Citrus Sinensis ID: 044448

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
MSRTSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
ccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEccEEEcccccHHHHHHHHHccccEEEEEccccccccccEEcccccccccEEEEEEEccccccccccccEEEEEcccccccccccEEEEEEcccccccccccccccccc
cccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccEEcccccccccccEcccEcHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHcccccccEcHHHHHHHHHHHccccccccccccEEEccccccccccccccccEcccEEEEcccccHHHHHHHHHHccEEEccccHHHHcccccEEcccccccccEEEEEEEEEEEcccEccEEEEEEEccEcccccEccEEEEEcccccccHHHcccccEEEE
msrtshktgniaAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLAsytgykppptdhphsnrsnwfknlnsskmsfydsidwnergavtpvkdqgsyccWAFTAVATVEGLnkirtgqlvtrskhqlvdcstlnGCAKNFLENAFEYIRQYQRLAsecvypyqgrqdyycdwwrssasgkygairgyqyvqpateeglqdvvsrqpvsvaidatwfnfyhggvftgpcgntpnhgvtivgygttteaegqqpywlvknrwgtnwdeggsmrifrgvggsglcniaanaaypl
msrtshktgniaakheqwMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGykppptdhphsnrSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
MSRTSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
**************HEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGY**************WFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWD***************************
********GNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTG*********************SSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
**********IAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
******KTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGYK*****************LNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
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MSRTSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query308 2.2.26 [Sep-21-2011]
A5HII1380 Actinidain OS=Actinidia d N/A no 0.948 0.768 0.393 2e-54
Q9FGR9361 KDEL-tailed cysteine endo no no 0.870 0.742 0.426 4e-54
O23791351 Fruit bromelain OS=Ananas N/A no 0.918 0.806 0.380 2e-53
P00785380 Actinidain OS=Actinidia c N/A no 0.948 0.768 0.390 3e-53
P25250373 Cysteine proteinase EP-B N/A no 0.931 0.769 0.403 5e-53
P80884345 Ananain OS=Ananas comosus N/A no 0.918 0.820 0.383 9e-53
P25249371 Cysteine proteinase EP-B N/A no 0.931 0.773 0.403 9e-53
P25776 458 Oryzain alpha chain OS=Or no no 0.918 0.617 0.386 3e-52
Q9SUT0364 Probable cysteine protein no no 0.922 0.780 0.407 3e-52
P25803362 Vignain OS=Phaseolus vulg N/A no 0.876 0.745 0.41 2e-51
>sp|A5HII1|ACTN_ACTDE Actinidain OS=Actinidia deliciosa PE=1 SV=1 Back     alignment and function desciption
 Score =  213 bits (541), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/325 (39%), Positives = 175/325 (53%), Gaps = 33/325 (10%)

Query: 4   TSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLR-------------LNK 50
           T      + A +E W++++ ++Y    E E RF+IFK+   F+              LN+
Sbjct: 31  TQRTNDEVKAMYESWLIKYGKSYNSLGEWERRFEIFKETLRFIDEHNADTNRSYKVGLNQ 90

Query: 51  FADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQ 110
           FADLT E+F ++Y G+         SNR   ++      +  Y  +DW   GAV  +K Q
Sbjct: 91  FADLTDEEFRSTYLGFTSGSNKTKVSNR---YEPRVGQVLPSY--VDWRSAGAVVDIKSQ 145

Query: 111 GSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TLNGCAKNFLENAFEYIR 165
           G  C  CWAF+A+ATVEG+NKI TG L++ S+ +L+DC       GC   ++ + F++I 
Sbjct: 146 GE-CGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGRTQNTRGCNGGYITDGFQFII 204

Query: 166 QYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSV 225
               + +E  YPY   QD  C+      + KY  I  Y+ V    E  LQ  V+ QPVSV
Sbjct: 205 NNGGINTEENYPYTA-QDGECNL--DLQNEKYVTIDTYENVPYNNEWALQTAVTYQPVSV 261

Query: 226 AIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEG 283
           A+DA    F  Y  G+FTGPCG   +H VTIVGYGT    EG   YW+VKN W T W E 
Sbjct: 262 ALDAAGDAFKHYSSGIFTGPCGTAIDHAVTIVGYGT----EGGIDYWIVKNSWDTTWGEE 317

Query: 284 GSMRIFRGVGGSGLCNIAANAAYPL 308
           G MRI R VGG+G C IA   +YP+
Sbjct: 318 GYMRILRNVGGAGTCGIATMPSYPV 342
Cysteine protease responsible for the cleavage of kiwellin into kissper and KiTH.
Actinidia deliciosa (taxid: 3627)
EC: 3EC: .EC: 4EC: .EC: 2EC: 2EC: .EC: 1EC: 4
>sp|Q9FGR9|CEP1_ARATH KDEL-tailed cysteine endopeptidase CEP1 OS=Arabidopsis thaliana GN=CEP1 PE=2 SV=1 Back     alignment and function description
>sp|O23791|BROM1_ANACO Fruit bromelain OS=Ananas comosus PE=1 SV=1 Back     alignment and function description
>sp|P00785|ACTN_ACTCH Actinidain OS=Actinidia chinensis PE=1 SV=4 Back     alignment and function description
>sp|P25250|CYSP2_HORVU Cysteine proteinase EP-B 2 OS=Hordeum vulgare GN=EPB2 PE=1 SV=1 Back     alignment and function description
>sp|P80884|ANAN_ANACO Ananain OS=Ananas comosus GN=AN1 PE=1 SV=2 Back     alignment and function description
>sp|P25249|CYSP1_HORVU Cysteine proteinase EP-B 1 OS=Hordeum vulgare GN=EPB1 PE=2 SV=1 Back     alignment and function description
>sp|P25776|ORYA_ORYSJ Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2 Back     alignment and function description
>sp|Q9SUT0|CPR3_ARATH Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1 Back     alignment and function description
>sp|P25803|CYSEP_PHAVU Vignain OS=Phaseolus vulgaris PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
319826926363 cysteine protease [Lactuca sativa] 0.967 0.820 0.433 2e-65
255564910341 cysteine protease, putative [Ricinus com 0.954 0.862 0.441 4e-65
356515050344 PREDICTED: vignain-like [Glycine max] 0.970 0.869 0.441 4e-65
357474527345 Cysteine protease [Medicago truncatula] 0.951 0.849 0.446 7e-64
255564908342 cysteine protease, putative [Ricinus com 0.957 0.862 0.435 7e-64
356521444340 PREDICTED: thiol protease SEN102-like [G 0.948 0.858 0.474 1e-63
356515048350 PREDICTED: vignain-like [Glycine max] 0.957 0.842 0.432 3e-63
242070333351 hypothetical protein SORBIDRAFT_05g00553 0.944 0.829 0.432 5e-63
357474573345 Cysteine proteinase EP-B [Medicago trunc 0.957 0.855 0.440 8e-63
255563110344 cysteine protease, putative [Ricinus com 0.964 0.863 0.426 2e-62
>gi|319826926|gb|ADV74756.1| cysteine protease [Lactuca sativa] Back     alignment and taxonomy information
 Score =  255 bits (652), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 143/330 (43%), Positives = 194/330 (58%), Gaps = 32/330 (9%)

Query: 2   SRTSHKTGN---IAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF------------- 45
           SR + +T N   + A+HEQWM    R Y D+ EK++RF+IFK N  +             
Sbjct: 39  SRATSRTLNDPTMIARHEQWMAHHGRIYTDENEKQLRFQIFKNNVAYIDAHNARSDQSYT 98

Query: 46  LRLNKFADLTREKFLASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVT 105
           L +NKFADLT ++F AS  GYK  P    H   S  F+  N S +   D +DW + GAVT
Sbjct: 99  LEVNKFADLTNDEFRASRNGYKKQPDSDSHV-VSGLFRYANVSAVP--DEVDWRKEGAVT 155

Query: 106 PVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCS---TLNGCAKNFLENAF 161
           PVKDQG   CCWAF+AVA +EG+NK+  G+LV+ S+ +LVDC       GC    +ENAF
Sbjct: 156 PVKDQGDCGCCWAFSAVAAMEGINKLENGKLVSLSEQELVDCDIDGIDQGCEGGLMENAF 215

Query: 162 EYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQ 221
           ++I + + LA+E VYPY G +D  C+  +++       I G++ V    E+ L   V+ Q
Sbjct: 216 QFIEKRKGLAAESVYPYTG-EDGICNTKKAAIPA--AKISGHEKVPANNEKALLQAVANQ 272

Query: 222 PVSVAIDATW--FNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTN 279
           PVS+AIDA+   F FY GGVFTG CG   +H +T VGYG T +      YWL+KN WG +
Sbjct: 273 PVSIAIDASGYEFQFYSGGVFTGSCGTELDHAITAVGYGATMDG---TKYWLMKNSWGAS 329

Query: 280 WDEGGSMRIFR-GVGGSGLCNIAANAAYPL 308
           W E G +RI R  +   GLC IA + +YP+
Sbjct: 330 WGENGYIRIKRDSLAKEGLCGIAMDPSYPV 359

