)
T ss_dssp             E--EEEEE---EC--CS---EEEEEEECCSTTCTTTEEEEEEEES-----SEEEEEETTTCCEEEEEECCEECSSSCCEE
T ss_pred             c--EEEEE---ec--CC---CcceEEeCCCcCCCCCEEEEEEccC-----CeEEEEeccccccceeecccCcccCccccc
Confidence            3  22222   21  11   0112222      566544444322     2789999887654 334543211000    


Q ss_pred             CCcccceEEEE-CCeEEEEEc-CCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEE
Q 044435          253 GGGELSGVYVL-KGCLSLLCK-YSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWY  328 (378)
Q Consensus       253 ~~~~~~~l~~~-~G~L~~~~~-~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~y  328 (378)
                      .......+... +|...++.. ..+++.+|-..+..  .  .++..++. ..  .+-+++.++|..++.... +..+.++
T Consensus       278 ~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~--~--l~~~~i~~~~~--~~~~~~spdg~~l~va~~~~~~v~v~  351 (543)
T 1nir_A          278 PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID--N--LTVTSIGAAPF--LHDGGWDSSHRYFMTAANNSNKVAVI  351 (543)
T ss_dssp             SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS--S--CEEEEEECCSS--CCCEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC--c--ceeEEeccCcC--ccCceECCCCCEEEEEecCCCeEEEE
Confidence            00011023333 344444444 33477777766532  1  12334444 33  445778889996665543 5579999


Q ss_pred             ECCCCeEEEE
Q 044435          329 HLDMHRVESF  338 (378)
Q Consensus       329 dl~~~~~~~v  338 (378)
                      |++++++...
T Consensus       352 D~~tg~l~~~  361 (543)
T 1nir_A          352 DSKDRRLSAL  361 (543)
T ss_dssp             ETTTTEEEEE
T ss_pred             ECCCCeEEEe
Confidence            9999987654

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=84.56  E-value=21  Score=31.57  Aligned_cols=191  Identities=7%  Similarity=-0.045  Sum_probs=93.4

Q ss_pred             eccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +.+|-.++. ..+..+.|||..+++....-...      ......+.+.+....+ ++...      ....+.+++.+++
T Consensus       136 spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h------~~~V~~~~~~~~~~~~-l~s~s------~D~~v~iwd~~~~  202 (344)
T 4gqb_B          136 LSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH------AAQVTCVAASPHKDSV-FLSCS------EDNRILLWDTRCP  202 (344)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCC------SSCEEEEEECSSCTTE-EEEEE------TTSCEEEEETTSS
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCc------CCceEEEEecCCCCCc-eeeec------ccccccccccccc
Confidence            445654444 45667899999998765432211      1223345555544333 22222      1245788888765


Q ss_pred             cEEe-cCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435          184 LWRR-IKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG  259 (378)
Q Consensus       184 ~W~~-~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~  259 (378)
                      .-.. +...   ..     .....++.+   ++.+...+..+.      .|..+|+.+.+... .+..+..     .+..
T Consensus       203 ~~~~~~~~~---~~-----~~~~~~~~~~p~~~~~l~sg~~dg------~v~~wd~~~~~~~~-~~~~h~~-----~v~~  262 (344)
T 4gqb_B          203 KPASQIGCS---AP-----GYLPTSLAWHPQQSEVFVFGDENG------TVSLVDTKSTSCVL-SSAVHSQ-----CVTG  262 (344)
T ss_dssp             SCEEECC------------CCCEEEEEECSSCTTEEEEEETTS------EEEEEESCC--CCE-EEECCSS-----CEEE
T ss_pred             ceeeeeecc---ee-----eccceeeeecCCCCcceEEeccCC------cEEEEECCCCcEEE-EEcCCCC-----CEEE
Confidence            4322 1111   00     000112222   344554444442      68889988654321 1111111     1113


Q ss_pred             EEEE-CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEE-EEeCCCeEEEEECCCCeE
Q 044435          260 VYVL-KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVL-FQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       260 l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~-~~~~~~~~~~ydl~~~~~  335 (378)
                      +... +| ++.+....++.+.||-+..   +   . ..........+.-++++++|..++ -...++.+..+++.++..
T Consensus       263 v~fsp~g~~~lasgs~D~~i~vwd~~~---~---~-~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          263 LVFSPHSVPFLASLSEDCSLAVLDSSL---S---E-LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEECSSSSCCEEEEETTSCEEEECTTC---C---E-EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC---
T ss_pred             EEEccCCCeEEEEEeCCCeEEEEECCC---C---c-EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCCCC
Confidence            3433 45 4555556667999996543   1   1 222222111256677787776444 455677899999987654

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=84.25  E-value=8.9  Score=38.07  Aligned_cols=115  Identities=14%  Similarity=0.089  Sum_probs=57.6

Q ss_pred             ceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEE
Q 044435          207 GAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWV  281 (378)
Q Consensus       207 ~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~  281 (378)
                      ++.+   +|.|||......     ..|..+++.......+-.. ...     ....|+..  +|+||++.....+|.  +
T Consensus       500 giavDp~~g~ly~td~~~~-----~~I~~~~~dG~~~~~l~~~-~l~-----~PnGlavd~~~~~LY~aD~~~~~I~--~  566 (699)
T 1n7d_A          500 AIVVDPVHGFMYWTDWGTP-----AKIKKGGLNGVDIYSLVTE-NIQ-----WPNGITLDLLSGRLYWVDSKLHSIS--S  566 (699)
T ss_dssp             CEECCSSSSCCEECCCSSS-----CCEEBCCSSSCCCCEESCS-SCS-----SCCCEEECTTTCCEEEEETTTTEEE--E
T ss_pred             eEEEccCCCcEEEcccCCC-----CeEEEEeCCCCCeeEEEeC-CCC-----CccEEEEeccCCEEEEEecCCCeEE--E
Confidence            4555   689999764321     2688888765443333111 111     01134554  578999886544544  4


Q ss_pred             eccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          282 MKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       282 l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                      ++-.+...  ..+  +........|.++.-+++.|++... ..+|..+|..+++...+
T Consensus       567 ~d~dG~~~--~~~--~~~~~~~~~P~glavd~~~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          567 IDVNGGNR--KTI--LEDEKRLAHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             ECSSSSCC--EEE--CCCSSSCSSCCCCEEETTEEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EccCCCce--EEE--EecCCcCCCceEeEEECCEEEEEeCCCCeEEEEEccCCCceEE
Confidence            44322111  111  1111111234444434555666543 34699999887765444

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=84.16  E-value=17  Score=31.79  Aligned_cols=106  Identities=9%  Similarity=0.014  Sum_probs=63.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeec-CCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMP-MPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~-lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      +|.+...+..+.      .|..+|+.+++...+. .+....     .. .+... +|.+.++...++.+.||-+......
T Consensus       138 ~~~~l~s~s~dg------~i~~wd~~~~~~~~~~~~~~~~~-----i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          138 NTEYFIWADNRG------TIGFQSYEDDSQYIVHSAKSDVE-----YS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             -CCEEEEEETTC------CEEEEESSSSCEEEEECCCSSCC-----CC-EEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CCCEEEEEeCCC------cEEEEECCCCcEEEEEecCCCCc-----eE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            455555555442      6999999887664432 222111     11 33333 6787777777789999988753211


Q ss_pred             cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                           ...+.. ......-+.+.++|..++... ++.+..||+++.+
T Consensus       206 -----~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~  246 (343)
T 3lrv_A          206 -----SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV  246 (343)
T ss_dssp             -----CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred             -----ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence                 012222 222356677888888666666 4479999998765

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=83.85  E-value=12  Score=31.94  Aligned_cols=108  Identities=8%  Similarity=0.035  Sum_probs=61.3

Q ss_pred             CCe-EEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          211 NGA-LHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       211 ~G~-lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      +|. +||......      .|..||..++ .+.+..|...-      . .++.. +|+|++.......+.+|..+.    
T Consensus        38 ~g~~l~~~~~~~~------~i~~~~~~~~-~~~~~~~~~~~------~-~l~~~~dg~l~v~~~~~~~i~~~d~~~----   99 (296)
T 3e5z_A           38 ARSAVIFSDVRQN------RTWAWSDDGQ-LSPEMHPSHHQ------N-GHCLNKQGHLIACSHGLRRLERQREPG----   99 (296)
T ss_dssp             GGTEEEEEEGGGT------EEEEEETTSC-EEEEESSCSSE------E-EEEECTTCCEEEEETTTTEEEEECSTT----
T ss_pred             CCCEEEEEeCCCC------EEEEEECCCC-eEEEECCCCCc------c-eeeECCCCcEEEEecCCCeEEEEcCCC----
Confidence            465 999887653      7999999988 76665543211      1 34443 688877665445666665432    


Q ss_pred             cceEEEEEe-cC-CCceeEEEEEEeCCCEEEEEeC------------------CCeEEEEECCCCeEEEE
Q 044435          289 DSWSKLFTM-NE-NGYRVIPLAFSSRGDKVLFQKN------------------SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       289 ~~W~~~~~i-~~-~~~~~~~~~~~~~g~~v~~~~~------------------~~~~~~ydl~~~~~~~v  338 (378)
                      ......... .. ......-+++.++|. +++...                  ...++.||.+ ++.+.+
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAP  167 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEe
Confidence            123322211 11 111123466677887 555321                  2368899987 666555

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=83.63  E-value=25  Score=31.75  Aligned_cols=209  Identities=12%  Similarity=-0.036  Sum_probs=103.2

Q ss_pred             eeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          104 GSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       104 ~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      +..+|.|.+.+ ....+..+++.++....+.....      ....++++|+..+...+.-       .....+++++...
T Consensus       124 d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~------~~p~glavd~~~g~lY~~d-------~~~~~I~~~~~dg  190 (386)
T 3v65_B          124 HHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGL------ESPGGLAVDWVHDKLYWTD-------SGTSRIEVANLDG  190 (386)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSC------SCCCCEEEETTTTEEEEEE-------TTTTEEEECBTTS
T ss_pred             ecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCC------CCccEEEEEeCCCeEEEEc-------CCCCeEEEEeCCC
Confidence            34567776665 45567788887765444422111      1122667776655433321       1123566666654


Q ss_pred             CcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435          183 NLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG  259 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~  259 (378)
                      ..-+.+...       .  .....++.+   +|.|||......     ..|..+|+....-..+-- ....     ....
T Consensus       191 ~~~~~l~~~-------~--l~~P~giavdp~~g~ly~td~~~~-----~~I~r~~~dG~~~~~~~~-~~~~-----~PnG  250 (386)
T 3v65_B          191 AHRKVLLWQ-------S--LEKPRAIALHPMEGTIYWTDWGNT-----PRIEASSMDGSGRRIIAD-THLF-----WPNG  250 (386)
T ss_dssp             CSCEEEECS-------S--CSCEEEEEEETTTTEEEEEECSSS-----CEEEEEETTSCSCEEEEC-SSCS-----CEEE
T ss_pred             CceEEeecC-------C--CCCCcEEEEEcCCCeEEEeccCCC-----CEEEEEeCCCCCcEEEEE-CCCC-----Ceee
Confidence            322222111       0  011234444   589999875441     379999988654443311 1111     1114


Q ss_pred             EEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEEC-CCCeE
Q 044435          260 VYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHL-DMHRV  335 (378)
Q Consensus       260 l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl-~~~~~  335 (378)
                      |+..  +|+||++.....+  |+..+-.+... -.   .+....  ..|.++.-+++.+++... ..++..+|. .....
T Consensus       251 lavd~~~~~lY~aD~~~~~--I~~~d~dG~~~-~~---~~~~~~--~~P~giav~~~~ly~td~~~~~V~~~~~~~G~~~  322 (386)
T 3v65_B          251 LTIDYAGRRMYWVDAKHHV--IERANLDGSHR-KA---VISQGL--PHPFAITVFEDSLYWTDWHTKSINSANKFTGKNQ  322 (386)
T ss_dssp             EEEEGGGTEEEEEETTTTE--EEEECTTSCSC-EE---EECSSC--SSEEEEEEETTEEEEEETTTTEEEEEETTTCCSC
T ss_pred             EEEeCCCCEEEEEECCCCE--EEEEeCCCCee-EE---EEECCC--CCceEEEEECCEEEEeeCCCCeEEEEECCCCcce
Confidence            5554  7899999866554  44454333211 11   111122  234444333444666553 456999994 44445


Q ss_pred             EEEeEeC--CcceEEeeecc
Q 044435          336 ESFLVKG--PSDVHVCVDTL  353 (378)
Q Consensus       336 ~~v~~~~--~~~~~~y~~sl  353 (378)
                      +.|....  +..+.+|.+..
T Consensus       323 ~~i~~~~~~p~gi~v~~~~~  342 (386)
T 3v65_B          323 EIIRNKLHFPMDIHTLHPQR  342 (386)
T ss_dssp             EEEECSCSCCCCEEEESGGG
T ss_pred             EEEccCCCCCceEEEEchhc
Confidence            5553221  22566665543

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=83.52  E-value=20  Score=30.48  Aligned_cols=67  Identities=12%  Similarity=0.152  Sum_probs=38.2

Q ss_pred             eccceEEEeecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          105 SCNGLLALKNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       105 s~~GLl~l~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      |.+|+|... .+..+.|||..|++...+-....+    ......+.+.+.. .+-+.+ .      ....+.+++.+++.
T Consensus        34 S~~~~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~----~~~V~~v~~~~~~-~~l~sg-s------~Dg~v~iw~~~~~~  100 (318)
T 4ggc_A           34 SSGNVLAVA-LDNSVYLWSASSGDILQLLQMEQP----GEYISSVAWIKEG-NYLAVG-T------SSAEVQLWDVQQQK  100 (318)
T ss_dssp             CTTSEEEEE-ETTEEEEEETTTCCEEEEEECCST----TCCEEEEEECTTS-SEEEEE-E------TTSEEEEEETTTTE
T ss_pred             CCCCEEEEE-eCCEEEEEECCCCCEEEEEEecCC----CCeEEEEEECCCC-CEEEEE-E------CCCcEEEeecCCce
Confidence            456765444 456799999999987654332221    1223456665543 333332 1      13467888887764