Source: Lactuca sativa

Species: Lactuca sativa

Genus: Lactuca

Family: Asteraceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255564910|ref|XP_002523448.1| cysteine protease, putative [Ricinus communis] gi|223537276|gb|EEF38907.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356515050|ref|XP_003526214.1| PREDICTED: vignain-like [Glycine max] Back     alignment and taxonomy information
>gi|357474527|ref|XP_003607548.1| Cysteine protease [Medicago truncatula] gi|358347211|ref|XP_003637653.1| Cysteine protease [Medicago truncatula] gi|355503588|gb|AES84791.1| Cysteine protease [Medicago truncatula] gi|355508603|gb|AES89745.1| Cysteine protease [Medicago truncatula] Back     alignment and taxonomy information
>gi|255564908|ref|XP_002523447.1| cysteine protease, putative [Ricinus communis] gi|223537275|gb|EEF38906.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356521444|ref|XP_003529366.1| PREDICTED: thiol protease SEN102-like [Glycine max] Back     alignment and taxonomy information
>gi|356515048|ref|XP_003526213.1| PREDICTED: vignain-like [Glycine max] Back     alignment and taxonomy information
>gi|242070333|ref|XP_002450443.1| hypothetical protein SORBIDRAFT_05g005530 [Sorghum bicolor] gi|241936286|gb|EES09431.1| hypothetical protein SORBIDRAFT_05g005530 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|357474573|ref|XP_003607571.1| Cysteine proteinase EP-B [Medicago truncatula] gi|34329348|gb|AAQ63885.1| putative cysteine proteinase [Medicago truncatula] gi|355508626|gb|AES89768.1| Cysteine proteinase EP-B [Medicago truncatula] Back     alignment and taxonomy information
>gi|255563110|ref|XP_002522559.1| cysteine protease, putative [Ricinus communis] gi|223538250|gb|EEF39859.1| cysteine protease, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query308
TAIR|locus:2029924355 AT1G29090 [Arabidopsis thalian 0.961 0.833 0.430 2.5e-58
TAIR|locus:2082881341 AT3G49340 [Arabidopsis thalian 0.918 0.829 0.438 4e-58
TAIR|locus:2055440345 AT2G34080 [Arabidopsis thalian 0.967 0.863 0.440 1.7e-57
TAIR|locus:2029934346 AT1G29080 [Arabidopsis thalian 0.964 0.858 0.410 3.7e-55
TAIR|locus:2152445346 SAG12 "senescence-associated g 0.935 0.832 0.404 3.7e-55
TAIR|locus:2038515343 AT1G06260 [Arabidopsis thalian 0.931 0.836 0.408 2.4e-53
TAIR|locus:2157712361 CEP1 "cysteine endopeptidase 1 0.915 0.781 0.416 2.1e-52
TAIR|locus:2090614 452 AT3G19390 [Arabidopsis thalian 0.957 0.652 0.380 4.4e-52
TAIR|locus:505006391364 CEP3 "cysteine endopeptidase 3 0.844 0.714 0.438 1.1e-50
TAIR|locus:2128253371 AT4G11320 [Arabidopsis thalian 0.918 0.762 0.402 4.6e-50
TAIR|locus:2029924 AT1G29090 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 599 (215.9 bits), Expect = 2.5e-58, P = 2.5e-58
 Identities = 143/332 (43%), Positives = 189/332 (56%)

Query:     2 SRTSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEFLR-------------L 48
             SR +     +A  H+QWM  F+R Y D+ EK+MRF +FKKN +F+              +
Sbjct:    34 SRVTFHEPIVAEHHQQWMTRFSRVYSDELEKQMRFDVFKKNLKFIEKFNKKGDRTYKLGV 93

Query:    49 NKFADLTREKFLASYTGYKP----PPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAV 104
             N+FAD TRE+F+A++TG K     P ++       +W  N N S ++  ++ DW   GAV
Sbjct:    94 NEFADWTREEFIATHTGLKGVNGIPSSEFVDEMIPSW--NWNVSDVAGRETKDWRYEGAV 151

Query:   105 TPVKDQGSY-CCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTL--NGCAKNFLENAF 161
             TPVK QG   CCWAF++VA VEGL KI    LV+ S+ QL+DC     NGC    + +AF
Sbjct:   152 TPVKYQGQCGCCWAFSSVAAVEGLTKIVGNNLVSLSEQQLLDCDRERDNGCNGGIMSDAF 211

Query:   162 EYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGA-IRGYQYVQPATEEGLQDVVSR 220
              YI + + +ASE  YPYQ  +   C +     +GK  A IRG+Q V    E  L + VS+
Sbjct:   212 SYIIKNRGIASEASYPYQAAEGT-CRY-----NGKPSAWIRGFQTVPSNNERALLEAVSK 265

Query:   221 QPVSVAIDATWFNFYH--GGVFTGP-CGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWG 277
             QPVSV+IDA    F H  GGV+  P CG   NH VT VGYGT+ E  G + YWL KN WG
Sbjct:   266 QPVSVSIDADGPGFMHYSGGVYDEPYCGTNVNHAVTFVGYGTSPE--GIK-YWLAKNSWG 322

Query:   278 TNWDEGGSMRIFRGVGG-SGLCNIAANAAYPL 308
               W E G +RI R V    G+C +A  A YP+
Sbjct:   323 ETWGENGYIRIRRDVAWPQGMCGVAQYAFYPV 354
GO:0005576 "extracellular region" evidence=ISM
GO:0006508 "proteolysis" evidence=IEA;ISS
GO:0008234 "cysteine-type peptidase activity" evidence=IEA;ISS
TAIR|locus:2082881 AT3G49340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2055440 AT2G34080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2029934 AT1G29080 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152445 SAG12 "senescence-associated gene 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2038515 AT1G06260 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157712 CEP1 "cysteine endopeptidase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2090614 AT3G19390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006391 CEP3 "cysteine endopeptidase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128253 AT4G11320 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9GLE3CATK_PIG3, ., 4, ., 2, 2, ., 3, 80.34920.90250.8424yesno
P43236CATK_RABIT3, ., 4, ., 2, 2, ., 3, 80.34280.90250.8449yesno
P25774CATS_HUMAN3, ., 4, ., 2, 2, ., 2, 70.33330.90900.8459yesno
Q8HY81CATS_CANFA3, ., 4, ., 2, 2, ., 2, 70.33630.91880.8549yesno
Q23894CYSP3_DICDI3, ., 4, ., 2, 2, ., -0.33440.90900.8308yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.4.220.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
Sb05g005530.1
hypothetical protein (351 aa)
(Sorghum bicolor)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
pfam00112213 pfam00112, Peptidase_C1, Papain family cysteine pr 2e-71
cd02248210 cd02248, Peptidase_C1A, Peptidase C1A subfamily (M 5e-70
smart00645175 smart00645, Pept_C1, Papain family cysteine protea 1e-54
PTZ00200448 PTZ00200, PTZ00200, cysteine proteinase; Provision 8e-51
PTZ00021489 PTZ00021, PTZ00021, falcipain-2; Provisional 3e-43
PTZ00203348 PTZ00203, PTZ00203, cathepsin L protease; Provisio 3e-43
cd02698239 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; th 2e-18
cd02619223 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS 1e-17
cd02621243 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; al 4e-17
cd02620236 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B gro 2e-13
smart0084857 smart00848, Inhibitor_I29, Cathepsin propeptide in 7e-11
pfam0824658 pfam08246, Inhibitor_I29, Cathepsin propeptide inh 5e-10
PTZ00049693 PTZ00049, PTZ00049, cathepsin C-like protein; Prov 8e-08
COG4870372 COG4870, COG4870, Cysteine protease [Posttranslati 5e-07
PTZ00462 1004 PTZ00462, PTZ00462, Serine-repeat antigen protein; 1e-06
PTZ00364548 PTZ00364, PTZ00364, dipeptidyl-peptidase I precurs 8e-06
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease Back     alignment and domain information 
 Score =  219 bits (560), Expect = 2e-71
 Identities = 105/222 (47%), Positives = 129/222 (58%), Gaps = 18/222 (8%)

Query: 94  DSIDWNERGAVTPVKDQGSYC--CWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN- 150
           +S DW E+GAVTPVKDQG  C  CWAF+AV  +EG   I+TG+LV+ S+ QLVDC T N 
Sbjct: 3   ESFDWREKGAVTPVKDQGQ-CGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDTGNN 61

Query: 151 GCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPAT 210
           GC     +NAFEYI++   + +E  YPY    D  C      ++ KY  I+GY  V    
Sbjct: 62  GCNGGLPDNAFEYIKKNGGIVTESDYPYTAH-DGTCK--FKKSNSKYAKIKGYGDVPYND 118

Query: 211 EEGLQ-DVVSRQPVSVAIDATW--FNFYHGGVFTGP-CGNTPNHGVTIVGYGTTTEAEGQ 266
           EE LQ  +    PVSVAIDA    F  Y  GV+    C    +H V IVGYGT    E  
Sbjct: 119 EEALQAALAKNGPVSVAIDAYEDDFQLYKSGVYKHTECSGELDHAVLIVGYGT----ENG 174

Query: 267 QPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
            PYW+VKN WGT+W E G  RI RGV     C IA+ A+YP+
Sbjct: 175 VPYWIVKNSWGTDWGENGYFRIARGV---NECGIASEASYPI 213