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=83.44  E-value=19  Score=32.36  Aligned_cols=69  Identities=7%  Similarity=-0.003  Sum_probs=46.8

Q ss_pred             CCeEEEEEcCC-------CcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCC-EEEEEe-CCCeEEEEECCCC
Q 044435          264 KGCLSLLCKYS-------EPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGD-KVLFQK-NSKDHCWYHLDMH  333 (378)
Q Consensus       264 ~G~L~~~~~~~-------~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~-~v~~~~-~~~~~~~ydl~~~  333 (378)
                      +++||+.....       ..-.||+++-    .+...+.+|+. ..  ..-+.+.++|+ .++... .++.+.+||.++.
T Consensus       278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~----~t~~vv~~i~~g~~--p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~  351 (373)
T 2mad_H          278 SDGIYLLTSEQSAWKLHAAAKEVTSVTG----LVGQTSSQISLGHD--VDAISVAQDGGPDLYALSAGTEVLHIYDAGAG  351 (373)
T ss_pred             CCEEEEEeccCCcccccCCCCeEEEEEC----CCCEEEEEEECCCC--cCeEEECCCCCeEEEEEcCCCCeEEEEECCCC
Confidence            35777765421       1236888875    35777788876 43  45677788998 555554 3567999999998


Q ss_pred             eEEEE
Q 044435          334 RVESF  338 (378)
Q Consensus       334 ~~~~v  338 (378)
                      +..+.
T Consensus       352 ~vv~~  356 (373)
T 2mad_H          352 DQDQS  356 (373)
T ss_pred             CEEee
Confidence            87654

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=83.30  E-value=19  Score=30.23  Aligned_cols=195  Identities=10%  Similarity=0.018  Sum_probs=100.1

Q ss_pred             EeeeccceEEEeec-CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          102 IIGSCNGLLALKNY-PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       102 ~~~s~~GLl~l~~~-~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      +....+|-+.+... ...+.++||. ++...++.+..     .....++.+|+.. ...+.   . .   ....+..|+.
T Consensus        20 i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~-----~~~~~~i~~~~~g-~l~v~---~-~---~~~~i~~~~~   85 (299)
T 2z2n_A           20 ITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTP-----DAKVMCLTISSDG-EVWFT---E-N---AANKIGRITK   85 (299)
T ss_dssp             EEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSST-----TCCEEEEEECTTS-CEEEE---E-T---TTTEEEEECT
T ss_pred             eEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcc-----cCceeeEEECCCC-CEEEe---C-C---CCCeEEEECC
Confidence            44445677666653 5678899998 77665543211     1123456666543 22221   1 1   1234666665


Q ss_pred             CCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccc
Q 044435          181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELS  258 (378)
Q Consensus       181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~  258 (378)
                      . +..+....    |.  .  .....++.+  +|.+|+.....      ..|..+|. +.+...+.+|.....    -. 
T Consensus        86 ~-g~~~~~~~----~~--~--~~~~~~i~~~~~g~l~v~~~~~------~~i~~~d~-~g~~~~~~~~~~~~~----~~-  144 (299)
T 2z2n_A           86 K-GIIKEYTL----PN--P--DSAPYGITEGPNGDIWFTEMNG------NRIGRITD-DGKIREYELPNKGSY----PS-  144 (299)
T ss_dssp             T-SCEEEEEC----SS--T--TCCEEEEEECTTSCEEEEETTT------TEEEEECT-TCCEEEEECSSTTCC----EE-
T ss_pred             C-CcEEEEeC----CC--c--CCCceeeEECCCCCEEEEecCC------ceEEEECC-CCCEEEecCCCCCCC----Cc-
Confidence            4 44443321    11  0  011123443  57776654433      27999999 666666655532211    11 


Q ss_pred             eEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEE
Q 044435          259 GVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVE  336 (378)
Q Consensus       259 ~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~  336 (378)
                      .++.. +|+|++.......+.  .++..   ...... .++.......-+++.++|. +++... ...+..||+ +++++
T Consensus       145 ~i~~~~~g~l~v~~~~~~~i~--~~~~~---g~~~~~-~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~  216 (299)
T 2z2n_A          145 FITLGSDNALWFTENQNNAIG--RITES---GDITEF-KIPTPASGPVGITKGNDDA-LWFVEIIGNKIGRITT-SGEIT  216 (299)
T ss_dssp             EEEECTTSCEEEEETTTTEEE--EECTT---CCEEEE-ECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEE
T ss_pred             eEEEcCCCCEEEEeCCCCEEE--EEcCC---CcEEEe-eCCCCCCcceeEEECCCCC-EEEEccCCceEEEECC-CCcEE
Confidence            34444 688888775444443  34431   123221 1222221234456666777 566553 456999999 77777


Q ss_pred             EEe
Q 044435          337 SFL  339 (378)
Q Consensus       337 ~v~  339 (378)
                      .+.
T Consensus       217 ~~~  219 (299)
T 2z2n_A          217 EFK  219 (299)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=83.30  E-value=24  Score=31.33  Aligned_cols=196  Identities=10%  Similarity=0.067  Sum_probs=101.0

Q ss_pred             eeccceE-EEee--cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEc
Q 044435          104 GSCNGLL-ALKN--YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGL  180 (378)
Q Consensus       104 ~s~~GLl-~l~~--~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss  180 (378)
                      -|-+|-+ .+..  .+..+.|||+.+++.........     .  ...+.|.|.+ .+-+.  ..      ...+.++..
T Consensus       141 fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~-----~--V~~v~fspdg-~~l~s--~s------~~~~~~~~~  204 (365)
T 4h5i_A          141 ISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRG-----E--VKDLHFSTDG-KVVAY--IT------GSSLEVIST  204 (365)
T ss_dssp             ECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSS-----C--CCEEEECTTS-SEEEE--EC------SSCEEEEET
T ss_pred             EcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCC-----c--eEEEEEccCC-ceEEe--cc------ceeEEEEEe
Confidence            3445643 3433  34668899999988765543211     1  2345565543 22222  11      123455555


Q ss_pred             CCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee---cCCCCCCCCCCccc
Q 044435          181 KVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM---PMPGFGNEGGGGEL  257 (378)
Q Consensus       181 ~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i---~lP~~~~~~~~~~~  257 (378)
                      .++.-......   ..  .......-...-+|.....+..+...  ...+..+|.........   .+..+..     .+
T Consensus       205 ~~~~~~~~~~~---~~--~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~V  272 (365)
T 4h5i_A          205 VTGSCIARKTD---FD--KNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSKQVTNRFK-----GI  272 (365)
T ss_dssp             TTCCEEEEECC---CC--TTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEEEEESSCS-----CE
T ss_pred             ccCcceeeeec---CC--CCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeeeeecCCCC-----Ce
Confidence            55433221110   00  00000011122356666555443211  12466667665544332   2222221     11


Q ss_pred             ceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          258 SGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       258 ~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      ..+... +|++.+....++.+.||-++.      ...+..+.. ....+.-+++.+||..++-...++.+-++|+..+
T Consensus       273 ~~~~~Spdg~~lasgs~D~~V~iwd~~~------~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          273 TSMDVDMKGELAVLASNDNSIALVKLKD------LSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEECTTSCEEEEEETTSCEEEEETTT------TEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EeEEECCCCCceEEEcCCCEEEEEECCC------CcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            133333 788888777778999998764      334455433 3333677888999997777777888999997543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=82.78  E-value=33  Score=32.46  Aligned_cols=105  Identities=9%  Similarity=-0.001  Sum_probs=64.3

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCC-CCCCCCCcccceEEEE-----------CCeEEEEEcCCCcEE
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPG-FGNEGGGGELSGVYVL-----------KGCLSLLCKYSEPWD  278 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~-~~~~~~~~~~~~l~~~-----------~G~L~~~~~~~~~l~  278 (378)
                      +|.+...+..+.      .|..||+.+.+.... +.. +..     .+..+...           +|++.++...++.+.
T Consensus       499 ~g~~l~~~~~dg------~i~iw~~~~~~~~~~-~~~~h~~-----~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~  566 (615)
T 1pgu_A          499 SETYIAAGDVMG------KILLYDLQSREVKTS-RWAFRTS-----KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  566 (615)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEC-CSCCCSS-----CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             CCCEEEEcCCCC------eEEEeeCCCCcceeE-eecCCCC-----ceeEEEEcCccccccccccCCCEEEEEcCCCcEE
Confidence            677666665543      699999987655332 221 111     11133332           678777777778999


Q ss_pred             EEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          279 LWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       279 iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      ||.++...     .....+........-+.+.++|. ++....++.+..+|++++
T Consensus       567 iw~~~~~~-----~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~~  615 (615)
T 1pgu_A          567 IYSVKRPM-----KIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVLE  615 (615)
T ss_dssp             EEESSCTT-----CCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC--
T ss_pred             EEECCCCc-----eechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeecC
Confidence            99998632     12233333112355678888998 777777888999998753

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=82.62  E-value=36  Score=32.86  Aligned_cols=195  Identities=9%  Similarity=-0.064  Sum_probs=100.4

Q ss_pred             CcEEEEcCcc------cceeecC-CCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcC-CCc--
Q 044435          117 KGIILLNPLT------KKHRVLP-KFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLK-VNL--  184 (378)
Q Consensus       117 ~~~~V~NP~t------~~~~~LP-~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~-~~~--  184 (378)
                      ..++++|..+      ++...|. ....       ....+.+.|.. .+ |+.......  .-....+.+++.. ++.  
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~~SpDG-~~-la~~~~~~~~~~~~~~~i~~~d~~~~g~~~  231 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHR-------FVTGPRLSPDG-RQ-AVWLAWDHPRMPWEGTELKTARVTEDGRFA  231 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSS-------EECCCEECTTS-SE-EEEEEECTTCCTTTCEEEEEEEECTTSCEE
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCC-------cccCceECCCC-CE-EEEEECCCCCCCCCCcEEEEEEECCCCccc
Confidence            4689999998      7777665 3221       11233444432 22 222222111  0123578888888 563  


Q ss_pred             -EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcc--cceE
Q 044435          185 -WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGE--LSGV  260 (378)
Q Consensus       185 -W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~--~~~l  260 (378)
                       .+.+...   .    ..........-||.+|+.+..+.    ...|..+|+.++++..+ ........ ..+.  ...+
T Consensus       232 ~~~~l~~~---~----~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~~-p~w~~~~~~~  299 (662)
T 3azo_A          232 DTRTLLGG---P----EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFAG-PLWTPGMRWF  299 (662)
T ss_dssp             EEEEEEEE---T----TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSSC-CCCSTTCCSE
T ss_pred             ccEEeCCC---C----CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeecccccccccC-ccccccCceE
Confidence             3333211   0    00000111123788888776542    13799999877777655 32222111 0111  1134


Q ss_pred             EEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCC---eEEEEECCCCeE
Q 044435          261 YVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSK---DHCWYHLDMHRV  335 (378)
Q Consensus       261 ~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~---~~~~ydl~~~~~  335 (378)
                      ... +|++.+.... +...||.++-.+  ..   ...+.........+. ..+|+.+++.. ...   .++.+|+++++.
T Consensus       300 ~~~~~~~~~~~~~~-~~~~l~~~d~~~--~~---~~~l~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~  372 (662)
T 3azo_A          300 APLANGLIAVVHGK-GAAVLGILDPES--GE---LVDAAGPWTEWAATL-TVSGTRAVGVAASPRTAYEVVELDTVTGRA  372 (662)
T ss_dssp             EECTTSCEEEEEBS-SSCEEEEEETTT--TE---EEECCSSCCEEEEEE-EEETTEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             eEeCCCEEEEEEEc-CccEEEEEECCC--Cc---EEEecCCCCeEEEEE-ecCCCEEEEEEcCCCCCCEEEEEECCCCce
Confidence            444 6888888777 888999987532  12   233433111122231 33555444443 322   589999999998


Q ss_pred             EEEe
Q 044435          336 ESFL  339 (378)
Q Consensus       336 ~~v~  339 (378)
                      +.+.
T Consensus       373 ~~l~  376 (662)
T 3azo_A          373 RTIG  376 (662)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            8883

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=82.53  E-value=18  Score=33.06  Aligned_cols=110  Identities=7%  Similarity=0.048  Sum_probs=61.6

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CC-eEEEEEcCCCcEEEEEeccCCC
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KG-CLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G-~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      -+|.|||.....      ..|..+|+.+.+...+.....       .. .++.. +| .|++...... ..||.++..+ 
T Consensus       140 ~~g~lyv~d~~~------~~I~~id~~~g~~~~~~~~~~-------~~-~ia~~~~g~~l~~~d~~~~-~~I~~~d~~~-  203 (409)
T 3hrp_A          140 GNNTVLAYQRDD------PRVRLISVDDNKVTTVHPGFK-------GG-KPAVTKDKQRVYSIGWEGT-HTVYVYMKAS-  203 (409)
T ss_dssp             STTEEEEEETTT------TEEEEEETTTTEEEEEEETCC-------BC-BCEECTTSSEEEEEBSSTT-CEEEEEEGGG-
T ss_pred             CCCCEEEEecCC------CcEEEEECCCCEEEEeeccCC-------CC-ceeEecCCCcEEEEecCCC-ceEEEEEcCC-
Confidence            368999987654      379999999877766622211       01 12222 34 4555443322 2566666532 


Q ss_pred             CcceE--EEEEecC-CCceeEEEEEEe-CCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          288 KDSWS--KLFTMNE-NGYRVIPLAFSS-RGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~--~~~~i~~-~~~~~~~~~~~~-~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                        .|.  ....+.. ......-+++.+ +|. +++......++.||++++..+.+
T Consensus       204 --~~~~~~~g~~~~~~~~~p~~iav~p~~g~-lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          204 --GWAPTRIGQLGSTFSGKIGAVALDETEEW-LYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             --TTCEEEEEECCTTSCSCCCBCEECTTSSE-EEEECTTCEEEEEETTTCCEEEE
T ss_pred             --CceeEEeeeccchhcCCcEEEEEeCCCCe-EEEEECCCcEEEEECCCCCEEEE
Confidence              233  2212222 222234466777 455 66665556799999998876665

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=81.85  E-value=46  Score=33.50  Aligned_cols=173  Identities=14%  Similarity=0.038  Sum_probs=90.9

Q ss_pred             EEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceee---CCeEEEEeecCCCc
Q 044435          148 GFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV---NGALHWLANQNQDE  224 (378)
Q Consensus       148 ~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~---~G~lyw~~~~~~~~  224 (378)
                      ++++|...+..++.-       .....+++++.....-+.+...       .  .....++.+   +|.|||......  
T Consensus       475 GLAvD~~~~~LY~tD-------~~~~~I~v~~ldG~~~~~l~~~-------~--l~~P~gIaVDp~~g~LYwtD~g~~--  536 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTD-------SVLGTVSVADTKGVKRKTLFRE-------N--GSKPRAIVVDPVHGFMYWTDWGTP--  536 (791)
T ss_dssp             EEEEETTTTEEEEEE-------TTTTEEEEEETTSSSEEEEEEC-------T--TCCEEEEEEETTTTEEEEEECSSS--
T ss_pred             eeeeeecCCcEEEEe-------cCCCeEEEEeCCCCeEEEEEeC-------C--CCCcceEEEecCCCCEEEecCCCC--
Confidence            677787665433221       1234678888765544443211       0  112335666   589999874432  


Q ss_pred             ccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE--CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCc
Q 044435          225 MINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL--KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGY  302 (378)
Q Consensus       225 ~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~--~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~  302 (378)
                         ..|..+++....-..+-. ....     .+..|+..  +|+||++.....  .||+.+-.+. ...+.+. -...+ 
T Consensus       537 ---~~I~~~~~dG~~~~~lv~-~~l~-----~P~GLavD~~~~~LYwaD~~~~--~I~~~d~dG~-~~~~v~~-~~~~l-  602 (791)
T 3m0c_C          537 ---AKIKKGGLNGVDIYSLVT-ENIQ-----WPNGITLDLLSGRLYWVDSKLH--SISSIDVNGG-NRKTILE-DEKRL-  602 (791)
T ss_dssp             ---CEEEEEETTSCCEEEEEC-SSCS-----CEEEEEEETTTTEEEEEETTTT--EEEEEETTSC-SCEEEEE-CTTTT-
T ss_pred             ---CeEEEEecCCCceEEEEe-CCCC-----CceEEEEecCCCeEEEEeCCCC--cEEEEecCCC-ceEEEec-CCCcc-
Confidence               379999998655544411 1111     11145554  789999976544  4555554332 2222221 00122 


Q ss_pred             eeEEEEEEeCCCEEEEEeCC-CeEEEEECCCCeEEEEeEeC---CcceEEeeecc
Q 044435          303 RVIPLAFSSRGDKVLFQKNS-KDHCWYHLDMHRVESFLVKG---PSDVHVCVDTL  353 (378)
Q Consensus       303 ~~~~~~~~~~g~~v~~~~~~-~~~~~ydl~~~~~~~v~~~~---~~~~~~y~~sl  353 (378)
                       ..|+++...++.|++.... ..++.+|..+++-..+-..+   +..+.+|.+..
T Consensus       603 -~~P~glav~~~~lYwtD~~~~~I~~~dk~tG~~~~~l~~~l~~P~~i~v~h~~~  656 (791)
T 3m0c_C          603 -AHPFSLAVFEDKVFWTDIINEAIFSANRLTGSDVNLLAENLLSPEDMVLFHNLT  656 (791)
T ss_dssp             -SSEEEEEEETTEEEEEETTTTEEEEEETTTCCCCEEEECSCSCCCCEEEESGGG
T ss_pred             -CCCCEEEEeCCEEEEEECCCCEEEEEeCCCCcceEEeecCCCCceeEeeecccc
Confidence             4466665556657766543 45888997666433332233   23666666554

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=81.11  E-value=43  Score=32.70  Aligned_cols=95  Identities=19%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             EEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEE
Q 044435          229 LILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPL  307 (378)
Q Consensus       229 ~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~  307 (378)
                      .|..+|+.+.+.... +..+..     .+..+... +|++.+....++.+.||-+...      ..+..+... .....+
T Consensus       542 ~v~vwd~~~~~~~~~-~~~h~~-----~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~------~~~~~~~~~-~~v~~~  608 (694)
T 3dm0_A          542 TVKVWNLSNCKLRST-LAGHTG-----YVSTVAVSPDGSLCASGGKDGVVLLWDLAEG------KKLYSLEAN-SVIHAL  608 (694)
T ss_dssp             CEEEEETTTCCEEEE-ECCCSS-----CEEEEEECTTSSEEEEEETTSBCEEEETTTT------EEEECCBCS-SCEEEE
T ss_pred             eEEEEECCCCcEEEE-EcCCCC-----CEEEEEEeCCCCEEEEEeCCCeEEEEECCCC------ceEEEecCC-CcEEEE
Confidence            688999987655432 111111     11133443 6788877777789999988752      123333331 125667


Q ss_pred             EEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          308 AFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       308 ~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      ++.+++..+... .+..+..||+++++...
T Consensus       609 ~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~  637 (694)
T 3dm0_A          609 CFSPNRYWLCAA-TEHGIKIWDLESKSIVE  637 (694)
T ss_dssp             EECSSSSEEEEE-ETTEEEEEETTTTEEEE
T ss_pred             EEcCCCcEEEEE-cCCCEEEEECCCCCChh
Confidence            788888844444 45569999999987543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=80.43  E-value=25  Score=29.62  Aligned_cols=156  Identities=13%  Similarity=0.075  Sum_probs=86.6

Q ss_pred             eeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcc
Q 044435          146 LHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEM  225 (378)
Q Consensus       146 ~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~  225 (378)
                      .-|+.|+.   .  .+...  .+......+.+++..++.=...-.+   |.  .  .....-+..++.+|.+.....   
T Consensus        23 tqGL~~~~---~--~Lyes--tG~~g~S~v~~vD~~tgkv~~~~~l---~~--~--~fgeGi~~~~~~ly~ltw~~~---   85 (243)
T 3mbr_X           23 TEGLFYLR---G--HLYES--TGETGRSSVRKVDLETGRILQRAEV---PP--P--YFGAGIVAWRDRLIQLTWRNH---   85 (243)
T ss_dssp             EEEEEEET---T--EEEEE--ECCTTSCEEEEEETTTCCEEEEEEC---CT--T--CCEEEEEEETTEEEEEESSSS---
T ss_pred             cccEEEEC---C--EEEEE--CCCCCCceEEEEECCCCCEEEEEeC---CC--C--cceeEEEEeCCEEEEEEeeCC---
Confidence            44777775   2  22222  2223356889999998744332222   21  1  111223456788999876653   


Q ss_pred             cceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC--
Q 044435          226 INDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG--  301 (378)
Q Consensus       226 ~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~--  301 (378)
                         .+.+||..+.+- ..++.|...     +   .|+..+++|++... ..  .|+++|..    +=..+.+|.. ..  
T Consensus        86 ---~v~v~D~~tl~~~~ti~~~~~G-----w---glt~dg~~L~vSdg-s~--~l~~iDp~----t~~~~~~I~V~~~g~  147 (243)
T 3mbr_X           86 ---EGFVYDLATLTPRARFRYPGEG-----W---ALTSDDSHLYMSDG-TA--VIRKLDPD----TLQQVGSIKVTAGGR  147 (243)
T ss_dssp             ---EEEEEETTTTEEEEEEECSSCC-----C---EEEECSSCEEEECS-SS--EEEEECTT----TCCEEEEEECEETTE
T ss_pred             ---EEEEEECCcCcEEEEEeCCCCc-----e---EEeeCCCEEEEECC-CC--eEEEEeCC----CCeEEEEEEEccCCc
Confidence               899999987544 556666421     1   44555667887763 22  46777752    2334455554 11  


Q ss_pred             --ceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeEEEE
Q 044435          302 --YRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       302 --~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~~~v  338 (378)
                        ....-+-.. +|. |+... ....+...|++++++...
T Consensus       148 ~~~~lNeLe~~-~G~-lyanvw~s~~I~vIDp~tG~V~~~  185 (243)
T 3mbr_X          148 PLDNLNELEWV-NGE-LLANVWLTSRIARIDPASGKVVAW  185 (243)
T ss_dssp             ECCCEEEEEEE-TTE-EEEEETTTTEEEEECTTTCBEEEE
T ss_pred             ccccceeeEEe-CCE-EEEEECCCCeEEEEECCCCCEEEE
Confidence              111112222 566 66665 355699999999996544

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=80.37  E-value=31  Score=32.87  Aligned_cols=109  Identities=6%  Similarity=-0.070  Sum_probs=66.6

Q ss_pred             eCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCC
Q 044435          210 VNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       210 ~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      -+|.+|.....+.      .|..+|..+.+. ..++....        ...++.. +|+..++...++.+.+|-++.   
T Consensus       147 p~~~~~vs~~~d~------~V~v~D~~t~~~~~~i~~g~~--------~~~v~~spdg~~l~v~~~d~~V~v~D~~~---  209 (543)
T 1nir_A          147 LPNLFSVTLRDAG------QIALVDGDSKKIVKVIDTGYA--------VHISRMSASGRYLLVIGRDARIDMIDLWA---  209 (543)
T ss_dssp             GGGEEEEEEGGGT------EEEEEETTTCCEEEEEECSTT--------EEEEEECTTSCEEEEEETTSEEEEEETTS---
T ss_pred             CCCEEEEEEcCCC------eEEEEECCCceEEEEEecCcc--------cceEEECCCCCEEEEECCCCeEEEEECcC---
Confidence            3677777665543      789999987654 33443221        1023333 665555554457889998842   


Q ss_pred             CcceEEEEEecC-CCceeEEEEEEe----CCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          288 KDSWSKLFTMNE-NGYRVIPLAFSS----RGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~~~~~i~~-~~~~~~~~~~~~----~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                       .+-..+.++.. ..  .+-+++++    +|+.++.... +..+.++|.++.+..+.
T Consensus       210 -~t~~~~~~i~~g~~--p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~  263 (543)
T 1nir_A          210 -KEPTKVAEIKIGIE--ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQI  263 (543)
T ss_dssp             -SSCEEEEEEECCSE--EEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEE
T ss_pred             -CCCcEEEEEecCCC--cceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccccee
Confidence             11233455554 32  55677888    8997777653 56699999998875443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	378
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	2e-06
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	0.002

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 8/38 (21%), Positives = 16/38 (42%)

Query: 5  KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDF 42
           LP ++++ I   L    LL+   + K +  L   +  
Sbjct: 3  SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL 40

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.002
 Identities = 9/37 (24%), Positives = 17/37 (45%)

Query: 6  LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDF 42
          LP ++ + +L  L  K LL+     + +R L +    
Sbjct: 22 LPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLL 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	378
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.97
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	98.87
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.48
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.43
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.42
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.26
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.13
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	95.41
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	94.79
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	94.44
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	93.32
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	92.76
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	91.23
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	91.23
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	91.18
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	90.18
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	89.51
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	89.27
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	88.7
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	86.78
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	86.77
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	86.76
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	84.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	84.13
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	83.23
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	82.31
d1tbga_	340	beta1-subunit of the signal-transducing G protein	81.95
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	81.69
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	81.57
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	81.07
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	80.95

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.4e-12  Score=76.90  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=36.0

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccCChhH
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDF   42 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F   42 (378)
                      .||+|++.+||++||++++.++++|||+|+++++++.+
T Consensus         3 ~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~l   40 (41)
T d1fs1a1           3 SLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESL   40 (41)
T ss_dssp             SSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGG
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCccc
Confidence            69999999999999999999999999999999998764

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=8.2e-08  Score=83.15  Aligned_cols=198  Identities=11%  Similarity=0.070  Sum_probs=125.5

Q ss_pred             CCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCC
Q 044435          116 PKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFP  195 (378)
Q Consensus       116 ~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p  195 (378)
                      ...+.++||.+.+|..+|+++.++..   .. ...+   .+  ++..+...........+++|+..++.|...+.+   +
T Consensus        69 ~~~~~~yd~~~~~w~~~~~~p~~r~~---~~-~~~~---~~--~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~---~  136 (288)
T d1zgka1          69 SSALDCYNPMTNQWSPCAPMSVPRNR---IG-VGVI---DG--HIYAVGGSHGCIHHNSVERYEPERDEWHLVAPM---L  136 (288)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBT---CE-EEEE---TT--EEEEECCEETTEECCCEEEEETTTTEEEECCCC---S
T ss_pred             cchhhhcccccccccccccccceecc---ee-cccc---ce--eeEEecceecccccceeeeeccccCcccccccc---c
Confidence            34688999999999999988865432   11 1112   12  233332212333445688999999999998766   3


Q ss_pred             ccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCC
Q 044435          196 YSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSE  275 (378)
Q Consensus       196 ~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~  275 (378)
                      .    .......+..++.+|..++... ......+..||+.+++|.....+....    ... .....+++++++.....
T Consensus       137 ~----~r~~~~~~~~~~~~~~~GG~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~----~~~-~~~~~~~~i~i~GG~~~  206 (288)
T d1zgka1         137 T----RRIGVGVAVLNRLLYAVGGFDG-TNRLNSAECYYPERNEWRMITAMNTIR----SGA-GVCVLHNCIYAAGGYDG  206 (288)
T ss_dssp             S----CCBSCEEEEETTEEEEECCBCS-SCBCCCEEEEETTTTEEEECCCCSSCC----BSC-EEEEETTEEEEECCBCS
T ss_pred             c----ccccceeeeeeecceEecCccc-ccccceEEEeecccccccccccccccc----ccc-cccceeeeEEEecCccc
Confidence            3    2344557888999998876543 223357999999999999885443332    122 56777899999887553