Length = 213
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease Back     alignment and domain information
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional Back     alignment and domain information
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional Back     alignment and domain information
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional Back     alignment and domain information
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional Back     alignment and domain information
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 308
KOG1542372 consensus Cysteine proteinase Cathepsin F [Posttra 100.0
PTZ00203348 cathepsin L protease; Provisional 100.0
PTZ00021489 falcipain-2; Provisional 100.0
PTZ00200448 cysteine proteinase; Provisional 100.0
KOG1543325 consensus Cysteine proteinase Cathepsin L [Posttra 100.0
cd02698239 Peptidase_C1A_CathepsinX Cathepsin X; the only pap 100.0
cd02621243 Peptidase_C1A_CathepsinC Cathepsin C; also known a 100.0
cd02248210 Peptidase_C1A Peptidase C1A subfamily (MEROPS data 100.0
cd02620236 Peptidase_C1A_CathepsinB Cathepsin B group; compos 100.0
PF00112219 Peptidase_C1: Papain family cysteine protease This 100.0
PTZ00049693 cathepsin C-like protein; Provisional 100.0
PTZ00364548 dipeptidyl-peptidase I precursor; Provisional 100.0
smart00645174 Pept_C1 Papain family cysteine protease. 100.0
cd02619223 Peptidase_C1 C1 Peptidase family (MEROPS database 100.0
PTZ00462 1004 Serine-repeat antigen protein; Provisional 100.0
KOG1544470 consensus Predicted cysteine proteinase TIN-ag [Ge 100.0
COG4870372 Cysteine protease [Posttranslational modification, 99.96
cd00585437 Peptidase_C1B Peptidase C1B subfamily (MEROPS data 99.92
PF03051438 Peptidase_C1_2: Peptidase C1-like family This fami 99.74
PF0824658 Inhibitor_I29: Cathepsin propeptide inhibitor doma 99.41
smart0084857 Inhibitor_I29 Cathepsin propeptide inhibitor domai 99.1
COG3579444 PepC Aminopeptidase C [Amino acid transport and me 98.96
KOG4128 457 consensus Bleomycin hydrolases and aminopeptidases 97.91
PF13529144 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3 96.87
PF05543175 Peptidase_C47: Staphopain peptidase C47; InterPro: 93.97
PF14399 317 Transpep_BrtH: NlpC/p60-like transpeptidase 91.19
COG4990195 Uncharacterized protein conserved in bacteria [Fun 84.98
PF09778212 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IP 83.12
>KOG1542 consensus Cysteine proteinase Cathepsin F [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-82  Score=569.19  Aligned_cols=284  Identities=36%  Similarity=0.669  Sum_probs=250.3

Q ss_pred             hHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH-------------hcCCCCCCCCHHHHHhhhcCCCCCCCCCCC
Q 044448            9 GNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF-------------LRLNKFADLTREKFLASYTGYKPPPTDHPH   75 (308)
Q Consensus         9 ~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~N~~~-------------~g~N~fsDlt~eEf~~~~~~~~~~~~~~~~   75 (308)
                      ..+.+.|..|+.+|+|+|.+.+|...|+.||++|+..             +|+|+|||||+|||++++++.+......+.
T Consensus        65 l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~~~~~~~  144 (372)
T KOG1542|consen   65 LGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRRGSKLPG  144 (372)
T ss_pred             cchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccccccCcc
Confidence            4568899999999999999999999999999999987             899999999999999999876653111110


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCCCCCCccCCCCC-CchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhcCC-CCCCC
Q 044448           76 SNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGS-YCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCST-LNGCA  153 (308)
Q Consensus        76 ~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pv~dQg~-gsCwAfa~~~~~e~~~~i~~~~~~~lS~q~l~dc~~-~~gC~  153 (308)
                      .. .. ..  ......||++||||++|.||||||||+ |||||||+|+++|+++.|++|++++||||||+||+. ++||+
T Consensus       145 ~~-~~-~~--~~~~~~lP~~fDWR~kgaVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeLvDCD~~d~gC~  220 (372)
T KOG1542|consen  145 DA-AE-AP--IEPGESLPESFDWRDKGAVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQELVDCDSCDNGCN  220 (372)
T ss_pred             cc-cc-Cc--CCCCCCCCcccchhccCCccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhhhcccCcCCcCC
Confidence            00 00 11  112236999999999999999999999 999999999999999999999999999999999999 99999


Q ss_pred             CCcHHHHHHHHHHcCCCCCCCCcCCCCCCCC-CCcccccCCCCccEEEeeeEEcCCCCHHHHHHHHh-cCCeEEEEecCc
Q 044448          154 KNFLENAFEYIRQYQRLASECVYPYQGRQDY-YCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVS-RQPVSVAIDATW  231 (308)
Q Consensus       154 GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~-~C~~~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~gPV~v~i~~~~  231 (308)
                      ||.+.+|++|+++.+|+..|.+|||++ ..+ .|.  .+ .....+.|++|..++ .||++|.+.|. +|||+|+|++..
T Consensus       221 GGl~~nA~~~~~~~gGL~~E~dYPY~g-~~~~~C~--~~-~~~~~v~I~~f~~l~-~nE~~ia~wLv~~GPi~vgiNa~~  295 (372)
T KOG1542|consen  221 GGLMDNAFKYIKKAGGLEKEKDYPYTG-KKGNQCH--FD-KSKIVVSIKDFSMLS-NNEDQIAAWLVTFGPLSVGINAKP  295 (372)
T ss_pred             CCChhHHHHHHHHhCCccccccCCccc-cCCCccc--cc-hhhceEEEeccEecC-CCHHHHHHHHHhcCCeEEEEchHH
Confidence            999999999988888999999999999 777 999  66 567889999999998 69999999888 699999999779


Q ss_pred             ccccCCceEeC--C-CCCC-CCeEEEEEEeCCcCCCCCCCCeEEEecCCCCCcCCCceEEEEeCCCCCCCcccccccccc
Q 044448          232 FNFYHGGVFTG--P-CGNT-PNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYP  307 (308)
Q Consensus       232 f~~y~~Giy~~--~-c~~~-~~Hav~iVGyg~~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~Cgi~~~~~yp  307 (308)
                      +|+|++||+.+  . |+.. ++|||+|||||.+.  - .++|||||||||++|||+||+|+.||.   |.|||+++++-+
T Consensus       296 mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g--~-~~PYWIVKNSWG~~WGE~GY~~l~RG~---N~CGi~~mvss~  369 (372)
T KOG1542|consen  296 MQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSG--Y-EKPYWIVKNSWGTSWGEKGYYKLCRGS---NACGIADMVSSA  369 (372)
T ss_pred             HHHhcccccCCCcccCCccccCceEEEEeecCCC--C-CCceEEEECCccccccccceEEEeccc---cccccccchhhh
Confidence            99999999988  3 9875 99999999999973  2 589999999999999999999999997   789999998754