Q ss_pred             ---cEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEeE
Q 044435          276 ---PWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       276 ---~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~~  340 (378)
                         .-..|..+..  ...|..+..++. +.  ...+++. +|+++++...+     ..++.||+++++|+.+.-
T Consensus       207 ~~~~~~~~~~~~~--~~~~~~~~~~p~~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~  275 (288)
T d1zgka1         207 QDQLNSVERYDVE--TETWTFVAPMKHRRS--ALGITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTR  275 (288)
T ss_dssp             SSBCCCEEEEETT--TTEEEECCCCSSCCB--SCEEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEE
T ss_pred             cccccceeeeeec--ceeeecccCccCccc--ceEEEEE-CCEEEEEecCCCCeecceEEEEECCCCEEEECCC
Confidence               3355555542  356877655544 33  2223333 56644443221     248999999999999953

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.5e-08  Score=84.83  Aligned_cols=199  Identities=10%  Similarity=-0.003  Sum_probs=122.9

Q ss_pred             CcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecC--CCcceEEEEEEcCCCcEEecCcccCC
Q 044435          117 KGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKS--PVYHIEATVYGLKVNLWRRIKNIKNF  194 (378)
Q Consensus       117 ~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~--~~~~~~~~vyss~~~~W~~~~~~~~~  194 (378)
                      ..+.++||.|++|..+|++|.++..    . +....  .+...|++......  ......+++|+..++.|+.++.+   
T Consensus        19 ~~~~~yd~~t~~W~~~~~~p~~R~~----~-~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~---   88 (288)
T d1zgka1          19 SYLEAYNPSNGTWLRLADLQVPRSG----L-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPM---   88 (288)
T ss_dssp             CCEEEEETTTTEEEECCCCSSCCBS----C-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCC---
T ss_pred             ceEEEEECCCCeEEECCCCCCccce----e-EEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccccccccc---
Confidence            3577999999999999988865432    1 11111  23333333332211  22345799999999999999887   


Q ss_pred             CccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCC
Q 044435          195 PYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYS  274 (378)
Q Consensus       195 p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~  274 (378)
                      |.    .+....++.++|++|.+++.... .....+..+|..+++|...+.+....    ... ..+..+++++++....
T Consensus        89 p~----~r~~~~~~~~~~~i~~~gg~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r----~~~-~~~~~~~~~~~~GG~~  158 (288)
T d1zgka1          89 SV----PRNRIGVGVIDGHIYAVGGSHGC-IHHNSVERYEPERDEWHLVAPMLTRR----IGV-GVAVLNRLLYAVGGFD  158 (288)
T ss_dssp             SS----CCBTCEEEEETTEEEEECCEETT-EECCCEEEEETTTTEEEECCCCSSCC----BSC-EEEEETTEEEEECCBC
T ss_pred             cc----eecceeccccceeeEEecceecc-cccceeeeeccccCcccccccccccc----ccc-eeeeeeecceEecCcc
Confidence            54    33455678899999998865432 22356889999999998874433322    223 5667789999887654


Q ss_pred             C---cEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCC-----CeEEEEECCCCeEEEEe
Q 044435          275 E---PWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNS-----KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       275 ~---~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~-----~~~~~ydl~~~~~~~v~  339 (378)
                      .   .-.++.++..  ...|.......... ........ ++.++++...+     .....||..+++|+.+.
T Consensus       159 ~~~~~~~~~~~d~~--~~~~~~~~~~~~~~-~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~  227 (288)
T d1zgka1         159 GTNRLNSAECYYPE--RNEWRMITAMNTIR-SGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA  227 (288)
T ss_dssp             SSCBCCCEEEEETT--TTEEEECCCCSSCC-BSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred             cccccceEEEeecc--cccccccccccccc-ccccccce-eeeEEEecCccccccccceeeeeecceeeeccc
Confidence            3   3345555542  24577554333311 12222332 45533333211     24899999999999984

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.48  E-value=4.3e-06  Score=75.10  Aligned_cols=218  Identities=8%  Similarity=-0.030  Sum_probs=119.4

Q ss_pred             eeccceEEEee--cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcC
Q 044435          104 GSCNGLLALKN--YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLK  181 (378)
Q Consensus       104 ~s~~GLl~l~~--~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~  181 (378)
                      ...+|.+++..  ......++||.|++|..+|.++..+..   ....+-   ..+.+.+++... ........+++|+..
T Consensus        83 ~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~---~~~~~~---~dG~v~v~GG~~-~~~~~~~~v~~yd~~  155 (387)
T d1k3ia3          83 MDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGY---QSSATM---SDGRVFTIGGSW-SGGVFEKNGEVYSPS  155 (387)
T ss_dssp             ECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSS---CEEEEC---TTSCEEEECCCC-CSSSCCCCEEEEETT
T ss_pred             EecCCcEEEeecCCCcceeEecCccCcccccccccccccc---cceeee---cCCceeeecccc-ccccccceeeeecCC
Confidence            34577776664  446788999999999999998876532   111111   123333333221 223345679999999


Q ss_pred             CCcEEecCcccCCCccccccccC-------Ccc---eeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCC
Q 044435          182 VNLWRRIKNIKNFPYSWADHSYG-------GNG---AFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGN  250 (378)
Q Consensus       182 ~~~W~~~~~~~~~p~~~~~~~~~-------~~~---v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~  250 (378)
                      +++|+.++.+   +.........       ...   ...+|.+|..+...      ..+..+|..+..|... ..|....
T Consensus       156 ~~~W~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~~~~~  226 (387)
T d1k3ia3         156 SKTWTSLPNA---KVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPST------AMNWYYTSGSGDVKSAGKRQSNRG  226 (387)
T ss_dssp             TTEEEEETTS---CSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSS------EEEEEECSTTCEEEEEEECEETTE
T ss_pred             CCceeecCCC---cccccccccccceeeccceeEEEEeCCCCEEEecCcC------CcEEecCcccCcEeeccccccCcc
Confidence            9999998755   2200111111       111   11256666655433      4788999999999776 3332211


Q ss_pred             CC--CCccc-ceEEEECCeEEEEEcCCC--------cEEEEEeccCCC-CcceEEEEEecC-CCceeEEEEEEeCCCEEE
Q 044435          251 EG--GGGEL-SGVYVLKGCLSLLCKYSE--------PWDLWVMKEYGV-KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVL  317 (378)
Q Consensus       251 ~~--~~~~~-~~l~~~~G~L~~~~~~~~--------~l~iW~l~~~~~-~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~  317 (378)
                      ..  ..... ..+...+|+++++.....        ...+..+..+.. ...|.....++. +.  .....+..||.+++
T Consensus       227 ~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~--~~~~~~~~dg~i~v  304 (387)
T d1k3ia3         227 VAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFART--FHTSVVLPDGSTFI  304 (387)
T ss_dssp             ECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCB--SCEEEECTTSCEEE
T ss_pred             cCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccc--cceeeeccCCeEEE
Confidence            11  00111 012224789988886432        334444443322 233444333333 22  33444455788555


Q ss_pred             EEeCC-----------CeEEEEECCCCeEEEEe
Q 044435          318 FQKNS-----------KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       318 ~~~~~-----------~~~~~ydl~~~~~~~v~  339 (378)
                      +....           ..+..||+++++|+.+.
T Consensus       305 ~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~  337 (387)
T d1k3ia3         305 TGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  337 (387)
T ss_dssp             ECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             ECCcccCccCCCCcEeceEEEEECCCCeEEECC
Confidence            54311           13678999999999984

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=2.2e-08  Score=72.84  Aligned_cols=46  Identities=20%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHHhh
Q 044435            4 WKLPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHLSR   49 (378)
Q Consensus         4 ~~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~~~   49 (378)
                      ..||+||+..||+.||+.+|+++.+|||+|+.++.++.+=+....+
T Consensus        20 ~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r   65 (102)
T d2ovrb1          20 SLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAEDNLLWREKCKE   65 (102)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTT
T ss_pred             hhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Confidence            3599999999999999999999999999999999999886665543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=1.5e-08  Score=73.31  Aligned_cols=38  Identities=18%  Similarity=0.392  Sum_probs=34.9

Q ss_pred             CCCHHHHHHHHhcCCccccceeeecchhhhcccC-ChhH
Q 044435            5 KLPLDVIIDILIRLPGKSLLRFRCISKSFRSLID-SKDF   42 (378)
Q Consensus         5 ~LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~-~p~F   42 (378)
                      .||+||+++||+.|++++|+++++|||+|+.+++ ++.+
T Consensus         8 ~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~~d~~L   46 (100)
T d1nexb1           8 SLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRKSTSL   46 (100)
T ss_dssp             HSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHHTCSHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCHHH
Confidence            5999999999999999999999999999999985 5664

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.26  E-value=3.5e-06  Score=75.71  Aligned_cols=192  Identities=9%  Similarity=-0.070  Sum_probs=110.8

Q ss_pred             cCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEec----CCCcceEEEEEEcCCCcEEecCcccCCCccc
Q 044435          123 NPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFK----SPVYHIEATVYGLKVNLWRRIKNIKNFPYSW  198 (378)
Q Consensus       123 NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~----~~~~~~~~~vyss~~~~W~~~~~~~~~p~~~  198 (378)
                      .|++++|..+++.|...     .  ..+..+..+...|++.....    .......+++|+..+++|+....+   +.  
T Consensus         5 ~p~~g~W~~~~~~p~~~-----~--~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~~--   72 (387)
T d1k3ia3           5 QPGLGRWGPTIDLPIVP-----A--AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---VT--   72 (387)
T ss_dssp             CTTSCEEEEEEECSSCC-----S--EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---EC--
T ss_pred             CCCCCccCCcCCCCccc-----c--EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCC---CC--
Confidence            58999999887776432     1  22333444444444332211    122344689999999999887554   22  


Q ss_pred             cccccCC-cceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE-ECCeEEEEEcCCC
Q 044435          199 ADHSYGG-NGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSE  275 (378)
Q Consensus       199 ~~~~~~~-~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~  275 (378)
                      ....... ..+..+|++|+.++.+.     ..+..||+.+++|+.+ .+|....     .. ..+. .+|+++++.....
T Consensus        73 ~~~~~~~~~~~~~~g~i~v~Gg~~~-----~~~~~yd~~~~~w~~~~~~~~~r~-----~~-~~~~~~dG~v~v~GG~~~  141 (387)
T d1k3ia3          73 KHDMFCPGISMDGNGQIVVTGGNDA-----KKTSLYDSSSDSWIPGPDMQVARG-----YQ-SSATMSDGRVFTIGGSWS  141 (387)
T ss_dssp             SCCCSSCEEEECTTSCEEEECSSST-----TCEEEEEGGGTEEEECCCCSSCCS-----SC-EEEECTTSCEEEECCCCC
T ss_pred             CcccceeEEEEecCCcEEEeecCCC-----cceeEecCccCccccccccccccc-----cc-ceeeecCCceeeeccccc
Confidence            1111112 24556999999887653     3688999999999988 4443322     22 3344 3799999987532


Q ss_pred             ----cEEEEEeccCCCCcceEEEEEecC-CC----------ceeEE-EEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435          276 ----PWDLWVMKEYGVKDSWSKLFTMNE-NG----------YRVIP-LAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       276 ----~l~iW~l~~~~~~~~W~~~~~i~~-~~----------~~~~~-~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~  339 (378)
                          .-.++..+..  ..+|.....+.. ..          ..... +....+|++++..........||..+..|+...
T Consensus       142 ~~~~~~~v~~yd~~--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~  219 (387)
T d1k3ia3         142 GGVFEKNGEVYSPS--SKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAG  219 (387)
T ss_dssp             SSSCCCCEEEEETT--TTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEE
T ss_pred             cccccceeeeecCC--CCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeecc
Confidence                2234444432  357987644332 10          00111 222236663333333446889999999998874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.2e-07  Score=70.76  Aligned_cols=42  Identities=17%  Similarity=0.079  Sum_probs=37.1

Q ss_pred             CCHHHHHHHHhcCCccccceeeecchhhhcccCChhHHHHHH
Q 044435            6 LPLDVIIDILIRLPGKSLLRFRCISKSFRSLIDSKDFINLHL   47 (378)
Q Consensus         6 LP~dll~~IL~rLP~~sl~r~r~VcK~W~~li~~p~F~~~~~   47 (378)
                      |+|||+..||+.|++++|.++.+|||+|+.+++++.+=+...
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~   59 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKEWYRVTSDGMLWKKLI   59 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHHTTHHHHHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCHHHHHHHH
Confidence            346999999999999999999999999999999887765544

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.41  E-value=0.62  Score=39.19  Aligned_cols=212  Identities=8%  Similarity=-0.057  Sum_probs=105.8

Q ss_pred             ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|-|.+.+ ...+++.+||.+++.........      ....++.+++.. ...|+..   ........+..++..++.
T Consensus        49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~------~~p~gla~~~dG-~l~va~~---~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHK------ANPAAIKIHKDG-RLFVCYL---GDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             TTSCEEEEETTTCEEEEECTTTCCEEEEEECSS------SSEEEEEECTTS-CEEEEEC---TTSSSCCEEEEECTTSCS
T ss_pred             CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCC------CCeeEEEECCCC-CEEEEec---CCCccceeEEEEcCCCce
Confidence            456555555 55678888998876544321111      112366666643 3333221   111123345555555554


Q ss_pred             EEec-CcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE
Q 044435          185 WRRI-KNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL  263 (378)
Q Consensus       185 W~~~-~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~  263 (378)
                      .... ...   ..   ......-.+.-+|.+|+.............+..+|........+.-+...       ...++..
T Consensus       119 ~~~~~~~~---~~---~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~-------pnGia~s  185 (319)
T d2dg1a1         119 LQDIIEDL---ST---AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISV-------ANGIALS  185 (319)
T ss_dssp             CEEEECSS---SS---CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESS-------EEEEEEC
T ss_pred             eeeeccCC---Cc---ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccce-------eeeeeec
Confidence            4333 221   11   11111112344788777643322112234688888877666554111000       0034443


Q ss_pred             -CC-eEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEE
Q 044435          264 -KG-CLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESF  338 (378)
Q Consensus       264 -~G-~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v  338 (378)
                       +| .|+++.....++..+.++..+. ..+........   ......-+++..+|.+.+-.....++..||++.+.+.+|
T Consensus       186 ~dg~~lyvad~~~~~I~~~d~~~~g~-~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~G~~l~~i  264 (319)
T d2dg1a1         186 TDEKVLWVTETTANRLHRIALEDDGV-TIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKRGYPIGQI  264 (319)
T ss_dssp             TTSSEEEEEEGGGTEEEEEEECTTSS-SEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTTSCEEEEE
T ss_pred             cccceEEEecccCCceEEEEEcCCCc-eeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCCCcEEEEE
Confidence             45 5888776655655555554332 22333332222   222234466777888444344566799999999989998


Q ss_pred             eEe
Q 044435          339 LVK  341 (378)
Q Consensus       339 ~~~  341 (378)
                      .+.
T Consensus       265 ~~P  267 (319)
T d2dg1a1         265 LIP  267 (319)
T ss_dssp             ECT
T ss_pred             eCC
Confidence            764

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.93  Score=37.86  Aligned_cols=203  Identities=8%  Similarity=-0.007  Sum_probs=105.8

Q ss_pred             EEeeeccceEEEeecCCcEEEEcCcccceeec-CCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEE
Q 044435          101 IIIGSCNGLLALKNYPKGIILLNPLTKKHRVL-PKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYG  179 (378)
Q Consensus       101 ~~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~L-P~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vys  179 (378)
                      .+.-+.+|..+.......+.|||..++..... .......+  ......+.+.+.. .+-+++ .      ....+.+|+
T Consensus        56 ~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h--~~~I~~v~~s~dg-~~l~s~-~------~dg~i~iwd  125 (337)
T d1gxra_          56 AVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNR--DNYIRSCKLLPDG-CTLIVG-G------EASTLSIWD  125 (337)
T ss_dssp             EEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCT--TSBEEEEEECTTS-SEEEEE-E------SSSEEEEEE
T ss_pred             EEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCC--CCcEEEEEEcCCC-CEEEEe-e------ccccccccc
Confidence            34455677766665556788999776543221 11111111  1123355665543 443332 2      134688888


Q ss_pred             cCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccce
Q 044435          180 LKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSG  259 (378)
Q Consensus       180 s~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~  259 (378)
                      ......+.....   ..  ...........-+|.+...+..+      ..|..+|+.+++..........      .+..
T Consensus       126 ~~~~~~~~~~~~---~~--~~~~v~~~~~~~~~~~l~s~~~d------~~i~~~~~~~~~~~~~~~~~~~------~v~~  188 (337)
T d1gxra_         126 LAAPTPRIKAEL---TS--SAPACYALAISPDSKVCFSCCSD------GNIAVWDLHNQTLVRQFQGHTD------GASC  188 (337)
T ss_dssp             CCCC--EEEEEE---EC--SSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECCCSS------CEEE
T ss_pred             cccccccccccc---cc--ccccccccccccccccccccccc------cccccccccccccccccccccc------cccc
Confidence            876655443322   11  00000000112245555554443      2689999988766544222111      1102


Q ss_pred             EEE-ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEE
Q 044435          260 VYV-LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVES  337 (378)
Q Consensus       260 l~~-~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~  337 (378)
                      +.. .+|...++...++.+.+|.+....      .+..... ..  ..-+++.++++.++....++.+..||+++.+...
T Consensus       189 l~~s~~~~~~~~~~~d~~v~i~d~~~~~------~~~~~~~~~~--i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~  260 (337)
T d1gxra_         189 IDISNDGTKLWTGGLDNTVRSWDLREGR------QLQQHDFTSQ--IFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ  260 (337)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTTE------EEEEEECSSC--EEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE
T ss_pred             ccccccccccccccccccccccccccce------eecccccccc--eEEEEEcccccccceecccccccccccccccccc
Confidence            333 256666666666788899776521      2222333 22  4456677788877777778889999998887654


Q ss_pred             E
Q 044435          338 F  338 (378)
Q Consensus       338 v  338 (378)
                      .
T Consensus       261 ~  261 (337)
T d1gxra_         261 L  261 (337)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.44  E-value=1.1  Score=37.16  Aligned_cols=197  Identities=12%  Similarity=0.029  Sum_probs=102.7

Q ss_pred             eccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +-+|-+++. ..+..+.|||..+++....-.....    ......+.+.+.. .+-+++..     .....+.|++..++
T Consensus        67 sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~d~-~~l~~~~~-----~~~~~~~v~~~~~~  136 (311)
T d1nr0a1          67 SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVF----SGPVKDISWDSES-KRIAAVGE-----GRERFGHVFLFDTG  136 (311)
T ss_dssp             CTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECS----SSCEEEEEECTTS-CEEEEEEC-----CSSCSEEEEETTTC
T ss_pred             eCCCCeEeccccCceEeeeeeeccccccccccccc----cCccccccccccc-cccccccc-----cccccccccccccc
Confidence            446665544 4667788999888764321111111    1123356666543 33332211     11234667776654


Q ss_pred             cEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEE
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      .-..  ..   ..  .  ...-.++.+  +|....+.+...     ..|..||+.+.+.........      ..+..+.
T Consensus       137 ~~~~--~l---~~--h--~~~v~~v~~~~~~~~~l~sgs~d-----~~i~i~d~~~~~~~~~~~~~~------~~i~~v~  196 (311)
T d1nr0a1         137 TSNG--NL---TG--Q--ARAMNSVDFKPSRPFRIISGSDD-----NTVAIFEGPPFKFKSTFGEHT------KFVHSVR  196 (311)
T ss_dssp             CBCB--CC---CC--C--SSCEEEEEECSSSSCEEEEEETT-----SCEEEEETTTBEEEEEECCCS------SCEEEEE
T ss_pred             cccc--cc---cc--c--ccccccccccccceeeecccccc-----ccccccccccccccccccccc------ccccccc
Confidence            3211  11   00  0  000112333  455433333222     268899998876654422211      1110233


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CC------ceeEEEEEEeCCCEEEEEeCCCeEEEEECCCC
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NG------YRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMH  333 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~------~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~  333 (378)
                      .. +|.+.+....++.+.+|.+..      +.+...+.. ..      ....-+++.++|..++....++.+..||.+++
T Consensus       197 ~~p~~~~l~~~~~d~~v~~~d~~~------~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~  270 (311)
T d1nr0a1         197 YNPDGSLFASTGGDGTIVLYNGVD------GTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL  270 (311)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTT------CCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cCcccccccccccccccccccccc------ccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC
Confidence            33 677777777777999998765      223333332 11      12455677788997777777778999999999


Q ss_pred             eEEE
Q 044435          334 RVES  337 (378)
Q Consensus       334 ~~~~  337 (378)
                      +..+
T Consensus       271 ~~~~  274 (311)
T d1nr0a1         271 KVEK  274 (311)
T ss_dssp             EEEE
T ss_pred             cEEE
Confidence            8544

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.32  E-value=1.8  Score=36.59  Aligned_cols=142  Identities=9%  Similarity=0.028  Sum_probs=83.0

Q ss_pred             eEEEEEEcCCCcEEecCcccCCCccccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCC
Q 044435          173 IEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFG  249 (378)
Q Consensus       173 ~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~  249 (378)
                      ..+.+|+..++.+..+...   ..  ....  -.++.+  +|.+...+..+      ..|..+|+.+.++... .+....
T Consensus        29 ~~i~iw~~~~~~~~~~~~l---~g--H~~~--V~~l~fsp~~~~l~s~s~D------~~i~vWd~~~~~~~~~~~~~~~~   95 (371)
T d1k8kc_          29 HEVHIYEKSGNKWVQVHEL---KE--HNGQ--VTGVDWAPDSNRIVTCGTD------RNAYVWTLKGRTWKPTLVILRIN   95 (371)
T ss_dssp             SEEEEEEEETTEEEEEEEE---EC--CSSC--EEEEEEETTTTEEEEEETT------SCEEEEEEETTEEEEEEECCCCS
T ss_pred             CEEEEEECCCCCEEEEEEe---cC--CCCC--EEEEEECCCCCEEEEEECC------CeEEEEeeccccccccccccccc
Confidence            4688999888887765433   10  0000  012222  46544444443      2688899988887655 444322


Q ss_pred             CCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEE
Q 044435          250 NEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWY  328 (378)
Q Consensus       250 ~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~y  328 (378)
                      .     .+..+... +|+..++...++.+.+|.++...  ..|..............-+.++++|..++....++.+..|
T Consensus        96 ~-----~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~--~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~  168 (371)
T d1k8kc_          96 R-----AARCVRWAPNEKKFAVGSGSRVISICYFEQEN--DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  168 (371)
T ss_dssp             S-----CEEEEEECTTSSEEEEEETTSSEEEEEEETTT--TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             c-----cccccccccccccceeecccCcceeeeeeccc--ccccccccccccccccccccccccccceeccccCcEEEEE
Confidence            1     11022222 67777777777799999988632  3344444333311124456778889877777777789999


Q ss_pred             ECCCCe
Q 044435          329 HLDMHR  334 (378)
Q Consensus       329 dl~~~~  334 (378)
                      |.....
T Consensus       169 ~~~~~~  174 (371)
T d1k8kc_         169 SAYIKE  174 (371)
T ss_dssp             ECCCTT
T ss_pred             eeccCc
Confidence            887554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.76  E-value=2  Score=34.86  Aligned_cols=202  Identities=11%  Similarity=0.037  Sum_probs=107.8

Q ss_pred             ccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCc
Q 044435          106 CNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNL  184 (378)
Q Consensus       106 ~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~  184 (378)
                      .+|-|.+.+ ...++.++||...-....+...... .......++.++...+.+-++..      .....+.+++.....
T Consensus        32 ~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~-~~~~~p~~~~~~~~~~~~~~~~~------~~~~~i~~~~~~g~~  104 (279)
T d1q7fa_          32 AQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRD-SQLLYPNRVAVVRNSGDIIVTER------SPTHQIQIYNQYGQF  104 (279)
T ss_dssp             TTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSST-TCBSSEEEEEEETTTTEEEEEEC------GGGCEEEEECTTSCE
T ss_pred             CCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCc-ccccccccccccccccccceecc------CCccccccccccccc
Confidence            477777775 5677889998754444444332211 11223334555555444433221      123456777776666


Q ss_pred             EEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-E
Q 044435          185 WRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-L  263 (378)
Q Consensus       185 W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~  263 (378)
                      ++.....       .......-.+.-+|.+|......      ..+..||........+..+.....    .. .++. .
T Consensus       105 ~~~~~~~-------~~~~p~~~avd~~G~i~v~~~~~------~~~~~~~~~g~~~~~~g~~~~~~~----~~-~i~~d~  166 (279)
T d1q7fa_         105 VRKFGAT-------ILQHPRGVTVDNKGRIIVVECKV------MRVIIFDQNGNVLHKFGCSKHLEF----PN-GVVVND  166 (279)
T ss_dssp             EEEECTT-------TCSCEEEEEECTTSCEEEEETTT------TEEEEECTTSCEEEEEECTTTCSS----EE-EEEECS
T ss_pred             eeecCCC-------cccccceeccccCCcEEEEeecc------ceeeEeccCCceeecccccccccc----cc-eeeecc
Confidence            6655332       11111111233468888765543      378999988776666644433221    11 3333 3


Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeC-C-CeEEEEECCCCeEEEEe
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKN-S-KDHCWYHLDMHRVESFL  339 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~-~-~~~~~ydl~~~~~~~v~  339 (378)
                      +|.++++......+.  +.+..+   .+  ...+..  .+....-+++.++|+ |++... . ..+..|+.+.+-.+.+.
T Consensus       167 ~g~i~v~d~~~~~V~--~~d~~G---~~--~~~~g~~g~~~~P~giavD~~G~-i~Vad~~~~~~v~~f~~~G~~~~~~~  238 (279)
T d1q7fa_         167 KQEIFISDNRAHCVK--VFNYEG---QY--LRQIGGEGITNYPIGVGINSNGE-ILIADNHNNFNLTIFTQDGQLISALE  238 (279)
T ss_dssp             SSEEEEEEGGGTEEE--EEETTC---CE--EEEESCTTTSCSEEEEEECTTCC-EEEEECSSSCEEEEECTTSCEEEEEE
T ss_pred             ceeEEeeecccccee--eeecCC---ce--eeeecccccccCCcccccccCCe-EEEEECCCCcEEEEECCCCCEEEEEe
Confidence            688888876544544  444432   23  233433  332344466667888 665543 2 35889998777666664


Q ss_pred             E
Q 044435          340 V  340 (378)
Q Consensus       340 ~  340 (378)
                      .
T Consensus       239 ~  239 (279)
T d1q7fa_         239 S  239 (279)
T ss_dssp             E
T ss_pred             C
Confidence            3

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.23  E-value=3.5  Score=34.38  Aligned_cols=204  Identities=9%  Similarity=-0.046  Sum_probs=94.6

Q ss_pred             EeeeccceEEEeecCCcEEEEcCcccceeec-CCCCCCC-----------CCCCCceeEEeeecCCCCeEEEEEEEecCC
Q 044435          102 IIGSCNGLLALKNYPKGIILLNPLTKKHRVL-PKFYRDL-----------HGDKPSLHGFGYDVGSDDYKLVRIHVFKSP  169 (378)
Q Consensus       102 ~~~s~~GLl~l~~~~~~~~V~NP~t~~~~~L-P~~~~~~-----------~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~  169 (378)
                      +--+.+|-++....+..+.|||..+++...- .......           .........+.+.+. +.+-+.+ .     
T Consensus        68 l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~-~~~l~s~-~-----  140 (388)
T d1erja_          68 VKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD-GKFLATG-A-----  140 (388)
T ss_dssp             EEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTT-SSEEEEE-E-----
T ss_pred             EEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCC-CCcceec-c-----
Confidence            4445577665555566789999888765422 1111000           000112234455443 2332222 1     


Q ss_pred             CcceEEEEEEcCCCcEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCC
Q 044435          170 VYHIEATVYGLKVNLWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFG  249 (378)
Q Consensus       170 ~~~~~~~vyss~~~~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~  249 (378)
                       ....+.+++..++........       ...........-+|.....+...      ..+..+|..+............
T Consensus       141 -~dg~v~i~~~~~~~~~~~~~~-------h~~~v~~~~~~~~~~~~~~~~~~------~~i~~~d~~~~~~~~~~~~~~~  206 (388)
T d1erja_         141 -EDRLIRIWDIENRKIVMILQG-------HEQDIYSLDYFPSGDKLVSGSGD------RTVRIWDLRTGQCSLTLSIEDG  206 (388)
T ss_dssp             -TTSCEEEEETTTTEEEEEECC-------CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEECSSC
T ss_pred             -ccccccccccccccccccccc-------ccccccccccccccccccccccc------eeeeeeeccccccccccccccc
Confidence             123577777776654332111       00000000111233344444333      2788888887665443211111


Q ss_pred             CCCCCcccceEEE--ECCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC---CCceeEEEEEEeCCCEEEEEeCCCe
Q 044435          250 NEGGGGELSGVYV--LKGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE---NGYRVIPLAFSSRGDKVLFQKNSKD  324 (378)
Q Consensus       250 ~~~~~~~~~~l~~--~~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~---~~~~~~~~~~~~~g~~v~~~~~~~~  324 (378)
                            .. .+..  .+|.+.+....++.+.+|.+....  ...........   ......-+.+.++|..++....++.
T Consensus       207 ------~~-~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~--~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~  277 (388)
T d1erja_         207 ------VT-TVAVSPGDGKYIAAGSLDRAVRVWDSETGF--LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS  277 (388)
T ss_dssp             ------EE-EEEECSTTCCEEEEEETTSCEEEEETTTCC--EEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ------cc-cccccCCCCCeEEEEcCCCeEEEeecccCc--cceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc
Confidence                  11 2222  256666666666788888776521  11111111111   1112455677788887777777888


Q ss_pred             EEEEECCCCeE
Q 044435          325 HCWYHLDMHRV  335 (378)
Q Consensus       325 ~~~ydl~~~~~  335 (378)
                      +..||+.+...
T Consensus       278 i~iwd~~~~~~  288 (388)
T d1erja_         278 VKLWNLQNANN  288 (388)
T ss_dssp             EEEEEC-----
T ss_pred             EEEEeccCCcc
Confidence            99999876553

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=91.23  E-value=2.3  Score=33.98  Aligned_cols=94  Identities=14%  Similarity=0.095  Sum_probs=59.6

Q ss_pred             EEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCcee
Q 044435          229 LILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRV  304 (378)
Q Consensus       229 ~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~  304 (378)
                      .|..+|+.+.+.. .++++....        .++.. +|+ |++....++++.+|-+..      ...+.+++. ..  .
T Consensus        13 ~v~v~D~~t~~~~~~i~~g~~p~--------~va~spdG~~l~v~~~~~~~i~v~d~~t------~~~~~~~~~~~~--~   76 (301)
T d1l0qa2          13 NISVIDVTSNKVTATIPVGSNPM--------GAVISPDGTKVYVANAHSNDVSIIDTAT------NNVIATVPAGSS--P   76 (301)
T ss_dssp             EEEEEETTTTEEEEEEECSSSEE--------EEEECTTSSEEEEEEGGGTEEEEEETTT------TEEEEEEECSSS--E
T ss_pred             EEEEEECCCCeEEEEEECCCCce--------EEEEeCCCCEEEEEECCCCEEEEEECCC------Cceeeeeecccc--c
Confidence            7999999988764 346543221        44554 665 666665666899997764      334555655 33  4


Q ss_pred             EEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          305 IPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       305 ~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                      .-+.+..+|..+++... +..+..+|..+++....
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cccccccccccccccccccceeeecccccceeeee
Confidence            45666777876666544 44588889988875443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=91.18  E-value=2.4  Score=34.84  Aligned_cols=113  Identities=10%  Similarity=0.008  Sum_probs=68.4

Q ss_pred             eeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCC
Q 044435          208 AFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYG  286 (378)
Q Consensus       208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~  286 (378)
                      +.=||.||+.....      ..|..+|+..+.-....+|....        .++.. +|+|+++......+.+|.++...
T Consensus        35 v~pdG~l~vt~~~~------~~I~~i~p~g~~~~~~~~~~~~~--------gla~~~dG~l~v~~~~~~~~~~~~~~~~~  100 (302)
T d2p4oa1          35 SAPDGTIFVTNHEV------GEIVSITPDGNQQIHATVEGKVS--------GLAFTSNGDLVATGWNADSIPVVSLVKSD  100 (302)
T ss_dssp             ECTTSCEEEEETTT------TEEEEECTTCCEEEEEECSSEEE--------EEEECTTSCEEEEEECTTSCEEEEEECTT
T ss_pred             ECCCCCEEEEeCCC------CEEEEEeCCCCEEEEEcCCCCcc--------eEEEcCCCCeEEEecCCceEEEEEecccc
Confidence            33478988765544      37999998876554446554321        34443 78999988777766665555422


Q ss_pred             CCcceEEEEEecC-CCceeEEEEEEeCCCEEEEE-eCCCeEEEEECCCCeEEEEe
Q 044435          287 VKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQ-KNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       287 ~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~-~~~~~~~~ydl~~~~~~~v~  339 (378)
                        ..-........ ..  ..-+.+.++|. +++. ....+++.+|+.++......
T Consensus       101 --~~~~~~~~~~~~~~--~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~  150 (302)
T d2p4oa1         101 --GTVETLLTLPDAIF--LNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWL  150 (302)
T ss_dssp             --SCEEEEEECTTCSC--EEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             --cceeeccccCCccc--cceeEEccCCC-EEeeccccccceeeeccCCcceeEe
Confidence              22233333333 22  34455566776 4444 44557999999998877653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=4.2  Score=33.47  Aligned_cols=191  Identities=8%  Similarity=0.030  Sum_probs=96.7

Q ss_pred             eccceEEEe-ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLALK-NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l~-~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +-+|-.++. ..+..+.+||...............    ......+.+++.  ...++...      ....+.+++..++
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~~~~~~~--~~~l~s~~------~d~~i~~~~~~~~  173 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS----APACYALAISPD--SKVCFSCC------SDGNIAVWDLHNQ  173 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS----SSCEEEEEECTT--SSEEEEEE------TTSCEEEEETTTT
T ss_pred             cCCCCEEEEeecccccccccccccccccccccccc----cccccccccccc--cccccccc------ccccccccccccc
Confidence            345554443 4566788898765543333222211    112234444442  22233222      1345777887765


Q ss_pred             cE-EecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCcee-eeecCCCCCCCCCCcccceEE
Q 044435          184 LW-RRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETF-YSMPMPGFGNEGGGGELSGVY  261 (378)
Q Consensus       184 ~W-~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~-~~i~lP~~~~~~~~~~~~~l~  261 (378)
                      .- ......   ..  ...   .-...-+|.....+..+.      .+..+|+.+.+- ..+..+...       . .+.
T Consensus       174 ~~~~~~~~~---~~--~v~---~l~~s~~~~~~~~~~~d~------~v~i~d~~~~~~~~~~~~~~~i-------~-~l~  231 (337)
T d1gxra_         174 TLVRQFQGH---TD--GAS---CIDISNDGTKLWTGGLDN------TVRSWDLREGRQLQQHDFTSQI-------F-SLG  231 (337)
T ss_dssp             EEEEEECCC---SS--CEE---EEEECTTSSEEEEEETTS------EEEEEETTTTEEEEEEECSSCE-------E-EEE
T ss_pred             ccccccccc---cc--ccc---cccccccccccccccccc------cccccccccceeecccccccce-------E-EEE
Confidence            32 222111   00  000   001122455555555442      788899877543 223332211       1 333


Q ss_pred             EE-CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEE
Q 044435          262 VL-KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVE  336 (378)
Q Consensus       262 ~~-~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~  336 (378)
                      .. +|.+.++...++.+.+|.+....   .   . ..........-+.+.++|..++....++.+..||.++++.-
T Consensus       232 ~~~~~~~l~~~~~d~~i~i~d~~~~~---~---~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~  300 (337)
T d1gxra_         232 YCPTGEWLAVGMESSNVEVLHVNKPD---K---Y-QLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI  300 (337)
T ss_dssp             ECTTSSEEEEEETTSCEEEEETTSSC---E---E-EECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEE
T ss_pred             Ecccccccceeccccccccccccccc---c---c-cccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEE
Confidence            33 56666666666789999886521   1   1 11121112556777888987777777778999999887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=89.51  E-value=4.6  Score=33.01  Aligned_cols=180  Identities=7%  Similarity=-0.041  Sum_probs=90.5

Q ss_pred             cEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccCCCcc
Q 044435          118 GIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKNFPYS  197 (378)
Q Consensus       118 ~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~~p~~  197 (378)
                      .+.|+|-.+++...-.  ..+    .-....+.+++. +.|.++....      ...+.+|+.+++.-...-..      
T Consensus       127 ~~~v~~~~~~~~~~~l--~~h----~~~v~~v~~~~~-~~~~l~sgs~------d~~i~i~d~~~~~~~~~~~~------  187 (311)
T d1nr0a1         127 FGHVFLFDTGTSNGNL--TGQ----ARAMNSVDFKPS-RPFRIISGSD------DNTVAIFEGPPFKFKSTFGE------  187 (311)
T ss_dssp             SEEEEETTTCCBCBCC--CCC----SSCEEEEEECSS-SSCEEEEEET------TSCEEEEETTTBEEEEEECC------
T ss_pred             cccccccccccccccc--ccc----cccccccccccc-ceeeeccccc------cccccccccccccccccccc------
Confidence            3567776665533211  111    112334556553 4555554332      23578888876533221110      


Q ss_pred             ccccccCCcceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEEcC
Q 044435          198 WADHSYGGNGAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLCKY  273 (378)
Q Consensus       198 ~~~~~~~~~~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~  273 (378)
                       .  ...-.++.+  +|.+...+..++      .|..+|..+.+-... +.+..........+..+... +|++.+....
T Consensus       188 -~--~~~i~~v~~~p~~~~l~~~~~d~------~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~  258 (311)
T d1nr0a1         188 -H--TKFVHSVRYNPDGSLFASTGGDG------TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASA  258 (311)
T ss_dssp             -C--SSCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEET
T ss_pred             -c--cccccccccCccccccccccccc------cccccccccccccccccccccccccccccccccccCCCCCEEEEEeC
Confidence             0  000012333  566555555442      688999887654332 32221111001112133333 5777666666


Q ss_pred             CCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECC
Q 044435          274 SEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLD  331 (378)
Q Consensus       274 ~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~  331 (378)
                      ++.+.||-+..      -..+..++. .......+++..+++.++....++.+..+|++
T Consensus       259 Dg~v~iwd~~t------~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         259 DKTIKIWNVAT------LKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             TSEEEEEETTT------TEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             CCeEEEEECCC------CcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            67999998764      234455554 22223345565566667777777889998875

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=89.27  E-value=4.8  Score=32.89  Aligned_cols=206  Identities=8%  Similarity=-0.064  Sum_probs=101.5

Q ss_pred             eeccceEEEee-cCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCC
Q 044435          104 GSCNGLLALKN-YPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKV  182 (378)
Q Consensus       104 ~s~~GLl~l~~-~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~  182 (378)
                      +..+|-|.+.+ ...+++.+||.+++....+.+.      .  ..+++.++. +.+ +++ .       ...+..|++.+
T Consensus        26 d~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~------~--~~~i~~~~d-g~l-~va-~-------~~gl~~~d~~t   87 (295)
T d2ghsa1          26 DPASGTAWWFNILERELHELHLASGRKTVHALPF------M--GSALAKISD-SKQ-LIA-S-------DDGLFLRDTAT   87 (295)
T ss_dssp             ETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSS------C--EEEEEEEET-TEE-EEE-E-------TTEEEEEETTT
T ss_pred             ECCCCEEEEEECCCCEEEEEECCCCeEEEEECCC------C--cEEEEEecC-CCE-EEE-E-------eCccEEeeccc
Confidence            44566666665 5667889999998766544322      1  113444433 222 222 1       23588899999


Q ss_pred             CcEEecCcccCCCcccccc--ccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceE
Q 044435          183 NLWRRIKNIKNFPYSWADH--SYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGV  260 (378)
Q Consensus       183 ~~W~~~~~~~~~p~~~~~~--~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l  260 (378)
                      +..+.+...   +.  ...  ......+--+|.+|+-............+..++  .++...+.-+....      - .+
T Consensus        88 g~~~~l~~~---~~--~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~--~g~~~~~~~~~~~~------N-g~  153 (295)
T d2ghsa1          88 GVLTLHAEL---ES--DLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIP------N-SI  153 (295)
T ss_dssp             CCEEEEECS---ST--TCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSE------E-EE
T ss_pred             ceeeEEeee---ec--CCCcccceeeEECCCCCEEEEeccccccccceeEeeec--CCcEEEEeeccCCc------c-ee
Confidence            988877543   22  111  111112334677765543322111112344443  34444432111100      0 23