>PTZ00203 cathepsin L protease; Provisional Back     alignment and domain information
>PTZ00021 falcipain-2; Provisional Back     alignment and domain information
>PTZ00200 cysteine proteinase; Provisional Back     alignment and domain information
>KOG1543 consensus Cysteine proteinase Cathepsin L [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity Back     alignment and domain information
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access Back     alignment and domain information
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W) Back     alignment and domain information
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag) Back     alignment and domain information
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification Back     alignment and domain information
>PTZ00049 cathepsin C-like protein; Provisional Back     alignment and domain information
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional Back     alignment and domain information
>smart00645 Pept_C1 Papain family cysteine protease Back     alignment and domain information
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase) Back     alignment and domain information
>PTZ00462 Serine-repeat antigen protein; Provisional Back     alignment and domain information
>KOG1544 consensus Predicted cysteine proteinase TIN-ag [General function prediction only] Back     alignment and domain information
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC) Back     alignment and domain information
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively Back     alignment and domain information
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) Back     alignment and domain information
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4128 consensus Bleomycin hydrolases and aminopeptidases of cysteine protease family [Amino acid transport and metabolism] Back     alignment and domain information
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A Back     alignment and domain information
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase Back     alignment and domain information
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
3tnx_A363 Structure Of The Precursor Of A Thermostable Varian 1e-47
2fo5_A262 Crystal Structure Of Recombinant Barley Cysteine En 3e-47
1s4v_A229 The 2.0 A Crystal Structure Of The Kdel-Tailed Cyst 4e-46
3p5w_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 2e-45
1cqd_A221 The 2.1 Angstrom Structure Of A Cysteine Protease W 3e-44
3p5u_A220 Actinidin From Actinidia Arguta Planch (Sarusashi) 3e-44
1aec_A218 Crystal Structure Of Actinidin-E-64 Complex+ Length 4e-43
1pci_A322 Procaricain Length = 322 4e-42
2act_A220 Crystallographic Refinement Of The Structure Of Act 7e-42
3bcn_A209 Crystal Structure Of A Papain-Like Cysteine Proteas 1e-41
1o0e_A208 1.9 Angstrom Crystal Structure Of A Plant Cysteine 2e-41
1iwd_A215 Proposed Amino Acid Sequence And The 1.63 Angstrom 6e-41
2pns_A208 1.9 Angstrom Resolution Crystal Structure Of A Plan 4e-40
1khp_A212 Monoclinic Form Of Papain/zlfg-dam Covalent Complex 8e-39
2bdz_A214 Mexicain From Jacaratia Mexicana Length = 214 1e-38
1ppp_A212 Crystal Structure Of Papain-E64-C Complex. Binding 3e-38
1pip_A212 Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Al 4e-38
3f75_A224 Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In 5e-38
2cio_A212 The High Resolution X-Ray Structure Of Papain Compl 1e-37
3ima_A212 Complex Strcuture Of Tarocystatin And Papain Length 1e-37
7pck_A314 Crystal Structure Of Wild Type Human Procathepsin K 1e-37
1stf_E212 The Refined 2.4 Angstroms X-Ray Crystal Structure O 5e-37
2c0y_A315 The Crystal Structure Of A Cys25ala Mutant Of Human 6e-37
3qt4_A329 Structure Of Digestive Procathepsin L 3 Of Tenebrio 4e-36
1yal_A218 Carica Papaya Chymopapain At 1.7 Angstroms Resoluti 8e-36
1ppo_A216 Determination Of The Structure Of Papaya Protease O 1e-35
3h7d_A215 The Crystal Structure Of The Cathepsin K Variant M5 2e-35
1meg_A216 Crystal Structure Of A Caricain D158e Mutant In Com 2e-35
3ovz_A213 Cathepsin K In Complex With A Covalent Inhibitor Wi 3e-33
1snk_A214 Cathepsin K Complexed With Carbamate Derivatized No 4e-33
1mem_A215 Crystal Structure Of Cathepsin K Complexed With A P 4e-33
1u9v_A217 Crystal Structure Of The Cysteine Protease Human Ca 4e-33
2fye_A217 Mutant Human Cathepsin S With Irreversible Inhibito 4e-33
1npz_A217 Crystal Structures Of Cathepsin S Inhibitor Complex 6e-33
2g6d_A217 Human Cathepsin S Mutant With Vinyl Sulfone Inhibit 6e-33
1ms6_A222 Dipeptide Nitrile Inhibitor Bound To Cathepsin S. L 8e-33
2f7d_A215 A Mutant Rabbit Cathepsin K With A Nitrile Inhibito 1e-32
2f1g_A220 Cathepsin S In Complex With Non-Covalent 2-(Benzoxa 1e-32
1gec_E216 Glycyl Endopeptidase-complex With Benzyloxycarbonyl 1e-32
3ovx_A218 Cathepsin S In Complex With A Covalent Inhibitor Wi 1e-32
3n3g_A217 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitri 1e-32
2fq9_A225 Cathepsin S With Nitrile Inhibitor Length = 225 1e-32
3qj3_A331 Structure Of Digestive Procathepsin L2 Proteinase F 4e-32
1glo_A217 Crystal Structure Of Cys25ser Mutant Of Human Cathe 1e-31
3mpe_A220 Crystal Structure Of Human Cathepsin-S C25s Mutant 1e-31
3kwn_A219 Cathepsin S In Complex With Thioether Acetamide P3 1e-31
3iej_A222 Pyrazole-Based Cathepsin S Inhibitors With Arylalky 1e-31
3hwn_A258 Cathepsin L With Az13010160 Length = 258 2e-31
3ioq_A213 Crystal Structure Of The Carica Candamarcensis Cyst 3e-31
1vsn_A215 Crystal Structure Of A Potent Small Molecule Inhibi 3e-31
3u8e_A222 Crystal Structure Of Cysteine Protease From Bulbs O 7e-31
1cjl_A312 Crystal Structure Of A Cysteine Protease Proform Le 9e-31
1cs8_A316 Crystal Structure Of Procathepsin L Length = 316 1e-30
1fh0_A221 Crystal Structure Of Human Cathepsin V Complexed Wi 2e-30
3of8_A221 Structural Basis For Reversible And Irreversible In 8e-30
3h89_A220 A Combined Crystallographic And Molecular Dynamics 1e-29
3hha_A220 Crystal Structure Of Cathepsin L In Complex With Az 1e-29
2o6x_A310 Crystal Structure Of Procathepsin L1 From Fasciola 1e-29
3h6s_A221 Strucure Of Clitocypin - Cathepsin V Complex Length 2e-29
2nqd_B221 Crystal Structure Of Cysteine Protease Inhibitor, C 9e-29
3iv2_A220 Crystal Structure Of Mature Apo-Cathepsin L C25a Mu 9e-29
3kse_A220 Unreduced Cathepsin L In Complex With Stefin A Leng 1e-28
3bc3_A220 Exploring Inhibitor Binding At The S Subsites Of Ca 1e-28
2b1m_A246 Crystal Structure Of A Papain-Fold Protein Without 2e-28
3bpm_A243 Crystal Structure Of Falcipain-3 With Its Inhibitor 3e-27
8pch_A220 Crystal Structure Of Porcine Cathepsin H Determined 3e-27
2p7u_A215 The Crystal Structure Of Rhodesain, The Major Cyste 9e-27
2vhs_A217 Cathsilicatein, A Chimera Length = 217 8e-26
1yvb_A241 The Plasmodium Falciparum Cysteine Protease Falcipa 1e-25
3pnr_A240 Structure Of Pbicp-C In Complex With Falcipain-2 Le 2e-24
1aim_A215 Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluor 2e-23
1ewp_A215 Cruzain Bound To Mor-Leu-Hpq Length = 215 3e-23
3iut_A221 The Crystal Structure Of Cruzain In Complex With A 2e-22
3hd3_A215 High Resolution Crystal Structure Of Cruzain Bound 2e-22
1m6d_A214 Crystal Structure Of Human Cathepsin F Length = 214 3e-21
1icf_A175 Crystal Structure Of Mhc Class Ii Associated P41 Ii 5e-21
1mhw_A175 Design Of Non-covalent Inhibitors Of Human Cathepsi 6e-20
3d6s_A223 Crystal Structure Of Mite Allergen Der F 1 Length = 7e-16
1xkg_A312 Crystal Structure Of The Major House Dust Mite Alle 1e-15
3rvw_A222 Crystal Structure Of Der P 1 Complexed With Fab 4c1 6e-15
2as8_A222 Crystal Structure Of Mature And Fully Active Der P 6e-15
3f5v_A222 C2 Crystal Form Of Mite Allergen Der P 1 Length = 2 9e-14
3pdf_A441 Discovery Of Novel Cyanamide-Based Inhibitors Of Ca 5e-12
1jqp_A438 Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric 2e-11
3qsd_A254 Structure Of Cathepsin B1 From Schistosoma Mansoni 3e-07
1k3b_C69 Crystal Structure Of Human Dipeptidyl Peptidase I ( 9e-07
1deu_A277 Crystal Structure Of Human Procathepsin X: A Cystei 2e-06
1ef7_A242 Crystal Structure Of Human Cathepsin X Length = 242 3e-06
1pbh_A317 Crystal Structure Of Human Recombinant Procathepsin 6e-06
1cpj_A260 Crystal Structures Of Recombinant Rat Cathepsin B A 9e-06
1cte_A254 Crystal Structures Of Recombinant Rat Cathepsin B A 1e-05
3ai8_B256 Cathepsin B In Complex With The Nitroxoline Length 1e-05
3k9m_A254 Cathepsin B In Complex With Stefin A Length = 254 1e-05
1gmy_A261 Cathepsin B Complexed With Dipeptidyl Nitrile Inhib 1e-05
2wbf_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 6e-05
3ch2_X265 Crystal Structure Analysis Of Sera5e From Plasmodiu 6e-05
1mir_A322 Rat Procathepsin B Length = 322 8e-05
3cbj_A266 Chagasin-cathepsin B Complex Length = 266 1e-04
1qdq_A253 X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 1e-04
1ito_A256 Crystal Structure Analysis Of Bovine Spleen Catheps 2e-04
1sp4_B205 Crystal Structure Of Ns-134 In Complex With Bovine 2e-04
1huc_B205 The Refined 2.15 Angstroms X-Ray Crystal Structure 3e-04
4hwy_A340 Trypanosoma Brucei Procathepsin B Solved From 40 Fs 5e-04
3hhi_A325 Crystal Structure Of Cathepsin B From T. Brucei In 6e-04
3mor_A317 Crystal Structure Of Cathepsin B From Trypanosoma B 7e-04
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of Papain At 2.6 Angstroem Resolution Length = 363 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (473), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 118/311 (37%), Positives = 170/311 (54%), Gaps = 34/311 (10%)
Query: 16  EQWMVEFARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFLASY 63
           E WM++  + YK+  EK  RF+IFK N ++            L LN FAD++ ++F   Y
Sbjct: 67  ESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKY 126
Query: 64  TGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSY-CCWAFTAVA 122
           TG       +  +   ++ + LN   ++  + +DW ++GAVTPVK+QGS    WAF+AV+
Sbjct: 127 TG---SIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVS 183
Query: 123 TVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAKNFLENAFEYIRQYQRLASECVYPYQGR 181
           T+E + KIRTG L   S+ +L+DC   + GC   +  +A + + QY  +     YPY+G 
Sbjct: 184 TIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYG-IHYRNTYPYEGV 242
Query: 182 QDYYCDWWRSSASGKYGA-IRGYQYVQPATEEGLQDVVSRQPVSVAIDATW--FNFYHGG 238
           Q Y C   RS   G Y A   G + VQP  E  L   ++ QPVSV ++A    F  Y GG
Sbjct: 243 QRY-C---RSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGG 298
Query: 239 VFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGS-GL 297
           +F GPCGN  +H V  VGYG          Y L++N WGT W E G +RI RG G S G+
Sbjct: 299 IFVGPCGNKVDHAVAAVGYGPN--------YILIRNSWGTGWGENGYIRIKRGTGNSYGV 350
Query: 298 CNIAANAAYPL 308
           C +  ++ YP+
Sbjct: 351 CGLYTSSFYPV 361
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine Endoprotease B Isoform 2 (Ep-B2) In Complex With Leupeptin Length = 262 Back     alignment and structure
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine Endopeptidase Functioning In Programmed Cell Death Of Ricinus Communis Endosperm Length = 229 Back     alignment and structure
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With Proline Specificity From Ginger Rhizome, Zingiber Officinale Length = 221 Back     alignment and structure
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi) Length = 220 Back     alignment and structure
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+ Length = 218 Back     alignment and structure
>pdb|1PCI|A Chain A, Procaricain Length = 322 Back     alignment and structure
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin At 1.7 Angstroms Resolution By Fast Fourier Least-Squares Methods Length = 220 Back     alignment and structure
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease Ervatamin-A Complexed With Irreversible Inhibitor E-64 Length = 209 Back     alignment and structure
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine Protease Ervatamin C Length = 208 Back     alignment and structure
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray Crystal Structure Of A Plant Cysteine Protease Ervatamin B: Insight Into The Structural Basis Of Its Stability And Substrate Specificity Length = 215 Back     alignment and structure
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant Cysteine Protease Ervatamin-C Refinement With Cdna Derived Amino Acid Sequence Length = 208 Back     alignment and structure
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex Length = 212 Back     alignment and structure
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana Length = 214 Back     alignment and structure
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding Diversity Of E64-C To Papain S2 And S3 Subsites Length = 212 Back     alignment and structure
>pdb|1PIP|A Chain A, Crystal Structure Of Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide Complex At 1.7 Angstroms Resolution: Noncovalent Binding Mode Of A Common Sequence Of Endogenous Thiol Protease Inhibitors Length = 212 Back     alignment and structure
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex With Its Propeptide Length = 224 Back     alignment and structure
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed With Fragments Of The Trypanosoma Brucei Cysteine Protease Inhibitor Icp Length = 212 Back     alignment and structure
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain Length = 212 Back     alignment and structure
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K Length = 314 Back     alignment and structure
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of Recombinant Human Stefin B In Complex With The Cysteine Proteinase Papain: A Novel Type Of Proteinase Inhibitor Interaction Length = 212 Back     alignment and structure
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human Procathepsin S Length = 315 Back     alignment and structure
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio Molitor Larval Midgut Length = 329 Back     alignment and structure
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution Length = 218 Back     alignment and structure
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega Length = 216 Back     alignment and structure
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In Compl Chondroitin-4-Sulfate Length = 215 Back     alignment and structure
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex With E-64 Length = 216 Back     alignment and structure
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A Ketoamide Warhead Length = 213 Back     alignment and structure
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized Norleucine Aldehyde Length = 214 Back     alignment and structure
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent Vinyl Sulfone Inhibitor Length = 215 Back     alignment and structure
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin K In Complex With The Covalent Inhibitor Nvp-Abe854 Length = 217 Back     alignment and structure
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra- 14013 Length = 217 Back     alignment and structure
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes Length = 217 Back     alignment and structure
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra- 14009 Length = 217 Back     alignment and structure
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S. Length = 222 Back     alignment and structure
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor Length = 215 Back     alignment and structure
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent 2-(Benzoxazol-2-Ylamino)- Acetamide Length = 220 Back     alignment and structure
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With Benzyloxycarbonyl-leucine-valine- Glycine-methylene Covalently Bound To Cysteine 25 Length = 216 Back     alignment and structure
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An Aldehyde Warhead Length = 218 Back     alignment and structure
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As Cathepsin S Inhibitors: N3, Not N1 Is Critically Important Length = 217 Back     alignment and structure
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor Length = 225 Back     alignment and structure
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From Tenebrio Molitor Larval Midgut Length = 331 Back     alignment and structure
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S Length = 217 Back     alignment and structure
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With Bound Drug Length = 220 Back     alignment and structure
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3 Inhibitor Length = 219 Back     alignment and structure
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As P1 Binding Elements Length = 222 Back     alignment and structure
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160 Length = 258 Back     alignment and structure
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine Protease Cms1ms2 In Complex With E-64 Length = 213 Back     alignment and structure
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor Bound To Cathepsin K Length = 215 Back     alignment and structure
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of Crocus Sativus At 1.3 A Resolution Length = 222 Back     alignment and structure
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform Length = 312 Back     alignment and structure
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L Length = 316 Back     alignment and structure
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An Irreversible Vinyl Sulfone Inhibitor Length = 221 Back     alignment and structure
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible Inhibition Of Human Cathepsin L By Their Respective Dipeptidyl Glyoxal And Diazomethylketone Inhibitors Length = 221 Back     alignment and structure
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study Of Cathepsin-L Retro-Binding Inhibitors(Compound 4) Length = 220 Back     alignment and structure
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With Az12878478 Length = 220 Back     alignment and structure
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola Hepatica Length = 310 Back     alignment and structure
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex Length = 221 Back     alignment and structure
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor, Chagasin, In Complex With Human Cathepsin L Length = 221 Back     alignment and structure
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant Length = 220 Back     alignment and structure
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A Length = 220 Back     alignment and structure
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin L Length = 220 Back     alignment and structure
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The Catalytic Cysteine From Seeds Of Pachyrhizus Erosus Length = 246 Back     alignment and structure
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor, Leupeptin Length = 243 Back     alignment and structure
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1 Angstrom Resolution: Location Of The Mini-Chain C-Terminal Carboxyl Group Defines Cathepsin H Aminopeptidase Function Length = 220 Back     alignment and structure
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine Protease Of T. Brucei Rhodesiense, Bound To Inhibitor K777 Length = 215 Back     alignment and structure
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera Length = 217 Back     alignment and structure
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2 Length = 241 Back     alignment and structure
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2 Length = 240 Back     alignment and structure
>pdb|1AIM|A Chain A, Cruzain Inhibited By Benzoyl-Tyrosine-Alanine-Fluoromethylketone Length = 215 Back     alignment and structure
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq Length = 215 Back     alignment and structure
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A Tetrafluorophenoxymethyl Ketone Inhibitor Length = 221 Back     alignment and structure
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The Vinyl Sulfone Inhibitor Smdc-256047 Length = 215 Back     alignment and structure
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F Length = 214 Back     alignment and structure
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii Fragment In Complex With Cathepsin L Length = 175 Back     alignment and structure
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L. From The 96- Residue Proregion To Optimized Tripeptides Length = 175 Back     alignment and structure
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1 Length = 223 Back     alignment and structure
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen Der P 1 In Its Pro Form At 1.61 A Resolution Length = 312 Back     alignment and structure
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1 Length = 222 Back     alignment and structure
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1 Allergen Length = 222 Back     alignment and structure
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1 Length = 222 Back     alignment and structure
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin C Length = 441 Back     alignment and structure
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric Cysteine Protease Of The Papain Family Length = 438 Back     alignment and structure
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In Complex With Ca074 Inhibitor Length = 254 Back     alignment and structure
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I (Cathepsin C): Exclusion Domain Added To An Endopeptidase Framework Creates The Machine For Activation Of Granular Serine Proteases Length = 69 Back     alignment and structure
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine Protease With The Proregion Covalently Linked To The Active Site Cysteine Length = 277 Back     alignment and structure
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X Length = 242 Back     alignment and structure
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At 3.2 Angstrom Resolution Length = 317 Back     alignment and structure
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 260 Back     alignment and structure
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A Cathepsin B-Inhibitor Complex: Implications For Structure- Based Inhibitor Design Length = 254 Back     alignment and structure
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline Length = 256 Back     alignment and structure
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A Length = 254 Back     alignment and structure
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor Length = 261 Back     alignment and structure
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum With Loop 690-700 Ordered Length = 265 Back     alignment and structure
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium Falciparum Length = 265 Back     alignment and structure
>pdb|1MIR|A Chain A, Rat Procathepsin B Length = 322 Back     alignment and structure
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex Length = 266 Back     alignment and structure
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074 Complex Length = 253 Back     alignment and structure
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B- E64c Complex Length = 256 Back     alignment and structure
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor Extends Along The Whole Active Site Cleft Length = 205 Back     alignment and structure
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of Human Liver Cathepsin B: The Structural Basis For Its Specificity Length = 205 Back     alignment and structure
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs Free-electron Laser Pulse Data By Serial Femtosecond X-ray Crystallography Length = 340 Back     alignment and structure
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex With Ca074 Length = 325 Back     alignment and structure
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query308
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 1e-114
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 1e-107
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 1e-106
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 1e-105
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 1e-105
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 1e-103
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 1e-101
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 1e-101
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 1e-90
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 7e-90
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 8e-90
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 1e-89
1cqd_A221 Protein (protease II); cysteine protease, glycopro 2e-89
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 3e-89
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 7e-89
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 3e-88
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 5e-88
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 6e-88
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 7e-88
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 2e-87
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 3e-87
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 1e-85
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 4e-85
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 4e-81
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 5e-81
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 5e-81
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 3e-80
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 4e-79
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 4e-79
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 7e-76
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 5e-66
3u8e_A222 Papain-like cysteine protease; papain-like cystein 1e-65
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 3e-65
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 5e-56
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 1e-53
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 3e-47
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 4e-45
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 2e-42
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 2e-38
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 8e-19
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 1e-11
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Length = 322 Back     alignment and structure
 Score =  332 bits (853), Expect = e-114
 Identities = 114/313 (36%), Positives = 161/313 (51%), Gaps = 31/313 (9%)