Q ss_pred             EEE-CC-eEEEEEcCCCcEEEEEeccCCC--CcceEEEEEecCCCceeEEEEEEeCCCEEEEEe-CCCeEEEEECCCCeE
Q 044435          261 YVL-KG-CLSLLCKYSEPWDLWVMKEYGV--KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQK-NSKDHCWYHLDMHRV  335 (378)
Q Consensus       261 ~~~-~G-~L~~~~~~~~~l~iW~l~~~~~--~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~-~~~~~~~ydl~~~~~  335 (378)
                      +.. ++ .|+++......+-...++....  ..........+.......-+++..+|. |.+.. ...++..||++++.+
T Consensus       154 ~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn-lWva~~~~g~V~~~dp~G~~~  232 (295)
T d2ghsa1         154 CFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH-IWNARWGEGAVDRYDTDGNHI  232 (295)
T ss_dssp             EECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC-EEEEEETTTEEEEECTTCCEE
T ss_pred             eecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCC-EEeeeeCCCceEEecCCCcEe
Confidence            333 33 5666665444433333332111  011111222222222244566667888 55554 556799999999999


Q ss_pred             EEEeEeC
Q 044435          336 ESFLVKG  342 (378)
Q Consensus       336 ~~v~~~~  342 (378)
                      +.+.+..
T Consensus       233 ~~i~lP~  239 (295)
T d2ghsa1         233 ARYEVPG  239 (295)
T ss_dssp             EEEECSC
T ss_pred             eEecCCC
Confidence            9997643

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.70  E-value=4.9  Score=32.24  Aligned_cols=113  Identities=11%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             eeeCCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEECCeEEEEEcCCCcEEEEEeccCCC
Q 044435          208 AFVNGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVLKGCLSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       208 v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~~G~L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      ...+|.....+..++      .|..+|+.+.+......... .     .. .....++.+.+....++.+.+|.+.... 
T Consensus       183 ~~~~~~~l~s~~~dg------~i~~~d~~~~~~~~~~~~~~-~-----~v-~~~~~~~~~l~s~s~d~~i~iwd~~~~~-  248 (342)
T d2ovrb2         183 LQFDGIHVVSGSLDT------SIRVWDVETGNCIHTLTGHQ-S-----LT-SGMELKDNILVSGNADSTVKIWDIKTGQ-  248 (342)
T ss_dssp             EEECSSEEEEEETTS------CEEEEETTTCCEEEEECCCC-S-----CE-EEEEEETTEEEEEETTSCEEEEETTTCC-
T ss_pred             ccCCCCEEEEEeCCC------eEEEeecccceeeeEecccc-c-----ce-eEEecCCCEEEEEcCCCEEEEEeccccc-
Confidence            344555544444432      68888887665433211111 1     11 2223355666666666799999877521 


Q ss_pred             CcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE-EEEe
Q 044435          288 KDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV-ESFL  339 (378)
Q Consensus       288 ~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~-~~v~  339 (378)
                           ....+.. ........++..+++.++....++.+..||+++++. +.+.
T Consensus       249 -----~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~  297 (342)
T d2ovrb2         249 -----CLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLV  297 (342)
T ss_dssp             -----EEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             -----ccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEe
Confidence                 2223332 111234455556788777777788899999998764 4443

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.78  E-value=7.4  Score=32.18  Aligned_cols=205  Identities=11%  Similarity=0.043  Sum_probs=97.9

Q ss_pred             eccceEEE-eecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCC
Q 044435          105 SCNGLLAL-KNYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVN  183 (378)
Q Consensus       105 s~~GLl~l-~~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~  183 (378)
                      +-+|-+++ ...+..+.+||..+++.........      .....+.+.+. +.+ ++...      ....+.+++..+.
T Consensus       130 s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~------~~v~~~~~~~~-~~~-~~~~~------~~~~i~~~d~~~~  195 (388)
T d1erja_         130 SPDGKFLATGAEDRLIRIWDIENRKIVMILQGHE------QDIYSLDYFPS-GDK-LVSGS------GDRTVRIWDLRTG  195 (388)
T ss_dssp             CTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS------SCEEEEEECTT-SSE-EEEEE------TTSEEEEEETTTT
T ss_pred             CCCCCcceeccccccccccccccccccccccccc------ccccccccccc-ccc-ccccc------cceeeeeeecccc
Confidence            34555444 3466678899998887665433221      12223333332 222 22221      1345677777665


Q ss_pred             cEEecCcccCCCccccccccCCcceeeCCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEE
Q 044435          184 LWRRIKNIKNFPYSWADHSYGGNGAFVNGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYV  262 (378)
Q Consensus       184 ~W~~~~~~~~~p~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~  262 (378)
                      .-......   ..  ...  ......-+|.+...+..++      .|..+|..+...... ..+..........+..+..
T Consensus       196 ~~~~~~~~---~~--~~~--~~~~~~~~~~~l~~~~~d~------~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~  262 (388)
T d1erja_         196 QCSLTLSI---ED--GVT--TVAVSPGDGKYIAAGSLDR------AVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF  262 (388)
T ss_dssp             EEEEEEEC---SS--CEE--EEEECSTTCCEEEEEETTS------CEEEEETTTCCEEEEEC------CCCSSCEEEEEE
T ss_pred             cccccccc---cc--ccc--cccccCCCCCeEEEEcCCC------eEEEeecccCccceeeccccccccCCCCCEEEEEE
Confidence            33222111   00  000  0000011444444444432      688888887655332 3222111110111213333


Q ss_pred             E-CCeEEEEEcCCCcEEEEEeccCCCC------cceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeE
Q 044435          263 L-KGCLSLLCKYSEPWDLWVMKEYGVK------DSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRV  335 (378)
Q Consensus       263 ~-~G~L~~~~~~~~~l~iW~l~~~~~~------~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~  335 (378)
                      . +|.+.++...++.+.+|.+......      ..+...............+++.++|..|+....++.+..||+++++.
T Consensus       263 s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~  342 (388)
T d1erja_         263 TRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNP  342 (388)
T ss_dssp             CTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcE
Confidence            3 5777777777779999988653211      11222222221111245577778898777777788899999998875


Q ss_pred             E
Q 044435          336 E  336 (378)
Q Consensus       336 ~  336 (378)
                      .
T Consensus       343 ~  343 (388)
T d1erja_         343 L  343 (388)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=86.77  E-value=3.1  Score=33.39  Aligned_cols=116  Identities=7%  Similarity=0.045  Sum_probs=67.6

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCCc
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVKD  289 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~~  289 (378)
                      +|.+...+..++      .|..||+.+++...+....+..     .+..+... +|...++...++.+.+|.+....   
T Consensus       147 ~~~~l~~g~~dg------~i~~~d~~~~~~~~~~~~~~~~-----~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~---  212 (299)
T d1nr0a2         147 DKQFVAVGGQDS------KVHVYKLSGASVSEVKTIVHPA-----EITSVAFSNNGAFLVATDQSRKVIPYSVANNF---  212 (299)
T ss_dssp             TSCEEEEEETTS------EEEEEEEETTEEEEEEEEECSS-----CEEEEEECTTSSEEEEEETTSCEEEEEGGGTT---
T ss_pred             cccccccccccc------cccccccccccccccccccccc-----cccccccccccccccccccccccccccccccc---
Confidence            566555555543      7899999887765542221111     11033333 56666666666789999877521   


Q ss_pred             ceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEeE
Q 044435          290 SWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFLV  340 (378)
Q Consensus       290 ~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~~  340 (378)
                      .......+........-+.+.++|..++....++.+..||+++.+...+..
T Consensus       213 ~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~  263 (299)
T d1nr0a2         213 ELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIII  263 (299)
T ss_dssp             EESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred             cccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEE
Confidence            111111111111124456777899977777777889999999876555533

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=86.76  E-value=6.4  Score=32.07  Aligned_cols=51  Identities=12%  Similarity=0.159  Sum_probs=36.0

Q ss_pred             ceee--CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEE
Q 044435          207 GAFV--NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLC  271 (378)
Q Consensus       207 ~v~~--~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~  271 (378)
                      +++.  +|.|||+.-...      .|..+|+.+++.+.+++|....        .++. .+|+|.+..
T Consensus        23 p~wd~~~~~l~wvDi~~~------~I~r~d~~~g~~~~~~~~~~~~--------~i~~~~dg~l~va~   76 (295)
T d2ghsa1          23 PTFDPASGTAWWFNILER------ELHELHLASGRKTVHALPFMGS--------ALAKISDSKQLIAS   76 (295)
T ss_dssp             EEEETTTTEEEEEEGGGT------EEEEEETTTTEEEEEECSSCEE--------EEEEEETTEEEEEE
T ss_pred             CeEECCCCEEEEEECCCC------EEEEEECCCCeEEEEECCCCcE--------EEEEecCCCEEEEE
Confidence            4544  799999876553      8999999999998888886432        2222 467776654

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=84.84  E-value=11  Score=32.40  Aligned_cols=194  Identities=8%  Similarity=-0.099  Sum_probs=100.6

Q ss_pred             ecCCcEEEEcCcccceeecCCCCCCCCCCCCceeEEeeecCCCCeEEEEEEEecCCCcceEEEEEEcCCCcEEecCcccC
Q 044435          114 NYPKGIILLNPLTKKHRVLPKFYRDLHGDKPSLHGFGYDVGSDDYKLVRIHVFKSPVYHIEATVYGLKVNLWRRIKNIKN  193 (378)
Q Consensus       114 ~~~~~~~V~NP~t~~~~~LP~~~~~~~~~~~~~~~~g~d~~~~~ykvv~~~~~~~~~~~~~~~vyss~~~~W~~~~~~~~  193 (378)
                      .....+.|+|+.|++...--+...       ...++.|.|.. +|-++.  .     ....+.+++..++.-......  
T Consensus        39 ~d~g~v~v~D~~t~~v~~~~~~g~-------~~~~v~fSpDG-~~l~~~--s-----~dg~v~~~d~~t~~~~~~~~i--  101 (432)
T d1qksa2          39 RDAGQIALIDGSTYEIKTVLDTGY-------AVHISRLSASG-RYLFVI--G-----RDGKVNMIDLWMKEPTTVAEI--  101 (432)
T ss_dssp             TTTTEEEEEETTTCCEEEEEECSS-------CEEEEEECTTS-CEEEEE--E-----TTSEEEEEETTSSSCCEEEEE--
T ss_pred             cCCCEEEEEECCCCcEEEEEeCCC-------CeeEEEECCCC-CEEEEE--c-----CCCCEEEEEeeCCCceEEEEE--
Confidence            366778999999988764432221       23466776644 333333  2     124688899877654333222  


Q ss_pred             CCccc-cccccCCcceeeCCeE-EEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCC-----CCcccceEEEE-C
Q 044435          194 FPYSW-ADHSYGGNGAFVNGAL-HWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEG-----GGGELSGVYVL-K  264 (378)
Q Consensus       194 ~p~~~-~~~~~~~~~v~~~G~l-yw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~-----~~~~~~~l~~~-~  264 (378)
                       +.+. ......+....-+|+. |..+...      ..|..+|..+.+.... ..+......     ..... .+... +
T Consensus       102 -~~~~~~~~~~~s~~~SpDG~~l~vs~~~~------~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~s~d  173 (432)
T d1qksa2         102 -KIGSEARSIETSKMEGWEDKYAIAGAYWP------PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA-AILASHY  173 (432)
T ss_dssp             -ECCSEEEEEEECCSTTCTTTEEEEEEEET------TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE-EEEECSS
T ss_pred             -ecCCCCCCeEEecccCCCCCEEEEEcCCC------CeEEEEeCccccceeeeccCCccccceeccCCCcee-EEEECCC
Confidence             1100 0000001111236764 4544444      3799999988766544 322111100     01111 22222 4


Q ss_pred             CeEEEEEcC-CCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          265 GCLSLLCKY-SEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       265 G~L~~~~~~-~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                      |...++... .+++.+|...+.    .=.++..|+. ..  ..-+.+.++|..++.... ...+.+.|.++++....
T Consensus       174 g~~~~vs~~~~~~i~~~d~~~~----~~~~~~~i~~g~~--~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~  244 (432)
T d1qksa2         174 RPEFIVNVKETGKILLVDYTDL----NNLKTTEISAERF--LHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI  244 (432)
T ss_dssp             SSEEEEEETTTTEEEEEETTCS----SEEEEEEEECCSS--EEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEEccCCeEEEEEccCC----CcceEEEEcccCc--cccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence            544444433 346666655442    1223445555 44  556788889986666654 34588899998887666

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=84.13  E-value=7  Score=31.50  Aligned_cols=106  Identities=15%  Similarity=0.067  Sum_probs=60.9

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceee-eecCCCCCCCCCCcccceEEEE-CCeE-EEEEcCCCcEEEEEeccCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFY-SMPMPGFGNEGGGGELSGVYVL-KGCL-SLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~-~i~lP~~~~~~~~~~~~~l~~~-~G~L-~~~~~~~~~l~iW~l~~~~~  287 (378)
                      +|.....+..+      ..|..+|+.+.+.. .+.+|......      .++.. +|+. ++....++.+.+|-++.   
T Consensus         7 ~~~~l~~~~~~------~~v~v~D~~t~~~~~t~~~~~~~~p~------~l~~spDG~~l~v~~~~~~~v~~~d~~t---   71 (346)
T d1jmxb_           7 GHEYMIVTNYP------NNLHVVDVASDTVYKSCVMPDKFGPG------TAMMAPDNRTAYVLNNHYGDIYGIDLDT---   71 (346)
T ss_dssp             TCEEEEEEETT------TEEEEEETTTTEEEEEEECSSCCSSC------EEEECTTSSEEEEEETTTTEEEEEETTT---
T ss_pred             CCcEEEEEcCC------CEEEEEECCCCCEEEEEEcCCCCCcc------eEEECCCCCEEEEEECCCCcEEEEeCcc---
Confidence            45555555554      38999999998764 45777543211      44444 6765 44444556888887764   


Q ss_pred             CcceEEEEEecC-CC-----ceeEEEEEEeCCCEEEEEeC------------CCeEEEEECCCCe
Q 044435          288 KDSWSKLFTMNE-NG-----YRVIPLAFSSRGDKVLFQKN------------SKDHCWYHLDMHR  334 (378)
Q Consensus       288 ~~~W~~~~~i~~-~~-----~~~~~~~~~~~g~~v~~~~~------------~~~~~~ydl~~~~  334 (378)
                         ...+..+.. ..     .....+.+.+||..+++...            +..+..+|..+++
T Consensus        72 ---~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          72 ---CKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             ---TEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ---CeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence               344444544 21     01223566678886655432            3346666666554

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.23  E-value=9.3  Score=30.28  Aligned_cols=72  Identities=10%  Similarity=0.040  Sum_probs=43.2

Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCC----cceEEEEEecC-C----CceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCe
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVK----DSWSKLFTMNE-N----GYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHR  334 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~----~~W~~~~~i~~-~----~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~  334 (378)
                      ++...++...++.+.+|.++.....    ..+.....-.. .    .....-++++++|..++-...++.+..+|+++++
T Consensus       205 ~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~  284 (342)
T d1yfqa_         205 EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK  284 (342)
T ss_dssp             GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEeecCCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCc
Confidence            3555566666668888887754221    11211110001 1    1224557888889877777778889999999887


Q ss_pred             E
Q 044435          335 V  335 (378)
Q Consensus       335 ~  335 (378)
                      .
T Consensus       285 ~  285 (342)
T d1yfqa_         285 K  285 (342)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=82.31  E-value=9.3  Score=30.94  Aligned_cols=107  Identities=9%  Similarity=0.028  Sum_probs=64.5

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEEE-CCeEEEEEc-CCC-cEEEEEeccCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYVL-KGCLSLLCK-YSE-PWDLWVMKEYGV  287 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~-~~~-~l~iW~l~~~~~  287 (378)
                      +|++...+..+       .|..+|..++....+  +....      +..+.-+ +|+..++.. .++ .+.+|-++... 
T Consensus        14 dG~~~a~~~~g-------~v~v~d~~~~~~~~~--~~~~~------v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~-   77 (360)
T d1k32a3          14 DGDLIAFVSRG-------QAFIQDVSGTYVLKV--PEPLR------IRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK-   77 (360)
T ss_dssp             GGGCEEEEETT-------EEEEECTTSSBEEEC--SCCSC------EEEEEECSSSEEEEEEEETTEEEEEEEETTTCC-
T ss_pred             CCCEEEEEECC-------eEEEEECCCCcEEEc--cCCCC------EEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc-
Confidence            45555444433       588888887766554  32211      1023332 776655444 443 67788665411 


Q ss_pred             CcceEEEEEecCCCceeEEEEEEeCCCEEEEEeCCCeEEEEECCCCeEEEEe
Q 044435          288 KDSWSKLFTMNENGYRVIPLAFSSRGDKVLFQKNSKDHCWYHLDMHRVESFL  339 (378)
Q Consensus       288 ~~~W~~~~~i~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~ydl~~~~~~~v~  339 (378)
                            ...+.........+++.++|..++....+..+..+++.+.+...+-
T Consensus        78 ------~~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~  123 (360)
T d1k32a3          78 ------AEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIE  123 (360)
T ss_dssp             ------EEECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             ------EEEeeCCCceEEeeeecccccccceeccccccccccccccceeeee
Confidence                  1122221112556788899998888888888999999999987763

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.95  E-value=11  Score=30.14  Aligned_cols=101  Identities=15%  Similarity=0.077  Sum_probs=59.9

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeee-cCCCCCCCCCCcccceEEEE-CCeEEEEEcCCCcEEEEEeccCCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSM-PMPGFGNEGGGGELSGVYVL-KGCLSLLCKYSEPWDLWVMKEYGVK  288 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i-~lP~~~~~~~~~~~~~l~~~-~G~L~~~~~~~~~l~iW~l~~~~~~  288 (378)
                      +|.+...+..+.      .|..+|+........ ..+....     .+..+... +|.+.++...++.+.||-+..    
T Consensus       237 ~~~~l~s~s~d~------~i~~~~~~~~~~~~~~~~~~~~~-----~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~----  301 (340)
T d1tbga_         237 NGNAFATGSDDA------TCRLFDLRADQELMTYSHDNIIC-----GITSVSFSKSGRLLLAGYDDFNCNVWDALK----  301 (340)
T ss_dssp             TSSEEEEEETTS------CEEEEETTTTEEEEEECCTTCCS-----CEEEEEECSSSCEEEEEETTSCEEEEETTT----
T ss_pred             CCCEEEEEeCCC------eEEEEeecccccccccccccccC-----ceEEEEECCCCCEEEEEECCCEEEEEECCC----
Confidence            455555444432      688888876655333 3332221     11023333 577777777777999997654    


Q ss_pred             cceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCCeEEEEE
Q 044435          289 DSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSKDHCWYH  329 (378)
Q Consensus       289 ~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~~~~~yd  329 (378)
                        +..+..+.. .. ...-+++.++|..++-...++.+..+|
T Consensus       302 --~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         302 --ADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             --CCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --CcEEEEEcCCCC-CEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence              455666654 22 255577788888676677777677665

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=81.69  E-value=16  Score=32.93  Aligned_cols=124  Identities=11%  Similarity=0.049  Sum_probs=63.7

Q ss_pred             CCcceeeCCeEEEEeecCCCcccceEEEEEEcCCc--eeeee-cCCCCCCCCCC-cccceEEEECCeEEEEEcCCCcEEE
Q 044435          204 GGNGAFVNGALHWLANQNQDEMINDLILAFDLNIE--TFYSM-PMPGFGNEGGG-GELSGVYVLKGCLSLLCKYSEPWDL  279 (378)
Q Consensus       204 ~~~~v~~~G~lyw~~~~~~~~~~~~~i~~fD~~~~--~~~~i-~lP~~~~~~~~-~~~~~l~~~~G~L~~~~~~~~~l~i  279 (378)
                      +..+++++|.+|.....+       .|.++|..++  .|+.- ..|........ ... .++..+++|++.....   .+
T Consensus        61 ~stPiv~~g~vy~~t~~~-------~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~~~~i~~~t~~~---~l  129 (582)
T d1flga_          61 ESQAIVSDGVIYVTASYS-------RLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIYGDKVFFGTLDA---SV  129 (582)
T ss_dssp             CCCCEEETTEEEEEETTT-------EEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEETTEEEEEETTT---EE
T ss_pred             ccCCEEECCEEEEeCCCC-------eEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEeCCceEEecCCC---eE
Confidence            456899999999876554       7999998764  56543 44543322100 111 3455566666654322   23


Q ss_pred             EEeccCCCCcceEEEEEec-C-CCceeEEEEEEe--CCCEEEEEeC-------CCeEEEEECCCCeEEEE
Q 044435          280 WVMKEYGVKDSWSKLFTMN-E-NGYRVIPLAFSS--RGDKVLFQKN-------SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       280 W~l~~~~~~~~W~~~~~i~-~-~~~~~~~~~~~~--~g~~v~~~~~-------~~~~~~ydl~~~~~~~v  338 (378)
                      ..++-...+..|.....-. . ......|..+.+  .+..+++...       ...++.||.+|++..+-
T Consensus       130 ~alda~tG~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~  199 (582)
T d1flga_         130 VALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWM  199 (582)
T ss_dssp             EEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred             EEecccccceeeeecccCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEE
Confidence            4444332233454321100 0 111122333322  2343444321       23599999999987665

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=81.57  E-value=11  Score=30.08  Aligned_cols=105  Identities=11%  Similarity=0.022  Sum_probs=60.3

Q ss_pred             EEEEeecCCCcccceEEEEEEcCCc-ee---eeecCCCCCCCCCCcccceEEEE-CCe-EEEEEcCCCcEEEEEeccCCC
Q 044435          214 LHWLANQNQDEMINDLILAFDLNIE-TF---YSMPMPGFGNEGGGGELSGVYVL-KGC-LSLLCKYSEPWDLWVMKEYGV  287 (378)
Q Consensus       214 lyw~~~~~~~~~~~~~i~~fD~~~~-~~---~~i~lP~~~~~~~~~~~~~l~~~-~G~-L~~~~~~~~~l~iW~l~~~~~  287 (378)
                      +|..+..++      .|..||+.++ ..   +.++.|....        .|+.. +|+ |++....++.+.+|.++..+ 
T Consensus         6 v~v~~~~~~------~I~v~~~~~~~~l~~~~~~~~~~~v~--------~la~spDG~~L~v~~~~d~~i~~~~i~~~~-   70 (333)
T d1ri6a_           6 VYIASPESQ------QIHVWNLNHEGALTLTQVVDVPGQVQ--------PMVVSPDKRYLYVGVRPEFRVLAYRIAPDD-   70 (333)
T ss_dssp             EEEEEGGGT------EEEEEEECTTSCEEEEEEEECSSCCC--------CEEECTTSSEEEEEETTTTEEEEEEECTTT-
T ss_pred             EEEECCCCC------cEEEEEEcCCCCeEEEEEEcCCCCEe--------EEEEeCCCCEEEEEECCCCeEEEEEEeCCC-
Confidence            455554443      6777877542 22   3345554332        34444 665 65555556699999988632 


Q ss_pred             CcceEEE--EEecC-CCceeEEEEEEeCCCEEEEEeC-CCeEEEEECCCCeEEEE
Q 044435          288 KDSWSKL--FTMNE-NGYRVIPLAFSSRGDKVLFQKN-SKDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~~~--~~i~~-~~~~~~~~~~~~~g~~v~~~~~-~~~~~~ydl~~~~~~~v  338 (378)
                         +...  ..... ..  ..-+++.++|+.++.... +..+..++.+.......
T Consensus        71 ---~~~~~~~~~~~~~~--p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~  120 (333)
T d1ri6a_          71 ---GALTFAAESALPGS--LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGV  120 (333)
T ss_dssp             ---CCEEEEEEEECSSC--CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEE
T ss_pred             ---CcEEEeeecccCCC--ceEEEEcCCCCEEeecccCCCceeeeccccccceec
Confidence               3322  22333 22  223778889997777764 44577787776665444

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=81.07  E-value=13  Score=30.65  Aligned_cols=67  Identities=7%  Similarity=-0.021  Sum_probs=41.7

Q ss_pred             CCeEEEEEcCCCcEEEEEeccCCCCcceEEEEEecC-CCceeEEEEEEeCCCEEEEEeCCC--eEEEEECCCCeEEEE
Q 044435          264 KGCLSLLCKYSEPWDLWVMKEYGVKDSWSKLFTMNE-NGYRVIPLAFSSRGDKVLFQKNSK--DHCWYHLDMHRVESF  338 (378)
Q Consensus       264 ~G~L~~~~~~~~~l~iW~l~~~~~~~~W~~~~~i~~-~~~~~~~~~~~~~g~~v~~~~~~~--~~~~ydl~~~~~~~v  338 (378)
                      +|...+....++.+.+|-+...      ..+..+.. .. ...-+.+.++|. ++....++  .++.++..+.+++..
T Consensus       212 ~g~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~-~v~s~~fs~d~~-~la~g~d~~~~~~~~~~~~~~~~~~  281 (371)
T d1k8kc_         212 NGSRVAWVSHDSTVCLADADKK------MAVATLASETL-PLLAVTFITESS-LVAAGHDCFPVLFTYDSAAGKLSFG  281 (371)
T ss_dssp             SSSEEEEEETTTEEEEEEGGGT------TEEEEEECSSC-CEEEEEEEETTE-EEEEETTSSCEEEEEETTTTEEEEC
T ss_pred             ccccccccccCCcceEEeeecc------cceeeeecccc-cceeeeecCCCC-EEEEEcCCceEEEEeeCCCceEEEe
Confidence            5666555556679999988752      23344444 22 244567778887 44555454  377788888887754

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=80.95  E-value=13  Score=30.40  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=61.5

Q ss_pred             CCeEEEEeecCCCcccceEEEEEEcCCceeeeecCCCCCCCCCCcccceEEE-ECCeEEEEEcCCC--cEEEEEeccCCC
Q 044435          211 NGALHWLANQNQDEMINDLILAFDLNIETFYSMPMPGFGNEGGGGELSGVYV-LKGCLSLLCKYSE--PWDLWVMKEYGV  287 (378)
Q Consensus       211 ~G~lyw~~~~~~~~~~~~~i~~fD~~~~~~~~i~lP~~~~~~~~~~~~~l~~-~~G~L~~~~~~~~--~l~iW~l~~~~~  287 (378)
                      +|.|||.....      ..|..+|+.++.......+.....     . .++. .+|+|+++.....  ...+..++....
T Consensus        50 ~G~Ly~~D~~~------g~I~ri~p~g~~~~~~~~~~~~~p-----~-gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          50 QGQLFLLDVFE------GNIFKINPETKEIKRPFVSHKANP-----A-AIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             TSCEEEEETTT------CEEEEECTTTCCEEEEEECSSSSE-----E-EEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CCCEEEEECCC------CEEEEEECCCCeEEEEEeCCCCCe-----e-EEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            68999986544      379999998876555433322210     1 3344 3789988875432  445656654322


Q ss_pred             CcceEEEEEecC--CCceeEEEEEEeCCCEEEEEeCC-------CeEEEEECCCCeEEEE
Q 044435          288 KDSWSKLFTMNE--NGYRVIPLAFSSRGDKVLFQKNS-------KDHCWYHLDMHRVESF  338 (378)
Q Consensus       288 ~~~W~~~~~i~~--~~~~~~~~~~~~~g~~v~~~~~~-------~~~~~ydl~~~~~~~v  338 (378)
                        .....  +..  ......-+.+.++|. +++....       ..++.++++.+.++.+
T Consensus       118 --~~~~~--~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~  172 (319)
T d2dg1a1         118 --NLQDI--IEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPI  172 (319)
T ss_dssp             --SCEEE--ECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEE
T ss_pred             --eeeee--ccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEE
Confidence              11111  111  222234456666777 5554321       2377778877777665