Query: 13  AKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFL 60
                WM+   + Y++  EK  RF+IFK N  +            L LN+FADL+ ++F 
Sbjct: 20  QLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFN 79

Query: 61  ASYTGYKPPPTDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYC--CWAF 118
             Y G           +    F N +   +   +++DW ++GAVTPV+ QGS C  CWAF
Sbjct: 80  EKYVGSLIDA--TIEQSYDEEFINEDIVNLP--ENVDWRKKGAVTPVRHQGS-CGSCWAF 134

Query: 119 TAVATVEGLNKIRTGQLVTRSKHQLVDCSTLN-GCAKNFLENAFEYIRQYQRLASECVYP 177
           +AVATVEG+NKIRTG+LV  S+ +LVDC   + GC   +   A EY+ +   +     YP
Sbjct: 135 SAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNG-IHLRSKYP 193

Query: 178 YQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDAT--WFNFY 235
           Y+  +   C        G      G   VQP  E  L + +++QPVSV +++    F  Y
Sbjct: 194 YKA-KQGTCR--AKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLY 250

Query: 236 HGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG- 294
            GG+F GPCG   +  VT VGYG      G + Y L+KN WGT W E G +RI R  G  
Sbjct: 251 KGGIFEGPCGTKVDGAVTAVGYGK----SGGKGYILIKNSWGTAWGEKGYIRIKRAPGNS 306

Query: 295 SGLCNIAANAAYP 307
            G+C +  ++ YP
Sbjct: 307 PGVCGLYKSSYYP 319
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} Length = 331 Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Length = 312 Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Length = 314 Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Length = 315 Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Length = 316 Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Length = 310 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Length = 329 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Length = 262 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Length = 216 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 224 Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Length = 221 Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Length = 215 Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Length = 212 Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Length = 218 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} Length = 213 Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Length = 229 Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Length = 214 Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Length = 246 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Length = 243 Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Length = 215 Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Length = 241 Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Length = 214 Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Length = 215 Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Length = 218 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Length = 220 Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Length = 220 Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Length = 208 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Length = 441 Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} Length = 222 Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Length = 265 Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Length = 277 Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} PDB: 3mor_A* Length = 325 Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} PDB: 3s3q_A* 3s3r_A* Length = 254 Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Length = 317 Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Length = 266 Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Length = 291 Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Length = 106 Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
3tnx_A363 Papain; hydrolase, cytoplasm for recombinant expre 100.0
3qj3_A331 Cathepsin L-like protein; hydrolase, proteinase, l 100.0
1pci_A322 Procaricain; zymogen, hydrolase, thiol protease; 3 100.0
3qt4_A329 Cathepsin-L-like midgut cysteine proteinase; hydro 100.0
1by8_A314 Protein (procathepsin K); hydrolase(sulfhydryl pro 100.0
2c0y_A315 Procathepsin S; proenzyme, proteinase, hydrolase, 100.0
1cs8_A316 Human procathepsin L; prosegment, propeptide, inhi 100.0
2o6x_A310 Procathepsin L1, secreted cathepsin L 1; hydrolase 100.0
1xkg_A312 DER P I, major mite fecal allergen DER P 1; major 100.0
3pdf_A441 Cathepsin C, dipeptidyl peptidase 1; two domains, 100.0
1cqd_A221 Protein (protease II); cysteine protease, glycopro 100.0
1ppo_A216 Protease omega; hydrolase(thiol protease); 1.80A { 100.0
3p5u_A220 Actinidin; SAD, cysteine proteinases, hydrolase; 1 100.0
1yal_A218 Chymopapain; hydrolase, thiol protease; 1.70A {Car 100.0
1iwd_A215 Ervatamin B; cysteine protease, alpha-beta protein 100.0
3hhi_A325 Cathepsin B-like cysteine protease; occluding loop 100.0
3kwz_A215 Cathepsin K; enzyme inhibitor, covalent reversible 100.0
1s4v_A229 Cysteine endopeptidase; KDEL ER retention signal, 100.0
2fo5_A262 Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cyst 100.0
3ovx_A218 Cathepsin S; hydrolase, covalent inhibitor, aldehy 100.0
2cio_A212 Papain; hydrolase/inhibitor, complex hydrolase/inh 100.0
3u8e_A222 Papain-like cysteine protease; papain-like cystein 100.0
3ioq_A213 CMS1MS2; caricaceae, cysteine protease, papain fam 100.0
2xu3_A220 Cathepsin L1; hydrolase, drug design, thiol protea 100.0
3i06_A215 Cruzipain; autocatalytic cleavage, glycoprotein, p 100.0
2bdz_A214 Mexicain; cysteine protease, peptidase_C1, papain- 100.0
8pch_A220 Cathepsin H; hydrolase, protease, cysteine protein 100.0
2b1m_A246 SPE31; papain-like, sugar binding protein; HET: NA 100.0
1o0e_A208 Ervatamin C; plant cysteine protease, two domain, 100.0
1m6d_A214 Cathepsin F, catsf; papain family cysteine proteas 100.0
3f75_A224 Toxopain-2, cathepsin L protease; medical structur 100.0
3bwk_A243 Cysteine protease falcipain-3; malaria, hydrolase; 100.0
2oul_A241 Falcipain 2; cysteine protease, inhibitor, macromo 100.0
3f5v_A222 DER P 1 allergen; allergy, asthma, DUST mites, gly 100.0
3pbh_A317 Procathepsin B; thiol protease, cysteine protease, 100.0
1deu_A277 Procathepsin X; cysteine protease, proregion, pros 100.0
3cbj_A266 Cathepsin B; cathepsin B, occluding loop, chagas d 100.0
3qsd_A254 Cathepsin B-like peptidase (C01 family); cysteine 100.0
2wbf_X265 Serine-repeat antigen protein; SERA, malaria, vacu 100.0
3ois_A291 Cysteine protease; alpha and beta, hydrolase; HET: 100.0
2cb5_A453 Protein (bleomycin hydrolase); aminopeptidase, cys 100.0
2e01_A457 Cysteine proteinase 1; bleomycin hydrolase, thiol 100.0
3pw3_A 383 Aminopeptidase C; bleomycin, cysteine proteinase f 100.0
3f75_P106 Toxopain-2, cathepsin L propeptide; medical struct 99.59
2l95_A80 Crammer, LP06209P; cysteine proteinase inhibitor, 99.49
1pxv_A183 Cysteine protease; hydrolase; 1.80A {Staphylococcu 96.81
1x9y_A367 Cysteine proteinase; half-barrel, barrel-sandwich- 96.51
1cv8_A174 Staphopain; cysteine protease, thiol protease, pap 96.3
3erv_A236 Putative C39-like peptidase; structural genomics, 90.06
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya} Back     alignment and structure
Probab=100.00  E-value=6.5e-83  Score=596.69  Aligned_cols=290  Identities=39%  Similarity=0.743  Sum_probs=253.9

Q ss_pred             ccCChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH------------hcCCCCCCCCHHHHHhhhcCCCCCCC
Q 044448            4 TSHKTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF------------LRLNKFADLTREKFLASYTGYKPPPT   71 (308)
Q Consensus         4 ~~~~~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~N~~~------------~g~N~fsDlt~eEf~~~~~~~~~~~~   71 (308)
                      .+..++.+.++|++||++|+|.|.+.+|+.+|++||++|+++            +|+|+|+|||.|||++++++..+...
T Consensus        55 dl~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~  134 (363)
T 3tnx_A           55 DLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNY  134 (363)
T ss_dssp             CSSCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHHHHHHHSCSSCSCC
T ss_pred             hhcCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHHHHHHhcccccccc
Confidence            355567899999999999999999999999999999999998            89999999999999999987655332


Q ss_pred             CCCCCCCCCccccCCCCCCCCCceeecCCCCCCCccCCCCC-CchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhcCC-C
Q 044448           72 DHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGS-YCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCST-L  149 (308)
Q Consensus        72 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pv~dQg~-gsCwAfa~~~~~e~~~~i~~~~~~~lS~q~l~dc~~-~  149 (308)
                      ......... .  ......+||++||||++|+|+||||||. |||||||++++||++++|+++.++.||+|+|+||+. +
T Consensus       135 ~~~~~~~~~-~--~~~~~~~lP~s~DWR~~g~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~~~~  211 (363)
T 3tnx_A          135 TTTELSYEE-V--LNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRS  211 (363)
T ss_dssp             CCSSSSSSC-C--CCCSCCCCCSCEEGGGGTCCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTS
T ss_pred             ccccccccc-c--cCcccCCCCcceecccCCCCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhcccCCC
Confidence            211100011 1  1111236999999999999999999999 999999999999999999999999999999999999 8


Q ss_pred             CCCCCCcHHHHHHHHHHcCCCCCCCCcCCCCCCCCCCcccccCCCCccEEEeeeEEcCCCCHHHHHHHHhcCCeEEEEec
Q 044448          150 NGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDA  229 (308)
Q Consensus       150 ~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~~gPV~v~i~~  229 (308)
                      .||+||++..|++|+.++ ||++|++|||.+ ..+.|.  .........++.++..++..++..|+.+|++|||+|+|++
T Consensus       212 ~GC~GG~~~~a~~yi~~~-Gi~~e~~yPY~~-~~~~c~--~~~~~~~~~~~~~~~~~~~~~e~~l~~~v~~gPvsvai~a  287 (363)
T 3tnx_A          212 YGCNGGYPWSALQLVAQY-GIHYRNTYPYEG-VQRYCR--SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEA  287 (363)
T ss_dssp             CTTBCCCHHHHHHHHHHT-CBCBTTTSCCCS-SCCCCC--GGGGCSCSBCCCEEEEECSSCHHHHHHHHTTSCEEEEECC
T ss_pred             CCCCCCChHHHHhHHHhc-CccccccCCCcC-cCCCcc--cCCCCCceeeccceEEcchhhHHHHHHHHHcCCcEEEEEe
Confidence            899999999999999887 999999999999 888787  4434455677888888988899999999999999999997


Q ss_pred             C--cccccCCceEeCCCCCCCCeEEEEEEeCCcCCCCCCCCeEEEecCCCCCcCCCceEEEEeCCCC-CCCccccccccc
Q 044448          230 T--WFNFYHGGVFTGPCGNTPNHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGG-SGLCNIAANAAY  306 (308)
Q Consensus       230 ~--~f~~y~~Giy~~~c~~~~~Hav~iVGyg~~~~~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~-~~~Cgi~~~~~y  306 (308)
                      .  +|++|++|||..+|++.++|||+|||||+        +|||||||||++|||+|||||+|+.+. .|+|||++.|+|
T Consensus       288 ~~~~F~~Y~sGVy~~~~~~~lnHaV~iVGyG~--------~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~~a~y  359 (363)
T 3tnx_A          288 AGKDFQLYRGGIFVGPCGNKVDHAVAAVGYGP--------NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFY  359 (363)
T ss_dssp             CSHHHHTEEEEEECCCCCSCCCEEEEEEEEET--------TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTSCEEE
T ss_pred             cchhhhCCCCCEECCCCCCCCCeEEEEEEcCC--------CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccceeee
Confidence            6  89999999999999888999999999975        499999999999999999999999865 578999999999


Q ss_pred             cC
Q 044448          307 PL  308 (308)
Q Consensus       307 p~  308 (308)
                      |+
T Consensus       360 Pi  361 (363)
T 3tnx_A          360 PV  361 (363)
T ss_dssp             EE
T ss_pred             cc
Confidence            96
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0 Back     alignment and structure
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1 Back     alignment and structure
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor} Back     alignment and structure
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A Back     alignment and structure
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens} Back     alignment and structure
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A* Back     alignment and structure
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica} Back     alignment and structure
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1 Back     alignment and structure
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C* Back     alignment and structure
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1 Back     alignment and structure
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A* Back     alignment and structure
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E* Back     alignment and structure
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1 Back     alignment and structure
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A* Back     alignment and structure
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ... Back     alignment and structure
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1 Back     alignment and structure
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare} Back     alignment and structure
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ... Back     alignment and structure
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ... Back     alignment and structure
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0 Back     alignment and structure
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1 Back     alignment and structure
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ... Back     alignment and structure
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ... Back     alignment and structure
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana} Back     alignment and structure
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A* Back     alignment and structure
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A* Back     alignment and structure
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A* Back     alignment and structure
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1 Back     alignment and structure
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0 Back     alignment and structure
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A* Back     alignment and structure
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A Back     alignment and structure
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A Back     alignment and structure
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A Back     alignment and structure
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ... Back     alignment and structure
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A* Back     alignment and structure
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X Back     alignment and structure
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa} Back     alignment and structure
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A Back     alignment and structure
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A Back     alignment and structure
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis} Back     alignment and structure
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} Back     alignment and structure
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster} Back     alignment and structure
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A Back     alignment and structure
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4 Back     alignment and structure
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1 Back     alignment and structure
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 308
d1xkga1302 d.3.1.1 (A:4-305) Major mite fecal allergen der p 3e-45
d1cs8a_316 d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens 4e-45
d1yala_218 d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [ 5e-44
d2oula1241 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falcip 8e-43
d1ppoa_216 d.3.1.1 (A:) Caricain (protease omega) {Papaya (Ca 5e-41
d1s4va_224 d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor 5e-41
d1aeca_218 d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwi 6e-41
d1cqda_216 d.3.1.1 (A:) Proline-specific cysteine protease {G 2e-40
d1o0ea_208 d.3.1.1 (A:) Ervatamin C {East indian rosebay (Erv 2e-40
d1m6da_214 d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [Ta 2e-40
d1iwda_215 d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia 4e-39
d1khqa_212 d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId 5e-39
d2h7ja1217 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sa 1e-38
d2r6na1215 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sa 3e-38
d1fh0a_221 d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens 3e-37
g8pch.1228 d.3.1.1 (P:,A:) Cathepsin H {Pig (Sus scrofa) [Tax 1e-35
d1gmya_254 d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens 2e-34
d1me4a_215 d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 56 4e-34
g1k3b.1233 d.3.1.1 (B:,C:) Cathepsin C (dipeptidyl peptidase 4e-33
d1deua_275 d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens 8e-30
d2cb5a_453 d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapi 1e-05
d3gcba_458 d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (S 9e-05
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Length = 302 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: Major mite fecal allergen der p 1
species: House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]

 Score =  153 bits (387), Expect = 3e-45
 Identities = 58/300 (19%), Positives = 105/300 (35%), Gaps = 14/300 (4%)

Query: 16  EQWMVEFARTYKDQAEKEMRFKIFKKNHEFLR-----LNKFADLTREKFLASYTGYKPPP 70
           E++   F ++Y    ++E   K F ++ ++++     +N  +DL+ ++F   +       
Sbjct: 6   EEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMSAEAF 65

Query: 71  TDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGSYC-CWAFTAVATVEGLNK 129
                    N   N  S   +    ID  +   VTP++ QG     WAF+ VA  E    
Sbjct: 66  EHLKTQFDLNAETNACSINGNAPAEIDLRQMRTVTPIRMQGGCGSAWAFSGVAATESAYL 125

Query: 130 IRTGQLVTRSKHQLVDCSTLNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWW 189
               Q +  ++ +LVDC++ +GC  + +    EYI+    +           Q       
Sbjct: 126 AYRDQSLDLAEQELVDCASQHGCHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNA 185

Query: 190 RSSASGKYGAIRGYQYVQPATEEGLQDVVSRQPVSVAIDATWFNFYHGGVFTGPCGNTP- 248
           +      Y  I      +               + +     + ++    +     G  P 
Sbjct: 186 QRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPN 245

Query: 249 NHGVTIVGYGTTTEAEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNIAANAAYPL 308
            H V IVGY           YW+V+N W TNW + G       +    L  I       +
Sbjct: 246 YHAVNIVGYSN----AQGVDYWIVRNSWDTNWGDNGYGYFAANI---DLMMIEEYPYVVI 298
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Length = 316 Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Length = 218 Back     information, alignment and structure
>d2oula1 d.3.1.1 (A:-16-224) Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} Length = 241 Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Length = 216 Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Length = 224 Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Length = 218 Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Length = 216 Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Length = 208 Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Length = 214 Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Length = 215 Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Length = 212 Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Length = 215 Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Length = 221 Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Length = 254 Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Length = 215 Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Length = 275 Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 453 Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Length = 458 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query308
d1cs8a_316 (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 960 100.0
d1xkga1302 Major mite fecal allergen der p 1 {House-dust mite 100.0
d1ppoa_216 Caricain (protease omega) {Papaya (Carica papaya) 100.0
d1yala_218 Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d1cqda_216 Proline-specific cysteine protease {Ginger rhizome 100.0
d2oula1241 Falcipain 2 {Plasmodium falciparum [TaxId: 5833]} 100.0
d1s4va_224 Vignain (bean endopeptidase) {Castor bean (Ricinus 100.0
d2h7ja1217 (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 960 100.0
d1khqa_212 Papain {Papaya (Carica papaya) [TaxId: 3649]} 100.0
d2r6na1215 (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 960 100.0
g8pch.1228 Cathepsin H {Pig (Sus scrofa) [TaxId: 9823]} 100.0
d1o0ea_208 Ervatamin C {East indian rosebay (Ervatamia corona 100.0
d1iwda_215 Ervatamin B {Adam's apple (Ervatamia coronaria) [T 100.0
d1fh0a_221 (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 960 100.0
d1aeca_218 Actinidin {Chinese gooseberry or kiwifruit (Actini 100.0
d1m6da_214 Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1me4a_215 Cruzain {Trypanosoma cruzi [TaxId: 5693]} 100.0
g1k3b.1233 Cathepsin C (dipeptidyl peptidase I), catalytic do 100.0
d1deua_275 (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 960 100.0
d1gmya_254 (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 960 100.0
d3gcba_ 458 Bleomycin hydrolase {Baker's yeast (Saccharomyces 99.79
d2cb5a_ 453 Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 99.73
d1pxva_183 Staphopain SspB {Staphylococcus aureus [TaxId: 128 93.25
d1cv8a_173 Staphopain StpA {Staphylococcus aureus [TaxId: 128 90.91
>d1cs8a_ d.3.1.1 (A:) (Pro)cathepsin L {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Papain-like
domain: (Pro)cathepsin L
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-76  Score=542.72  Aligned_cols=286  Identities=34%  Similarity=0.666  Sum_probs=242.1

Q ss_pred             ChhHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH----------------hcCCCCCCCCHHHHHhhhcCCCCCC
Q 044448            7 KTGNIAAKHEQWMVEFARTYKDQAEKEMRFKIFKKNHEF----------------LRLNKFADLTREKFLASYTGYKPPP   70 (308)
Q Consensus         7 ~~~~~~~~f~~~~~~~~k~Y~~~~e~~~R~~iF~~N~~~----------------~g~N~fsDlt~eEf~~~~~~~~~~~   70 (308)
                      -+..++.+|++||++|+|.|.+. |+.+|++||++|++.                ||+|+|+|||.|||.+++++.....
T Consensus         4 ~~~~l~~~F~~f~~~~~K~Y~~~-ee~~R~~iF~~N~~~I~~~N~~~~~~~~~~~~g~N~fsDlt~eEf~~~~~~~~~~~   82 (316)
T d1cs8a_           4 FDHSLEAQWTKWKAMHNRLYGMN-EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRK   82 (316)
T ss_dssp             CCGGGHHHHHHHHHHTTCCCCTT-HHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCC
T ss_pred             ccHHHHHHHHHHHHHhCCcCCCH-HHHHHHHHHHHHHHHHHHHHhHhhcCCCceEEeceeccccCcHHHHhhhccccccc
Confidence            34678899999999999999875 778999999999987                8999999999999999988665433


Q ss_pred             CCCCCCCCCCccccCCCCCCCCCceeecCCCCCCCccCCCCC-CchHHHHHHHHHHHHHHHhcCCcccCCHHHHhhcCC-
Q 044448           71 TDHPHSNRSNWFKNLNSSKMSFYDSIDWNERGAVTPVKDQGS-YCCWAFTAVATVEGLNKIRTGQLVTRSKHQLVDCST-  148 (308)
Q Consensus        71 ~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~v~pv~dQg~-gsCwAfa~~~~~e~~~~i~~~~~~~lS~q~l~dc~~-  148 (308)
                      ....    .. .....  ..+||++||||++|+|+||||||. |||||||+++++|++++++++..+.||+|+|+||+. 
T Consensus        83 ~~~~----~~-~~~~~--~~~lP~s~Dwr~~g~vtpVkdQG~CGsCwAfa~~~~~E~~~~i~~~~~~~lS~Q~lvdC~~~  155 (316)
T d1cs8a_          83 PRKG----KV-FQEPL--FYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP  155 (316)
T ss_dssp             CSCC----EE-CCCCT--TCCCCSCEEGGGGTCCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGG
T ss_pred             cccC----cc-ccCcc--cccCCCceECCcCCcccccccCCCCceeeehhhhHHHHHHHHhhcCCcccchhhhhhhcccc
Confidence            2211    01 11111  226999999999999999999999 999999999999999999999999999999999987 


Q ss_pred             --CCCCCCCcHHHHHHHHHHcCCCCCCCCcCCCCCCCCCCcccccCCCCccEEEeeeEEcCCCCHHHHHHHHh-cCCeEE
Q 044448          149 --LNGCAKNFLENAFEYIRQYQRLASECVYPYQGRQDYYCDWWRSSASGKYGAIRGYQYVQPATEEGLQDVVS-RQPVSV  225 (308)
Q Consensus       149 --~~gC~GG~~~~a~~~~~~~~Gi~~e~~yPY~~~~~~~C~~~~~~~~~~~~~i~~~~~v~~~~~~~lk~~l~-~gPV~v  225 (308)
                        +.+|.||++..|++|+..++++.+|..|||.. ....|.  .. .......+..+.... .+++.|+++|. +|||+|
T Consensus       156 ~~~~~c~gg~~~~a~~y~~~~g~~~~e~~~~~~~-~~~~~~--~~-~~~~~~~~~~~~~~~-~~~~~l~~~l~~~gpv~v  230 (316)
T d1cs8a_         156 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEA-TEESCK--YN-PKYSVANDAGFVDIP-KQEKALMKAVATVGPISV  230 (316)
T ss_dssp             GTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCS-SCCCCC--CC-GGGEEECCCCEEECC-SCHHHHHHHHHHHCCEEE
T ss_pred             ccCCCCCCCchHHHHHHHHhcCcccccccccccc-cccccc--cc-ccccccccccccccc-CcHHHHHHHHHHhCCeEE
Confidence              77899999999999999996688899999998 777777  43 333444555666655 68899999988 599999


Q ss_pred             EEecC--cccccCCceEeCC-CCC-CCCeEEEEEEeCCcCC-CCCCCCeEEEecCCCCCcCCCceEEEEeCCCCCCCccc
Q 044448          226 AIDAT--WFNFYHGGVFTGP-CGN-TPNHGVTIVGYGTTTE-AEGQQPYWLVKNRWGTNWDEGGSMRIFRGVGGSGLCNI  300 (308)
Q Consensus       226 ~i~~~--~f~~y~~Giy~~~-c~~-~~~Hav~iVGyg~~~~-~~~g~~ywivkNSWG~~WGe~Gy~~i~~~~~~~~~Cgi  300 (308)
                      +|++.  .|+.|++|||..+ |+. .++|||+|||||.+.. .+ +++|||||||||++|||+|||||+|+..  |+|||
T Consensus       231 ~i~~~~~~f~~y~~Gi~~~~~c~~~~~nHaV~iVGyG~d~~~~~-g~~YWIikNSWG~~WGe~GY~ri~r~~~--n~CGI  307 (316)
T d1cs8a_         231 AIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESD-NNKYWLVKNSWGEEWGMGGYVKMAKDRR--NHCGI  307 (316)
T ss_dssp             EECCCSHHHHTEEEEEECCTTCCSSCCCEEEEEEEEEEECCSSC-CEEEEEEECSBCTTSTBTTEEEEECSSS--SGGGT
T ss_pred             EEEeccchhccccCCcccCCCCCCCcCCEEEEEEEEcccccCCC-CCeEEEEEeCCCCCcccCCEEEEeeCCC--CcCcc
Confidence            99987  7999999999887 764 5899999999996521 25 7899999999999999999999999863  89999


Q ss_pred             cccccccC
Q 044448          301 AANAAYPL  308 (308)
Q Consensus       301 ~~~~~yp~  308 (308)
                      ++.++||+
T Consensus       308 ~~~~~yP~  315 (316)
T d1cs8a_         308 ASAASYPT  315 (316)
T ss_dssp             TTSCEEEC
T ss_pred             CCeeeeee
Confidence            99999997
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1 {House-dust mite (Dermatophagoides pteronyssinus) [TaxId: 6956]} Back     information, alignment and structure
>d1ppoa_ d.3.1.1 (A:) Caricain (protease omega) {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1yala_ d.3.1.1 (A:) Chymopapain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d1cqda_ d.3.1.1 (A:) Proline-specific cysteine protease {Ginger rhizome (Zingiber officinale) [TaxId: 94328]} Back     information, alignment and structure
>d1s4va_ d.3.1.1 (A:) Vignain (bean endopeptidase) {Castor bean (Ricinus communis) [TaxId: 3988]} Back     information, alignment and structure
>d2h7ja1 d.3.1.1 (A:1-217) (Pro)cathepsin S {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1khqa_ d.3.1.1 (A:) Papain {Papaya (Carica papaya) [TaxId: 3649]} Back     information, alignment and structure
>d2r6na1 d.3.1.1 (A:1-215) (Pro)cathepsin K {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o0ea_ d.3.1.1 (A:) Ervatamin C {East indian rosebay (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1iwda_ d.3.1.1 (A:) Ervatamin B {Adam's apple (Ervatamia coronaria) [TaxId: 52861]} Back     information, alignment and structure
>d1fh0a_ d.3.1.1 (A:) (Pro)cathepsin V {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aeca_ d.3.1.1 (A:) Actinidin {Chinese gooseberry or kiwifruit (Actinidia chinensis) [TaxId: 3625]} Back     information, alignment and structure
>d1m6da_ d.3.1.1 (A:) Cathepsin F {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1me4a_ d.3.1.1 (A:) Cruzain {Trypanosoma cruzi [TaxId: 5693]} Back     information, alignment and structure
>d1deua_ d.3.1.1 (A:) (Pro)cathepsin X {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gmya_ d.3.1.1 (A:) (Pro)cathepsin B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3gcba_ d.3.1.1 (A:) Bleomycin hydrolase {Baker's yeast (Saccharomyces cerevisiae), Gal6 [TaxId: 4932]} Back     information, alignment and structure
>d2cb5a_ d.3.1.1 (A:) Bleomycin hydrolase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pxva_ d.3.1.1 (A:) Staphopain SspB {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1cv8a_ d.3.1.1 (A:) Staphopain StpA {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure