Citrus Sinensis ID: 044482
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | 2.2.26 [Sep-21-2011] | |||||||
| Q9XGW0 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.605 | 0.578 | 0.462 | 1e-48 | |
| Q8LL87 | 350 | Caffeic acid 3-O-methyltr | N/A | no | 0.605 | 0.597 | 0.444 | 2e-47 | |
| Q8W013 | 363 | Caffeic acid 3-O-methyltr | N/A | no | 0.550 | 0.523 | 0.492 | 3e-47 | |
| Q9FK25 | 363 | Flavone 3'-O-methyltransf | yes | no | 0.553 | 0.526 | 0.474 | 7e-47 | |
| Q6T1F5 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.553 | 0.523 | 0.464 | 1e-46 | |
| Q9FQY8 | 359 | Caffeic acid 3-O-methyltr | N/A | no | 0.553 | 0.532 | 0.484 | 2e-46 | |
| Q9XGV9 | 361 | Caffeic acid 3-O-methyltr | N/A | no | 0.605 | 0.578 | 0.435 | 4e-46 | |
| O23760 | 370 | Caffeic acid 3-O-methyltr | N/A | no | 0.553 | 0.516 | 0.484 | 6e-46 | |
| Q8GU25 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.605 | 0.572 | 0.458 | 7e-46 | |
| Q43609 | 365 | Caffeic acid 3-O-methyltr | N/A | no | 0.605 | 0.572 | 0.458 | 1e-45 |
| >sp|Q9XGW0|COMT1_OCIBA Caffeic acid 3-O-methyltransferase 1 OS=Ocimum basilicum GN=COMT1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 193 bits (491), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FNQ M NH+ I MKKILE Y GF LK +VDV
Sbjct: 150 IPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGT 209
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++IV+ YP I GINFDLP+VI++AP VEHV GDMFV+VP G AIF K + +W
Sbjct: 210 GATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDW 269
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SDE C+K LKNCYDALP++ K + ++ LPE+P+ +N++ +D++M P
Sbjct: 270 SDEHCVKFLKNCYDALPQNGK----VILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGG 325
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ LA AAGF C +Y W++E K
Sbjct: 326 KERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 6EC: 8 |
| >sp|Q8LL87|COMT1_COFCA Caffeic acid 3-O-methyltransferase OS=Coffea canephora PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (480), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FNQ M NH+ I MKKILE+Y+GF+ LK +VDV
Sbjct: 139 IPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGT 198
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++I++ YP I GINF+LP+V+++AP VEHV GDMFV+VP G AIF K + +W
Sbjct: 199 GATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDW 258
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SD+ C K+LKNCY ALP + K + ++ LPE+P+ S +N++ +D+VM P
Sbjct: 259 SDDHCRKLLKNCYQALPDNGK----VILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGG 314
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALA AGF + +C + W++E K
Sbjct: 315 KERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Coffea canephora (taxid: 49390) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8W013|COMT1_CATRO Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 189 bits (479), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 134/199 (67%), Gaps = 9/199 (4%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FNQ M NH+ I+MKKILEIY+GF+ LK +VDV GA +++IV+ YP I GIN
Sbjct: 170 PRFNKVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGIN 229
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP V+HV GDMFV+VP G AIF K + +WSD CLK LKNC++ALP+
Sbjct: 230 FDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPE 289
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF- 324
+ K + ++ LPE+P+ + +N + +D++M P K RT EF+ALA AGF
Sbjct: 290 NGK----VILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFR 345
Query: 325 GTIKVICRSYCYWVIEFYK 343
G IKV C +Y W++E K
Sbjct: 346 GFIKVCC-AYNSWIMELLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Catharanthus roseus (taxid: 4058) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FK25|OMT1_ARATH Flavone 3'-O-methyltransferase 1 OS=Arabidopsis thaliana GN=OMT1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (476), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/198 (47%), Positives = 129/198 (65%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN M NH+ I MKKILE YKGF+ L LVDV +GA + +IV+ YP + GIN
Sbjct: 168 PRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGIN 227
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP +EHV GDMFV+VP G AIF K + +WSDE C+K LKNCY++LP+
Sbjct: 228 FDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPE 287
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
K + ++ LPE+P+ S + ++ +D +M P K RT EF+ALA A+GF
Sbjct: 288 DGK----VILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFK 343
Query: 326 TIKVICRSYCYWVIEFYK 343
IKV+C ++ +IE K
Sbjct: 344 GIKVVCDAFGVNLIELLK 361
|
Methylates OH residues of flavonoid compounds. Substrate preference is quercetin > myricetin >> luteolin. Dihydroquercetin is not a substrate. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 7 EC: 6 |
| >sp|Q6T1F5|COMT1_AMMMJ Caffeic acid 3-O-methyltransferase OS=Ammi majus GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 124/198 (62%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FNQ M NH+ I MKKIL+ Y GF LK +VDV GA +++I++ YP + GIN
Sbjct: 172 PRFNKVFNQGMSNHSTITMKKILQTYDGFGGLKTVVDVGGGTGATLNMIISKYPNLKGIN 231
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+V+++AP VEHV GDMFV+VP G AIF K + +WSD CL LKNCY ALPK
Sbjct: 232 FDLPHVVEDAPSYAGVEHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLAFLKNCYKALPK 291
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
K + ++ LPE+P+ +N++ +D++M P K RT EF+A AGF
Sbjct: 292 DGK----VILAECILPEAPDSKLTTKNVILIDVIMLAHNPGGKERTEKEFEAFGKQAGFK 347
Query: 326 TIKVICRSYCYWVIEFYK 343
+ C +Y WVIE+YK
Sbjct: 348 SFNKACCAYNTWVIEYYK 365
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ammi majus (taxid: 48026) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9FQY8|COMT1_CAPAN Caffeic acid 3-O-methyltransferase OS=Capsicum annuum GN=COMT PE=2 SV=2 | Back alignment and function description |
|---|
Score = 186 bits (472), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 128/198 (64%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN+ M +H+ + MKKILE YKGF+ L +VDV GA +++IV+ YP I GIN
Sbjct: 166 PRFNKVFNRGMSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGIN 225
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDL +VI++AP VEHV DMFV+VP AIF K + +WSDE CLK LKNCY+ALP
Sbjct: 226 FDLSHVIEDAPAYPGVEHVGRDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPA 285
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
+ K L ++ LPE+P+ S+ +N + +DIVM P K RT EF+ALA AGF
Sbjct: 286 NGK----VLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFT 341
Query: 326 TIKVICRSYCYWVIEFYK 343
+ C +Y WV+EF+K
Sbjct: 342 GFRRACCAYQTWVMEFHK 359
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Capsicum annuum (taxid: 4072) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q9XGV9|COMT2_OCIBA Caffeic acid 3-O-methyltransferase 2 OS=Ocimum basilicum GN=COMT2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 185 bits (470), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 94/216 (43%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FNQ M NH+ I MKKILE Y GF LK +VDV
Sbjct: 150 IPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGT 209
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++I++ YP I GINFDLP+V+++AP VEHV GDMFV+VP G AIF K + +W
Sbjct: 210 GATLNMIISKYPSIKGINFDLPHVVEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDW 269
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SD C+K LK CY+ALP++ K + ++ LPE+P+ +N++ +D++M P
Sbjct: 270 SDAHCVKFLKKCYEALPENGK----VILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGG 325
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ LA A+GF +C +Y W++E K
Sbjct: 326 KERTEKEFQVLAKASGFKQFNKVCCAYNSWIMELLK 361
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Ocimum basilicum (taxid: 39350) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|O23760|COMT1_CLABR Caffeic acid 3-O-methyltransferase OS=Clarkia breweri GN=COMT PE=1 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (468), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 128/198 (64%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN+ M +H+ I MKKI E+Y GF+ L +VDV GA +S+IV YP I GIN
Sbjct: 175 PRFNKVFNRGMSDHSTITMKKIFEMYTGFEALNTIVDVGGGTGAVLSMIVAKYPSIKGIN 234
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP VEHV GDMFV+VP G AIF K + +WSDE CLK LKNCY ALP
Sbjct: 235 FDLPHVIEDAPIYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYAALP- 293
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
+HG+ + ++ LP SP+ S + ++ +D +M P K RT EF+ALA+ AGF
Sbjct: 294 --EHGKV-IVAECILPLSPDPSLATKGVIHIDAIMLAHNPGGKERTEKEFEALAIGAGFK 350
Query: 326 TIKVICRSYCYWVIEFYK 343
KV C ++ +V+EF K
Sbjct: 351 GFKVACCAFNTYVMEFLK 368
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Clarkia breweri (taxid: 36903) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q8GU25|COMT1_ROSCH Caffeic acid 3-O-methyltransferase OS=Rosa chinensis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (468), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 133/216 (61%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FN+ M +H+ I MKKILE YKGF+ L +VDV
Sbjct: 152 IPFNKAYGMTAFDYHGTDPRFNKVFNKGMADHSTITMKKILETYKGFEGLTSIVDVGGGT 211
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++IV+ YP I GINFDLP+VI++A P V+HV GDMFV+VP G AIF K + +W
Sbjct: 212 GAVVNMIVSKYPSIKGINFDLPHVIEDAPQYPGVQHVGGDMFVSVPKGDAIFMKWICHDW 271
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SDE CLK LKNCY ALP + K + + LP +P+ S + ++ +D+VM P
Sbjct: 272 SDEHCLKFLKNCYAALPDNGK----VILGECILPVAPDTSLATKGVVHIDVVMLAHNPGG 327
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALA +GF I+V C ++ +VIEF K
Sbjct: 328 KERTEQEFEALAKGSGFQGIRVACNAFNTYVIEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Rosa chinensis (taxid: 74649) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
| >sp|Q43609|COMT1_PRUDU Caffeic acid 3-O-methyltransferase OS=Prunus dulcis GN=COMT1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 184 bits (466), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 131/216 (60%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FN+ M +H+ I MKKILE YKGF+ L +VDV
Sbjct: 152 IPFNKAYGMTAFEYHGTDPRFNKVFNRGMADHSTITMKKILETYKGFEGLTSVVDVGGGT 211
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++IV+ YP I GINFDLP+VI++A P VEHV GDMFV+VP G AIF K + +W
Sbjct: 212 GAVLNMIVSKYPSIKGINFDLPHVIEDAPQYPGVEHVGGDMFVSVPKGDAIFMKWICHDW 271
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SDE CLK LKNCY ALP + K + + LP +P+ S + ++ +D++M P
Sbjct: 272 SDEHCLKFLKNCYAALPDNGK----VILGECILPVAPDSSLATKGVVHIDVIMLAHNPGG 327
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALA AGF V C ++ +VIEF K
Sbjct: 328 KERTEQEFQALAKGAGFQGFNVACSAFNTYVIEFLK 363
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Catalyzes the conversion of caffeic acid to ferulic acid and of 5-hydroxyferulic acid to sinapic acid. The resulting products may subsequently be converted to the corresponding alcohols that are incorporated into lignins. Prunus dulcis (taxid: 3755) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: 6 EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| 29839421 | 361 | RecName: Full=Caffeic acid 3-O-methyltra | 0.605 | 0.578 | 0.462 | 9e-47 | |
| 345651709 | 364 | caffeic acid O-methyltransferase [Salvia | 0.553 | 0.524 | 0.484 | 2e-46 | |
| 97974184 | 364 | Caffeic acid 3-O-methyltransferase [Ipom | 0.605 | 0.574 | 0.458 | 2e-46 | |
| 345651711 | 364 | caffeic acid O-methyltransferase [Salvia | 0.553 | 0.524 | 0.484 | 3e-46 | |
| 97974173 | 364 | Caffeic acid 3-O-methyltransferase [Ipom | 0.605 | 0.574 | 0.453 | 5e-46 | |
| 12003964 | 359 | caffeic acid O-methyltransferase [Capsic | 0.553 | 0.532 | 0.489 | 1e-45 | |
| 29839361 | 350 | RecName: Full=Caffeic acid 3-O-methyltra | 0.605 | 0.597 | 0.444 | 1e-45 | |
| 312283309 | 364 | unnamed protein product [Thellungiella h | 0.542 | 0.513 | 0.479 | 2e-45 | |
| 29839377 | 363 | RecName: Full=Caffeic acid 3-O-methyltra | 0.550 | 0.523 | 0.492 | 2e-45 | |
| 297792849 | 363 | O-methyltransferase 1 [Arabidopsis lyrat | 0.553 | 0.526 | 0.479 | 2e-45 |
| >gi|29839421|sp|Q9XGW0.1|COMT1_OCIBA RecName: Full=Caffeic acid 3-O-methyltransferase 1; Short=CAOMT-1; Short=COMT-1; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase 1 gi|5031492|gb|AAD38189.1|AF154917_1 caffeic acid O-methyltransferase [Ocimum basilicum] | Back alignment and taxonomy information |
|---|
Score = 193 bits (491), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 100/216 (46%), Positives = 132/216 (61%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FNQ M NH+ I MKKILE Y GF LK +VDV
Sbjct: 150 IPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILETYTGFDGLKTVVDVGGGT 209
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++IV+ YP I GINFDLP+VI++AP VEHV GDMFV+VP G AIF K + +W
Sbjct: 210 GATLNMIVSKYPSIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDW 269
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SDE C+K LKNCYDALP++ K + ++ LPE+P+ +N++ +D++M P
Sbjct: 270 SDEHCVKFLKNCYDALPQNGK----VILAECVLPEAPDTGLATKNVVHIDVIMLAHNPGG 325
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ LA AAGF C +Y W++E K
Sbjct: 326 KERTEKEFQGLAKAAGFKQFNKACCAYNTWIMELLK 361
|
Source: Ocimum basilicum Species: Ocimum basilicum Genus: Ocimum Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345651709|gb|AEO14870.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza] | Back alignment and taxonomy information |
|---|
Score = 192 bits (488), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 127/198 (64%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FNQ M H+ I MKKILE YKGF L +VDV +GA + +IV+ YP I GIN
Sbjct: 171 PRFNKVFNQGMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSIKGIN 230
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP VEHV GDMFV+VP G AIF K + +WSDE CLK LKNCYDALP+
Sbjct: 231 FDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYDALPQ 290
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
+ K + ++ LPE+P+ ++N++ +D++M P K RT EF LA AAGF
Sbjct: 291 NGK----VILAECVLPEAPDSGLASKNVVHIDVIMLAHNPGGKERTEKEFHNLAKAAGFK 346
Query: 326 TIKVICRSYCYWVIEFYK 343
+ C +Y W++E K
Sbjct: 347 HLNKACCAYNTWILELLK 364
|
Source: Salvia miltiorrhiza Species: Salvia miltiorrhiza Genus: Salvia Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|97974184|dbj|BAE94403.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil] | Back alignment and taxonomy information |
|---|
Score = 192 bits (487), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 99/216 (45%), Positives = 136/216 (62%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FN+ M +H+ I MKKIL+ YKGF+ LK LVDV
Sbjct: 153 IPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKILDDYKGFEGLKSLVDVGGGT 212
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++I++ YP I GINFDLP+VI++A P +EHV GDMFV+VP G AIF K + +W
Sbjct: 213 GATLNMILSKYPNIKGINFDLPHVIEDAPKYPGIEHVGGDMFVSVPKGDAIFMKWICHDW 272
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SD CLK LKNCYDALP++ K + ++ LPESP+ S +N++ +D++M P
Sbjct: 273 SDAHCLKFLKNCYDALPENGK----VIVAECNLPESPDTSLATKNVVHIDVIMLAHNPGG 328
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALAM +GF + C + W++EF K
Sbjct: 329 KERTEKEFEALAMGSGFRHFRKACCAVNTWIMEFCK 364
|
Source: Ipomoea nil Species: Ipomoea nil Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|345651711|gb|AEO14871.1| caffeic acid O-methyltransferase [Salvia miltiorrhiza] | Back alignment and taxonomy information |
|---|
Score = 192 bits (487), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/198 (48%), Positives = 126/198 (63%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FNQ M H+ I MKKILE YKGF L +VDV +GA + +IV+ YP I GIN
Sbjct: 171 PRFNKVFNQGMSGHSTITMKKILETYKGFDGLNSVVDVGGGIGATLHMIVSKYPSIKGIN 230
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP VEHV GDMFV+VP G AIF K + +WSDE CLK LKNCYDALP+
Sbjct: 231 FDLPHVIEDAPSYPGVEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCLKFLKNCYDALPQ 290
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
+ K + ++ LPE+P+ +N++ +D++M P K RT EF LA AAGF
Sbjct: 291 NGK----VILAECVLPEAPDSGLATKNVVHIDVIMLAHNPGGKERTEKEFHNLAKAAGFK 346
Query: 326 TIKVICRSYCYWVIEFYK 343
+ C +Y W++E K
Sbjct: 347 HLNKACCAYNTWILELLK 364
|
Source: Salvia miltiorrhiza Species: Salvia miltiorrhiza Genus: Salvia Family: Lamiaceae Order: Lamiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|97974173|dbj|BAE94400.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil] gi|97974195|dbj|BAE94406.1| Caffeic acid 3-O-methyltransferase [Ipomoea nil] | Back alignment and taxonomy information |
|---|
Score = 191 bits (484), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/216 (45%), Positives = 136/216 (62%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FN+ M +H+ I MKKIL+ YKGF+ LK LVDV
Sbjct: 153 IPFNKAYGMTAFEYHGTDPRFNKVFNRGMSDHSTITMKKILDDYKGFEGLKSLVDVGGGT 212
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++I++ YP I GINFDLP+VI+++ P +EHV GDMFV+VP G AIF K + +W
Sbjct: 213 GATLNMILSKYPNIKGINFDLPHVIEDSPKYPGIEHVGGDMFVSVPKGDAIFMKWICHDW 272
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SD CLK LKNCYDALP++ K + ++ LPESP+ S +N++ +D++M P
Sbjct: 273 SDAHCLKFLKNCYDALPENGK----VIVAECNLPESPDTSLATKNVVHIDVIMLAHNPGG 328
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALAM +GF + C + W++EF K
Sbjct: 329 KERTEKEFEALAMGSGFRHFRKACCAVNTWIMEFCK 364
|
Source: Ipomoea nil Species: Ipomoea nil Genus: Ipomoea Family: Convolvulaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|12003964|gb|AAG43822.1|AF212316_1 caffeic acid O-methyltransferase [Capsicum annuum] | Back alignment and taxonomy information |
|---|
Score = 189 bits (481), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 97/198 (48%), Positives = 129/198 (65%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN+ M +H+ + MKKILE YKGF+ L +VDV GA +++IV+ YP I GIN
Sbjct: 166 PRFNKVFNRGMSDHSTMTMKKILEDYKGFEGLNSIVDVGGGTGATVNMIVSKYPSIKGIN 225
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDL +VI++AP VEHV GDMFV+VP AIF K + +WSDE CLK LKNCY+ALP
Sbjct: 226 FDLSHVIEDAPAYPGVEHVGGDMFVSVPKADAIFMKWICHDWSDEHCLKFLKNCYEALPA 285
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
+ K L ++ LPE+P+ S+ +N + +DIVM P K RT EF+ALA AGF
Sbjct: 286 NGK----VLVAECILPETPDTSAATKNAVHVDIVMLAHNPGGKERTEKEFEALAKGAGFT 341
Query: 326 TIKVICRSYCYWVIEFYK 343
+ C +Y WV+EF+K
Sbjct: 342 GFRRACCAYQTWVMEFHK 359
|
Source: Capsicum annuum Species: Capsicum annuum Genus: Capsicum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29839361|sp|Q8LL87.1|COMT1_COFCA RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|22652502|gb|AAN03727.1| caffeic acid O-methyltransferase [Coffea canephora] | Back alignment and taxonomy information |
|---|
Score = 189 bits (480), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 135/216 (62%), Gaps = 7/216 (3%)
Query: 131 IEFYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCL 190
I F K + Y P +FNQ M NH+ I MKKILE+Y+GF+ LK +VDV
Sbjct: 139 IPFNKAYGMTAFEYHGTDPRFNKVFNQGMSNHSTITMKKILEVYRGFEGLKTVVDVGGGT 198
Query: 191 GANMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNW 247
GA +++I++ YP I GINF+LP+V+++AP VEHV GDMFV+VP G AIF K + +W
Sbjct: 199 GATLNMIISKYPTIKGINFELPHVVEDAPSHSGVEHVGGDMFVSVPKGDAIFMKWICHDW 258
Query: 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
SD+ C K+LKNCY ALP + K + ++ LPE+P+ S +N++ +D+VM P
Sbjct: 259 SDDHCRKLLKNCYQALPDNGK----VILAECVLPEAPDTSLATQNVVHVDVVMLAHNPGG 314
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
K RT EF+ALA AGF + +C + W++E K
Sbjct: 315 KERTEKEFEALAKGAGFKEFRKVCSAVNTWIMELCK 350
|
Source: Coffea canephora Species: Coffea canephora Genus: Coffea Family: Rubiaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|312283309|dbj|BAJ34520.1| unnamed protein product [Thellungiella halophila] | Back alignment and taxonomy information |
|---|
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/194 (47%), Positives = 127/194 (65%), Gaps = 7/194 (3%)
Query: 153 NLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP 212
+FN M NH+ I MKKILE YKGF+ L LVDV +GA + +I++ YP + GINFDLP
Sbjct: 173 TVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMILSKYPNLKGINFDLP 232
Query: 213 YVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH 269
+VI+ A P +EHV GDMFV+VP G AIF K + +WSDE C+K LKNCY+ALP+ K
Sbjct: 233 HVIEEATSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYEALPEDGK- 291
Query: 270 GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
+ ++ LPE+P+ S + ++ +D +M P K RT EFKALA +GF IKV
Sbjct: 292 ---VILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFKALAKGSGFKGIKV 348
Query: 330 ICRSYCYWVIEFYK 343
+C ++ ++IE K
Sbjct: 349 VCNAFGVYIIELLK 362
|
Source: Thellungiella halophila Species: Eutrema halophilum Genus: Eutrema Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|29839377|sp|Q8W013.1|COMT1_CATRO RecName: Full=Caffeic acid 3-O-methyltransferase; Short=CAOMT; Short=COMT; AltName: Full=S-adenosysl-L-methionine:caffeic acid 3-O-methyltransferase gi|18025321|gb|AAK20170.1| caffeic acid O-methyltransferase [Catharanthus roseus] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 98/199 (49%), Positives = 134/199 (67%), Gaps = 9/199 (4%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FNQ M NH+ I+MKKILEIY+GF+ LK +VDV GA +++IV+ YP I GIN
Sbjct: 170 PRFNKVFNQGMSNHSTIIMKKILEIYQGFQGLKTVVDVGGGTGATLNMIVSKYPSIKGIN 229
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP V+HV GDMFV+VP G AIF K + +WSD CLK LKNC++ALP+
Sbjct: 230 FDLPHVIEDAPSYPGVDHVGGDMFVSVPKGDAIFMKWICHDWSDAHCLKFLKNCHEALPE 289
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF- 324
+ K + ++ LPE+P+ + +N + +D++M P K RT EF+ALA AGF
Sbjct: 290 NGK----VILAECLLPEAPDSTLSTQNTVHVDVIMLAHNPGGKERTEKEFEALAKGAGFR 345
Query: 325 GTIKVICRSYCYWVIEFYK 343
G IKV C +Y W++E K
Sbjct: 346 GFIKVCC-AYNSWIMELLK 363
|
Source: Catharanthus roseus Species: Catharanthus roseus Genus: Catharanthus Family: Apocynaceae Order: Gentianales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297792849|ref|XP_002864309.1| O-methyltransferase 1 [Arabidopsis lyrata subsp. lyrata] gi|297310144|gb|EFH40568.1| O-methyltransferase 1 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/198 (47%), Positives = 129/198 (65%), Gaps = 7/198 (3%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN M NH+ I MKKILE YKGF+ L LVDV +GA + +IV+ YP + GIN
Sbjct: 168 PRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGIN 227
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP +EHV GDMFV+VP G AIF K + +WSDE C+K LKNCY+ALP+
Sbjct: 228 FDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYEALPE 287
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
K + ++ LPE+P+ S + ++ +D +M P K RT EF+ALA A+GF
Sbjct: 288 DGK----VILAECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFK 343
Query: 326 TIKVICRSYCYWVIEFYK 343
IKV+C ++ +IE K
Sbjct: 344 GIKVVCDAFGVNLIELLK 361
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 345 | ||||||
| TAIR|locus:2153423 | 363 | OMT1 "AT5G54160" [Arabidopsis | 0.553 | 0.526 | 0.479 | 1.7e-43 | |
| TAIR|locus:2034016 | 363 | AT1G51990 [Arabidopsis thalian | 0.568 | 0.539 | 0.445 | 5.3e-40 | |
| UNIPROTKB|Q84N28 | 360 | OMT1 "Flavone O-methyltransfer | 0.544 | 0.522 | 0.457 | 1.5e-37 | |
| TAIR|locus:2199607 | 373 | IGMT1 "indole glucosinolate O- | 0.533 | 0.493 | 0.443 | 1.9e-37 | |
| TAIR|locus:2199582 | 373 | IGMT4 "indole glucosinolate O- | 0.533 | 0.493 | 0.443 | 3e-37 | |
| TAIR|locus:2204695 | 381 | AT1G77530 [Arabidopsis thalian | 0.6 | 0.543 | 0.397 | 3.9e-37 | |
| TAIR|locus:2204680 | 381 | AT1G77520 [Arabidopsis thalian | 0.597 | 0.540 | 0.381 | 3.9e-37 | |
| TAIR|locus:2199597 | 373 | IGMT3 "indole glucosinolate O- | 0.533 | 0.493 | 0.432 | 1e-36 | |
| UNIPROTKB|Q6ZD89 | 368 | ROMT-9 "Flavone 3'-O-methyltra | 0.530 | 0.497 | 0.436 | 1.3e-36 | |
| TAIR|locus:2199587 | 373 | IGMT2 "indole glucosinolate O- | 0.533 | 0.493 | 0.432 | 5.7e-36 |
| TAIR|locus:2153423 OMT1 "AT5G54160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 459 (166.6 bits), Expect = 1.7e-43, P = 1.7e-43
Identities = 95/198 (47%), Positives = 130/198 (65%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN M NH+ I MKKILE YKGF+ L LVDV +GA + +IV+ YP + GIN
Sbjct: 168 PRFNKVFNNGMSNHSTITMKKILETYKGFEGLTSLVDVGGGIGATLKMIVSKYPNLKGIN 227
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI++AP +EHV GDMFV+VP G AIF K + +WSDE C+K LKNCY++LP+
Sbjct: 228 FDLPHVIEDAPSHPGIEHVGGDMFVSVPKGDAIFMKWICHDWSDEHCVKFLKNCYESLPE 287
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
G+ L ++ LPE+P+ S + ++ +D +M P K RT EF+ALA A+GF
Sbjct: 288 D---GKVIL-AECILPETPDSSLSTKQVVHVDCIMLAHNPGGKERTEKEFEALAKASGFK 343
Query: 326 TIKVICRSYCYWVIEFYK 343
IKV+C ++ +IE K
Sbjct: 344 GIKVVCDAFGVNLIELLK 361
|
|
| TAIR|locus:2034016 AT1G51990 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
Identities = 90/202 (44%), Positives = 124/202 (61%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y+ + +FN+SM NHT+IVMKKILE Y GF+ + VDV LG+N++ I++ YP
Sbjct: 163 YMKKNENLKKIFNESMTNHTSIVMKKILENYIGFEGVSDFVDVGGSLGSNLAQILSKYPH 222
Query: 204 ITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I GINFDLP+++K AP VEH+ GDMF +P G+ I K +L +W+DE+C++ILKNC
Sbjct: 223 IKGINFDLPHIVKEAPQIHGVEHIGGDMFDEIPRGEVILMKWILHDWNDEKCVEILKNCK 282
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
ALP++ GR + E E +N L+ D+ M L K RT EF+ LA
Sbjct: 283 KALPET---GRIIVIEMIVPREVSETDLATKNSLSADLTMMSLTSGGKERTKKEFEDLAK 339
Query: 321 AAGFGTIKVICRSYCYWVIEFY 342
AGF K+I +Y YW+IE Y
Sbjct: 340 EAGFKLPKIIYGAYSYWIIELY 361
|
|
| UNIPROTKB|Q84N28 OMT1 "Flavone O-methyltransferase 1" [Triticum aestivum (taxid:4565)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 92/201 (45%), Positives = 120/201 (59%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
P +FN+ M+NH+ I+ KK+LE+YKGF+ L +VDV +GA + I YP I GIN
Sbjct: 167 PRFNRVFNEGMKNHSIIITKKLLEVYKGFEGLGTIVDVGGGVGATVGAITAAYPAIKGIN 226
Query: 209 FDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FDLP+VI A P V HV GDMF VPSG AI K +L +WSDE C +LKNCYDALP
Sbjct: 227 FDLPHVISEAQPFPGVTHVGGDMFQKVPSGDAILMKWILHDWSDEHCATLLKNCYDALPA 286
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
HG+ L + LP +PE + + + +D++M P + R EF+ALA AGF
Sbjct: 287 ---HGKVVL-VECILPVNPEATPKAQGVFHVDMIMLAHNPGGRERYEREFEALAKGAGFK 342
Query: 326 TIKVICRSYCY---WVIEFYK 343
IK +Y Y + IEF K
Sbjct: 343 AIKT---TYIYANAFAIEFTK 360
|
|
| TAIR|locus:2199607 IGMT1 "indole glucosinolate O-methyltransferase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 86/194 (44%), Positives = 122/194 (62%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
LFNQ+ T V+KK LE+Y+GFK +K LVDV +G + ++ + YP I GINFDL
Sbjct: 186 LFNQT--GFTIAVVKKALEVYEGFKGVKVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTC 243
Query: 214 VIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270
+ AP VEHV GDMFV+VP+G A+ K +L +W+DE C+KILKNC+ +LP++ K
Sbjct: 244 ALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVV 303
Query: 271 RTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
+L + P+ E IN NI +D++M+ K R+ EF+ALA A+GF K
Sbjct: 304 VIELVT----PDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKF 359
Query: 330 ICRSYCYWVIEFYK 343
+C++Y W+IEF K
Sbjct: 360 VCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2199582 IGMT4 "indole glucosinolate O-methyltransferase 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 86/194 (44%), Positives = 121/194 (62%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
LFNQ+ T V+KK LE+Y+GFK + LVDV +G + ++ + YP I GINFDL
Sbjct: 186 LFNQT--GFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVASKYPNIKGINFDLTC 243
Query: 214 VIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270
+ AP VEHV GDMFV+VP+G A+ K +L +W+DE C+KILKNC+ +LP+S K
Sbjct: 244 ALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPESGKVV 303
Query: 271 RTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
+L + P+ E IN NI +D++M+ K R+ EF+ALA A+GF K
Sbjct: 304 VIELVT----PDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFTHCKF 359
Query: 330 ICRSYCYWVIEFYK 343
+C++Y W+IEF K
Sbjct: 360 VCQAYHCWIIEFCK 373
|
|
| TAIR|locus:2204695 AT1G77530 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 85/214 (39%), Positives = 128/214 (59%)
Query: 134 YKTMHIMDCI-YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGA 192
+ + H M Y++ LF+++M + +VMKK+LE Y+GF+++ LVDV +G
Sbjct: 171 FSSAHDMRLFEYISSDDQFSKLFHRAMSESSTMVMKKVLEEYRGFEDVNTLVDVGGGIGT 230
Query: 193 NMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSD 249
+ LI + YP I G+NFDL V+ AP V+HV GDMF+ VP G AIF K +L +W D
Sbjct: 231 ILGLITSKYPHIKGVNFDLAQVLTQAPFYPGVKHVSGDMFIEVPKGDAIFMKWILHDWGD 290
Query: 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG 309
E C+KILKNC+ +LP+ K ++ + P+ +FS +L +D++M K
Sbjct: 291 EDCIKILKNCWKSLPEKGKVIIVEMITPME-PKPNDFSC--NTVLGMDLLMLTQCSGGKE 347
Query: 310 RTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
R+ +F+ LA A+GF ++IC SY Y VIEF+K
Sbjct: 348 RSLSQFENLAFASGFLLCEIICLSYSYSVIEFHK 381
|
|
| TAIR|locus:2204680 AT1G77520 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
Identities = 82/215 (38%), Positives = 127/215 (59%)
Query: 134 YKTMHIMDCI-YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGA 192
+ + H M Y+ LFN++M + ++MKK+L++Y+GF+++ LVDV G
Sbjct: 171 FNSAHGMKIFEYINSDQPFAELFNRAMSEPSTMIMKKVLDVYRGFEDVNTLVDVGGGNGT 230
Query: 193 NMSLIVNTYPQITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSD 249
+ L+ + YP I G+NFDL V+ AP VEHV GDMFV VP G A+F K +L +W D
Sbjct: 231 VLGLVTSKYPHIKGVNFDLAQVLTQAPFYPGVEHVSGDMFVEVPKGDAVFMKWILHDWGD 290
Query: 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN-ILTLDIVMYDLFPQAK 308
E C+KILKNC+ +LP+ K + + P+ P+ ++ N + +D++M K
Sbjct: 291 EDCIKILKNCWKSLPEKGKIIIVEFVT----PKEPKGGDLSSNTVFAMDLLMLTQCSGGK 346
Query: 309 GRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
R+ +F+ LA A+GF ++IC +Y Y VIEF+K
Sbjct: 347 ERSLSQFENLAFASGFLRCEIICLAYSYSVIEFHK 381
|
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| TAIR|locus:2199597 IGMT3 "indole glucosinolate O-methyltransferase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
Identities = 84/194 (43%), Positives = 121/194 (62%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
LFNQ+ T V+KK LE+Y+GFK + LVDV +G + ++ + YP I GINFDL
Sbjct: 186 LFNQT--GFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTC 243
Query: 214 VIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270
+ AP VEHV GDMFV+VP+G A+ K +L +W+DE C+KILKNC+ +LP++ K
Sbjct: 244 ALAQAPTYPGVEHVAGDMFVDVPTGNAMILKRILHDWTDEDCVKILKNCWKSLPQNGKVV 303
Query: 271 RTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
+L + P+ E IN NI +D++M+ K R+ EF+ALA A+GF +
Sbjct: 304 VIELVT----PDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASGFSHCQF 359
Query: 330 ICRSYCYWVIEFYK 343
+C++Y W+IEF K
Sbjct: 360 VCQAYHCWIIEFCK 373
|
|
| UNIPROTKB|Q6ZD89 ROMT-9 "Flavone 3'-O-methyltransferase 1" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
Identities = 86/197 (43%), Positives = 122/197 (61%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
+FN+ M+NH+ I+ KK+L++Y GF +VDV +GA ++ +V+ +P I GIN+DLP+
Sbjct: 179 VFNEGMKNHSVIITKKLLDLYTGFDAASTVVDVGGGVGATVAAVVSRHPHIRGINYDLPH 238
Query: 214 VIKNAPC---VEHVEGDMFVNVP-SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH 269
VI AP VEHV GDMF +VP G AI K +L +WSDE C ++LKNCYDALP+ H
Sbjct: 239 VISEAPPFPGVEHVGGDMFASVPRGGDAILMKWILHDWSDEHCARLLKNCYDALPE---H 295
Query: 270 GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
G+ + + LPES + ++ + + +D++M P K R EF+ LA AAGF K
Sbjct: 296 GKVVV-VECVLPESSDATAREQGVFHVDMIMLAHNPGGKERYEREFRELARAAGFTGFKA 354
Query: 330 ICRSYCY---WVIEFYK 343
+Y Y W IEF K
Sbjct: 355 ---TYIYANAWAIEFTK 368
|
|
| TAIR|locus:2199587 IGMT2 "indole glucosinolate O-methyltransferase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
Identities = 84/194 (43%), Positives = 120/194 (61%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
LFNQ+ T V+KK LE+Y+GFK + LVDV +G + ++ + YP I GINFDL
Sbjct: 186 LFNQT--GFTIAVVKKALEVYQGFKGVNVLVDVGGGVGNTLGVVTSKYPNIKGINFDLTC 243
Query: 214 VIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270
+ AP VEHV GDMFV+VP+G A+ K +L +W+DE C+KILKNC+ +LP++ K
Sbjct: 244 ALAQAPSYPGVEHVAGDMFVDVPTGDAMILKRILHDWTDEDCVKILKNCWKSLPENGKVV 303
Query: 271 RTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329
+L + P+ E IN NI +D++M+ K R+ EF+ALA A+ F K
Sbjct: 304 VIELVT----PDEAENGDINANIAFDMDMLMFTQCSGGKERSRAEFEALAAASCFTHCKF 359
Query: 330 ICRSYCYWVIEFYK 343
+C++Y W+IEF K
Sbjct: 360 VCQAYHCWIIEFCK 373
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00031799001 | SubName- Full=Chromosome chr18 scaffold_59, whole genome shotgun sequence; (502 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 345 | |||
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 7e-51 | |
| pfam00891 | 239 | pfam00891, Methyltransf_2, O-methyltransferase | 5e-20 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 168 bits (429), Expect = 7e-51
Identities = 76/169 (44%), Positives = 97/169 (57%), Gaps = 9/169 (5%)
Query: 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213
+FN++M H+ +VMKKILE F L LVDV GA + IV YP I GI FDLP+
Sbjct: 76 VFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGALAAAIVRAYPHIKGIVFDLPH 135
Query: 214 VIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270
VI +AP VE V GD F +VP AI K VL +WSDE C+KILK CY+ALP G
Sbjct: 136 VIADAPSADRVEFVGGDFFESVPEADAILLKWVLHDWSDEDCVKILKRCYEALP---PGG 192
Query: 271 RTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319
+ + + LPE P+ + +L LD+ M L K RT E++ L
Sbjct: 193 KV-IVVEMVLPEDPD-DDLETEVLLLDLNMLVLNG-GKERTEKEWRKLL 238
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
| >gnl|CDD|216177 pfam00891, Methyltransf_2, O-methyltransferase | Back alignment and domain information |
|---|
Score = 87.3 bits (217), Expect = 5e-20
Identities = 36/90 (40%), Positives = 46/90 (51%), Gaps = 11/90 (12%)
Query: 1 MRAHNGLHLFDYASKDARLQNLFNQSMHNH----------TAIGFEELNELVDVAGGLGV 50
RA G+ F+Y D +FN++M H TA F L+ LVDV GG G
Sbjct: 56 ERAF-GMPFFEYLGADPEFNRVFNRAMAAHSRLVMKKILETAFDFSGLSSLVDVGGGTGA 114
Query: 51 NMSLIVNTYSQIRGINFDLPHVIENASSSP 80
+ IV Y I+GI FDLPHVI +A S+
Sbjct: 115 LAAAIVRAYPHIKGIVFDLPHVIADAPSAD 144
|
This family includes a range of O-methyltransferases. These enzymes utilise S-adenosyl methionine. Length = 239 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 100.0 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 100.0 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 100.0 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.79 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.76 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.75 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.74 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.74 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.72 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.72 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.7 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.69 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.67 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.66 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.63 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.62 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.62 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.61 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.61 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.59 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.59 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.57 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.57 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.56 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.56 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.56 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.56 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.56 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.53 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.52 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.52 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.52 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.51 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.5 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.5 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.49 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.48 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.45 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.43 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.43 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.43 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.42 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.42 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.42 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.42 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.42 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.41 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.41 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.4 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.4 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.36 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.34 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.3 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.3 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.29 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.28 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.28 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.27 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.27 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.27 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.26 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.25 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.24 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.24 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.2 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.2 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.19 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.18 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.17 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.16 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.16 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.14 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.14 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.14 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.13 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.12 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 99.1 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.1 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.09 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.09 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.08 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.08 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.07 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.02 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.99 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 98.99 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.98 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.98 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.98 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.98 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.95 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 98.94 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 98.93 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.92 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 98.92 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.91 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 98.9 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 98.9 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.89 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.89 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.89 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.88 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.86 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.86 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 98.82 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 98.81 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.81 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.79 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 98.78 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.75 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 98.73 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.71 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.68 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.68 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.67 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.66 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 98.66 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 98.64 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.62 | |
| PF08100 | 51 | Dimerisation: Dimerisation domain; InterPro: IPR01 | 98.6 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 98.6 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.57 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.57 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.56 | |
| PLN02366 | 308 | spermidine synthase | 98.56 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.53 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.51 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.5 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 98.5 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.49 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.49 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.48 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.47 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.46 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.44 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.41 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 98.4 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.39 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.37 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.37 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.35 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.34 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.31 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.29 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.29 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.27 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.27 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.25 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.23 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 98.18 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.18 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.18 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.18 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.17 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.16 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.15 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.08 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.06 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.04 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.01 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.99 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 97.95 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 97.95 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 97.95 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 97.93 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 97.93 | |
| PLN02476 | 278 | O-methyltransferase | 97.93 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 97.92 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.91 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.87 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.87 | |
| PLN02823 | 336 | spermine synthase | 97.87 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 97.86 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 97.84 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 97.84 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 97.82 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 97.81 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 97.79 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 97.77 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.77 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 97.76 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 97.72 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 97.7 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.7 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.64 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.64 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 97.6 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 97.57 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 97.52 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.45 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.43 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 97.37 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 97.36 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.35 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.35 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 97.31 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 97.3 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.29 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 97.26 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 97.24 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 97.24 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 97.23 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.22 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 97.2 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 97.19 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 97.19 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.14 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 97.11 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.1 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 97.05 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.02 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 96.99 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 96.98 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 96.97 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 96.96 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 96.89 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 96.87 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 96.86 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 96.72 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 96.7 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 96.62 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 96.54 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 96.5 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.44 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 96.38 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.36 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 96.27 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 96.26 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.25 | |
| PF09339 | 52 | HTH_IclR: IclR helix-turn-helix domain; InterPro: | 96.25 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.15 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 96.11 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 96.05 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 95.96 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 95.79 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 95.74 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 95.68 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.66 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 95.59 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 95.56 | |
| KOG2918 | 335 | consensus Carboxymethyl transferase [Posttranslati | 95.27 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 95.24 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 95.23 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 95.08 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.04 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 94.98 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 94.7 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 94.67 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 94.53 | |
| TIGR02431 | 248 | pcaR_pcaU beta-ketoadipate pathway transcriptional | 94.51 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 94.49 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 94.46 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.33 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 93.86 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 93.74 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 93.47 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 93.34 | |
| PF03514 | 374 | GRAS: GRAS domain family; InterPro: IPR005202 Sequ | 93.2 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 93.14 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 93.12 | |
| smart00550 | 68 | Zalpha Z-DNA-binding domain in adenosine deaminase | 92.97 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 92.94 | |
| COG1414 | 246 | IclR Transcriptional regulator [Transcription] | 92.86 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 92.83 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 92.77 | |
| PRK11569 | 274 | transcriptional repressor IclR; Provisional | 92.73 | |
| PRK10163 | 271 | DNA-binding transcriptional repressor AllR; Provis | 92.72 | |
| smart00346 | 91 | HTH_ICLR helix_turn_helix isocitrate lyase regulat | 92.55 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 92.11 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 92.07 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 91.72 | |
| smart00419 | 48 | HTH_CRP helix_turn_helix, cAMP Regulatory protein. | 91.68 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 91.67 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 91.64 | |
| PRK09834 | 263 | DNA-binding transcriptional activator MhpR; Provis | 91.61 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 91.33 | |
| PRK15090 | 257 | DNA-binding transcriptional regulator KdgR; Provis | 91.3 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 91.02 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 90.99 | |
| PF02082 | 83 | Rrf2: Transcriptional regulator; InterPro: IPR0009 | 90.95 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 90.91 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 90.76 | |
| PF13463 | 68 | HTH_27: Winged helix DNA-binding domain; PDB: 3GFL | 90.26 | |
| cd00092 | 67 | HTH_CRP helix_turn_helix, cAMP Regulatory protein | 90.1 | |
| PF01978 | 68 | TrmB: Sugar-specific transcriptional regulator Trm | 89.58 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 89.27 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 89.19 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 88.86 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 88.81 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 88.48 | |
| PF09012 | 69 | FeoC: FeoC like transcriptional regulator; InterPr | 88.01 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 87.19 | |
| TIGR02010 | 135 | IscR iron-sulfur cluster assembly transcription fa | 86.28 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 86.05 | |
| PF12802 | 62 | MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP | 86.01 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 85.49 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 84.28 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 84.26 | |
| PRK10857 | 164 | DNA-binding transcriptional regulator IscR; Provis | 84.2 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 84.09 | |
| TIGR00738 | 132 | rrf2_super rrf2 family protein (putative transcrip | 83.71 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 83.3 | |
| COG1959 | 150 | Predicted transcriptional regulator [Transcription | 82.69 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 81.87 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 81.81 | |
| PF12840 | 61 | HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_ | 81.49 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 80.66 | |
| PF07381 | 90 | DUF1495: Winged helix DNA-binding domain (DUF1495) | 80.51 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 80.36 |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=342.02 Aligned_cols=315 Identities=34% Similarity=0.478 Sum_probs=278.2
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYN 94 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~ 94 (345)
+++.+|..+|++++|++|+ +||.| ..+++ ..|||..+.. +.++..|..++|+||.|++.+++++... .|+
T Consensus 12 ~l~~~~~~~~~lk~A~eL~-v~d~l-~~~~~---p~~ia~~l~~--~~~~~~p~ll~r~lr~L~s~~i~k~~~~~~~~Y~ 84 (342)
T KOG3178|consen 12 RLANGFALPMVLKAACELG-VFDIL-ANAGS---PSEIASLLPT--PKNPEAPVLLDRILRLLVSYSILKCRLVGGEVYS 84 (342)
T ss_pred HHHhhhhhHHHHHHHHHcC-hHHHH-HhCCC---HHHHHHhccC--CCCCCChhHHHHHHHHHHHhhhceeeeecceeee
Confidence 5788999999999999999 99999 55432 7788888775 4466789999999999999999988754 599
Q ss_pred cCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 95 LFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 95 ~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
++|+++. +..++..|+..++...+++..++.|..+ +++ |..++|..+++|...++.....|+++|...+...
T Consensus 85 ~~~~~~~~l~~~~~~S~a~~~~~~~~~v~~~~w~~l~dai~eg~~~~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~ 164 (342)
T KOG3178|consen 85 ATPVCKYFLKDSGGGSLAPLVLLNTSKVIMNTWQFLKDAILEGGDAFATAHGMMLGGYGGADERFSKDFNGSMSFLSTLV 164 (342)
T ss_pred ccchhhhheecCCCCchhHHHHHhcccchhhhHHHHHHHHHhcccCCccccchhhhhhcccccccHHHHHHHHHHHHHHH
Confidence 9999998 5444345899999888888899999998 333 6777888899999999988899999999999999
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----CceEEeccCCcCCCCCCEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----CVEHVEGDMFVNVPSGQAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----ri~~~~gd~~~~~p~~D~i~~~~ 242 (345)
.+.+++.+.+|+.....||+|||.|..+..++.+||+++++.+|+|.+++.++ .|+.+.||+|.+.|++|+||++|
T Consensus 165 ~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~P~~daI~mkW 244 (342)
T KOG3178|consen 165 MKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDTPKGDAIWMKW 244 (342)
T ss_pred HHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccCCCcCeEEEEe
Confidence 88999999889999999999999999999999999999999999999999988 48999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC-CCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE-SPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~-~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
|||||+|++|+++|++|+++|+| +|+|+|. |.+.++ ...+.........+|+.|+.++.+|++|+..||+.++.+
T Consensus 245 iLhdwtDedcvkiLknC~~sL~~---~GkIiv~-E~V~p~e~~~dd~~s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~ 320 (342)
T KOG3178|consen 245 ILHDWTDEDCVKILKNCKKSLPP---GGKIIVV-ENVTPEEDKFDDIDSSVTRDMDLLMLTQTSGGKERTLKEFQALLPE 320 (342)
T ss_pred ecccCChHHHHHHHHHHHHhCCC---CCEEEEE-eccCCCCCCccccccceeehhHHHHHHHhccceeccHHHHHhcchh
Confidence 99999999999999999999999 9999999 999986 333222234557789999999867999999999999999
Q ss_pred CCCCceEEEecCCceEEEEEEc
Q 044482 322 AGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 322 aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+||.+.++...+...++|+++|
T Consensus 321 ~gF~~~~~~~~~~~~~~Ie~~k 342 (342)
T KOG3178|consen 321 EGFPVCMVALTAYSYSVIEFHK 342 (342)
T ss_pred hcCceeEEEeccCccchheeCC
Confidence 9999999999998999999886
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-42 Score=308.66 Aligned_cols=226 Identities=28% Similarity=0.359 Sum_probs=194.4
Q ss_pred EeEeeecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHH
Q 044482 89 DVVMYNLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQ 160 (345)
Q Consensus 89 ~~~~y~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 160 (345)
++++|+||++|+. +.++++.+++.++.++..+..+.+|.+| +++ |+..+|.++|+|++++|+..+.|+.+|.
T Consensus 2 ~~~~y~~t~~s~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 81 (241)
T PF00891_consen 2 EGDRYSLTPLSELLLSDHSSPSMRGFVLFMISPELYPAWFRLTEAVRTGKPPFEKAFGTPFFEYLEEDPELAKRFNAAMA 81 (241)
T ss_dssp STEEEEE-HHHHGGSTTTTTTHHHHHHHHHTCHHHHHGGGGHHHHHHHSS-HHHHHHSS-HHHHHHCSHHHHHHHHHHHH
T ss_pred CCCEEeChHHHHHHhCCCCcCcHHHHHHHhcCHHHHHHHHHHHhhhccCCCHHHHhcCCcHHHhhhhChHHHHHHHHHHH
Confidence 3569999999999 5555546788888776667889999998 333 8888898999999999999999999999
Q ss_pred HhhHHHH-HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCC
Q 044482 161 NHTAIVM-KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQ 236 (345)
Q Consensus 161 ~~~~~~~-~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D 236 (345)
..+.... ..+.+.++ |++..+|||||||+|.++.+++++||+++++++|+|+|++.++ ||++++||||+++|.+|
T Consensus 82 ~~~~~~~~~~~~~~~d-~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~P~~D 160 (241)
T PF00891_consen 82 EYSRLNAFDILLEAFD-FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPLPVAD 160 (241)
T ss_dssp HHHHHHHHHHHHHHST-TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCCSSES
T ss_pred hhhhcchhhhhhcccc-ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhhcccc
Confidence 9888777 77888888 9999999999999999999999999999999999999998776 99999999999888899
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCC--cEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH--GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g--G~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
+|++++|||+|+|++|.+||++++++|+| | |+|+|+ |.++++....+........+|+.|++++ +|++||.+|
T Consensus 161 ~~~l~~vLh~~~d~~~~~iL~~~~~al~p---g~~g~llI~-e~~~~~~~~~~~~~~~~~~~dl~ml~~~-~G~~rt~~e 235 (241)
T PF00891_consen 161 VYLLRHVLHDWSDEDCVKILRNAAAALKP---GKDGRLLII-EMVLPDDRTGPPSAEMDALFDLNMLVLT-GGKERTEEE 235 (241)
T ss_dssp EEEEESSGGGS-HHHHHHHHHHHHHHSEE---CTTEEEEEE-EEEECSSSSSHHHHHHHHHHHHHHHHHH-SSS-EEHHH
T ss_pred ceeeehhhhhcchHHHHHHHHHHHHHhCC---CCCCeEEEE-eeccCCCCCCchHHHHHHHHHHHHHHhc-CCCCcCHHH
Confidence 99999999999999999999999999999 8 999999 9999988766543322357899999998 899999999
Q ss_pred HHHHHH
Q 044482 315 FKALAM 320 (345)
Q Consensus 315 ~~~ll~ 320 (345)
|++||+
T Consensus 236 ~~~ll~ 241 (241)
T PF00891_consen 236 WEALLK 241 (241)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 999985
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=298.98 Aligned_cols=282 Identities=13% Similarity=0.162 Sum_probs=206.0
Q ss_pred HHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc-cc
Q 044482 25 QSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE-RT 103 (345)
Q Consensus 25 ~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~-l~ 103 (345)
..++|++|++|| |||+| .+| |.|++|||+++++ +++.++|+||+|+++|+|++++++|+||+.++. +.
T Consensus 3 ~~~~l~aa~~Lg-lfd~L-~~g--p~t~~eLA~~~~~-------~~~~~~~lL~~L~~lgll~~~~~~y~~t~~~~~~l~ 71 (306)
T TIGR02716 3 EFSCMKAAIELD-LFSHM-AEG--PKDLATLAADTGS-------VPPRLEMLLETLRQMRVINLEDGKWSLTEFADYMFS 71 (306)
T ss_pred hHHHHHHHHHcC-cHHHH-hcC--CCCHHHHHHHcCC-------ChHHHHHHHHHHHhCCCeEecCCcEecchhHHhhcc
Confidence 467999999999 99999 553 7899999999999 899999999999999999998889999999988 65
Q ss_pred cchhh---hhhhhhccccchhhhhchHHHHHHHhHhcCcchhh----hhccCchhHHHHHHHHHH-hhHHHHHHHHHhcc
Q 044482 104 MEEFN---ALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMDCI----YLTMLPMMLNLFNQSMQN-HTAIVMKKILEIYK 175 (345)
Q Consensus 104 ~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~----~~~~~~~~~~~f~~~m~~-~~~~~~~~i~~~~~ 175 (345)
++++. ++.+++.+.. ......|..+....+ |.+-|+ +....++. ..|...|.. ......+.+++.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~r---~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~ 146 (306)
T TIGR02716 72 PTPKEPNLHQTPVAKAMA-FLADDFYMGLSQAVR---GQKNFKGQVPYPPVTRED-NLYFEEIHRSNAKFAIQLLLEEAK 146 (306)
T ss_pred CCccchhhhcCchHHHHH-HHHHHHHHhHHHHhc---CCcccccccCCCCCCHHH-HHhHHHHHHhcchhHHHHHHHHcC
Confidence 54432 1223333221 112244666522121 222222 22222222 234455543 33344566778877
Q ss_pred CcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCCCEEEecccc
Q 044482 176 GFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSVL 244 (345)
Q Consensus 176 ~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~vl 244 (345)
+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++ ++|.+|+|++++++
T Consensus 147 -~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~~D~v~~~~~l 225 (306)
T TIGR02716 147 -LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRIL 225 (306)
T ss_pred -CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCCCCCCCEEEeEhhh
Confidence 8888999999999999999999999999999999999987654 79999999997 66667999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-hccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
|+|+++.+.++|++++++|+| ||+++|. |.+.+++..+. ..... ......|+.. -...++.++|.++|+++|
T Consensus 226 h~~~~~~~~~il~~~~~~L~p---gG~l~i~-d~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~e~~~ll~~aG 298 (306)
T TIGR02716 226 YSANEQLSTIMCKKAFDAMRS---GGRLLIL-DMVIDDPENPN-FDYLSHYILGAGMPFS--VLGFKEQARYKEILESLG 298 (306)
T ss_pred hcCChHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCch-hhHHHHHHHHcccccc--cccCCCHHHHHHHHHHcC
Confidence 999999999999999999999 9999999 98877654221 11111 1111111111 112345799999999999
Q ss_pred CCceEEE
Q 044482 324 FGTIKVI 330 (345)
Q Consensus 324 f~~~~~~ 330 (345)
|+.+++.
T Consensus 299 f~~v~~~ 305 (306)
T TIGR02716 299 YKDVTMV 305 (306)
T ss_pred CCeeEec
Confidence 9988753
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-18 Score=149.61 Aligned_cols=164 Identities=22% Similarity=0.259 Sum_probs=123.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D 236 (345)
+.+... ...+.+|||||||||.++..+++..+..+++++|. +.|++.++ .++|+.+|+.+ |+|+. |
T Consensus 43 ~i~~~~-~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD 121 (238)
T COG2226 43 LISLLG-IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFD 121 (238)
T ss_pred HHHhhC-CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccC
Confidence 344433 33578999999999999999999999999999999 89999887 38899999999 99965 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhc----C------
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLF----P------ 305 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~----~------ 305 (345)
+|.+++.||+++|.+ +.|++++|+||| ||++++. |...++.+.... ....+... .+... .
T Consensus 122 ~vt~~fglrnv~d~~--~aL~E~~RVlKp---gG~~~vl-e~~~p~~~~~~~---~~~~~~~~~v~P~~g~~~~~~~~~y 192 (238)
T COG2226 122 AVTISFGLRNVTDID--KALKEMYRVLKP---GGRLLVL-EFSKPDNPVLRK---AYILYYFKYVLPLIGKLVAKDAEAY 192 (238)
T ss_pred EEEeeehhhcCCCHH--HHHHHHHHhhcC---CeEEEEE-EcCCCCchhhHH---HHHHHHHHhHhhhhceeeecChHHH
Confidence 999999999999885 789999999999 9999999 988776543211 11111111 11111 0
Q ss_pred ------CCccCCHHHHHHHHHHCCCCceEEEecCC-ceEEEEEEc
Q 044482 306 ------QAKGRTAGEFKALAMAAGFGTIKVICRSY-CYWVIEFYK 343 (345)
Q Consensus 306 ------~~~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~k 343 (345)
.-...+.+++.++++++||+.++...... ...+..+.|
T Consensus 193 ~yL~eSi~~~p~~~~l~~~~~~~gf~~i~~~~~~~G~~~l~~g~K 237 (238)
T COG2226 193 EYLAESIRRFPDQEELKQMIEKAGFEEVRYENLTFGIVALHRGYK 237 (238)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhcCceEEeeEeeeeeeEEEEEEec
Confidence 11345889999999999999988666653 345555554
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-18 Score=155.65 Aligned_cols=156 Identities=15% Similarity=0.178 Sum_probs=117.1
Q ss_pred ccccceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
.+..+|||||||+|.++..++++ +|+.+++++|+ +.|++.|+ +++++.+|+.+ ++++.|++++..+
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~~ 131 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 131 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeecc
Confidence 35578999999999999999997 47899999999 88887765 57999999987 6666699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-----------------hhhcCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-----------------YDLFPQ 306 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-----------------~~~~~~ 306 (345)
+|++++++...+|++++++|+| ||.+++. |.+.+++..... ....+.+ .....-
T Consensus 132 l~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~-d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 202 (239)
T TIGR00740 132 LQFLPPEDRIALLTKIYEGLNP---NGVLVLS-EKFRFEDTKINH-----LLIDLHHQFKRANGYSELEISQKRTALENV 202 (239)
T ss_pred hhhCCHHHHHHHHHHHHHhcCC---CeEEEEe-ecccCCCHhHHH-----HHHHHHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 9999988889999999999999 9999999 887655432111 0111110 000001
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEE
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFY 342 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~ 342 (345)
-...|.+++++++++|||+.+++........++.++
T Consensus 203 ~~~~s~~~~~~~l~~aGF~~~~~~~~~~~~~~~~~~ 238 (239)
T TIGR00740 203 MRTDSIETHKARLKNVGFSHVELWFQCFNFGSLVAV 238 (239)
T ss_pred CCCCCHHHHHHHHHHcCCchHHHHHHHHhHhHHhee
Confidence 235799999999999999987764444444444443
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.1e-17 Score=146.33 Aligned_cols=157 Identities=21% Similarity=0.168 Sum_probs=115.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-CCCCC--CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP------------CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
..+..+|||||||+|.++..+++++ |+.+++++|+ ++|++.|+ +++++.+|+.+ +++++ |+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4566799999999999999999885 6789999999 88887653 57899999987 77754 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh---hhcCC----------
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY---DLFPQ---------- 306 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~---------- 306 (345)
+..++|++++. .++|++++++||| ||++++. |...++....... ....++..+. .....
T Consensus 151 ~~~~l~~~~d~--~~~l~ei~rvLkp---GG~l~i~-d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 151 MGYGLRNVVDR--LKAMQEMYRVLKP---GSRVSIL-DFNKSTQPFTTSM--QEWMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred EecccccCCCH--HHHHHHHHHHcCc---CcEEEEE-ECCCCCcHHHHHH--HHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 99999999876 4789999999999 9999999 8876543211100 0011111000 00000
Q ss_pred -CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEE
Q 044482 307 -AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEF 341 (345)
Q Consensus 307 -~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~ 341 (345)
....+.+++.++++++||++++.....+. ..+..+
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~~~~~g~~~~~~~ 259 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHYEISGGLMGNLVA 259 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEEEcCCCeeEEEEE
Confidence 23468999999999999999988877644 344444
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.4e-18 Score=152.28 Aligned_cols=165 Identities=19% Similarity=0.235 Sum_probs=82.5
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-- 235 (345)
+++... .....+|||||||+|.++..++++. |+.+++++|+ +.|++.|+ +|+++.+|+.+ |+|++
T Consensus 39 ~~~~~~-~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sf 117 (233)
T PF01209_consen 39 LIKLLG-LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSF 117 (233)
T ss_dssp HHHHHT---S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-E
T ss_pred HHhccC-CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCce
Confidence 344433 4566799999999999999999875 6789999999 89998876 79999999998 88865
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh----hhhhcCC-----
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV----MYDLFPQ----- 306 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~----~~~~~~~----- 306 (345)
|+|++++.||+++|.+ +.|++++|+||| ||+++|+ |...+..+. ....+...+... ......+
T Consensus 118 D~v~~~fglrn~~d~~--~~l~E~~RVLkP---GG~l~il-e~~~p~~~~--~~~~~~~y~~~ilP~~g~l~~~~~~~Y~ 189 (233)
T PF01209_consen 118 DAVTCSFGLRNFPDRE--RALREMYRVLKP---GGRLVIL-EFSKPRNPL--LRALYKFYFKYILPLIGRLLSGDREAYR 189 (233)
T ss_dssp EEEEEES-GGG-SSHH--HHHHHHHHHEEE---EEEEEEE-EEEB-SSHH--HHHHHHH---------------------
T ss_pred eEEEHHhhHHhhCCHH--HHHHHHHHHcCC---CeEEEEe-eccCCCCch--hhceeeeeeccccccccccccccccccc
Confidence 9999999999999874 689999999999 9999999 987765421 100010111100 0001100
Q ss_pred ------CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 307 ------AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 307 ------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
....+.+++.++++++||+.++.++..++ .++..++|
T Consensus 190 yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~~~~~~G~~~i~~g~K 233 (233)
T PF01209_consen 190 YLPESIRRFPSPEELKELLEEAGFKNVEYRPLTFGIVTIHVGTK 233 (233)
T ss_dssp --------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccCC
Confidence 02347889999999999999988777643 45555544
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.4e-18 Score=151.26 Aligned_cols=161 Identities=16% Similarity=0.169 Sum_probs=115.3
Q ss_pred ccccceEEecCCccHHHHHHHH--HCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVN--TYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~--~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
.+..+|||||||+|..+..+++ .+|+.+++++|. |.|++.|+ +++++.+|+.+ +.++.|+|++..+
T Consensus 55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~~~ 134 (247)
T PRK15451 55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 134 (247)
T ss_pred CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehhhH
Confidence 3557899999999999999988 468999999999 89988775 68999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc------hhh------hhhcCC-CccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD------IVM------YDLFPQ-AKGR 310 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d------~~~------~~~~~~-~~~r 310 (345)
+|++++++...++++++++|+| ||.+++. |.+..++...... ......+ ... .....+ -...
T Consensus 135 l~~l~~~~~~~~l~~i~~~Lkp---GG~l~l~-e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~ 209 (247)
T PRK15451 135 LQFLEPSERQALLDKIYQGLNP---GGALVLS-EKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 209 (247)
T ss_pred HHhCCHHHHHHHHHHHHHhcCC---CCEEEEE-EecCCCcchhHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccC
Confidence 9999988888999999999999 9999999 8776554322110 0000000 000 000001 1235
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
|.++..+||++|||+.+...........+.++|
T Consensus 210 ~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 242 (247)
T PRK15451 210 SVETHKARLHKAGFEHSELWFQCFNFGSLVALK 242 (247)
T ss_pred CHHHHHHHHHHcCchhHHHHHHHHhHHHHhhee
Confidence 899999999999999876543333333333333
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=144.35 Aligned_cols=153 Identities=18% Similarity=0.245 Sum_probs=118.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ ..+..+|||||||+|..+..+++.+ +.+++++|+ +.+++.++ +++++.+|+.+ ++|++
T Consensus 41 ~~~~l~~l~-l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~~F 118 (263)
T PTZ00098 41 TTKILSDIE-LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPENTF 118 (263)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCCCe
Confidence 446777776 7778899999999999999998876 679999999 77777655 68999999987 77754
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..+++|++.++..++|++++++|+| ||++++. |........... .... .+... .....+.++|
T Consensus 119 D~V~s~~~l~h~~~~d~~~~l~~i~r~LkP---GG~lvi~-d~~~~~~~~~~~-----~~~~--~~~~~-~~~~~~~~~~ 186 (263)
T PTZ00098 119 DMIYSRDAILHLSYADKKKLFEKCYKWLKP---NGILLIT-DYCADKIENWDE-----EFKA--YIKKR-KYTLIPIQEY 186 (263)
T ss_pred EEEEEhhhHHhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EeccccccCcHH-----HHHH--HHHhc-CCCCCCHHHH
Confidence 999999999999877778999999999999 9999999 886654321110 0000 11111 2234588999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++||++++.....
T Consensus 187 ~~~l~~aGF~~v~~~d~~ 204 (263)
T PTZ00098 187 GDLIKSCNFQNVVAKDIS 204 (263)
T ss_pred HHHHHHCCCCeeeEEeCc
Confidence 999999999999887764
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.8e-16 Score=140.87 Aligned_cols=166 Identities=15% Similarity=0.148 Sum_probs=121.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
..+++.++ .....+|||+|||+|.++..+++.. |+.+++++|+ |.+++.++ +++++.+|+.+ +++++
T Consensus 35 ~~~l~~l~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMN-VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCC
Confidence 34556666 6667899999999999999999986 6789999999 78876654 68899999987 66643
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-------------
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM------------- 300 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~------------- 300 (345)
|+|++..++|++++. .++|+++++.|+| ||++++. +...+.... ........+...+
T Consensus 114 ~fD~V~~~~~l~~~~~~--~~~l~~~~~~Lk~---gG~l~~~-~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~~~~~~ 185 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPDY--MQVLREMYRVVKP---GGKVVCL-ETSQPTIPG--FKQLYFFYFKYIMPLFGKLFAKSYKE 185 (231)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHHcCc---CeEEEEE-ECCCCCChH--HHHHHHHHHcChhHHhhHHhcCCHHH
Confidence 999999999998876 4789999999999 9999999 765433210 0000000000000
Q ss_pred ---hhhcCCCccCCHHHHHHHHHHCCCCceEEEecC-CceEEEEEEc
Q 044482 301 ---YDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS-YCYWVIEFYK 343 (345)
Q Consensus 301 ---~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 343 (345)
+.-. .....+.++++++|+++||+++++.... +..+++.++|
T Consensus 186 ~~~~~~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~~g~~~~~~~~~ 231 (231)
T TIGR02752 186 YSWLQES-TRDFPGMDELAEMFQEAGFKDVEVKSYTGGVAAMHMGFK 231 (231)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHcCCCeeEEEEcccceEEEEEEEC
Confidence 0000 1123578999999999999999998887 5677888876
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.9e-16 Score=140.84 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=111.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCC-C-CEEEec
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPS-G-QAIFTK 241 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~-~-D~i~~~ 241 (345)
...+++.++ .....+|||||||+|.++..+++++|+.+++++|+ |.+++.++ +++++.+|+.+..+. . |+|+++
T Consensus 18 ~~~ll~~l~-~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~fD~v~~~ 96 (255)
T PRK14103 18 FYDLLARVG-AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARERGVDARTGDVRDWKPKPDTDVVVSN 96 (255)
T ss_pred HHHHHHhCC-CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhcCCcEEEcChhhCCCCCCceEEEEe
Confidence 346777777 66778999999999999999999999999999999 88998887 799999998763333 3 999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh----hhhcCCCccCCHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM----YDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~rt~~e~~~ 317 (345)
.++|++++. .++|++++++|+| ||++++. .....+.+...........-.+.. .....+....+.+++.+
T Consensus 97 ~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 170 (255)
T PRK14103 97 AALQWVPEH--ADLLVRWVDELAP---GSWIAVQ-VPGNFDAPSHAAVRALARREPWAKLLRDIPFRVGAVVQTPAGYAE 170 (255)
T ss_pred hhhhhCCCH--HHHHHHHHHhCCC---CcEEEEE-cCCCcCChhHHHHHHHhccCchhHHhcccccccCcCCCCHHHHHH
Confidence 999999876 5789999999999 9999887 432111100000000000000000 00110223468999999
Q ss_pred HHHHCCCCceEE
Q 044482 318 LAMAAGFGTIKV 329 (345)
Q Consensus 318 ll~~aGf~~~~~ 329 (345)
+|+++||++...
T Consensus 171 ~l~~aGf~v~~~ 182 (255)
T PRK14103 171 LLTDAGCKVDAW 182 (255)
T ss_pred HHHhCCCeEEEE
Confidence 999999985433
|
|
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.6e-16 Score=143.69 Aligned_cols=148 Identities=18% Similarity=0.164 Sum_probs=108.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCc
Confidence 456789999999999999999988 679999999 77776543 68999999988 77754 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCC--chhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEF--SSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~--~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+||++|. .++|++++++|+| ||+++|. +......... .........++....... -....+.++|.+++++
T Consensus 196 ~~h~~d~--~~~l~e~~rvLkp---GG~lvi~-~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~-~p~~~s~~~~~~~l~~ 268 (340)
T PLN02244 196 GEHMPDK--RKFVQELARVAAP---GGRIIIV-TWCHRDLEPGETSLKPDEQKLLDKICAAYY-LPAWCSTSDYVKLAES 268 (340)
T ss_pred hhccCCH--HHHHHHHHHHcCC---CcEEEEE-EecccccccccccCCHHHHHHHHHHHhhcc-CCCCCCHHHHHHHHHH
Confidence 9999886 4889999999999 9999998 7654322111 000000111111111111 1123579999999999
Q ss_pred CCCCceEEEecC
Q 044482 322 AGFGTIKVICRS 333 (345)
Q Consensus 322 aGf~~~~~~~~~ 333 (345)
+||+++++....
T Consensus 269 aGf~~v~~~d~s 280 (340)
T PLN02244 269 LGLQDIKTEDWS 280 (340)
T ss_pred CCCCeeEeeeCc
Confidence 999999887653
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.1e-16 Score=142.23 Aligned_cols=144 Identities=22% Similarity=0.217 Sum_probs=111.1
Q ss_pred HHHhccCcc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEE
Q 044482 170 ILEIYKGFK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAI 238 (345)
Q Consensus 170 i~~~~~~~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i 238 (345)
+++... +. ...+|||||||+|.++..+++.+|..+++++|. +++++.++ +++++.+|+.+ +++.+ |+|
T Consensus 104 ~l~~~~-l~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~sFDvV 182 (340)
T PLN02490 104 ALEPAD-LSDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTDYADRY 182 (340)
T ss_pred HHhhcc-cCCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCCceeEE
Confidence 344444 43 356899999999999999999998889999999 78877665 68899999987 66643 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++..++|+|++.+ ++|+++++.|+| ||++++. +.+.++.. .. ....+..+ ...+.+|+.++
T Consensus 183 Is~~~L~~~~d~~--~~L~e~~rvLkP---GG~LvIi-~~~~p~~~----~~--r~~~~~~~-------~~~t~eEl~~l 243 (340)
T PLN02490 183 VSAGSIEYWPDPQ--RGIKEAYRVLKI---GGKACLI-GPVHPTFW----LS--RFFADVWM-------LFPKEEEYIEW 243 (340)
T ss_pred EEcChhhhCCCHH--HHHHHHHHhcCC---CcEEEEE-EecCcchh----HH--HHhhhhhc-------cCCCHHHHHHH
Confidence 9999999999875 689999999999 9999998 65543210 00 01112111 12578999999
Q ss_pred HHHCCCCceEEEecC
Q 044482 319 AMAAGFGTIKVICRS 333 (345)
Q Consensus 319 l~~aGf~~~~~~~~~ 333 (345)
|+++||+.+++....
T Consensus 244 L~~aGF~~V~i~~i~ 258 (340)
T PLN02490 244 FTKAGFKDVKLKRIG 258 (340)
T ss_pred HHHCCCeEEEEEEcC
Confidence 999999999987764
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=3.1e-15 Score=129.23 Aligned_cols=165 Identities=20% Similarity=0.188 Sum_probs=119.9
Q ss_pred HHHHHHHHHhhHHHHHH-HHHhccCcccccceEEecCCccHHHHHHHHHCCC------CeEEEeeh-hhHhhhCC-----
Q 044482 153 NLFNQSMQNHTAIVMKK-ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ------ITGINFDL-PYVIKNAP----- 219 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~-i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~------~~~~~~Dl-p~~i~~a~----- 219 (345)
+..+.+|........+. .+..+. -...-++||++||+|..+..++++-+. .+++++|+ |+|+..++
T Consensus 74 D~mND~mSlGiHRlWKd~~v~~L~-p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~ 152 (296)
T KOG1540|consen 74 DIMNDAMSLGIHRLWKDMFVSKLG-PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKK 152 (296)
T ss_pred HHHHHHhhcchhHHHHHHhhhccC-CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhh
Confidence 34555665443322232 344444 334578999999999999999999877 78999999 99988665
Q ss_pred -------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh
Q 044482 220 -------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI 289 (345)
Q Consensus 220 -------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~ 289 (345)
++.++.+|..+ |+|+. |.|.+..-+.+|++.+ +.|++++|+||| ||++.+. |+-.-++. ..
T Consensus 153 ~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~th~~--k~l~EAYRVLKp---GGrf~cL-eFskv~~~---~l 223 (296)
T KOG1540|consen 153 RPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNVTHIQ--KALREAYRVLKP---GGRFSCL-EFSKVENE---PL 223 (296)
T ss_pred cCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecCCCHH--HHHHHHHHhcCC---CcEEEEE-EccccccH---HH
Confidence 58999999998 99864 9999999999999985 889999999999 9999999 87543321 12
Q ss_pred hhhh--hccchh---------------hhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 290 NRNI--LTLDIV---------------MYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 290 ~~~~--~~~d~~---------------~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
.++. +.+|.. .|+.. =.+..+.+++..++++|||..+.
T Consensus 224 ~~fy~~ysf~VlpvlG~~iagd~~sYqYLveS-I~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 224 KWFYDQYSFDVLPVLGEIIAGDRKSYQYLVES-IRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHhhhhhhhchhhHhhhhhHhhhhhHHhh-hhcCCCHHHHHHHHHHcCCcccc
Confidence 2221 222221 01110 01345889999999999999886
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.2e-15 Score=130.90 Aligned_cols=166 Identities=20% Similarity=0.197 Sum_probs=120.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~ 235 (345)
.++..+. .....+|||||||+|.++..+++.+| ..+++++|+ +.+++.++ +++++.+|+.+ +.+.+
T Consensus 42 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 120 (239)
T PRK00216 42 KTIKWLG-VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDN 120 (239)
T ss_pred HHHHHhC-CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCC
Confidence 4455555 44557999999999999999999998 689999999 66666544 57889999987 44433
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh----hhcCC---
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY----DLFPQ--- 306 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~----~~~~~--- 306 (345)
|+|++.+++|++++. ..+|+++.+.|+| ||++++. +...+..... ..........++ ....+
T Consensus 121 ~~D~I~~~~~l~~~~~~--~~~l~~~~~~L~~---gG~li~~-~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 191 (239)
T PRK00216 121 SFDAVTIAFGLRNVPDI--DKALREMYRVLKP---GGRLVIL-EFSKPTNPPL---KKAYDFYLFKVLPLIGKLISKNAE 191 (239)
T ss_pred CccEEEEecccccCCCH--HHHHHHHHHhccC---CcEEEEE-EecCCCchHH---HHHHHHHHHhhhHHHHHHHcCCcH
Confidence 999999999999876 4789999999999 9999999 7765433210 000000000000 00001
Q ss_pred ---------CccCCHHHHHHHHHHCCCCceEEEecC-CceEEEEEEcC
Q 044482 307 ---------AKGRTAGEFKALAMAAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 307 ---------~~~rt~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
...++.++|.++|+++||+++++.... +...++.++||
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~ 239 (239)
T PRK00216 192 AYSYLAESIRAFPDQEELAAMLEEAGFERVRYRNLTGGIVALHVGYKP 239 (239)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeeeeecCcEEEEEEecC
Confidence 123578999999999999999998865 56789999886
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.7e-15 Score=144.97 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=115.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-- 235 (345)
..+++.+. .....+|||||||+|..+..+++.+ +.+++++|+ +.+++.|+ +++|+.+|+++ ++|++
T Consensus 256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~~~f 333 (475)
T PLN02336 256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPDNSF 333 (475)
T ss_pred HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCCCCE
Confidence 34566665 6667799999999999999998876 779999999 77777654 68999999988 66654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..+++|+++. .++|++++++|+| ||++++. +........... ... .+... +...++.+++
T Consensus 334 D~I~s~~~l~h~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~~~~~~---~~~-----~~~~~-g~~~~~~~~~ 398 (475)
T PLN02336 334 DVIYSRDTILHIQDK--PALFRSFFKWLKP---GGKVLIS-DYCRSPGTPSPE---FAE-----YIKQR-GYDLHDVQAY 398 (475)
T ss_pred EEEEECCcccccCCH--HHHHHHHHHHcCC---CeEEEEE-EeccCCCCCcHH---HHH-----HHHhc-CCCCCCHHHH
Confidence 999999999999886 4789999999999 9999999 877654322111 111 11122 4557789999
Q ss_pred HHHHHHCCCCceEEEec
Q 044482 316 KALAMAAGFGTIKVICR 332 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~ 332 (345)
.++++++||+++++...
T Consensus 399 ~~~l~~aGF~~i~~~d~ 415 (475)
T PLN02336 399 GQMLKDAGFDDVIAEDR 415 (475)
T ss_pred HHHHHHCCCeeeeeecc
Confidence 99999999999877654
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.4e-15 Score=146.52 Aligned_cols=140 Identities=17% Similarity=0.206 Sum_probs=110.7
Q ss_pred cchhhhhccCchhHHHHHHHHHHhhHH--HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHh
Q 044482 139 IMDCIYLTMLPMMLNLFNQSMQNHTAI--VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVI 215 (345)
Q Consensus 139 ~~~~~~~~~~~~~~~~f~~~m~~~~~~--~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i 215 (345)
..+|+++..+++..++|...|...... ........++ +....+|||||||+|.++..+++++|+.+++++|+ +.|+
T Consensus 377 ~~~fd~fg~r~D~~dRf~~~~~yle~m~~~~~~k~~i~d-~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~ML 455 (677)
T PRK06922 377 VLLFDFFGLRKDAYDRFHNEEVYLEHMNSSADDKRIILD-YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVI 455 (677)
T ss_pred hHHHHHhccChhhHhHHHhHHHHHHhccccHHHHHHHhh-hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHH
Confidence 467888888888888888777654321 1112233444 66778999999999999999999999999999999 7778
Q ss_pred hhCC--------CceEEeccCCc-C--CCCC--CEEEeccccccC-----------ChhHHHHHHHHHHhhCCCCCCCcE
Q 044482 216 KNAP--------CVEHVEGDMFV-N--VPSG--QAIFTKSVLLNW-----------SDEQCLKILKNCYDALPKSRKHGR 271 (345)
Q Consensus 216 ~~a~--------ri~~~~gd~~~-~--~p~~--D~i~~~~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~ 271 (345)
+.++ +++++.+|+.+ + ++++ |+|+++.++|+| ++++..++|++++++||| ||+
T Consensus 456 e~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKP---GGr 532 (677)
T PRK06922 456 DTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKP---GGR 532 (677)
T ss_pred HHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCC---CcE
Confidence 7665 46788899876 3 4443 999999999986 356778999999999999 999
Q ss_pred EEEEeccCCCCC
Q 044482 272 TQLRSKRGLPES 283 (345)
Q Consensus 272 lli~~d~~~~~~ 283 (345)
++|. |.+.+++
T Consensus 533 LII~-D~v~~E~ 543 (677)
T PRK06922 533 IIIR-DGIMTED 543 (677)
T ss_pred EEEE-eCccCCc
Confidence 9999 8876654
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=136.79 Aligned_cols=150 Identities=14% Similarity=0.124 Sum_probs=107.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------C-CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------P-CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------~-ri~~~~gd~~~-~~p~~- 235 (345)
.++..++.. ...+|||||||+|.++..+++..+. +++++|. +.++.++ . ++.++.+|+.+ +.+..
T Consensus 113 ~l~~~l~~l-~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~F 190 (322)
T PRK15068 113 RVLPHLSPL-KGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAF 190 (322)
T ss_pred HHHHhhCCC-CCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCc
Confidence 344555423 3479999999999999999998776 5999998 4444321 1 68999999876 55444
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC-CccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ-AKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~rt~~e 314 (345)
|+|++..++||..+. ..+|+++++.|+| ||++++. +.+.+........... .... + .+ -..+|.++
T Consensus 191 D~V~s~~vl~H~~dp--~~~L~~l~~~Lkp---GG~lvl~-~~~i~~~~~~~l~p~~-~y~~-----~-~~~~~lps~~~ 257 (322)
T PRK15068 191 DTVFSMGVLYHRRSP--LDHLKQLKDQLVP---GGELVLE-TLVIDGDENTVLVPGD-RYAK-----M-RNVYFIPSVPA 257 (322)
T ss_pred CEEEECChhhccCCH--HHHHHHHHHhcCC---CcEEEEE-EEEecCCCccccCchh-HHhc-----C-ccceeCCCHHH
Confidence 999999999999876 4789999999999 9999887 6665543321110000 0000 0 01 12358999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++|+++||+++++....
T Consensus 258 l~~~L~~aGF~~i~~~~~~ 276 (322)
T PRK15068 258 LKNWLERAGFKDVRIVDVS 276 (322)
T ss_pred HHHHHHHcCCceEEEEeCC
Confidence 9999999999999887653
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-14 Score=126.51 Aligned_cols=162 Identities=17% Similarity=0.150 Sum_probs=118.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D 236 (345)
.+++.+. .....+|||+|||+|.++..+++.+|. .+++++|+ +.+++.++ +++++.+|+.+ +.+.+ |
T Consensus 30 ~~~~~~~-~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D 108 (223)
T TIGR01934 30 RAVKLIG-VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDNSFD 108 (223)
T ss_pred HHHHHhc-cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCCcEE
Confidence 4455544 445679999999999999999999987 78999999 67766544 58899999987 55543 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh---hhhcC-------C
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM---YDLFP-------Q 306 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~---~~~~~-------~ 306 (345)
+|++..++|+.++. ..+|+++++.|+| ||++++. +...+... +. ....+..+ +.... +
T Consensus 109 ~i~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 176 (223)
T TIGR01934 109 AVTIAFGLRNVTDI--QKALREMYRVLKP---GGRLVIL-EFSKPANA--LL----KKFYKFYLKNVLPSIGGLISKNAE 176 (223)
T ss_pred EEEEeeeeCCcccH--HHHHHHHHHHcCC---CcEEEEE-EecCCCch--hh----HHHHHHHHHHhhhhhhhhhcCCch
Confidence 99999999998875 5789999999999 9999999 76544321 10 01111111 10000 0
Q ss_pred ---------CccCCHHHHHHHHHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 307 ---------AKGRTAGEFKALAMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 307 ---------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
....+.++|+++|+++||+++++.+..+. ..+++++|
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~ 223 (223)
T TIGR01934 177 AYTYLPESIRAFPSQEELAAMLKEAGFEEVRYRSLTFGVAAIHVGKK 223 (223)
T ss_pred hhHHHHHHHHhCCCHHHHHHHHHHcCCccceeeeeecceeeEEEecC
Confidence 11347889999999999999999888765 45666654
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=134.23 Aligned_cols=149 Identities=13% Similarity=0.064 Sum_probs=105.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.++..++ .....+|||||||+|.++..++...+. .++++|. +.++.+++ ++.+..+|+.+ +....
T Consensus 112 ~~l~~l~-~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~F 189 (314)
T TIGR00452 112 RVLPHLS-PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAF 189 (314)
T ss_pred HHHHhcC-CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCc
Confidence 4556555 344579999999999999999988765 7899998 55554321 67788888765 33334
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch--hhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS--INRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++..+|||+++. ...|++++++|+| ||++++. +.+.+....... ...+..... .-...+.+
T Consensus 190 D~V~s~gvL~H~~dp--~~~L~el~r~Lkp---GG~Lvle-tl~i~g~~~~~l~p~~ry~k~~n--------v~flpS~~ 255 (314)
T TIGR00452 190 DTVFSMGVLYHRKSP--LEHLKQLKHQLVI---KGELVLE-TLVIDGDLNTVLVPKDRYAKMKN--------VYFIPSVS 255 (314)
T ss_pred CEEEEcchhhccCCH--HHHHHHHHHhcCC---CCEEEEE-EEEecCccccccCchHHHHhccc--------cccCCCHH
Confidence 999999999999877 4789999999999 9999998 765543321100 000000000 01235789
Q ss_pred HHHHHHHHCCCCceEEEecC
Q 044482 314 EFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~ 333 (345)
++.++|+++||+.+++....
T Consensus 256 ~L~~~L~~aGF~~V~i~~~~ 275 (314)
T TIGR00452 256 ALKNWLEKVGFENFRILDVL 275 (314)
T ss_pred HHHHHHHHCCCeEEEEEecc
Confidence 99999999999999887653
|
Known examples to date are restricted to the proteobacteria. |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=131.12 Aligned_cols=142 Identities=22% Similarity=0.263 Sum_probs=108.9
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~ 242 (345)
.....+|||||||+|..+..+++.. +..+++++|. +.+++.++ +++++.+|+.+ +++++ |+|++..
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 4567899999999999988877764 6678999999 88887765 68899999877 66653 9999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA 322 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a 322 (345)
++|++++. .++|+++++.|+| ||++++. +.+...... . . ...++.++..+ .+...+..+|.++|+++
T Consensus 155 v~~~~~d~--~~~l~~~~r~Lkp---GG~l~i~-~~~~~~~~~--~--~--~~~~~~~~~~~-~~~~~~~~e~~~~l~~a 221 (272)
T PRK11873 155 VINLSPDK--ERVFKEAFRVLKP---GGRFAIS-DVVLRGELP--E--E--IRNDAELYAGC-VAGALQEEEYLAMLAEA 221 (272)
T ss_pred cccCCCCH--HHHHHHHHHHcCC---CcEEEEE-EeeccCCCC--H--H--HHHhHHHHhcc-ccCCCCHHHHHHHHHHC
Confidence 99998876 4789999999999 9999999 876543211 1 0 11122232222 34567899999999999
Q ss_pred CCCceEEEe
Q 044482 323 GFGTIKVIC 331 (345)
Q Consensus 323 Gf~~~~~~~ 331 (345)
||..+++..
T Consensus 222 Gf~~v~i~~ 230 (272)
T PRK11873 222 GFVDITIQP 230 (272)
T ss_pred CCCceEEEe
Confidence 999987744
|
|
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=127.18 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=104.6
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
++|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++..++||+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 3799999999999999999999999999999 66766554 57999999876 45544 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++. ..+|+++++.|+| ||++++. +.+.+..... .. + .. .....+..+|.++++++||+++
T Consensus 81 ~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~-~~-------~-----~~-~~~~~s~~~~~~~l~~~Gf~~~ 140 (224)
T smart00828 81 KDK--MDLFSNISRHLKD---GGHLVLA-DFIANLLSAI-EH-------E-----ET-TSYLVTREEWAELLARNNLRVV 140 (224)
T ss_pred CCH--HHHHHHHHHHcCC---CCEEEEE-EcccccCccc-cc-------c-----cc-ccccCCHHHHHHHHHHCCCeEE
Confidence 875 5899999999999 9999999 8753321100 00 0 00 1123578999999999999999
Q ss_pred EEEecC
Q 044482 328 KVICRS 333 (345)
Q Consensus 328 ~~~~~~ 333 (345)
+.....
T Consensus 141 ~~~~~~ 146 (224)
T smart00828 141 EGVDAS 146 (224)
T ss_pred EeEECc
Confidence 887764
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.5e-14 Score=122.36 Aligned_cols=137 Identities=15% Similarity=0.136 Sum_probs=104.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~- 235 (345)
+.+++.++ .....+|||+|||+|..+..++++ ..+++++|+ +.+++.++ ++++...|+.+ +++..
T Consensus 20 ~~l~~~l~-~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f 96 (197)
T PRK11207 20 SEVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY 96 (197)
T ss_pred HHHHHhcc-cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence 35566666 455689999999999999999986 458999999 77777655 47888899877 45544
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..++|++++++...++++++++|+| ||+++++ +.+..++...+. . -....+.+|+
T Consensus 97 D~I~~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~~~~~-~~~~~~~~~~~~--------~--------~~~~~~~~el 156 (197)
T PRK11207 97 DFILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIV-AAMDTADYPCTV--------G--------FPFAFKEGEL 156 (197)
T ss_pred CEEEEecchhhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEecCCCCCCCC--------C--------CCCccCHHHH
Confidence 999999999999988889999999999999 9998777 554332211000 0 0122578899
Q ss_pred HHHHHHCCCCceEE
Q 044482 316 KALAMAAGFGTIKV 329 (345)
Q Consensus 316 ~~ll~~aGf~~~~~ 329 (345)
.++++ ||++++.
T Consensus 157 ~~~~~--~~~~~~~ 168 (197)
T PRK11207 157 RRYYE--GWEMVKY 168 (197)
T ss_pred HHHhC--CCeEEEe
Confidence 99887 8988765
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-14 Score=134.49 Aligned_cols=140 Identities=14% Similarity=0.034 Sum_probs=101.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC--CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~vl 244 (345)
...+|||||||+|.++..+++ ++.+++++|. +++++.|+ +++++.+|+.+ +.+.+ |+|++..+|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence 346899999999999998886 4678999999 78887665 57889999866 44433 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chhhhhhcC-C----CccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIVMYDLFP-Q----AKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~~~~~~~-~----~~~rt~~e~~~l 318 (345)
||++|.. .+|+++++.|+| ||.++|. +...... ....... ....+...+ + .+.++.+|+.++
T Consensus 209 eHv~d~~--~~L~~l~r~LkP---GG~liis-t~nr~~~------~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~l 276 (322)
T PLN02396 209 EHVANPA--EFCKSLSALTIP---NGATVLS-TINRTMR------AYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMI 276 (322)
T ss_pred HhcCCHH--HHHHHHHHHcCC---CcEEEEE-ECCcCHH------HHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHH
Confidence 9999884 799999999999 9999988 5421100 0000000 000111111 2 235789999999
Q ss_pred HHHCCCCceEEEec
Q 044482 319 AMAAGFGTIKVICR 332 (345)
Q Consensus 319 l~~aGf~~~~~~~~ 332 (345)
|+++||+++++..+
T Consensus 277 L~~aGf~i~~~~G~ 290 (322)
T PLN02396 277 LQRASVDVKEMAGF 290 (322)
T ss_pred HHHcCCeEEEEeee
Confidence 99999999888544
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-14 Score=121.41 Aligned_cols=176 Identities=16% Similarity=0.209 Sum_probs=130.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccC
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDM 228 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~ 228 (345)
.|.++-...+++ +.+++..++ .....+|+|+|||+|..+..|++++|+..++++|. |+|++.|+ +++|..+|.
T Consensus 7 ~Yl~F~~eRtRP-a~dLla~Vp-~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl 84 (257)
T COG4106 7 QYLQFEDERTRP-ARDLLARVP-LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADL 84 (257)
T ss_pred HHHHHHHhccCc-HHHHHhhCC-ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccH
Confidence 344443444444 457888888 88889999999999999999999999999999998 99999887 899999999
Q ss_pred CcCCC--CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-----hh
Q 044482 229 FVNVP--SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-----MY 301 (345)
Q Consensus 229 ~~~~p--~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-----~~ 301 (345)
-+-.| +.|+++.+.+||.++|. .++|.+....|.| ||.|-+. +|++-..+.. ..+.+.. -.
T Consensus 85 ~~w~p~~~~dllfaNAvlqWlpdH--~~ll~rL~~~L~P---gg~LAVQ----mPdN~depsH---~~mr~~A~~~p~~~ 152 (257)
T COG4106 85 RTWKPEQPTDLLFANAVLQWLPDH--PELLPRLVSQLAP---GGVLAVQ----MPDNLDEPSH---RLMRETADEAPFAQ 152 (257)
T ss_pred hhcCCCCccchhhhhhhhhhcccc--HHHHHHHHHhhCC---CceEEEE----CCCccCchhH---HHHHHHHhcCchhh
Confidence 88556 34999999999988877 5899999999999 9988887 5665444321 1111111 01
Q ss_pred hhcC----CCccCCHHHHHHHHHHCCCCceEEE------ecCCceEEEEEEcC
Q 044482 302 DLFP----QAKGRTAGEFKALAMAAGFGTIKVI------CRSYCYWVIEFYKP 344 (345)
Q Consensus 302 ~~~~----~~~~rt~~e~~~ll~~aGf~~~~~~------~~~~~~~vi~~~k~ 344 (345)
.+.. .....+...|-++|...+-+ +.|. ++++...|++++|-
T Consensus 153 ~l~~~~~~r~~v~s~a~Yy~lLa~~~~r-vDiW~T~Y~h~l~~a~aIvdWvkg 204 (257)
T COG4106 153 ELGGRGLTRAPLPSPAAYYELLAPLACR-VDIWHTTYYHQLPGADAIVDWVKG 204 (257)
T ss_pred hhCccccccCCCCCHHHHHHHhCcccce-eeeeeeeccccCCCccchhhheec
Confidence 1110 22345889999999988744 3443 33466788888863
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.7e-14 Score=123.47 Aligned_cols=154 Identities=19% Similarity=0.175 Sum_probs=110.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-- 235 (345)
.+++.++ .....+|||+|||+|.++..+++.+ |..+++++|+ +.+++.++ ++++..+|+.+ +++.+
T Consensus 10 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 88 (241)
T PRK08317 10 RTFELLA-VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLPFPDGSF 88 (241)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCCCCCCCc
Confidence 3455566 6677899999999999999999998 7889999999 66665543 68899999876 66543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC-CchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE-FSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~-~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++.+++|++++. ..+++++++.|+| ||++++. +........ +........... .+... .....+..+
T Consensus 89 D~v~~~~~~~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~ 159 (241)
T PRK08317 89 DAVRSDRVLQHLEDP--ARALAEIARVLRP---GGRVVVL-DTDWDTLVWHSGDRALMRKILN--FWSDH-FADPWLGRR 159 (241)
T ss_pred eEEEEechhhccCCH--HHHHHHHHHHhcC---CcEEEEE-ecCCCceeecCCChHHHHHHHH--HHHhc-CCCCcHHHH
Confidence 999999999999886 4789999999999 9999998 753221110 000000111111 11111 233456678
Q ss_pred HHHHHHHCCCCceEEEec
Q 044482 315 FKALAMAAGFGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~ 332 (345)
|.++++++||+++++...
T Consensus 160 ~~~~l~~aGf~~~~~~~~ 177 (241)
T PRK08317 160 LPGLFREAGLTDIEVEPY 177 (241)
T ss_pred HHHHHHHcCCCceeEEEE
Confidence 999999999998876543
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.9e-15 Score=114.52 Aligned_cols=93 Identities=16% Similarity=0.257 Sum_probs=79.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccC-Cc-CCCCC-CEEEecc-cc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDM-FV-NVPSG-QAIFTKS-VL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~-~~-~~p~~-D~i~~~~-vl 244 (345)
..+|||||||+|.++..+++++|+.+++++|. |++++.++ |++++.+|+ .. ..+.. |+|++.. .+
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~~ 81 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFTL 81 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGSG
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCcc
Confidence 46899999999999999999999999999999 88877655 899999999 33 33344 9999999 66
Q ss_pred ccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSD-EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++.+ ++..++|+++++.|+| ||+++|.
T Consensus 82 ~~~~~~~~~~~~l~~~~~~L~p---gG~lvi~ 110 (112)
T PF12847_consen 82 HFLLPLDERRRVLERIRRLLKP---GGRLVIN 110 (112)
T ss_dssp GGCCHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccchhHHHHHHHHHHHhcCC---CcEEEEE
Confidence 65543 6778999999999999 9999987
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-14 Score=128.77 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=105.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc--CCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV--NVPS- 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~--~~p~- 234 (345)
.+++.++ ....+|||||||+|.++..+++. ..+++++|+ +++++.|+ +++++.+|+.+ +.+.
T Consensus 36 ~~l~~l~--~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~ 111 (255)
T PRK11036 36 RLLAELP--PRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLET 111 (255)
T ss_pred HHHHhcC--CCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCC
Confidence 4555544 34579999999999999999987 458999999 88888765 57899999876 3443
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch---hh-----hhhcC
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI---VM-----YDLFP 305 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~---~~-----~~~~~ 305 (345)
. |+|++..+||++++.. .+|+++++.|+| ||+++|. ........ ........++. .+ ....
T Consensus 112 ~fD~V~~~~vl~~~~~~~--~~l~~~~~~Lkp---gG~l~i~-~~n~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~- 181 (255)
T PRK11036 112 PVDLILFHAVLEWVADPK--SVLQTLWSVLRP---GGALSLM-FYNANGLL---MHNMVAGNFDYVQAGMPKRKKRTLS- 181 (255)
T ss_pred CCCEEEehhHHHhhCCHH--HHHHHHHHHcCC---CeEEEEE-EECccHHH---HHHHHccChHHHHhcCccccccCCC-
Confidence 3 9999999999998774 789999999999 9999887 43221100 00000000000 00 0000
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
-....+.+++.++|+++||+++++.-+..
T Consensus 182 p~~~~~~~~l~~~l~~aGf~~~~~~gi~~ 210 (255)
T PRK11036 182 PDYPLDPEQVYQWLEEAGWQIMGKTGVRV 210 (255)
T ss_pred CCCCCCHHHHHHHHHHCCCeEeeeeeEEE
Confidence 12246789999999999999987765543
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.7e-13 Score=123.83 Aligned_cols=150 Identities=17% Similarity=0.153 Sum_probs=107.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCC-CC-CEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVP-SG-QAIF 239 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p-~~-D~i~ 239 (345)
...+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ +.+++.++ +++++.+|+.+..+ .. |+|+
T Consensus 20 ~~~ll~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~ 98 (258)
T PRK01683 20 ARDLLARVP-LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQALDLIF 98 (258)
T ss_pred HHHHHhhCC-CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCCccEEE
Confidence 456777777 77778999999999999999999999999999999 88888776 78899999876333 33 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh--h-ccchhhhhhcCC---CccCCHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI--L-TLDIVMYDLFPQ---AKGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~--~-~~d~~~~~~~~~---~~~rt~~ 313 (345)
++.++|+.+|. .++|++++++|+| ||++++. - ++....+...... . ...+.......+ ....+.+
T Consensus 99 ~~~~l~~~~d~--~~~l~~~~~~Lkp---gG~~~~~-~---~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 169 (258)
T PRK01683 99 ANASLQWLPDH--LELFPRLVSLLAP---GGVLAVQ-M---PDNLDEPSHVLMREVAENGPWEQNLPDRGARRAPLPPPH 169 (258)
T ss_pred EccChhhCCCH--HHHHHHHHHhcCC---CcEEEEE-C---CCCCCCHHHHHHHHHHccCchHHHhccccccCcCCCCHH
Confidence 99999988876 4799999999999 9998886 2 2211111100000 0 000000000001 2345778
Q ss_pred HHHHHHHHCCCCc
Q 044482 314 EFKALAMAAGFGT 326 (345)
Q Consensus 314 e~~~ll~~aGf~~ 326 (345)
++.+++.++|+.+
T Consensus 170 ~~~~~l~~~g~~v 182 (258)
T PRK01683 170 AYYDALAPAACRV 182 (258)
T ss_pred HHHHHHHhCCCce
Confidence 9999999999864
|
|
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.2e-15 Score=122.45 Aligned_cols=135 Identities=20% Similarity=0.235 Sum_probs=97.4
Q ss_pred cccceEEecCCccHHHHHHH-HHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIV-NTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~~v 243 (345)
+..+|||+|||+|.++..++ +.+|..+++++|+ +.+++.|+ +++|+.+|+.+ + ++.. |+|++..+
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~ 82 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV 82 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence 45789999999999999999 5688999999999 88888776 69999999999 4 3334 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
+|++++.. .+|+++.+.|++ +|.+++. +....+........... +-...+.....+. ..++|..+|++||
T Consensus 83 l~~~~~~~--~~l~~~~~~lk~---~G~~i~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~ag 152 (152)
T PF13847_consen 83 LHHFPDPE--KVLKNIIRLLKP---GGILIIS-DPNHNDELPEQLEELMN--LYSEVWSMIYIGN--DKEEWKYILEEAG 152 (152)
T ss_dssp GGGTSHHH--HHHHHHHHHEEE---EEEEEEE-EEEHSHHHHHHHHHHHH--HHHHHHHHCC-----CCCGHHHHHHHTT
T ss_pred hhhccCHH--HHHHHHHHHcCC---CcEEEEE-ECChHHHHHHHHHHHHH--HHHHHhhhhhccc--CHHHHHHHHHhcC
Confidence 99999884 789999999999 9999998 66521110000000000 0011111111112 7889999999998
|
... |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.9e-13 Score=117.74 Aligned_cols=151 Identities=13% Similarity=0.075 Sum_probs=106.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~ 254 (345)
..+|||||||+|.++..+++++ +.+++++|+ ++|++.|+ +..++.+|+.+ |++++ |+|++..+||+++|.+ +
T Consensus 52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~~~~~~d~~~lp~~d~sfD~v~~~~~l~~~~d~~--~ 128 (226)
T PRK05785 52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVADDKVVGSFEALPFRDKSFDVVMSSFALHASDNIE--K 128 (226)
T ss_pred CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhccceEEechhhCCCCCCCEEEEEecChhhccCCHH--H
Confidence 5799999999999999999987 578999999 99999888 66778899987 77754 9999999999998874 7
Q ss_pred HHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh---hhhhcCCC-------------ccCCHHHHHHH
Q 044482 255 ILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV---MYDLFPQA-------------KGRTAGEFKAL 318 (345)
Q Consensus 255 iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~-------------~~rt~~e~~~l 318 (345)
.|++++++|+| . +.|+ |.-.++... ........+... +.... ++ ...+.+++.++
T Consensus 129 ~l~e~~RvLkp---~--~~il-e~~~p~~~~--~~~~~~~y~~~~~P~~~~~~-~~~~~~Y~yl~~si~~f~~~~~~~~~ 199 (226)
T PRK05785 129 VIAEFTRVSRK---Q--VGFI-AMGKPDNVI--KRKYLSFYLRYIMPYIACLA-GAKCRDYKYIYYIYERLPTNSFHREI 199 (226)
T ss_pred HHHHHHHHhcC---c--eEEE-EeCCCCcHH--HHHHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHHHCCCHHHHHHH
Confidence 89999999999 4 3455 443333210 000000011100 00111 11 23478999999
Q ss_pred HHHCCCCceEEEecCCc-eEEEEEEc
Q 044482 319 AMAAGFGTIKVICRSYC-YWVIEFYK 343 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~-~~vi~~~k 343 (345)
++++| +.++.+...++ .++..++|
T Consensus 200 ~~~~~-~~~~~~~~~~G~~~~~~~~k 224 (226)
T PRK05785 200 FEKYA-DIKVYEERGLGLVYFVVGSS 224 (226)
T ss_pred HHHHh-CceEEEEccccEEEEEEEee
Confidence 99984 77888777654 45666655
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.52 E-value=5.3e-14 Score=117.39 Aligned_cols=135 Identities=19% Similarity=0.193 Sum_probs=94.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
....+|||||||.|.++..+++... +++++|. +.+++. .++.....+... ..+++ |+|++..+|||++|. .
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~d~--~ 95 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK-RNVVFDNFDAQDPPFPDGSFDLIICNDVLEHLPDP--E 95 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH-TTSEEEEEECHTHHCHSSSEEEEEEESSGGGSSHH--H
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh-hhhhhhhhhhhhhhccccchhhHhhHHHHhhcccH--H
Confidence 4567999999999999999966644 8999999 777766 323333332223 33333 999999999999974 6
Q ss_pred HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCCHHHHHHHHHHCCCCceE
Q 044482 254 KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
.+|+++++.|+| ||.+++. +...... ... ....+.+.... .....++.++|+++++++||++++
T Consensus 96 ~~l~~l~~~Lkp---gG~l~~~-~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~ 160 (161)
T PF13489_consen 96 EFLKELSRLLKP---GGYLVIS-DPNRDDP----SPR---SFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVE 160 (161)
T ss_dssp HHHHHHHHCEEE---EEEEEEE-EEBTTSH----HHH---HHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHhcCC---CCEEEEE-EcCCcch----hhh---HHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEE
Confidence 899999999999 9999999 7654321 000 01111111110 134578999999999999999875
|
... |
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.1e-13 Score=121.95 Aligned_cols=155 Identities=21% Similarity=0.172 Sum_probs=125.7
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~ 234 (345)
..+.+++.+. +.++.+|||||||.|.+++..+++| +.+++++++ ++..+.++ ++++...|..+....
T Consensus 60 k~~~~~~kl~-L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 60 KLDLILEKLG-LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred HHHHHHHhcC-CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 3457788888 9999999999999999999999999 899999999 55554443 688888887653323
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
-|-|+....++|+..+.-...++++++.|+| ||+++++ ....++.+.. ...++..--++|||..++..+
T Consensus 138 fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~---~G~~llh-~I~~~~~~~~-------~~~~~i~~yiFPgG~lPs~~~ 206 (283)
T COG2230 138 FDRIVSVGMFEHVGKENYDDFFKKVYALLKP---GGRMLLH-SITGPDQEFR-------RFPDFIDKYIFPGGELPSISE 206 (283)
T ss_pred cceeeehhhHHHhCcccHHHHHHHHHhhcCC---CceEEEE-EecCCCcccc-------cchHHHHHhCCCCCcCCCHHH
Confidence 5999999999999999989999999999999 9999999 7776654321 122333333457999999999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
..+..+++||.+.+....+
T Consensus 207 i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 207 ILELASEAGFVVLDVESLR 225 (283)
T ss_pred HHHHHHhcCcEEehHhhhc
Confidence 9999999999988776554
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.1e-13 Score=116.95 Aligned_cols=137 Identities=14% Similarity=0.066 Sum_probs=101.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+++.++ .....+|||+|||+|.++..++++ +.+++++|+ |.+++.++ ++++...|+.. ++++. |+
T Consensus 21 ~l~~~~~-~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 97 (195)
T TIGR00477 21 AVREAVK-TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNEDYDF 97 (195)
T ss_pred HHHHHhc-cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccCCCCE
Confidence 4555555 444579999999999999999985 468999999 77887654 46677778765 44444 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|++..++|++++++...+++++++.|+| ||+++|+ +....+....+. +.....+.+|+.+
T Consensus 98 I~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lli~-~~~~~~~~~~~~----------------~~~~~~~~~el~~ 157 (195)
T TIGR00477 98 IFSTVVFMFLQAGRVPEIIANMQAHTRP---GGYNLIV-AAMDTADYPCHM----------------PFSFTFKEDELRQ 157 (195)
T ss_pred EEEecccccCCHHHHHHHHHHHHHHhCC---CcEEEEE-EecccCCCCCCC----------------CcCccCCHHHHHH
Confidence 9999999999988888999999999999 9998887 654332211000 0112357889999
Q ss_pred HHHHCCCCceEEE
Q 044482 318 LAMAAGFGTIKVI 330 (345)
Q Consensus 318 ll~~aGf~~~~~~ 330 (345)
+++ +|+++...
T Consensus 158 ~f~--~~~~~~~~ 168 (195)
T TIGR00477 158 YYA--DWELLKYN 168 (195)
T ss_pred HhC--CCeEEEee
Confidence 886 48777665
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-13 Score=124.22 Aligned_cols=158 Identities=15% Similarity=0.084 Sum_probs=109.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .++..+|||||||.|.++..++++| +++++++.+ ++-.+.++ ++++...|+.+.-++-
T Consensus 51 ~~~~~~~~~-l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~~f 128 (273)
T PF02353_consen 51 LDLLCEKLG-LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPGKF 128 (273)
T ss_dssp HHHHHTTTT---TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG---S-
T ss_pred HHHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCCCC
Confidence 456788887 8889999999999999999999999 889999999 44444332 6889999987622233
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|.|++..++.|+..+....+++++.+.|+| ||++++. .....+.... .......++..--++|||...+..++
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~Lkp---gG~~~lq-~i~~~~~~~~---~~~~~~~~~i~kyiFPgg~lps~~~~ 201 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKP---GGRLVLQ-TITHRDPPYH---AERRSSSDFIRKYIFPGGYLPSLSEI 201 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSET---TEEEEEE-EEEE--HHHH---HCTTCCCHHHHHHTSTTS---BHHHH
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCC---CcEEEEE-ecccccccch---hhcCCCceEEEEeeCCCCCCCCHHHH
Confidence 999999999999988888999999999999 9999988 7766543211 00011123333344578999999999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
...++++||++..+...+
T Consensus 202 ~~~~~~~~l~v~~~~~~~ 219 (273)
T PF02353_consen 202 LRAAEDAGLEVEDVENLG 219 (273)
T ss_dssp HHHHHHTT-EEEEEEE-H
T ss_pred HHHHhcCCEEEEEEEEcC
Confidence 999999999998877653
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.9e-13 Score=117.37 Aligned_cols=178 Identities=11% Similarity=0.036 Sum_probs=115.4
Q ss_pred hhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccC-cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 142 CIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKG-FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 142 ~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~-~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
|+.+..++.....+...|..........+++.+.. .....+|||||||+|.++..+++. ..+++++|. |.+++.++
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~ 94 (219)
T TIGR02021 17 WARIYGSGDPVSRVRQTVREGRAAMRRKLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMAR 94 (219)
T ss_pred HHHhhCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHH
Confidence 33333444444556666644444444555555441 334689999999999999999876 458999998 88887665
Q ss_pred ----------CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh
Q 044482 220 ----------CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI 289 (345)
Q Consensus 220 ----------ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~ 289 (345)
++++..+|+.+...+-|+|++..+++++++++...+++++++.+++ ++.+.+. +.. . ..
T Consensus 95 ~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~---~~~i~~~-----~~~--~-~~ 163 (219)
T TIGR02021 95 NRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMDVLIHYPASDMAKALGHLASLTKE---RVIFTFA-----PKT--A-WL 163 (219)
T ss_pred HHHHhcCCCCceEEEECChhhCCCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCC---CEEEEEC-----CCc--h-HH
Confidence 5789999987632233999999999999988888899999998887 5433222 111 0 00
Q ss_pred hhhhhccchhhhh--hcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 290 NRNILTLDIVMYD--LFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 290 ~~~~~~~d~~~~~--~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
... ..+.-.... ....-..++.++++++++++||++++.....
T Consensus 164 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~ 208 (219)
T TIGR02021 164 AFL-KMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVS 208 (219)
T ss_pred HHH-HHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeeccc
Confidence 000 000000000 0001234589999999999999999887664
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.1e-14 Score=106.16 Aligned_cols=85 Identities=21% Similarity=0.310 Sum_probs=73.5
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 184 VDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
||||||+|..+..++++ +..+++++|. +.+++.++ +++++.+|+.+ ++|++ |+|++.+++|++ ++..
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~~~~ 77 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--EDPE 77 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEESHGGGS--SHHH
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCccccccccccccccceeec--cCHH
Confidence 79999999999999999 8889999999 77777666 56799999988 77755 999999999999 4446
Q ss_pred HHHHHHHhhCCCCCCCcEEEE
Q 044482 254 KILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli 274 (345)
+++++++|+||| ||+++|
T Consensus 78 ~~l~e~~rvLk~---gG~l~~ 95 (95)
T PF08241_consen 78 AALREIYRVLKP---GGRLVI 95 (95)
T ss_dssp HHHHHHHHHEEE---EEEEEE
T ss_pred HHHHHHHHHcCc---CeEEeC
Confidence 899999999999 999876
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=8.2e-13 Score=117.49 Aligned_cols=141 Identities=12% Similarity=-0.003 Sum_probs=98.0
Q ss_pred ccccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC-C-CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS-G-QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~-~-D~i~~~~v 243 (345)
.+..+|||||||+|.++..|++. .|+.+++++|+ |.+++.++ ++++..++... +.++ . |+|+++.+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~~ 138 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNHF 138 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECCe
Confidence 45679999999999999988764 46679999999 88988776 46666665433 3343 3 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh------hhcCC----CccCCHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY------DLFPQ----AKGRTAG 313 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~------~~~~~----~~~rt~~ 313 (345)
|||+++++..++|+++++.++. .++|. |...+.. . . . ........ ...++ ...+|.+
T Consensus 139 lhh~~d~~~~~~l~~~~r~~~~-----~~~i~-dl~~~~~--~-~---~-~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~ 205 (232)
T PRK06202 139 LHHLDDAEVVRLLADSAALARR-----LVLHN-DLIRSRL--A-Y---A-LFWAGTRLLSRSSFVHTDGLLSVRRSYTPA 205 (232)
T ss_pred eecCChHHHHHHHHHHHHhcCe-----eEEEe-ccccCHH--H-H---H-HHHHHHHHhccCceeeccchHHHHhhcCHH
Confidence 9999998888999999999874 56666 5543311 0 0 0 00000000 00000 1357899
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
|+.+++++ ||++.+..+.
T Consensus 206 el~~ll~~-Gf~~~~~~~~ 223 (232)
T PRK06202 206 ELAALAPQ-GWRVERQWPF 223 (232)
T ss_pred HHHHHhhC-CCeEEeccce
Confidence 99999999 9998776554
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=120.77 Aligned_cols=130 Identities=15% Similarity=0.138 Sum_probs=92.4
Q ss_pred CcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHh
Q 044482 138 HIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVI 215 (345)
Q Consensus 138 g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i 215 (345)
|..+|+-+.+.|+.... ..-+. .-...++.+++.++ ...+|||+|||+|..+..|+++.+ ..+++++|+ ++|+
T Consensus 27 G~~lf~~i~~~peYy~t-r~E~~-il~~~~~~ia~~~~---~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL 101 (301)
T TIGR03438 27 GSELFEQICELPEYYPT-RTEAA-ILERHADEIAAATG---AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADAL 101 (301)
T ss_pred HHHHHHHHHCCCccccH-HHHHH-HHHHHHHHHHHhhC---CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHH
Confidence 44555555555554321 11111 11122345555543 446899999999999999999987 588999999 7787
Q ss_pred hhCC----------CceEEeccCCcC--CCC-----C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 216 KNAP----------CVEHVEGDMFVN--VPS-----G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 216 ~~a~----------ri~~~~gd~~~~--~p~-----~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+. +++++.+|+.+. ++. . .++++.+.+++++++++..+|++++++|+| ||.++|.
T Consensus 102 ~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~~e~~~~L~~i~~~L~p---gG~~lig 176 (301)
T TIGR03438 102 KESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGFFPGSTIGNFTPEEAVAFLRRIRQLLGP---GGGLLIG 176 (301)
T ss_pred HHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEEEecccccCCCHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 6554 466789999873 332 2 356677899999999999999999999999 9998874
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.43 E-value=8.8e-14 Score=106.79 Aligned_cols=84 Identities=20% Similarity=0.324 Sum_probs=58.0
Q ss_pred EEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCC-C-CEEEeccccccCC
Q 044482 184 VDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNWS 248 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~~ 248 (345)
||||||+|.++..+++++|..+++++|+ |.+++.++ ++++...|.++..+. . |+|++.++|||++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l~ 80 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHLE 80 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--S
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhhh
Confidence 7999999999999999999999999999 88997776 234444444443332 4 9999999999994
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
+ ...+|+++++.|+| ||+|
T Consensus 81 ~--~~~~l~~~~~~L~p---gG~l 99 (99)
T PF08242_consen 81 D--IEAVLRNIYRLLKP---GGIL 99 (99)
T ss_dssp ---HHHHHHHHTTT-TS---S-EE
T ss_pred h--HHHHHHHHHHHcCC---CCCC
Confidence 4 45899999999999 9975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.1e-12 Score=113.79 Aligned_cols=132 Identities=17% Similarity=0.168 Sum_probs=101.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCCC--CEEEeccccccCChh
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~ 250 (345)
..+|||||||+|.++..+++.+|..+++++|. +.+++.++ +++++.+|+.+ ++++. |+|++.+++|+.++.
T Consensus 35 ~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~~~~~~ 114 (240)
T TIGR02072 35 PASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPLEDSSFDLIVSNLALQWCDDL 114 (240)
T ss_pred CCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCCCCCceeEEEEhhhhhhccCH
Confidence 46899999999999999999999999999999 77776555 68999999987 55543 999999999988775
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEE
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 330 (345)
.++|+++++.|+| ||.+++. +...... .. .... .... +....+.++|.+++.++ |+.+.+.
T Consensus 115 --~~~l~~~~~~L~~---~G~l~~~-~~~~~~~-----~~----~~~~--~~~~-~~~~~~~~~~~~~l~~~-f~~~~~~ 175 (240)
T TIGR02072 115 --SQALSELARVLKP---GGLLAFS-TFGPGTL-----HE----LRQS--FGQH-GLRYLSLDELKALLKNS-FELLTLE 175 (240)
T ss_pred --HHHHHHHHHHcCC---CcEEEEE-eCCccCH-----HH----HHHH--HHHh-ccCCCCHHHHHHHHHHh-cCCcEEE
Confidence 4789999999999 9999988 5432211 00 0000 0111 34456889999999998 8877654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.1e-12 Score=114.35 Aligned_cols=145 Identities=10% Similarity=0.102 Sum_probs=103.2
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CE
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QA 237 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~ 237 (345)
.+..+++.++ .....+|||+|||+|.++..+++. ..+++++|+ |.+++.++ .+.++.+|+.+ +++++ |+
T Consensus 30 ~a~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~~~~fD~ 106 (251)
T PRK10258 30 SADALLAMLP-QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLATATFDL 106 (251)
T ss_pred HHHHHHHhcC-ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCCCCcEEE
Confidence 3455666665 445678999999999999988764 468999999 88988777 36789999977 66654 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++..+|+.++. ..+|++++++|+| ||.+++. ......-+ .........+. ... .....+.+++.+
T Consensus 107 V~s~~~l~~~~d~--~~~l~~~~~~Lk~---gG~l~~~-~~~~~~~~---el~~~~~~~~~---~~~-~~~~~~~~~l~~ 173 (251)
T PRK10258 107 AWSNLAVQWCGNL--STALRELYRVVRP---GGVVAFT-TLVQGSLP---ELHQAWQAVDE---RPH-ANRFLPPDAIEQ 173 (251)
T ss_pred EEECchhhhcCCH--HHHHHHHHHHcCC---CeEEEEE-eCCCCchH---HHHHHHHHhcc---CCc-cccCCCHHHHHH
Confidence 9999999877665 5789999999999 9999988 55432211 00000000010 011 233468899999
Q ss_pred HHHHCCCCc
Q 044482 318 LAMAAGFGT 326 (345)
Q Consensus 318 ll~~aGf~~ 326 (345)
++...|+..
T Consensus 174 ~l~~~~~~~ 182 (251)
T PRK10258 174 ALNGWRYQH 182 (251)
T ss_pred HHHhCCcee
Confidence 999988764
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.6e-12 Score=117.88 Aligned_cols=128 Identities=16% Similarity=0.125 Sum_probs=97.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
...+|||||||+|..+..+++. +.+++++|. +.+++.++ ++++..+|+.+ .++.. |+|++..+||++
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcchhhhC
Confidence 4469999999999999999885 478999999 77777554 57788888876 34444 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++++...+++++++.|+| ||.++++ ..+..+....+ .+-...++.+|++++++. |+++
T Consensus 198 ~~~~~~~~l~~~~~~Lkp---gG~~l~v-~~~~~~~~~~~----------------~p~~~~~~~~el~~~~~~--~~i~ 255 (287)
T PRK12335 198 NRERIPAIIKNMQEHTNP---GGYNLIV-CAMDTEDYPCP----------------MPFSFTFKEGELKDYYQD--WEIV 255 (287)
T ss_pred CHHHHHHHHHHHHHhcCC---CcEEEEE-EecccccCCCC----------------CCCCcccCHHHHHHHhCC--CEEE
Confidence 988889999999999999 9998877 54432221100 001223568899999865 8887
Q ss_pred EEE
Q 044482 328 KVI 330 (345)
Q Consensus 328 ~~~ 330 (345)
+..
T Consensus 256 ~~~ 258 (287)
T PRK12335 256 KYN 258 (287)
T ss_pred EEe
Confidence 764
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.5e-12 Score=113.24 Aligned_cols=99 Identities=13% Similarity=0.296 Sum_probs=84.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC--CEEEeccccccCChh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~ 250 (345)
....+|||||||+|.++..+++..|..+++++|+ +++++.|+ ++++..+|+.++++++ |+|++..+|||++++
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~vL~hl~p~ 121 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKGVLIHINPD 121 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECChhhhCCHH
Confidence 3557899999999999999999889999999999 88988876 6889999998866643 999999999999988
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+..++++++++.++ +.++|. |...+.
T Consensus 122 ~~~~~l~el~r~~~-----~~v~i~-e~~~~~ 147 (204)
T TIGR03587 122 NLPTAYRELYRCSN-----RYILIA-EYYNPS 147 (204)
T ss_pred HHHHHHHHHHhhcC-----cEEEEE-EeeCCC
Confidence 88999999999864 477777 775543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-12 Score=111.49 Aligned_cols=123 Identities=18% Similarity=0.206 Sum_probs=95.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i 238 (345)
+++.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|...+++.. |+|
T Consensus 23 ~~~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D~v 101 (187)
T PRK08287 23 ALSKLE-LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKADAI 101 (187)
T ss_pred HHHhcC-CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCCEE
Confidence 345555 66778999999999999999999999999999999 77777664 5788889876555544 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++....+++ ..+++++++.|+| ||++++. .... -+.+++.++
T Consensus 102 ~~~~~~~~~-----~~~l~~~~~~Lk~---gG~lv~~-~~~~-----------------------------~~~~~~~~~ 143 (187)
T PRK08287 102 FIGGSGGNL-----TAIIDWSLAHLHP---GGRLVLT-FILL-----------------------------ENLHSALAH 143 (187)
T ss_pred EECCCccCH-----HHHHHHHHHhcCC---CeEEEEE-EecH-----------------------------hhHHHHHHH
Confidence 998765443 4689999999999 9998776 3210 124667889
Q ss_pred HHHCCCCceEEEe
Q 044482 319 AMAAGFGTIKVIC 331 (345)
Q Consensus 319 l~~aGf~~~~~~~ 331 (345)
+++.||+.++++.
T Consensus 144 l~~~g~~~~~~~~ 156 (187)
T PRK08287 144 LEKCGVSELDCVQ 156 (187)
T ss_pred HHHCCCCcceEEE
Confidence 9999998777543
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=127.16 Aligned_cols=140 Identities=17% Similarity=0.175 Sum_probs=108.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc---CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV---NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~---~~p~~- 235 (345)
..+++.++ .....+|||||||+|.++..+++.+. +++++|. +.+++.++ +++++.+|+.+ ++|++
T Consensus 27 ~~il~~l~-~~~~~~vLDlGcG~G~~~~~la~~~~--~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~~~~~~ 103 (475)
T PLN02336 27 PEILSLLP-PYEGKSVLELGAGIGRFTGELAKKAG--QVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLNISDGS 103 (475)
T ss_pred hHHHhhcC-ccCCCEEEEeCCCcCHHHHHHHhhCC--EEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccCCCCCC
Confidence 45666666 44567999999999999999998864 6899998 77876553 68899999964 44543
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++|++++++..++|+++++.|+| ||++++. |.+........ .. .. ....|+..+
T Consensus 104 fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~---gG~l~~~-d~~~~~~~~~~------~~-------~~-~~~~~~~~~ 165 (475)
T PLN02336 104 VDLIFSNWLLMYLSDKEVENLAERMVKWLKV---GGYIFFR-ESCFHQSGDSK------RK-------NN-PTHYREPRF 165 (475)
T ss_pred EEEEehhhhHHhCCHHHHHHHHHHHHHhcCC---CeEEEEE-eccCCCCCccc------cc-------CC-CCeecChHH
Confidence 999999999999999889999999999999 9999999 87654331100 00 11 233466889
Q ss_pred HHHHHHHCCCCceE
Q 044482 315 FKALAMAAGFGTIK 328 (345)
Q Consensus 315 ~~~ll~~aGf~~~~ 328 (345)
|.+++.++||....
T Consensus 166 ~~~~f~~~~~~~~~ 179 (475)
T PLN02336 166 YTKVFKECHTRDED 179 (475)
T ss_pred HHHHHHHheeccCC
Confidence 99999999998754
|
|
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.6e-12 Score=110.95 Aligned_cols=142 Identities=11% Similarity=0.073 Sum_probs=96.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-CCEEEeccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-GQAIFTKSVLL 245 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~D~i~~~~vlh 245 (345)
.+..+|||||||+|.++..++++.+ +++++|+ +.+++.++ ++++..+|+ +.... -|+|++..++|
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~--~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~fD~v~~~~~l~ 138 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA--KVVASDISPQMVEEARERAPEAGLAGNITFEVGDL-ESLLGRFDTVVCLDVLI 138 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc-hhccCCcCEEEEcchhh
Confidence 4457999999999999999998754 5999998 77777665 578888984 32223 39999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-hhhcCCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-YDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
||+++....+++++.+.+++ |.++.. .. .. . ............. ..........+.++|.++++++||
T Consensus 139 ~~~~~~~~~~l~~l~~~~~~----~~~i~~-~~---~~--~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf 207 (230)
T PRK07580 139 HYPQEDAARMLAHLASLTRG----SLIFTF-AP---YT--P-LLALLHWIGGLFPGPSRTTRIYPHREKGIRRALAAAGF 207 (230)
T ss_pred cCCHHHHHHHHHHHHhhcCC----eEEEEE-CC---cc--H-HHHHHHHhccccCCccCCCCccccCHHHHHHHHHHCCC
Confidence 99999999999999987654 333333 11 11 0 0000000000000 000012334688999999999999
Q ss_pred CceEEEecC
Q 044482 325 GTIKVICRS 333 (345)
Q Consensus 325 ~~~~~~~~~ 333 (345)
++.++.+..
T Consensus 208 ~~~~~~~~~ 216 (230)
T PRK07580 208 KVVRTERIS 216 (230)
T ss_pred ceEeeeecc
Confidence 999987765
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.1e-13 Score=105.19 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=71.4
Q ss_pred eEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEec-ccccc
Q 044482 183 LVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTK-SVLLN 246 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~-~vlh~ 246 (345)
|||+|||+|..+..+++.+ |+.+++++|+ +++++.++ +++++.+|+.+ ++..+ |+|++. .++||
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~~ 80 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCSGLSLHH 80 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-TTGGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEcCCccCC
Confidence 7999999999999999997 5689999999 88888766 67999999987 54443 999995 55999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHG 270 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG 270 (345)
+++++..++|+++++.|+| ||
T Consensus 81 ~~~~~~~~ll~~~~~~l~p---gG 101 (101)
T PF13649_consen 81 LSPEELEALLRRIARLLRP---GG 101 (101)
T ss_dssp SSHHHHHHHHHHHHHTEEE---EE
T ss_pred CCHHHHHHHHHHHHHHhCC---CC
Confidence 9999999999999999999 87
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.9e-12 Score=117.09 Aligned_cols=95 Identities=20% Similarity=0.316 Sum_probs=79.9
Q ss_pred ccccceEEecCCccH----HHHHHHHHCC-----CCeEEEeeh-hhHhhhCC----------------------------
Q 044482 178 KELKKLVDVASCLGA----NMSLIVNTYP-----QITGINFDL-PYVIKNAP---------------------------- 219 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~----~~~~l~~~~p-----~~~~~~~Dl-p~~i~~a~---------------------------- 219 (345)
....+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|+
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 345799999999996 5667777665 478999999 88887554
Q ss_pred --------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|+.+ +.|.+ |+|+|+++||+|+++...+++++++++|+| ||.+++-
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~p---GG~L~lg 241 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKP---GGYLFLG 241 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCC---CeEEEEE
Confidence 36889999998 44433 999999999999999889999999999999 9999987
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=6e-12 Score=110.96 Aligned_cols=141 Identities=16% Similarity=0.113 Sum_probs=98.8
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh----hCC---CceEEeccCCcC-----CCCC-CEE
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK----NAP---CVEHVEGDMFVN-----VPSG-QAI 238 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~----~a~---ri~~~~gd~~~~-----~p~~-D~i 238 (345)
.++ ..+..+|||+|||+|.++..+++..+..+++++|. +++++ .++ ++.++.+|..++ +++. |+|
T Consensus 67 ~l~-i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i 145 (226)
T PRK04266 67 NFP-IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVI 145 (226)
T ss_pred hCC-CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEE
Confidence 455 66778999999999999999999988778999999 76665 333 789999998653 2233 888
Q ss_pred EeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 239 FTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 239 ~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
+ |+.+++ +...+|+++++.||| ||+++|.-.. .+ .|+.. ... +..++..+
T Consensus 146 ~-----~d~~~p~~~~~~L~~~~r~LKp---GG~lvI~v~~-~~--------------~d~~~-----~~~-~~~~~~~~ 196 (226)
T PRK04266 146 Y-----QDVAQPNQAEIAIDNAEFFLKD---GGYLLLAIKA-RS--------------IDVTK-----DPK-EIFKEEIR 196 (226)
T ss_pred E-----ECCCChhHHHHHHHHHHHhcCC---CcEEEEEEec-cc--------------ccCcC-----CHH-HHHHHHHH
Confidence 7 444443 334678999999999 9999993021 10 01000 001 11244569
Q ss_pred HHHHCCCCceEEEecCCc---eEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSYC---YWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~---~~vi~~~k 343 (345)
+++++||+.++....... +..+.+++
T Consensus 197 ~l~~aGF~~i~~~~l~p~~~~h~~~v~~~ 225 (226)
T PRK04266 197 KLEEGGFEILEVVDLEPYHKDHAAVVARK 225 (226)
T ss_pred HHHHcCCeEEEEEcCCCCcCCeEEEEEEc
Confidence 999999999999887543 77777665
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.1e-12 Score=107.36 Aligned_cols=130 Identities=18% Similarity=0.192 Sum_probs=102.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~ 248 (345)
...+|||+|||+|.++..+++..+ +++++|+ |.+++.++ +++++.+|+++..+.. |+|+++..+|+.+
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n~p~~~~~ 96 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFNPPYLPLE 96 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEECCCCCCCc
Confidence 346899999999999999999876 8999998 88887666 5788899988743433 9999998887775
Q ss_pred hhH-------------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCcc
Q 044482 249 DEQ-------------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 249 d~~-------------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
++. ..++|+++.+.|+| ||+++++ +...
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~~~~~-~~~~----------------------------- 143 (179)
T TIGR00537 97 DDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKE---GGRVQLI-QSSL----------------------------- 143 (179)
T ss_pred chhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCC---CCEEEEE-Eecc-----------------------------
Confidence 431 35689999999999 9999998 3211
Q ss_pred CCHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 310 RTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
....++.++++++||....+..-....-.++++|
T Consensus 144 ~~~~~~~~~l~~~gf~~~~~~~~~~~~~~~~~~~ 177 (179)
T TIGR00537 144 NGEPDTFDKLDERGFRYEIVAERGLFFEELFAIK 177 (179)
T ss_pred CChHHHHHHHHhCCCeEEEEEEeecCceEEEEEE
Confidence 1146778999999999988877776777777766
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.6e-11 Score=116.71 Aligned_cols=150 Identities=13% Similarity=0.057 Sum_probs=112.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCcCCCCC-CEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFVNVPSG-QAIF 239 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~~~p~~-D~i~ 239 (345)
..+++.++ ..+..+|||||||+|.++..+++++ +.+++++|+ +++++.++ ++++..+|+.+. +.. |+|+
T Consensus 157 ~~l~~~l~-l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l-~~~fD~Iv 233 (383)
T PRK11705 157 DLICRKLQ-LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDL-NGQFDRIV 233 (383)
T ss_pred HHHHHHhC-CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhc-CCCCCEEE
Confidence 35666666 6777899999999999999999876 679999999 88887766 467777887542 333 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+..+++|.+++....+++++++.|+| ||++++. +...+...... . ..++- . .+++|...+.+++.+.+
T Consensus 234 s~~~~ehvg~~~~~~~l~~i~r~Lkp---GG~lvl~-~i~~~~~~~~~-~----~~i~~--y-ifp~g~lps~~~i~~~~ 301 (383)
T PRK11705 234 SVGMFEHVGPKNYRTYFEVVRRCLKP---DGLFLLH-TIGSNKTDTNV-D----PWINK--Y-IFPNGCLPSVRQIAQAS 301 (383)
T ss_pred EeCchhhCChHHHHHHHHHHHHHcCC---CcEEEEE-EccCCCCCCCC-C----CCcee--e-ecCCCcCCCHHHHHHHH
Confidence 99999999888778999999999999 9999998 76544322111 0 11111 1 23577788899988886
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+ .||.+.++...+
T Consensus 302 ~-~~~~v~d~~~~~ 314 (383)
T PRK11705 302 E-GLFVMEDWHNFG 314 (383)
T ss_pred H-CCcEEEEEecCh
Confidence 6 589887776554
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.34 E-value=9.6e-12 Score=111.51 Aligned_cols=150 Identities=17% Similarity=0.172 Sum_probs=100.6
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--~ 234 (345)
..+...++++. .++|||||||.|+++-.++++.|. .++++|- +...-+.+ ++.+.+ ...+.+| .
T Consensus 105 ~rl~p~l~~L~-gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lp-lgvE~Lp~~~ 181 (315)
T PF08003_consen 105 DRLLPHLPDLK-GKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEAIKHFLGQDPPVFELP-LGVEDLPNLG 181 (315)
T ss_pred HHHHhhhCCcC-CCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHHHHHHhCCCccEEEcC-cchhhccccC
Confidence 34555554243 479999999999999999998765 6899996 22222111 222322 2223344 3
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC-CccCCH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ-AKGRTA 312 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-~~~rt~ 312 (345)
. |+|++-.||+|..++ ...|+++++.|+| ||.+++- ..+.+.+...-......+.. + +| -...|.
T Consensus 182 ~FDtVF~MGVLYHrr~P--l~~L~~Lk~~L~~---gGeLvLE-Tlvi~g~~~~~L~P~~rYa~------m-~nv~FiPs~ 248 (315)
T PF08003_consen 182 AFDTVFSMGVLYHRRSP--LDHLKQLKDSLRP---GGELVLE-TLVIDGDENTVLVPEDRYAK------M-RNVWFIPSV 248 (315)
T ss_pred CcCEEEEeeehhccCCH--HHHHHHHHHhhCC---CCEEEEE-EeeecCCCceEEccCCcccC------C-CceEEeCCH
Confidence 3 999999999999988 5889999999999 9988877 66666543221111001110 0 01 124589
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
..++.||+++||+.+++....
T Consensus 249 ~~L~~wl~r~gF~~v~~v~~~ 269 (315)
T PF08003_consen 249 AALKNWLERAGFKDVRCVDVS 269 (315)
T ss_pred HHHHHHHHHcCCceEEEecCc
Confidence 999999999999999987663
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-12 Score=111.88 Aligned_cols=139 Identities=13% Similarity=0.060 Sum_probs=100.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCC--CCCEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVP--SGQAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p--~~D~i~~~~vlh~~ 247 (345)
..+|||||||.|.++..+++.. .+++++|+ ++.|+.|+ .+++.+....+ ... +-|+|+|..||+|.
T Consensus 60 g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv 137 (243)
T COG2227 60 GLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHV 137 (243)
T ss_pred CCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHcc
Confidence 4789999999999999999986 88999999 77888777 44566666555 222 22999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch-hhhhhcCCC-----ccCCHHHHHHHHHH
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI-VMYDLFPQA-----KGRTAGEFKALAMA 321 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~-~~~~~~~~~-----~~rt~~e~~~ll~~ 321 (345)
+|++ .+++.|.+.+|| ||.+++. ..... ...+....+.. ..+-+.+.| +...++|...++..
T Consensus 138 ~dp~--~~~~~c~~lvkP---~G~lf~S-Tinrt------~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~~ 205 (243)
T COG2227 138 PDPE--SFLRACAKLVKP---GGILFLS-TINRT------LKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLLG 205 (243)
T ss_pred CCHH--HHHHHHHHHcCC---CcEEEEe-ccccC------HHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhccc
Confidence 9996 589999999999 9988888 44321 11111111111 111122233 45678899999999
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
+|+++.....+
T Consensus 206 ~~~~~~~~~g~ 216 (243)
T COG2227 206 ANLKIIDRKGL 216 (243)
T ss_pred CCceEEeecce
Confidence 99998877554
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=111.88 Aligned_cols=94 Identities=18% Similarity=0.151 Sum_probs=77.1
Q ss_pred ccccceEEecCCccHHHHH--HHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC--CC-CEEEe
Q 044482 178 KELKKLVDVASCLGANMSL--IVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP--SG-QAIFT 240 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~--l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p--~~-D~i~~ 240 (345)
..+++|+|||||.|-++.. +++.+|+.+++++|. |++++.|+ |++|..+|..+..+ .. |+|++
T Consensus 122 ~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~ 201 (296)
T PLN03075 122 GVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFL 201 (296)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEE
Confidence 3668999999997744333 335689999999999 77776554 79999999988433 33 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ++|+|+.++..++|+++++.|+| ||.+++-
T Consensus 202 ~-ALi~~dk~~k~~vL~~l~~~LkP---GG~Lvlr 232 (296)
T PLN03075 202 A-ALVGMDKEEKVKVIEHLGKHMAP---GALLMLR 232 (296)
T ss_pred e-cccccccccHHHHHHHHHHhcCC---CcEEEEe
Confidence 9 99999877778999999999999 9988877
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=108.90 Aligned_cols=103 Identities=14% Similarity=0.193 Sum_probs=83.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i 238 (345)
.+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ ..+++.+|.++..+.. |+|
T Consensus 187 lLl~~l~-~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~fDlI 265 (342)
T PRK09489 187 LLLSTLT-PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRFDMI 265 (342)
T ss_pred HHHHhcc-ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCccEE
Confidence 3445554 23345899999999999999999999999999999 67787765 4567888888755444 999
Q ss_pred EeccccccC---ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNW---SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++-.+|+. +.+...++++++.+.|+| ||+++|+
T Consensus 266 vsNPPFH~g~~~~~~~~~~~i~~a~~~Lkp---gG~L~iV 302 (342)
T PRK09489 266 ISNPPFHDGIQTSLDAAQTLIRGAVRHLNS---GGELRIV 302 (342)
T ss_pred EECCCccCCccccHHHHHHHHHHHHHhcCc---CCEEEEE
Confidence 999999863 345567899999999999 9999988
|
|
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.4e-11 Score=114.42 Aligned_cols=104 Identities=13% Similarity=0.178 Sum_probs=85.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~ 234 (345)
+-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|.++.++.
T Consensus 218 rllL~~lp-~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~ 296 (378)
T PRK15001 218 RFFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEP 296 (378)
T ss_pred HHHHHhCC-cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCC
Confidence 34667776 44446999999999999999999999999999999 56676654 468889999886553
Q ss_pred -C-CEEEeccccc---cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLL---NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++--+| .++++.+.++++.+++.|+| ||+++|+
T Consensus 297 ~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~Lkp---GG~L~iV 339 (378)
T PRK15001 297 FRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIV 339 (378)
T ss_pred CCEEEEEECcCcccCccCCHHHHHHHHHHHHHhccc---CCEEEEE
Confidence 3 9999985554 35667778999999999999 9999998
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-12 Score=107.62 Aligned_cols=137 Identities=17% Similarity=0.136 Sum_probs=95.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------C-ceEEeccCCcCCCC-C--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------C-VEHVEGDMFVNVPS-G--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------r-i~~~~gd~~~~~p~-~--D~i~~~~vlh 245 (345)
...+.||.|+|.|..+..++-.+= -++-++|. +..++.|+ + .++...-+.+-.|+ + |+||+.|++-
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f-~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lg 133 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVF-DEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLG 133 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GG
T ss_pred CcceEEecccccchhHHHHHHHhc-CEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhc
Confidence 357899999999999998765431 24666665 66666665 2 34444444343342 3 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
|++|++.+..|++|+++|+| +|.|+|- |.+..... ..+| -.+++-.|+.+.|++++++||++
T Consensus 134 hLTD~dlv~fL~RCk~~L~~---~G~IvvK-EN~~~~~~---------~~~D-----~~DsSvTRs~~~~~~lF~~AGl~ 195 (218)
T PF05891_consen 134 HLTDEDLVAFLKRCKQALKP---NGVIVVK-ENVSSSGF---------DEFD-----EEDSSVTRSDEHFRELFKQAGLR 195 (218)
T ss_dssp GS-HHHHHHHHHHHHHHEEE---EEEEEEE-EEEESSSE---------EEEE-----TTTTEEEEEHHHHHHHHHHCT-E
T ss_pred cCCHHHHHHHHHHHHHhCcC---CcEEEEE-ecCCCCCC---------cccC-----CccCeeecCHHHHHHHHHHcCCE
Confidence 99999999999999999999 9999999 88765431 1223 12356679999999999999999
Q ss_pred ceEEEecCC
Q 044482 326 TIKVICRSY 334 (345)
Q Consensus 326 ~~~~~~~~~ 334 (345)
+++.....+
T Consensus 196 ~v~~~~Q~~ 204 (218)
T PF05891_consen 196 LVKEEKQKG 204 (218)
T ss_dssp EEEEEE-TT
T ss_pred EEEeccccC
Confidence 998766543
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.4e-10 Score=99.10 Aligned_cols=159 Identities=19% Similarity=0.122 Sum_probs=116.7
Q ss_pred cccc-ceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH---hh----hCC--Cc-eEEeccCCcC-CC---------CC
Q 044482 178 KELK-KLVDVASCLGANMSLIVNTYPQITGINFDLP-YV---IK----NAP--CV-EHVEGDMFVN-VP---------SG 235 (345)
Q Consensus 178 ~~~~-~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~---i~----~a~--ri-~~~~gd~~~~-~p---------~~ 235 (345)
.... +||+||+|+|.-+..+++++|+++..--|.. .. |+ .+. ++ .-+.-|+.++ .| ..
T Consensus 23 ~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~ 102 (204)
T PF06080_consen 23 PDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPES 102 (204)
T ss_pred CccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCC
Confidence 3444 5999999999999999999999987666652 21 21 222 21 1223455442 22 13
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++.|++|..+-+.+..+++.+.+.|+| ||.+++- ..+..+..-.+ .....+|-..-...+....|..++
T Consensus 103 ~D~i~~~N~lHI~p~~~~~~lf~~a~~~L~~---gG~L~~Y-GPF~~~G~~ts---~SN~~FD~sLr~rdp~~GiRD~e~ 175 (204)
T PF06080_consen 103 FDAIFCINMLHISPWSAVEGLFAGAARLLKP---GGLLFLY-GPFNRDGKFTS---ESNAAFDASLRSRDPEWGIRDIED 175 (204)
T ss_pred cceeeehhHHHhcCHHHHHHHHHHHHHhCCC---CCEEEEe-CCcccCCEeCC---cHHHHHHHHHhcCCCCcCccCHHH
Confidence 999999999999999999999999999999 9999999 77765432111 122445655554445667899999
Q ss_pred HHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 315 FKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+.++.+++||+..+.+.+|.+.-+++++|
T Consensus 176 v~~lA~~~GL~l~~~~~MPANN~~Lvfrk 204 (204)
T PF06080_consen 176 VEALAAAHGLELEEDIDMPANNLLLVFRK 204 (204)
T ss_pred HHHHHHHCCCccCcccccCCCCeEEEEeC
Confidence 99999999999999999998766666665
|
The function of this family is unknown. |
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.3e-11 Score=109.81 Aligned_cols=134 Identities=12% Similarity=0.129 Sum_probs=90.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCCCC-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++|..+|+.+ +... |+|++..+
T Consensus 145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~-l~~~fD~Vv~~~v 221 (315)
T PLN02585 145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES-LSGKYDTVTCLDV 221 (315)
T ss_pred CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh-cCCCcCEEEEcCE
Confidence 469999999999999999986 468999999 78887665 24677777643 2333 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC------ccCCHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA------KGRTAGEFKA 317 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~------~~rt~~e~~~ 317 (345)
+||++++....+++++.+ +.+ + +++|. .. +... .. ..+...- ...++. ...+.+++++
T Consensus 222 L~H~p~~~~~~ll~~l~~-l~~---g-~liIs-~~--p~~~---~~----~~l~~~g-~~~~g~~~~~r~y~~s~eel~~ 285 (315)
T PLN02585 222 LIHYPQDKADGMIAHLAS-LAE---K-RLIIS-FA--PKTL---YY----DILKRIG-ELFPGPSKATRAYLHAEADVER 285 (315)
T ss_pred EEecCHHHHHHHHHHHHh-hcC---C-EEEEE-eC--Ccch---HH----HHHHHHH-hhcCCCCcCceeeeCCHHHHHH
Confidence 999999887788888875 455 4 44444 21 1110 00 0001000 011111 1237999999
Q ss_pred HHHHCCCCceEEEec
Q 044482 318 LAMAAGFGTIKVICR 332 (345)
Q Consensus 318 ll~~aGf~~~~~~~~ 332 (345)
+|+++||++.+..-.
T Consensus 286 lL~~AGf~v~~~~~~ 300 (315)
T PLN02585 286 ALKKAGWKVARREMT 300 (315)
T ss_pred HHHHCCCEEEEEEEe
Confidence 999999998765433
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.5e-10 Score=97.67 Aligned_cols=125 Identities=18% Similarity=0.105 Sum_probs=93.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-CEEEecccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~ 246 (345)
...+|||||||+|..+..++++.|+.+++++|. +.+++.++ +++++.+|+.+ +.... |+|++..+
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEccc---
Confidence 367999999999999999999999999999999 77877665 58999999877 33223 99998753
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
. ....+++++++.|+| ||++++. +.. . ...++.++.++.|+.+
T Consensus 122 -~--~~~~~l~~~~~~Lkp---GG~lv~~-~~~---~---------------------------~~~~l~~~~~~~~~~~ 164 (187)
T PRK00107 122 -A--SLSDLVELCLPLLKP---GGRFLAL-KGR---D---------------------------PEEEIAELPKALGGKV 164 (187)
T ss_pred -c--CHHHHHHHHHHhcCC---CeEEEEE-eCC---C---------------------------hHHHHHHHHHhcCceE
Confidence 2 235789999999999 9999988 321 0 1344567777779987
Q ss_pred eEEEec--C---CceEEEEEEc
Q 044482 327 IKVICR--S---YCYWVIEFYK 343 (345)
Q Consensus 327 ~~~~~~--~---~~~~vi~~~k 343 (345)
.++... + +...+...+|
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~ 186 (187)
T PRK00107 165 EEVIELTLPGLDGERHLVIIRK 186 (187)
T ss_pred eeeEEEecCCCCCcEEEEEEec
Confidence 766443 3 3445555555
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-10 Score=99.16 Aligned_cols=87 Identities=17% Similarity=0.087 Sum_probs=70.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
..+|||||||+|.++..++..+|+.+++++|. +.+++.++ +++++.+|+.+ +.... |+|++.. +|++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~-~~~~ 121 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA-LASL 121 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh-hhCH
Confidence 57999999999999999999999999999999 66665443 68999999877 22223 9998876 5443
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+++.+++.|+| ||++++.
T Consensus 122 -----~~~~~~~~~~Lkp---gG~lvi~ 141 (181)
T TIGR00138 122 -----NVLLELTLNLLKV---GGYFLAY 141 (181)
T ss_pred -----HHHHHHHHHhcCC---CCEEEEE
Confidence 3578888999999 9998887
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.2e-11 Score=107.95 Aligned_cols=137 Identities=17% Similarity=0.098 Sum_probs=100.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------CceEEeccCCcCCCCCCEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------CVEHVEGDMFVNVPSGQAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~~~p~~D~i~~~~vl 244 (345)
.+|||||||+|.++..|++.. .+++++|+ +.+++.|+ |+++...|.....+.-|+|+++-++
T Consensus 91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHHHH
Confidence 679999999999999999885 67999999 88888776 4777777766544446999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh-hhccchhhhhhcCC-----CccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN-ILTLDIVMYDLFPQ-----AKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~-~~~~d~~~~~~~~~-----~~~rt~~e~~~l 318 (345)
+|..|. ..+++.+.+.|+| +|+++|. +....-. .+. ...++-+.+-+.|- .+..+.++...+
T Consensus 169 eHV~dp--~~~l~~l~~~lkP---~G~lfit-tinrt~l------S~~~~i~~~E~vl~ivp~Gth~~ekfi~p~e~~~~ 236 (282)
T KOG1270|consen 169 EHVKDP--QEFLNCLSALLKP---NGRLFIT-TINRTIL------SFAGTIFLAEIVLRIVPKGTHTWEKFINPEELTSI 236 (282)
T ss_pred HHHhCH--HHHHHHHHHHhCC---CCceEee-ehhhhHH------HhhccccHHHHHHHhcCCCCcCHHHcCCHHHHHHH
Confidence 999888 4899999999999 9999999 4422111 011 11111112211122 245689999999
Q ss_pred HHHCCCCceEEEe
Q 044482 319 AMAAGFGTIKVIC 331 (345)
Q Consensus 319 l~~aGf~~~~~~~ 331 (345)
++.+|+.+..+..
T Consensus 237 l~~~~~~v~~v~G 249 (282)
T KOG1270|consen 237 LNANGAQVNDVVG 249 (282)
T ss_pred HHhcCcchhhhhc
Confidence 9999998877643
|
|
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1e-10 Score=104.09 Aligned_cols=140 Identities=13% Similarity=0.054 Sum_probs=95.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C-CC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N-VP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~-~p-~~-D~i~~~~vlh 245 (345)
...+|||||||+|.++..+++. ..+++++|. +.+++.++ ++++..+|+.+ + .+ .. |+|++.++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~ 125 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLE 125 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhh
Confidence 4578999999999999998875 467999998 66666554 46777777765 2 22 23 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC-----CCccCCHHHHHHHHH
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP-----QAKGRTAGEFKALAM 320 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~-----~~~~rt~~e~~~ll~ 320 (345)
+.++. ..+|+++.+.|+| ||++++. ..-.. .... .......-......+ .....+.++|.++++
T Consensus 126 ~~~~~--~~~l~~~~~~L~~---gG~l~v~-~~~~~----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 194 (233)
T PRK05134 126 HVPDP--ASFVRACAKLVKP---GGLVFFS-TLNRN----LKSY-LLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLR 194 (233)
T ss_pred ccCCH--HHHHHHHHHHcCC---CcEEEEE-ecCCC----hHHH-HHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHH
Confidence 98876 4789999999999 9998887 54211 1000 000000000000000 123458899999999
Q ss_pred HCCCCceEEEe
Q 044482 321 AAGFGTIKVIC 331 (345)
Q Consensus 321 ~aGf~~~~~~~ 331 (345)
++||++++...
T Consensus 195 ~~Gf~~v~~~~ 205 (233)
T PRK05134 195 QAGLEVQDITG 205 (233)
T ss_pred HCCCeEeeeee
Confidence 99999987753
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=100.64 Aligned_cols=139 Identities=14% Similarity=0.159 Sum_probs=93.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc---CCCCC--CEEEeccccccCChh
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~ 250 (345)
...+|||||||+|.++..+++.. ..+++++|+ +++++.++ +++++.+|+.+ +++++ |+|++++++||+++.
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~l~~~~d~ 91 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVARGVNVIQGDLDEGLEAFPDKSFDYVILSQTLQATRNP 91 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHHcCCeEEEEEhhhcccccCCCCcCEEEEhhHhHcCcCH
Confidence 45689999999999999888663 567899998 77777765 78999999865 24433 999999999999876
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhc----------cchhhhhhcCCCccCCHHHHHHHHH
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILT----------LDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~----------~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
. .+|+++.+.+++ +++. - +.... ........ +....... +..+..+.+++.++++
T Consensus 92 ~--~~l~e~~r~~~~------~ii~-~---p~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~ll~ 156 (194)
T TIGR02081 92 E--EILDEMLRVGRH------AIVS-F---PNFGY--WRVRWSILTKGRMPVTGELPYDWYNT-PNIHFCTIADFEDLCG 156 (194)
T ss_pred H--HHHHHHHHhCCe------EEEE-c---CChhH--HHHHHHHHhCCccccCCCCCccccCC-CCcccCcHHHHHHHHH
Confidence 4 678888876554 3333 1 11000 00000000 00000001 1234678999999999
Q ss_pred HCCCCceEEEecC
Q 044482 321 AAGFGTIKVICRS 333 (345)
Q Consensus 321 ~aGf~~~~~~~~~ 333 (345)
++||++++....+
T Consensus 157 ~~Gf~v~~~~~~~ 169 (194)
T TIGR02081 157 ELNLRILDRAAFD 169 (194)
T ss_pred HCCCEEEEEEEec
Confidence 9999999876664
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.8e-10 Score=98.09 Aligned_cols=128 Identities=13% Similarity=0.121 Sum_probs=94.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------------C--CceEEeccCCcCCC--
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------------P--CVEHVEGDMFVNVP-- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------------~--ri~~~~gd~~~~~p-- 233 (345)
....+|||+|||.|..+..|+++ +.+++++|+ |..++.+ + +++++.+|+++..+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~ 110 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAAD 110 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCccc
Confidence 45579999999999999999976 668999999 6656642 1 58899999998322
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|+-+.++|+++.+...+.++++.++|+| ||++++. ....++.... . -....+
T Consensus 111 ~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkp---gG~~ll~-~~~~~~~~~~-----------------g-pp~~~~ 168 (213)
T TIGR03840 111 LGPVDAVYDRAALIALPEEMRQRYAAHLLALLPP---GARQLLI-TLDYDQSEMA-----------------G-PPFSVS 168 (213)
T ss_pred CCCcCEEEechhhccCCHHHHHHHHHHHHHHcCC---CCeEEEE-EEEcCCCCCC-----------------C-cCCCCC
Confidence 22 999999999999999999999999999999 9987776 4433221100 0 011356
Q ss_pred HHHHHHHHHHCCCCceEEE
Q 044482 312 AGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~ 330 (345)
.+|++++++. +|.+..+.
T Consensus 169 ~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 169 PAEVEALYGG-HYEIELLE 186 (213)
T ss_pred HHHHHHHhcC-CceEEEEe
Confidence 8899998864 45555443
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=101.28 Aligned_cols=140 Identities=14% Similarity=0.045 Sum_probs=96.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC--CC-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP--SG-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p--~~-D~i~~~~vl 244 (345)
...+|||+|||+|.++..+++..+ +++++|+ +.+++.++ ++++..+|+.+ +.+ .. |+|++.+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l 122 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA--NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVL 122 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC--eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHH
Confidence 357899999999999999988654 5899998 66766554 37778888765 322 23 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhcC-----CCccCCHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLFP-----QAKGRTAGEFKAL 318 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~-----~~~~rt~~e~~~l 318 (345)
|+..+.+ .+|+++++.|+| ||.+++. +.-.+.. . . .....+.. .....+ .....+..++.++
T Consensus 123 ~~~~~~~--~~l~~~~~~L~~---gG~l~i~-~~~~~~~--~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (224)
T TIGR01983 123 EHVPDPQ--AFIRACAQLLKP---GGILFFS-TINRTPK--S-Y---LLAIVGAEYILRIVPKGTHDWEKFIKPSELTSW 190 (224)
T ss_pred HhCCCHH--HHHHHHHHhcCC---CcEEEEE-ecCCCch--H-H---HHHHHhhhhhhhcCCCCcCChhhcCCHHHHHHH
Confidence 9998774 789999999999 9998887 5421100 0 0 00000000 000000 1123478899999
Q ss_pred HHHCCCCceEEEec
Q 044482 319 AMAAGFGTIKVICR 332 (345)
Q Consensus 319 l~~aGf~~~~~~~~ 332 (345)
++++||+++++...
T Consensus 191 l~~~G~~i~~~~~~ 204 (224)
T TIGR01983 191 LESAGLRVKDVKGL 204 (224)
T ss_pred HHHcCCeeeeeeeE
Confidence 99999999887643
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.7e-10 Score=91.80 Aligned_cols=98 Identities=17% Similarity=0.131 Sum_probs=76.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~~ 235 (345)
.+++.+. .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|+... .++.
T Consensus 10 ~~~~~~~-~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (124)
T TIGR02469 10 LTLSKLR-LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPE 88 (124)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCC
Confidence 3455555 55567999999999999999999999999999999 67776554 688888887642 2233
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++....+ ...++++++++.|+| ||++++.
T Consensus 89 ~D~v~~~~~~~-----~~~~~l~~~~~~Lk~---gG~li~~ 121 (124)
T TIGR02469 89 PDRVFIGGSGG-----LLQEILEAIWRRLRP---GGRIVLN 121 (124)
T ss_pred CCEEEECCcch-----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 9999876543 335899999999999 9998875
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.6e-10 Score=100.82 Aligned_cols=119 Identities=20% Similarity=0.257 Sum_probs=91.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC--CEEEeccc----
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG--QAIFTKSV---- 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~--D~i~~~~v---- 243 (345)
..+|||+|||+|.++..+++.+|+.+++++|. +.+++.++ +++++.+|++++++.+ |+|+++--
T Consensus 88 ~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~~~ 167 (251)
T TIGR03534 88 PLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYIPE 167 (251)
T ss_pred CCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCCch
Confidence 45899999999999999999999999999998 77777665 5899999998866533 99988432
Q ss_pred --cccCChhH------------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 244 --LLNWSDEQ------------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 244 --lh~~~d~~------------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
+|.+..+. ...+++++.+.|+| ||++++. -. .
T Consensus 168 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~---gG~~~~~-~~------------------------~ 219 (251)
T TIGR03534 168 ADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKP---GGWLLLE-IG------------------------Y 219 (251)
T ss_pred hhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhccc---CCEEEEE-EC------------------------c
Confidence 22232221 23789999999999 9988776 10 0
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...++++++++++||+.+++...
T Consensus 220 ------~~~~~~~~~l~~~gf~~v~~~~d 242 (251)
T TIGR03534 220 ------DQGEAVRALFEAAGFADVETRKD 242 (251)
T ss_pred ------cHHHHHHHHHHhCCCCceEEEeC
Confidence 12466889999999998887654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-09 Score=98.89 Aligned_cols=139 Identities=12% Similarity=0.017 Sum_probs=95.7
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hh----HhhhCC---CceEEeccCCcCC----C-CC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PY----VIKNAP---CVEHVEGDMFVNV----P-SG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~----~i~~a~---ri~~~~gd~~~~~----p-~~-D~i~~~ 241 (345)
+....+|||+|||+|.++..+++.. |.-+++.+|+ +. +++.++ +|.++.+|+..+. + +. |+|++.
T Consensus 130 IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 130 IKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQKYRMLVPMVDVIFAD 209 (293)
T ss_pred cCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChhhhhcccCCCCEEEEe
Confidence 5667899999999999999999986 4568999998 43 556654 7999999986542 2 23 999887
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..++...++.++++.||| ||+++|. ......+..+ ...++-.+|. ++|++
T Consensus 210 va----~pdq~~il~~na~r~LKp---GG~~vI~-ika~~id~g~-------------------~pe~~f~~ev-~~L~~ 261 (293)
T PTZ00146 210 VA----QPDQARIVALNAQYFLKN---GGHFIIS-IKANCIDSTA-------------------KPEVVFASEV-QKLKK 261 (293)
T ss_pred CC----CcchHHHHHHHHHHhccC---CCEEEEE-EeccccccCC-------------------CHHHHHHHHH-HHHHH
Confidence 64 123445667789999999 9999985 2211111110 0011112444 88999
Q ss_pred CCCCceEEEecCC---ceEEEEEEc
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
+||+.++...+.. .+.++.++.
T Consensus 262 ~GF~~~e~v~L~Py~~~h~~v~~~~ 286 (293)
T PTZ00146 262 EGLKPKEQLTLEPFERDHAVVIGVY 286 (293)
T ss_pred cCCceEEEEecCCccCCcEEEEEEE
Confidence 9999999888853 356666553
|
|
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.9e-10 Score=95.02 Aligned_cols=142 Identities=17% Similarity=0.209 Sum_probs=98.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh-HhhhCC-CceEEeccCCc---CCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY-VIKNAP-CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~-~i~~a~-ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d 249 (345)
++..+|||+|||.|.++..|.+. .++++.++|+ ++ +.+..+ .++++++|+.+ .+|+. |.|+++..|.+...
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~rGv~Viq~Dld~gL~~f~d~sFD~VIlsqtLQ~~~~ 90 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVARGVSVIQGDLDEGLADFPDQSFDYVILSQTLQAVRR 90 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHcCCCEEECCHHHhHhhCCCCCccEEehHhHHHhHhH
Confidence 35689999999999999888875 5888999988 44 444433 89999999987 35643 99999999999987
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh---------hhhcCCCccCCHHHHHHHHH
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM---------YDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~---------~~~~~~~~~rt~~e~~~ll~ 320 (345)
++ ++|+++.|+ |.+.+|. .|+-. .+..+....+.-.| +--+||-+..|..+++++.+
T Consensus 91 P~--~vL~EmlRV------gr~~IVs----FPNFg--~W~~R~~l~~~GrmPvt~~lPy~WYdTPNih~~Ti~DFe~lc~ 156 (193)
T PF07021_consen 91 PD--EVLEEMLRV------GRRAIVS----FPNFG--HWRNRLQLLLRGRMPVTKALPYEWYDTPNIHLCTIKDFEDLCR 156 (193)
T ss_pred HH--HHHHHHHHh------cCeEEEE----ecChH--HHHHHHHHHhcCCCCCCCCCCCcccCCCCcccccHHHHHHHHH
Confidence 75 779988777 5455555 12110 01001000000000 11134556779999999999
Q ss_pred HCCCCceEEEecCC
Q 044482 321 AAGFGTIKVICRSY 334 (345)
Q Consensus 321 ~aGf~~~~~~~~~~ 334 (345)
+.|+++.+...+..
T Consensus 157 ~~~i~I~~~~~~~~ 170 (193)
T PF07021_consen 157 ELGIRIEERVFLDG 170 (193)
T ss_pred HCCCEEEEEEEEcC
Confidence 99999998877754
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=97.90 Aligned_cols=102 Identities=19% Similarity=0.237 Sum_probs=80.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~-D~ 237 (345)
+++.++ .....+|||+|||+|..+..+++++|+.+++.+|. +..++.++ .++++..|.++..+ .. |+
T Consensus 23 L~~~l~-~~~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~ 101 (170)
T PF05175_consen 23 LLDNLP-KHKGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDL 101 (170)
T ss_dssp HHHHHH-HHTTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEE
T ss_pred HHHHHh-hccCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeE
Confidence 344444 33557899999999999999999999999999999 77777665 38899999999776 34 99
Q ss_pred EEeccccccCCh---hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSD---EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d---~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++--+|.-.+ +-..++++++.+.|+| ||+++++
T Consensus 102 Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk~---~G~l~lv 139 (170)
T PF05175_consen 102 IVSNPPFHAGGDDGLDLLRDFIEQARRYLKP---GGRLFLV 139 (170)
T ss_dssp EEE---SBTTSHCHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEccchhcccccchhhHHHHHHHHHHhccC---CCEEEEE
Confidence 999987776554 3457899999999999 9999776
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7e-10 Score=93.43 Aligned_cols=170 Identities=16% Similarity=0.052 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------Cce
Q 044482 153 NLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVE 222 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~ 222 (345)
..|++-|+.+.+.....+-...- -+.-..||+||||+|..-... .--|..+++++|. |.|-+.+. .+.
T Consensus 51 ~~yne~~~~ykrelFs~i~~~~g-k~~K~~vLEvgcGtG~Nfkfy-~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~ 128 (252)
T KOG4300|consen 51 SIYNEIADSYKRELFSGIYYFLG-KSGKGDVLEVGCGTGANFKFY-PWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVE 128 (252)
T ss_pred HHHHHHHHHHHHHHHhhhHHHhc-ccCccceEEecccCCCCcccc-cCCCCceEEEeCCcHHHHHHHHHHHhhccCcceE
Confidence 45666666665443333332221 233457899999999876331 1225678999998 66644332 566
Q ss_pred -EEeccCCc-C-CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc
Q 044482 223 -HVEGDMFV-N-VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD 297 (345)
Q Consensus 223 -~~~gd~~~-~-~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d 297 (345)
|+.++..+ + ++++ |+|++..+|.-..|. ++.|+++++.|+| ||+++.+ |.+..+...-.. -.+...+
T Consensus 129 ~fvva~ge~l~~l~d~s~DtVV~TlvLCSve~~--~k~L~e~~rlLRp---gG~iifi-EHva~~y~~~n~--i~q~v~e 200 (252)
T KOG4300|consen 129 RFVVADGENLPQLADGSYDTVVCTLVLCSVEDP--VKQLNEVRRLLRP---GGRIIFI-EHVAGEYGFWNR--ILQQVAE 200 (252)
T ss_pred EEEeechhcCcccccCCeeeEEEEEEEeccCCH--HHHHHHHHHhcCC---CcEEEEE-ecccccchHHHH--HHHHHhc
Confidence 88888776 4 4555 999999999655554 7999999999999 9999999 998776532110 0111122
Q ss_pred hhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 298 IVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 298 ~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
-..-..+ .|-..|.+-| +.|++|-|+..+......
T Consensus 201 p~~~~~~-dGC~ltrd~~-e~Leda~f~~~~~kr~~~ 235 (252)
T KOG4300|consen 201 PLWHLES-DGCVLTRDTG-ELLEDAEFSIDSCKRFNF 235 (252)
T ss_pred hhhheec-cceEEehhHH-HHhhhcccccchhhcccC
Confidence 1111122 4556666655 678899999887766653
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.2e-10 Score=98.31 Aligned_cols=132 Identities=16% Similarity=0.173 Sum_probs=94.5
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCCCC--CEEEecc
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVPSG--QAIFTKS 242 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p~~--D~i~~~~ 242 (345)
.++ -....+++|+|||.|.++..|+.++. +.+++|. +..++.|+ +|+++.+|+-+..|.+ |+|+++-
T Consensus 38 aLp-~~ry~~alEvGCs~G~lT~~LA~rCd--~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV~SE 114 (201)
T PF05401_consen 38 ALP-RRRYRRALEVGCSIGVLTERLAPRCD--RLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIVLSE 114 (201)
T ss_dssp HHT-TSSEEEEEEE--TTSHHHHHHGGGEE--EEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEEEES
T ss_pred hcC-ccccceeEecCCCccHHHHHHHHhhC--ceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEEEeh
Confidence 455 45667899999999999999999973 6899998 77788776 7999999998877755 9999999
Q ss_pred ccccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 243 VLLNWSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 243 vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
|+|++++ ++...+++++.++|+| ||.+++. ..- |-.. .. -|.....+.+.++|.+
T Consensus 115 VlYYL~~~~~L~~~l~~l~~~L~p---gG~LV~g-~~r-----------------d~~c--~~-wgh~~ga~tv~~~~~~ 170 (201)
T PF05401_consen 115 VLYYLDDAEDLRAALDRLVAALAP---GGHLVFG-HAR-----------------DANC--RR-WGHAAGAETVLEMLQE 170 (201)
T ss_dssp -GGGSSSHHHHHHHHHHHHHTEEE---EEEEEEE-EE------------------HHHH--HH-TT-S--HHHHHHHHHH
T ss_pred HhHcCCCHHHHHHHHHHHHHHhCC---CCEEEEE-Eec-----------------CCcc--cc-cCcccchHHHHHHHHH
Confidence 9999986 6788899999999999 9999998 431 1000 11 2344467778888888
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
. |..++...+
T Consensus 171 ~-~~~~~~~~~ 180 (201)
T PF05401_consen 171 H-LTEVERVEC 180 (201)
T ss_dssp H-SEEEEEEEE
T ss_pred H-hhheeEEEE
Confidence 7 555554444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-10 Score=100.62 Aligned_cols=94 Identities=15% Similarity=0.095 Sum_probs=74.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccC-Cc-C--CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDM-FV-N--VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~-~~-~--~p~~--D~i~~~~ 242 (345)
+..+|||||||+|.++..+++.+|+.+++++|. +++++.++ +++++.+|+ .. + ++++ |+|++..
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 457899999999999999999999999999999 77877554 689999998 33 3 4443 9998865
Q ss_pred ccccCC------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWS------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+... ......+|+++++.|+| ||.+++.
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~Lkp---gG~l~i~ 155 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKP---GGEIHFA 155 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCC---CCEEEEE
Confidence 442211 11235789999999999 9999998
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.4e-09 Score=96.38 Aligned_cols=104 Identities=14% Similarity=0.136 Sum_probs=85.5
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D 236 (345)
+-+++.++ .....+|+|+|||.|.++..+++.+|+.+++.+|. ...++.++ +..+...|.+++.... |
T Consensus 148 ~lLl~~l~-~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~kfd 226 (300)
T COG2813 148 RLLLETLP-PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGKFD 226 (300)
T ss_pred HHHHHhCC-ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccccc
Confidence 45678887 55555999999999999999999999999999999 45566666 2357888988876654 9
Q ss_pred EEEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+++=-+|. ..+.-..++++..++.|++ ||.|.|+
T Consensus 227 ~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~---gGeL~iV 265 (300)
T COG2813 227 LIISNPPFHAGKAVVHSLAQEIIAAAARHLKP---GGELWIV 265 (300)
T ss_pred EEEeCCCccCCcchhHHHHHHHHHHHHHhhcc---CCEEEEE
Confidence 9999988874 3444556899999999999 9999999
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.4e-10 Score=97.39 Aligned_cols=105 Identities=16% Similarity=0.181 Sum_probs=81.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
..+++.++ .-...++||+|||.|..+..|+++ +..++.+|. +..++.++ .|+....|+.+ .++.. |
T Consensus 20 s~v~~a~~-~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD 96 (192)
T PF03848_consen 20 SEVLEAVP-LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYD 96 (192)
T ss_dssp HHHHHHCT-TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEE
T ss_pred HHHHHHHh-hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcC
Confidence 35666666 556789999999999999999998 567999998 44455433 68888999887 55555 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+|++..|+++++.+....+++++.++++| ||.+++. ..+
T Consensus 97 ~I~st~v~~fL~~~~~~~i~~~m~~~~~p---GG~~li~-~~~ 135 (192)
T PF03848_consen 97 FIVSTVVFMFLQRELRPQIIENMKAATKP---GGYNLIV-TFM 135 (192)
T ss_dssp EEEEESSGGGS-GGGHHHHHHHHHHTEEE---EEEEEEE-EEB
T ss_pred EEEEEEEeccCCHHHHHHHHHHHHhhcCC---cEEEEEE-Eec
Confidence 99999999999999999999999999999 9988887 554
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.7e-09 Score=94.06 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=108.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC---------Cc-eEEeccCCcC--CC---CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP---------CV-EHVEGDMFVN--VP---SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~---------ri-~~~~gd~~~~--~p---~~-D~i~ 239 (345)
..-+||||.||+|.+....++.+|. .++.+.|. |.-++..+ .+ +|..+|.|+. +. .. ++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 4578999999999999999999998 78999998 65566554 44 9999999983 22 23 9999
Q ss_pred eccccccCChhHHH-HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC-----ccCCHH
Q 044482 240 TKSVLLNWSDEQCL-KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA-----KGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~-----~~rt~~ 313 (345)
.+.+...|+|.+.+ +.|+.+++++.| ||.++-. -.-..+.. .++.. .++.+.+| +.||..
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~p---gG~lIyT-gQPwHPQl---------e~IAr-~LtsHr~g~~WvMRrRsq~ 280 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEP---GGYLIYT-GQPWHPQL---------EMIAR-VLTSHRDGKAWVMRRRSQA 280 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCC---CcEEEEc-CCCCCcch---------HHHHH-HHhcccCCCceEEEecCHH
Confidence 99999999997744 479999999999 9977776 22111110 01111 11111133 368999
Q ss_pred HHHHHHHHCCCCceEEEecC-CceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICRS-YCYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k 343 (345)
|..+|+++|||+.++..--. +-.+|-.|+|
T Consensus 281 EmD~Lv~~aGF~K~~q~ID~~GIFTVSlA~r 311 (311)
T PF12147_consen 281 EMDQLVEAAGFEKIDQRIDEWGIFTVSLARR 311 (311)
T ss_pred HHHHHHHHcCCchhhheeccCCceEEEeecC
Confidence 99999999999877654333 4456666653
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.4e-10 Score=96.41 Aligned_cols=143 Identities=20% Similarity=0.200 Sum_probs=106.3
Q ss_pred cceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC--------CceEEeccCCc-C----CCCC--CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N----VPSG--QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~----~p~~--D~i~~~~ 242 (345)
.+||+||||.|.+.-.+++.+|+ +++..+|. |..++..+ |+.-...|+.. . ...+ |++.+..
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IF 152 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIF 152 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEEE
Confidence 48999999999999999999988 99999998 77766554 66666666655 2 2234 9999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC--ccCCHHHHHHHHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA--KGRTAGEFKALAM 320 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~--~~rt~~e~~~ll~ 320 (345)
+|-..+++.....+.++++.||| ||.|+.. |.-..+-..-.. .....++-...+..+|. ..++.+++.+|++
T Consensus 153 vLSAi~pek~~~a~~nl~~llKP---GG~llfr-DYg~~DlaqlRF--~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~ 226 (264)
T KOG2361|consen 153 VLSAIHPEKMQSVIKNLRTLLKP---GGSLLFR-DYGRYDLAQLRF--KKGQCISENFYVRGDGTRAYFFTEEELDELFT 226 (264)
T ss_pred EEeccChHHHHHHHHHHHHHhCC---CcEEEEe-ecccchHHHHhc--cCCceeecceEEccCCceeeeccHHHHHHHHH
Confidence 99999999999999999999999 9999999 875543211000 01122333333332222 2469999999999
Q ss_pred HCCCCceEE
Q 044482 321 AAGFGTIKV 329 (345)
Q Consensus 321 ~aGf~~~~~ 329 (345)
+|||..++.
T Consensus 227 ~agf~~~~~ 235 (264)
T KOG2361|consen 227 KAGFEEVQL 235 (264)
T ss_pred hcccchhcc
Confidence 999987654
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=94.05 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=94.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------------------CCceEEeccCCcCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------------------PCVEHVEGDMFVNVP- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------------------~ri~~~~gd~~~~~p- 233 (345)
.....+|||+|||.|..+..|+++ +.+++++|+ |..++.+ .+|++..+|+++..+
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~ 112 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAA 112 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcc
Confidence 344579999999999999999975 678999999 5555532 168889999998433
Q ss_pred --CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC-CCchhhhhhhccchhhhhhcCCCcc
Q 044482 234 --SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP-EFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 234 --~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
.. |+|+-+.++|+++.+...+.++++.++|+| ||+++++ ....++.. ..| ...
T Consensus 113 ~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p---gG~~~l~-~~~~~~~~~~gP-------------------p~~ 169 (218)
T PRK13255 113 DLADVDAVYDRAALIALPEEMRERYVQQLAALLPA---GCRGLLV-TLDYPQEELAGP-------------------PFS 169 (218)
T ss_pred cCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC---CCeEEEE-EEEeCCccCCCC-------------------CCC
Confidence 12 999999999999999999999999999999 9976655 33332221 111 113
Q ss_pred CCHHHHHHHHHHCCCCceEEEe
Q 044482 310 RTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.+.+|++++++. +|.+.....
T Consensus 170 ~~~~el~~~~~~-~~~i~~~~~ 190 (218)
T PRK13255 170 VSDEEVEALYAG-CFEIELLER 190 (218)
T ss_pred CCHHHHHHHhcC-CceEEEeee
Confidence 578999999964 266555443
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-09 Score=91.08 Aligned_cols=121 Identities=20% Similarity=0.228 Sum_probs=90.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------C-ceEEeccCCcCCCC-C-CEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------C-VEHVEGDMFVNVPS-G-QAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------r-i~~~~gd~~~~~p~-~-D~i~~~~v 243 (345)
.+..+|||+|||+|.++..++++ ..+++++|+ |.+++.++ + +.++.+|+.+++++ . |+|+++..
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p 99 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPP 99 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCC
Confidence 34568999999999999999988 578999999 77877663 2 88999999886664 3 99988654
Q ss_pred cccCC-------------------hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc
Q 044482 244 LLNWS-------------------DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF 304 (345)
Q Consensus 244 lh~~~-------------------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~ 304 (345)
+.... ......+++++.+.|+| ||++++. .. . .
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~---gG~~~~~-~~---~--------------------~- 151 (188)
T PRK14968 100 YLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKP---GGRILLL-QS---S--------------------L- 151 (188)
T ss_pred cCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCC---CeEEEEE-Ec---c--------------------c-
Confidence 43211 12245689999999999 9988887 21 0 0
Q ss_pred CCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 305 PQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 305 ~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
...+++.++++++||++..+....
T Consensus 152 -----~~~~~l~~~~~~~g~~~~~~~~~~ 175 (188)
T PRK14968 152 -----TGEDEVLEYLEKLGFEAEVVAEEK 175 (188)
T ss_pred -----CCHHHHHHHHHHCCCeeeeeeecc
Confidence 123567899999999988775543
|
|
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=3.2e-09 Score=96.75 Aligned_cols=132 Identities=20% Similarity=0.221 Sum_probs=94.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEeccc-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTKSV- 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~~v- 243 (345)
.....+|||+|||+|..+..+++..|..+++++|+ +.+++.++ +++++.+|++++.+. . |+|+++--
T Consensus 106 ~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 106 LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34557899999999999999999999999999998 66666544 689999999886653 3 99987422
Q ss_pred -----cccCCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh
Q 044482 244 -----LLNWSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM 300 (345)
Q Consensus 244 -----lh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~ 300 (345)
++...+ +...++++++.+.|+| ||++++. - . .
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~---gG~l~~e-~-----g-~--------------- 240 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKP---GGWLLLE-I-----G-Y--------------- 240 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhccc---CCEEEEE-E-----C-c---------------
Confidence 111111 1235789999999999 9988776 1 0 0
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEe-cCCceEEEEEE
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVIC-RSYCYWVIEFY 342 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~-~~~~~~vi~~~ 342 (345)
...+++++++++.||+.+++.. ..+...++.++
T Consensus 241 ---------~~~~~~~~~l~~~gf~~v~~~~d~~~~~r~~~~~ 274 (275)
T PRK09328 241 ---------DQGEAVRALLAAAGFADVETRKDLAGRDRVVLGR 274 (275)
T ss_pred ---------hHHHHHHHHHHhCCCceeEEecCCCCCceEEEEE
Confidence 0135688999999998777643 33444455444
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.7e-10 Score=98.45 Aligned_cols=93 Identities=15% Similarity=0.237 Sum_probs=73.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C---CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N---VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~---~p~~--D~i~~~~ 242 (345)
...++||||||+|.++..+++++|+..++++|+ +.+++.++ +++++.+|+.+ + ++.+ |.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 346899999999999999999999999999999 77777654 68999999975 2 3443 7777664
Q ss_pred ccccCChhH-------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQ-------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.+ |+... ...++++++++|+| ||.|++.
T Consensus 96 pdp-w~k~~h~~~r~~~~~~l~~~~r~Lkp---gG~l~~~ 131 (194)
T TIGR00091 96 PDP-WPKKRHNKRRITQPHFLKEYANVLKK---GGVIHFK 131 (194)
T ss_pred CCc-CCCCCccccccCCHHHHHHHHHHhCC---CCEEEEE
Confidence 432 22211 14689999999999 9999887
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.6e-10 Score=93.97 Aligned_cols=121 Identities=21% Similarity=0.233 Sum_probs=83.3
Q ss_pred EEeeh-hhHhhhCC------------CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCc
Q 044482 207 INFDL-PYVIKNAP------------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHG 270 (345)
Q Consensus 207 ~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG 270 (345)
+++|. ++|++.|+ +++++.+|+.+ +++++ |+|++..++|+++|. .++|++++++||| ||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~d~--~~~l~ei~rvLkp---GG 75 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVVDR--LRAMKEMYRVLKP---GS 75 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCCCH--HHHHHHHHHHcCc---Ce
Confidence 36787 77877652 48999999987 77654 999999999999876 5889999999999 99
Q ss_pred EEEEEeccCCCCCCCCchhhhhhhccchhhh---hhcCC-----------CccCCHHHHHHHHHHCCCCceEEEecCCc
Q 044482 271 RTQLRSKRGLPESPEFSSINRNILTLDIVMY---DLFPQ-----------AKGRTAGEFKALAMAAGFGTIKVICRSYC 335 (345)
Q Consensus 271 ~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~---~~~~~-----------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~ 335 (345)
+++|. |...+++.-... ........... ..... ....+.+++.++|+++||+.++......+
T Consensus 76 ~l~i~-d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~~~~~g 151 (160)
T PLN02232 76 RVSIL-DFNKSNQSVTTF--MQGWMIDNVVVPVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHYEISGG 151 (160)
T ss_pred EEEEE-ECCCCChHHHHH--HHHHHccchHhhhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEEECcch
Confidence 99999 887544311100 00000000000 00000 12358999999999999999988777643
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.02 E-value=5e-09 Score=95.85 Aligned_cols=94 Identities=18% Similarity=0.312 Sum_probs=73.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc---
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS--- 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~--- 242 (345)
...+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|++++++. . |+|+++-
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~ 200 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYV 200 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 78877665 588999999886664 3 9999851
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 ----------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 ----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+. +...++++++.+.|+| ||++++-
T Consensus 201 ~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~---gG~l~~e 250 (284)
T TIGR03533 201 DAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNE---NGVLVVE 250 (284)
T ss_pred CccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1122111 1236789999999999 9987755
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-09 Score=93.11 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=75.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~ 234 (345)
..+++.++ .....+|||||||+|..+..+++..+ ..+++++|. +++++.++ +++++.+|+.+.++ .
T Consensus 62 ~~~~~~l~-~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~ 140 (205)
T PRK13944 62 AMMCELIE-PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKH 140 (205)
T ss_pred HHHHHhcC-CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccC
Confidence 34556555 55668999999999999999998864 568999999 77776554 47899999987544 2
Q ss_pred -C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++...+++++ +++.+.|+| ||++++.
T Consensus 141 ~~fD~Ii~~~~~~~~~--------~~l~~~L~~---gG~lvi~ 172 (205)
T PRK13944 141 APFDAIIVTAAASTIP--------SALVRQLKD---GGVLVIP 172 (205)
T ss_pred CCccEEEEccCcchhh--------HHHHHhcCc---CcEEEEE
Confidence 3 9999998887665 356788999 9998776
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.7e-09 Score=100.31 Aligned_cols=102 Identities=18% Similarity=0.273 Sum_probs=77.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~ 235 (345)
.+++.+. -.....+||||||+|.++..+++++|+..++++|+ +.+++.+. ++.++.+|+.. .+|++
T Consensus 113 ~~~~~~~-~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~ 191 (390)
T PRK14121 113 NFLDFIS-KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSN 191 (390)
T ss_pred HHHHHhc-CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCC
Confidence 4555554 33456899999999999999999999999999998 66665543 78899999843 45654
Q ss_pred --CEEEeccccccCChhH-----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQ-----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~-----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++.... -|+... ...+|+.++++|+| ||.+.+.
T Consensus 192 s~D~I~lnFPd-PW~KkrHRRlv~~~fL~e~~RvLkp---GG~l~l~ 234 (390)
T PRK14121 192 SVEKIFVHFPV-PWDKKPHRRVISEDFLNEALRVLKP---GGTLELR 234 (390)
T ss_pred ceeEEEEeCCC-CccccchhhccHHHHHHHHHHHcCC---CcEEEEE
Confidence 888875433 233221 14789999999999 9999998
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=97.91 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCC---eEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQI---TGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~---~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 247 (345)
...+|||||||+|.++..+++..|.. +++++|+ +.+++.|+ ++++..+|..+ +++++ |+|+....
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~~~---- 160 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRIYA---- 160 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEecC----
Confidence 34679999999999999999988753 6899999 88888775 78899999887 77654 99986532
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. ..+++++++|+| ||+++++
T Consensus 161 -~----~~~~e~~rvLkp---gG~li~~ 180 (272)
T PRK11088 161 -P----CKAEELARVVKP---GGIVITV 180 (272)
T ss_pred -C----CCHHHHHhhccC---CCEEEEE
Confidence 1 236789999999 9999988
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.5e-08 Score=95.98 Aligned_cols=133 Identities=17% Similarity=0.152 Sum_probs=95.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCC-C-C-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVP-S-G-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p-~-~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++++|+.+++++|+ |.+++.++ +++++.+|+++ ..| . . |+|+++---.
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI 330 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKWDIIVSNPPYI 330 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCccEEEECCCCC
Confidence 346899999999999999999999999999999 88888776 68999999987 344 2 2 9999853211
Q ss_pred cC------------Ch-----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 246 NW------------SD-----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 246 ~~------------~d-----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
.- .+ +--.++++.+.+.|+| ||.+++. . ..
T Consensus 331 ~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~Lkp---gG~lilE--i--G~-------------------- 383 (423)
T PRK14966 331 ENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAE---GGFLLLE--H--GF-------------------- 383 (423)
T ss_pred CcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCC---CcEEEEE--E--Cc--------------------
Confidence 00 00 1123677778889999 8876544 1 00
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEEcCC
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFYKPK 345 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k~~ 345 (345)
...+++++++++.||+.+++..- .+..-++.+++.|
T Consensus 384 -------~Q~e~V~~ll~~~Gf~~v~v~kDl~G~dR~v~~~~~~ 420 (423)
T PRK14966 384 -------DQGAAVRGVLAENGFSGVETLPDLAGLDRVTLGKYMK 420 (423)
T ss_pred -------cHHHHHHHHHHHCCCcEEEEEEcCCCCcEEEEEEEhh
Confidence 01456788999999998776544 4556666676654
|
|
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.9e-09 Score=91.57 Aligned_cols=103 Identities=19% Similarity=0.145 Sum_probs=77.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p~-~-D 236 (345)
.+.+.+..+....+|||||||+|.++..++++. +..+++++|+.++... .+++++.+|+.++ ++. . |
T Consensus 41 ~~~~~~~~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~~~~-~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 41 EIQQSDKLFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPMDPI-VGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred HHHHHhccCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccccCC-CCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 344444424566799999999999999999986 4578999999554322 3799999999873 343 3 9
Q ss_pred EEEeccccccCChhH---------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ---------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++....|...+.. ...+|+.+++.|+| ||.+++.
T Consensus 120 ~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~Lkp---GG~~vi~ 164 (209)
T PRK11188 120 VVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAP---GGSFVVK 164 (209)
T ss_pred EEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 999876665443321 24689999999999 9999987
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.7e-09 Score=91.21 Aligned_cols=140 Identities=12% Similarity=0.119 Sum_probs=105.4
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CCCC-
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VPSG- 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p~~- 235 (345)
+..+.......+|||+|||.|..+..+++++++++++++++ +.+.+.|+ ||+++++|+.+. .+.+
T Consensus 36 L~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~ 115 (248)
T COG4123 36 LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFAS 115 (248)
T ss_pred HHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccc
Confidence 33333244578999999999999999999999999999999 67777665 899999999872 2222
Q ss_pred -CEEEeccccccCChh----------------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch
Q 044482 236 -QAIFTKSVLLNWSDE----------------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI 298 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~----------------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~ 298 (345)
|+|+|+=-.+.-.+. ....+++.+.+.||| ||++.++ ..+
T Consensus 116 fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~---~G~l~~V------~r~-------------- 172 (248)
T COG4123 116 FDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKP---GGRLAFV------HRP-------------- 172 (248)
T ss_pred cCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccC---CCEEEEE------ecH--------------
Confidence 899997655443332 235789999999999 9999888 110
Q ss_pred hhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC------ceEEEEEEcC
Q 044482 299 VMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY------CYWVIEFYKP 344 (345)
Q Consensus 299 ~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k~ 344 (345)
. ...|+.+++++.+|...++..+.+ ..-++++.|.
T Consensus 173 ----e-------rl~ei~~~l~~~~~~~k~i~~V~p~~~k~A~~vLv~~~k~ 213 (248)
T COG4123 173 ----E-------RLAEIIELLKSYNLEPKRIQFVYPKIGKAANRVLVEAIKG 213 (248)
T ss_pred ----H-------HHHHHHHHHHhcCCCceEEEEecCCCCCcceEEEEEEecC
Confidence 0 145788999999999988877742 3567787765
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.8e-09 Score=92.57 Aligned_cols=97 Identities=15% Similarity=0.219 Sum_probs=76.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~ 234 (345)
...+++.++ .....+|||||||+|.++..+++.. ++.+++++|. |++++.++ +++++.+|..+..+ .
T Consensus 65 ~~~~~~~l~-~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~ 143 (212)
T PRK13942 65 VAIMCELLD-LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEEN 143 (212)
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcC
Confidence 345666676 7778899999999999999998875 4578999998 88887665 68999999987443 3
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |+|++...+++.+ +.+.+.|+| ||++++.
T Consensus 144 ~~fD~I~~~~~~~~~~--------~~l~~~Lkp---gG~lvi~ 175 (212)
T PRK13942 144 APYDRIYVTAAGPDIP--------KPLIEQLKD---GGIMVIP 175 (212)
T ss_pred CCcCEEEECCCcccch--------HHHHHhhCC---CcEEEEE
Confidence 3 9999987765543 356678999 9998886
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=5.8e-09 Score=90.27 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=74.6
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCC-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPS-G 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~-~ 235 (345)
+++.++ .....+|||+|||+|.++..+++..|+.+++++|+ |.+++.++ +++++.+|+.+. +.. .
T Consensus 32 l~~~l~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~ 110 (196)
T PRK07402 32 LISQLR-LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQLAPAP 110 (196)
T ss_pred HHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhCCCCC
Confidence 455555 56678999999999999999999899999999999 88877655 588999988652 222 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.+++.. ......+++++++.|+| ||++++.
T Consensus 111 d~v~~~~------~~~~~~~l~~~~~~Lkp---gG~li~~ 141 (196)
T PRK07402 111 DRVCIEG------GRPIKEILQAVWQYLKP---GGRLVAT 141 (196)
T ss_pred CEEEEEC------CcCHHHHHHHHHHhcCC---CeEEEEE
Confidence 6655421 22346889999999999 9998888
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-08 Score=91.46 Aligned_cols=122 Identities=17% Similarity=0.067 Sum_probs=83.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEec-cCCc-CCC--CCCEEEeccccccCChhH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEG-DMFV-NVP--SGQAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~g-d~~~-~~p--~~D~i~~~~vlh~~~d~~ 251 (345)
....+|||||||+|.++..+++..+. +++++|+ |.+++.++ +++.-.. +... ... ..|+|+++.. .+.
T Consensus 118 ~~~~~VLDiGcGsG~l~i~~~~~g~~-~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~~fD~Vvani~-----~~~ 191 (250)
T PRK00517 118 LPGKTVLDVGCGSGILAIAAAKLGAK-KVLAVDIDPQAVEAARENAELNGVELNVYLPQGDLKADVIVANIL-----ANP 191 (250)
T ss_pred CCCCEEEEeCCcHHHHHHHHHHcCCC-eEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCCCcCEEEEcCc-----HHH
Confidence 35679999999999999887765443 6999999 88888776 2111000 1111 111 2388887532 233
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
...+++++.+.|+| ||++++. +.... ..+++.+.+++.||+++++..
T Consensus 192 ~~~l~~~~~~~Lkp---gG~lils-gi~~~-----------------------------~~~~v~~~l~~~Gf~~~~~~~ 238 (250)
T PRK00517 192 LLELAPDLARLLKP---GGRLILS-GILEE-----------------------------QADEVLEAYEEAGFTLDEVLE 238 (250)
T ss_pred HHHHHHHHHHhcCC---CcEEEEE-ECcHh-----------------------------hHHHHHHHHHHCCCEEEEEEE
Confidence 46789999999999 9999888 43211 145678999999999998877
Q ss_pred cCCceEE
Q 044482 332 RSYCYWV 338 (345)
Q Consensus 332 ~~~~~~v 338 (345)
......+
T Consensus 239 ~~~W~~~ 245 (250)
T PRK00517 239 RGEWVAL 245 (250)
T ss_pred eCCEEEE
Confidence 6554444
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.3e-08 Score=88.20 Aligned_cols=96 Identities=14% Similarity=0.150 Sum_probs=73.8
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~ 235 (345)
+..++ .....+|||+|||+|.++..+++.. |..+++++|. +.+++.++ +++++.+|+.+..+ ..
T Consensus 33 l~~l~-~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~ 111 (198)
T PRK00377 33 LSKLR-LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEK 111 (198)
T ss_pred HHHcC-CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCC
Confidence 34455 6677899999999999999998864 6679999999 88877554 57888899876222 23
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++.. ...+...+|+.+.+.|+| ||++++.
T Consensus 112 ~D~V~~~~-----~~~~~~~~l~~~~~~Lkp---gG~lv~~ 144 (198)
T PRK00377 112 FDRIFIGG-----GSEKLKEIISASWEIIKK---GGRIVID 144 (198)
T ss_pred CCEEEECC-----CcccHHHHHHHHHHHcCC---CcEEEEE
Confidence 9998853 223346789999999999 9998865
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.3e-09 Score=95.86 Aligned_cols=93 Identities=17% Similarity=0.222 Sum_probs=74.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p~~-D~i~~~~v 243 (345)
.+++|||||||+|.++..+++.+|+.+++++|+ |++++.|+ |++++.+|..+ ..+.. |+|++..
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~- 144 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG- 144 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC-
Confidence 457899999999999999999999999999999 99988765 68999999865 23334 9998753
Q ss_pred ccc--CChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLN--WSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~--~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++. .+... ...+++++++.|+| ||.+++.
T Consensus 145 ~~~~~~~~~l~t~efl~~~~~~L~p---gGvlvin 176 (262)
T PRK04457 145 FDGEGIIDALCTQPFFDDCRNALSS---DGIFVVN 176 (262)
T ss_pred CCCCCCccccCcHHHHHHHHHhcCC---CcEEEEE
Confidence 221 11111 25899999999999 9998886
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.92 E-value=8.7e-09 Score=90.53 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=75.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~- 234 (345)
..+++.++ .....+|||||||+|.++..+++..+ +.+++++|. |++++.|+ +++++.+|..+..+ .
T Consensus 67 ~~~~~~l~-~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLE-LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhC-CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccC
Confidence 45566666 66778999999999999999999865 467999998 88887665 68899999987433 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++....++. ...+.+.|+| ||++++.
T Consensus 146 ~fD~Ii~~~~~~~~--------~~~~~~~L~~---gG~lv~~ 176 (215)
T TIGR00080 146 PYDRIYVTAAGPKI--------PEALIDQLKE---GGILVMP 176 (215)
T ss_pred CCCEEEEcCCcccc--------cHHHHHhcCc---CcEEEEE
Confidence 3 999988765443 4457788999 9998876
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.7e-09 Score=96.98 Aligned_cols=92 Identities=18% Similarity=0.299 Sum_probs=73.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc-----
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS----- 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~----- 242 (345)
.+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|+++.+|. . |+|+++-
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 5899999999999999999999999999999 88887665 589999999886664 3 9999851
Q ss_pred --------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 --------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 --------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++.+. +-..++++++.+.|+| ||++++-
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~p---gG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTE---DGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1122221 2236889999999999 9987765
|
|
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=91.62 Aligned_cols=120 Identities=9% Similarity=0.090 Sum_probs=88.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCC-CC-CEEEeccccccCChhHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVP-SG-QAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p-~~-D~i~~~~vlh~~~d~~~ 252 (345)
..+|||+|||+|.++..++++.+..+++++|+ |.+++.++ +++++.+|+++... .. |+|+++--+++.+.++.
T Consensus 65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~l~~~d~ 144 (279)
T PHA03411 65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISNPPFGKINTTDT 144 (279)
T ss_pred CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEcCCccccCchhh
Confidence 46899999999999999999888889999999 88888776 68999999998433 33 99999888877654422
Q ss_pred ------------------HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 253 ------------------LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 253 ------------------~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
.+.++.+...|+| +|.++++ .. ..+ . + ....+.++
T Consensus 145 ~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p---~G~~~~~----ys--s~~-~-------y----------~~sl~~~~ 197 (279)
T PHA03411 145 KDVFEYTGGEFEFKVMTLGQKFADVGYFIVP---TGSAGFA----YS--GRP-Y-------Y----------DGTMKSNK 197 (279)
T ss_pred hhhhhhccCccccccccHHHHHhhhHheecC---CceEEEE----Ee--ccc-c-------c----------cccCCHHH
Confidence 3456667777888 7766555 11 110 0 0 01135899
Q ss_pred HHHHHHHCCCCc
Q 044482 315 FKALAMAAGFGT 326 (345)
Q Consensus 315 ~~~ll~~aGf~~ 326 (345)
|+++|+++||..
T Consensus 198 y~~~l~~~g~~~ 209 (279)
T PHA03411 198 YLKWSKQTGLVT 209 (279)
T ss_pred HHHHHHhcCcEe
Confidence 999999999964
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.4e-08 Score=87.28 Aligned_cols=95 Identities=13% Similarity=0.082 Sum_probs=70.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-D~i~~~~vlh 245 (345)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+.++. . |+|+++--.+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~ 112 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSNPPYV 112 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEECCCCC
Confidence 455579999999999999998876 3348999999 77776554 578889998875553 3 9999873222
Q ss_pred cCCh-------------------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSD-------------------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d-------------------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.-++ .....+++++.+.|+| ||+++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~---gG~l~~~ 158 (223)
T PRK14967 113 PAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP---GGSLLLV 158 (223)
T ss_pred CCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 1111 1135688999999999 9999986
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=85.87 Aligned_cols=139 Identities=17% Similarity=0.155 Sum_probs=91.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------------------------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------------------ 219 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------------------ 219 (345)
|-....+|||||..|.++..+++.+-...++++|+ |..|..|+
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~ 135 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADR 135 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccc
Confidence 55678999999999999999999998888999999 66677665
Q ss_pred ---------------CceEEeccCCc-CCCCCCEEEe----ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 220 ---------------CVEHVEGDMFV-NVPSGQAIFT----KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 220 ---------------ri~~~~gd~~~-~~p~~D~i~~----~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
++.+...||++ ..|.-|+|+| +||=-+|.|+-..++|+++.+.|.| ||.+++- +
T Consensus 136 a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~p---gGiLvvE--P- 209 (288)
T KOG2899|consen 136 AFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHP---GGILVVE--P- 209 (288)
T ss_pred cccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCc---CcEEEEc--C-
Confidence 12222233443 2233388776 4555589999999999999999999 8865554 2
Q ss_pred CCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC--CCCce
Q 044482 280 LPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA--GFGTI 327 (345)
Q Consensus 280 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a--Gf~~~ 327 (345)
++....... ..... .+....-......+.++.++.+. ||+.+
T Consensus 210 ---QpWksY~ka-ar~~e--~~~~ny~~i~lkp~~f~~~l~q~~vgle~~ 253 (288)
T KOG2899|consen 210 ---QPWKSYKKA-ARRSE--KLAANYFKIFLKPEDFEDWLNQIVVGLESV 253 (288)
T ss_pred ---CchHHHHHH-HHHHH--HhhcCccceecCHHHHHhhhhhhhhheeee
Confidence 221111111 11111 11111123345788999999987 55543
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.1e-08 Score=85.43 Aligned_cols=165 Identities=12% Similarity=0.082 Sum_probs=101.8
Q ss_pred CcchhhhhccCchhHHHHHHHHHHh----hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhh
Q 044482 138 HIMDCIYLTMLPMMLNLFNQSMQNH----TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY 213 (345)
Q Consensus 138 g~~~~~~~~~~~~~~~~f~~~m~~~----~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~ 213 (345)
|..-++.+.++|+.-+.|+++-... .....+.+++.+..-+....|.|+|||.+.++..+.+ ..++.-+|+-.
T Consensus 27 s~~A~~lf~~dP~~F~~YH~Gfr~Qv~~WP~nPvd~iI~~l~~~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva 103 (219)
T PF05148_consen 27 SEEALKLFQEDPELFDIYHEGFRQQVKKWPVNPVDVIIEWLKKRPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA 103 (219)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHCTSSS-HHHHHHHHHCTS-TTS-EEEES-TT-HHHHH--S------EEEEESS-
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHhcCCCEEEEECCCchHHHHHhccc---CceEEEeeccC
Confidence 4445666778887766666654432 2233556777766333456899999999999966543 34788999822
Q ss_pred HhhhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh
Q 044482 214 VIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN 290 (345)
Q Consensus 214 ~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~ 290 (345)
. +-.+++.|+-. |++++ |++++.-.|.- .+....|+++.|.||| ||.+.|. |...
T Consensus 104 ~-----n~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~---~G~L~IA-EV~S---------- 161 (219)
T PF05148_consen 104 P-----NPRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKP---GGILKIA-EVKS---------- 161 (219)
T ss_dssp S-----STTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEE---EEEEEEE-EEGG----------
T ss_pred C-----CCCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheecc---CcEEEEE-Eecc----------
Confidence 1 33467899976 77765 99888877743 2346789999999999 9999999 6421
Q ss_pred hhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 291 RNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 291 ~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++ -+.+++.+.+++.||+............+++..|.
T Consensus 162 Rf-----------------~~~~~F~~~~~~~GF~~~~~d~~n~~F~~f~F~K~ 198 (219)
T PF05148_consen 162 RF-----------------ENVKQFIKALKKLGFKLKSKDESNKHFVLFEFKKI 198 (219)
T ss_dssp G------------------S-HHHHHHHHHCTTEEEEEEE--STTEEEEEEEE-
T ss_pred cC-----------------cCHHHHHHHHHHCCCeEEecccCCCeEEEEEEEEc
Confidence 11 13677899999999999876555566788888775
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.89 E-value=1e-08 Score=77.75 Aligned_cols=89 Identities=20% Similarity=0.226 Sum_probs=72.1
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC--C-CC-CEEEeccccccC
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV--P-SG-QAIFTKSVLLNW 247 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~--p-~~-D~i~~~~vlh~~ 247 (345)
+++|+|||.|.++..+++ .+..+++++|+ +..+..++ +++++.+|+.+.. + .. |++++...++++
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 67789999998 44443221 7899999998833 2 33 999999999886
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+....+++++.+.|+| +|.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~---~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKP---GGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCC---CCEEEEE
Confidence 45667899999999999 9988764
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.6e-08 Score=92.72 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=73.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEec------
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTK------ 241 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~------ 241 (345)
.+|||+|||+|.++..++..+|+.+++++|+ +.+++.++ +++++.+|++++++. . |+|+++
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 5899999999999999999999999999999 77777665 489999999987764 4 999885
Q ss_pred -------cccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 -------SVLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 -------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++++-+. +...++++++.+.|+| ||.+++-
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~---gG~l~~e 243 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKP---NGFLVCE 243 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccC---CCEEEEE
Confidence 23333221 1356799999999999 9977655
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.9e-08 Score=84.38 Aligned_cols=95 Identities=22% Similarity=0.191 Sum_probs=78.7
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---CCCE
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---SGQA 237 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~~D~ 237 (345)
+..+. ..+..+++|||||+|..+..++..+|..+++.+|. ++.++..+ +++++.||.-+.++ +-|.
T Consensus 27 ls~L~-~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~da 105 (187)
T COG2242 27 LSKLR-PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDA 105 (187)
T ss_pred HHhhC-CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCE
Confidence 45555 67778999999999999999999999999999998 66665443 89999999987444 2499
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
||+..-- ....+|..+...|+| ||+|++.
T Consensus 106 iFIGGg~------~i~~ile~~~~~l~~---ggrlV~n 134 (187)
T COG2242 106 IFIGGGG------NIEEILEAAWERLKP---GGRLVAN 134 (187)
T ss_pred EEECCCC------CHHHHHHHHHHHcCc---CCeEEEE
Confidence 9998762 225789999999999 9999988
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.5e-08 Score=86.18 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=72.0
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCcCCC----CC-CEEEecccc---
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFVNVP----SG-QAIFTKSVL--- 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~~~p----~~-D~i~~~~vl--- 244 (345)
..+|||+|||+|.++..++++.|..+++++|. |.+++.++ +++++.+|+++.++ .. |+|+++--.
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~~ 166 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDALPTALRGRVDILAANAPYVPT 166 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhcchhcCCCEeEEEECCCCCCc
Confidence 35899999999999999999999999999999 88888776 46899999987543 23 998876321
Q ss_pred ---ccCChh------------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 ---LNWSDE------------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 ---h~~~d~------------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+++ -..++++.+.+.|+| ||++++.
T Consensus 167 ~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~---gG~l~l~ 215 (251)
T TIGR03704 167 DAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAP---GGHLLVE 215 (251)
T ss_pred hhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 111111 124788888899999 9988876
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.6e-08 Score=93.22 Aligned_cols=100 Identities=15% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC-C-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS-G-Q 236 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~-~-D 236 (345)
++.... +.+..+|||+|||+|.++...+.. ..+++++|+ +.++..++ .+.+..+|+.+ +.+. . |
T Consensus 174 ~~~l~~-~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D 250 (329)
T TIGR01177 174 MVNLAR-VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVD 250 (329)
T ss_pred HHHHhC-CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCC
Confidence 344334 667789999999999999886653 578999999 77877655 46788999987 5553 3 9
Q ss_pred EEEecccc-------ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVL-------LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vl-------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++.--. .+...+...++|+++++.|+| ||++++.
T Consensus 251 ~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~---gG~lv~~ 293 (329)
T TIGR01177 251 AIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKS---EGWIVYA 293 (329)
T ss_pred EEEECCCCcCcccccCCchHHHHHHHHHHHHHHccC---CcEEEEE
Confidence 99985221 111223347899999999999 9998887
|
This family is found exclusively in the Archaea. |
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=7e-09 Score=81.76 Aligned_cols=91 Identities=19% Similarity=0.175 Sum_probs=72.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C--CCCC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N--VPSG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~--~p~~--D~i~~~~vl 244 (345)
.+|||+|||+|.++..+++.. ..+++++|+ |..++.++ +++++.+|+++ . .+.+ |+|+++--.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 589999999999999999998 789999999 77766554 68999999987 3 4443 999998666
Q ss_pred ccCCh------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSD------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.... +....+++++.+.|+| ||.++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~---gG~~~~~ 114 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKP---GGVLVFI 114 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 54321 1346889999999999 9988876
|
... |
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.8e-08 Score=84.57 Aligned_cols=102 Identities=16% Similarity=0.192 Sum_probs=74.4
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CCC-C-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VPS-G-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p~-~-D~ 237 (345)
+.+.+.......+|||+|||+|.++..+++++ +..+++++|+.++. ...+++++.+|+.++ .+. + |+
T Consensus 23 ~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~ 101 (188)
T TIGR00438 23 LNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-PIENVDFIRGDFTDEEVLNKIRERVGDDKVDV 101 (188)
T ss_pred HHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-cCCCceEEEeeCCChhHHHHHHHHhCCCCccE
Confidence 44445445667899999999999999999887 56789999995433 223788899998762 343 3 99
Q ss_pred EEeccccc---cCCh------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLL---NWSD------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh---~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++....| .|+- +...++|+++++.|+| ||++++.
T Consensus 102 V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lvi~ 145 (188)
T TIGR00438 102 VMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKP---KGNFVVK 145 (188)
T ss_pred EEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 99854322 1221 1235789999999999 9999886
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.7e-08 Score=94.45 Aligned_cols=129 Identities=14% Similarity=0.159 Sum_probs=92.0
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecc----
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKS---- 242 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~---- 242 (345)
..+|||||||+|.++..+++++|+.+++++|+ |.+++.|+ +++++.+|+++.++. . |+|+++-
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPYi~ 218 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPYIS 218 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCCCC
Confidence 35899999999999999999999999999999 77877665 588999999886653 3 9999841
Q ss_pred ----------ccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 243 ----------VLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 243 ----------vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
++.+.+. +--.++++++.+.|+| ||.+++- . ..
T Consensus 219 ~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~---gG~l~lE--i--g~-------------------- 271 (506)
T PRK01544 219 HSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKP---NGKIILE--I--GF-------------------- 271 (506)
T ss_pred chhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccC---CCEEEEE--E--CC--------------------
Confidence 1111111 1234688899999999 9987654 1 00
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEE
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFY 342 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 342 (345)
...+...+++++.||+.+++..- .+..-++.+.
T Consensus 272 -------~q~~~v~~~~~~~g~~~~~~~~D~~g~~R~v~~~ 305 (506)
T PRK01544 272 -------KQEEAVTQIFLDHGYNIESVYKDLQGHSRVILIS 305 (506)
T ss_pred -------chHHHHHHHHHhcCCCceEEEecCCCCceEEEec
Confidence 01455778889999988776543 4444444443
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=98.78 E-value=4.1e-08 Score=90.09 Aligned_cols=95 Identities=14% Similarity=0.106 Sum_probs=68.1
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
+++.+. . ...+|||||||+|.++..+++. +..+++++|+ |.+++.++ ++.+..+|.....+.. |+
T Consensus 152 ~l~~~~-~-~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDl 228 (288)
T TIGR00406 152 WLEDLD-L-KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADV 228 (288)
T ss_pred HHHhhc-C-CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceE
Confidence 344443 2 4479999999999999888764 4458999999 77777665 3455555533222233 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++... +....+++++++.|+| ||++++.
T Consensus 229 Vvan~~~-----~~l~~ll~~~~~~Lkp---gG~li~s 258 (288)
T TIGR00406 229 IVANILA-----EVIKELYPQFSRLVKP---GGWLILS 258 (288)
T ss_pred EEEecCH-----HHHHHHHHHHHHHcCC---CcEEEEE
Confidence 9886443 2345789999999999 9999888
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.1e-08 Score=85.32 Aligned_cols=94 Identities=17% Similarity=0.260 Sum_probs=67.8
Q ss_pred cccceEEecCCccH----HHHHHHHH----CC-CCeEEEeeh-hhHhhhCC-----------------------------
Q 044482 179 ELKKLVDVASCLGA----NMSLIVNT----YP-QITGINFDL-PYVIKNAP----------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~----~~~~l~~~----~p-~~~~~~~Dl-p~~i~~a~----------------------------- 219 (345)
..-+|...||++|. +++.+.+. .+ +.++++-|+ +.+++.|+
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999997 33334441 12 367899999 77887766
Q ss_pred --------CceEEeccCCc-CCCC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --------CVEHVEGDMFV-NVPS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --------ri~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|..+ +.+. . |+|+|+|||-+++++...+++++++++|+| ||.|++-
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~p---gG~L~lG 174 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKP---GGYLFLG 174 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEE---EEEEEE-
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCC---CCEEEEe
Confidence 68999999999 3333 3 999999999999999999999999999999 9988887
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.8e-07 Score=82.05 Aligned_cols=96 Identities=8% Similarity=0.060 Sum_probs=80.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------------C--CceEEeccCCc-CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------------P--CVEHVEGDMFV-NVP- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------------~--ri~~~~gd~~~-~~p- 233 (345)
....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+ + +++++++|+|+ +.+
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~ 119 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIA 119 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccc
Confidence 34579999999999999999986 457999999 5555542 1 78999999998 322
Q ss_pred --CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 234 --SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 234 --~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.+ |+|+=+.+|+.++++...+..+++.+.|+| ||+++++ ...
T Consensus 120 ~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~p---gg~llll-~~~ 165 (226)
T PRK13256 120 NNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSN---NTQILLL-VME 165 (226)
T ss_pred cccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCC---CcEEEEE-EEe
Confidence 13 999999999999999999999999999999 9998888 543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.1e-07 Score=83.27 Aligned_cols=93 Identities=12% Similarity=0.173 Sum_probs=71.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-- 235 (345)
.+++.++ .....+|||||||+|.++..+++... +++++|. +.+++.++ +++++.+|+.+.++. +
T Consensus 69 ~l~~~l~-~~~~~~VLeiG~GsG~~t~~la~~~~--~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~f 145 (212)
T PRK00312 69 RMTELLE-LKPGDRVLEIGTGSGYQAAVLAHLVR--RVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPF 145 (212)
T ss_pred HHHHhcC-CCCCCEEEEECCCccHHHHHHHHHhC--EEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCc
Confidence 4455555 56678999999999999988887753 6889998 77776554 588999998875542 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...++++ .+++.+.|+| ||++++.
T Consensus 146 D~I~~~~~~~~~--------~~~l~~~L~~---gG~lv~~ 174 (212)
T PRK00312 146 DRILVTAAAPEI--------PRALLEQLKE---GGILVAP 174 (212)
T ss_pred CEEEEccCchhh--------hHHHHHhcCC---CcEEEEE
Confidence 999998776554 3456789999 9998887
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.1e-07 Score=78.36 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=110.0
Q ss_pred chhhhhccCchhHHHHHHHHHHhhH----HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHh
Q 044482 140 MDCIYLTMLPMMLNLFNQSMQNHTA----IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVI 215 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~~m~~~~~----~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i 215 (345)
..++.+.+||..-+.|+......-. .....|++.+..-+....|-|+|||-+.++. .- .-.++.+||-.+
T Consensus 137 ~A~~lfkedp~afdlYH~gfr~QV~kWP~nPld~ii~~ik~r~~~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a~- 210 (325)
T KOG3045|consen 137 EAFDLFKEDPTAFDLYHAGFRSQVKKWPENPLDVIIRKIKRRPKNIVIADFGCGEAKIAS----SE-RHKVHSFDLVAV- 210 (325)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHHHHhCCCChHHHHHHHHHhCcCceEEEecccchhhhhh----cc-ccceeeeeeecC-
Confidence 3455667888877777776554322 2245667766633456789999999999886 11 125788887322
Q ss_pred hhCCCceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh
Q 044482 216 KNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN 292 (345)
Q Consensus 216 ~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~ 292 (345)
+-.++..|+.+ |+++. |++++.-.|.- .+....+++++|.|+| ||.++|. |.-.
T Consensus 211 ----~~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~---gG~l~IA-Ev~S------------ 267 (325)
T KOG3045|consen 211 ----NERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKP---GGLLYIA-EVKS------------ 267 (325)
T ss_pred ----CCceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhcc---CceEEEE-ehhh------------
Confidence 44567899988 77754 88776655532 2335789999999999 9999999 5411
Q ss_pred hhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 293 ILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 293 ~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
.. -+...+.+.|+..||...+.........+++..|+
T Consensus 268 -Rf--------------~dv~~f~r~l~~lGF~~~~~d~~n~~F~lfefkK~ 304 (325)
T KOG3045|consen 268 -RF--------------SDVKGFVRALTKLGFDVKHKDVSNKYFTLFEFKKT 304 (325)
T ss_pred -hc--------------ccHHHHHHHHHHcCCeeeehhhhcceEEEEEEecC
Confidence 11 12445889999999998776655556777777764
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.9e-08 Score=88.32 Aligned_cols=95 Identities=18% Similarity=0.144 Sum_probs=71.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC--CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV--PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~--p~-~-D~i 238 (345)
++.++||+||||.|..+..++++.+..+++++|+ |.+++.++ |++++.+|..+-+ +. . |+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 3567999999999999999997645568999999 88877654 6889999987733 23 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++...-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKE---DGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864433222221 25789999999999 9987765
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.3e-07 Score=83.27 Aligned_cols=146 Identities=16% Similarity=0.109 Sum_probs=91.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--CceEEeccCCcCCCCC-CEEEeccccccCChhHHHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~iL 256 (345)
..++||||.|.|..+..++..+.++.++-.. +.|....+ +++++..|-...-+.. |+|.|-|+|-...++ ..+|
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S-~~Mr~rL~~kg~~vl~~~~w~~~~~~fDvIscLNvLDRc~~P--~~LL 171 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEAS-PPMRWRLSKKGFTVLDIDDWQQTDFKFDVISCLNVLDRCDRP--LTLL 171 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCC-HHHHHHHHhCCCeEEehhhhhccCCceEEEeehhhhhccCCH--HHHH
Confidence 4689999999999999999999875444433 45544333 5666655433322223 999999999777776 5899
Q ss_pred HHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 257 KNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 257 ~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
+.++++|+| +|++++. .++|-.+--.........-+ ..+.+.+..-+-..+.+.++|+.+||++++....|+
T Consensus 172 ~~i~~~l~p---~G~lilA--vVlP~~pyVE~~~g~~~~P~-e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~tr~PY 243 (265)
T PF05219_consen 172 RDIRRALKP---NGRLILA--VVLPFRPYVEFGGGKSNRPS-ELLPVKGATFEEQVSSLVNVFEPAGFEVERWTRLPY 243 (265)
T ss_pred HHHHHHhCC---CCEEEEE--EEecccccEEcCCCCCCCch-hhcCCCCCcHHHHHHHHHHHHHhcCCEEEEEeccCc
Confidence 999999999 9988876 44443210000000000000 011121111122233445899999999999998874
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=8e-08 Score=87.38 Aligned_cols=93 Identities=16% Similarity=0.205 Sum_probs=74.8
Q ss_pred ccceEEecCCccH----HHHHHHHHCC----CCeEEEeeh-hhHhhhCC-------------------------------
Q 044482 180 LKKLVDVASCLGA----NMSLIVNTYP----QITGINFDL-PYVIKNAP------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~----~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~------------------------------- 219 (345)
.-+|...||++|. +++.+.+..+ +.++++.|+ +.+++.|+
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 3689999999997 3444444433 367899998 66666543
Q ss_pred ---------CceEEeccCCc-CCC--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ---------CVEHVEGDMFV-NVP--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ---------ri~~~~gd~~~-~~p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|..+ ++| .. |+|+|+++|.|++++...+++++++++|+| ||.|++-
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~p---gG~L~lG 261 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKP---DGLLFAG 261 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 57899999998 554 33 999999999999999999999999999999 9987776
|
|
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-07 Score=82.74 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=94.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------------CceEEeccCCc-CCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------------ri~~~~gd~~~-~~p 233 (345)
.....+||+.|||.|.-+..|+++ +.+++++|+ +..++.+. +|++..||||+ +-.
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 455679999999999999999987 468999999 55565531 57899999999 322
Q ss_pred C-C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC-CCchhhhhhhccchhhhhhcCCCcc
Q 044482 234 S-G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP-EFSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 234 ~-~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
. + |+|+=...|+-++++...+-.+++++.|+| ||+++++ ....+... .+|+ ..
T Consensus 113 ~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p---~g~~lLi-~l~~~~~~~~GPP-------------------f~ 169 (218)
T PF05724_consen 113 DVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKP---GGRGLLI-TLEYPQGEMEGPP-------------------FS 169 (218)
T ss_dssp CHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEE---EEEEEEE-EEES-CSCSSSSS---------------------
T ss_pred hcCCceEEEEecccccCCHHHHHHHHHHHHHHhCC---CCcEEEE-EEEcCCcCCCCcC-------------------CC
Confidence 2 2 999999999999999999999999999999 9995444 33322221 1111 12
Q ss_pred CCHHHHHHHHHHCCCCceEEEe
Q 044482 310 RTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.+.+|+++++. .+|++.....
T Consensus 170 v~~~ev~~l~~-~~f~i~~l~~ 190 (218)
T PF05724_consen 170 VTEEEVRELFG-PGFEIEELEE 190 (218)
T ss_dssp --HHHHHHHHT-TTEEEEEEEE
T ss_pred CCHHHHHHHhc-CCcEEEEEec
Confidence 35889999999 8888766543
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.9e-07 Score=81.92 Aligned_cols=133 Identities=17% Similarity=0.185 Sum_probs=96.0
Q ss_pred chhhhhccCchhHHHHHHHHHHhhHH----------HHHHHHHhccCcc--cccceEEecCCccH----HHHHHHHHCC-
Q 044482 140 MDCIYLTMLPMMLNLFNQSMQNHTAI----------VMKKILEIYKGFK--ELKKLVDVASCLGA----NMSLIVNTYP- 202 (345)
Q Consensus 140 ~~~~~~~~~~~~~~~f~~~m~~~~~~----------~~~~i~~~~~~~~--~~~~vlDiGgG~G~----~~~~l~~~~p- 202 (345)
.++..+..+++..+.|..+|...-.. ....++..+-... +.-+|.-.||++|. +++.+.+..|
T Consensus 45 ~y~~~l~~~~~e~~~~l~~ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~ 124 (268)
T COG1352 45 EYLNLLESDSEELQAFLDALTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGK 124 (268)
T ss_pred HHHHHHhCCHHHHHHHHHHhhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhcc
Confidence 34555666666666666666532211 1122222211011 35689999999997 6666667776
Q ss_pred ----CCeEEEeeh-hhHhhhCC--------------------------------------CceEEeccCCcCC--CCC-C
Q 044482 203 ----QITGINFDL-PYVIKNAP--------------------------------------CVEHVEGDMFVNV--PSG-Q 236 (345)
Q Consensus 203 ----~~~~~~~Dl-p~~i~~a~--------------------------------------ri~~~~gd~~~~~--p~~-D 236 (345)
..++++-|+ ..+++.|+ .|.|..+|.+++. +.. |
T Consensus 125 ~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD 204 (268)
T COG1352 125 LAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSPFLGKFD 204 (268)
T ss_pred ccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCccccCCCC
Confidence 467899998 77777766 5889999999844 344 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|+|||=+|+.+...+++++.+..|+| ||.|+|-
T Consensus 205 ~IfCRNVLIYFd~~~q~~il~~f~~~L~~---gG~LflG 240 (268)
T COG1352 205 LIFCRNVLIYFDEETQERILRRFADSLKP---GGLLFLG 240 (268)
T ss_pred EEEEcceEEeeCHHHHHHHHHHHHHHhCC---CCEEEEc
Confidence 99999999999999999999999999999 9998887
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=78.92 Aligned_cols=127 Identities=21% Similarity=0.203 Sum_probs=89.8
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEEEec--ccccc--
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAIFTK--SVLLN-- 246 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i~~~--~vlh~-- 246 (345)
+|||||||+|..+..++.++|++++++.|+ |..++.|+ ++.++.+|.|++++.. |+|+++ ++=..
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~~~~fDlIVsNPPYip~~~~ 192 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPLRGKFDLIVSNPPYIPAEDP 192 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccccCCceeEEEeCCCCCCCccc
Confidence 799999999999999999999999999999 88887775 4567777999877644 988875 22221
Q ss_pred -CCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 247 -WSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 247 -~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
..+ +-..+++.++.+.|+| ||.+++- . . ..
T Consensus 193 ~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~---~g~l~le--~----g-------------------~~--- 241 (280)
T COG2890 193 ELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKP---GGVLILE--I----G-------------------LT--- 241 (280)
T ss_pred ccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCC---CcEEEEE--E----C-------------------CC---
Confidence 111 1335788888899999 7765555 1 0 00
Q ss_pred ccCCHHHHHHHHHHCC-CCceEEEecC-CceEEEEEE
Q 044482 308 KGRTAGEFKALAMAAG-FGTIKVICRS-YCYWVIEFY 342 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aG-f~~~~~~~~~-~~~~vi~~~ 342 (345)
..+..++++.+.| |..+.+.... +...++.+.
T Consensus 242 ---q~~~v~~~~~~~~~~~~v~~~~d~~g~~rv~~~~ 275 (280)
T COG2890 242 ---QGEAVKALFEDTGFFEIVETLKDLFGRDRVVLAK 275 (280)
T ss_pred ---cHHHHHHHHHhcCCceEEEEEecCCCceEEEEEE
Confidence 1566789999999 6656555544 334444443
|
|
| >PF08100 Dimerisation: Dimerisation domain; InterPro: IPR012967 This domain is found at the N terminus of a variety of plant O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.60 E-value=2e-09 Score=71.04 Aligned_cols=51 Identities=20% Similarity=0.274 Sum_probs=41.8
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPV 81 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~ 81 (345)
|+|++|++|| |||.|...||.+.|++|||.+++. .+++++..++|+||+|+
T Consensus 1 MaLk~aveLg-I~dii~~~g~~~ls~~eia~~l~~---~~p~~~~~L~RimR~L~ 51 (51)
T PF08100_consen 1 MALKCAVELG-IPDIIHNAGGGPLSLSEIAARLPT---SNPSAPPMLDRIMRLLV 51 (51)
T ss_dssp HHHHHHHHTT-HHHHHHHHTTS-BEHHHHHHTSTC---T-TTHHHHHHHHHHHHH
T ss_pred CcHHHHHHcC-cHHHHHHcCCCCCCHHHHHHHcCC---CCcchHHHHHHHHHHhC
Confidence 7899999999 999996555478999999999993 25567889999999874
|
It has been shown to mediate dimerisation of these proteins [].; GO: 0008168 methyltransferase activity, 0046983 protein dimerization activity; PDB: 1ZGJ_A 1ZG3_A 1ZHF_A 1ZGA_A 2QYO_A 1KYW_A 1KYZ_A 3REO_D 1FPX_A 1FP2_A .... |
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.60 E-value=3.5e-07 Score=75.81 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=86.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC-CCCC--CEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN-VPSG--QAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~-~p~~--D~i~~~~vlh 245 (345)
..+|||+|||.|+++..|++.-=.-..+++|. +..++.|+ .|+|++.|+++| +-.+ |+|+=+..+-
T Consensus 68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D 147 (227)
T KOG1271|consen 68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD 147 (227)
T ss_pred ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence 34999999999999999998743335788887 66666555 399999999984 2233 8887665553
Q ss_pred c------CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 246 N------WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 246 ~------~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
. -.+.....-+-.+.+.|+| ||.++|. . + ..|.+|+.+.+
T Consensus 148 AisLs~d~~~~r~~~Y~d~v~~ll~~---~gifvIt-S-------------------------C-----N~T~dELv~~f 193 (227)
T KOG1271|consen 148 AISLSPDGPVGRLVVYLDSVEKLLSP---GGIFVIT-S-------------------------C-----NFTKDELVEEF 193 (227)
T ss_pred eeecCCCCcccceeeehhhHhhccCC---CcEEEEE-e-------------------------c-----CccHHHHHHHH
Confidence 2 2222223456778888899 8988888 1 1 14689999999
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+.-||+.....+.|
T Consensus 194 ~~~~f~~~~tvp~p 207 (227)
T KOG1271|consen 194 ENFNFEYLSTVPTP 207 (227)
T ss_pred hcCCeEEEEeeccc
Confidence 99999888777665
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=78.45 Aligned_cols=99 Identities=12% Similarity=0.183 Sum_probs=68.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D 236 (345)
..+++.++ +....+|||||||+|.++..++++ ..+++++|. +.+++.++ +++++.+|+.+ +.+.. |
T Consensus 3 ~~i~~~~~-~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~~~d 79 (169)
T smart00650 3 DKIVRAAN-LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKLQPY 79 (169)
T ss_pred HHHHHhcC-CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCccccCCC
Confidence 45667776 667789999999999999999988 467899998 66766554 68999999998 55543 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+. +.-++.+.+...+++++.. +.+ +|.+++-
T Consensus 80 ~vi~-n~Py~~~~~~i~~~l~~~~--~~~---~~~l~~q 112 (169)
T smart00650 80 KVVG-NLPYNISTPILFKLLEEPP--AFR---DAVLMVQ 112 (169)
T ss_pred EEEE-CCCcccHHHHHHHHHhcCC--Ccc---eEEEEEE
Confidence 6655 4555555444444443221 335 5655444
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-07 Score=80.69 Aligned_cols=141 Identities=12% Similarity=0.123 Sum_probs=94.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------Cc-eEEeccCCc-CCCC-CCEEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CV-EHVEGDMFV-NVPS-GQAIF 239 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri-~~~~gd~~~-~~p~-~D~i~ 239 (345)
++...+ ....+++||+|||||.++.+|...-. +.+++|+ ..|+++|. .+ .-...+|.. .-++ .|+|.
T Consensus 117 mI~~~~-~g~F~~~lDLGCGTGL~G~~lR~~a~--~ltGvDiS~nMl~kA~eKg~YD~L~~Aea~~Fl~~~~~er~DLi~ 193 (287)
T COG4976 117 MIGKAD-LGPFRRMLDLGCGTGLTGEALRDMAD--RLTGVDISENMLAKAHEKGLYDTLYVAEAVLFLEDLTQERFDLIV 193 (287)
T ss_pred HHHhcc-CCccceeeecccCcCcccHhHHHHHh--hccCCchhHHHHHHHHhccchHHHHHHHHHHHhhhccCCcccchh
Confidence 344444 44578999999999999999987754 4688999 78888876 11 111122443 2222 39999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
...||-++.+-+ .++--+...|+| ||.+....|. .++... +++.-. .-...++..++.++
T Consensus 194 AaDVl~YlG~Le--~~~~~aa~~L~~---gGlfaFSvE~-l~~~~~-------------f~l~ps-~RyAH~~~YVr~~l 253 (287)
T COG4976 194 AADVLPYLGALE--GLFAGAAGLLAP---GGLFAFSVET-LPDDGG-------------FVLGPS-QRYAHSESYVRALL 253 (287)
T ss_pred hhhHHHhhcchh--hHHHHHHHhcCC---CceEEEEecc-cCCCCC-------------eecchh-hhhccchHHHHHHH
Confidence 999998887754 789999999999 9977766233 222210 000000 11223577789999
Q ss_pred HHCCCCceEEEecC
Q 044482 320 MAAGFGTIKVICRS 333 (345)
Q Consensus 320 ~~aGf~~~~~~~~~ 333 (345)
+..||.++++.+++
T Consensus 254 ~~~Gl~~i~~~~tt 267 (287)
T COG4976 254 AASGLEVIAIEDTT 267 (287)
T ss_pred HhcCceEEEeeccc
Confidence 99999999987653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.9e-07 Score=85.29 Aligned_cols=95 Identities=16% Similarity=0.211 Sum_probs=72.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--SG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~~ 235 (345)
.+++.++ ..+..+|||||||+|.++..+++..+. .+++++|. +++++.|+ +++++.+|..+..+ ..
T Consensus 71 ~ll~~L~-i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~ 149 (322)
T PRK13943 71 LFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAP 149 (322)
T ss_pred HHHHhcC-CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCC
Confidence 4555555 666689999999999999999998864 47899998 77776554 58899999876433 22
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+++. ...+.+.|+| ||++++.
T Consensus 150 fD~Ii~~~g~~~i--------p~~~~~~Lkp---gG~Lvv~ 179 (322)
T PRK13943 150 YDVIFVTVGVDEV--------PETWFTQLKE---GGRVIVP 179 (322)
T ss_pred ccEEEECCchHHh--------HHHHHHhcCC---CCEEEEE
Confidence 999987665443 3345678999 9998885
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.56 E-value=2.7e-07 Score=85.02 Aligned_cols=94 Identities=19% Similarity=0.091 Sum_probs=69.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCC-C-CE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPS-G-QA 237 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~-~-D~ 237 (345)
++.++||+||||.|.++..+++. |. .+++++|+ +.|++.++ |++++.+|..+ ..++ . |+
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 45689999999999999999865 55 57899998 66776544 79999999865 3333 3 99
Q ss_pred EEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++-..-+.-+... ...+++.+++.|+| ||.+++.
T Consensus 169 Ii~D~~dp~~~~~~L~t~ef~~~~~~~L~p---gGvlv~q 205 (308)
T PLN02366 169 IIVDSSDPVGPAQELFEKPFFESVARALRP---GGVVCTQ 205 (308)
T ss_pred EEEcCCCCCCchhhhhHHHHHHHHHHhcCC---CcEEEEC
Confidence 98854332222111 24689999999999 9987665
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.1e-07 Score=78.83 Aligned_cols=108 Identities=18% Similarity=0.205 Sum_probs=68.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------ri~~~~gd~ 228 (345)
..+++.+. ..+...++|||||.|......+-.++--+++|+++ |...+.|+ ++++..|||
T Consensus 32 ~~il~~~~-l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdf 110 (205)
T PF08123_consen 32 SKILDELN-LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDF 110 (205)
T ss_dssp HHHHHHTT---TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-T
T ss_pred HHHHHHhC-CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCc
Confidence 35566666 77778999999999999988887775445999998 54443332 678899999
Q ss_pred Cc-CC-----CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 229 FV-NV-----PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 229 ~~-~~-----p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
++ +. .++|+|++++.+ |+++-..+ |++....||+ |.+|+.. ..+.+..
T Consensus 111 l~~~~~~~~~s~AdvVf~Nn~~--F~~~l~~~-L~~~~~~lk~---G~~IIs~-~~~~~~~ 164 (205)
T PF08123_consen 111 LDPDFVKDIWSDADVVFVNNTC--FDPDLNLA-LAELLLELKP---GARIIST-KPFCPRR 164 (205)
T ss_dssp TTHHHHHHHGHC-SEEEE--TT--T-HHHHHH-HHHHHTTS-T---T-EEEES-S-SS-TT
T ss_pred cccHhHhhhhcCCCEEEEeccc--cCHHHHHH-HHHHHhcCCC---CCEEEEC-CCcCCCC
Confidence 87 32 356999999987 67665544 4777788999 8888777 7766654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.9e-06 Score=78.27 Aligned_cols=124 Identities=23% Similarity=0.257 Sum_probs=84.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------Cce----EEeccCCcCCCC-C-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVE----HVEGDMFVNVPS-G- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~----~~~gd~~~~~p~-~- 235 (345)
.+++.+. .++.++||+|||+|.++++.++.-. .+++++|+ |..++.++ ++. ....+.. ..+. +
T Consensus 154 ~~Le~~~--~~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~-~~~~~~~ 229 (300)
T COG2264 154 EALEKLL--KKGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLL-EVPENGP 229 (300)
T ss_pred HHHHHhh--cCCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccch-hhcccCc
Confidence 3455554 3678999999999999999887653 47899999 76677666 333 2222222 3332 2
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|+.+ +| .+. ...+...+.+.++| ||++++. -. +.+ -.+.
T Consensus 230 ~DvIVAN-IL---A~v-l~~La~~~~~~lkp---gg~lIlS-GI-l~~----------------------------q~~~ 271 (300)
T COG2264 230 FDVIVAN-IL---AEV-LVELAPDIKRLLKP---GGRLILS-GI-LED----------------------------QAES 271 (300)
T ss_pred ccEEEeh-hh---HHH-HHHHHHHHHHHcCC---CceEEEE-ee-hHh----------------------------HHHH
Confidence 888765 33 222 35788999999999 9988888 21 111 1455
Q ss_pred HHHHHHHCCCCceEEEecCC
Q 044482 315 FKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~ 334 (345)
+.+.++++||+++++.....
T Consensus 272 V~~a~~~~gf~v~~~~~~~e 291 (300)
T COG2264 272 VAEAYEQAGFEVVEVLEREE 291 (300)
T ss_pred HHHHHHhCCCeEeEEEecCC
Confidence 77889999999998876643
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-07 Score=81.02 Aligned_cols=88 Identities=19% Similarity=0.163 Sum_probs=64.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---C-------ceEEeccCCcCC--CCC-CEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---C-------VEHVEGDMFVNV--PSG-QAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---r-------i~~~~gd~~~~~--p~~-D~i~~~~vlh 245 (345)
.+.++|||||+|..++.++..|. ++|+.|. +.|++.++ + .+....++.+-. ++. |+|++..++|
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k--~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~H 111 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYK--EVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVH 111 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhh--hheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHH
Confidence 34899999999988888888765 4899998 88998887 2 222222322211 233 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+-+ ++.+.++++|++ .|.++.+
T Consensus 112 WFdle---~fy~~~~rvLRk---~Gg~iav 135 (261)
T KOG3010|consen 112 WFDLE---RFYKEAYRVLRK---DGGLIAV 135 (261)
T ss_pred hhchH---HHHHHHHHHcCC---CCCEEEE
Confidence 99876 679999999999 5544444
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=80.01 Aligned_cols=87 Identities=17% Similarity=0.256 Sum_probs=64.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc----CCCCC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV----NVPSG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~----~~p~~--D~i~~~~vl 244 (345)
..+||||||.|.++..+++.+|+..++++|. ...+..+. ++.++.+|+.. -++++ |-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~--- 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN--- 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE---
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe---
Confidence 3899999999999999999999999999998 44444332 89999999876 13333 555443
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|||+ -...+|..+++.|+| ||.|.+.
T Consensus 96 --FPDPWpK~rH~krRl~~~~fl~~~~~~L~~---gG~l~~~ 132 (195)
T PF02390_consen 96 --FPDPWPKKRHHKRRLVNPEFLELLARVLKP---GGELYFA 132 (195)
T ss_dssp --S-----SGGGGGGSTTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred --CCCCCcccchhhhhcCCchHHHHHHHHcCC---CCEEEEE
Confidence 4444 124789999999999 9999998
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=78.21 Aligned_cols=91 Identities=8% Similarity=0.102 Sum_probs=70.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------C-C-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------S-G- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~-~- 235 (345)
..+.++|||||||+|..+..+++..| +.+++.+|. |+.++.|+ +++++.||+.+.++ . .
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 44668999999999999999998865 679999999 77776665 79999999976221 2 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++- -..+.-...+..+.+.|+| ||.|++-
T Consensus 146 D~VfiD-----a~k~~y~~~~~~~~~ll~~---GG~ii~d 177 (234)
T PLN02781 146 DFAFVD-----ADKPNYVHFHEQLLKLVKV---GGIIAFD 177 (234)
T ss_pred CEEEEC-----CCHHHHHHHHHHHHHhcCC---CeEEEEE
Confidence 999874 2334556789999999999 8865443
|
|
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.3e-07 Score=84.53 Aligned_cols=95 Identities=14% Similarity=-0.021 Sum_probs=69.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------------CceEEeccCCcCCC---CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------------CVEHVEGDMFVNVP---SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~~p---~~-D 236 (345)
.++++||+||||.|..+..+++..+..+++++|+ |+|++.|+ |++++.+|..+.++ .. |
T Consensus 149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD 228 (374)
T PRK01581 149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD 228 (374)
T ss_pred CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence 4567999999999999999997655578999999 88776433 88899999887332 23 9
Q ss_pred EEEeccccc---cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLL---NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh---~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++...-. ....--...+++.|++.|+| ||.+++.
T Consensus 229 VIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkP---gGV~V~Q 267 (374)
T PRK01581 229 VIIIDFPDPATELLSTLYTSELFARIATFLTE---DGAFVCQ 267 (374)
T ss_pred EEEEcCCCccccchhhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 999873110 00111125689999999999 9977666
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.1e-07 Score=81.98 Aligned_cols=143 Identities=17% Similarity=0.185 Sum_probs=89.6
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------Cce
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVE 222 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~ 222 (345)
.|..+-+.-++... .+++.+. ....+|||||||+|.++++.++... .+++++|+ |..++.|+ ++.
T Consensus 139 AFGTG~H~TT~lcl-~~l~~~~--~~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~ 214 (295)
T PF06325_consen 139 AFGTGHHPTTRLCL-ELLEKYV--KPGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIE 214 (295)
T ss_dssp SS-SSHCHHHHHHH-HHHHHHS--STTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEE
T ss_pred cccCCCCHHHHHHH-HHHHHhc--cCCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEE
Confidence 35554444444433 3444443 3447999999999999999887643 47999999 77677665 333
Q ss_pred EEeccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh
Q 044482 223 HVEGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM 300 (345)
Q Consensus 223 ~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~ 300 (345)
+ .. ....+++ |+|+.+ ++ .+....++..+.+.|+| ||.+++. -.+..
T Consensus 215 v--~~-~~~~~~~~~dlvvAN-I~----~~vL~~l~~~~~~~l~~---~G~lIlS-GIl~~------------------- 263 (295)
T PF06325_consen 215 V--SL-SEDLVEGKFDLVVAN-IL----ADVLLELAPDIASLLKP---GGYLILS-GILEE------------------- 263 (295)
T ss_dssp E--SC-TSCTCCS-EEEEEEE-S-----HHHHHHHHHHCHHHEEE---EEEEEEE-EEEGG-------------------
T ss_pred E--EE-ecccccccCCEEEEC-CC----HHHHHHHHHHHHHhhCC---CCEEEEc-cccHH-------------------
Confidence 2 21 2233333 888754 32 23446788889999999 9988887 22110
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
..+++.+.+++ ||++++........ .+.++|
T Consensus 264 ----------~~~~v~~a~~~-g~~~~~~~~~~~W~-~l~~~K 294 (295)
T PF06325_consen 264 ----------QEDEVIEAYKQ-GFELVEEREEGEWV-ALVFKK 294 (295)
T ss_dssp ----------GHHHHHHHHHT-TEEEEEEEEETTEE-EEEEEE
T ss_pred ----------HHHHHHHHHHC-CCEEEEEEEECCEE-EEEEEe
Confidence 14566778877 99998887765433 344444
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=4.9e-07 Score=82.23 Aligned_cols=95 Identities=15% Similarity=0.064 Sum_probs=70.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~ 239 (345)
+++.+||+||||+|.++..+++..+..+++++|+ +.+++.++ |++++.+|.++-+ +.. |+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 3456999999999999999988765678999998 77766544 5778888876622 233 9999
Q ss_pred eccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+...-+.-+... ....++++++.|+| ||.+++.
T Consensus 151 ~D~~~~~~~~~~l~~~ef~~~~~~~L~p---gG~lv~~ 185 (270)
T TIGR00417 151 VDSTDPVGPAETLFTKEFYELLKKALNE---DGIFVAQ 185 (270)
T ss_pred EeCCCCCCcccchhHHHHHHHHHHHhCC---CcEEEEc
Confidence 876533222222 35788999999999 9987776
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=80.48 Aligned_cols=138 Identities=19% Similarity=0.217 Sum_probs=79.8
Q ss_pred cccceEEecCCccH--HHHHHH-HHCCCCeEEEeeh-hhHhhhCC-------C--ceEEeccCCcC---C--CC--C--C
Q 044482 179 ELKKLVDVASCLGA--NMSLIV-NTYPQITGINFDL-PYVIKNAP-------C--VEHVEGDMFVN---V--PS--G--Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~--~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~-------r--i~~~~gd~~~~---~--p~--~--D 236 (345)
+...+||||||.-+ ..-+++ +..|+.+++-+|. |-++..++ + ..++.+|+.++ + |. + |
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD 147 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD 147 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence 56789999999653 333444 4589999999999 77788776 4 78999999873 1 11 1 3
Q ss_pred -----EEEeccccccCCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 237 -----AIFTKSVLLNWSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 237 -----~i~~~~vlh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
.+++..+||+.+| ++...+++..+++|.| |+.|.|. ....+..+ .. .....+.+-.... ....|
T Consensus 148 ~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lap---GS~L~is-h~t~d~~p---~~--~~~~~~~~~~~~~-~~~~R 217 (267)
T PF04672_consen 148 FDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAP---GSYLAIS-HATDDGAP---ER--AEALEAVYAQAGS-PGRPR 217 (267)
T ss_dssp TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-T---T-EEEEE-EEB-TTSH---HH--HHHHHHHHHHCCS-----B
T ss_pred CCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCC---CceEEEE-ecCCCCCH---HH--HHHHHHHHHcCCC-Cceec
Confidence 6899999999988 6788999999999999 9988888 54432221 11 1112222222222 46789
Q ss_pred CHHHHHHHHHHCCCCceE
Q 044482 311 TAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~ 328 (345)
|.+|+.++|. ||+.++
T Consensus 218 s~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 218 SREEIAAFFD--GLELVE 233 (267)
T ss_dssp -HHHHHHCCT--TSEE-T
T ss_pred CHHHHHHHcC--CCccCC
Confidence 9999999998 887653
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-07 Score=78.56 Aligned_cols=97 Identities=19% Similarity=0.270 Sum_probs=72.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~- 234 (345)
...+++.++ .....+|||||||+|+++..++... +.-+++.+|. |.+++.|+ +++++.+|....++.
T Consensus 61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence 346778887 8888999999999999999999874 4457889998 88777776 789999998876663
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |.|++.......+. .+.+.|++ ||++++-
T Consensus 140 apfD~I~v~~a~~~ip~--------~l~~qL~~---gGrLV~p 171 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIPE--------ALLEQLKP---GGRLVAP 171 (209)
T ss_dssp -SEEEEEESSBBSS--H--------HHHHTEEE---EEEEEEE
T ss_pred CCcCEEEEeeccchHHH--------HHHHhcCC---CcEEEEE
Confidence 3 99999888754433 35567899 9999886
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=84.97 Aligned_cols=105 Identities=14% Similarity=0.147 Sum_probs=77.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcC---CCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVN---VPS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~---~p~-~ 235 (345)
.++..++ .....+|||+|||+|..+..+++..++.+++++|. +.+++.++ +++++.+|+.+. .+. .
T Consensus 235 ~~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~ 313 (427)
T PRK10901 235 LAATLLA-PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQP 313 (427)
T ss_pred HHHHHcC-CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCC
Confidence 3445555 45668999999999999999999998789999999 78877665 467899998762 222 2
Q ss_pred -CEEEecc------ccc-------cCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 236 -QAIFTKS------VLL-------NWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 236 -D~i~~~~------vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
|.|++.- ++. .+..++ ..++|+++.+.|+| ||++++. ..
T Consensus 314 fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~Lkp---GG~lvys-tc 373 (427)
T PRK10901 314 FDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKP---GGTLLYA-TC 373 (427)
T ss_pred CCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eC
Confidence 9998422 111 122221 24799999999999 9999988 54
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.3e-06 Score=73.49 Aligned_cols=95 Identities=14% Similarity=0.224 Sum_probs=77.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~ 235 (345)
...+++.+. .+...+||+||||+|+.+.-+++.-- +++.+|. ++..+.|+ +|.++.||-..-+|+ +
T Consensus 61 vA~m~~~L~-~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 61 VARMLQLLE-LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred HHHHHHHhC-CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 345677777 88889999999999999999998765 7888887 77777776 799999999887774 4
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++....-..|+. ..+.|+| ||++++-
T Consensus 138 PyD~I~Vtaaa~~vP~~--------Ll~QL~~---gGrlv~P 168 (209)
T COG2518 138 PYDRIIVTAAAPEVPEA--------LLDQLKP---GGRLVIP 168 (209)
T ss_pred CcCEEEEeeccCCCCHH--------HHHhccc---CCEEEEE
Confidence 999998877655553 4568999 9999988
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.7e-06 Score=82.47 Aligned_cols=108 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C----ceEEeccCCc-CC--CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C----VEHVEGDMFV-NV--PS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r----i~~~~gd~~~-~~--p~ 234 (345)
.++..++ .....+|||+|||+|..+..+++..++.+++++|. +++++.++ + +.+..+|... +. +.
T Consensus 229 ~~~~~L~-~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~ 307 (426)
T TIGR00563 229 WVATWLA-PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAEN 307 (426)
T ss_pred HHHHHhC-CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccc
Confidence 3445555 55568999999999999999999988789999999 77777655 2 3336677665 22 22
Q ss_pred -C-CEEEec------cccccCCh-------hH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 235 -G-QAIFTK------SVLLNWSD-------EQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 235 -~-D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
. |.|++- .+++..++ ++ ..++|+++++.|+| ||++++. ..-..
T Consensus 308 ~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~Lkp---gG~lvys-tcs~~ 372 (426)
T TIGR00563 308 EQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKT---GGTLVYA-TCSVL 372 (426)
T ss_pred cccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCCC
Confidence 2 999862 45655443 11 25799999999999 9999988 55543
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.9e-06 Score=70.28 Aligned_cols=119 Identities=19% Similarity=0.154 Sum_probs=91.3
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCc-CCCC---C--CEEEeccccccCChh-HHH
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFV-NVPS---G--QAIFTKSVLLNWSDE-QCL 253 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~-~~~ 253 (345)
-++|||||=+...... .++-..++-+|+.+ +.-.+.+.||++ |+|. . |+|.++-||-..+++ +.-
T Consensus 53 lrlLEVGals~~N~~s---~~~~fdvt~IDLns-----~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG 124 (219)
T PF11968_consen 53 LRLLEVGALSTDNACS---TSGWFDVTRIDLNS-----QHPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRG 124 (219)
T ss_pred ceEEeecccCCCCccc---ccCceeeEEeecCC-----CCCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHH
Confidence 5899999976654433 45667799999843 123457899999 8882 2 999999999999865 566
Q ss_pred HHHHHHHhhCCCCCCCcE-----EEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 254 KILKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~-----lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
++|+++++.|+| +|. ++|+ +|.. +.. |.+-.+.+.|.++++.-||..++
T Consensus 125 ~Ml~r~~~fL~~---~g~~~~~~LFlV----lP~~------------------Cv~-NSRy~~~~~l~~im~~LGf~~~~ 178 (219)
T PF11968_consen 125 EMLRRAHKFLKP---PGLSLFPSLFLV----LPLP------------------CVT-NSRYMTEERLREIMESLGFTRVK 178 (219)
T ss_pred HHHHHHHHHhCC---CCccCcceEEEE----eCch------------------Hhh-cccccCHHHHHHHHHhCCcEEEE
Confidence 899999999999 888 7777 2221 122 67777899999999999999988
Q ss_pred EEecC
Q 044482 329 VICRS 333 (345)
Q Consensus 329 ~~~~~ 333 (345)
.....
T Consensus 179 ~~~~~ 183 (219)
T PF11968_consen 179 YKKSK 183 (219)
T ss_pred EEecC
Confidence 76554
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.3e-06 Score=74.75 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=72.6
Q ss_pred HHHHhccCccc--ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C--ceEEeccCCcCCC--CC--CE
Q 044482 169 KILEIYKGFKE--LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--C--VEHVEGDMFVNVP--SG--QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~--~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r--i~~~~gd~~~~~p--~~--D~ 237 (345)
..++.++ ++. ..-|||||||+|..+..+.+. +-..+++|+ |+|++.|. . -.++-+||-+.+| +| |.
T Consensus 39 RaLELLa-lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~GlpfrpGtFDg 115 (270)
T KOG1541|consen 39 RALELLA-LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEGLPFRPGTFDG 115 (270)
T ss_pred HHHHHhh-CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCCCCCCCCccce
Confidence 3444444 444 577999999999999887765 357899999 99999887 3 3477888888444 55 87
Q ss_pred EEecccc----c-----cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVL----L-----NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vl----h-----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++....+ | |-+......++..++..|++ |++.+.-
T Consensus 116 ~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~r---g~raV~Q 159 (270)
T KOG1541|consen 116 VISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKR---GARAVLQ 159 (270)
T ss_pred EEEeeeeeeecccCccccChHHHHHHHhhhhhhhhcc---CceeEEE
Confidence 7665444 2 22333445678889999999 8987765
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.8e-06 Score=84.09 Aligned_cols=105 Identities=16% Similarity=0.125 Sum_probs=76.0
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPSG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~~ 235 (345)
+...++ ..+..+|||+|||+|..+..+++.. |+.+++++|+ +.+++.++ +++++.+|+.+. ++..
T Consensus 242 v~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~ 320 (444)
T PRK14902 242 VAPALD-PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEK 320 (444)
T ss_pred HHHHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhccc
Confidence 344454 4556789999999999999999986 6789999999 77776554 578999998762 3333
Q ss_pred -CEEEecc------cccc-------CChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 -QAIFTKS------VLLN-------WSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 -D~i~~~~------vlh~-------~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++.- ++.+ ++..+ ...+|+++.+.|+| ||+++.. ...
T Consensus 321 fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvys-tcs 381 (444)
T PRK14902 321 FDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKK---GGILVYS-TCT 381 (444)
T ss_pred CCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEE-cCC
Confidence 9998742 1111 12222 24689999999999 9998876 443
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=4.6e-06 Score=81.30 Aligned_cols=100 Identities=17% Similarity=0.226 Sum_probs=74.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEec--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTK-- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~-- 241 (345)
.....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+..++ . |+|++-
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEEcCC
Confidence 44557899999999999999988754 468999999 77777665 578999998773343 3 999862
Q ss_pred ----ccc-------ccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 ----SVL-------LNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ----~vl-------h~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.++ +.++.++. .++|+++.+.|+| ||+++.. ....
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvys-tcs~ 380 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKP---GGVLVYA-TCSI 380 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCC
Confidence 111 23343332 3699999999999 9999988 6544
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=2e-06 Score=85.34 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=70.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC----------------CceEEeccCCcC---CCCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP----------------CVEHVEGDMFVN---VPSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~---~p~~- 235 (345)
++.++|||||||+|..+..+++ +|. .+++.+|+ |+|++.++ |++++.+|..+. .++.
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~f 374 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKF 374 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCC
Confidence 3567999999999999999996 565 68999999 88877543 688899998872 2334
Q ss_pred CEEEeccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...-...+.. -..++++++++.|+| ||.+++.
T Consensus 375 DvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~p---gG~lv~~ 414 (521)
T PRK03612 375 DVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAP---DGLLVVQ 414 (521)
T ss_pred CEEEEeCCCCCCcchhccchHHHHHHHHHhcCC---CeEEEEe
Confidence 999887433221111 013589999999999 9988776
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.5e-06 Score=73.97 Aligned_cols=86 Identities=12% Similarity=0.100 Sum_probs=65.4
Q ss_pred ccceEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEeccccccCC-
Q 044482 180 LKKLVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWS- 248 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~- 248 (345)
..+|||+|||+|.++..++++. +..+++++|+ +.+++.|+ ++.++.+|++. +.... |+|+++=-.+...
T Consensus 50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsNPPY~~~~~ 129 (241)
T PHA03412 50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISNPPFGKIKT 129 (241)
T ss_pred CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEECCCCCCccc
Confidence 4699999999999999999875 3578999999 78888877 68999999987 43333 9999875544222
Q ss_pred -h--------hHHHHHHHHHHhhCCC
Q 044482 249 -D--------EQCLKILKNCYDALPK 265 (345)
Q Consensus 249 -d--------~~~~~iL~~~~~aL~p 265 (345)
+ .-...+++++.+.+++
T Consensus 130 ~d~~ar~~g~~~~~~li~~A~~Ll~~ 155 (241)
T PHA03412 130 SDFKGKYTGAEFEYKVIERASQIARQ 155 (241)
T ss_pred cccCCcccccHHHHHHHHHHHHHcCC
Confidence 1 1234688899886666
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.1e-06 Score=74.41 Aligned_cols=134 Identities=13% Similarity=0.187 Sum_probs=86.0
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-C--------CceEEeccCCc---CCC-CC--CEEEecccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-P--------CVEHVEGDMFV---NVP-SG--QAIFTKSVL 244 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-~--------ri~~~~gd~~~---~~p-~~--D~i~~~~vl 244 (345)
..+||||||.|.+...+|+++|+..++++++ ..++..+ + ++.++.+|+.+ .++ .+ |-|++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~--- 126 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN--- 126 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE---
Confidence 5799999999999999999999999999998 3333322 2 67888898876 233 43 555543
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh-hhhccc----hhhhhh-----
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR-NILTLD----IVMYDL----- 303 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~-~~~~~d----~~~~~~----- 303 (345)
|||+ -....|+.+.+.|+| ||.|.+.+|. ++ ...+ ...... +.....
T Consensus 127 --FPDPWpKkRH~KRRl~~~~fl~~~a~~Lk~---gG~l~~aTD~------~~-y~e~~~~~~~~~~~~~~~~~~~~~~~ 194 (227)
T COG0220 127 --FPDPWPKKRHHKRRLTQPEFLKLYARKLKP---GGVLHFATDN------EE-YFEWMMLEVLEHPPFLKFESEDLHYN 194 (227)
T ss_pred --CCCCCCCccccccccCCHHHHHHHHHHccC---CCEEEEEecC------HH-HHHHHHHHHHhcchhhhccccccccc
Confidence 4444 124689999999999 9999888221 11 1111 000000 000000
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
......+...+|++.....|-.+.+.
T Consensus 195 ~~~~~~~~~T~yE~k~~~~g~~i~~l 220 (227)
T COG0220 195 LPPPDNNPVTEYEQKFRRLGHPVYDL 220 (227)
T ss_pred cccccCCCCcHHHHHHHhCCCceEEE
Confidence 11223466788999999999776554
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.27 E-value=7.1e-06 Score=86.47 Aligned_cols=61 Identities=20% Similarity=0.172 Sum_probs=51.0
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------------CceEEeccCCcCCCC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------------ri~~~~gd~~~~~p~ 234 (345)
.+|||||||+|..+..+++++|+.+++++|+ |.+++.|+ |++|+.+|+++..+.
T Consensus 120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~ 199 (1082)
T PLN02672 120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD 199 (1082)
T ss_pred CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence 5899999999999999999999999999999 77766552 589999999985542
Q ss_pred ---C-CEEEec
Q 044482 235 ---G-QAIFTK 241 (345)
Q Consensus 235 ---~-D~i~~~ 241 (345)
. |+|+.+
T Consensus 200 ~~~~fDlIVSN 210 (1082)
T PLN02672 200 NNIELDRIVGC 210 (1082)
T ss_pred cCCceEEEEEC
Confidence 2 887764
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.27 E-value=3.5e-06 Score=78.44 Aligned_cols=93 Identities=18% Similarity=0.183 Sum_probs=68.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------CceEEeccCCc-C----CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------CVEHVEGDMFV-N----VP 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------ri~~~~gd~~~-~----~p 233 (345)
...+|||+|||.|.-+....+..+ ...+++|+ +..|+.|+ ...|+.+|.+. . ++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i-~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKI-KHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCC-CEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 567999999999998887777643 36899999 55566554 34568888875 2 22
Q ss_pred -C--C-CEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 -S--G-QAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 -~--~-D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|-|...||+. +.+.+..+|+++.+.|+| ||.+|..
T Consensus 141 ~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~---GG~FIgT 185 (331)
T PF03291_consen 141 PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKP---GGYFIGT 185 (331)
T ss_dssp STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 3 2 999999999973 555677799999999999 9988765
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=4e-06 Score=81.49 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=77.6
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C----CC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N----VP 233 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~----~p 233 (345)
+...++ .....+|||+|||+|..+..+++..+ ..+++++|. +++++.++ +++++.+|+.+ + .+
T Consensus 244 ~~~~l~-~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~ 322 (434)
T PRK14901 244 VAPLLD-PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQW 322 (434)
T ss_pred HHHHhC-CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccc
Confidence 334454 45568999999999999999999854 568999998 77776654 57889999876 3 22
Q ss_pred C-C-CEEEec------cccccCCh-------hH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 S-G-QAIFTK------SVLLNWSD-------EQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 ~-~-D~i~~~------~vlh~~~d-------~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
. . |.|++. .++++.++ ++ -.++|+++.+.||| ||+++.. +...
T Consensus 323 ~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkp---gG~lvys-tcsi 387 (434)
T PRK14901 323 RGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKP---GGTLVYA-TCTL 387 (434)
T ss_pred cccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eCCC
Confidence 2 2 999873 34544333 21 25899999999999 9999887 5443
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.23 E-value=4.4e-06 Score=75.27 Aligned_cols=88 Identities=17% Similarity=0.254 Sum_probs=62.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSGQ- 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~D- 236 (345)
...+++..+ ..+..+|||||||+|.++..++++.+. ++++|. +.+++.++ +++++.+|+.+ +++..|
T Consensus 18 ~~~i~~~~~-~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~~~~d~ 94 (253)
T TIGR00755 18 IQKIVEAAN-VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDLPDFPK 94 (253)
T ss_pred HHHHHHhcC-CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCChhHcCC
Confidence 445666666 667789999999999999999999875 788887 66665544 68899999988 555323
Q ss_pred -EEEeccccccCChhHHHHHHHHHHh
Q 044482 237 -AIFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 237 -~i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
.++++|.-++++.+ ++.++..
T Consensus 95 ~~~vvsNlPy~i~~~----il~~ll~ 116 (253)
T TIGR00755 95 QLKVVSNLPYNISSP----LIFKLLE 116 (253)
T ss_pred cceEEEcCChhhHHH----HHHHHhc
Confidence 45555555555544 4555544
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.2e-05 Score=65.94 Aligned_cols=109 Identities=17% Similarity=0.243 Sum_probs=88.6
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-C--CC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-N--VP 233 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~--~p 233 (345)
+...++.+++.++ +.++.-|+++|.|+|.++.+++++ .++-..+.++. ++-..... .+++++||.+. . +.
T Consensus 33 Ss~lA~~M~s~I~-pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~~l~ 111 (194)
T COG3963 33 SSILARKMASVID-PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRTTLG 111 (194)
T ss_pred cHHHHHHHHhccC-cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHHHHh
Confidence 4456677888888 888889999999999999999987 45556777776 55544333 67899999987 3 22
Q ss_pred --CC---CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 --SG---QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 --~~---D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ |.|++.--+-.++-....++|.++...|++ ||.++..
T Consensus 112 e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~---gg~lvqf 155 (194)
T COG3963 112 EHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPA---GGPLVQF 155 (194)
T ss_pred hcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCC---CCeEEEE
Confidence 22 999999999999999999999999999999 9988888
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.1e-05 Score=78.62 Aligned_cols=97 Identities=9% Similarity=0.106 Sum_probs=66.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC----
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV---- 232 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~---- 232 (345)
...+++.++ .....+|||+|||+|.++..+++.. .+++++|. +++++.|+ +++++.+|+.+.+
T Consensus 286 ~~~vl~~l~-~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~ 362 (443)
T PRK13168 286 VARALEWLD-PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQP 362 (443)
T ss_pred HHHHHHHhc-CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhh
Confidence 344455554 4455799999999999999999886 57999999 78887665 6899999987522
Q ss_pred -CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 -PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 -p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++ |+|++.-- -.....+++.+.+ ++| ++.++|.
T Consensus 363 ~~~~~fD~Vi~dPP-----r~g~~~~~~~l~~-~~~---~~ivyvS 399 (443)
T PRK13168 363 WALGGFDKVLLDPP-----RAGAAEVMQALAK-LGP---KRIVYVS 399 (443)
T ss_pred hhcCCCCEEEECcC-----CcChHHHHHHHHh-cCC---CeEEEEE
Confidence 222 88876421 1112344554544 688 6666666
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.18 E-value=5.4e-06 Score=75.49 Aligned_cols=79 Identities=11% Similarity=0.165 Sum_probs=57.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D 236 (345)
...+++.++ .....+|||||||+|.++..++++.+ +++++|. +.+++.++ +++++.+|+.+ ++++- +
T Consensus 31 ~~~i~~~l~-~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~ 107 (272)
T PRK00274 31 LDKIVDAAG-PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLSELQPL 107 (272)
T ss_pred HHHHHHhcC-CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHHHcCcc
Confidence 345666666 66778999999999999999999976 7888888 77777654 78999999987 54432 4
Q ss_pred EEEeccccccCCh
Q 044482 237 AIFTKSVLLNWSD 249 (345)
Q Consensus 237 ~i~~~~vlh~~~d 249 (345)
.|+ .|.=++.+.
T Consensus 108 ~vv-~NlPY~iss 119 (272)
T PRK00274 108 KVV-ANLPYNITT 119 (272)
T ss_pred eEE-EeCCccchH
Confidence 443 444444443
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.1e-06 Score=79.96 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=75.0
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C-CC-CC-
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N-VP-SG- 235 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~-~p-~~- 235 (345)
...++ .....+|||+|||+|..+..+++.. ++.+++.+|+ +.+++.++ +++++.+|..+ + .. ..
T Consensus 230 ~~~l~-~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~f 308 (431)
T PRK14903 230 PLLME-LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTF 308 (431)
T ss_pred HHHhC-CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccC
Confidence 33444 5566799999999999999999886 5679999999 77777655 47888999876 2 22 23
Q ss_pred CEEEec------cccc-------cCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTK------SVLL-------NWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~------~vlh-------~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|.|++. .++. .++.++ -.++|.++++.|+| ||.++.. ....
T Consensus 309 D~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYs-TCs~ 369 (431)
T PRK14903 309 DRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEK---GGILLYS-TCTV 369 (431)
T ss_pred CEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ECCC
Confidence 998862 1222 223222 25789999999999 9988777 5443
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.17 E-value=1.3e-05 Score=74.05 Aligned_cols=109 Identities=12% Similarity=0.076 Sum_probs=79.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC----CCeEEEeeh-hhHhhhCC-----------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP----QITGINFDL-PYVIKNAP-----------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~ 230 (345)
...|++.++ ...+|||+|||+|.-+..|+++.. ..+.+.+|+ .+.++.+. .|.-+.|||.+
T Consensus 67 ~~~Ia~~i~---~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~ 143 (319)
T TIGR03439 67 SSDIAASIP---SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDD 143 (319)
T ss_pred HHHHHHhcC---CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHH
Confidence 446666654 445899999999998877776653 467899999 44554332 34447889866
Q ss_pred C---CC-----CC--CEEEeccccccCChhHHHHHHHHHHh-hCCCCCCCcEEEEEeccCCC
Q 044482 231 N---VP-----SG--QAIFTKSVLLNWSDEQCLKILKNCYD-ALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 231 ~---~p-----~~--D~i~~~~vlh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~~d~~~~ 281 (345)
. +| .. -++++.+.+.+++++++..+|+++++ .|+| |+.++|--|.+.+
T Consensus 144 ~l~~l~~~~~~~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~---~d~lLiG~D~~k~ 202 (319)
T TIGR03439 144 GLAWLKRPENRSRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSP---SDSFLIGLDGCKD 202 (319)
T ss_pred HHhhcccccccCCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCC---CCEEEEecCCCCC
Confidence 2 22 12 45666789999999999999999999 9999 8888885255433
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.2e-06 Score=73.38 Aligned_cols=81 Identities=16% Similarity=0.219 Sum_probs=60.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCCCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSGQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~D~ 237 (345)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++.|.
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~~~~d~ 94 (258)
T PRK14896 18 VDRIVEYAE-DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDLPEFNK 94 (258)
T ss_pred HHHHHHhcC-CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCchhceE
Confidence 445666665 5667899999999999999999984 47899998 66766554 68999999988 6655577
Q ss_pred EEeccccccCChhH
Q 044482 238 IFTKSVLLNWSDEQ 251 (345)
Q Consensus 238 i~~~~vlh~~~d~~ 251 (345)
|+.+ .-++++.+.
T Consensus 95 Vv~N-lPy~i~s~~ 107 (258)
T PRK14896 95 VVSN-LPYQISSPI 107 (258)
T ss_pred EEEc-CCcccCcHH
Confidence 7654 444555443
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.15 E-value=2e-05 Score=71.42 Aligned_cols=100 Identities=20% Similarity=0.213 Sum_probs=72.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC--CCCEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP--SGQAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p--~~D~i~~~~ 242 (345)
.....+|||+|||+|..+..+++..+ ...++.+|. +.+++.++ +++++.+|... +.+ ..|+|++.-
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~D~ 148 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILLDA 148 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEEcC
Confidence 34567899999999999999998875 358999999 77776554 57888888755 222 239888621
Q ss_pred ------cc-------ccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 243 ------VL-------LNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 243 ------vl-------h~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
++ ..|+++.. .++|+++.+.|+| ||+|+.. ....
T Consensus 149 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkp---gG~lvYs-tcs~ 202 (264)
T TIGR00446 149 PCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKP---GGVLVYS-TCSL 202 (264)
T ss_pred CCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-eCCC
Confidence 22 12444332 4699999999999 9998777 5443
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.4e-05 Score=68.83 Aligned_cols=107 Identities=20% Similarity=0.222 Sum_probs=84.3
Q ss_pred HHHHhhHHH----HHHHHHhccCcccccceEEecCCccHHHHHHHH-HCCCCeEEEeeh-hhHhhhCC----------Cc
Q 044482 158 SMQNHTAIV----MKKILEIYKGFKELKKLVDVASCLGANMSLIVN-TYPQITGINFDL-PYVIKNAP----------CV 221 (345)
Q Consensus 158 ~m~~~~~~~----~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~-~~p~~~~~~~Dl-p~~i~~a~----------ri 221 (345)
.|...++.. +.-|+...+ .....+|+|.|-|+|.++..|+. ..|..+++.+|. ++..+.|+ ++
T Consensus 70 ~~~R~tQiIyPKD~~~I~~~~g-i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v 148 (256)
T COG2519 70 SMKRRTQIIYPKDAGYIVARLG-ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRV 148 (256)
T ss_pred hCcCCCceecCCCHHHHHHHcC-CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccce
Confidence 355544432 345666666 88889999999999999999997 578889999998 66676665 58
Q ss_pred eEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 222 EHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 222 ~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+..+|+.+ ..++. |++++ +.+++. +.+.++.++|+| ||.+++.
T Consensus 149 ~~~~~Dv~~~~~~~~vDav~L-----Dmp~PW--~~le~~~~~Lkp---gg~~~~y 194 (256)
T COG2519 149 TLKLGDVREGIDEEDVDAVFL-----DLPDPW--NVLEHVSDALKP---GGVVVVY 194 (256)
T ss_pred EEEeccccccccccccCEEEE-----cCCChH--HHHHHHHHHhCC---CcEEEEE
Confidence 888999988 34444 87765 678775 789999999999 9999888
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=7.1e-06 Score=73.09 Aligned_cols=90 Identities=17% Similarity=0.131 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEeccCCc-CCCC-C-CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEGDMFV-NVPS-G-QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d~~ 251 (345)
....++|+|||.|.+. ..+|.+-.++.|+ -..+..++ +. .....|+.+ |.++ . |..+...++|||+-..
T Consensus 45 ~gsv~~d~gCGngky~----~~~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL----GVNPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred CcceeeecccCCcccC----cCCCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccchhhhhhhhhhhHH
Confidence 4578999999999987 3468889999999 66777777 55 678899998 6663 3 9999999999998654
Q ss_pred -HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 -CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 -~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..++++++.+.++| ||..+|.
T Consensus 121 RR~~~l~e~~r~lrp---gg~~lvy 142 (293)
T KOG1331|consen 121 RRERALEELLRVLRP---GGNALVY 142 (293)
T ss_pred HHHHHHHHHHHHhcC---CCceEEE
Confidence 56799999999999 9986654
|
|
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.8e-05 Score=73.23 Aligned_cols=141 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEe----ccCCcCC--CCC--CEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVE----GDMFVNV--PSG--QAI 238 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~----gd~~~~~--p~~--D~i 238 (345)
...++||||||+|.....++.+.++.+++++|+ |..++.|+ +|++.. .++++.+ +.+ |+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 457899999999999999999999999999999 77777665 455543 3444432 332 999
Q ss_pred EeccccccCChhH---HHHHHHHHHh------hC----------CCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 239 FTKSVLLNWSDEQ---CLKILKNCYD------AL----------PKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 239 ~~~~vlh~~~d~~---~~~iL~~~~~------aL----------~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
+++=-+|.-..+. ..+-.++.++ .| -+ ||.+-++ ..+..+.. .......+
T Consensus 194 vcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~---GGe~~fi-~~mi~eS~------~~~~~~gw- 262 (321)
T PRK11727 194 LCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCE---GGEVAFI-KRMIEESK------AFAKQVLW- 262 (321)
T ss_pred EeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeC---CcEeeee-hHhhHHHH------HHHhhCcE-
Confidence 9998887644432 2222333321 22 24 6655555 33333220 01111111
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
..++ =|+.-+...+.+.|++.|.+.++++..
T Consensus 263 ftsm--v~kk~~l~~l~~~L~~~~~~~~~~~e~ 293 (321)
T PRK11727 263 FTSL--VSKKENLPPLYRALKKVGAVEVKTIEM 293 (321)
T ss_pred EEEE--eeccCCHHHHHHHHHHcCCceEEEEEE
Confidence 1122 244558999999999999988888776
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=70.02 Aligned_cols=100 Identities=16% Similarity=0.172 Sum_probs=73.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.-.+|.+ +.|||||||+|.++.-.+++. ..++..++-.+|.+.|+ ||.+++|-+.+ ++|+. |
T Consensus 168 Ail~N~sDF~~-kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~D 245 (517)
T KOG1500|consen 168 AILENHSDFQD-KIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVD 245 (517)
T ss_pred HHHhcccccCC-cEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCchhcc
Confidence 34443222554 679999999999988777664 34788999888887766 89999999998 99965 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+++.--.=..+-++...+-.-.+++-|+| .|+.+
T Consensus 246 viISEPMG~mL~NERMLEsYl~Ark~l~P---~GkMf 279 (517)
T KOG1500|consen 246 VIISEPMGYMLVNERMLESYLHARKWLKP---NGKMF 279 (517)
T ss_pred EEEeccchhhhhhHHHHHHHHHHHhhcCC---CCccc
Confidence 99876444444555555555567899999 77654
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.99 E-value=4e-05 Score=69.76 Aligned_cols=106 Identities=12% Similarity=0.206 Sum_probs=74.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC-------CceE--EeccCCc---CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP-------CVEH--VEGDMFV---NVP 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~-------ri~~--~~gd~~~---~~p 233 (345)
.++....++|. +.+|||+|+|.|..+-+..+.+|.+ +++++|. +.+++.++ .... ...++.. +++
T Consensus 23 ~El~~r~p~f~-P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 101 (274)
T PF09243_consen 23 SELRKRLPDFR-PRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFP 101 (274)
T ss_pred HHHHHhCcCCC-CceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCC
Confidence 34444444333 4789999999999999999988864 5789998 77777655 1110 1122221 233
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
..|+|+++|+|-.+++++...+++++.+.+.+ .|+|+ |.=.
T Consensus 102 ~~DLvi~s~~L~EL~~~~r~~lv~~LW~~~~~-----~LVlV-EpGt 142 (274)
T PF09243_consen 102 PDDLVIASYVLNELPSAARAELVRSLWNKTAP-----VLVLV-EPGT 142 (274)
T ss_pred CCcEEEEehhhhcCCchHHHHHHHHHHHhccC-----cEEEE-cCCC
Confidence 34999999999999998888899998887665 78888 6533
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-05 Score=60.14 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=68.5
Q ss_pred HHHHhccCcccccceEEecCCccH-HHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCC---CC-CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGA-NMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVP---SG-QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p---~~-D~i~~ 240 (345)
.+.+.++ -....+++|||||+|. .+..|.+. +..++++|. |..++.++ .++++.+|.|++-+ .+ |+|+.
T Consensus 7 ~l~~~~~-~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liys 83 (134)
T PRK04148 7 FIAENYE-KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYS 83 (134)
T ss_pred HHHHhcc-cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEE
Confidence 3455555 3344789999999996 77777754 468999999 77787777 78999999999544 34 98887
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ++.+...-+.++++...- -++|.
T Consensus 84 ir-----pp~el~~~~~~la~~~~~-----~~~i~ 108 (134)
T PRK04148 84 IR-----PPRDLQPFILELAKKINV-----PLIIK 108 (134)
T ss_pred eC-----CCHHHHHHHHHHHHHcCC-----CEEEE
Confidence 64 456666777777777665 46665
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.8e-05 Score=68.83 Aligned_cols=94 Identities=16% Similarity=0.127 Sum_probs=71.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-hhhCC---------------CceEEeccCCc-C----C--C-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-IKNAP---------------CVEHVEGDMFV-N----V--P- 233 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-i~~a~---------------ri~~~~gd~~~-~----~--p- 233 (345)
+....++|+|||-|.-++..-++-- -..+++|+.+| |++|+ ...|+.+|-+. . + +
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~d 194 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKD 194 (389)
T ss_pred ccccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCC
Confidence 4456899999999998877665532 25899999665 77776 25788998875 1 2 2
Q ss_pred C-CCEEEecccccc-C-ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-GQAIFTKSVLLN-W-SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. -|+|-|..++|+ | +.+.+..+|+++.+.|+| ||.+|=.
T Consensus 195 p~fDivScQF~~HYaFetee~ar~~l~Nva~~Lkp---GG~FIgT 236 (389)
T KOG1975|consen 195 PRFDIVSCQFAFHYAFETEESARIALRNVAKCLKP---GGVFIGT 236 (389)
T ss_pred CCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCC---CcEEEEe
Confidence 2 399999999996 4 456688899999999999 9866544
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.2e-05 Score=68.13 Aligned_cols=93 Identities=16% Similarity=0.315 Sum_probs=70.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------SG-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~~-- 235 (345)
..++++||+||+++|..+..+++..| +.+++.+|. |+..+.|+ ||+++.||..+.++ .+
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~f 122 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQF 122 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSE
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCce
Confidence 44668999999999999999999987 589999998 76666664 89999999976222 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+||+-. +..+-...+..+.+.|+| || ++|+ |.+
T Consensus 123 D~VFiDa-----~K~~y~~y~~~~~~ll~~---gg-vii~-DN~ 156 (205)
T PF01596_consen 123 DFVFIDA-----DKRNYLEYFEKALPLLRP---GG-VIIA-DNV 156 (205)
T ss_dssp EEEEEES-----TGGGHHHHHHHHHHHEEE---EE-EEEE-ETT
T ss_pred eEEEEcc-----cccchhhHHHHHhhhccC---Ce-EEEE-ccc
Confidence 9998864 345557789999999999 76 5555 443
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.7e-05 Score=70.56 Aligned_cols=86 Identities=19% Similarity=0.281 Sum_probs=62.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++..+ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+|+++ +++.
T Consensus 25 ~~~Iv~~~~-~~~~~~VLEIG~G~G~LT~~Ll~~~~--~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~~~ 101 (294)
T PTZ00338 25 LDKIVEKAA-IKPTDTVLEIGPGTGNLTEKLLQLAK--KVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEFPY 101 (294)
T ss_pred HHHHHHhcC-CCCcCEEEEecCchHHHHHHHHHhCC--cEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcccc
Confidence 345666666 66678999999999999999998754 5788888 66665433 68999999988 5554
Q ss_pred CCEEEeccccccCChhHHHHHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL 256 (345)
-|+++ .+.=++++.+...++|
T Consensus 102 ~d~Vv-aNlPY~Istpil~~ll 122 (294)
T PTZ00338 102 FDVCV-ANVPYQISSPLVFKLL 122 (294)
T ss_pred cCEEE-ecCCcccCcHHHHHHH
Confidence 47665 4555666666555555
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=4.9e-05 Score=65.72 Aligned_cols=90 Identities=10% Similarity=0.015 Sum_probs=60.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~--~D~i~~~~vl 244 (345)
...+|||+|||+|.++..++.+.. .+++.+|. +..++.++ +++++.+|+++.++ . .|+|++.=-.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy 131 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPF 131 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCC
Confidence 346899999999999997666553 58999998 66666444 68899999987332 2 2999887553
Q ss_pred ccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
+.--. ..+++.+.+ .|.| ++.++|-
T Consensus 132 ~~g~~---~~~l~~l~~~~~l~~---~~iv~ve 158 (199)
T PRK10909 132 RKGLL---EETINLLEDNGWLAD---EALIYVE 158 (199)
T ss_pred CCChH---HHHHHHHHHCCCcCC---CcEEEEE
Confidence 32112 234444444 3788 6644444
|
|
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.93 E-value=6.1e-05 Score=68.22 Aligned_cols=91 Identities=10% Similarity=0.060 Sum_probs=70.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--------CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--------SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--------~~- 235 (345)
..+.++|||||+++|..+..+++..| +.+++.+|. |+..+.|+ +|+++.||+.+.++ ..
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 45678999999999999999999876 568899998 66666665 79999999977322 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+||+-. +..+-...+..+.+.|+| ||.|++-
T Consensus 196 D~VFIDa-----~K~~Y~~y~e~~l~lL~~---GGvIV~D 227 (278)
T PLN02476 196 DFAFVDA-----DKRMYQDYFELLLQLVRV---GGVIVMD 227 (278)
T ss_pred CEEEECC-----CHHHHHHHHHHHHHhcCC---CcEEEEe
Confidence 8888753 355667889999999999 8765443
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.7e-05 Score=76.95 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=66.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEecccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFTKSVL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~~~vl 244 (345)
...+||||||.|.++..+++++|+..++++|. +.+....+ ++.++.+|+.. .+|++ |.|++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~--- 424 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL--- 424 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE---
Confidence 46799999999999999999999999999998 33322222 67778777632 45544 666654
Q ss_pred ccCChh-----------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDE-----------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~-----------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|||+ -....|+.+++.|+| ||.|.+.
T Consensus 425 --FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~---gG~i~~~ 461 (506)
T PRK01544 425 --FPDPWIKNKQKKKRIFNKERLKILQDKLKD---NGNLVFA 461 (506)
T ss_pred --CCCCCCCCCCccccccCHHHHHHHHHhcCC---CCEEEEE
Confidence 3333 124789999999999 9999988
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.9e-05 Score=67.71 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=72.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p 233 (345)
+..|+..++ ...+.+||+.|-|+|.++..|++. .|.-+++-+|. ++-.+.|+ ++++..+|+.+ .++
T Consensus 29 ~~~I~~~l~-i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~ 107 (247)
T PF08704_consen 29 ISYILMRLD-IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFD 107 (247)
T ss_dssp HHHHHHHTT---TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--S
T ss_pred HHHHHHHcC-CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccccc
Confidence 345677777 888899999999999999999975 78899999998 66666555 68999999975 343
Q ss_pred ----CC-CEEEeccccccCChhHHHHHHHHHHhhC-CCCCCCcEEEEE
Q 044482 234 ----SG-QAIFTKSVLLNWSDEQCLKILKNCYDAL-PKSRKHGRTQLR 275 (345)
Q Consensus 234 ----~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL-~p~~~gG~lli~ 275 (345)
.. |+|++ |++++. ..+.++.++| +| ||+|++.
T Consensus 108 ~~~~~~~DavfL-----Dlp~Pw--~~i~~~~~~L~~~---gG~i~~f 145 (247)
T PF08704_consen 108 EELESDFDAVFL-----DLPDPW--EAIPHAKRALKKP---GGRICCF 145 (247)
T ss_dssp TT-TTSEEEEEE-----ESSSGG--GGHHHHHHHE-EE---EEEEEEE
T ss_pred ccccCcccEEEE-----eCCCHH--HHHHHHHHHHhcC---CceEEEE
Confidence 22 77765 677774 6799999999 89 9999888
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.87 E-value=3.6e-05 Score=65.19 Aligned_cols=93 Identities=14% Similarity=0.107 Sum_probs=62.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCcCC-----CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFVNV-----PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~-----p~-~-D~i 238 (345)
....+||+||||+|..++.+++..+..+++.-|.+++++..+ ++++...|.-++. .. . |+|
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~I 123 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDVI 123 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSEE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCEE
Confidence 355799999999999999999987778899999976665333 5677777765422 22 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.+.++++ ++....+++.+.+.|+| +|.+++.
T Consensus 124 lasDv~Y~--~~~~~~L~~tl~~ll~~---~~~vl~~ 155 (173)
T PF10294_consen 124 LASDVLYD--EELFEPLVRTLKRLLKP---NGKVLLA 155 (173)
T ss_dssp EEES--S---GGGHHHHHHHHHHHBTT----TTEEEE
T ss_pred EEecccch--HHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 99999975 56678899999999999 7777777
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.3e-05 Score=68.86 Aligned_cols=94 Identities=17% Similarity=0.166 Sum_probs=72.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC---CCCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN---VPSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~---~p~~-D~i~ 239 (345)
++.++||=||||.|.+++.+++..+.-+++.+|+ |.|++.++ |++++.+|..+- .+.. |+|+
T Consensus 75 ~~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi 154 (282)
T COG0421 75 PNPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVII 154 (282)
T ss_pred CCCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEE
Confidence 4457999999999999999999988889999999 99988766 889999998873 3333 9998
Q ss_pred eccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-..=.. ...+ -...++.|+++|++ +|.++..
T Consensus 155 ~D~tdp~-gp~~~Lft~eFy~~~~~~L~~---~Gi~v~q 189 (282)
T COG0421 155 VDSTDPV-GPAEALFTEEFYEGCRRALKE---DGIFVAQ 189 (282)
T ss_pred EcCCCCC-CcccccCCHHHHHHHHHhcCC---CcEEEEe
Confidence 7543221 1100 14789999999999 8865555
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.87 E-value=4.6e-05 Score=71.14 Aligned_cols=93 Identities=10% Similarity=-0.007 Sum_probs=68.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCC---CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVP---SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p---~~-D~i~~ 240 (345)
+.++||-||||.|..+..+++..+..+++++|+ |.+++.++ |++++.+|.++-+. +. |+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 557899999999999999998766678999999 88887665 78899999887332 23 99997
Q ss_pred ccccccCCh--hH---HHHHHH-HHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD--EQ---CLKILK-NCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d--~~---~~~iL~-~~~~aL~p~~~gG~lli~ 275 (345)
--. .-++. .. -...++ .+++.|+| ||.+++.
T Consensus 183 D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p---~Gvlv~q 219 (336)
T PLN02823 183 DLA-DPVEGGPCYQLYTKSFYERIVKPKLNP---GGIFVTQ 219 (336)
T ss_pred cCC-CccccCcchhhccHHHHHHHHHHhcCC---CcEEEEe
Confidence 621 11100 00 135777 89999999 9976554
|
|
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00012 Score=63.12 Aligned_cols=137 Identities=17% Similarity=0.150 Sum_probs=90.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~ 247 (345)
.+..++|||||-|+....+..+. --+.+..|. ..|++.++ ..+...+|-.. ++.+. |+++.+..+| |
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiisSlslH-W 149 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIISSLSLH-W 149 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhhhhhhh-h
Confidence 45689999999999999999886 236788898 67887766 45566677544 55543 9999999997 4
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC------CHHHHHHHHHH
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR------TAGEFKALAMA 321 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r------t~~e~~~ll~~ 321 (345)
.++- ..-+.+|..+||| +|.+ |. .++-.+.- . .......+.-+--. ||... -..+.-.+|..
T Consensus 150 ~NdL-Pg~m~~ck~~lKP---Dg~F-ia-smlggdTL----y-ELR~slqLAelER~-GGiSphiSPf~qvrDiG~LL~r 217 (325)
T KOG2940|consen 150 TNDL-PGSMIQCKLALKP---DGLF-IA-SMLGGDTL----Y-ELRCSLQLAELERE-GGISPHISPFTQVRDIGNLLTR 217 (325)
T ss_pred hccC-chHHHHHHHhcCC---Cccc-hh-HHhccccH----H-HHHHHhhHHHHHhc-cCCCCCcChhhhhhhhhhHHhh
Confidence 4432 5678999999999 8744 44 34333321 1 11222233333332 44221 24567889999
Q ss_pred CCCCceEE
Q 044482 322 AGFGTIKV 329 (345)
Q Consensus 322 aGf~~~~~ 329 (345)
|||....+
T Consensus 218 AGF~m~tv 225 (325)
T KOG2940|consen 218 AGFSMLTV 225 (325)
T ss_pred cCccccee
Confidence 99987655
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=97.84 E-value=5.8e-05 Score=73.20 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=74.1
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHC----CCCeEEEeeh-hhHh
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY----PQITGINFDL-PYVI 215 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~----p~~~~~~~Dl-p~~i 215 (345)
.|+.+++|+...+.|.+|+... ..+..+.-..-.....|+|||||+|-++...+++. -..+++.++- |..+
T Consensus 152 tYe~fE~D~vKY~~Ye~AI~~a----l~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~ 227 (448)
T PF05185_consen 152 TYEVFEKDPVKYDQYERAIEEA----LKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAV 227 (448)
T ss_dssp HHHHHCC-HHHHHHHHHHHHHH----HHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHH
T ss_pred cHhhHhcCHHHHHHHHHHHHHH----HHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHH
Confidence 4777788888777777775321 12222221101124679999999999987666543 4568899887 3221
Q ss_pred h-------hCC---CceEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcE
Q 044482 216 K-------NAP---CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGR 271 (345)
Q Consensus 216 ~-------~a~---ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~ 271 (345)
. .-. +|+++.+|+.+ ..|.. |+|+.-+.=.....|-....|-...+-|+| ||.
T Consensus 228 ~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSElLGsfg~nEl~pE~Lda~~rfLkp---~Gi 292 (448)
T PF05185_consen 228 VTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSELLGSFGDNELSPECLDAADRFLKP---DGI 292 (448)
T ss_dssp HHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE---BTTBTTTSHHHHHHHGGGGEEE---EEE
T ss_pred HHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEeccCCccccccCHHHHHHHHhhcCC---CCE
Confidence 1 111 89999999999 77754 998765442222233345668888899999 763
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.9e-05 Score=69.35 Aligned_cols=60 Identities=10% Similarity=0.013 Sum_probs=48.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC--C-CC-CEEEec
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV--P-SG-QAIFTK 241 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~--p-~~-D~i~~~ 241 (345)
..+|||+|||+|.++..++++ ..+++++|. +.+++.|+ +++|+.+|+.+.. + .. |+|++.
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 478999999999999999984 468999999 88887665 5899999997621 2 23 888876
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=7.7e-05 Score=76.72 Aligned_cols=93 Identities=11% Similarity=0.117 Sum_probs=67.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC---CCC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV---PSG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~---p~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++. ...+++.+|+ +.+++.++ +++++.+|+++.+ +.. |+|++.-
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDP 616 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDP 616 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECC
Confidence 4579999999999999999985 3347999999 77777665 5789999988732 223 9999841
Q ss_pred c--c------ccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 V--L------LNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 v--l------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- - ..+. ...-..+++.+.+.|+| ||.+++.
T Consensus 617 P~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~---gG~l~~~ 655 (702)
T PRK11783 617 PTFSNSKRMEDSFDVQRDHVALIKDAKRLLRP---GGTLYFS 655 (702)
T ss_pred CCCCCCCccchhhhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 1 0 0011 12235788999999999 9987766
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0002 Score=63.17 Aligned_cols=143 Identities=17% Similarity=0.074 Sum_probs=79.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhh-CC---Cce-EEeccCCc----CCC-C-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKN-AP---CVE-HVEGDMFV----NVP-S- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~-a~---ri~-~~~gd~~~----~~p-~- 234 (345)
...+++.++......++||+|||+|.++..++++ +-.+++++|. +.++.. .+ ++. +...|+.. .++ +
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d~ 141 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPDF 141 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCCc
Confidence 3455666551124568999999999999999986 4457999999 535442 32 433 23334432 111 1
Q ss_pred --CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 --GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 --~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
.|+.+++..+ +|..+.+.|+| +-.++++ .+-..-.+.. ........|- .......
T Consensus 142 ~~~DvsfiS~~~----------~l~~i~~~l~~---~~~~~L~-KPqFE~~~~~--~~~~giv~~~-------~~~~~~~ 198 (228)
T TIGR00478 142 ATFDVSFISLIS----------ILPELDLLLNP---NDLTLLF-KPQFEAGREK--KNKKGVVRDK-------EAIALAL 198 (228)
T ss_pred eeeeEEEeehHh----------HHHHHHHHhCc---CeEEEEc-ChHhhhcHhh--cCcCCeecCH-------HHHHHHH
Confidence 2766666443 58889999998 5444444 2211111100 0000001110 0112235
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
+++...+.+.||++....+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~s~ 219 (228)
T TIGR00478 199 HKVIDKGESPDFQEKKIIFSL 219 (228)
T ss_pred HHHHHHHHcCCCeEeeEEECC
Confidence 567778888899988776554
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=97.81 E-value=1.3e-05 Score=76.74 Aligned_cols=89 Identities=15% Similarity=0.167 Sum_probs=64.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh------hhHhhhCC--CceEEeccCCc---CCCCC--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL------PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl------p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~~~~vlh 245 (345)
..+++||||||.|.++..|+++. ++.+-. +.-+..|. .+--+-+-+-+ |+|+. |+|.|+.++.
T Consensus 117 ~iR~~LDvGcG~aSF~a~l~~r~----V~t~s~a~~d~~~~qvqfaleRGvpa~~~~~~s~rLPfp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 117 GIRTALDVGCGVASFGAYLLERN----VTTMSFAPNDEHEAQVQFALERGVPAMIGVLGSQRLPFPSNAFDMVHCSRCLI 192 (506)
T ss_pred ceEEEEeccceeehhHHHHhhCC----ceEEEcccccCCchhhhhhhhcCcchhhhhhccccccCCccchhhhhcccccc
Confidence 45789999999999999999885 222222 12222222 34444343322 67754 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|...+ -.+|-++-|+|+| ||.+++.
T Consensus 193 ~W~~~~-g~~l~evdRvLRp---GGyfv~S 218 (506)
T PF03141_consen 193 PWHPND-GFLLFEVDRVLRP---GGYFVLS 218 (506)
T ss_pred cchhcc-cceeehhhhhhcc---CceEEec
Confidence 999887 3689999999999 9988887
|
; GO: 0008168 methyltransferase activity |
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00016 Score=69.16 Aligned_cols=93 Identities=15% Similarity=0.035 Sum_probs=65.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC-----CC-C-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV-----PS-G-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~-----p~-~-D~i~ 239 (345)
...+|||+|||+|.++...+.. +..+++.+|+ +.+++.++ +++++.+|+++.+ .. . |+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4579999999999998876643 3458999999 77776555 4679999998732 12 2 9999
Q ss_pred eccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.----.-+. ..-..+++.+.+.|+| ||.++.+
T Consensus 299 lDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~---gG~lv~~ 338 (396)
T PRK15128 299 MDPPKFVENKSQLMGACRGYKDINMLAIQLLNP---GGILLTF 338 (396)
T ss_pred ECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 8633211111 1234566778899999 9998887
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00027 Score=61.34 Aligned_cols=123 Identities=20% Similarity=0.190 Sum_probs=87.5
Q ss_pred eEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC---CCEEEeccccccCC
Q 044482 183 LVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS---GQAIFTKSVLLNWS 248 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~---~D~i~~~~vlh~~~ 248 (345)
|.||||-+|.+...|++...--+++..|+ +.-++.|+ +|++..||=++.++. .|+|++..+ .
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAGM----G 76 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAGM----G 76 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEEE-----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEecC----C
Confidence 68999999999999999988778999999 66666655 799999998886663 378877754 4
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
-....+||.+....++. ..++++. | . . ....+++||.+.||.+++
T Consensus 77 G~lI~~ILe~~~~~~~~---~~~lILq-----P-~--------------------~------~~~~LR~~L~~~gf~I~~ 121 (205)
T PF04816_consen 77 GELIIEILEAGPEKLSS---AKRLILQ-----P-N--------------------T------HAYELRRWLYENGFEIID 121 (205)
T ss_dssp HHHHHHHHHHTGGGGTT-----EEEEE-----E-S--------------------S-------HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHhhHHHhcc---CCeEEEe-----C-C--------------------C------ChHHHHHHHHHCCCEEEE
Confidence 45667899988888777 5677666 1 0 0 256689999999999987
Q ss_pred EEecC--C-ceEEEEEEcC
Q 044482 329 VICRS--Y-CYWVIEFYKP 344 (345)
Q Consensus 329 ~~~~~--~-~~~vi~~~k~ 344 (345)
-.-+. + .+.||.+.+.
T Consensus 122 E~lv~e~~~~YeIi~~~~~ 140 (205)
T PF04816_consen 122 EDLVEENGRFYEIIVAERG 140 (205)
T ss_dssp EEEEEETTEEEEEEEEEES
T ss_pred eEEEeECCEEEEEEEEEeC
Confidence 65542 3 4567777654
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.77 E-value=6e-05 Score=64.22 Aligned_cols=88 Identities=16% Similarity=0.141 Sum_probs=67.2
Q ss_pred cccccceEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC-------------------CceEEeccCCcCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP-------------------CVEHVEGDMFVNVP- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~-------------------ri~~~~gd~~~~~p- 233 (345)
+....+.||||+|+|.++..++..- |....+++|. |++++.++ +++++.||-..-.+
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g~~e 159 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKGYAE 159 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccccCCc
Confidence 4456789999999999999888542 3333488998 88877544 68899999888444
Q ss_pred CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ |.|++... +.++.++....|+| ||+++|-
T Consensus 160 ~a~YDaIhvGAa--------a~~~pq~l~dqL~~---gGrllip 192 (237)
T KOG1661|consen 160 QAPYDAIHVGAA--------ASELPQELLDQLKP---GGRLLIP 192 (237)
T ss_pred cCCcceEEEccC--------ccccHHHHHHhhcc---CCeEEEe
Confidence 33 99988732 34677888889999 9999887
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00011 Score=71.58 Aligned_cols=95 Identities=14% Similarity=0.217 Sum_probs=64.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC---C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV---P-- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~---p-- 233 (345)
.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+ +++++.+|+.+.+ +
T Consensus 283 ~~~~~l~-~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~ 359 (431)
T TIGR00479 283 RALEALE-LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWA 359 (431)
T ss_pred HHHHHhc-cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhc
Confidence 3444444 4556799999999999999999875 37899998 88887665 6899999986521 1
Q ss_pred C-C-CEEEeccccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-G-QAIFTKSVLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~-D~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|++.-- ... ...+++.+. .++| ++.+++.
T Consensus 360 ~~~~D~vi~dPP-----r~G~~~~~l~~l~-~l~~---~~ivyvs 395 (431)
T TIGR00479 360 GQIPDVLLLDPP-----RKGCAAEVLRTII-ELKP---ERIVYVS 395 (431)
T ss_pred CCCCCEEEECcC-----CCCCCHHHHHHHH-hcCC---CEEEEEc
Confidence 1 2 88876321 111 134555554 4788 7654444
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.4e-05 Score=63.21 Aligned_cols=65 Identities=17% Similarity=0.072 Sum_probs=49.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCCCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSGQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~D~i~~~~vl 244 (345)
..++|+|+|||+|.++...+-..|. +++++|+ |+.++.++ +++|+..|..+.-..-|.++++--+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~-~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimNPPF 118 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGAS-RVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMNPPF 118 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCc-EEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEECCCC
Confidence 3478999999999999998876654 7899998 88887766 6889999886533233777776444
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00021 Score=62.39 Aligned_cols=100 Identities=19% Similarity=0.278 Sum_probs=77.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCC----CeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCCC-C--CE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ----ITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVPS-G--QA 237 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~----~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p~-~--D~ 237 (345)
+..+++|+|.|+..-++.+++.+-+ ++.+-+|+ ..+++... .+.-+.+|+.. .+|. + =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 4578999999999999999988766 78899998 44443211 46667788865 3443 3 46
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+++...|.++++++|..+|.+++.+|.| |-.+++--|...+
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~p---Gd~~LlGvDl~k~ 198 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRP---GDYFLLGVDLRKP 198 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCC---cceEEEeccccCH
Confidence 7788999999999999999999999999 8888775354443
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00014 Score=63.45 Aligned_cols=96 Identities=13% Similarity=0.138 Sum_probs=75.2
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEe-ccCCcCC---C-CC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVE-GDMFVNV---P-SG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~-gd~~~~~---p-~~-D~i 238 (345)
.++.++||+||.+.|..+..++...| +.+.+.+|. |+..+.|+ +|+++. ||..+-+ . .. |+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45778999999999999999999999 789999999 88887776 688888 5887622 2 22 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|+- -...+-...|..+.+.|+| || ++|. |.+...
T Consensus 137 FID-----adK~~yp~~le~~~~lLr~---GG-liv~-DNvl~~ 170 (219)
T COG4122 137 FID-----ADKADYPEYLERALPLLRP---GG-LIVA-DNVLFG 170 (219)
T ss_pred EEe-----CChhhCHHHHHHHHHHhCC---Cc-EEEE-eecccC
Confidence 875 3444557889999999999 76 6666 555543
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00019 Score=64.47 Aligned_cols=85 Identities=12% Similarity=0.036 Sum_probs=63.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCC-CC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVP-SG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p-~~-D~i~~ 240 (345)
-+++++||=||||.|..++++++. |. +++.+|+ ++|++.++ |++++.. +.... +. |+|++
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--~~~~~~~~fDVIIv 145 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh--hhhccCCcCCEEEE
Confidence 346789999999999999999975 55 8999999 88887666 7777752 32222 33 99987
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.. .+ ....+.|+++|+| ||.++..
T Consensus 146 Ds~----~~---~~fy~~~~~~L~~---~Gi~v~Q 170 (262)
T PRK00536 146 LQE----PD---IHKIDGLKRMLKE---DGVFISV 170 (262)
T ss_pred cCC----CC---hHHHHHHHHhcCC---CcEEEEC
Confidence 643 22 3568999999999 8866554
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.1e-05 Score=67.45 Aligned_cols=95 Identities=15% Similarity=0.135 Sum_probs=69.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~-~-D~i 238 (345)
++.++||=||+|.|..+..+++..+..+++++|+ |.|++.++ |++++.+|... ..++ . |+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 3668999999999999999997766678999999 88888765 78999999876 3334 4 988
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-..--.-+... ....++.+++.|+| ||.+++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~---~Gv~v~~ 190 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKP---DGVLVLQ 190 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCC---CcEEEEE
Confidence 8743321111111 24689999999999 9977776
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00092 Score=58.06 Aligned_cols=125 Identities=18% Similarity=0.210 Sum_probs=86.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc---CCCCC--CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV---NVPSG--QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~---~~p~~--D~i~ 239 (345)
-+...+|||...|-|+++++-+++- ...++-++- |.|++.|. +|+.+.||..+ .+++. |+|+
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 3467899999999999999988874 236666666 88988776 68999999987 45543 8764
Q ss_pred eccccccCCh------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 240 TKSVLLNWSD------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 240 ~~~vlh~~~d------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+=|. --..++-+++++.|+| ||+++=- - .++.. ...-.| -..
T Consensus 211 -----HDPPRfS~AgeLYseefY~El~RiLkr---gGrlFHY-v---G~Pg~------ryrG~d-------------~~~ 259 (287)
T COG2521 211 -----HDPPRFSLAGELYSEEFYRELYRILKR---GGRLFHY-V---GNPGK------RYRGLD-------------LPK 259 (287)
T ss_pred -----eCCCccchhhhHhHHHHHHHHHHHcCc---CCcEEEE-e---CCCCc------ccccCC-------------hhH
Confidence 43111 1235789999999999 9998655 1 11110 011112 145
Q ss_pred HHHHHHHHCCCCceEEEecC
Q 044482 314 EFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~ 333 (345)
...+.|+++||.+++.....
T Consensus 260 gVa~RLr~vGF~~v~~~~~~ 279 (287)
T COG2521 260 GVAERLRRVGFEVVKKVREA 279 (287)
T ss_pred HHHHHHHhcCceeeeeehhc
Confidence 67899999999987766543
|
|
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00029 Score=62.93 Aligned_cols=95 Identities=13% Similarity=0.124 Sum_probs=72.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---------CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---------SG 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---------~~ 235 (345)
..+.++||+||.++|..+..+++..| +.+++.+|. |+..+.|+ +|+++.||+.+.++ ..
T Consensus 77 ~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~ 156 (247)
T PLN02589 77 LINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGT 156 (247)
T ss_pred HhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCc
Confidence 44568999999999999999998864 678999998 66666554 89999999877322 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|+||+-. +...-...+..+.+.|+| || ++|+ |.++-
T Consensus 157 fD~iFiDa-----dK~~Y~~y~~~~l~ll~~---GG-viv~-DNvl~ 193 (247)
T PLN02589 157 FDFIFVDA-----DKDNYINYHKRLIDLVKV---GG-VIGY-DNTLW 193 (247)
T ss_pred ccEEEecC-----CHHHhHHHHHHHHHhcCC---Ce-EEEE-cCCCC
Confidence 8888753 345567788999999999 77 5666 55543
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00031 Score=66.96 Aligned_cols=86 Identities=7% Similarity=-0.051 Sum_probs=58.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---C-CCEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---S-GQAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~-~D~i~~~~vlh 245 (345)
..+|||+|||+|.++..++.. ..+++++|. +..++.++ +++|+.+|+.+..+ . .|+|++.=---
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 468999999999999999864 468999998 77777655 58899999876222 2 38888752211
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+. .++++.+. .++| ++-++|.
T Consensus 312 G~~----~~~l~~l~-~~~p---~~ivyvs 333 (374)
T TIGR02085 312 GIG----KELCDYLS-QMAP---KFILYSS 333 (374)
T ss_pred CCc----HHHHHHHH-hcCC---CeEEEEE
Confidence 111 23444443 4788 6655555
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00026 Score=65.11 Aligned_cols=90 Identities=13% Similarity=0.048 Sum_probs=65.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~vlh 245 (345)
..++|||||||+|.++.--+++. ..+++++|-.++++.|. .|+++.|.+.+ .+| +. |+|+.-|.=+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWMGy 138 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWMGY 138 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhhhH
Confidence 34899999999999999888887 56899999988877665 59999999988 788 55 9998766543
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEE
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~l 272 (345)
.+--+ -...+|-.=-+.|+| ||.+
T Consensus 139 ~Ll~EsMldsVl~ARdkwL~~---~G~i 163 (346)
T KOG1499|consen 139 FLLYESMLDSVLYARDKWLKE---GGLI 163 (346)
T ss_pred HHHHhhhhhhhhhhhhhccCC---CceE
Confidence 33222 222333333467899 8854
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00025 Score=64.87 Aligned_cols=63 Identities=19% Similarity=0.154 Sum_probs=51.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC-------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP-------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~ 230 (345)
..++++.+. ......+||.+||.|..+..+++..| +.+++++|. |++++.++ |++++.+||.+
T Consensus 8 l~Evl~~L~-~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~ 79 (296)
T PRK00050 8 LDEVVDALA-IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSN 79 (296)
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHH
Confidence 346677765 45567999999999999999999986 789999999 88887765 57777777764
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00044 Score=63.66 Aligned_cols=88 Identities=18% Similarity=0.274 Sum_probs=68.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC----------------CceEEeccCCcCCCC---C-C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP----------------CVEHVEGDMFVNVPS---G-Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~~~p~---~-D 236 (345)
+.+++|-+|||.|.-+++++ +||+. +++.+|+ |.|++.++ |++++..|.++-+.. . |
T Consensus 289 ~a~~vLvlGGGDGLAlRell-kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD 367 (508)
T COG4262 289 GARSVLVLGGGDGLALRELL-KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD 367 (508)
T ss_pred ccceEEEEcCCchHHHHHHH-hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence 45789999999999999987 68864 7899999 99999776 899999999984442 2 6
Q ss_pred EEEeccccccCChhH--------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ--------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~--------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++. +++|+. ..++-+-.++.|++ +|.+++.
T Consensus 368 ~vIV-----Dl~DP~tps~~rlYS~eFY~ll~~~l~e---~Gl~VvQ 406 (508)
T COG4262 368 VVIV-----DLPDPSTPSIGRLYSVEFYRLLSRHLAE---TGLMVVQ 406 (508)
T ss_pred EEEE-----eCCCCCCcchhhhhhHHHHHHHHHhcCc---CceEEEe
Confidence 6654 555552 23566778899999 8877776
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00055 Score=60.77 Aligned_cols=65 Identities=23% Similarity=0.303 Sum_probs=47.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEE----eccCCcCCC--CC--CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHV----EGDMFVNVP--SG--QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~----~gd~~~~~p--~~--D~ 237 (345)
+.....++|+|||+|..+..++..-|+.+++.+|. +..+..|. |+.++ ..|.+.+.+ .+ |+
T Consensus 146 ~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dl 225 (328)
T KOG2904|consen 146 HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDL 225 (328)
T ss_pred hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeE
Confidence 33445799999999999999999999999999999 44444332 67777 445555433 34 77
Q ss_pred EEec
Q 044482 238 IFTK 241 (345)
Q Consensus 238 i~~~ 241 (345)
++++
T Consensus 226 lvsN 229 (328)
T KOG2904|consen 226 LVSN 229 (328)
T ss_pred EecC
Confidence 7765
|
|
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00029 Score=59.75 Aligned_cols=92 Identities=10% Similarity=0.137 Sum_probs=62.4
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh-------hCC---------CceEEeccCCcCCCCC-CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK-------NAP---------CVEHVEGDMFVNVPSG-QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-------~a~---------ri~~~~gd~~~~~p~~-D~i~~~~ 242 (345)
..+.|||||.|.++..|...||+--++++++ -.|.+ ..+ ++.+...+.+.-+|+- .--.++-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 4689999999999999999999998999988 33322 111 5777777766655521 1111222
Q ss_pred ccccCChhH-----------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQ-----------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~-----------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++-++|+. +..++.+..-.|++ ||.++.+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~---gg~~yti 182 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLRE---GGILYTI 182 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhc---CceEEEE
Confidence 222334432 24678888889999 9999988
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00059 Score=55.66 Aligned_cols=81 Identities=16% Similarity=0.187 Sum_probs=56.3
Q ss_pred cccccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC-CCCC-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN-VPSG-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~-~p~~-D~ 237 (345)
-.+..+|+|+|||.|+++..++.. .|+++++++|. ++.++.+. ++++..++..+. .... ++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDI 102 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeE
Confidence 356689999999999999999982 37899999998 55555444 456666655442 2233 77
Q ss_pred EEeccccccCChhHHHHHHHHHHh
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
++--|..-++++. +|+...+
T Consensus 103 ~vgLHaCG~Ls~~----~l~~~~~ 122 (141)
T PF13679_consen 103 LVGLHACGDLSDR----ALRLFIR 122 (141)
T ss_pred EEEeecccchHHH----HHHHHHH
Confidence 7777777777664 4554444
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00043 Score=55.56 Aligned_cols=73 Identities=19% Similarity=0.275 Sum_probs=51.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-- 235 (345)
.|-+.|+++. +.+++|+|||.|.+. ++-.+|.. .++++|+ |+.++.+. ++.+.+.|+.++.+. +
T Consensus 39 ~Ih~TygdiE-gkkl~DLgcgcGmLs--~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~f 115 (185)
T KOG3420|consen 39 TIHNTYGDIE-GKKLKDLGCGCGMLS--IAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIF 115 (185)
T ss_pred HHHhhhcccc-CcchhhhcCchhhhH--HHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeE
Confidence 3445565343 478999999999999 44456655 5899999 88888665 677888888875553 3
Q ss_pred CEEEecccc
Q 044482 236 QAIFTKSVL 244 (345)
Q Consensus 236 D~i~~~~vl 244 (345)
|..+++--+
T Consensus 116 DtaviNppF 124 (185)
T KOG3420|consen 116 DTAVINPPF 124 (185)
T ss_pred eeEEecCCC
Confidence 666665444
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0037 Score=56.45 Aligned_cols=142 Identities=12% Similarity=0.066 Sum_probs=92.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCcCCC----------CC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFVNVP----------SG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~p----------~~- 235 (345)
+...||.+|||-=+-.-.+... ++++++-+|+|++++..+ +..++..|+.+.+. +.
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~~~-~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~p 159 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLPWP-DGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAP 159 (260)
T ss_pred CCcEEEEeCCccccHHHhcCCC-CCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCC
Confidence 4567999999998877766322 258899999999876322 67889999863221 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh-hc--CCCccCCH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD-LF--PQAKGRTA 312 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~-~~--~~~~~rt~ 312 (345)
-++++-.++.+++.+++.++|+.+.+...| |+.|+ . |.+.+-..... ......... ... .. +--...+.
T Consensus 160 tl~i~EGvl~YL~~~~v~~ll~~i~~~~~~---gs~l~-~-d~~~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (260)
T TIGR00027 160 TAWLWEGLLMYLTEEAVDALLAFIAELSAP---GSRLA-F-DYVRPLDGEWR-AGMRAPVYH--AARGVDGSGLVFGIDR 231 (260)
T ss_pred eeeeecchhhcCCHHHHHHHHHHHHHhCCC---CcEEE-E-EeccccchhHH-HHHHHHHHH--hhhcccccccccCCCh
Confidence 578888999999999999999999998888 76554 5 56544111100 000000000 000 00 00012467
Q ss_pred HHHHHHHHHCCCCceEE
Q 044482 313 GEFKALAMAAGFGTIKV 329 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~ 329 (345)
++..++|++.||+....
T Consensus 232 ~~~~~~l~~~Gw~~~~~ 248 (260)
T TIGR00027 232 ADVAEWLAERGWRASEH 248 (260)
T ss_pred hhHHHHHHHCCCeeecC
Confidence 89999999999998665
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0015 Score=58.44 Aligned_cols=91 Identities=21% Similarity=0.311 Sum_probs=63.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhh-hC---CCceEEeccCCc-CCCC--CCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIK-NA---PCVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~-~a---~ri~~~~gd~~~-~~p~--~D~ 237 (345)
.+.|++..+ .....+|++||+|.|.++..|+++...+.++-+|. -+.+. .. .+++++.||+++ ++|+ .-.
T Consensus 19 ~~kIv~~a~-~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~~l~~~~ 97 (259)
T COG0030 19 IDKIVEAAN-ISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFPSLAQPY 97 (259)
T ss_pred HHHHHHhcC-CCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcchhhcCCC
Confidence 556777776 55578999999999999999999988766666663 22222 21 189999999999 7875 333
Q ss_pred EEeccccccCChhHHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKN 258 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~ 258 (345)
.+.+|+=++.+-+-..++|..
T Consensus 98 ~vVaNlPY~Isspii~kll~~ 118 (259)
T COG0030 98 KVVANLPYNISSPILFKLLEE 118 (259)
T ss_pred EEEEcCCCcccHHHHHHHHhc
Confidence 444555566666554444443
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00073 Score=59.95 Aligned_cols=71 Identities=13% Similarity=0.271 Sum_probs=54.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...|++.-+ ......||+||.|+|.++..++++-. +++.++. |.|++..+ +.+++.||+++ ++|-
T Consensus 47 ~~~I~~ka~-~k~tD~VLEvGPGTGnLT~~lLe~~k--kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P~ 123 (315)
T KOG0820|consen 47 IDQIVEKAD-LKPTDVVLEVGPGTGNLTVKLLEAGK--KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLPR 123 (315)
T ss_pred HHHHHhccC-CCCCCEEEEeCCCCCHHHHHHHHhcC--eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCcc
Confidence 445666666 77888999999999999999999864 5666666 66665433 78999999999 8885
Q ss_pred CCEEEe
Q 044482 235 GQAIFT 240 (345)
Q Consensus 235 ~D~i~~ 240 (345)
-|.++.
T Consensus 124 fd~cVs 129 (315)
T KOG0820|consen 124 FDGCVS 129 (315)
T ss_pred cceeec
Confidence 565544
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00032 Score=62.72 Aligned_cols=91 Identities=13% Similarity=0.005 Sum_probs=59.1
Q ss_pred EEeccCCcC--C------CC-CCEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh
Q 044482 223 HVEGDMFVN--V------PS-GQAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR 291 (345)
Q Consensus 223 ~~~gd~~~~--~------p~-~D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~ 291 (345)
++..|.+++ + |+ .|++++..+|.-- +.++-.+.++++.+.||| ||.|++. ...-... .
T Consensus 138 Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkp---GG~Lil~-~~l~~t~----Y--- 206 (256)
T PF01234_consen 138 VVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKP---GGHLILA-GVLGSTY----Y--- 206 (256)
T ss_dssp EEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEE---EEEEEEE-EESS-SE----E---
T ss_pred EEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEcCcee----E---
Confidence 667888872 2 22 4999999999643 345678999999999999 9999998 5532210 0
Q ss_pred hhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 292 NILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 292 ~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
..-...+..+ ..+++.+++.|+++||.+.+...
T Consensus 207 ~vG~~~F~~l-------~l~ee~v~~al~~aG~~i~~~~~ 239 (256)
T PF01234_consen 207 MVGGHKFPCL-------PLNEEFVREALEEAGFDIEDLEK 239 (256)
T ss_dssp EETTEEEE----------B-HHHHHHHHHHTTEEEEEEEG
T ss_pred EECCEecccc-------cCCHHHHHHHHHHcCCEEEeccc
Confidence 0000011111 24689999999999999888774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00077 Score=57.87 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=58.4
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC---CC-CEEEec
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP---SG-QAIFTK 241 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p---~~-D~i~~~ 241 (345)
..++||++||+|.++.+++.+... +++.+|. +..++.++ +++++.+|+++. .. .. |+|++-
T Consensus 50 g~~vLDLfaGsG~lglea~srga~-~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 50 GAHLLDVFAGSGLLGEEALSRGAK-VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCEEEEecCCCcHHHHHHHhCCCC-EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 468999999999999999998753 7899998 55555443 578999999662 21 12 777664
Q ss_pred cccccCChhHHHHHHHHHHh--hCCCCCCCcEEEEEeccC
Q 044482 242 SVLLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~~d~~ 279 (345)
=-...-.. ..++..+.+ .|++ +| ++|+ |.-
T Consensus 129 PPy~~~~~---~~~l~~l~~~~~l~~---~~-iiv~-E~~ 160 (189)
T TIGR00095 129 PPFFNGAL---QALLELCENNWILED---TV-LIVV-EED 160 (189)
T ss_pred cCCCCCcH---HHHHHHHHHCCCCCC---Ce-EEEE-Eec
Confidence 33322112 234444433 4666 55 5666 543
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0031 Score=53.32 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=87.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHh-----h------hCC-----CceEEeccCCc-CCCCC-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVI-----K------NAP-----CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i-----~------~a~-----ri~~~~gd~~~-~~p~~-D~ 237 (345)
+....+|+|+=-|.|.+++-+...- |.-.+..+--.+.. + .++ +.+.+..+... ..|+. |+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 5567899999999999999888753 44333332222221 1 111 56666666555 43455 88
Q ss_pred EEeccccccC-----ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 238 IFTKSVLLNW-----SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 238 i~~~~vlh~~-----~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
++....-|++ ....+.++.+.++++||| ||.++|. |.......... |-. .-.-++.
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKP---GGv~~V~-dH~a~pG~~~~---------dt~------~~~ri~~ 186 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKP---GGVYLVE-DHRADPGSGLS---------DTI------TLHRIDP 186 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCC---CcEEEEE-eccccCCCChh---------hhh------hhcccCh
Confidence 8876555543 345678899999999999 9999999 88765432211 100 0112346
Q ss_pred HHHHHHHHHCCCCceEEEec
Q 044482 313 GEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~ 332 (345)
.-..+-.+++||+..--..+
T Consensus 187 a~V~a~veaaGFkl~aeS~i 206 (238)
T COG4798 187 AVVIAEVEAAGFKLEAESEI 206 (238)
T ss_pred HHHHHHHHhhcceeeeeehh
Confidence 77888999999987654433
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0004 Score=63.61 Aligned_cols=105 Identities=14% Similarity=0.247 Sum_probs=69.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhC----C-----CceEEeccCCc---CCCCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNA----P-----CVEHVEGDMFV---NVPSG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a----~-----ri~~~~gd~~~---~~p~~ 235 (345)
+....++|+. ++|||||.|.|.-+-++-.-+|+++ +++++. |.+-+.. . +...-..|+.. ++|.+
T Consensus 105 L~~~~~dfap-qsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~a 183 (484)
T COG5459 105 LQKRVPDFAP-QSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAA 183 (484)
T ss_pred HHHhCCCcCc-chhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCcc
Confidence 3333443443 6799999999999999999999985 566666 3322111 1 22223344443 55656
Q ss_pred CEEEeccccccCChhHH----HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQC----LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~----~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|.|.+..++|.+-++.. ...+++....+.| ||.|+|+ |.-
T Consensus 184 d~ytl~i~~~eLl~d~~ek~i~~~ie~lw~l~~~---gg~lViv-ErG 227 (484)
T COG5459 184 DLYTLAIVLDELLPDGNEKPIQVNIERLWNLLAP---GGHLVIV-ERG 227 (484)
T ss_pred ceeehhhhhhhhccccCcchHHHHHHHHHHhccC---CCeEEEE-eCC
Confidence 88777777766544433 3489999999999 9999999 653
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0068 Score=50.74 Aligned_cols=63 Identities=11% Similarity=0.231 Sum_probs=49.1
Q ss_pred ccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-CC-CEEEecc
Q 044482 180 LKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
..-+++||||+|..+..+++. -|+......|+ |+.++... ++..+..|+++.+- .. |+.+++-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~tdl~~~l~~~~VDvLvfNP 118 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRTDLLSGLRNESVDVLVFNP 118 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeehhHHhhhccCCccEEEECC
Confidence 578999999999999998886 47788899999 77666533 67888899988443 33 8887763
|
|
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0033 Score=54.07 Aligned_cols=105 Identities=16% Similarity=0.148 Sum_probs=74.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCCCceEEeccCCc-CC--------CC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAPCVEHVEGDMFV-NV--------PS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~--------p~-~ 235 (345)
...+.+.+.-+.+..+|+|+|+-.|.+++.++++-. ..+++++|+.++-... ++.++++|++. +. +. .
T Consensus 33 L~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~~~-~V~~iq~d~~~~~~~~~l~~~l~~~~ 111 (205)
T COG0293 33 LLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIP-GVIFLQGDITDEDTLEKLLEALGGAP 111 (205)
T ss_pred HHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccccCC-CceEEeeeccCccHHHHHHHHcCCCC
Confidence 446667776577788999999999999999998754 4569999986654443 59999999987 32 21 2
Q ss_pred -CEEEe---ccccccCChh------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFT---KSVLLNWSDE------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~---~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++ .++--+|+-+ -+...+.-+...|+| ||.+++-
T Consensus 112 ~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~---~G~fv~K 158 (205)
T COG0293 112 VDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKP---GGSFVAK 158 (205)
T ss_pred cceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCC---CCeEEEE
Confidence 77773 2232233322 345567777889999 9988877
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0012 Score=56.29 Aligned_cols=85 Identities=18% Similarity=0.139 Sum_probs=65.4
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH---hhhCC------CceEEeccCCc-CCCCC-CEEEeccccccCCh
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYV---IKNAP------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSD 249 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~---i~~a~------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d 249 (345)
+++|||.|.|.-++.++=.+|+++++.+|. ..- ++.+. +++++.+.+.+ ..+.. |+|+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~----- 125 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA----- 125 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS-----
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc-----
Confidence 799999999999999999999999999997 221 22222 78899998877 33333 999999775
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+++-+...+++ ||+++..
T Consensus 126 -~l~~l~~~~~~~l~~---~G~~l~~ 147 (184)
T PF02527_consen 126 -PLDKLLELARPLLKP---GGRLLAY 147 (184)
T ss_dssp -SHHHHHHHHGGGEEE---EEEEEEE
T ss_pred -CHHHHHHHHHHhcCC---CCEEEEE
Confidence 124678888899999 9998888
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00075 Score=57.43 Aligned_cols=104 Identities=17% Similarity=0.174 Sum_probs=62.6
Q ss_pred HHHHHhccCcc--cccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCcC---------CC--
Q 044482 168 KKILEIYKGFK--ELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFVN---------VP-- 233 (345)
Q Consensus 168 ~~i~~~~~~~~--~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~p-- 233 (345)
.++.+.++-+. ...++||+||++|.++..++++. +..+++++|+..+-+. +.+.++.+|+.++ .+
T Consensus 10 ~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~~~~-~~~~~i~~d~~~~~~~~~i~~~~~~~ 88 (181)
T PF01728_consen 10 YEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPMDPL-QNVSFIQGDITNPENIKDIRKLLPES 88 (181)
T ss_dssp HHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSSTGS--TTEEBTTGGGEEEEHSHHGGGSHGTT
T ss_pred HHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEeccccccc-cceeeeecccchhhHHHhhhhhcccc
Confidence 35566665233 34899999999999999999987 7789999999555221 3455555665431 11
Q ss_pred -CC-CEEEecccc---ccC--C----hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 -SG-QAIFTKSVL---LNW--S----DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 -~~-D~i~~~~vl---h~~--~----d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|++--.. .++ + -+.+...|.-+.+.|+| ||.+++-
T Consensus 89 ~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~---gG~~v~K 138 (181)
T PF01728_consen 89 GEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKP---GGTFVIK 138 (181)
T ss_dssp TCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCT---TEEEEEE
T ss_pred ccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcC---CCEEEEE
Confidence 13 888775422 111 1 11233444455567899 9987776
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0013 Score=59.45 Aligned_cols=90 Identities=18% Similarity=0.274 Sum_probs=62.2
Q ss_pred HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-
Q 044482 165 IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS- 234 (345)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~- 234 (345)
..++.+++.++ ......|||||+|.|.++..|++.. .++++++. +..++..+ +++++.+|+++ ..+.
T Consensus 17 ~~~~~Iv~~~~-~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~~~~~ 93 (262)
T PF00398_consen 17 NIADKIVDALD-LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWDLYDL 93 (262)
T ss_dssp HHHHHHHHHHT-CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSCGGGH
T ss_pred HHHHHHHHhcC-CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhccccHHh
Confidence 34567778777 7778899999999999999999998 56677776 44433221 89999999998 5554
Q ss_pred ---CCEEEeccccccCChhHHHHHHHHHHh
Q 044482 235 ---GQAIFTKSVLLNWSDEQCLKILKNCYD 261 (345)
Q Consensus 235 ---~D~i~~~~vlh~~~d~~~~~iL~~~~~ 261 (345)
..+.++.++=++.+. .++.++..
T Consensus 94 ~~~~~~~vv~NlPy~is~----~il~~ll~ 119 (262)
T PF00398_consen 94 LKNQPLLVVGNLPYNISS----PILRKLLE 119 (262)
T ss_dssp CSSSEEEEEEEETGTGHH----HHHHHHHH
T ss_pred hcCCceEEEEEecccchH----HHHHHHhh
Confidence 345555555444333 45666655
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.003 Score=53.73 Aligned_cols=103 Identities=16% Similarity=0.172 Sum_probs=66.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCe---------EEEeeh-hhHhhhCC----------CceEEeccC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT---------GINFDL-PYVIKNAP----------CVEHVEGDM 228 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~---------~~~~Dl-p~~i~~a~----------ri~~~~gd~ 228 (345)
.++..-. |.....|+|-=||+|+++++.+...++.. +++.|. +.+++.++ .+.+...|+
T Consensus 19 ~ll~la~-~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 19 ALLNLAG-WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHhC-CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3444444 77778999999999999999887776666 899998 77777665 578999999
Q ss_pred Cc-CCCCC--CEEEecccccc-CCh-hH----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 229 FV-NVPSG--QAIFTKSVLLN-WSD-EQ----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 229 ~~-~~p~~--D~i~~~~vlh~-~~d-~~----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ +++++ |+|++.--.-. ... .+ -..+++++.+.+++ ...+++.
T Consensus 98 ~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~---~~v~l~~ 150 (179)
T PF01170_consen 98 RELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP---RAVFLTT 150 (179)
T ss_dssp GGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT---CEEEEEE
T ss_pred hhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC---CEEEEEE
Confidence 98 64543 99988644322 121 11 23567888888888 5444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.021 Score=51.48 Aligned_cols=131 Identities=15% Similarity=0.078 Sum_probs=87.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH-------hhh---CC----------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YV-------IKN---AP---------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~-------i~~---a~---------------------------- 219 (345)
+..+||==|||-|.++-.++++. -.+.+.+.. .| +.. ..
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPD 133 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPD 133 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCC
Confidence 34689999999999999999983 344555542 22 111 00
Q ss_pred -----------CceEEeccCCc-CCCC---C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 220 -----------CVEHVEGDMFV-NVPS---G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 220 -----------ri~~~~gd~~~-~~p~---~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+++...|||.+ .-++ + |+|+....+ | +-+....-|+.|++.||| ||..|=+ -+++-.
T Consensus 134 v~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFI-D-TA~Ni~~Yi~tI~~lLkp---gG~WIN~-GPLlyh 207 (270)
T PF07942_consen 134 VDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFI-D-TAENIIEYIETIEHLLKP---GGYWINF-GPLLYH 207 (270)
T ss_pred cCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEe-e-chHHHHHHHHHHHHHhcc---CCEEEec-CCcccc
Confidence 57889999998 3223 3 998888666 2 344568899999999999 9844444 332221
Q ss_pred CCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 283 SPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 283 ~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.. +.. ......-+.+.+|+.+++++.||++++...
T Consensus 208 ~~------------~~~--~~~~~sveLs~eEi~~l~~~~GF~~~~~~~ 242 (270)
T PF07942_consen 208 FE------------PMS--IPNEMSVELSLEEIKELIEKLGFEIEKEES 242 (270)
T ss_pred CC------------CCC--CCCCcccCCCHHHHHHHHHHCCCEEEEEEE
Confidence 10 100 000123678999999999999999987654
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.00041 Score=57.70 Aligned_cols=59 Identities=20% Similarity=0.352 Sum_probs=43.3
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC---C--C-CCEEEec
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV---P--S-GQAIFTK 241 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~---p--~-~D~i~~~ 241 (345)
.+|+|+.||.|..++++++.++ +++.+|+ |..++.++ ||.++.||+++.. . . .|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999986 4788887 66676665 8999999999832 2 1 2888875
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.022 Score=54.03 Aligned_cols=146 Identities=18% Similarity=0.163 Sum_probs=86.8
Q ss_pred cccceEEecCCccHHHHHH--------HHH-------CCCCeEEEeehhh--------HhhhC-------------C--C
Q 044482 179 ELKKLVDVASCLGANMSLI--------VNT-------YPQITGINFDLPY--------VIKNA-------------P--C 220 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l--------~~~-------~p~~~~~~~Dlp~--------~i~~a-------------~--r 220 (345)
..-+|+|+|||+|.++..+ .++ -|++++..-|+|. .+..- . +
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~ 142 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHR 142 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCC
Confidence 3458999999999765433 333 2568888889873 11110 1 1
Q ss_pred ---ceEEeccCCc-CCCCC--CEEEeccccccCCh--h----------------------------------HHHHHHHH
Q 044482 221 ---VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD--E----------------------------------QCLKILKN 258 (345)
Q Consensus 221 ---i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d--~----------------------------------~~~~iL~~ 258 (345)
+.-++|.|++ -+|++ ++++.++.||.++. + +...+|+.
T Consensus 143 ~~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~ 222 (386)
T PLN02668 143 SYFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRA 222 (386)
T ss_pred ceEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3456689998 68865 99999999987762 0 12345666
Q ss_pred HHhhCCCCCCCcEEEEEeccCCCCC-CCCch-hh--hhh-hccchhhhhhcCCC--------------ccCCHHHHHHHH
Q 044482 259 CYDALPKSRKHGRTQLRSKRGLPES-PEFSS-IN--RNI-LTLDIVMYDLFPQA--------------KGRTAGEFKALA 319 (345)
Q Consensus 259 ~~~aL~p~~~gG~lli~~d~~~~~~-~~~~~-~~--~~~-~~~d~~~~~~~~~~--------------~~rt~~e~~~ll 319 (345)
=++-|.| ||++++. =.-.++. +.... .. +.. ...-+.-|+. .| ..++.+|+++.+
T Consensus 223 Ra~ELvp---GG~mvl~-~~Gr~~~~~~~~~~~~~~~~~~l~~al~dlv~--eGlI~eek~dsFniP~Y~ps~eEv~~~I 296 (386)
T PLN02668 223 RAQEMKR---GGAMFLV-CLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVQ--EGLVTSEKRDSFNIPVYAPSLQDFKEVV 296 (386)
T ss_pred HHHHhcc---CcEEEEE-EecCCCCCcccCCchhHHHHHHHHHHHHHHHH--cCCCCHHHHhcccCcccCCCHHHHHHHH
Confidence 6778999 9999888 4333321 11000 00 000 0000111221 22 357999999999
Q ss_pred HHCC-CCceEEE
Q 044482 320 MAAG-FGTIKVI 330 (345)
Q Consensus 320 ~~aG-f~~~~~~ 330 (345)
++.| |++.++.
T Consensus 297 e~~gsF~I~~le 308 (386)
T PLN02668 297 EANGSFAIDKLE 308 (386)
T ss_pred hhcCCEEeeeeE
Confidence 9988 6555543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0011 Score=55.63 Aligned_cols=90 Identities=12% Similarity=0.104 Sum_probs=69.6
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCCCEEEeccccccCCh
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSGQAIFTKSVLLNWSD 249 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~D~i~~~~vlh~~~d 249 (345)
.++.|+|.|+|-++.-.+++ .-+++.++. |.....|. +++++.||..+ .+..+|+|+|-.+=--+=+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHHHHhhHHhhc
Confidence 57899999999998776665 336888887 66555554 79999999998 7756699988755444556
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+.+++.+.+-|+- +++++=.
T Consensus 112 E~qVpV~n~vleFLr~---d~tiiPq 134 (252)
T COG4076 112 EKQVPVINAVLEFLRY---DPTIIPQ 134 (252)
T ss_pred ccccHHHHHHHHHhhc---CCccccH
Confidence 6668899999999998 8877654
|
|
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0065 Score=48.83 Aligned_cols=91 Identities=19% Similarity=0.191 Sum_probs=62.8
Q ss_pred eEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--C-------ceEEeccCCc---CCCC--C-CEEEeccccc
Q 044482 183 LVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--C-------VEHVEGDMFV---NVPS--G-QAIFTKSVLL 245 (345)
Q Consensus 183 vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--r-------i~~~~gd~~~---~~p~--~-D~i~~~~vlh 245 (345)
++|+|||+|... .+....+. ..++++|. +.++..++ . +.+..+|... ++.. . |++ .....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV-ISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE-eeeeeh
Confidence 999999999987 44444443 46777888 55555433 1 5788888765 3333 3 888 554444
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
++.+ ....++++.+.++| +|.+++. +....
T Consensus 130 ~~~~--~~~~~~~~~~~l~~---~g~~~~~-~~~~~ 159 (257)
T COG0500 130 HLLP--PAKALRELLRVLKP---GGRLVLS-DLLRD 159 (257)
T ss_pred hcCC--HHHHHHHHHHhcCC---CcEEEEE-eccCC
Confidence 4444 56889999999999 9998888 66543
|
|
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0032 Score=57.90 Aligned_cols=164 Identities=13% Similarity=0.080 Sum_probs=99.3
Q ss_pred HHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCC------------CceEE
Q 044482 158 SMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAP------------CVEHV 224 (345)
Q Consensus 158 ~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~------------ri~~~ 224 (345)
++...++..-+.+.+.++ .....||-+|||-=.-+-.+ ..| ++++.-+|+|++++.-+ +..++
T Consensus 73 ~~a~Rtr~fD~~~~~~~~--~g~~qvViLgaGLDTRayRl--~~~~~~~vfEvD~Pevi~~K~~~l~e~~~~~~~~~~~V 148 (297)
T COG3315 73 FLAARTRYFDDFVRAALD--AGIRQVVILGAGLDTRAYRL--DWPKGTRVFEVDLPEVIEFKKKLLAERGATPPAHRRLV 148 (297)
T ss_pred hHHHHHHHHHHHHHHHHH--hcccEEEEeccccccceeec--CCCCCCeEEECCCcHHHHHHHHHhhhcCCCCCceEEEE
Confidence 344444433333334333 23678999999865544333 345 47889999999987433 68999
Q ss_pred eccCCc-CCCC-----C------CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhh
Q 044482 225 EGDMFV-NVPS-----G------QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRN 292 (345)
Q Consensus 225 ~gd~~~-~~p~-----~------D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~ 292 (345)
+.|+++ +++. | -++++-.++.+++.++..++|++|.....| |+.++.. ................
T Consensus 149 a~Dl~~~dw~~~L~~~G~d~~~pt~~iaEGLl~YL~~~~v~~ll~~I~~~~~~---gS~~~~~-~~~~~~~~~~~~~~~~ 224 (297)
T COG3315 149 AVDLREDDWPQALAAAGFDRSRPTLWIAEGLLMYLPEEAVDRLLSRIAALSAP---GSRVAFD-YSLPGSLRDRLRRPAA 224 (297)
T ss_pred eccccccchHHHHHhcCCCcCCCeEEEeccccccCCHHHHHHHHHHHHHhCCC---CceEEEe-ccccHHHHhcccchhh
Confidence 999995 5541 2 478889999999999999999999999999 7766655 3211111000000000
Q ss_pred hhccchhhhhhc-CCCccCCHHHHHHHHHHCCCCceEE
Q 044482 293 ILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 293 ~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
...+........ ..-......+++.++.+.||.....
T Consensus 225 ~~~~~~~~~~~~e~~~~~~~~~e~~~~l~~~g~~~~~~ 262 (297)
T COG3315 225 RKTMRGEDLDRGELVYFGDDPAEIETWLAERGWRSTLN 262 (297)
T ss_pred hhhccccccccccceeccCCHHHHHHHHHhcCEEEEec
Confidence 000000000000 0112345789999999999987665
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.00026 Score=60.21 Aligned_cols=142 Identities=15% Similarity=0.142 Sum_probs=81.4
Q ss_pred ccc-ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCc--CCC-CC---CEEEeccccccCC
Q 044482 177 FKE-LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFV--NVP-SG---QAIFTKSVLLNWS 248 (345)
Q Consensus 177 ~~~-~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~--~~p-~~---D~i~~~~vlh~~~ 248 (345)
|.. ..++||+|.|.|..+..++..+.+ +..-++ ..|... ++-..-+... ++- .+ |+|.|-++|--..
T Consensus 109 w~~~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~r---L~kk~ynVl~~~ew~~t~~k~dli~clNlLDRc~ 183 (288)
T KOG3987|consen 109 WGQEPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDR---LKKKNYNVLTEIEWLQTDVKLDLILCLNLLDRCF 183 (288)
T ss_pred cCCCCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHH---HhhcCCceeeehhhhhcCceeehHHHHHHHHhhc
Confidence 544 578999999999999888766643 122222 223332 2222223333 111 22 9999999996555
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC--CCchhhhhhhccchhhhhhcCCCccC--CHHHHHHHHHHCCC
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP--EFSSINRNILTLDIVMYDLFPQAKGR--TAGEFKALAMAAGF 324 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~--~~~~~~~~~~~~d~~~~~~~~~~~~r--t~~e~~~ll~~aGf 324 (345)
++ -++|+.++.+|.|+ .|++++. .++|-.. +.+.... ..--| ..+-. +|+.+ ....+.++|+++||
T Consensus 184 ~p--~kLL~Di~~vl~ps--ngrviva--LVLP~~hYVE~N~~g~-~~rPd-n~Le~--~Gr~~ee~v~~~~e~lr~~g~ 253 (288)
T KOG3987|consen 184 DP--FKLLEDIHLVLAPS--NGRVIVA--LVLPYMHYVETNTSGL-PLRPD-NLLEN--NGRSFEEEVARFMELLRNCGY 253 (288)
T ss_pred Ch--HHHHHHHHHHhccC--CCcEEEE--EEecccceeecCCCCC-cCCch-HHHHh--cCccHHHHHHHHHHHHHhcCc
Confidence 55 58999999999996 7887765 3333210 0000000 00001 11111 44433 23356789999999
Q ss_pred CceEEEecC
Q 044482 325 GTIKVICRS 333 (345)
Q Consensus 325 ~~~~~~~~~ 333 (345)
.+...+..|
T Consensus 254 ~veawTrlP 262 (288)
T KOG3987|consen 254 RVEAWTRLP 262 (288)
T ss_pred hhhhhhcCC
Confidence 988777765
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.017 Score=50.39 Aligned_cols=129 Identities=17% Similarity=0.114 Sum_probs=89.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh---HhhhCC------CceEEeccCCcCC--CC-CCEEEecccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY---VIKNAP------CVEHVEGDMFVNV--PS-GQAIFTKSVLLN 246 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~---~i~~a~------ri~~~~gd~~~~~--p~-~D~i~~~~vlh~ 246 (345)
..+++|||.|.|.-+.-++=.+|+++++.+|. .. -++.+. +++++.+.+.+-. +. -|+|.++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAva-- 145 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAVA-- 145 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehcc--
Confidence 58999999999999999999999999999997 21 233332 6889998877622 24 6999988775
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
....++.-+...+++ ||.++.. -.. .+++ -..+.+.....-|+++
T Consensus 146 ----~L~~l~e~~~pllk~---~g~~~~~-k~~--------------------------~~~~-e~~e~~~a~~~~~~~~ 190 (215)
T COG0357 146 ----SLNVLLELCLPLLKV---GGGFLAY-KGL--------------------------AGKD-ELPEAEKAILPLGGQV 190 (215)
T ss_pred ----chHHHHHHHHHhccc---CCcchhh-hHH--------------------------hhhh-hHHHHHHHHHhhcCcE
Confidence 224567777788888 8877655 110 0000 1345567777888888
Q ss_pred eEEEecC--C---ceEEEEEEcCC
Q 044482 327 IKVICRS--Y---CYWVIEFYKPK 345 (345)
Q Consensus 327 ~~~~~~~--~---~~~vi~~~k~~ 345 (345)
.++.... . ...++..+|+|
T Consensus 191 ~~~~~~~~p~~~~~r~l~ii~~~k 214 (215)
T COG0357 191 EKVFSLTVPELDGERHLVIIRKRK 214 (215)
T ss_pred EEEEEeecCCCCCceEEEEEeccC
Confidence 8886653 2 25566666654
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0018 Score=61.76 Aligned_cols=86 Identities=9% Similarity=-0.009 Sum_probs=64.7
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--C-CCEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--S-GQAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~-~D~i~~~~vlh~~ 247 (345)
.+|||++||+|..+..++.+.+..+++++|. |..++.++ ++++..+|+.+.+. . .|+|++.- .
T Consensus 59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP-~--- 134 (382)
T PRK04338 59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP-F--- 134 (382)
T ss_pred CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC-C---
Confidence 5899999999999999999887668999999 77776655 35688888865322 2 39888753 1
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. ...+|..+.+.+++ ||.++|.
T Consensus 135 Gs--~~~~l~~al~~~~~---~gilyvS 157 (382)
T PRK04338 135 GS--PAPFLDSAIRSVKR---GGLLCVT 157 (382)
T ss_pred CC--cHHHHHHHHHHhcC---CCEEEEE
Confidence 11 13577887788899 8888877
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0022 Score=52.12 Aligned_cols=38 Identities=16% Similarity=0.184 Sum_probs=33.8
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
+++|||||.|.++..+++.+|+.+++.+|. |.+.+.++
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 589999999999999999999999999998 77766554
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.053 Score=47.00 Aligned_cols=127 Identities=16% Similarity=0.157 Sum_probs=90.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C-C-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S-G-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~-~-D~i~~~~vl 244 (345)
...++.||||-+|.+...+.+.+|...++..|. +.-++.|. +++...+|-+.++. . . |++++...
T Consensus 16 ~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAGM- 94 (226)
T COG2384 16 QGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAGM- 94 (226)
T ss_pred cCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeCC-
Confidence 334599999999999999999999999999998 55444433 89999999988554 3 3 87776643
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.-.-...||.+-.+-|+. --++++. | + . ...++++||.+.+|
T Consensus 95 ---GG~lI~~ILee~~~~l~~---~~rlILQ-----P-n-------------------~-------~~~~LR~~L~~~~~ 136 (226)
T COG2384 95 ---GGTLIREILEEGKEKLKG---VERLILQ-----P-N-------------------I-------HTYELREWLSANSY 136 (226)
T ss_pred ---cHHHHHHHHHHhhhhhcC---cceEEEC-----C-C-------------------C-------CHHHHHHHHHhCCc
Confidence 444557788888888875 3355555 1 1 0 14567899999999
Q ss_pred CceEEEecC--C-ceEEEEEEcC
Q 044482 325 GTIKVICRS--Y-CYWVIEFYKP 344 (345)
Q Consensus 325 ~~~~~~~~~--~-~~~vi~~~k~ 344 (345)
.++.-+=+. + .+-+|.+.+.
T Consensus 137 ~I~~E~ileE~~kiYEIlv~e~~ 159 (226)
T COG2384 137 EIKAETILEEDGKIYEILVVEKS 159 (226)
T ss_pred eeeeeeeecccCeEEEEEEEecC
Confidence 887654443 2 3556666654
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0054 Score=55.51 Aligned_cols=92 Identities=14% Similarity=0.155 Sum_probs=55.0
Q ss_pred ccceEEecCCc-cHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCC-CC-CEEEecc
Q 044482 180 LKKLVDVASCL-GANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVP-SG-QAIFTKS 242 (345)
Q Consensus 180 ~~~vlDiGgG~-G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p-~~-D~i~~~~ 242 (345)
+.+|+=||+|. -..+..+++++ ++..++++|. |+.++.++ +++|+.+|..+ +.. .. |+|++..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 46999999995 45556666554 6788999998 66555443 89999999876 332 33 9999887
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..- .+.++..++|.++.+.|+| |.++++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~---ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAP---GARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-T---TSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCC---CcEEEEe
Confidence 764 3344557999999999999 8866665
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0018 Score=55.94 Aligned_cols=87 Identities=18% Similarity=0.229 Sum_probs=58.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~--D~i~~~~v 243 (345)
..+..+|+|.-||.|.++..+++..+..+++..|+ |..++..+ ++..+.+|..+-.+.+ |-|+|...
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp 178 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP 178 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence 34668999999999999999999887888999999 76655333 6889999988744333 87777532
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
. .+...|..+.+.+++ ||.+
T Consensus 179 -----~-~~~~fl~~~~~~~~~---~g~i 198 (200)
T PF02475_consen 179 -----E-SSLEFLDAALSLLKE---GGII 198 (200)
T ss_dssp -----S-SGGGGHHHHHHHEEE---EEEE
T ss_pred -----H-HHHHHHHHHHHHhcC---CcEE
Confidence 2 224578888888888 7644
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.021 Score=48.11 Aligned_cols=45 Identities=18% Similarity=0.255 Sum_probs=35.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhH
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYV 214 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~ 214 (345)
|-+.|.-+....+|||+||..|.++.-..++. |+..+.++|+-++
T Consensus 60 indKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~ 105 (232)
T KOG4589|consen 60 INDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI 105 (232)
T ss_pred ehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec
Confidence 34455534567899999999999999988875 9999999998543
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0035 Score=59.22 Aligned_cols=48 Identities=8% Similarity=0.057 Sum_probs=39.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.++||++||+|.++..+++... +++++|. +++++.++ +++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4699999999999999998874 7999998 77877666 56788887754
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.02 Score=59.11 Aligned_cols=105 Identities=14% Similarity=0.051 Sum_probs=69.1
Q ss_pred HHHHHHhccCc-ccccceEEecCCccHHHHHHHHHC------------------------------------------CC
Q 044482 167 MKKILEIYKGF-KELKKLVDVASCLGANMSLIVNTY------------------------------------------PQ 203 (345)
Q Consensus 167 ~~~i~~~~~~~-~~~~~vlDiGgG~G~~~~~l~~~~------------------------------------------p~ 203 (345)
+..++..-. | .+...++|-.||+|+++++.+... +.
T Consensus 178 Aaa~l~~a~-w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~ 256 (702)
T PRK11783 178 AAAILLRSG-WPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELP 256 (702)
T ss_pred HHHHHHHcC-CCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccC
Confidence 444555444 6 446789999999999998876531 12
Q ss_pred CeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC-C---CCEEEecccc-ccCC-hhHHHHHHHHHHhhCC-
Q 044482 204 ITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP-S---GQAIFTKSVL-LNWS-DEQCLKILKNCYDALP- 264 (345)
Q Consensus 204 ~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~---~D~i~~~~vl-h~~~-d~~~~~iL~~~~~aL~- 264 (345)
.+++++|+ +.+++.|+ ++++..+|+.+ +.+ . .|+|+++--. ..+. +++...+.+++.+.++
T Consensus 257 ~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~ 336 (702)
T PRK11783 257 SKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQ 336 (702)
T ss_pred ceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHH
Confidence 36899998 88888766 58899999987 443 2 2888887322 1222 2344455555444444
Q ss_pred --CCCCCcEEEEE
Q 044482 265 --KSRKHGRTQLR 275 (345)
Q Consensus 265 --p~~~gG~lli~ 275 (345)
+ |+++.++
T Consensus 337 ~~~---g~~~~ll 346 (702)
T PRK11783 337 QFG---GWNAALF 346 (702)
T ss_pred hCC---CCeEEEE
Confidence 7 8888777
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.013 Score=57.40 Aligned_cols=99 Identities=19% Similarity=0.221 Sum_probs=68.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC-CEEEe-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG-QAIFT- 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~-D~i~~- 240 (345)
-....+|||+++|.|.-+..+++...+ ..++..|+ +.-++..+ ++.+...|... .++.. |.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 456689999999999999999998654 57889998 44333322 56666677653 22333 88873
Q ss_pred ---c---------cccccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 ---K---------SVLLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 ---~---------~vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+ .+...|+.++. .+||+++.+.|+| ||+|+-. ...
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~Lkp---GG~LVYS-TCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKP---GGTLVYS-TCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE-CCC
Confidence 3 12234555533 5899999999999 9988655 443
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.0094 Score=55.26 Aligned_cols=96 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred cccccceEEecCCccHHHHHHHHH-------CCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCCC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-------YPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVPS-- 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-------~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p~-- 234 (345)
-....+|+|-+||+|.++.++.+. .+..+++++|+ +.++..++ ......+|.+. +...
T Consensus 44 ~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~~d~l~~~~~~~~ 123 (311)
T PF02384_consen 44 PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQGDSLENDKFIKN 123 (311)
T ss_dssp T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEES-TTTSHSCTST
T ss_pred ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccccccccccccccc
Confidence 445678999999999999998874 47788999999 65555443 34578899887 3322
Q ss_pred -C-CEEEec--cccccCChh-----------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTK--SVLLNWSDE-----------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~--~vlh~~~d~-----------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++ +....|.+. .-...+.++.+.|++ ||++.++
T Consensus 124 ~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~---~G~~~~I 182 (311)
T PF02384_consen 124 QKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKP---GGRAAII 182 (311)
T ss_dssp --EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred cccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhccc---ccceeEE
Confidence 2 998886 232322111 112478889999999 9998766
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.028 Score=47.87 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=60.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCc-CC----C------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFV-NV----P------SG 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~-~~----p------~~ 235 (345)
+...||-+|||-=+....+...+++++.+-+|+|++++..+ ++++++.|+.+ .+ . +.
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~ 157 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDR 157 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCC
Confidence 44589999999999999999988899999999999877544 36789999985 21 1 12
Q ss_pred -CEEEeccccccCChhHHHHHHHHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCY 260 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~ 260 (345)
-++++-.++.+++.+++..+|+.++
T Consensus 158 ptl~i~Egvl~Yl~~~~~~~ll~~ia 183 (183)
T PF04072_consen 158 PTLFIAEGVLMYLSPEQVDALLRAIA 183 (183)
T ss_dssp EEEEEEESSGGGS-HHHHHHHHHHH-
T ss_pred CeEEEEcchhhcCCHHHHHHHHHHhC
Confidence 5788889999999999999998764
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.023 Score=52.76 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=58.6
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCC-CC--CEEEeccccccCChhH
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVP-SG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p-~~--D~i~~~~vlh~~~d~~ 251 (345)
....++|||||++|.++..++++ +.+++.+|..++-+... +|++..+|.+...| .+ |.+++--+. .+.
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVcDmve---~P~- 283 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVCDMVE---KPA- 283 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEEeccc---CHH-
Confidence 45679999999999999999988 45999999855544322 89999999988554 33 888877663 333
Q ss_pred HHHHHHHHHhhCCC
Q 044482 252 CLKILKNCYDALPK 265 (345)
Q Consensus 252 ~~~iL~~~~~aL~p 265 (345)
++++-+.+.|..
T Consensus 284 --rva~lm~~Wl~~ 295 (357)
T PRK11760 284 --RVAELMAQWLVN 295 (357)
T ss_pred --HHHHHHHHHHhc
Confidence 445555555655
|
|
| >PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.00028 Score=46.97 Aligned_cols=44 Identities=14% Similarity=0.117 Sum_probs=37.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID 89 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~ 89 (345)
|.+.+ ...+.+.|+.|||+++|+ +...+.|+|..|+..|+++++
T Consensus 8 iL~~l-~~~~~~~t~~eia~~~gl-------~~stv~r~L~tL~~~g~v~~d 51 (52)
T PF09339_consen 8 ILEAL-AESGGPLTLSEIARALGL-------PKSTVHRLLQTLVEEGYVERD 51 (52)
T ss_dssp HHHCH-HCTBSCEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHH-HcCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCcCeecC
Confidence 67777 444557899999999999 678999999999999999875
|
One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D. |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.0056 Score=58.08 Aligned_cols=48 Identities=8% Similarity=0.052 Sum_probs=39.1
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.++||++||+|.++..+++... +++++|. +.+++.++ +++++.+|+.+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 4799999999999999998864 7899998 77777665 56777777654
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0072 Score=57.02 Aligned_cols=96 Identities=16% Similarity=0.135 Sum_probs=74.7
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhh-HhhhCC----------CceEEeccCCc-CCCCC--CEEEecccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPY-VIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~-~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~ 246 (345)
..++|+|||.|.....+.. +.....+++|... -+..+. +..++.+|+.+ ++++. |.+.+..+..|
T Consensus 112 ~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~~~~ 190 (364)
T KOG1269|consen 112 SKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEVVCH 190 (364)
T ss_pred ccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEeeccc
Confidence 4789999999999998875 4456778888732 222222 56678899998 67754 99888888888
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
.++.. .++++++++++| ||.+++- |.+....
T Consensus 191 ~~~~~--~~y~Ei~rv~kp---GG~~i~~-e~i~~~~ 221 (364)
T KOG1269|consen 191 APDLE--KVYAEIYRVLKP---GGLFIVK-EWIKTAK 221 (364)
T ss_pred CCcHH--HHHHHHhcccCC---CceEEeH-HHHHhhh
Confidence 88874 789999999999 9999888 8886554
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0044 Score=55.26 Aligned_cols=76 Identities=34% Similarity=0.589 Sum_probs=59.1
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhh----------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHT----------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~----------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
.++|.++|+++.++|+....|..+|...+ +.++...-.++|.+||.|.-+.+|+++.+-++++.+|.|..
T Consensus 56 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v 135 (241)
T PF00891_consen 56 KAFGTPFFEYLEEDPELAKRFNAAMAEYSRLNAFDILLEAFDFSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEV 135 (241)
T ss_dssp HHHSS-HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHH
T ss_pred HhcCCcHHHhhhhChHHHHHHHHHHHhhhhcchhhhhhccccccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhh
Confidence 45688999999999999999988775432 33443355688999999999999999999999999999988
Q ss_pred ccccCC
Q 044482 73 IENASS 78 (345)
Q Consensus 73 l~rlL~ 78 (345)
++..-+
T Consensus 136 ~~~~~~ 141 (241)
T PF00891_consen 136 IEQAKE 141 (241)
T ss_dssp HCCHHH
T ss_pred hhcccc
Confidence 766555
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.13 Score=46.88 Aligned_cols=135 Identities=14% Similarity=0.088 Sum_probs=88.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhh------HhhhCC----------------------------------
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPY------VIKNAP---------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~------~i~~a~---------------------------------- 219 (345)
..+||-=|||.|.++..|+...+.+++--+..-- ++...+
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 4578889999999999999988887664222110 111111
Q ss_pred --------CceEEeccCCc--CCCC--C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC
Q 044482 220 --------CVEHVEGDMFV--NVPS--G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE 285 (345)
Q Consensus 220 --------ri~~~~gd~~~--~~p~--~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~ 285 (345)
..+...|||.+ +.++ + |+|+..+.+- +-.....-|..|...|+| ||..+=+ .+.+-.-..
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFID--Ta~NileYi~tI~~iLk~---GGvWiNl-GPLlYHF~d 304 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFID--TAHNILEYIDTIYKILKP---GGVWINL-GPLLYHFED 304 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEee--chHHHHHHHHHHHHhccC---CcEEEec-cceeeeccC
Confidence 34557899998 3443 2 8888886662 344567889999999999 8866655 333322111
Q ss_pred CchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 286 FSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 286 ~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.+ + ... ..+-+.+.+++..+.+.-||++++...+.
T Consensus 305 ~~---------g---~~~-~~siEls~edl~~v~~~~GF~~~ke~~Id 339 (369)
T KOG2798|consen 305 TH---------G---VEN-EMSIELSLEDLKRVASHRGFEVEKERGID 339 (369)
T ss_pred CC---------C---Ccc-cccccccHHHHHHHHHhcCcEEEEeeeee
Confidence 10 0 011 13567899999999999999998876553
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.052 Score=46.84 Aligned_cols=110 Identities=18% Similarity=0.170 Sum_probs=77.2
Q ss_pred HHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--------CceEEec---c
Q 044482 159 MQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--------CVEHVEG---D 227 (345)
Q Consensus 159 m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--------ri~~~~g---d 227 (345)
|.....+.+...++.+ ..+..+||.||=|-|.....+.++.|..+.|+---|.|.+..+ ++....| |
T Consensus 83 Mm~WEtpiMha~A~ai--~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeD 160 (271)
T KOG1709|consen 83 MMRWETPIMHALAEAI--STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWED 160 (271)
T ss_pred hhhhhhHHHHHHHHHH--hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHh
Confidence 4444444444444443 3677899999999999999999998887777666688887665 6666666 5
Q ss_pred CCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 228 MFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 228 ~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+|++ |-|+.-..-.+ -++.....+.+.+.||| +|.+--+
T Consensus 161 vl~~L~d~~FDGI~yDTy~e~--yEdl~~~hqh~~rLLkP---~gv~Syf 205 (271)
T KOG1709|consen 161 VLNTLPDKHFDGIYYDTYSEL--YEDLRHFHQHVVRLLKP---EGVFSYF 205 (271)
T ss_pred hhccccccCcceeEeechhhH--HHHHHHHHHHHhhhcCC---CceEEEe
Confidence 55567754 77766543222 24556788899999999 9877665
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.033 Score=55.64 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=44.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCC--------CeEEEeeh-hhHhhhCC---------CceEEeccCCcC-C------C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ--------ITGINFDL-PYVIKNAP---------CVEHVEGDMFVN-V------P 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~--------~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~-~------p 233 (345)
...+|+|.|||+|.++.+++++.+. ..++++|+ +..++.++ .++...+|++.. . .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999999987752 46789998 66665443 345566665541 1 1
Q ss_pred CC-CEEEec
Q 044482 234 SG-QAIFTK 241 (345)
Q Consensus 234 ~~-D~i~~~ 241 (345)
.. |+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 23 999886
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.1 Score=44.48 Aligned_cols=98 Identities=11% Similarity=0.188 Sum_probs=66.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEecccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~ 246 (345)
+-..++|||+|.|+|..+++-++.- ...++.-|. |......+ .|.+...|..- .|.+ |+++...++++
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g-~~~~~Dl~LagDlfy~ 154 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG-SPPAFDLLLAGDLFYN 154 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC-CCcceeEEEeeceecC
Confidence 5567899999999999998877654 234555555 44443333 67788888766 3334 99999999965
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
-+ .+.+++. +.+.++.. |..++|. |.-.+.
T Consensus 155 ~~--~a~~l~~-~~~~l~~~--g~~vlvg-dp~R~~ 184 (218)
T COG3897 155 HT--EADRLIP-WKDRLAEA--GAAVLVG-DPGRAY 184 (218)
T ss_pred ch--HHHHHHH-HHHHHHhC--CCEEEEe-CCCCCC
Confidence 44 4456677 66777661 5566666 655443
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.13 Score=44.81 Aligned_cols=141 Identities=14% Similarity=0.073 Sum_probs=87.8
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-h----hHhhhCC---CceEEeccCCcCCC-----CC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-P----YVIKNAP---CVEHVEGDMFVNVP-----SG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p----~~i~~a~---ri~~~~gd~~~~~p-----~~-D~i~~~ 241 (345)
+....+||-+|..+|++...+..-- |+-.+.+++. | +.+..|+ ||--+-.|...|.. +. |+|+.-
T Consensus 71 ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P~~Y~~lv~~VDvI~~D 150 (229)
T PF01269_consen 71 IKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHPEKYRMLVEMVDVIFQD 150 (229)
T ss_dssp --TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSGGGGTTTS--EEEEEEE
T ss_pred CCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCChHHhhcccccccEEEec
Confidence 7778899999999999999999864 4777888887 4 3455555 56666688876432 23 777654
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
=. .++++.-+..++..-||+ ||.++|. =- ....|. + ....-...+-.+.|++
T Consensus 151 Va----Qp~Qa~I~~~Na~~fLk~---gG~~~i~-iK--------------a~siD~-----t-~~p~~vf~~e~~~L~~ 202 (229)
T PF01269_consen 151 VA----QPDQARIAALNARHFLKP---GGHLIIS-IK--------------ARSIDS-----T-ADPEEVFAEEVKKLKE 202 (229)
T ss_dssp -S----STTHHHHHHHHHHHHEEE---EEEEEEE-EE--------------HHHH-S-----S-SSHHHHHHHHHHHHHC
T ss_pred CC----ChHHHHHHHHHHHhhccC---CcEEEEE-Ee--------------cCcccC-----c-CCHHHHHHHHHHHHHH
Confidence 22 245667788889899999 9988877 10 011111 0 0000012233567788
Q ss_pred CCCCceEEEecCC---ceEEEEEEcCC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKPK 345 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~~ 345 (345)
.||+..+...+.+ .+.++.++..|
T Consensus 203 ~~~~~~e~i~LePy~~dH~~vv~~y~~ 229 (229)
T PF01269_consen 203 EGFKPLEQITLEPYERDHAMVVGRYRK 229 (229)
T ss_dssp TTCEEEEEEE-TTTSTTEEEEEEEE--
T ss_pred cCCChheEeccCCCCCCcEEEEEEecC
Confidence 9999999988854 47777777543
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.0076 Score=46.27 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=38.4
Q ss_pred EEecCCccHHHHHHHHHCCCC---eEEEeeh-h---hHhhhCC------CceEEeccCCcC---CC-CC-CEEEeccccc
Q 044482 184 VDVASCLGANMSLIVNTYPQI---TGINFDL-P---YVIKNAP------CVEHVEGDMFVN---VP-SG-QAIFTKSVLL 245 (345)
Q Consensus 184 lDiGgG~G~~~~~l~~~~p~~---~~~~~Dl-p---~~i~~a~------ri~~~~gd~~~~---~p-~~-D~i~~~~vlh 245 (345)
|+||+..|..+..+++..+.. +++.+|. + ..-+..+ +++++.+|..+. ++ .. |++++-. -|
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg-~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG-DH 79 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES---
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC-CC
Confidence 689999999999999876654 5899998 4 2322222 899999998763 33 23 8877654 22
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEec
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSK 277 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d 277 (345)
+.+.+..-|+.+.+.|+| ||.|++. |
T Consensus 80 --~~~~~~~dl~~~~~~l~~---ggviv~d-D 105 (106)
T PF13578_consen 80 --SYEAVLRDLENALPRLAP---GGVIVFD-D 105 (106)
T ss_dssp ---HHHHHHHHHHHGGGEEE---EEEEEEE--
T ss_pred --CHHHHHHHHHHHHHHcCC---CeEEEEe-C
Confidence 235567789999999999 8876665 5
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=48.39 Aligned_cols=144 Identities=22% Similarity=0.186 Sum_probs=79.2
Q ss_pred cccccceEEecCCccHHHHHHH--------HHC--------CCCeEEEeehhhH--------hhhC-------C--CceE
Q 044482 177 FKELKKLVDVASCLGANMSLIV--------NTY--------PQITGINFDLPYV--------IKNA-------P--CVEH 223 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~--------~~~--------p~~~~~~~Dlp~~--------i~~a-------~--ri~~ 223 (345)
.+..-+|+|+||.+|..+..+. +++ |+++++.-|+|.- +..- + -+.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4456789999999999876654 222 3467888899741 1111 2 3567
Q ss_pred EeccCCc-CCCCC--CEEEeccccccCCh-------------------------h------------HHHHHHHHHHhhC
Q 044482 224 VEGDMFV-NVPSG--QAIFTKSVLLNWSD-------------------------E------------QCLKILKNCYDAL 263 (345)
Q Consensus 224 ~~gd~~~-~~p~~--D~i~~~~vlh~~~d-------------------------~------------~~~~iL~~~~~aL 263 (345)
++|.|+. -+|++ |+++.++.||.++. + +...+|+.=++-|
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 7899999 67865 99999999987652 1 2234555556678
Q ss_pred CCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch-----hhhhhcCCC--------------ccCCHHHHHHHHHHCC-
Q 044482 264 PKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI-----VMYDLFPQA--------------KGRTAGEFKALAMAAG- 323 (345)
Q Consensus 264 ~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~-----~~~~~~~~~--------------~~rt~~e~~~ll~~aG- 323 (345)
+| ||++++. =.-.++..... ......+++ .-|+. .| ..++.+|+++.+++.|
T Consensus 174 v~---GG~mvl~-~~gr~~~~~~~--~~~~~~~~~l~~~l~dMv~--eGlI~~ek~dsfniP~Y~ps~eEv~~~I~~~gs 245 (334)
T PF03492_consen 174 VP---GGRMVLT-FLGRDEEDPSS--TGSCMLWDLLADALRDMVA--EGLISEEKVDSFNIPIYFPSPEEVRAIIEEEGS 245 (334)
T ss_dssp EE---EEEEEEE-EEE-STSSTTS--TTCCCHHHHHHHHHHHHHH--TTSS-HCCCCTG--SBB---HHHHHHHHHHHTS
T ss_pred cc---CcEEEEE-Eeecccccccc--CCcchHHHHHHHHHHHHHH--cCCcCHHHhhceeCCccCCCHHHHHHHHhcCCC
Confidence 99 9998888 54444411100 000011111 11221 22 3579999999999987
Q ss_pred CCceE
Q 044482 324 FGTIK 328 (345)
Q Consensus 324 f~~~~ 328 (345)
|++.+
T Consensus 246 F~I~~ 250 (334)
T PF03492_consen 246 FEIEK 250 (334)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 54433
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.16 Score=46.21 Aligned_cols=151 Identities=11% Similarity=0.090 Sum_probs=98.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC--CCCeEEEeehhhHhhhCC---------------------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY--PQITGINFDLPYVIKNAP--------------------------- 219 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dlp~~i~~a~--------------------------- 219 (345)
.+++. +.....|+-+|||.-.....+...+ +.+.++-+|.|++++.--
T Consensus 80 ~Fl~~---~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD~~~~s~~~ 156 (335)
T KOG2918|consen 80 AFLEQ---TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDEDVVDLSGTD 156 (335)
T ss_pred HHHHh---cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhccccccccccCcce
Confidence 45554 4466789999999999999999988 788999999988765211
Q ss_pred ----CceEEeccCCc--CC----CC-C------CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 220 ----CVEHVEGDMFV--NV----PS-G------QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 220 ----ri~~~~gd~~~--~~----p~-~------D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|...+..|..+ .+ .. + -+++.--+|-+.+++++..+++.+.+..+. +.+++. |++.+.
T Consensus 157 l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~----a~fv~Y-EQi~~~ 231 (335)
T KOG2918|consen 157 LHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFEN----AHFVNY-EQINPN 231 (335)
T ss_pred eccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCc----ccEEEE-eccCCC
Confidence 34445555442 11 01 1 234445677788999999999999988876 678888 998865
Q ss_pred CCCCchhhh--hhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 283 SPEFSSINR--NILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 283 ~~~~~~~~~--~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++=+..... ...-.++.-+ -..-|.+..++-+.++||+.+.+.++
T Consensus 232 D~Fg~vM~~nlk~r~~~L~gl-----e~y~s~Esq~~Rf~~~Gw~~v~a~Dm 278 (335)
T KOG2918|consen 232 DRFGKVMLANLKRRGCPLHGL-----ETYNSIESQRSRFLKAGWEYVIAVDM 278 (335)
T ss_pred ChHHHHHHHHHHhcCCCCchh-----hhcccHHHHHHHHHhcCCceeehhhH
Confidence 531110000 0000111101 12357889999999999998877554
|
|
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.8 Score=39.33 Aligned_cols=146 Identities=15% Similarity=0.108 Sum_probs=94.5
Q ss_pred HHHHh---ccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh----HhhhCC---CceEEeccCCcCCC----
Q 044482 169 KILEI---YKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY----VIKNAP---CVEHVEGDMFVNVP---- 233 (345)
Q Consensus 169 ~i~~~---~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~----~i~~a~---ri~~~~gd~~~~~p---- 233 (345)
.|+.. ++ .+...+||=+|..+|++...+..-.++-.+.+++. |. .+..++ |+--+-+|+..|..
T Consensus 64 aIl~Gl~~~p-i~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~P~~Y~~~ 142 (231)
T COG1889 64 AILKGLKNFP-IKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARKPEKYRHL 142 (231)
T ss_pred HHHcCcccCC-cCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCCcHHhhhh
Confidence 45444 44 77889999999999999999999888767777776 33 355555 56666688876543
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
+. |+|+.- | -.++++.-+..++..-|++ ||.++|. =-.. ..|. +...++ .
T Consensus 143 Ve~VDviy~D-V---AQp~Qa~I~~~Na~~FLk~---~G~~~i~-iKAr--------------SIdv-----T~dp~~-v 194 (231)
T COG1889 143 VEKVDVIYQD-V---AQPNQAEILADNAEFFLKK---GGYVVIA-IKAR--------------SIDV-----TADPEE-V 194 (231)
T ss_pred cccccEEEEe-c---CCchHHHHHHHHHHHhccc---CCeEEEE-EEee--------------cccc-----cCCHHH-H
Confidence 23 877643 1 1355666778888999999 8876665 1111 1110 000000 0
Q ss_pred HHHHHHHHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 312 AGEFKALAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
..+-.+-|++.||++.+...+.+ .|.+|.+.+
T Consensus 195 f~~ev~kL~~~~f~i~e~~~LePye~DH~~i~~~~ 229 (231)
T COG1889 195 FKDEVEKLEEGGFEILEVVDLEPYEKDHALIVAKY 229 (231)
T ss_pred HHHHHHHHHhcCceeeEEeccCCcccceEEEEEee
Confidence 22234667889999999988853 477777654
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.059 Score=50.57 Aligned_cols=107 Identities=16% Similarity=0.243 Sum_probs=76.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh---hhHhhhCC----------------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL---PYVIKNAP----------------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl---p~~i~~a~----------------ri~~~~gd~ 228 (345)
..+.+.+. ........|+|+|.|.....++.......-+++.+ |.-+...+ .++.+.|+|
T Consensus 182 ~si~dEl~-~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 182 RSIVDELK-LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred HHHHHHhc-cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 34555555 66778899999999999988876654444555555 33222221 488889998
Q ss_pred CcCC------CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 229 FVNV------PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 229 ~~~~------p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
..+- +++++|+++++. |+++...++= ++..-+++ |-||+-. +.+.+-
T Consensus 261 ~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr~~-eil~~ck~---gtrIiS~-~~L~~r 313 (419)
T KOG3924|consen 261 LDPKRVTEIQTEATVIFVNNVA--FDPELKLRSK-EILQKCKD---GTRIISS-KPLVPR 313 (419)
T ss_pred CCHHHHHHHhhcceEEEEeccc--CCHHHHHhhH-HHHhhCCC---cceEecc-cccccc
Confidence 8731 235999999997 6666655544 88899999 9999998 888774
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.017 Score=47.42 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=60.5
Q ss_pred cceEEecCCccH-HHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC--CC-C--CCEEEec
Q 044482 181 KKLVDVASCLGA-NMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN--VP-S--GQAIFTK 241 (345)
Q Consensus 181 ~~vlDiGgG~G~-~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~--~p-~--~D~i~~~ 241 (345)
.+|+++|||--. .+..++.+-|...+.+-|- ...++..+ ++..+.-+.... +. + .|+|++.
T Consensus 31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIlaA 110 (201)
T KOG3201|consen 31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILAA 110 (201)
T ss_pred HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEec
Confidence 689999999544 4555666678888888886 33333322 444444443331 11 2 2999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++ |=|+....+.+.|...|+| .|+-++.
T Consensus 111 DCl--FfdE~h~sLvdtIk~lL~p---~g~Al~f 139 (201)
T KOG3201|consen 111 DCL--FFDEHHESLVDTIKSLLRP---SGRALLF 139 (201)
T ss_pred cch--hHHHHHHHHHHHHHHHhCc---ccceeEe
Confidence 988 3455567899999999999 7887777
|
|
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.036 Score=50.69 Aligned_cols=94 Identities=16% Similarity=0.200 Sum_probs=67.1
Q ss_pred cceEEecCCccHHHHHHHHHC--------------------CCCeEEEeeh---hhHhhh-------C------------
Q 044482 181 KKLVDVASCLGANMSLIVNTY--------------------PQITGINFDL---PYVIKN-------A------------ 218 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~--------------------p~~~~~~~Dl---p~~i~~-------a------------ 218 (345)
.+||-||||.|.=..+++..+ |.+.++.+|+ ..|+.. .
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 689999999998777776655 2367899998 344432 1
Q ss_pred C-------CceEEeccCCc-CCCC--------C-CEEEeccccccC---ChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 219 P-------CVEHVEGDMFV-NVPS--------G-QAIFTKSVLLNW---SDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 219 ~-------ri~~~~gd~~~-~~p~--------~-D~i~~~~vlh~~---~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
. +++|.+.|+++ ..++ . ++|.+-..++.+ +-.+-.++|.++-..++| |..++|+ |.
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~---GslLLVv-DS 243 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPP---GSLLLVV-DS 243 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCC---CcEEEEE-cC
Confidence 0 68899999987 3221 2 666655555432 345668999999999999 9999999 54
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.027 Score=49.93 Aligned_cols=86 Identities=14% Similarity=0.115 Sum_probs=60.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC--CCEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS--GQAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~--~D~i~~~~vlh~~ 247 (345)
.+.+|+|||||.==++.......|+.+.++.|+ +..++... +.+....|.++..|+ .|+.++--++|-+
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLllK~lp~l 184 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALLLKTLPCL 184 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEEET-HHHH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhHHHHHHHH
Confidence 478999999999999999998999999999999 66655433 677788899986664 3999999999876
Q ss_pred ChhHHHHHHHHHHhhCCC
Q 044482 248 SDEQCLKILKNCYDALPK 265 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p 265 (345)
...+. ..--++.+.++.
T Consensus 185 e~q~~-g~g~~ll~~~~~ 201 (251)
T PF07091_consen 185 ERQRR-GAGLELLDALRS 201 (251)
T ss_dssp HHHST-THHHHHHHHSCE
T ss_pred HHHhc-chHHHHHHHhCC
Confidence 55442 233344455554
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.58 Score=41.36 Aligned_cols=99 Identities=15% Similarity=0.068 Sum_probs=56.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC---C-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS---G- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~---~- 235 (345)
-+.+..+ +. .++||=|| -.=..+.+++-.++..+++++|+ ..+++..+ .|+.+..|+..++|+ +
T Consensus 36 ~~~~~gd-L~-gk~il~lG-DDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~ 112 (243)
T PF01861_consen 36 LMAERGD-LE-GKRILFLG-DDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGK 112 (243)
T ss_dssp HHHHTT--ST-T-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-
T ss_pred HHHhcCc-cc-CCEEEEEc-CCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcC
Confidence 3445544 33 47899888 45556667777777789999999 55555333 688999999999883 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++++-=. ++.+-..-++.+..++|+.. |+..++.
T Consensus 113 fD~f~TDPP---yT~~G~~LFlsRgi~~Lk~~--g~~gy~~ 148 (243)
T PF01861_consen 113 FDVFFTDPP---YTPEGLKLFLSRGIEALKGE--GCAGYFG 148 (243)
T ss_dssp BSEEEE------SSHHHHHHHHHHHHHTB-ST--T-EEEEE
T ss_pred CCEEEeCCC---CCHHHHHHHHHHHHHHhCCC--CceEEEE
Confidence 99987643 45567778999999999982 4444443
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.7 Score=41.49 Aligned_cols=112 Identities=16% Similarity=0.180 Sum_probs=77.1
Q ss_pred HHHHHHHHhhHH----HHHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeehhhH-hhhCC--------
Q 044482 154 LFNQSMQNHTAI----VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDLPYV-IKNAP-------- 219 (345)
Q Consensus 154 ~f~~~m~~~~~~----~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dlp~~-i~~a~-------- 219 (345)
.|-.+|-..++. .+..|+..++ .....+|++-|.|+|.++-++++. -|.-+.+-+|..+. .+.|.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~-i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi 155 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLE-IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGI 155 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhc-CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCC
Confidence 344555544442 2445777777 888899999999999999999998 57788888998332 33332
Q ss_pred --CceEEeccCCc-CCC--C--CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --CVEHVEGDMFV-NVP--S--GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --ri~~~~gd~~~-~~p--~--~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.+...|+-. .++ + +|+|++ +++.+. ..+-.+++.|+.+ ||+++.+
T Consensus 156 ~~~vt~~hrDVc~~GF~~ks~~aDaVFL-----DlPaPw--~AiPha~~~lk~~--g~r~csF 209 (314)
T KOG2915|consen 156 GDNVTVTHRDVCGSGFLIKSLKADAVFL-----DLPAPW--EAIPHAAKILKDE--GGRLCSF 209 (314)
T ss_pred CcceEEEEeecccCCccccccccceEEE-----cCCChh--hhhhhhHHHhhhc--CceEEec
Confidence 68888888877 444 2 288876 455443 3356666788873 5577766
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.11 Score=49.54 Aligned_cols=86 Identities=12% Similarity=0.085 Sum_probs=65.2
Q ss_pred cceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC---CC-CEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP---SG-QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p---~~-D~i~~~~vlh 245 (345)
-+|||+-||+|..++.++.+.++ -+++..|+ |..++.++ ++++..+|+..-+. .. |+|.+-- .
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 47999999999999999998655 47899999 77666554 47788898876322 23 9988754 2
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+ ..+|..+.+.+++ ||.|+|.
T Consensus 124 Gs~----~~fld~al~~~~~---~glL~vT 146 (374)
T TIGR00308 124 GTP----APFVDSAIQASAE---RGLLLVT 146 (374)
T ss_pred CCc----HHHHHHHHHhccc---CCEEEEE
Confidence 211 2578888899999 9988887
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >TIGR02431 pcaR_pcaU beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.0059 Score=54.77 Aligned_cols=56 Identities=13% Similarity=0.007 Sum_probs=46.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.+ ....++.++.|||+++|+ +...+.|+|..|+..|++++++..|.+++....
T Consensus 14 IL~~l-~~~~~~~~l~eia~~lgl-------pksT~~RlL~tL~~~G~l~~~~~~Y~lG~~~~~ 69 (248)
T TIGR02431 14 VIEAF-GAERPRLTLTDVAEATGL-------TRAAARRFLLTLVELGYVTSDGRLFWLTPRVLR 69 (248)
T ss_pred HHHHH-hcCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCEEEecHHHHH
Confidence 66777 433457999999999999 678899999999999999987778998876543
|
Member of this family are IclR-type transcriptional regulators with similar DNA binding sites, able to bind at least three different metabolites related to protocatechuate metabolism. Beta-ketoadipate is the inducer for PcaR, p-hydroxybenzoate for PobR, and protocatechuate for PcaU. |
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=94.49 E-value=0.056 Score=41.34 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=29.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL 211 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl 211 (345)
+.-|...+. -......+|||||.|.+.--|.+. +-++.++|.
T Consensus 47 i~LW~~~~~-~~~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 47 IELWRDMYG-EQKFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred HHHHhcccC-CCCCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 333444444 345678999999999988777765 345788886
|
; GO: 0008168 methyltransferase activity |
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.19 Score=43.94 Aligned_cols=95 Identities=14% Similarity=0.165 Sum_probs=68.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeehh-h-------HhhhCC---CceEEeccCCcCCC----C---C--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDLP-Y-------VIKNAP---CVEHVEGDMFVNVP----S---G-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dlp-~-------~i~~a~---ri~~~~gd~~~~~p----~---~-- 235 (345)
.-++++.||||.=+|..+.+++.+-|+ .+++.+|.+ . +++.|. .|++++|+..+.++ + +
T Consensus 71 ~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tf 150 (237)
T KOG1663|consen 71 LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTF 150 (237)
T ss_pred HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCce
Confidence 445689999999999999999999886 578888883 2 233443 89999998887433 2 2
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|.+|+- +|.+ .....+.++.+.+++ || ++++ |.++.
T Consensus 151 DfaFvD----adK~-nY~~y~e~~l~Llr~---GG-vi~~-DNvl~ 186 (237)
T KOG1663|consen 151 DFAFVD----ADKD-NYSNYYERLLRLLRV---GG-VIVV-DNVLW 186 (237)
T ss_pred eEEEEc----cchH-HHHHHHHHHHhhccc---cc-EEEE-ecccc
Confidence 777653 3444 445889999999999 77 5555 55443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.037 Score=47.88 Aligned_cols=50 Identities=24% Similarity=0.298 Sum_probs=41.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV 230 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~ 230 (345)
....|+|.-||.|..++.++.++|. ++.+|+ |.-|..|+ ||.|++||+++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5578999999999999999999986 667776 55566655 99999999987
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.28 Score=46.84 Aligned_cols=93 Identities=15% Similarity=0.099 Sum_probs=68.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC----CC---CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP----SG---QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p----~~---D~i~ 239 (345)
..++|||+=|=||.++...+... -.+++.+|+ ...++-|+ ++.++.+|.|+.+. .+ |+|+
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 37899999999999999887653 238999999 66666655 68999999998433 23 9998
Q ss_pred ecc------ccccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKS------VLLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~------vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-= -=.-|+ ..+-.+++..+.+.|+| ||.++++
T Consensus 296 lDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~p---gG~l~~~ 335 (393)
T COG1092 296 LDPPSFARSKKQEFSAQRDYKDLNDLALRLLAP---GGTLVTS 335 (393)
T ss_pred ECCcccccCcccchhHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 721 001122 12346789999999999 9998888
|
|
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=47.14 Aligned_cols=63 Identities=17% Similarity=0.163 Sum_probs=50.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~ 230 (345)
.+++++.+. ......+||.=+|.|..+..++++.|+.+++++|. |.+++.++ |++++.++|.+
T Consensus 9 l~Evl~~L~-~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~ 80 (305)
T TIGR00006 9 LDEVVEGLN-IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFAN 80 (305)
T ss_pred HHHHHHhcC-cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 346667665 45567899999999999999999988899999999 87777665 56666666653
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.84 Score=40.22 Aligned_cols=148 Identities=17% Similarity=0.108 Sum_probs=84.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh--hH---hhhCCCceEEec-cCCcCCC----CC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP--YV---IKNAPCVEHVEG-DMFVNVP----SG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp--~~---i~~a~ri~~~~g-d~~~~~p----~~-D 236 (345)
..+++.|+-......+||||..||.++..++++- -.+++.+|.- ++ +..-.|+..++. |+..-.| +. |
T Consensus 68 ~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E~tN~r~l~~~~~~~~~d 146 (245)
T COG1189 68 EKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLERTNVRYLTPEDFTEKPD 146 (245)
T ss_pred HHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEecCChhhCCHHHcccCCC
Confidence 3456666622356789999999999999999874 3468888872 23 222225544443 4433112 12 6
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
++++--.+ -....+|..+...++| ++.++.. +.|.-..+. .....--....+........++.
T Consensus 147 ~~v~DvSF-----ISL~~iLp~l~~l~~~---~~~~v~L---vKPQFEagr------~~v~kkGvv~d~~~~~~v~~~i~ 209 (245)
T COG1189 147 LIVIDVSF-----ISLKLILPALLLLLKD---GGDLVLL---VKPQFEAGR------EQVGKKGVVRDPKLHAEVLSKIE 209 (245)
T ss_pred eEEEEeeh-----hhHHHHHHHHHHhcCC---CceEEEE---ecchhhhhh------hhcCcCceecCcchHHHHHHHHH
Confidence 66554222 2345789999999999 7765554 222211000 00000000011122344567889
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
+++++.||++..+...+
T Consensus 210 ~~~~~~g~~~~gl~~Sp 226 (245)
T COG1189 210 NFAKELGFQVKGLIKSP 226 (245)
T ss_pred HHHhhcCcEEeeeEccC
Confidence 99999999998886554
|
|
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.12 Score=47.92 Aligned_cols=99 Identities=30% Similarity=0.515 Sum_probs=70.4
Q ss_pred CcccCCCchhhhhhcCHHHHHHHHHHHHHhhhh-c---------cccccceeeccCCCchhHHHHHHHcCCCcccCCCcc
Q 044482 1 MRAHNGLHLFDYASKDARLQNLFNQSMHNHTAI-G---------FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLP 70 (345)
Q Consensus 1 ~~~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~-~---------l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~ 70 (345)
+..++|+.+|+|...+++....|+.+|.-..-+ . ++++-.++|+|||-|..+..|...++.+++++||.|
T Consensus 131 ~~~~~G~~l~~~~~~~~~~~~~~~~sm~~l~~~~~~~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp 210 (342)
T KOG3178|consen 131 FATAHGMMLGGYGGADERFSKDFNGSMSFLSTLVMKKILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLP 210 (342)
T ss_pred CccccchhhhhhcccccccHHHHHHHHHHHHHHHHHhhhhhhcccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHH
Confidence 357899999999999998777777777422111 1 223566789999999999999999999999999888
Q ss_pred ccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 71 HVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 71 ~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
..+..-- .+. -|+=...++.|..+|.+..
T Consensus 211 ~v~~~a~-~~~-~gV~~v~gdmfq~~P~~da 239 (342)
T KOG3178|consen 211 FVLAAAP-YLA-PGVEHVAGDMFQDTPKGDA 239 (342)
T ss_pred HHHhhhh-hhc-CCcceecccccccCCCcCe
Confidence 7664322 333 4522333458888888874
|
|
| >PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] | Back alignment and domain information |
|---|
Probab=93.20 E-value=0.47 Score=45.28 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=63.0
Q ss_pred HHHHHHhccCcccccceEEecCCccH----HHHHHHHHC---CCCeEEEeehhh-----Hhhh--------CC----Cce
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGA----NMSLIVNTY---PQITGINFDLPY-----VIKN--------AP----CVE 222 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~----~~~~l~~~~---p~~~~~~~Dlp~-----~i~~--------a~----ri~ 222 (345)
...|++.+. -...-.|+|+|-|.|. +..+|+++. |.+++|+++.|. .++. |+ ..+
T Consensus 99 NqaIleA~~-g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fe 177 (374)
T PF03514_consen 99 NQAILEAFE-GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFE 177 (374)
T ss_pred hHHHHHHhc-cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEE
Confidence 346777776 4455689999999997 555666553 778999999843 2222 21 233
Q ss_pred EEe--ccCCcCC-C------CCCEE--EeccccccCChh------HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 223 HVE--GDMFVNV-P------SGQAI--FTKSVLLNWSDE------QCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 223 ~~~--gd~~~~~-p------~~D~i--~~~~vlh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|.. .+-.+.+ + +++++ -+..-||+..++ ....+|+.++ .|+| . .++++ |.-.+.
T Consensus 178 f~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir-~L~P---~-vvv~~-E~ea~~ 248 (374)
T PF03514_consen 178 FHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR-SLNP---K-VVVLV-EQEADH 248 (374)
T ss_pred EEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH-hcCC---C-EEEEE-eecCCC
Confidence 433 2222221 1 23443 345556888643 2345777665 8899 3 34444 665443
|
Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=93.14 E-value=0.035 Score=42.70 Aligned_cols=86 Identities=20% Similarity=0.313 Sum_probs=43.5
Q ss_pred CEEEecccc----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 236 QAIFTKSVL----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 236 D~i~~~~vl----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
|+|+|-+|. -+|.|+-..++|+++++.|+| ||.+++- + ++..... ....... .+.... ..-...
T Consensus 3 DvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~p---GG~lilE--p----Q~w~sY~-~~~~~~~-~~~~n~-~~i~lr 70 (110)
T PF06859_consen 3 DVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRP---GGILILE--P----QPWKSYK-KAKRLSE-EIRENY-KSIKLR 70 (110)
T ss_dssp EEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE---------HHHHH-TTTTS-H-HHHHHH-HH----
T ss_pred cEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCC---CCEEEEe--C----CCcHHHH-HHhhhhH-HHHhHH-hceEEC
Confidence 677765543 378899999999999999999 8876665 1 1111100 0000011 011111 122234
Q ss_pred HHHHHHHHHH--CCCCceEEEecC
Q 044482 312 AGEFKALAMA--AGFGTIKVICRS 333 (345)
Q Consensus 312 ~~e~~~ll~~--aGf~~~~~~~~~ 333 (345)
.+++.++|.+ .||+..+....+
T Consensus 71 P~~F~~~L~~~evGF~~~e~~~~~ 94 (110)
T PF06859_consen 71 PDQFEDYLLEPEVGFSSVEELGVP 94 (110)
T ss_dssp GGGHHHHHTSTTT---EEEEE---
T ss_pred hHHHHHHHHhcccceEEEEEcccC
Confidence 5678898877 699988765554
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.034 Score=45.36 Aligned_cols=37 Identities=24% Similarity=0.414 Sum_probs=35.4
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+..||+.|++-++-...++.|++.||| ||+|-|.
T Consensus 49 d~iyaeHvlEHlt~~Eg~~alkechr~Lrp---~G~LriA 85 (185)
T COG4627 49 DAIYAEHVLEHLTYDEGTSALKECHRFLRP---GGKLRIA 85 (185)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhCc---CcEEEEE
Confidence 999999999999999999999999999999 9998776
|
|
| >smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.016 Score=40.80 Aligned_cols=53 Identities=8% Similarity=0.040 Sum_probs=41.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFP 97 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~ 97 (345)
|.++|...|+++.|+.+||+++|+ ....+.++|..|...|++...+ +.|.++.
T Consensus 11 IL~~L~~~g~~~~ta~eLa~~lgl-------~~~~v~r~L~~L~~~G~V~~~~~~~~~W~i~~ 66 (68)
T smart00550 11 ILEFLENSGDETSTALQLAKNLGL-------PKKEVNRVLYSLEKKGKVCKQGGTPPLWKLTD 66 (68)
T ss_pred HHHHHHHCCCCCcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCCCceEeec
Confidence 566663333335999999999999 6789999999999999998754 3666654
|
Helix-turn-helix-containing domain. Also known as Zab. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=92.94 E-value=0.41 Score=46.59 Aligned_cols=129 Identities=13% Similarity=0.141 Sum_probs=84.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh----HhhhCC--CceEEeccCCcCC---CCC-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY----VIKNAP--CVEHVEGDMFVNV---PSG-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~----~i~~a~--ri~~~~gd~~~~~---p~~-D~i~~~~vlh 245 (345)
+...+.|+|...|.|.|+.+|.+. | +.++.. |. .+...- .+--+-+|.-+++ |.. |++...+++-
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~yhDWCE~fsTYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGVYHDWCEAFSTYPRTYDLLHADGLFS 438 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchhccchhhccCCCCcchhheehhhhhh
Confidence 556688999999999999999753 3 444443 22 222111 2333345665544 445 9999999997
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+.+. +...||-++-|.|+| +|.++|- |.+ + . ..+.+.+++.-.+
T Consensus 439 ~~~~rC~~~~illEmDRILRP---~G~~iiR-D~~-----------------~------v-------l~~v~~i~~~lrW 484 (506)
T PF03141_consen 439 LYKDRCEMEDILLEMDRILRP---GGWVIIR-DTV-----------------D------V-------LEKVKKIAKSLRW 484 (506)
T ss_pred hhcccccHHHHHHHhHhhcCC---CceEEEe-ccH-----------------H------H-------HHHHHHHHHhCcc
Confidence 77654 456799999999999 9998888 421 0 1 3556777777777
Q ss_pred CceEEEecCC---ceEEEEEEc
Q 044482 325 GTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~~~---~~~vi~~~k 343 (345)
+........+ ...|+.|+|
T Consensus 485 ~~~~~d~e~g~~~~EkiL~~~K 506 (506)
T PF03141_consen 485 EVRIHDTEDGPDGPEKILICQK 506 (506)
T ss_pred eEEEEecCCCCCCCceEEEEEC
Confidence 6544433332 367777775
|
; GO: 0008168 methyltransferase activity |
| >COG1414 IclR Transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.86 E-value=0.014 Score=52.22 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=45.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE--eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV--MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~--~y~~t~~s~~ 101 (345)
|.++| ..++.+.++.|||+++|+ +...+.|+|..|+..|++++++. +|++++-.-.
T Consensus 9 iL~~l-~~~~~~l~l~ela~~~gl-------pksT~~RlL~tL~~~G~v~~d~~~g~Y~Lg~~~~~ 66 (246)
T COG1414 9 ILDLL-AEGPGGLSLAELAERLGL-------PKSTVHRLLQTLVELGYVEQDPEDGRYRLGPRLLE 66 (246)
T ss_pred HHHHH-HhCCCCCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEeehHHHHH
Confidence 66777 333334679999999999 68899999999999999999873 7999876644
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.17 Score=46.61 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=44.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMF 229 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~ 229 (345)
..++++.+. ......+||.=-|.|..+.++++++|+.+++++|. |.+++.++ |+.++.++|-
T Consensus 9 l~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~ 79 (310)
T PF01795_consen 9 LKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFS 79 (310)
T ss_dssp HHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GG
T ss_pred HHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHH
Confidence 356677776 56678999999999999999999999999999999 88886554 5666666653
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.12 Score=43.96 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=58.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC-----C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV-----P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~-----p-~~-D~i~~ 240 (345)
...++||+=||+|.++.+.+.+. -.+++.+|. +..+...+ +++.+.+|++..+ . .. |+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 34789999999999999988775 237888887 55444333 5788899977622 2 23 99988
Q ss_pred ccccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEEeccCC
Q 044482 241 KSVLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~~d~~~ 280 (345)
-=-...... ..++|..+. ..|++ +| ++|+ |.-.
T Consensus 121 DPPY~~~~~--~~~~l~~l~~~~~l~~---~~-~ii~-E~~~ 155 (183)
T PF03602_consen 121 DPPYAKGLY--YEELLELLAENNLLNE---DG-LIII-EHSK 155 (183)
T ss_dssp --STTSCHH--HHHHHHHHHHTTSEEE---EE-EEEE-EEET
T ss_pred CCCcccchH--HHHHHHHHHHCCCCCC---CE-EEEE-EecC
Confidence 644432211 245666665 67888 66 5555 5433
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PRK11569 transcriptional repressor IclR; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.017 Score=52.63 Aligned_cols=55 Identities=7% Similarity=-0.059 Sum_probs=45.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~ 100 (345)
|.+++ .....+.++.|||+++|+ +..-+.|+|..|+..|++++++ .+|++++..-
T Consensus 33 IL~~l-~~~~~~~~lseia~~lgl-------pksTv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 89 (274)
T PRK11569 33 LLEWI-AESNGSVALTELAQQAGL-------PNSTTHRLLTTMQQQGFVRQVGELGHWAIGAHAF 89 (274)
T ss_pred HHHHH-HhCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCeEecCHHHH
Confidence 66777 433457999999999999 6788999999999999998864 4898876654
|
|
| >PRK10163 DNA-binding transcriptional repressor AllR; Provisional | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.018 Score=52.34 Aligned_cols=55 Identities=9% Similarity=-0.068 Sum_probs=44.8
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~ 100 (345)
|.+++ ...+++.++.|||+++|+ +...+.|+|..|+..|++.+++ ..|.+++..-
T Consensus 30 IL~~~-~~~~~~~tl~eIa~~lgl-------pkStv~RlL~tL~~~G~l~~~~~~~~Y~lG~~l~ 86 (271)
T PRK10163 30 ILQYL-EKSGGSSSVSDISLNLDL-------PLSTTFRLLKVLQAADFVYQDSQLGWWHIGLGVF 86 (271)
T ss_pred HHHHH-HhCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCeEEecHHHH
Confidence 67777 333457999999999999 6789999999999999998864 3798876554
|
|
| >smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.015 Score=43.31 Aligned_cols=54 Identities=9% Similarity=0.017 Sum_probs=42.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGA 99 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s 99 (345)
|.+.| ...+.+.|..+||+.++. ....+.|.|+.|...|++.+.. +.|.+++..
T Consensus 10 Il~~l-~~~~~~~t~~~ia~~l~i-------~~~tv~r~l~~L~~~g~l~~~~~~~~y~l~~~~ 65 (91)
T smart00346 10 VLRAL-AEEPGGLTLAELAERLGL-------SKSTAHRLLNTLQELGYVEQDGQNGRYRLGPKV 65 (91)
T ss_pred HHHHH-HhCCCCcCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCeeecCCCCceeecHHH
Confidence 66677 333237999999999999 6789999999999999998753 367776543
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.15 Score=49.59 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=41.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.+....++|+-||+|.++.++++.. .+++++++ |+.++.|+ +++|++|-..+
T Consensus 381 l~~~k~llDv~CGTG~iglala~~~--~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~ 442 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARGV--KRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAED 442 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhccc--cceeeeecChhhcchhhhcchhcCccceeeeecchhh
Confidence 5666889999999999999999875 46788887 77777665 78999994333
|
|
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.07 E-value=0.81 Score=37.22 Aligned_cols=102 Identities=17% Similarity=0.246 Sum_probs=65.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
.+.+++.++ -....+.+|+|.|.|....+.++.. -...+++++ |-.+..++ +..|...|.++ ++.+
T Consensus 61 v~nVLSll~-~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~d 138 (199)
T KOG4058|consen 61 VENVLSLLR-GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLRD 138 (199)
T ss_pred HHHHHHHcc-CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhccccc
Confidence 345566555 3344799999999999988877765 345788888 65555443 67888888888 5554
Q ss_pred C-CEEEe-c-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 235 G-QAIFT-K-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 235 ~-D~i~~-~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
- .++++ . .++. .+--+++.-|+. +.+++-+ -+-+|+
T Consensus 139 y~~vviFgaes~m~--------dLe~KL~~E~p~---nt~vvac-RFPLP~ 177 (199)
T KOG4058|consen 139 YRNVVIFGAESVMP--------DLEDKLRTELPA---NTRVVAC-RFPLPT 177 (199)
T ss_pred cceEEEeehHHHHh--------hhHHHHHhhCcC---CCeEEEE-ecCCCc
Confidence 3 33332 2 2222 233345556777 8888888 665554
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.28 Score=47.54 Aligned_cols=95 Identities=15% Similarity=0.147 Sum_probs=61.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP----- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p----- 233 (345)
.+.+..+ ..+..+|+|+=||.|.++..++++. .+++++++ |+.++.|+ +++|+.+|..+-.+
T Consensus 284 ~a~~~~~-~~~~~~vlDlYCGvG~f~l~lA~~~--~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~ 360 (432)
T COG2265 284 TALEWLE-LAGGERVLDLYCGVGTFGLPLAKRV--KKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEG 360 (432)
T ss_pred HHHHHHh-hcCCCEEEEeccCCChhhhhhcccC--CEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcccc
Confidence 3444444 4556789999999999999999554 47888898 77777766 78999999877221
Q ss_pred CC-CEEEeccccccCChhHHH-HHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG-QAIFTKSVLLNWSDEQCL-KILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~-D~i~~~~vlh~~~d~~~~-~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|++- =|..-+. .+++.+.+ ++| -.-++|.
T Consensus 361 ~~~d~VvvD-----PPR~G~~~~~lk~l~~-~~p---~~IvYVS 395 (432)
T COG2265 361 YKPDVVVVD-----PPRAGADREVLKQLAK-LKP---KRIVYVS 395 (432)
T ss_pred CCCCEEEEC-----CCCCCCCHHHHHHHHh-cCC---CcEEEEe
Confidence 12 776642 2222222 44555544 555 4445555
|
|
| >smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.059 Score=34.57 Aligned_cols=41 Identities=2% Similarity=-0.061 Sum_probs=35.3
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
+.+..+||+.++. ....+.+.|+.|...|+++...+.|..+
T Consensus 8 ~~s~~~la~~l~~-------s~~tv~~~l~~L~~~g~l~~~~~~~~i~ 48 (48)
T smart00419 8 PLTRQEIAELLGL-------TRETVSRTLKRLEKEGLISREGGRIVIL 48 (48)
T ss_pred ccCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEeCCEEEEC
Confidence 5799999999999 5788999999999999998776666543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=91.67 E-value=0.14 Score=48.40 Aligned_cols=58 Identities=17% Similarity=0.263 Sum_probs=41.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDM 228 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~ 228 (345)
...+++.++ ..+. +|||+=||.|.++..+++... +++++|. ++.++.|+ +++|+.++.
T Consensus 186 ~~~~~~~l~-~~~~-~vlDlycG~G~fsl~la~~~~--~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 186 YEQALEWLD-LSKG-DVLDLYCGVGTFSLPLAKKAK--KVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHCT-T-TT-EEEEES-TTTCCHHHHHCCSS--EEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHhh-cCCC-cEEEEeecCCHHHHHHHhhCC--eEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344555555 3333 799999999999999998874 6888888 77777666 688887664
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.64 E-value=0.46 Score=44.42 Aligned_cols=93 Identities=17% Similarity=0.123 Sum_probs=70.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~D~i~~~~v 243 (345)
..+.+|||.=+|.|.++..++++-.- +++.+|+ |..++..+ +++.+.||..+-.+ .+|-|+|.+.
T Consensus 187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~-~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p 265 (341)
T COG2520 187 KEGETVLDMFAGVGPFSIPIAKKGRP-KVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP 265 (341)
T ss_pred cCCCEEEEccCCcccchhhhhhcCCc-eEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence 34789999999999999999987533 3999999 76655433 58899999988333 3599998865
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
- .+.+.+-.+.+.+++ ||.+... +.+..
T Consensus 266 ~------~a~~fl~~A~~~~k~---~g~iHyy-~~~~e 293 (341)
T COG2520 266 K------SAHEFLPLALELLKD---GGIIHYY-EFVPE 293 (341)
T ss_pred C------cchhhHHHHHHHhhc---CcEEEEE-eccch
Confidence 4 224667778888999 8988888 66543
|
|
| >PRK09834 DNA-binding transcriptional activator MhpR; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.032 Score=50.52 Aligned_cols=56 Identities=5% Similarity=-0.012 Sum_probs=45.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.| ...+++.++.|||+++++ +...+.|+|+.|...|+++++. ..|++++....
T Consensus 16 iL~~l-~~~~~~ls~~eia~~lgl-------~kstv~RlL~tL~~~g~v~~~~~~~~Y~Lg~~~~~ 73 (263)
T PRK09834 16 VLRAL-NRLDGGATVGLLAELTGL-------HRTTVRRLLETLQEEGYVRRSASDDSFRLTLKVRQ 73 (263)
T ss_pred HHHHH-HhcCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEecCCCcEEEcHHHHH
Confidence 66666 333346999999999999 6789999999999999998874 48999876644
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.33 E-value=0.52 Score=44.53 Aligned_cols=103 Identities=17% Similarity=0.134 Sum_probs=68.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCC---------------------------------------eEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI---------------------------------------TGIN 208 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~---------------------------------------~~~~ 208 (345)
..++..-. |.....++|==||+|+++++.+...+++ ..++
T Consensus 181 aAil~lag-w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G 259 (381)
T COG0116 181 AAILLLAG-WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYG 259 (381)
T ss_pred HHHHHHcC-CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEE
Confidence 34444334 7777899999999999999988877532 2679
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEecc--ccccCChhHHHH-HH----HHHHhhCCCCC
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKS--VLLNWSDEQCLK-IL----KNCYDALPKSR 267 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~--vlh~~~d~~~~~-iL----~~~~~aL~p~~ 267 (345)
.|+ +.+++.|+ .|+|..+|+.. .-| .. |+|+++- -.. +.++..+. +- +.+++.++-
T Consensus 260 ~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeR-lg~~~~v~~LY~~fg~~lk~~~~~-- 336 (381)
T COG0116 260 SDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGER-LGSEALVAKLYREFGRTLKRLLAG-- 336 (381)
T ss_pred ecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchh-cCChhhHHHHHHHHHHHHHHHhcC--
Confidence 999 88888776 59999999886 333 33 8888862 222 22332222 33 444455555
Q ss_pred CCcEEEEE
Q 044482 268 KHGRTQLR 275 (345)
Q Consensus 268 ~gG~lli~ 275 (345)
.++.++.
T Consensus 337 -ws~~v~t 343 (381)
T COG0116 337 -WSRYVFT 343 (381)
T ss_pred -CceEEEE
Confidence 5666666
|
|
| >PRK15090 DNA-binding transcriptional regulator KdgR; Provisional | Back alignment and domain information |
|---|
Probab=91.30 E-value=0.035 Score=50.01 Aligned_cols=55 Identities=5% Similarity=-0.067 Sum_probs=44.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.+ ... ++.|+.|||+++|+ +...+.|+|+.|+..|++++++ ++|.+++..-.
T Consensus 19 IL~~l-~~~-~~l~l~eia~~lgl-------~kstv~Rll~tL~~~G~l~~~~~~~~Y~lG~~~~~ 75 (257)
T PRK15090 19 ILQAL-GEE-REIGITELSQRVMM-------SKSTVYRFLQTMKTLGYVAQEGESEKYSLTLKLFE 75 (257)
T ss_pred HHHHh-hcC-CCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEEecHHHHH
Confidence 66666 333 36899999999999 6789999999999999998864 48999876644
|
|
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=91.02 E-value=0.89 Score=39.79 Aligned_cols=100 Identities=16% Similarity=0.194 Sum_probs=67.2
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHH-CCCC--------eEEEeehhhHhhhCCCceEEeccCCcC---------C
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQI--------TGINFDLPYVIKNAPCVEHVEGDMFVN---------V 232 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~--------~~~~~Dlp~~i~~a~ri~~~~gd~~~~---------~ 232 (345)
-+.|.-|.+..++||+....|.++.-+.++ |..+ +++.+|+..|...- .+.-+++|+.++ +
T Consensus 33 deef~i~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI~-GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 33 DEEFQIFEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPIE-GVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhhhHHhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCccC-ceEEeecccCCHhHHHHHHHHh
Confidence 344544667889999999999999998876 3211 28999997764432 566677777651 2
Q ss_pred C--CCCEEEec-----cccccCChhHHHH----HHHHHHhhCCCCCCCcEEEE
Q 044482 233 P--SGQAIFTK-----SVLLNWSDEQCLK----ILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 233 p--~~D~i~~~-----~vlh~~~d~~~~~----iL~~~~~aL~p~~~gG~lli 274 (345)
. ++|+|++- .-+|+++.-.-.+ .|.-...+|+| ||.++-
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~---Gg~FVa 161 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKP---GGSFVA 161 (294)
T ss_pred CCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecC---CCeeeh
Confidence 2 23999985 4578876543233 34445678999 998753
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=90.99 E-value=3.2 Score=34.69 Aligned_cols=117 Identities=13% Similarity=0.116 Sum_probs=70.7
Q ss_pred ecCCccHHHHHHHHHCC---CCeEEEeehhh-HhhhCC------------CceEEe-ccCCc--C-C--CCC--CEEEec
Q 044482 186 VASCLGANMSLIVNTYP---QITGINFDLPY-VIKNAP------------CVEHVE-GDMFV--N-V--PSG--QAIFTK 241 (345)
Q Consensus 186 iGgG~G~~~~~l~~~~p---~~~~~~~Dlp~-~i~~a~------------ri~~~~-gd~~~--~-~--p~~--D~i~~~ 241 (345)
||=|.-.++.+|+++++ ++..+.+|-.+ +.+.-+ ++++.- .|..+ . . ... |.|+++
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiFN 82 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIFN 82 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEEe
Confidence 67788889999999987 45567888733 333222 344333 35554 1 2 122 888876
Q ss_pred cccccC-----------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 242 SVLLNW-----------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 242 ~vlh~~-----------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
.----. ..+-...+|+.+.+.|++ +|.|.|. +. .+..+
T Consensus 83 FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~---~G~IhVT----l~------------------------~~~py 131 (166)
T PF10354_consen 83 FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKP---DGEIHVT----LK------------------------DGQPY 131 (166)
T ss_pred CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE----eC------------------------CCCCC
Confidence 443220 011234678889999999 9999998 11 11112
Q ss_pred CHHHHHHHHHHCCCCceEEEecC
Q 044482 311 TAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
+.=+++++.+++||..++..+..
T Consensus 132 ~~W~i~~lA~~~gl~l~~~~~F~ 154 (166)
T PF10354_consen 132 DSWNIEELAAEAGLVLVRKVPFD 154 (166)
T ss_pred ccccHHHHHHhcCCEEEEEecCC
Confidence 22234678888999888876654
|
|
| >PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.064 Score=39.29 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=38.4
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..+++++..|...|+++... +.|.++.-.+.
T Consensus 24 ~~~s~~eiA~~~~i-------~~~~l~kil~~L~~~Gli~s~~G~~GGy~L~~~~~~ 73 (83)
T PF02082_consen 24 KPVSSKEIAERLGI-------SPSYLRKILQKLKKAGLIESSRGRGGGYRLARPPEE 73 (83)
T ss_dssp C-BEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEETSTTSEEEESS-CCG
T ss_pred CCCCHHHHHHHHCc-------CHHHHHHHHHHHhhCCeeEecCCCCCceeecCCHHH
Confidence 35899999999999 7999999999999999997763 38888876654
|
(strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C. |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.4 Score=39.60 Aligned_cols=94 Identities=17% Similarity=0.098 Sum_probs=67.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C---ceEEec-cCCc-CCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C---VEHVEG-DMFV-NVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r---i~~~~g-d~~~-~~p~~--D~i~~~~ 242 (345)
...+..|+|==||||.+++...-- ++++++.|+ ..|++.++ + ..+..+ |+.. |+++. |.|.+--
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIatDP 272 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIATDP 272 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEecC
Confidence 445678999999999999886543 688999999 67888777 2 334444 8877 77753 7776521
Q ss_pred c------cccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 V------LLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 v------lh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- ..--. ++--.++|..+.+.|++ ||++++.
T Consensus 273 PYGrst~~~~~~l~~Ly~~~le~~~evLk~---gG~~vf~ 309 (347)
T COG1041 273 PYGRSTKIKGEGLDELYEEALESASEVLKP---GGRIVFA 309 (347)
T ss_pred CCCcccccccccHHHHHHHHHHHHHHHhhc---CcEEEEe
Confidence 1 11111 34457899999999999 9988887
|
|
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=90.76 E-value=1.7 Score=37.55 Aligned_cols=96 Identities=11% Similarity=0.104 Sum_probs=51.7
Q ss_pred ccceEEecCCccH---HHHHHHHHC-CCCeEEEeeh--hh----HhhhC---CCceEEeccCCcC---CC-----C-C-C
Q 044482 180 LKKLVDVASCLGA---NMSLIVNTY-PQITGINFDL--PY----VIKNA---PCVEHVEGDMFVN---VP-----S-G-Q 236 (345)
Q Consensus 180 ~~~vlDiGgG~G~---~~~~l~~~~-p~~~~~~~Dl--p~----~i~~a---~ri~~~~gd~~~~---~p-----~-~-D 236 (345)
+.+|+++|--.|. +...+++.. ++.+++++|+ +. .++.- .||++++||-.++ .+ . . -
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 4799999955555 444555665 7889999998 21 23321 2999999998652 11 1 1 2
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
++++-..=|.+ +.+.+.|+.....+++ |+.++|- |....
T Consensus 113 vlVilDs~H~~--~hvl~eL~~y~plv~~---G~Y~IVe-Dt~~~ 151 (206)
T PF04989_consen 113 VLVILDSSHTH--EHVLAELEAYAPLVSP---GSYLIVE-DTIIE 151 (206)
T ss_dssp EEEEESS------SSHHHHHHHHHHT--T---T-EEEET-SHHHH
T ss_pred eEEEECCCccH--HHHHHHHHHhCccCCC---CCEEEEE-ecccc
Confidence 33333333332 3457889999999999 8888887 66543
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A | Back alignment and domain information |
|---|
Probab=90.26 E-value=0.061 Score=37.48 Aligned_cols=44 Identities=9% Similarity=0.052 Sum_probs=34.2
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCC
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPG 98 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~ 98 (345)
.+.+..+||+.++. +...+.+.++.|...|++++..+ .|++||.
T Consensus 17 ~~~t~~~l~~~~~~-------~~~~vs~~i~~L~~~glv~~~~~~~d~R~~~~~LT~~ 67 (68)
T PF13463_consen 17 GPMTQSDLAERLGI-------SKSTVSRIIKKLEEKGLVEKERDPHDKRSKRYRLTPA 67 (68)
T ss_dssp S-BEHHHHHHHTT---------HHHHHHHHHHHHHTTSEEEEEESSCTTSEEEEE-HH
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCcCCeeEEEeCCC
Confidence 36899999999999 67888999999999999977643 6777764
|
|
| >cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.097 Score=36.23 Aligned_cols=42 Identities=7% Similarity=0.028 Sum_probs=37.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCC
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFP 97 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~ 97 (345)
+.|..+||+.+++ .+..+.+.++.|...|++.... +.|.++|
T Consensus 25 ~~s~~ela~~~g~-------s~~tv~r~l~~L~~~g~i~~~~~~~~~l~~ 67 (67)
T cd00092 25 PLTRQEIADYLGL-------TRETVSRTLKELEEEGLISRRGRGKYRVNP 67 (67)
T ss_pred CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEecCCCeEEeCC
Confidence 5899999999999 6788999999999999998877 6787764
|
|
| >PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis | Back alignment and domain information |
|---|
Probab=89.58 E-value=0.085 Score=36.96 Aligned_cols=36 Identities=8% Similarity=-0.043 Sum_probs=33.1
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
+.|+.+||+.+++ ....+.+.|+.|...|++++..+
T Consensus 22 ~~t~~eIa~~l~i-------~~~~v~~~L~~L~~~GlV~~~~~ 57 (68)
T PF01978_consen 22 PATAEEIAEELGI-------SRSTVYRALKSLEEKGLVEREEG 57 (68)
T ss_dssp HEEHHHHHHHHTS-------SHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEcC
Confidence 6899999999999 68899999999999999988765
|
TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=89.27 E-value=0.83 Score=47.08 Aligned_cols=31 Identities=16% Similarity=0.266 Sum_probs=24.3
Q ss_pred cceEEecCCccHHHHHHHHHC-------C-----CCeEEEeeh
Q 044482 181 KKLVDVASCLGANMSLIVNTY-------P-----QITGINFDL 211 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~-------p-----~~~~~~~Dl 211 (345)
-+|+|+|=|+|.......+.+ | .++++.++.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 589999999999877777544 4 467888885
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=89.19 E-value=0.5 Score=43.21 Aligned_cols=93 Identities=15% Similarity=0.155 Sum_probs=65.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC----CC--CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP----SG--QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p----~~--D~i~~ 240 (345)
...+|||+=|=+|.++...+. ..-.+++.+|. ...++.++ +++++.+|+|+.+. .+ |+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 457999999999999998664 33447999999 66666554 78999999997332 22 99987
Q ss_pred c---cccccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 K---SVLLNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~---~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
- ..=..+. ...-.++++++.+.|+| ||.|+.+
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~---gG~l~~~ 237 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKP---GGLLLTC 237 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 2 1111122 12346799999999999 9988777
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.86 E-value=0.8 Score=41.61 Aligned_cols=95 Identities=18% Similarity=0.158 Sum_probs=64.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCCC--C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPSG--Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~~--D 236 (345)
..+..+++=||||.|.+.+...++ +.+ .+..+|. ..+++..+ ++....||-+. ..+.+ |
T Consensus 119 ~~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~d 197 (337)
T KOG1562|consen 119 HPNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFD 197 (337)
T ss_pred CCCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCce
Confidence 456789999999999999998877 665 4677777 55555443 89999998776 33333 8
Q ss_pred EEEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+.-.-=-.-+-.. -...+.-+.++||+ +|.+++.
T Consensus 198 Vii~dssdpvgpa~~lf~~~~~~~v~~aLk~---dgv~~~q 235 (337)
T KOG1562|consen 198 VIITDSSDPVGPACALFQKPYFGLVLDALKG---DGVVCTQ 235 (337)
T ss_pred EEEEecCCccchHHHHHHHHHHHHHHHhhCC---CcEEEEe
Confidence 887642210001000 12456668899999 9988877
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=88.81 E-value=0.97 Score=41.27 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=51.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC--------CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP--------CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~--------ri~~~~gd~~~ 230 (345)
..++++.+. ......+||.==|.|..+.++++++|... .+++|. |..++.|+ |+.++.++|-+
T Consensus 12 l~E~i~~L~-~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 12 LNEVVELLA-PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHhcc-cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 346667776 56668999999999999999999999765 999999 88888877 67777776643
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.6 Score=42.37 Aligned_cols=97 Identities=14% Similarity=0.143 Sum_probs=70.1
Q ss_pred ceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccccCC
Q 044482 182 KLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWS 248 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 248 (345)
+++-+|||.-.+...+-+. |. .++.+|. +.+++... -+.+...|+.. .+++. |+++.+..++++-
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~--dI~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~ 128 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFE--DITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALF 128 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCC--CceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEecCcccccc
Confidence 8999999999888776654 33 4677777 33344332 47888899988 77743 9999999998754
Q ss_pred hh--------HHHHHHHHHHhhCCCCCCCcEEEEEeccC--CCCCC
Q 044482 249 DE--------QCLKILKNCYDALPKSRKHGRTQLRSKRG--LPESP 284 (345)
Q Consensus 249 d~--------~~~~iL~~~~~aL~p~~~gG~lli~~d~~--~~~~~ 284 (345)
.+ .+...+.++.+.|+| ||+.+.+ ... .+..+
T Consensus 129 ~de~a~~~~~~v~~~~~eVsrvl~~---~gk~~sv-tl~~~vp~~r 170 (482)
T KOG2352|consen 129 EDEDALLNTAHVSNMLDEVSRVLAP---GGKYISV-TLVQVVPQGR 170 (482)
T ss_pred CCchhhhhhHHhhHHHhhHHHHhcc---CCEEEEE-EeeeeccCCC
Confidence 33 233468899999999 9998888 663 44443
|
|
| >PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif | Back alignment and domain information |
|---|
Probab=88.01 E-value=0.068 Score=37.67 Aligned_cols=45 Identities=9% Similarity=0.202 Sum_probs=35.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV 91 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~ 91 (345)
|.++| ...| .+|..+||.++++ +|+.++.+|..|+..|.+++...
T Consensus 5 i~~~l-~~~~-~~S~~eLa~~~~~-------s~~~ve~mL~~l~~kG~I~~~~~ 49 (69)
T PF09012_consen 5 IRDYL-RERG-RVSLAELAREFGI-------SPEAVEAMLEQLIRKGYIRKVDM 49 (69)
T ss_dssp HHHHH-HHS--SEEHHHHHHHTT---------HHHHHHHHHHHHCCTSCEEEEE
T ss_pred HHHHH-HHcC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEEecC
Confidence 45666 3333 5899999999999 79999999999999999987653
|
FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A. |
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=87.19 E-value=2.9 Score=35.62 Aligned_cols=93 Identities=11% Similarity=-0.005 Sum_probs=59.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-C--CCEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-S--GQAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-~--~D~i~~~ 241 (345)
...++||+=+|+|.++.+.+.+.- .+++.+|. ...+...+ +++++..|...- .+ . -|+|++-
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 457999999999999999998863 46788887 33322221 678888888752 22 2 3999987
Q ss_pred cccc-cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLL-NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh-~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
=-.+ ..-+.+...++-.-...|+| +|.+++-
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~---~~~iv~E 153 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKP---GALIVVE 153 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCC---CcEEEEE
Confidence 6655 22222222223234567999 7755554
|
|
| >TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR | Back alignment and domain information |
|---|
Probab=86.28 E-value=0.29 Score=39.48 Aligned_cols=48 Identities=13% Similarity=-0.060 Sum_probs=39.3
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+++.|.++||+++++ ++..++++|+.|...|++.... +.|.++.-.+.
T Consensus 23 ~~~~s~~~ia~~~~i-------p~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~~~~~ 73 (135)
T TIGR02010 23 TGPVTLADISERQGI-------SLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGRPAED 73 (135)
T ss_pred CCcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEeCCCCCEeccCCHHH
Confidence 347899999999999 7899999999999999996542 27887665543
|
This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system. |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=86.05 E-value=1.7 Score=38.86 Aligned_cols=93 Identities=18% Similarity=0.194 Sum_probs=51.8
Q ss_pred cceEEecCCccHHHHH---HHHHC--CCCeEEEeeh----hhHhhh------------CC--------------------
Q 044482 181 KKLVDVASCLGANMSL---IVNTY--PQITGINFDL----PYVIKN------------AP-------------------- 219 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~---l~~~~--p~~~~~~~Dl----p~~i~~------------a~-------------------- 219 (345)
..|++.||-.|..+.. +++.+ ++-++.++|. |+.-.. ..
T Consensus 76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl~ 155 (248)
T PF05711_consen 76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGLL 155 (248)
T ss_dssp SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTTS
T ss_pred eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCCC
Confidence 7899999988876654 44444 4557899996 332110 00
Q ss_pred --CceEEeccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 220 --CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 220 --ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
++++++|.|.+.+|.. +-|-+-++=-+|=++ ....|..++..|.| ||.|++- |.
T Consensus 156 ~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlYes-T~~aLe~lyprl~~---GGiIi~D-DY 213 (248)
T PF05711_consen 156 DDNVRFVKGWFPDTLPDAPIERIALLHLDCDLYES-TKDALEFLYPRLSP---GGIIIFD-DY 213 (248)
T ss_dssp STTEEEEES-HHHHCCC-TT--EEEEEE---SHHH-HHHHHHHHGGGEEE---EEEEEES-ST
T ss_pred cccEEEECCcchhhhccCCCccEEEEEEeccchHH-HHHHHHHHHhhcCC---CeEEEEe-CC
Confidence 6889999998777742 323222222233233 36789999999999 7755555 54
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B | Back alignment and domain information |
|---|
Probab=86.01 E-value=0.075 Score=36.28 Aligned_cols=35 Identities=3% Similarity=0.001 Sum_probs=31.2
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.|..+||+.++. .+..+.++++.|...|++++..
T Consensus 21 ~~t~~~la~~l~~-------~~~~vs~~v~~L~~~Glv~r~~ 55 (62)
T PF12802_consen 21 ELTQSELAERLGI-------SKSTVSRIVKRLEKKGLVERER 55 (62)
T ss_dssp GEEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE
T ss_pred CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeC
Confidence 3899999999999 7889999999999999998764
|
... |
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=85.49 E-value=10 Score=35.97 Aligned_cols=104 Identities=18% Similarity=0.182 Sum_probs=68.0
Q ss_pred HhccCcccccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhh----hCC-----CceEEeccCCc---CCCC--
Q 044482 172 EIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIK----NAP-----CVEHVEGDMFV---NVPS-- 234 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~----~a~-----ri~~~~gd~~~---~~p~-- 234 (345)
..++ -....+|||...+.|.=+..+++.-++ ..++.+|. +.-+. ..+ ++..+..|... ..+.
T Consensus 150 ~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~ 228 (355)
T COG0144 150 LVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGE 228 (355)
T ss_pred HHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccC
Confidence 3444 456689999999999999999998765 55689998 33222 222 45566666542 2221
Q ss_pred -CCEEEec------cc-------cccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 235 -GQAIFTK------SV-------LLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 235 -~D~i~~~------~v-------lh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.|.|++- .+ ...|+.++. .+||..+.+.||| ||.|+-. ...+
T Consensus 229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~---GG~LVYS-TCS~ 291 (355)
T COG0144 229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKP---GGVLVYS-TCSL 291 (355)
T ss_pred cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ccCC
Confidence 2666552 22 244444422 4799999999999 9988777 4443
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=84.28 E-value=3.5 Score=32.68 Aligned_cols=84 Identities=21% Similarity=0.165 Sum_probs=51.9
Q ss_pred CceEEeccCCcCCC---C-CCEEEecccc-----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh
Q 044482 220 CVEHVEGDMFVNVP---S-GQAIFTKSVL-----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN 290 (345)
Q Consensus 220 ri~~~~gd~~~~~p---~-~D~i~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~ 290 (345)
++++.-||+.+-++ . .|++++-..- ..|+. .+|+++++.++| ||.+... .
T Consensus 32 ~L~L~~gDa~~~l~~l~~~~Da~ylDgFsP~~nPelWs~----e~~~~l~~~~~~---~~~l~Ty-------s------- 90 (124)
T PF05430_consen 32 TLTLWFGDAREMLPQLDARFDAWYLDGFSPAKNPELWSE----ELFKKLARLSKP---GGTLATY-------S------- 90 (124)
T ss_dssp EEEEEES-HHHHHHHB-T-EEEEEE-SS-TTTSGGGSSH----HHHHHHHHHEEE---EEEEEES---------------
T ss_pred EEEEEEcHHHHHHHhCcccCCEEEecCCCCcCCcccCCH----HHHHHHHHHhCC---CcEEEEe-------e-------
Confidence 45566666654222 1 2666654322 24555 479999999999 7755444 0
Q ss_pred hhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 291 RNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 291 ~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
. ...+++-|.++||++.+....+.-...+.+.||
T Consensus 91 -------------~-------a~~Vr~~L~~aGF~v~~~~g~g~Kr~~~~a~~~ 124 (124)
T PF05430_consen 91 -------------S-------AGAVRRALQQAGFEVEKVPGFGRKREMLRAVKP 124 (124)
T ss_dssp ---------------------BHHHHHHHHHCTEEEEEEE-STTSSEEEEEEC-
T ss_pred -------------c-------hHHHHHHHHHcCCEEEEcCCCCCcchheEEEcC
Confidence 0 233689999999998877766666788888875
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.26 E-value=4.1 Score=36.37 Aligned_cols=93 Identities=20% Similarity=0.128 Sum_probs=56.1
Q ss_pred cc-cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---------------CceEEeccCCc------CCCC
Q 044482 177 FK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---------------CVEHVEGDMFV------NVPS 234 (345)
Q Consensus 177 ~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------------ri~~~~gd~~~------~~p~ 234 (345)
|. ....||.+|+|+|..++.. .......++.-|.|.+++..+ .+....-+.-. -.|.
T Consensus 83 ~~~~~~~vlELGsGtglvG~~a-a~~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~ 161 (248)
T KOG2793|consen 83 FKTKYINVLELGSGTGLVGILA-ALLLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPN 161 (248)
T ss_pred ccccceeEEEecCCccHHHHHH-HHHhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCC
Confidence 44 4568999999999555444 445577899999877655433 12222212111 1223
Q ss_pred -CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|+|+.+.++++-. ...-+..-++.-|.. ++.+++.
T Consensus 162 ~~DlilasDvvy~~~--~~e~Lv~tla~ll~~---~~~i~l~ 198 (248)
T KOG2793|consen 162 PFDLILASDVVYEEE--SFEGLVKTLAFLLAK---DGTIFLA 198 (248)
T ss_pred cccEEEEeeeeecCC--cchhHHHHHHHHHhc---CCeEEEE
Confidence 48888888885433 233556666667777 7755555
|
|
| >PRK10857 DNA-binding transcriptional regulator IscR; Provisional | Back alignment and domain information |
|---|
Probab=84.20 E-value=0.3 Score=40.85 Aligned_cols=48 Identities=15% Similarity=-0.074 Sum_probs=39.6
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+++.|+++||+++++ .+..+.++|..|...|++.... +.|.+..-.+.
T Consensus 23 ~~~vs~~eIA~~~~i-------p~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~p~~ 73 (164)
T PRK10857 23 AGPVPLADISERQGI-------SLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKDASS 73 (164)
T ss_pred CCcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCCHHH
Confidence 357999999999999 6899999999999999997642 37887655443
|
|
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=84.09 E-value=1.6 Score=41.67 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=49.7
Q ss_pred CceEEeccCCc---CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 220 CVEHVEGDMFV---NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 220 ri~~~~gd~~~---~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
|++++.+++.+ ..|++ |.+++..+.-.+++++..++++++.++++| ||+++.- ....+
T Consensus 276 rv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~p---gaRV~~R-sa~~~ 338 (380)
T PF11899_consen 276 RVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARP---GARVLWR-SAAVP 338 (380)
T ss_pred eEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCC---CCEEEEe-eCCCC
Confidence 89999998877 35544 999999999888999999999999999999 9999998 55433
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator) | Back alignment and domain information |
|---|
Probab=83.71 E-value=0.33 Score=38.76 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=38.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ ++..+.++|+.|...|++.... +.|.++.-.+.
T Consensus 24 ~~~s~~eia~~~~i-------~~~~v~~il~~L~~~gli~~~~g~~ggy~l~~~~~~ 73 (132)
T TIGR00738 24 GPVSVKEIAERQGI-------SRSYLEKILRTLRRAGLVESVRGPGGGYRLARPPEE 73 (132)
T ss_pred CcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEeccCCCCCccCCCCHHH
Confidence 47899999999999 7899999999999999997642 26777655543
|
This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. |
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.30 E-value=2.6 Score=37.55 Aligned_cols=43 Identities=16% Similarity=0.186 Sum_probs=33.4
Q ss_pred HHHHhccCccccc--ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH
Q 044482 169 KILEIYKGFKELK--KLVDVASCLGANMSLIVNTYPQITGINFDL-PYV 214 (345)
Q Consensus 169 ~i~~~~~~~~~~~--~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~ 214 (345)
.+++... .+... +|||.=+|.|..+..++.+ +++++.+|. |.+
T Consensus 77 ~l~kAvg-lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~v 122 (250)
T PRK10742 77 AVAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVV 122 (250)
T ss_pred HHHHHhC-CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHH
Confidence 4556555 55544 8999999999999999988 667999998 443
|
|
| >COG1959 Predicted transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=82.69 E-value=0.43 Score=39.27 Aligned_cols=46 Identities=17% Similarity=0.063 Sum_probs=39.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
+.|.++||++.++ .|..|++++..|...|+++-.. +.|.+..-.+.
T Consensus 25 ~~s~~~IA~~~~i-------s~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar~~~~ 73 (150)
T COG1959 25 PVSSAEIAERQGI-------SPSYLEKILSKLRKAGLVKSVRGKGGGYRLARPPEE 73 (150)
T ss_pred cccHHHHHHHhCc-------CHHHHHHHHHHHHHcCCEEeecCCCCCccCCCChHH
Confidence 6899999999999 7999999999999999996543 38998876654
|
|
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.87 E-value=2.3 Score=40.10 Aligned_cols=45 Identities=13% Similarity=0.212 Sum_probs=35.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV 214 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~ 214 (345)
.++..+..|.+...++|||.|.|++++-+.-.| ++++..+|-.+.
T Consensus 143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~ 187 (476)
T KOG2651|consen 143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQR 187 (476)
T ss_pred HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchH
Confidence 344444447778899999999999999988777 788999997543
|
|
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.81 E-value=3.1 Score=39.06 Aligned_cols=63 Identities=21% Similarity=0.293 Sum_probs=41.4
Q ss_pred cCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH----CC----CCeEEEeeh-hhH
Q 044482 147 MLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT----YP----QITGINFDL-PYV 214 (345)
Q Consensus 147 ~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~----~p----~~~~~~~Dl-p~~ 214 (345)
+-|++.+.|.+..+.+-. + ..+.+. -+..-.+|++|.|+|.++..+++. +| .+++.+++. |+.
T Consensus 50 TApels~lFGella~~~~---~-~wq~~g-~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L 121 (370)
T COG1565 50 TAPELSQLFGELLAEQFL---Q-LWQELG-RPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPEL 121 (370)
T ss_pred echhHHHHHHHHHHHHHH---H-HHHHhc-CCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHH
Confidence 358888888887654321 1 122222 233467999999999999888764 45 467888887 443
|
|
| >PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B | Back alignment and domain information |
|---|
Probab=81.49 E-value=0.2 Score=34.25 Aligned_cols=54 Identities=4% Similarity=0.001 Sum_probs=41.8
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
.++..-..+. |.+.| ..+ .+.|+.+||+.++. .+..+.+=|+.|...|+++...
T Consensus 5 ~aL~~p~R~~-Il~~L-~~~-~~~t~~ela~~l~~-------~~~t~s~hL~~L~~aGli~~~~ 58 (61)
T PF12840_consen 5 KALSDPTRLR-ILRLL-ASN-GPMTVSELAEELGI-------SQSTVSYHLKKLEEAGLIEVER 58 (61)
T ss_dssp HHHTSHHHHH-HHHHH-HHC-STBEHHHHHHHHTS--------HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHhCCHHHHH-HHHHH-hcC-CCCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEEec
Confidence 3445556677 88888 332 37999999999999 6778889999999999997654
|
... |
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.66 E-value=11 Score=35.29 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=58.6
Q ss_pred cccccceEEec-CCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEec---cCCcCCCC-CCEEEeccccccC
Q 044482 177 FKELKKLVDVA-SCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEG---DMFVNVPS-GQAIFTKSVLLNW 247 (345)
Q Consensus 177 ~~~~~~vlDiG-gG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~g---d~~~~~p~-~D~i~~~~vlh~~ 247 (345)
....++|+=+| ||.|+++.+++++.- .+++.+|. ++-.+.|+ .-.++.. |..+..++ .|+++-.-.
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~---- 238 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG---- 238 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC----
Confidence 33456766666 378889999999875 99999999 66666666 2333443 22223332 377665433
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..-+....+.|++ ||+++++ -..
T Consensus 239 -----~~~~~~~l~~l~~---~G~~v~v-G~~ 261 (339)
T COG1064 239 -----PATLEPSLKALRR---GGTLVLV-GLP 261 (339)
T ss_pred -----hhhHHHHHHHHhc---CCEEEEE-CCC
Confidence 1236667789999 9999999 554
|
|
| >PF07381 DUF1495: Winged helix DNA-binding domain (DUF1495); InterPro: IPR010863 This family consists of several hypothetical archaeal proteins of around 110 residues in length | Back alignment and domain information |
|---|
Probab=80.51 E-value=0.52 Score=35.03 Aligned_cols=62 Identities=15% Similarity=-0.033 Sum_probs=43.3
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCC----------CCccCcee-eEEeE----eeecC
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASS----------SPVSRNIS-TIDVV----MYNLF 96 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~----------~L~~~gl~-~~~~~----~y~~t 96 (345)
-++.+ |+..|....+.+.++.|||+.++. ++..+.-.|+ .|+.+|++ .+... .|++|
T Consensus 9 ~~R~~-vl~~L~~~yp~~~~~~eIar~v~~-------~~snV~GaL~G~g~rY~~e~SLv~lGLV~~~~~~~g~k~Y~lT 80 (90)
T PF07381_consen 9 KVRKK-VLEYLCSIYPEPAYPSEIARSVGS-------DYSNVLGALRGDGKRYNKEDSLVGLGLVEEEEEKGGFKYYRLT 80 (90)
T ss_pred HHHHH-HHHHHHHcCCCcCCHHHHHHHHCC-------CHHHHHHHHhcCCCCcCcchhHHHcCCeeEeeecCCeeEEEeC
Confidence 34455 666663333567899999999999 5666655544 58999999 44332 89999
Q ss_pred CCccc
Q 044482 97 PGAKE 101 (345)
Q Consensus 97 ~~s~~ 101 (345)
+.+..
T Consensus 81 ~~G~~ 85 (90)
T PF07381_consen 81 EKGKR 85 (90)
T ss_pred hhhhh
Confidence 87764
|
The function of this family is unknown, although one sequence (Q8U3W1 from SWISSPROT) is described as a putative HTH transcription regulator. |
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=80.36 E-value=5.6 Score=36.34 Aligned_cols=96 Identities=17% Similarity=0.162 Sum_probs=64.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CC-C-CCEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VP-S-GQAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p-~-~D~i~~ 240 (345)
-....+|||+.++.|.-+..+++..+ ...++..|. +.-+...+ ++.....|.... .+ . .|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 34557899999999999999999887 568899998 43333222 566666676552 11 2 277765
Q ss_pred c------cccccCC-------hhH-------HHHHHHHHHhhC----CCCCCCcEEEEE
Q 044482 241 K------SVLLNWS-------DEQ-------CLKILKNCYDAL----PKSRKHGRTQLR 275 (345)
Q Consensus 241 ~------~vlh~~~-------d~~-------~~~iL~~~~~aL----~p~~~gG~lli~ 275 (345)
- .++..-+ .++ -.++|+++.+.+ +| ||+++-.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~---gG~lvYs 218 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKP---GGRLVYS 218 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEE---EEEEEEE
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccC---CCeEEEE
Confidence 2 2222211 111 147999999999 99 9987766
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 345 | ||||
| 1kyw_A | 365 | Crystal Structure Analysis Of Caffeic Acid5-Hydroxy | 1e-45 | ||
| 3reo_A | 368 | Monolignol O-Methyltransferase (Momt) Length = 368 | 9e-44 | ||
| 3p9c_A | 364 | Crystal Structure Of Perennial Ryegrass Lpomt1 Boun | 2e-41 | ||
| 1fp1_D | 372 | Crystal Structure Analysis Of Chalcone O-Methyltran | 1e-37 | ||
| 1fpq_A | 372 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-33 | ||
| 1fp2_A | 352 | Crystal Structure Analysis Of Isoflavone O-Methyltr | 6e-18 | ||
| 2qyo_A | 357 | Crystal Structure Of Isoflavone O-Methyltransferase | 3e-17 | ||
| 1zg3_A | 358 | Crystal Structure Of The Isoflavanone 4'-O-Methyltr | 3e-17 | ||
| 1zgj_A | 354 | Crystal Structure Of Isoflavanone 4'-O-Methyltransf | 3e-17 | ||
| 1zga_A | 357 | Crystal Structure Of Isoflavanone 4'-o-methyltransf | 3e-17 | ||
| 1fpx_A | 352 | Crystal Structure Analysis Of Selenomethionine Subs | 2e-15 | ||
| 3lst_A | 348 | Crystal Structure Of Calo1, Methyltransferase In Ca | 5e-07 | ||
| 1tw2_A | 360 | Crystal Structure Of Carminomycin-4-O-Methyltransfe | 2e-05 | ||
| 1qzz_A | 374 | Crystal Structure Of Aclacinomycin-10-Hydroxylase ( | 4e-04 |
| >pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic Acid 35-O-Methyltransferase In Complex With 5- Hydroxyconiferaldehyde Length = 365 | Back alignment and structure |
|
| >pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt) Length = 368 | Back alignment and structure |
|
| >pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To Sah Length = 364 | Back alignment and structure |
|
| >pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Chalcone O- Methyltransferase Length = 372 | Back alignment and structure |
|
| >pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase Homolog In Complex With Biochanin A And Sah Length = 357 | Back alignment and structure |
|
| >pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone 4'-O-Methyltransferase Complexed With Sah And 2,7,4'-Trihydroxyisoflavanone Length = 358 | Back alignment and structure |
|
| >pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase Complexed With (+)-Pisatin Length = 354 | Back alignment and structure |
|
| >pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase Complexed With (+)-6a-hydroxymaackiain Length = 357 | Back alignment and structure |
|
| >pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted Isoflavone O-Methyltransferase Length = 352 | Back alignment and structure |
|
| >pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In Calicheamicin Biosynthesis, Sah Bound Form Length = 348 | Back alignment and structure |
|
| >pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase (Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah) And 4-Methoxy-E-Rhodomycin T (M-Et) Length = 360 | Back alignment and structure |
|
| >pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb) In Complex With S-Adensyl-L-Methionine (Sam) Length = 374 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 205 bits (523), Expect = 1e-63
Identities = 87/203 (42%), Positives = 118/203 (58%), Gaps = 7/203 (3%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y P +FN+ M+NH+ I+ KK+LE+Y GF+ L LVDV +GA ++ I YP
Sbjct: 166 YHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPT 225
Query: 204 ITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I G+NFDLP+VI AP V HV GDMF VPSG I K +L +WSD+ C +LKNCY
Sbjct: 226 IKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDTILMKWILHDWSDQHCATLLKNCY 285
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
DALP HG+ + + LP +PE + ++ + +D++M P + R EF+ALA
Sbjct: 286 DALP---AHGKV-VLVQCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALAR 341
Query: 321 AAGFGTIKVICRSYCYWVIEFYK 343
AGF +K W IEF K
Sbjct: 342 GAGFTGVKSTYIYANAWAIEFTK 364
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 86.4 bits (214), Expect = 4e-19
Identities = 37/89 (41%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
+A+ G+ F+Y D R +FN+ M NH+ I GFE L LVDV GG+G
Sbjct: 157 KAY-GMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGAT 215
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSP 80
++ I Y I+G+NFDLPHVI A P
Sbjct: 216 VAAIAAHYPTIKGVNFDLPHVISEAPQFP 244
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Length = 364 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 72 VIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVI 131
+ N ++P S+ + +D++M PG +ER EF ALA GAGF +K W I
Sbjct: 301 LPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQALARGAGFTGVKSTYIYANAWAI 360
Query: 132 EFYK 135
EF K
Sbjct: 361 EFTK 364
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 5e-63
Identities = 93/203 (45%), Positives = 125/203 (61%), Gaps = 7/203 (3%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y + +FN+ M +++ I MKKILE+Y GF+ L +VDV GA S+IV YP
Sbjct: 168 YHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPS 227
Query: 204 ITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I INFDLP+VI++AP VEH+ GDMF VP G AIF K + +WSDE CLK+LKNCY
Sbjct: 228 INAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKGDAIFIKWICHDWSDEHCLKLLKNCY 287
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
ALP HG+ + ++ LP SP+ S + ++ D +M P K RT EF+ALAM
Sbjct: 288 AALP---DHGKV-IVAEYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAM 343
Query: 321 AAGFGTIKVICRSYCYWVIEFYK 343
A+GF KV ++ +V+EF K
Sbjct: 344 ASGFRGFKVASCAFNTYVMEFLK 366
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 86.0 bits (213), Expect = 5e-19
Identities = 36/89 (40%), Positives = 52/89 (58%), Gaps = 11/89 (12%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
+A+ G+++FDY D R+ +FN+ M +++ I GFE L +VDV GG G
Sbjct: 159 KAY-GMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAV 217
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSP 80
S+IV Y I INFDLPHVI++A +
Sbjct: 218 ASMIVAKYPSINAINFDLPHVIQDAPAFS 246
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 1kyz_A* 1kyw_A* Length = 368 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 2e-13
Identities = 24/63 (38%), Positives = 35/63 (55%)
Query: 74 ENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVIEF 133
+ S ++ + D +M PG KERT +EF ALA+ +GF KV A+ +V+EF
Sbjct: 305 PSPDPSIATKVVIHTDALMLAYNPGGKERTEKEFQALAMASGFRGFKVASCAFNTYVMEF 364
Query: 134 YKT 136
KT
Sbjct: 365 LKT 367
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 2e-61
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 6/202 (2%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
+L P FN +M + + ++ + + F L+ +VDV G +I T+P+
Sbjct: 153 FLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK 212
Query: 204 ITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
+ I FD P V++N + +V GDMF ++P+ A+ K +L NW+D+ CL+ILK C
Sbjct: 213 LKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCK 272
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
+A+ K G+ + + + + + + L +D+ M K R E+K L +
Sbjct: 273 EAVTNDGKRGKV-TIIDMVIDKKKDENQVTQIKLLMDVNM--ACLNGKERNEEEWKKLFI 329
Query: 321 AAGFGTIKVICRSYCYWVIEFY 342
AGF K+ + +IE Y
Sbjct: 330 EAGFQHYKISPLTGFLSLIEIY 351
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 91.0 bits (226), Expect = 7e-21
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 20/111 (18%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
G +D+ K+ FN +M + + + F+ L +VDV GG G
Sbjct: 144 VTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTT 202
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF---PGA 99
+I T+ +++ I FD P V+EN S S + V ++F P A
Sbjct: 203 AKIICETFPKLKCIVFDRPQVVENLSGSN------NLTYVGGDMFTSIPNA 247
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Length = 352 | Back alignment and structure |
|---|
Score = 57.1 bits (138), Expect = 2e-09
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 2/61 (3%)
Query: 74 ENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVIEF 133
+ + V++ +DV M KER EE+ L I AGF K+ +IE
Sbjct: 293 KKKDENQVTQIKLLMDVNM--ACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEI 350
Query: 134 Y 134
Y
Sbjct: 351 Y 351
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 194 bits (494), Expect = 3e-59
Identities = 84/204 (41%), Positives = 124/204 (60%), Gaps = 9/204 (4%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
++ M +FN+SM + A MK++LEIY GF+ + LVDV G N+ LI++ YP
Sbjct: 174 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL 233
Query: 204 ITGINFDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I GINFDLP VI+NAP +EHV GDMF +VP G A+ K+V NWSDE+C++ L NC+
Sbjct: 234 IKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCH 293
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
AL +G+ + + LPE P S ++ + TLD +M + + RT +++ L+
Sbjct: 294 KALS---PNGKV-IIVEFILPEEPNTSEESKLVSTLDNLM-FITVGGRERTEKQYEKLSK 348
Query: 321 AAGFGTIKVICRSYC-YWVIEFYK 343
+GF +V CR++ V+EFYK
Sbjct: 349 LSGFSKFQVACRAFNSLGVMEFYK 372
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 84.9 bits (210), Expect = 1e-18
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
H G+ +++ KD ++ +FN+SM + A GFE ++ LVDV GG G N
Sbjct: 165 NVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRN 223
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSP 80
+ LI++ Y I+GINFDLP VIENA
Sbjct: 224 LELIISKYPLIKGINFDLPQVIENAPPLS 252
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Length = 372 | Back alignment and structure |
|---|
Score = 62.6 bits (152), Expect = 4e-11
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 74 ENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYC-YWVIE 132
E ++S S+ +ST+D +M+ G +ERT +++ L+ +GF +V CRA+ V+E
Sbjct: 311 EEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGVME 369
Query: 133 FYK 135
FYK
Sbjct: 370 FYK 372
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 4e-58
Identities = 62/197 (31%), Positives = 96/197 (48%), Gaps = 5/197 (2%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
L++F +M + + + + E + F+ L+ LVDV G LI +P +
Sbjct: 163 SSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTV 222
Query: 209 FDLPYVIKNAPC---VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPK 265
FD P V+ N + V GDMF ++PS A+ K VL +W+DEQ LKILKN +A+
Sbjct: 223 FDQPQVVGNLTGNENLNFVGGDMFKSIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISH 282
Query: 266 SRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325
K G+ + + E+ + + L D+VM +F K RT E++ L AGF
Sbjct: 283 KGKDGKV-IIIDISIDETSDDRGLTELQLDYDLVMLTMFL-GKERTKQEWEKLIYDAGFS 340
Query: 326 TIKVICRSYCYWVIEFY 342
+ K+ S +IE Y
Sbjct: 341 SYKITPISGFKSLIEVY 357
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 80.7 bits (199), Expect = 3e-17
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 13/91 (14%)
Query: 2 RAHNGLHLFDYASKDARLQNL--FNQSMHNHTAI----------GFEELNELVDVAGGLG 49
A G +D+ +KD+ L F +M + + + FE L LVDV GG G
Sbjct: 147 CAT-GESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTG 205
Query: 50 VNMSLIVNTYSQIRGINFDLPHVIENASSSP 80
LI + ++ FD P V+ N + +
Sbjct: 206 GVTKLIHEIFPHLKCTVFDQPQVVGNLTGNE 236
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Length = 358 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 8e-10
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 74 ENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVIEF 133
E + ++ D+VM +F G KERT +E+ L AGF + K+ + +IE
Sbjct: 298 ETSDDRGLTELQLDYDLVMLTMFLG-KERTKQEWEKLIYDAGFSSYKITPISGFKSLIEV 356
Query: 134 Y 134
Y
Sbjct: 357 Y 357
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 3e-53
Identities = 47/207 (22%), Positives = 75/207 (36%), Gaps = 18/207 (8%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y + L+ + M+ +A + F + DV G + ++ +P
Sbjct: 150 YFDGDAEVEALYYEGMETVSAAEHLILARAG-DFPATGTVADVGGGRGGFLLTVLREHPG 208
Query: 204 ITGINFDLPYVIKNAPC--------VEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKI 255
+ G+ D V+ + VEGD VP K +L NW DE ++I
Sbjct: 209 LQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVHVLKRILHNWGDEDSVRI 268
Query: 256 LKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315
L NC +P HGR L +PE + +D +M + RTA E
Sbjct: 269 LTNCRRVMP---AHGRV-LVIDAVVPEGND----AHQSKEMDFMML-AARTGQERTAAEL 319
Query: 316 KALAMAAGFGTIKVICRSYCYWVIEFY 342
+ L AAG +V+ S +
Sbjct: 320 EPLFTAAGLRLDRVVGTSSVMSIAVGV 346
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 3e-20
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI---------GFEELNELVDVAGGLGVNM 52
G L Y DA ++ L+ + M +A F + DV GG G +
Sbjct: 141 DIF-GSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFL 199
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
++ + ++G+ D V+
Sbjct: 200 LTVLREHPGLQGVLLDRAEVVARH 223
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Length = 348 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 3e-07
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)
Query: 71 HVIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWV 130
V+ + + S+ +D +M +ERT E L AG +V+ + +
Sbjct: 287 AVVPEGNDAHQSK---EMDFMML-AARTGQERTAAELEPLFTAAGLRLDRVVGTSSVMSI 342
Query: 131 IEFY 134
Sbjct: 343 AVGV 346
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 177 bits (452), Expect = 5e-53
Identities = 45/216 (20%), Positives = 84/216 (38%), Gaps = 31/216 (14%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
P LFN++M + + ++ Y F VD+ G+ M+ +++ +P
Sbjct: 168 LTHEDPKARELFNRAMGSVSLTEAGQVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPG 226
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQC 252
+ G + P V + A E + GD F +P G K VL +W D+
Sbjct: 227 LRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADVYLIKHVLHDWDDDDV 286
Query: 253 LKILKNCYDALPKSRKHGRT----QLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAK 308
++IL+ A+ R L + E P S+ L +D+++ +
Sbjct: 287 VRILRRIATAMK---PDSRLLVIDNL-----IDERPAAST-----LFVDLLLL-VLVGGA 332
Query: 309 GRTAGEFKALAMAAGFGTIKVI-CRSYCYWVIEFYK 343
R+ EF AL +G + + C + ++E +
Sbjct: 333 ERSESEFAALLEKSGLRVERSLPCGAGPVRIVEIRR 368
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 9e-20
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNM 52
A+ G + +D + + LFN++M + + A F VD+ GG G M
Sbjct: 159 VAN-GTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLM 217
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
+ +++ + +RG + P V E A
Sbjct: 218 AAVLDAFPGLRGTLLERPPVAEEA 241
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Length = 369 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 4e-08
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 72 VIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVI-CRAYCYWV 130
VI+N + + +D+++ + G ER+ EF AL +G + + C A +
Sbjct: 305 VIDNLIDERPAASTLFVDLLLL-VLVGGAERSESEFAALLEKSGLRVERSLPCGAGPVRI 363
Query: 131 IEFYK 135
+E +
Sbjct: 364 VEIRR 368
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 174 bits (442), Expect = 2e-51
Identities = 50/216 (23%), Positives = 77/216 (35%), Gaps = 24/216 (11%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
L+ + + F+ M + + + Y + ++ ++DV G ++ I P
Sbjct: 148 DLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPH 206
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQC 252
+ G +L + A V EGD F +P + VLLNWSDE
Sbjct: 207 LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDA 266
Query: 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312
L IL+ C AL GR L R E LD+ M F + RT
Sbjct: 267 LTILRGCVRALE---PGGRL-LVLDRADVEGDGAD--RFFSTLLDLRML-TFMGGRVRTR 319
Query: 313 GEFKALAMAAGFGTIKVI-----CRSYCYWVIEFYK 343
E LA +AG + + ++EF
Sbjct: 320 DEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTA 355
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 3e-20
Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNM 52
+ G ++ S D L + F+ M A + + ++DV GG G +
Sbjct: 139 GRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGML 197
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
+ I +RG +L E A
Sbjct: 198 AAIALRAPHLRGTLVELAGPAERA 221
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Length = 374 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 12/53 (22%), Positives = 19/53 (35%), Gaps = 6/53 (11%)
Query: 89 DVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVI-----CRAYCYWVIEFYKT 136
D+ M G + RT +E LA AG + + ++EF
Sbjct: 305 DLRMLTFMGG-RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 167 bits (424), Expect = 3e-49
Identities = 44/213 (20%), Positives = 72/213 (33%), Gaps = 33/213 (15%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
L P++ F+ M +H + I Y + L +VDV G +S ++ +
Sbjct: 135 DLGSDPVLSASFDTLMSHHLELDYTGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHED 193
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQC 252
++G DL A + V G F +P+G +VL +W D
Sbjct: 194 LSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAGGYVLSAVLHDWDDLSA 253
Query: 253 LKILKNCYDALPKSRKHGR----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAK 308
+ IL+ C +A G + + +D+ M F K
Sbjct: 254 VAILRRCAEAAG---SGGVVLVIEAV-----AGDEHA-------GTGMDLRMLTYFG-GK 297
Query: 309 GRTAGEFKALAMAAGFGTIKVICRSYCYWVIEF 341
R+ E LA AG SY ++E
Sbjct: 298 ERSLAELGELAAQAGLAVRAAHPISY-VSIVEM 329
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 8e-20
Identities = 18/84 (21%), Positives = 30/84 (35%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNM 52
+ G ++ D L F+ M +H + L +VDV GG G +
Sbjct: 126 VRY-GTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLL 184
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
S ++ + + G DL A
Sbjct: 185 SALLTAHEDLSGTVLDLQGPASAA 208
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Length = 332 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 8e-06
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 80 PVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVIEF 133
+ +D+ M F G KER++ E LA AG +Y ++E
Sbjct: 278 GDEHAGTGMDLRMLTYF-GGKERSLAELGELAAQAGLAVRAAHPISY-VSIVEM 329
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 165 bits (421), Expect = 1e-48
Identities = 46/219 (21%), Positives = 77/219 (35%), Gaps = 33/219 (15%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
L P + F+ + + Y + ++ ++DV G + I P
Sbjct: 149 DLAGRPDLRASFDSLLACDQDVAFDAPAAAY-DWTNVRHVLDVGGGKGGFAAAIARRAPH 207
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQC 252
++ ++ + A V+ VEGD F +P AI VLLNW D
Sbjct: 208 VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDA 267
Query: 253 LKILKNCYDALPKSRKHGRTQLRSKRGL----PESPEFSSINRNILTLDIVMYDLFPQAK 308
++IL C +AL GR + + +S N LD+ M +F
Sbjct: 268 VRILTRCAEALE---PGGR--------ILIHERDDLHENSFNEQFTELDLRML-VFLGGA 315
Query: 309 GRTAGEFKALAMAAGFGTIKVI-----CRSYCYWVIEFY 342
RT ++ LA +AG +V Y ++
Sbjct: 316 LRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLLVLA 354
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 4e-20
Identities = 11/84 (13%), Positives = 28/84 (33%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNM 52
+ G ++ + L+ F+ + A + + ++DV GG G
Sbjct: 140 SIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFA 198
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
+ I + ++ ++ A
Sbjct: 199 AAIARRAPHVSATVLEMAGTVDTA 222
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Length = 360 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 5e-04
Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 72 VIEN--ASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVI-----CR 124
+ E + + + +D+ M G RT E+++ LA AG +V
Sbjct: 286 IHERDDLHENSFNEQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTI 344
Query: 125 AYCYWVIEFY 134
Y ++
Sbjct: 345 PYDLSLLVLA 354
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-47
Identities = 32/217 (14%), Positives = 78/217 (35%), Gaps = 29/217 (13%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y + F + +++ ++ +LE K +KK++DV +G + ++ +P+
Sbjct: 156 YPPVTREDNLYFEEIHRSNAKFAIQLLLEEAK-LDGVKKMIDVGGGIGDISAAMLKHFPE 214
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFV-NVPSGQAIFTKSVLLNWSDEQC 252
+ +LP I + + D++ + P A+ +L + +++
Sbjct: 215 LDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFCRILYSANEQLS 274
Query: 253 LKILKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307
+ K +DA+ GR + L M F
Sbjct: 275 TIMCKKAFDAMR---SGGRLLILDMVIDDPENPNFDYLSH------YILGAGM--PFSVL 323
Query: 308 KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344
+ +K + + G+ + ++ R Y + +++ KP
Sbjct: 324 GFKEQARYKEILESLGYKDVTMV-RKYDHLLVQAVKP 359
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Length = 359 | Back alignment and structure |
|---|
Score = 76.7 bits (189), Expect = 7e-16
Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 9/81 (11%)
Query: 5 NGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLI 55
N Y F + ++ + + +++DV GG+G + +
Sbjct: 149 NFKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLEEAKLDGVKKMIDVGGGIGDISAAM 208
Query: 56 VNTYSQIRGINFDLPHVIENA 76
+ + ++ +LP I+
Sbjct: 209 LKHFPELDSTILNLPGAIDLV 229
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 159 bits (404), Expect = 2e-46
Identities = 40/215 (18%), Positives = 71/215 (33%), Gaps = 31/215 (14%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
YL P F +M+ + +I + F + VDV G I+ P
Sbjct: 135 YLKRCPDAGRRFLLAMKASN-LAFHEIPRLL-DF-RGRSFVDVGGGSGELTKAILQAEPS 191
Query: 204 ITGINFDLPYVIKNAPC----------VEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQC 252
G+ D + A V V GDM VPS ++ + +
Sbjct: 192 ARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIYLLSRIIGDLDEAAS 251
Query: 253 LKILKNCYDALPKSRKHGRT----QLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAK 308
L++L NC +A+ GR + + S + + D+ ++ + +
Sbjct: 252 LRLLGNCREAMA---GDGRVVVIERT-----ISASEP----SPMSVLWDVHLF-MACAGR 298
Query: 309 GRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343
RT E L GF +++ +I +
Sbjct: 299 HRTTEEVVDLLGRGGFAVERIVDLPMETRMIVAAR 333
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 82.3 bits (204), Expect = 6e-18
Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 8/82 (9%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAIGFE-------ELNELVDVAGGLGVNMSL 54
A G + Y + F +M E VDV GG G
Sbjct: 126 LAF-GEDFYSYLKRCPDAGRRFLLAMKASNLAFHEIPRLLDFRGRSFVDVGGGSGELTKA 184
Query: 55 IVNTYSQIRGINFDLPHVIENA 76
I+ RG+ D + A
Sbjct: 185 ILQAEPSARGVMLDREGSLGVA 206
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Length = 334 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 2e-07
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 72 VIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVI 131
I + SP+S DV ++ + + RT EE L GF +++ +I
Sbjct: 274 TISASEPSPMSV---LWDVHLF-MACAGRHRTTEEVVDLLGRGGFAVERIVDLPMETRMI 329
Query: 132 EFYK 135
+
Sbjct: 330 VAAR 333
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 139 bits (351), Expect = 1e-38
Identities = 35/214 (16%), Positives = 66/214 (30%), Gaps = 31/214 (14%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYK-GFKELKKLVDVASCLGANMSLIVNTYPQITGI 207
+ F ++M A + I ++ E K++D+++ G + P
Sbjct: 134 HPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGIAVAQHNPNAEIF 193
Query: 208 NFDLPYVIKNAPC----------VEHVEGDMFVNVPSGQA--IFTKSVLLNWSDEQCLKI 255
D V++ A + G F + + L ++ C ++
Sbjct: 194 GVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFLHHFDVATCEQL 253
Query: 256 LKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310
L+ AL G+ S R P +VM P
Sbjct: 254 LRKIKTALA---VEGKVIVFDFIPNSDRITPPDA---------AAFSLVMLATTPNGDAY 301
Query: 311 TAGEFKALAMAAGFGTIKVIC-RSYCYWVIEFYK 343
T E++++ AGF ++ + VI YK
Sbjct: 302 TFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 10/83 (12%), Positives = 25/83 (30%), Gaps = 11/83 (13%)
Query: 5 NGLHLFDYASKDARLQNLFNQSMHNHTAIGFEELNE-----------LVDVAGGLGVNMS 53
+ S + + F ++M A + + + ++D++ G+
Sbjct: 122 TAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLVNENKIEPLKVLDISASHGLFGI 181
Query: 54 LIVNTYSQIRGINFDLPHVIENA 76
+ D V+E A
Sbjct: 182 AVAQHNPNAEIFGVDWASVLEVA 204
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Length = 335 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)
Query: 89 DVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVIC-RAYCYWVIEFYK 135
+VM P T E+ ++ AGF ++ VI YK
Sbjct: 288 SLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSLPTTQQQVIVAYK 335
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 134 bits (338), Expect = 1e-36
Identities = 27/215 (12%), Positives = 63/215 (29%), Gaps = 34/215 (15%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
+ FN +M + ++ + E+ F + ++D+A G ++ ++ +PQ+TG
Sbjct: 150 TRARDAFNDAMVRLSQPMVDVVSELG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQI 208
Query: 209 FDLPYVIKNAPC----------VEHVEGDMFVNVPSGQ----AIFTKSVLLNWSDEQCLK 254
+DLP A VE E ++ + L + + +
Sbjct: 209 WDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCLHYFDAREARE 268
Query: 255 ILKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG 309
++ + + G + R P + M +
Sbjct: 269 VIGHAAGLVK---PGGALLILTMTMNDDRVTPALS---------ADFSLHMMVNTNHGEL 316
Query: 310 RTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344
+ AG + Y ++ +
Sbjct: 317 HPTPWIAGVVRDAGLAVGERSIGR--YTLLIGQRS 349
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Length = 352 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 17/80 (21%), Positives = 33/80 (41%), Gaps = 9/80 (11%)
Query: 6 GLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIV 56
+ D R ++ FN +M + F ++D+AGG G ++ ++
Sbjct: 139 AFQQESRFAHDTRARDAFNDAMVRLSQPMVDVVSELGVFARARTVIDLAGGHGTYLAQVL 198
Query: 57 NTYSQIRGINFDLPHVIENA 76
+ Q+ G +DLP + A
Sbjct: 199 RRHPQLTGQIWDLPTTRDAA 218
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-33
Identities = 29/217 (13%), Positives = 68/217 (31%), Gaps = 30/217 (13%)
Query: 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGIN 208
+ + ++ K LEI K+L+D+ G + V ++
Sbjct: 150 EQVQKSWFGFDHFYSDQSFGKALEIV-FSHHPKRLLDIGGNTGKWATQCVQYNKEVEVTI 208
Query: 209 FDLPYVIKNAPC----------VEHVEGDMF---VNVPSGQ-AIFTKSVLLNWSDEQCLK 254
DLP ++ + ++ V P+G A++ L +S+E+ +
Sbjct: 209 VDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQFLDCFSEEEVIS 268
Query: 255 ILKNCYDALPKSRKHGR-----TQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG 309
IL ++ K + T +R S + I+ + +K
Sbjct: 269 ILTRVAQSIG---KDSKVYIMETLWDRQRYETASYCLTQISLYFTAM------ANGNSKM 319
Query: 310 RTAGEFKALAMAAGFGTIKVI-CRSYCYWVIEFYKPK 345
+ + AG ++ + +++ +
Sbjct: 320 FHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLKE 356
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Length = 363 | Back alignment and structure |
|---|
Score = 62.0 bits (151), Expect = 6e-11
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 10/78 (12%)
Query: 9 LFDYASKD-ARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNT 58
+++ S+ ++Q + H ++ + L+D+ G G + V
Sbjct: 141 IYEGLSQLPEQVQKSWFGFDHFYSDQSFGKALEIVFSHHPKRLLDIGGNTGKWATQCVQY 200
Query: 59 YSQIRGINFDLPHVIENA 76
++ DLP +E
Sbjct: 201 NKEVEVTIVDLPQQLEMM 218
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 3e-04
Identities = 56/332 (16%), Positives = 100/332 (30%), Gaps = 88/332 (26%)
Query: 53 SLIVNTYSQIRGINFDLPHVIENASSSPVSR--NISTIDVVMYNLFPGAKERTMEEFNAL 110
S++ Y + R ++ V + VSR + + L P +
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVF---AKYNVSRLQPYLKLRQALLELRPAKN---------V 153
Query: 111 AI-G-AGFG----TIKVICRAYCYWVIEFYKTMHIMDC-IY-LTM---------LPMMLN 153
I G G G + V C +Y K MD I+ L + L M+
Sbjct: 154 LIDGVLGSGKTWVALDV-CLSY--------KVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204
Query: 154 LFNQSMQNHTAI------VMKKILEIYKGFKELKKLVDVASCLGANMSLI---VNTYPQI 204
L Q N T+ + +I I + L K +CL L+ V +
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVLLNVQN-AKA 258
Query: 205 TGIN-FDL--PYVI--KNAPCVEHVEGDMFVNVPSGQAI--FTKSVLLNWSDEQCLKILK 257
N F+L ++ + + + ++ T + LK L
Sbjct: 259 --WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK----SLLLKYLD 312
Query: 258 NCYDALPKSRKHGRTQL-----RSKRGLPESPE-FSSINRNILTLDIVM-YDLFPQAKGR 310
LP+ + S R + + + +N + LT I ++ A+ R
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 311 TAGEFKALAMAAGFG-----TIKVICRSYCYW 337
F L++ F ++ W
Sbjct: 373 KM--FDRLSV---FPPSAHIPTILLSL---IW 396
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 100.0 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 100.0 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 100.0 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 100.0 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 100.0 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 100.0 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 100.0 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 100.0 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 100.0 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 100.0 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 100.0 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 100.0 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 100.0 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 100.0 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 100.0 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 100.0 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.86 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.82 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.76 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.76 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.75 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.75 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.74 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.73 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.71 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.71 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.71 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.7 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.7 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.7 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.69 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.69 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.69 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.67 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.67 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.67 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.67 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.66 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.65 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.65 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.64 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.64 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.64 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.64 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.64 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.63 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.62 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.62 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.62 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.62 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.62 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.62 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.61 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.61 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.61 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.6 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.6 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.6 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.59 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.59 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.59 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.58 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.57 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.57 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.55 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.55 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.54 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.54 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.53 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.52 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.52 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.51 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.5 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.48 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.48 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.47 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.47 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.46 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.45 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.45 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.45 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.45 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.44 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.43 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.42 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.42 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.41 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.4 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.4 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.39 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.37 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.37 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.36 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.36 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.36 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.33 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.32 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.32 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.3 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.3 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.3 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.29 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.29 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.29 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.29 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.28 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.27 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.27 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.27 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.26 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.26 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.26 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.25 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.25 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.24 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.24 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.23 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.23 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.23 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.21 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.21 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.2 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.2 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.2 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.2 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.19 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.19 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.19 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.18 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.17 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.16 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.16 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.16 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.15 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.15 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.14 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.13 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.12 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.12 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.11 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.1 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.1 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.1 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.1 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.09 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.09 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.09 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.09 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.08 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.08 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.08 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.08 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.08 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.07 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.07 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.05 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.05 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.04 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.04 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.04 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.03 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.03 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.03 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.02 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.02 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.02 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.0 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 98.99 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 98.99 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 98.99 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 98.98 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 98.97 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 98.96 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 98.95 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.95 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 98.95 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 98.95 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 98.94 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 98.94 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 98.92 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.92 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 98.92 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 98.91 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.9 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.9 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 98.9 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.9 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 98.85 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 98.84 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 98.83 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 98.83 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 98.82 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.82 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 98.81 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.81 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.81 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 98.81 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.8 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.8 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 98.8 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.78 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 98.77 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 98.77 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 98.77 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.77 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 98.76 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.76 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.76 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 98.76 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.75 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 98.74 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.74 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 98.74 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.73 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 98.71 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.7 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.68 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.68 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.68 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.67 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 98.66 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.65 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.65 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.64 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.61 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 98.56 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.55 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.54 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.53 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 98.5 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.49 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.45 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.45 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.44 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.43 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.42 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 98.41 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.4 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.4 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.36 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.33 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.32 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.31 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.3 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.29 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.23 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.22 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.2 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.19 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.19 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.18 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.17 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.14 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.05 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.05 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.04 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.03 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.0 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 97.99 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 97.97 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.94 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.93 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 97.93 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 97.92 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.88 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 97.87 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 97.71 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 97.69 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 97.64 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 97.63 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.56 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 97.49 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 97.34 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 97.28 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.28 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.26 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 97.24 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.2 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.01 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.0 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 97.0 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 96.98 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 96.94 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.86 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.77 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 96.56 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 96.55 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 96.54 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 96.44 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 95.96 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 95.87 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 95.38 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 95.35 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.31 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 94.34 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 93.97 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 93.94 | |
| 3mq0_A | 275 | Transcriptional repressor of the blcabc operon; he | 93.2 | |
| 3r4k_A | 260 | Transcriptional regulator, ICLR family; DNA/RNA-bi | 93.17 | |
| 2g7u_A | 257 | Transcriptional regulator; ICLR family, structural | 92.78 | |
| 2heo_A | 67 | Z-DNA binding protein 1; protein DLM1-Z-DNA comple | 92.62 | |
| 2ia2_A | 265 | Putative transcriptional regulator; SAD, PSI-2, st | 92.46 | |
| 3iht_A | 174 | S-adenosyl-L-methionine methyl transferase; YP_165 | 91.82 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 91.59 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 91.47 | |
| 2xrn_A | 241 | HTH-type transcriptional regulator TTGV; DNA-bindi | 91.44 | |
| 3cuo_A | 99 | Uncharacterized HTH-type transcriptional regulato; | 91.17 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 90.45 | |
| 1xmk_A | 79 | Double-stranded RNA-specific adenosine deaminase; | 90.23 | |
| 1y0u_A | 96 | Arsenical resistance operon repressor, putative; s | 89.74 | |
| 1mkm_A | 249 | ICLR transcriptional regulator; structural genomic | 89.74 | |
| 2o0y_A | 260 | Transcriptional regulator; ICLR-family, structural | 89.38 | |
| 2kko_A | 108 | Possible transcriptional regulatory protein (possi | 88.53 | |
| 2y75_A | 129 | HTH-type transcriptional regulator CYMR; DNA bindi | 88.42 | |
| 1qbj_A | 81 | Protein (double-stranded RNA specific adenosine D | 88.39 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 88.02 | |
| 3jth_A | 98 | Transcription activator HLYU; transcription factor | 87.74 | |
| 1ub9_A | 100 | Hypothetical protein PH1061; helix-turn-helix moti | 87.63 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 87.57 | |
| 1u2w_A | 122 | CADC repressor, cadmium efflux system accessory pr | 87.4 | |
| 3f6o_A | 118 | Probable transcriptional regulator, ARSR family pr | 86.86 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 86.83 | |
| 2hzt_A | 107 | Putative HTH-type transcriptional regulator YTCD; | 86.44 | |
| 3pqk_A | 102 | Biofilm growth-associated repressor; helix-turn-he | 86.42 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 86.0 | |
| 2oqg_A | 114 | Possible transcriptional regulator, ARSR family P; | 85.88 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 85.72 | |
| 1r1u_A | 106 | CZRA, repressor protein; zinc, DNA binding, transc | 85.45 | |
| 3lwf_A | 159 | LIN1550 protein, putative transcriptional regulato | 85.42 | |
| 4a5n_A | 131 | Uncharacterized HTH-type transcriptional regulato; | 85.36 | |
| 1qgp_A | 77 | Protein (double stranded RNA adenosine deaminase); | 85.31 | |
| 2fu4_A | 83 | Ferric uptake regulation protein; DNA binding doma | 85.11 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 84.92 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 84.65 | |
| 3t8r_A | 143 | Staphylococcus aureus CYMR; transcriptional regula | 83.75 | |
| 2qvo_A | 95 | Uncharacterized protein AF_1382; PSI, structural g | 83.7 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 83.46 | |
| 1oyi_A | 82 | Double-stranded RNA-binding protein; (alpha+beta) | 83.04 | |
| 3k69_A | 162 | Putative transcription regulator; putative transcr | 82.88 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 82.82 | |
| 2jsc_A | 118 | Transcriptional regulator RV1994C/MT2050; cadmium, | 82.78 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 82.72 | |
| 1r7j_A | 95 | Conserved hypothetical protein SSO10A; winged heli | 82.69 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 82.67 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 82.4 | |
| 3ech_A | 142 | MEXR, multidrug resistance operon repressor; winge | 82.3 | |
| 3f6v_A | 151 | Possible transcriptional regulator, ARSR family pr | 81.63 | |
| 1tbx_A | 99 | ORF F-93, hypothetical 11.0 kDa protein; sulfolobu | 81.51 | |
| 2pg4_A | 95 | Uncharacterized protein; structural genomics, join | 81.36 | |
| 3eco_A | 139 | MEPR; mutlidrug efflux pump regulator winged helix | 80.91 | |
| 1r1t_A | 122 | Transcriptional repressor SMTB; zinc, transcriptio | 80.62 | |
| 3hsr_A | 140 | HTH-type transcriptional regulator SARZ; helix-tur | 80.43 | |
| 1ylf_A | 149 | RRF2 family protein; structural genomics, transcri | 80.3 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 80.29 | |
| 2k02_A | 87 | Ferrous iron transport protein C; FEOC, iron-sulfu | 80.19 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 80.1 |
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-56 Score=419.30 Aligned_cols=308 Identities=18% Similarity=0.168 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----ee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MY 93 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y 93 (345)
++..||+.+++|++|++|| |||+| .+++.|+|++|||+++++ +++.+.|+||+|++.|++++..+ .|
T Consensus 14 ~l~~Gf~~s~~L~aa~eLg-lfd~L-~~~~~p~t~~eLA~~~g~-------~~~~l~rlLr~L~~~gll~~~~~~~~~~y 84 (353)
T 4a6d_A 14 DYANGFMVSQVLFAACELG-VFDLL-AEAPGPLDVAAVAAGVRA-------SAHGTELLLDICVSLKLLKVETRGGKAFY 84 (353)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHH-HHSSSCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHHHHcC-HHHHH-hcCCCCCCHHHHHHhhCc-------CHHHHHHHHHHHHHCCCEEEeccCcccee
Confidence 6889999999999999999 99999 544458999999999999 89999999999999999976543 79
Q ss_pred ecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcC---cchhhhhccCchhHHHHHHHHHHh
Q 044482 94 NLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMH---IMDCIYLTMLPMMLNLFNQSMQNH 162 (345)
Q Consensus 94 ~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g---~~~~~~~~~~~~~~~~f~~~m~~~ 162 (345)
+||++++. +.+++|.++++++.+.. +..++.|..| +++ |...+| .++|+++.++|+....|+++|...
T Consensus 85 ~~t~~s~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~L~~~vr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~aM~~~ 163 (353)
T 4a6d_A 85 RNTELSSDYLTTVSPTSQCSMLKYMG-RTSYRCWGHLADAVREGRNQYLETFGVPAEELFTAIYRSEGERLQFMQALQEV 163 (353)
T ss_dssp EECHHHHHHHSTTSTTCCHHHHHHHH-HTHHHHHTTHHHHHHHTSCCHHHHHSCCCSSHHHHHTSSHHHHHHHHHHHHTT
T ss_pred eCCHHHHHHhhcCCchHHHHHHHHhC-HHHHHHHHHHHHHHhcCCChhHHhcCCChHHHHHHHhhCHHHHHHHHHHHHHH
Confidence 99999987 88888888888887754 4567888887 333 666666 368899999999999999999999
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---------CceEEeccCCc-CC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---------CVEHVEGDMFV-NV 232 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---------ri~~~~gd~~~-~~ 232 (345)
+....+.+++.++ |+...+|||||||+|.++..++++||+++++++|+|+|++.++ ||+++.||||+ +.
T Consensus 164 ~~~~~~~~~~~~~-~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~ 242 (353)
T 4a6d_A 164 WSVNGRSVLTAFD-LSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242 (353)
T ss_dssp HHHHHHHHHHSSC-GGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHHHHHSCC--CCSEEEEESCTTTSCC
T ss_pred HHHHHHHHHHhcC-cccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHHHHhhhhcccCceeeecCccccCCC
Confidence 8888889999999 9999999999999999999999999999999999999988765 89999999998 45
Q ss_pred CCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 233 PSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 233 p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
|++|+|+++++||+|+|++|.+||++++++|+| ||+++|+ |.+.+++...+. ....+|+.||..+ +|++||.
T Consensus 243 ~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~p---gg~lli~-e~~~~~~~~~~~---~~~~~dl~ml~~~-~g~ert~ 314 (353)
T 4a6d_A 243 PEADLYILARVLHDWADGKCSHLLERIYHTCKP---GGGILVI-ESLLDEDRRGPL---LTQLYSLNMLVQT-EGQERTP 314 (353)
T ss_dssp CCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCT---TCEEEEE-ECCCCTTSCCCH---HHHHHHHHHHHSS-SCCCCCH
T ss_pred CCceEEEeeeecccCCHHHHHHHHHHHHhhCCC---CCEEEEE-EeeeCCCCCCCH---HHHHHHHHHHHhC-CCcCCCH
Confidence 566999999999999999999999999999999 9999999 999987655432 3466899999987 9999999
Q ss_pred HHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 313 GEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+||+++|++|||+++++++.++..++|+|+|-
T Consensus 315 ~e~~~ll~~AGf~~v~v~~~~~~~~~i~ArKg 346 (353)
T 4a6d_A 315 THYHMLLSSAGFRDFQFKKTGAIYDAILARKG 346 (353)
T ss_dssp HHHHHHHHHHTCEEEEEECCSSSCEEEEEECC
T ss_pred HHHHHHHHHCCCceEEEEEcCCceEEEEEEec
Confidence 99999999999999999999888999999984
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-52 Score=393.97 Aligned_cols=319 Identities=36% Similarity=0.556 Sum_probs=274.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-------- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-------- 89 (345)
++..+|+.+++|++|++|| |||.|...|+.|+|++|||+++++.. +++.+..++|+||+|++.|+|+++
T Consensus 26 ~l~~~~~~~~~l~~a~~Lg-ifd~L~~~g~~~~t~~eLA~~~g~~~--~~~~~~~l~rlLr~L~~~g~l~~~~~~~~~g~ 102 (364)
T 3p9c_A 26 QLASSSVLPMTLKNAIELG-LLEILVAAGGKSLTPTEVAAKLPSAA--NPEAPDMVDRILRLLASYNVVTCLVEEGKDGR 102 (364)
T ss_dssp HHTTTTHHHHHHHHHHHHT-HHHHHHHTTTCCBCHHHHHHTTTCTT--CTTHHHHHHHHHHHHHHTTSEEEEEEECSSSC
T ss_pred HHHHhHHHHHHHHHHHHCC-hHHHHhhcCCCCCCHHHHHHhcCCCC--CccchhhHHHHHHHHHhCCCEEEeccccCCCC
Confidence 4667788999999999999 99999443334799999999999411 111233999999999999999987
Q ss_pred -eEeeecCCCcccc-ccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHH
Q 044482 90 -VVMYNLFPGAKER-TMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQ 160 (345)
Q Consensus 90 -~~~y~~t~~s~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 160 (345)
+++|++|+.++.+ .++++.++++++.+..++..+..|.+| +++ |+..+|.++|+|+.++|+..+.|+++|.
T Consensus 103 ~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~ 182 (364)
T 3p9c_A 103 LSRSYGAAPVCKFLTPNEDGVSMAALALMNQDKVLMESWYYLKDAVLDGGIPFNKAYGMSAFEYHGTDPRFNRVFNEGMK 182 (364)
T ss_dssp EEEEEEECGGGGGSSCCTTSCCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCEEecCHHHHHHcCCCCCCCHHHHHHHhcCHHHHHHHhCHHHHHhhCCChHHHhcCCCHHHHHHhCHHHHHHHHHHHH
Confidence 4689999999885 444566899888776667778899998 333 7778899999999999999999999999
Q ss_pred HhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCE
Q 044482 161 NHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQA 237 (345)
Q Consensus 161 ~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~ 237 (345)
..+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|++|+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~D~~~~~p~~D~ 262 (364)
T 3p9c_A 183 NHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEVPSGDT 262 (364)
T ss_dssp HHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCCSE
T ss_pred HhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHHHhhhhcCCeEEEeCCcCCCCCCCCE
Confidence 98888788899988767888999999999999999999999999999999999999888 899999999998887799
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++++||+|+++++.++|++++++|+| ||+|+|+ |.+.++.............+|+.|+....+|++||.+||++
T Consensus 263 v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~m~~~~~~g~~rt~~e~~~ 338 (364)
T 3p9c_A 263 ILMKWILHDWSDQHCATLLKNCYDALPA---HGKVVLV-QCILPVNPEANPSSQGVFHVDMIMLAHNPGGRERYEREFQA 338 (364)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCBCSSCCSSHHHHHHHHHHHHHHHHCSSCCCCBHHHHHH
T ss_pred EEehHHhccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCcchhhhhHHHhHHHHHhcccCCccCCHHHHHH
Confidence 9999999999999999999999999999 9999999 99988765443222334568888885434899999999999
Q ss_pred HHHHCCCCceEEEecCCceEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+|++|||+.+++.+.++..++||++|
T Consensus 339 ll~~AGF~~v~~~~~~~~~~vie~~k 364 (364)
T 3p9c_A 339 LARGAGFTGVKSTYIYANAWAIEFTK 364 (364)
T ss_dssp HHHHTTCCEEEEEEEETTEEEEEEEC
T ss_pred HHHHCCCceEEEEEcCCceEEEEEeC
Confidence 99999999999999999999999986
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-51 Score=389.71 Aligned_cols=320 Identities=37% Similarity=0.541 Sum_probs=276.7
Q ss_pred HHHHHHHHHHHHhhhhccccccceeecc-C-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVA-G-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID------ 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~-g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~------ 89 (345)
++..+|+.+++|++|++|| |||.|... | +.+.|++|||++++.. +++++..++|+||+|++.|+|++.
T Consensus 27 ~l~~~~~~~~~l~~a~~Lg-lfd~L~~~~gp~~~~t~~eLA~~~~~~---~~~~~~~l~rlLr~L~~~gll~~~~~~~~~ 102 (368)
T 3reo_A 27 QLASAAVLPMALKAAIELD-VLEIMAKSVPPSGYISPAEIAAQLPTT---NPEAPVMLDRVLRLLASYSVVTYTLRELPS 102 (368)
T ss_dssp HHHTTTHHHHHHHHHHHTT-HHHHHHHHCCTTCCBCHHHHHTTSSCC---CTTHHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHHHCC-chhHHhhcCCCCCCcCHHHHHHhcCcC---CCcchhhHHHHHHHHHhCCCeEEecccCCC
Confidence 4677889999999999999 99999432 3 3469999999999831 122345999999999999999986
Q ss_pred ---eEeeecCCCccc-cccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHH
Q 044482 90 ---VVMYNLFPGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQS 158 (345)
Q Consensus 90 ---~~~y~~t~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~ 158 (345)
+++|++|+.++. +.++++.++++++.+..++..+..|.+| +++ |+..+|.++|+|+.++|+..+.|+++
T Consensus 103 g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~ 182 (368)
T 3reo_A 103 GKVERLYGLAPVCKFLTKNEDGVSLAPFLLLATDKVLLEPWFYLKDAILEGGIPFNKAYGMNIFDYHGTDHRINKVFNKG 182 (368)
T ss_dssp SCEEEEEEECTTHHHHSCCTTSCCSHHHHHHHTCHHHHGGGGGHHHHHHHCSCHHHHHSSSCHHHHHTTCHHHHHHHHHH
T ss_pred CcccceeCcCHHHHHHhCCCCCCCHHHHHHHhcCHHHHhhhhchHHHHhcCCCHHHHHhCCCHHHHHhhCHHHHHHHHHH
Confidence 368999999988 4555567899888776667778899988 333 77788999999999999999999999
Q ss_pred HHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCC
Q 044482 159 MQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 159 m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~ 235 (345)
|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|++
T Consensus 183 m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~ 262 (368)
T 3reo_A 183 MSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQDAPAFSGVEHLGGDMFDGVPKG 262 (368)
T ss_dssp HHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCC
T ss_pred HHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHHHHhhhhcCCCEEEecCCCCCCCCC
Confidence 9998888788899888767888999999999999999999999999999999999999888 8999999999988877
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|+++++||+|+++++.++|++++++|+| ||+|+|+ |.+.++....+...+....+|+.|+..+.+|++||.+||
T Consensus 263 D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~g~~rt~~e~ 338 (368)
T 3reo_A 263 DAIFIKWICHDWSDEHCLKLLKNCYAALPD---HGKVIVA-EYILPPSPDPSIATKVVIHTDALMLAYNPGGKERTEKEF 338 (368)
T ss_dssp SEEEEESCGGGBCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCCCSSCCCCHHHHHHHHHHHHHHHHSSBCCCCCHHHH
T ss_pred CEEEEechhhcCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCchhhhHHHhhhHHHHhhcCCCccCCHHHH
Confidence 999999999999999999999999999999 9999999 999887654433333446688888875448999999999
Q ss_pred HHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 316 KALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
+++|++|||+++++.+..+..++||++|+.
T Consensus 339 ~~ll~~AGF~~v~~~~~~~~~~vie~~k~~ 368 (368)
T 3reo_A 339 QALAMASGFRGFKVASCAFNTYVMEFLKTA 368 (368)
T ss_dssp HHHHHHTTCCEEEEEEEETTEEEEEEECCC
T ss_pred HHHHHHCCCeeeEEEEeCCCcEEEEEEeCC
Confidence 999999999999999999899999999863
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=367.53 Aligned_cols=310 Identities=17% Similarity=0.171 Sum_probs=272.6
Q ss_pred hcCHHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEee
Q 044482 14 SKDARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMY 93 (345)
Q Consensus 14 ~~~~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y 93 (345)
..--++..+|+.++++++|++|| |||.| .+| +.|++|||+++++ +++.++|+||+|++.|+|++.+++|
T Consensus 24 ~~l~~~~~~~~~~~~l~~a~~lg-lf~~l-~~g--~~t~~elA~~~g~-------~~~~l~rlLr~l~~~g~l~~~~~~y 92 (348)
T 3lst_A 24 LALYEEAMGYTYAAALRAAAAVG-VADHL-VDG--PRTPAELAAATGT-------DADALRRVLRLLAVRDVVRESDGRF 92 (348)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHT-GGGGG-TTS--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-chhHh-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHhCCCEEecCCEE
Confidence 33346788999999999999999 99999 543 7999999999999 7999999999999999999966699
Q ss_pred ecCCCccccccchhhhhhhhhccccchhhhhchHHHH---HH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 94 NLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWV---IE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 94 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
++|+.++.+.++++.++++++.+..++..++.|.+|. ++ |+..+|.++|+|+.++|+..+.|+++|...+...
T Consensus 93 ~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 172 (348)
T 3lst_A 93 ALTDKGAALRSDSPVPARAGILMFTDTMFWTMSHRVASALGPERPAFADIFGSSLDAYFDGDAEVEALYYEGMETVSAAE 172 (348)
T ss_dssp EECTTTGGGSTTSSSCSHHHHHHHTSHHHHHHHHTHHHHTCTTCCCHHHHHSSCHHHHHTTCHHHHHHHHHHHHHHHHTT
T ss_pred ecCHHHHHHhcCCCccHHHHHHHhcCHHHHHHHHHHHHHHhcCCChhhHHhCCCHHHHHHhCHHHHHHHHHHHHHhhhhh
Confidence 9999998877777778888887766666688898883 21 7777888999999999999999999999988887
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC--------CceEEeccCCcCCCCCCEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP--------CVEHVEGDMFVNVPSGQAI 238 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~--------ri~~~~gd~~~~~p~~D~i 238 (345)
.+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|+++..++ |++++.+|+++++|..|+|
T Consensus 173 ~~~~~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~~~~~~~~~~~~v~~~~~d~~~~~p~~D~v 251 (348)
T 3lst_A 173 HLILARAGD-FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVPHADVH 251 (348)
T ss_dssp HHHHHHHSC-CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHTTCCCCCGGGTTSEEEEECCTTTCCCCCSEE
T ss_pred HHHHHHhCC-ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhhcccccccCCCCCeEEEecCCCCCCCCCcEE
Confidence 888999998 9999999999999999999999999999999999998877432 7999999999888844999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
+++++||+|+|+++.++|++++++|+| ||+|+|. |.+.++...+. ....+|+.|+... ++++||.++|+++
T Consensus 252 ~~~~vlh~~~d~~~~~~L~~~~~~Lkp---gG~l~i~-e~~~~~~~~~~----~~~~~d~~~~~~~-~~~~~t~~e~~~l 322 (348)
T 3lst_A 252 VLKRILHNWGDEDSVRILTNCRRVMPA---HGRVLVI-DAVVPEGNDAH----QSKEMDFMMLAAR-TGQERTAAELEPL 322 (348)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEE-ECCBCSSSSCC----HHHHHHHHHHHTT-SCCCCBHHHHHHH
T ss_pred EEehhccCCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCcc----hhhhcChhhhhcC-CCcCCCHHHHHHH
Confidence 999999999999999999999999999 9999999 99887664322 3356788888775 9999999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
|+++||+++++.+..+..++|+++|.
T Consensus 323 l~~aGf~~~~~~~~~~~~~vie~~pa 348 (348)
T 3lst_A 323 FTAAGLRLDRVVGTSSVMSIAVGVPA 348 (348)
T ss_dssp HHHTTEEEEEEEECSSSCEEEEEEEC
T ss_pred HHHCCCceEEEEECCCCcEEEEEEeC
Confidence 99999999999997778999999873
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-48 Score=368.38 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=271.6
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-Ee-eec
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VM-YNL 95 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~-y~~ 95 (345)
++..+|+.+++++++++|+ |||.| .+ | +.|++|||+++++ +++.++|+||+|++.|+|++++ +. |++
T Consensus 44 ~l~~~~~~~~~l~~a~~lg-lf~~l-~~-g-~~t~~eLA~~~g~-------~~~~l~rlLr~L~~~g~l~~~~~~~~y~~ 112 (369)
T 3gwz_A 44 DILQGAWKARAIHVAVELG-VPELL-QE-G-PRTATALAEATGA-------HEQTLRRLLRLLATVGVFDDLGHDDLFAQ 112 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TGGGG-TT-S-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSSEECSSTTEEEC
T ss_pred HHHHHHHHHHHHHHHHHCC-hhhhh-cC-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHhCCCEEEeCCCceEec
Confidence 5778999999999999999 99999 54 3 7999999999999 7999999999999999999864 47 999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMK 168 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 168 (345)
|++++.|.++++.++++++.+..++..+..|.++ +++ |...+|.++|+|+.++|+..+.|+++|...+....+
T Consensus 113 t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 192 (369)
T 3gwz_A 113 NALSAVLLPDPASPVATDARFQAAPWHWRAWEQLTHSVRTGEASFDVANGTSFWQLTHEDPKARELFNRAMGSVSLTEAG 192 (369)
T ss_dssp CHHHHTTSCCTTCHHHHHHHHHHSHHHHHHHHTHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHhcCCchhHHHHHHHcCCHHHHHHHHhHHHHHhCCCChhHhhcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHH
Confidence 9999988777777889888876655567888887 333 777788889999999999999999999998888888
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ |++++.+|+++++|.+ |+
T Consensus 193 ~l~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~p~~~D~ 271 (369)
T 3gwz_A 193 QVAAAYD-FSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPGDFFETIPDGADV 271 (369)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTTCCCSSCSE
T ss_pred HHHHhCC-CccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHHHHHHhhhhcCcCCceEEeccCCCCCCCCCceE
Confidence 8999998 8888999999999999999999999999999999998887665 6999999999888855 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|+++++||+|+++++.++|++++++|+| ||+++|. |.+.++...+. ...+|+.|+... ++++||.++|++
T Consensus 272 v~~~~vlh~~~d~~~~~~L~~~~~~L~p---gG~l~i~-e~~~~~~~~~~-----~~~~d~~~~~~~-~g~~~t~~e~~~ 341 (369)
T 3gwz_A 272 YLIKHVLHDWDDDDVVRILRRIATAMKP---DSRLLVI-DNLIDERPAAS-----TLFVDLLLLVLV-GGAERSESEFAA 341 (369)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEE-EEBCCSSCCHH-----HHHHHHHHHHHH-SCCCBCHHHHHH
T ss_pred EEhhhhhccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCc-----hhHhhHHHHhhc-CCccCCHHHHHH
Confidence 9999999999999999999999999999 9999999 99887664321 356788888876 999999999999
Q ss_pred HHHHCCCCceEEEe-cCCceEEEEEEcC
Q 044482 318 LAMAAGFGTIKVIC-RSYCYWVIEFYKP 344 (345)
Q Consensus 318 ll~~aGf~~~~~~~-~~~~~~vi~~~k~ 344 (345)
+|+++||+++++.+ ..+..++|+++|.
T Consensus 342 ll~~aGf~~~~~~~~~~~~~svie~~~a 369 (369)
T 3gwz_A 342 LLEKSGLRVERSLPCGAGPVRIVEIRRA 369 (369)
T ss_dssp HHHTTTEEEEEEEECSSSSEEEEEEEEC
T ss_pred HHHHCCCeEEEEEECCCCCcEEEEEEeC
Confidence 99999999999999 5678999999984
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=364.08 Aligned_cols=302 Identities=18% Similarity=0.204 Sum_probs=266.7
Q ss_pred HHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-Eeeec
Q 044482 17 ARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNL 95 (345)
Q Consensus 17 ~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~ 95 (345)
-++..+|+.++++++|++|| |||.| .+ | |.|++|||+++++ +++.++|+||+|++.|++++++ +.|.+
T Consensus 10 ~~~~~g~~~~~~l~~a~~lg-lf~~l-~~-g-~~t~~elA~~~~~-------~~~~l~rlLr~l~~~gl~~~~~~~~y~~ 78 (332)
T 3i53_A 10 LRALADLATPMAVRVAATLR-VADHI-AA-G-HRTAAEIASAAGA-------HADSLDRLLRHLVAVGLFTRDGQGVYGL 78 (332)
T ss_dssp HHHHTCCHHHHHHHHHHHHT-HHHHH-HT-T-CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEECTTSBEEE
T ss_pred HHHHHhhHHHHHHHHHHHcC-hHHHH-hc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHhCCcEEecCCCeEEc
Confidence 36788999999999999999 99999 54 3 7999999999999 7999999999999999999874 69999
Q ss_pred CCCccccccchhhhhhhhhccccchhhh-hchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVIC-RAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVM 167 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 167 (345)
|++++.+.++++.++++++.+..++..+ ..|.+| +++ |+..+|.++|+++.++|+..+.|+.+|...+....
T Consensus 79 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 158 (332)
T 3i53_A 79 TEFGEQLRDDHAAGKRKWLDMNSAVGRGDLGFVELAHSIRTGQPAYPVRYGTSFWEDLGSDPVLSASFDTLMSHHLELDY 158 (332)
T ss_dssp CTTGGGGSTTCTTCCHHHHCTTSHHHHHGGGGGGHHHHHHHSSCSHHHHHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHhcCCchhHHHHHHHcCCHhHHHHHHHHhHHHHhcCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhH
Confidence 9999997667777899998877654445 778777 333 77778888999999999999999999999887777
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D 236 (345)
+.+++.++ +++..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|+++++|.+ |
T Consensus 159 ~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~p~~~D 237 (332)
T 3i53_A 159 TGIAAKYD-WAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPASAAHRRFLDTGLSGRAQVVVGSFFDPLPAGAG 237 (332)
T ss_dssp TTGGGSSC-CGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCSCS
T ss_pred HHHHHhCC-CCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHHHHHHhhhhcCcCcCeEEecCCCCCCCCCCCc
Confidence 78888888 8888999999999999999999999999999999999887665 6999999999888844 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|+++++||+|+|+++.++|++++++|+| ||+++|. |.+.++. . + ...+|+.|+... ++++||.++|+
T Consensus 238 ~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~-~-~-----~~~~d~~~~~~~-~~~~~t~~e~~ 305 (332)
T 3i53_A 238 GYVLSAVLHDWDDLSAVAILRRCAEAAGS---GGVVLVI-EAVAGDE-H-A-----GTGMDLRMLTYF-GGKERSLAELG 305 (332)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHHTT---TCEEEEE-ECCCC-----C-----CHHHHHHHHHHH-SCCCCCHHHHH
T ss_pred EEEEehhhccCCHHHHHHHHHHHHHhcCC---CCEEEEE-eecCCCC-C-c-----cHHHHHHHHhhC-CCCCCCHHHHH
Confidence 99999999999999999999999999999 9999999 9887765 2 1 246788888776 99999999999
Q ss_pred HHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 317 ALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
++|++|||+++++.+.++ .++||++|
T Consensus 306 ~ll~~aGf~~~~~~~~~~-~~vie~r~ 331 (332)
T 3i53_A 306 ELAAQAGLAVRAAHPISY-VSIVEMTA 331 (332)
T ss_dssp HHHHHTTEEEEEEEECSS-SEEEEEEE
T ss_pred HHHHHCCCEEEEEEECCC-cEEEEEee
Confidence 999999999999999988 99999986
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=360.65 Aligned_cols=316 Identities=23% Similarity=0.301 Sum_probs=269.4
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-------- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-------- 89 (345)
++..+|..+++|+++++|+ |||.|..+| .+.|++|||+++++ ++.+++.++|+||+|++.|+|++.
T Consensus 16 ~~~~~~~~~~~l~~a~~lg-if~~L~~~~-~~~t~~eLA~~~g~----~~~~~~~l~rlLr~L~~~gll~~~~~~~~~~~ 89 (358)
T 1zg3_A 16 KHVYNFVSSMALKSAMELG-IADAIHNHG-KPMTLSELASSLKL----HPSKVNILHRFLRLLTHNGFFAKTIVKGKEGD 89 (358)
T ss_dssp HHHTTHHHHHHHHHHHHHT-HHHHHHHHT-SCEEHHHHHHHTTC----CTTTHHHHHHHHHHHHHTTSEEEEEECCSSSS
T ss_pred HHHHHHHHHHHHHHHHHCC-hHhHHhhcC-CCcCHHHHHHhcCC----CCcchHHHHHHHHHHhhCCcEEEecccccccC
Confidence 3456889999999999999 999994433 37999999999999 222478999999999999999887
Q ss_pred ---eEeeecCCCccccccchhhhhhhhhccccchhhhhchHHH---HH----H--HhHhcCcchhhhhccCchhHH--HH
Q 044482 90 ---VVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VI----E--FYKTMHIMDCIYLTMLPMMLN--LF 155 (345)
Q Consensus 90 ---~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~----~--~~~~~g~~~~~~~~~~~~~~~--~f 155 (345)
++.|++|+.++.|.++++.++++++.+..++..++.|.+| ++ . |+..+|.++|+|+.++|+..+ .|
T Consensus 90 g~~~~~y~~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~~g~~~~~~~~~~p~~~~~~~f 169 (358)
T 1zg3_A 90 EEEEIAYSLTPPSKLLISGKPTCLSSIVKGALHPSSLDMWSSSKKWFNEDKEQTLFECATGESFWDFLNKDSESSTLSMF 169 (358)
T ss_dssp CCCEEEEEECHHHHTTCTTSTTCCHHHHHHHTSHHHHGGGGGHHHHHHCSCCCCHHHHHHSSCHHHHHTSGGGHHHHHHH
T ss_pred CCCCCEEeCCHHHHHHhCCCCccHHHHHHHhcCcHHHHHHHHHHHHHhCCCCCChHHHHhCCCHHHHHhcChhhhhHHHH
Confidence 3699999999887777777889988876666678888887 22 1 555678889999999999999 99
Q ss_pred HHHHHHhhHHHHHHHHHhc--cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCc
Q 044482 156 NQSMQNHTAIVMKKILEIY--KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFV 230 (345)
Q Consensus 156 ~~~m~~~~~~~~~~i~~~~--~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~ 230 (345)
+.+|...+.... .+++.+ + |++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++
T Consensus 170 ~~~m~~~~~~~~-~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~ 247 (358)
T 1zg3_A 170 QDAMASDSRMFK-LVLQENKRV-FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFK 247 (358)
T ss_dssp HHHHHHHHHTHH-HHHHHTHHH-HHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHHHHSSCCCCSSEEEEECCTTT
T ss_pred HHHHhcccHHHH-HHHHhcchh-ccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHHHHhhcccCCCcEEEeCccCC
Confidence 999998877666 788888 4 7888899999999999999999999999999999999999887 79999999999
Q ss_pred CCCCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 231 NVPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 231 ~~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
++|+.|+|+++++||+|+|+++.++|++++++|+|+++||+++|. |.+.++....+........+|+.|+... +|++|
T Consensus 248 ~~~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~g~~~ 325 (358)
T 1zg3_A 248 SIPSADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIII-DISIDETSDDRGLTELQLDYDLVMLTMF-LGKER 325 (358)
T ss_dssp CCCCCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEE-ECEECTTCSCHHHHHHHHHHHHHHHHHH-SCCCE
T ss_pred CCCCceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEE-EeccCCCCccchhhhHHHhhCHHHhccC-CCCCC
Confidence 777679999999999999999999999999999982226899999 9988766543211224466788888765 89999
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
|.++|+++|+++||+++++.+.++..++||++|
T Consensus 326 t~~e~~~ll~~aGf~~~~~~~~~~~~~vie~~~ 358 (358)
T 1zg3_A 326 TKQEWEKLIYDAGFSSYKITPISGFKSLIEVYP 358 (358)
T ss_dssp EHHHHHHHHHHTTCCEEEEEEETTTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCeeEEEecCCCcEEEEEeC
Confidence 999999999999999999999888889999986
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=355.77 Aligned_cols=314 Identities=23% Similarity=0.317 Sum_probs=267.4
Q ss_pred HHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE---eEeeec
Q 044482 19 LQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID---VVMYNL 95 (345)
Q Consensus 19 ~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~---~~~y~~ 95 (345)
+..+|..+++|+++++|+ ||+.|..++| +.|++|||+++++ ++.+++.+.|+||+|++.|+|++. ++.|++
T Consensus 23 ~~~~~~~~~~l~~a~~lg-if~~L~~~~~-~~t~~ela~~~~~----~~~~~~~l~rlLr~L~~~gll~~~~~~~~~y~~ 96 (352)
T 1fp2_A 23 HIYAFIDSMSLKWAVEMN-IPNIIQNHGK-PISLSNLVSILQV----PSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 96 (352)
T ss_dssp HHTTHHHHHHHHHHHHTT-HHHHHHHHTS-CEEHHHHHHHHTC----CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHCC-hhhhhhhcCC-CccHHHHHHHhCc----CCCChHHHHHHHHHHHhCCeEEEecCCCCeEeC
Confidence 456788999999999999 9999944333 7999999999999 222477999999999999999987 369999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HH-H----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHH
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VI-E----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVM 167 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~-~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 167 (345)
|+.++.|.+++|.++++++.+..++..+..|.+| ++ + |+..+|.++|+|+.++|+..+.|+++|...+....
T Consensus 97 t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~g~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~ 176 (352)
T 1fp2_A 97 TVASELLVRGSDLCLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLIN 176 (352)
T ss_dssp CHHHHTTSTTSSSCCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHH
T ss_pred CHHHHHHhCCCCccHHHHHHHhcCchHHHHHHHHHHHHHhcCCChHHHHcCCCHHHHHHhChHHHHHHHHHHHhcchhhh
Confidence 9999887777777888888776666667888887 34 2 66677889999999999999999999999887766
Q ss_pred HHHHHhc--cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCEEEecc
Q 044482 168 KKILEIY--KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKS 242 (345)
Q Consensus 168 ~~i~~~~--~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~i~~~~ 242 (345)
+. ++.+ + +++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|..|+|++++
T Consensus 177 ~~-~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~p~~D~v~~~~ 254 (352)
T 1fp2_A 177 LA-LRDCDFV-FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKY 254 (352)
T ss_dssp HH-HHTCHHH-HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEES
T ss_pred hH-HHhcccc-cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHHhhcccCCCcEEEeccccCCCCCccEEEeeh
Confidence 66 7777 5 7788899999999999999999999999999999999999888 79999999998777679999999
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAA 322 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~a 322 (345)
+||||+|+++.++|++++++|+|+++||+++|. |.+.++....+........+|+.|+. . ++++||.++|+++++++
T Consensus 255 ~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~-~-~g~~~t~~e~~~ll~~a 331 (352)
T 1fp2_A 255 ILHNWTDKDCLRILKKCKEAVTNDGKRGKVTII-DMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEA 331 (352)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEE-ECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHT
T ss_pred hhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEE-EeecCCCCCccchhhhHhhccHHHHh-c-cCCCCCHHHHHHHHHHC
Confidence 999999999999999999999983337899999 99887654321111234567877777 5 68999999999999999
Q ss_pred CCCceEEEecCCceEEEEEEc
Q 044482 323 GFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 323 Gf~~~~~~~~~~~~~vi~~~k 343 (345)
||+++++.+.++..++||++|
T Consensus 332 Gf~~~~~~~~~~~~~vie~~~ 352 (352)
T 1fp2_A 332 GFQHYKISPLTGFLSLIEIYP 352 (352)
T ss_dssp TCCEEEEEEEETTEEEEEEEC
T ss_pred CCCeeEEEecCCCcEEEEEeC
Confidence 999999999888889999986
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-46 Score=350.14 Aligned_cols=302 Identities=18% Similarity=0.175 Sum_probs=265.0
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLF 96 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t 96 (345)
++..+|..+++++++++|| ||+.| .+| +.|++|||+++++ +++.+.|+||+|++.|+|++.+ +.|++|
T Consensus 14 ~~~~~~~~~~~l~~~~~lg-i~~~l-~~~--~~t~~ela~~~~~-------~~~~l~r~Lr~L~~~g~l~~~~~~~y~~t 82 (334)
T 2ip2_A 14 QVVTGEWKSRCVYVATRLG-LADLI-ESG--IDSDETLAAAVGS-------DAERIHRLMRLLVAFEIFQGDTRDGYANT 82 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHH-HTT--CCSHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHcC-cHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHhCCceEecCCCeEecC
Confidence 4677899999999999999 99999 543 6899999999999 7999999999999999999876 599999
Q ss_pred CCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHH
Q 044482 97 PGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKK 169 (345)
Q Consensus 97 ~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~ 169 (345)
+.++.+. ++|.++++++.+..++.. ..|.+| +++ |+..+|.++|+++.++|+..+.|+++| ..+....+.
T Consensus 83 ~~s~~l~-~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~ 159 (334)
T 2ip2_A 83 PTSHLLR-DVEGSFRDMVLFYGEEFH-AAWTPACEALLSGTPGFELAFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHE 159 (334)
T ss_dssp HHHHTTS-SSTTCSHHHHHHHTTHHH-HHTTTHHHHHHHCCCHHHHHHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHH
T ss_pred HHHHHHh-CCCccHHHHHHHhcCchh-hHHHHHHHHHhcCCChhhhhcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHH
Confidence 9998866 667688888877655443 777777 333 777778899999999999999999999 888777788
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~i 238 (345)
+++.++ +++ .+|||||||+|.++..+++++|+.+++++|+|.+++.++ |++++.+|+++++|.+ |+|
T Consensus 160 ~~~~~~-~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v 237 (334)
T 2ip2_A 160 IPRLLD-FRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQEVPSNGDIY 237 (334)
T ss_dssp HHHHSC-CTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCTHHHHHHTHHHHHTTSEEEEESCTTTCCCSSCSEE
T ss_pred HHHhCC-CCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHHHHHHHHHhhcCCCCcEEEecCCCCCCCCCCCCEE
Confidence 999888 888 999999999999999999999999999999988887664 6999999999987765 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++++++|+|+++++.++|++++++|+| ||+++|. |.+.++...+ .....+|+.|+... ++++||.++|+++
T Consensus 238 ~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~~~l 308 (334)
T 2ip2_A 238 LLSRIIGDLDEAASLRLLGNCREAMAG---DGRVVVI-ERTISASEPS----PMSVLWDVHLFMAC-AGRHRTTEEVVDL 308 (334)
T ss_dssp EEESCGGGCCHHHHHHHHHHHHHHSCT---TCEEEEE-ECCBCSSSCC----HHHHHHHHHHHHHH-SCCCCBHHHHHHH
T ss_pred EEchhccCCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCCc----chhHHhhhHhHhhC-CCcCCCHHHHHHH
Confidence 999999999999999999999999999 9999999 9988765332 23456788888776 8999999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++++||+++++.+.++..++|+++|.
T Consensus 309 l~~aGf~~~~~~~~~~~~~~i~~~~~ 334 (334)
T 2ip2_A 309 LGRGGFAVERIVDLPMETRMIVAARA 334 (334)
T ss_dssp HHHTTEEEEEEEEETTTEEEEEEEEC
T ss_pred HHHCCCceeEEEECCCCCEEEEEEeC
Confidence 99999999999998888999999873
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-46 Score=353.75 Aligned_cols=318 Identities=33% Similarity=0.495 Sum_probs=258.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCc---hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-----
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLG---VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID----- 89 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~---~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~----- 89 (345)
++..+|..+++|++|++|+ |||.|..+ |+| .|++|||+++++. ..++.+++.++|+||+|++.|+|++.
T Consensus 30 ~l~~~~~~~~~l~~a~~lg-if~~L~~~-g~pg~~~t~~eLA~~~~~~-~~~~~~~~~l~rlLr~L~~~gll~~~~~~~~ 106 (372)
T 1fp1_D 30 VLTTNLVYPAVLNAAIDLN-LFEIIAKA-TPPGAFMSPSEIASKLPAS-TQHSDLPNRLDRMLRLLASYSVLTSTTRTIE 106 (372)
T ss_dssp HHHHTTHHHHHHHHHHHTT-HHHHHHTC-SSTTCCBCHHHHHTTSCGG-GCCTTHHHHHHHHHHHHHHTTSEEEEEEECT
T ss_pred HHHHHHHHHHHHHHHHHCC-hHHHHHhc-CCCCCCcCHHHHHHhcCCC-CCCCcChHHHHHHHHHHhhCCceEecccccC
Confidence 4566888999999999999 99999433 223 8999999999971 00122478999999999999999887
Q ss_pred ----eEeeecCCCccccccchh-hhhhhhhccccchhhhhchHHH---HH---H--HhHhcCcchhhhhccCchhHHHHH
Q 044482 90 ----VVMYNLFPGAKERTMEEF-NALAIGAGFGTIKVICRAYCYW---VI---E--FYKTMHIMDCIYLTMLPMMLNLFN 156 (345)
Q Consensus 90 ----~~~y~~t~~s~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l---~~---~--~~~~~g~~~~~~~~~~~~~~~~f~ 156 (345)
.+.|++|+.++.|.++++ .++++++.+..++..++.|.+| ++ . |+..+|.++|+++.++|+..+.|+
T Consensus 107 ~g~~~~~y~~t~~s~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~g~~~~~~~~~g~~~~~~~~~~~~~~~~f~ 186 (372)
T 1fp1_D 107 DGGAERVYGLSMVGKYLVPDESRGYLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFN 186 (372)
T ss_dssp TSCEEEEEEECTTGGGGSTTCTTCCCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHH
T ss_pred CCCcCCeEecCHHHHHHhCCCCCCCHHHHHHHhcCchHHHHHHHHHHHHHcCCCChhHHHhCCCHHHHHHhCHHHHHHHH
Confidence 359999999988777766 5788888876666667788887 22 1 555667889999999999999999
Q ss_pred HHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCC
Q 044482 157 QSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVP 233 (345)
Q Consensus 157 ~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p 233 (345)
++|...+....+.+++.++.+++..+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|
T Consensus 187 ~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~v~~~~~d~~~~~~ 266 (372)
T 1fp1_D 187 KSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVP 266 (372)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCC
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHHHHhhhhcCCCEEEeCCcccCCC
Confidence 999998887778888888657788899999999999999999999999999999999999887 79999999998777
Q ss_pred CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 234 SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 234 ~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
..|+|+++++||||+|+++.++|++++++|+| ||+++|. |.+.++....+........+|+.|+... ++++||.+
T Consensus 267 ~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~t~~ 341 (372)
T 1fp1_D 267 QGDAMILKAVCHNWSDEKCIEFLSNCHKALSP---NGKVIIV-EFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEK 341 (372)
T ss_dssp CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHH
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhcCC---CCEEEEE-EeccCCCCccchHHHHHHHhhHHHHhcc-CCccCCHH
Confidence 67999999999999999999999999999999 9999999 9988766433211113456788777654 88999999
Q ss_pred HHHHHHHHCCCCceEEEec-CCceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICR-SYCYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k 343 (345)
+|+++|+++||+++++.+. ++..+|||++|
T Consensus 342 e~~~ll~~aGf~~~~~~~~~~~~~~vie~~~ 372 (372)
T 1fp1_D 342 QYEKLSKLSGFSKFQVACRAFNSLGVMEFYK 372 (372)
T ss_dssp HHHHHHHHTTCSEEEEEEEETTTEEEEEEEC
T ss_pred HHHHHHHHCCCceEEEEEcCCCCeEEEEEeC
Confidence 9999999999999999884 44259999986
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=339.68 Aligned_cols=308 Identities=12% Similarity=0.078 Sum_probs=243.9
Q ss_pred CHHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeec
Q 044482 16 DARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNL 95 (345)
Q Consensus 16 ~~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~ 95 (345)
--++..+|..+++++++++|+ |||.|...+| |.|++|||+++++ +++.++|+||+|++.|+|++++++|++
T Consensus 19 l~~l~~g~~~~~~l~~a~~lg-ifd~L~~~~~-~~t~~eLA~~~g~-------~~~~l~rlLr~l~~~g~l~~~~~~y~~ 89 (363)
T 3dp7_A 19 AQEIAFGPVVFQVSRLMLKFG-IFQLLSGKRE-GYTLQEISGRTGL-------TRYAAQVLLEASLTIGTILLEEDRYVL 89 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-HHHHHHTCTT-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEEETTEEEE
T ss_pred HHHHHhhHHHHHHHHHHHHhC-HHHHHHhcCC-CCCHHHHHHHhCc-------CHHHHHHHHHHHhhCCCeEecCCEEec
Confidence 346788999999999999999 9999943233 7999999999999 799999999999999999988779999
Q ss_pred CCCccccccchhhhhhhhhccccchhhhhchHHH---HHH----HhHhcC--cchhhhhccCchhHHH----HHHHHHHh
Q 044482 96 FPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW---VIE----FYKTMH--IMDCIYLTMLPMMLNL----FNQSMQNH 162 (345)
Q Consensus 96 t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g--~~~~~~~~~~~~~~~~----f~~~m~~~ 162 (345)
|+.|+.|.++++.+. ++.+. .+..+++|.+| +++ +...+| .++|+++.++|+..+. |+.+|...
T Consensus 90 t~~s~~L~~~~~~~~--~~~~~-~~~~~~~~~~L~~~lr~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 166 (363)
T 3dp7_A 90 AKAGWFLLNDKMARV--NMEFN-HDVNYQGLFHLEEALLNGRPEGLKVFGEWPTIYEGLSQLPEQVQKSWFGFDHFYSDQ 166 (363)
T ss_dssp CHHHHHHHHCHHHHH--HHHHH-HHTTHHHHTTHHHHHHHSSCGGGGGTCCCSSHHHHGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ccchHHhhCCCcccc--hheee-cHHhhhhHHHHHHHHhcCCCccccccCchHhHHHHHhhCHHHHHHHHHHHHHHhhhh
Confidence 999977766654332 23332 34567888887 333 555667 6899999999987663 56665543
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcC-
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVN- 231 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~- 231 (345)
.. ..+++.+. ..+..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|++++
T Consensus 167 ~~---~~~l~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~ 242 (363)
T 3dp7_A 167 SF---GKALEIVF-SHHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDLPQQLEMMRKQTAGLSGSERIHGHGANLLDRD 242 (363)
T ss_dssp CC---HHHHHHHG-GGCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEECHHHHHHHHHHHTTCTTGGGEEEEECCCCSSS
T ss_pred hH---HHHHHHhc-ccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeCHHHHHHHHHHHHhcCcccceEEEEccccccC
Confidence 21 23444444 4567899999999999999999999999999999999888665 699999999984
Q ss_pred --CCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh-hhhhhccchhhhhhcCCC
Q 044482 232 --VPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI-NRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 232 --~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~ 307 (345)
+|.. |+|+++++||+|+++++.++|++++++|+| ||+|+|. |.+.++....... .......++.|+... ++
T Consensus 243 ~~~p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 317 (363)
T 3dp7_A 243 VPFPTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGK---DSKVYIM-ETLWDRQRYETASYCLTQISLYFTAMANG-NS 317 (363)
T ss_dssp CCCCCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCT---TCEEEEE-ECCTTSCSSHHHHHHHHHHHHHHHHSSCS-SC
T ss_pred CCCCCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCC---CcEEEEE-eeccCCccccchhhHHHHhhhhHHhhhCC-CC
Confidence 6644 999999999999999999999999999999 9999999 9888765432110 011122333344443 67
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEecCC-ceEEEEEEcC
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICRSY-CYWVIEFYKP 344 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~~~-~~~vi~~~k~ 344 (345)
++||.+||+++|++|||+++++.+..+ ..++|+++|.
T Consensus 318 ~~~t~~e~~~ll~~AGf~~v~~~~~~g~~~svi~~~~~ 355 (363)
T 3dp7_A 318 KMFHSDDLIRCIENAGLEVEEIQDNIGLGHSILQCRLK 355 (363)
T ss_dssp CSCCHHHHHHHHHTTTEEESCCCCCBTTTBEEEEEEEC
T ss_pred cccCHHHHHHHHHHcCCeEEEEEeCCCCCceEEEEeec
Confidence 899999999999999999999987654 5899999874
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-43 Score=333.61 Aligned_cols=306 Identities=18% Similarity=0.206 Sum_probs=264.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-eEeeecC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-VVMYNLF 96 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~~~y~~t 96 (345)
++..+|..+++|.++++++ ||+.| .+| +.|++|||+++++ ++..+.|+||+|++.|+|++. ++.|++|
T Consensus 25 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~~--~~t~~ela~~~~~-------~~~~l~r~L~~L~~~g~~~~~~~g~y~~t 93 (360)
T 1tw3_A 25 IRLGSLHTPMVVRTAATLR-LVDHI-LAG--ARTVKALAARTDT-------RPEALLRLIRHLVAIGLLEEDAPGEFVPT 93 (360)
T ss_dssp HHHHCSHHHHHHHHHHHTT-HHHHH-HTT--CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHHHhHHHHHHHHHHHHhC-HHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCEEecCCCeEEeC
Confidence 5667889999999999999 99999 653 6899999999999 799999999999999999885 4599999
Q ss_pred CCccccccchhhhhhhhhccccchh-hhhchHHHH---HH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHH
Q 044482 97 PGAKERTMEEFNALAIGAGFGTIKV-ICRAYCYWV---IE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMK 168 (345)
Q Consensus 97 ~~s~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~l~---~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~ 168 (345)
+.++.+.+++|.++++++.+..++. .+..|..+. ++ |+..+|.++|+++..+|+....|..+|........+
T Consensus 94 ~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~~~~~g~~~~~~~~~~p~~~~~f~~~~~~~~~~~~~ 173 (360)
T 1tw3_A 94 EVGELLADDHPAAQRAWHDLTQAVARADISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFD 173 (360)
T ss_dssp TTGGGGSTTSTTCHHHHTCTTSHHHHHGGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTH
T ss_pred HHHHHHhcCCchhHHHHHHHhcCchhHHHHHHHHHHHHHcCCCHHHHhcCCCHHHHHHhChHHHHHHHHHHHHHHHHhHH
Confidence 9988887777778999888776543 567888772 22 566678899999999999999999999887776677
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~ 237 (345)
.+++.++ +....+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|.+ |+
T Consensus 174 ~l~~~~~-~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~ 252 (360)
T 1tw3_A 174 APAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADA 252 (360)
T ss_dssp HHHHHSC-CTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEE
T ss_pred HHHHhCC-CccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecCHHHHHHHHHHHHhcCCCCceEEEeCCCCCCCCCCccE
Confidence 8888888 8888999999999999999999999999999999988877654 6999999999878865 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC-CCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG-LPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~-~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
|++++++|+|+++++.++|++++++|+| ||+++|. |.+ .++.... .....+|+.|+... +++.++.++|+
T Consensus 253 v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~t~~e~~ 323 (360)
T 1tw3_A 253 IILSFVLLNWPDHDAVRILTRCAEALEP---GGRILIH-ERDDLHENSFN----EQFTELDLRMLVFL-GGALRTREKWD 323 (360)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEE-ECCBCGGGCCS----HHHHHHHHHHHHHH-SCCCCBHHHHH
T ss_pred EEEcccccCCCHHHHHHHHHHHHHhcCC---CcEEEEE-EEeccCCCCCc----chhhhccHHHhhhc-CCcCCCHHHHH
Confidence 9999999999999999999999999999 9999999 988 6544322 12345677887776 89999999999
Q ss_pred HHHHHCCCCceEEEecCCc-----eEEEEEEcC
Q 044482 317 ALAMAAGFGTIKVICRSYC-----YWVIEFYKP 344 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~-----~~vi~~~k~ 344 (345)
++|+++||+++++.+.++. .++|+++|+
T Consensus 324 ~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (360)
T 1tw3_A 324 GLAASAGLVVEEVRQLPSPTIPYDLSLLVLAPA 356 (360)
T ss_dssp HHHHHTTEEEEEEEEEECSSSSCEEEEEEEEEC
T ss_pred HHHHHCCCeEEEEEeCCCCcccCccEEEEEEeC
Confidence 9999999999999888665 899999986
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=329.94 Aligned_cols=303 Identities=11% Similarity=0.074 Sum_probs=251.9
Q ss_pred HHHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecC
Q 044482 17 ARLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLF 96 (345)
Q Consensus 17 ~~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t 96 (345)
-++..+|+.+++|+++++|| |||.| . + +.|++|||+++++ +++.++|+||+|++.|+|++++++|.+|
T Consensus 29 ~~~~~~~~~~~~l~~a~~lg-if~~l-~--~-~~t~~elA~~~~~-------~~~~l~rlLr~L~~~gll~~~~~~y~~t 96 (352)
T 3mcz_A 29 VKLSDQYRQSAILHYAVADK-LFDLT-Q--T-GRTPAEVAASFGM-------VEGKAAILLHALAALGLLTKEGDAFRNT 96 (352)
T ss_dssp HHHHHTHHHHHHHHHHHHTT-HHHHT-T--S-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHCC-hHHHh-C--C-CCCHHHHHHHhCc-------ChHHHHHHHHHHHHCCCeEecCCeeecC
Confidence 34778999999999999999 99999 4 2 7999999999999 7999999999999999999988899999
Q ss_pred CCccc-cccchhhhhhhhhccccchhhhhchHHHHHHHhHhcCcc--hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHh
Q 044482 97 PGAKE-RTMEEFNALAIGAGFGTIKVICRAYCYWVIEFYKTMHIM--DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEI 173 (345)
Q Consensus 97 ~~s~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~--~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~ 173 (345)
+.++. +.+++|.+++.++.+. ...++.|.++...++...... ...++.++|+..+.|..+|...... ...+++.
T Consensus 97 ~~s~~~l~~~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~g~~~~f~~~~~~~~~~~~~~~f~~~m~~~~~~-~~~~l~~ 173 (352)
T 3mcz_A 97 ALTERYLTTTSADYIGPIVEHQ--YLQWDNWPRLGEILRSEKPLAFQQESRFAHDTRARDAFNDAMVRLSQP-MVDVVSE 173 (352)
T ss_dssp HHHHHHHSTTCTTCCHHHHHHH--HTTTTTGGGHHHHHTCSSCCTTSHHHHTTTCHHHHHHHHHHHHHHHHH-HHHHHHT
T ss_pred HHHHhhccCCChhhHHHHHHHh--HHHHHHHHHHHHHHhCCCCCCcccccccccCHHHHHHHHHHHHhhhhh-HHHHHHh
Confidence 99987 7777777788777543 345778888733233221111 1123467899999999999884433 3478888
Q ss_pred ccCccc-ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcC---CCCC-CEE
Q 044482 174 YKGFKE-LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVN---VPSG-QAI 238 (345)
Q Consensus 174 ~~~~~~-~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~---~p~~-D~i 238 (345)
++ +.+ ..+|||||||+|.++..+++++|+++++++|+|++++.++ |++++.+|++++ .|.+ |+|
T Consensus 174 ~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 252 (352)
T 3mcz_A 174 LG-VFARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDLPTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVV 252 (352)
T ss_dssp CG-GGTTCCEEEEETCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEE
T ss_pred CC-CcCCCCEEEEeCCCcCHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEE
Confidence 88 877 8899999999999999999999999999999998877655 699999999984 5555 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
+++++||+|+++++.++|++++++|+| ||+++|. |.+.++....+ .....+|+.|+..+.+++.||.++|+++
T Consensus 253 ~~~~vlh~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~e~~~l 325 (352)
T 3mcz_A 253 MLNDCLHYFDAREAREVIGHAAGLVKP---GGALLIL-TMTMNDDRVTP---ALSADFSLHMMVNTNHGELHPTPWIAGV 325 (352)
T ss_dssp EEESCGGGSCHHHHHHHHHHHHHTEEE---EEEEEEE-EECCCTTSSSS---HHHHHHHHHHHHHSTTCCCCCHHHHHHH
T ss_pred EEecccccCCHHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCCCCCC---chHHHhhHHHHhhCCCCCcCCHHHHHHH
Confidence 999999999999999999999999999 9999999 99887764433 2345678888876557899999999999
Q ss_pred HHHCCCCceEEEecCCceEEEEEEcC
Q 044482 319 AMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
|+++||++++.. .+...+++++||
T Consensus 326 l~~aGf~~~~~~--~g~~~l~~a~kp 349 (352)
T 3mcz_A 326 VRDAGLAVGERS--IGRYTLLIGQRS 349 (352)
T ss_dssp HHHTTCEEEEEE--ETTEEEEEEECC
T ss_pred HHHCCCceeeec--cCceEEEEEecC
Confidence 999999998853 355899999987
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-44 Score=337.85 Aligned_cols=306 Identities=18% Similarity=0.175 Sum_probs=260.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeE-EeE--eee
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTI-DVV--MYN 94 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~-~~~--~y~ 94 (345)
++..+|..+++++++++++ ||+.| .+| +.|++|||+++++ +++.+.|+||+|++.|+|++ .++ .|+
T Consensus 22 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~~--~~t~~eLA~~~g~-------~~~~l~r~Lr~L~~~Gll~~~~~~~~~y~ 90 (374)
T 1qzz_A 22 KNLGNLVTPMALRVAATLR-LVDHL-LAG--ADTLAGLADRTDT-------HPQALSRLVRHLTVVGVLEGGEKQGRPLR 90 (374)
T ss_dssp HTTTCCHHHHHHHHHHHTT-HHHHH-HTT--CCSHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEECCCC-CCCCE
T ss_pred HHHHhhHHHHHHHHHHHcC-hHHHH-hCC--CCCHHHHHHHhCc-------CHHHHHHHHHHHhhCCCEEEeCCCCeEEE
Confidence 3456778899999999999 99999 653 6899999999999 79999999999999999988 455 899
Q ss_pred cCCCccccccchhhhhhhhhccccchhhh-hchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHH
Q 044482 95 LFPGAKERTMEEFNALAIGAGFGTIKVIC-RAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIV 166 (345)
Q Consensus 95 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~ 166 (345)
+|+.++.+.++++.++++++.+..++..+ ..|..+ +++ |...+|.++|+++.++|+....|+.+|.......
T Consensus 91 ~t~~s~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 170 (374)
T 1qzz_A 91 PTRLGMLLADGHPAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLA 170 (374)
T ss_dssp ECTTGGGGSTTCTTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTT
T ss_pred EChHHHhhcCCCcccHHHHHHHcCChhhHHHHHHHHHHHHhcCCChhhhhhCCCHHHHHhhChHHHHHHHHHHHHhhHhH
Confidence 99999878777777899988887655456 778877 333 6666788999999999999999999998877666
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.+.+++.++ +....+|||||||+|.++..+++++|+++++++|+|.+++.++ +++++.+|+++++|.+
T Consensus 171 ~~~~~~~~~-~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 249 (374)
T 1qzz_A 171 YEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTA 249 (374)
T ss_dssp THHHHHTSC-CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCE
T ss_pred HHHHHHhCC-CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeCHHHHHHHHHHHHhcCCCCceEEEeCCCCCcCCCCC
Confidence 678888888 8888999999999999999999999999999999988887665 6999999999878865
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc--CCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR--GLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++++++|+|+++++.++|++++++|+| ||+++|. |. +.++.... .....+|+.|+... +++.++.+
T Consensus 250 D~v~~~~vl~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~ 320 (374)
T 1qzz_A 250 DVVLLSFVLLNWSDEDALTILRGCVRALEP---GGRLLVL-DRADVEGDGADR----FFSTLLDLRMLTFM-GGRVRTRD 320 (374)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-ECCH-------H----HHHHHHHHHHHHHH-SCCCCCHH
T ss_pred CEEEEeccccCCCHHHHHHHHHHHHHhcCC---CcEEEEE-echhhcCCCCCc----chhhhcchHHHHhC-CCcCCCHH
Confidence 999999999999999999999999999999 9999999 88 76554221 23356778887776 89999999
Q ss_pred HHHHHHHHCCCCceEEEecCCce-----EEEEEEcC
Q 044482 314 EFKALAMAAGFGTIKVICRSYCY-----WVIEFYKP 344 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~~~-----~vi~~~k~ 344 (345)
+|+++|+++||+++++...++.. ++|+++|+
T Consensus 321 ~~~~ll~~aGf~~~~~~~~~~~~~~~~~~~i~~~~~ 356 (374)
T 1qzz_A 321 EVVDLAGSAGLALASERTSGSTTLPFDFSILEFTAV 356 (374)
T ss_dssp HHHHHHHTTTEEEEEEEEECCSSCSSCEEEEEEEEC
T ss_pred HHHHHHHHCCCceEEEEECCCCcccCCcEEEEEEEC
Confidence 99999999999999999887766 99999986
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=327.62 Aligned_cols=297 Identities=13% Similarity=0.133 Sum_probs=251.4
Q ss_pred HHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCcc
Q 044482 21 NLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAK 100 (345)
Q Consensus 21 ~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~ 100 (345)
.+|..+++++++++|| ||+.| .+ | +.|++|||+++++ +++.++|+||+|++.|+|+++++.|++|+.+.
T Consensus 40 ~~~~~~~~l~~a~~lg-if~~L-~~-~-~~t~~eLA~~~g~-------~~~~l~rlLr~L~~~gll~~~~~~y~~t~~~~ 108 (359)
T 1x19_A 40 KGLIEFSCMKAAIELD-LFSHM-AE-G-PKDLATLAADTGS-------VPPRLEMLLETLRQMRVINLEDGKWSLTEFAD 108 (359)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHH-TT-C-CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECHHHH
T ss_pred HHHHHHHHHHHHHHcC-cHHHH-cC-C-CCCHHHHHHHhCc-------ChHHHHHHHHHHHhCCCeEeeCCeEecCHHHH
Confidence 4789999999999999 99999 54 3 6899999999999 79999999999999999999888999999866
Q ss_pred c-cccchh---hhhhhhhccccchhhhhchHHHHHHHhHhcCcchhhhhccCch---hHHHHHHHHHHhhH-HHHHHHHH
Q 044482 101 E-RTMEEF---NALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMDCIYLTMLPM---MLNLFNQSMQNHTA-IVMKKILE 172 (345)
Q Consensus 101 ~-l~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~---~~~~f~~~m~~~~~-~~~~~i~~ 172 (345)
. +.++++ .++++++.+. .+..++.|.+|...++. |.+ |+++.++|+ ..+.|..+|...+. ...+.+++
T Consensus 109 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~~~l~~--g~~-~~~~~~~p~~~~~~~~f~~~m~~~~~~~~~~~l~~ 184 (359)
T 1x19_A 109 YMFSPTPKEPNLHQTPVAKAM-AFLADDFYMGLSQAVRG--QKN-FKGQVPYPPVTREDNLYFEEIHRSNAKFAIQLLLE 184 (359)
T ss_dssp HHSSSSCSBTTBCCHHHHHHH-HHHHHHTGGGHHHHHTT--SCC-CCCSSCSSCCSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCCCCccccHHHHHHHH-HHHHHHHHHHHHHHHhc--CCC-CcccccCchhhHHHHHHHHHHHHhccchhHHHHHH
Confidence 5 777766 6788887765 34567788887332332 344 888889999 99999999999887 77788999
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCCCEEEec
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTK 241 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~ 241 (345)
.++ +.+..+|||||||+|.++..+++++|+++++++|+|.+++.++ |++++.+|+++ +++++|+|+++
T Consensus 185 ~~~-~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~v~~~ 263 (359)
T 1x19_A 185 EAK-LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKESYPEADAVLFC 263 (359)
T ss_dssp HCC-CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEECGGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCCCSEEEEE
T ss_pred hcC-CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCCCCEEEEe
Confidence 998 8888999999999999999999999999999999988887664 59999999998 56666999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCcc----CCHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKG----RTAGEFKA 317 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~----rt~~e~~~ 317 (345)
+++|+|+++++.++|++++++|+| ||+++|. |.+.++. ..+. ....+ .|+....++++ ++.++|++
T Consensus 264 ~vlh~~~d~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~-~~~~---~~~~~--~~~~~~~~g~~~~~~~t~~e~~~ 333 (359)
T 1x19_A 264 RILYSANEQLSTIMCKKAFDAMRS---GGRLLIL-DMVIDDP-ENPN---FDYLS--HYILGAGMPFSVLGFKEQARYKE 333 (359)
T ss_dssp SCGGGSCHHHHHHHHHHHHTTCCT---TCEEEEE-EECCCCT-TSCC---HHHHH--HHGGGGGSSCCCCCCCCGGGHHH
T ss_pred chhccCCHHHHHHHHHHHHHhcCC---CCEEEEE-ecccCCC-CCch---HHHHH--HHHHhcCCCCcccCCCCHHHHHH
Confidence 999999999999999999999999 9999999 9887765 2221 11222 34433325777 99999999
Q ss_pred HHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 318 LAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+|+++||+++++.+.+ ..++|+++||
T Consensus 334 ll~~aGf~~v~~~~~~-~~~vi~a~kp 359 (359)
T 1x19_A 334 ILESLGYKDVTMVRKY-DHLLVQAVKP 359 (359)
T ss_dssp HHHHHTCEEEEEEEET-TEEEEEEECC
T ss_pred HHHHCCCceEEEEecC-CceEEEEeCC
Confidence 9999999999999887 7899999986
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=323.37 Aligned_cols=307 Identities=13% Similarity=0.084 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCC
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFP 97 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~ 97 (345)
++..+|..+++++++++|| ||+.| .+ | +.|++|||+++++ +++.+.|+||+|++.|+|+++++.|++|+
T Consensus 12 ~~~~~~~~~~~l~~~~~l~-i~~~l-~~-~-~~t~~ela~~~~~-------~~~~l~r~L~~L~~~g~l~~~~~~y~~t~ 80 (335)
T 2r3s_A 12 NTVNAYQRSAAIKAAVELN-VFTAI-SQ-G-IESSQSLAQKCQT-------SERGMRMLCDYLVIIGFMTKQAEGYRLTS 80 (335)
T ss_dssp HHHTTHHHHHHHHHHHHTT-HHHHH-TT-S-EECHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECH
T ss_pred HHHHHHHHHHHHHHHHHcC-hHHHH-hc-C-CCCHHHHHHHhCC-------CchHHHHHHHHHHhcCCeEecCCEEecCH
Confidence 4667889999999999999 99999 54 3 7999999999999 79999999999999999998777999999
Q ss_pred Ccc-ccccchhhhhhhhhccccchhhhhchHHHHHHHhHhcCcch--hhhhccCchhHHHHHHHHHHhhHHHHHHHHHhc
Q 044482 98 GAK-ERTMEEFNALAIGAGFGTIKVICRAYCYWVIEFYKTMHIMD--CIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIY 174 (345)
Q Consensus 98 ~s~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~~~--~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~ 174 (345)
.++ .+.++++.++++++.+..++..++.|.++...++.. ...+ |+++.++|+..+.|...|..........+++.+
T Consensus 81 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (335)
T 2r3s_A 81 DSAMFLDRQSKFYVGDAIEFLLSPMITNGFNDLTAAVLKG-GTAISSEGTLSPEHPVWVQFAKAMSPMMANPAQLIAQLV 159 (335)
T ss_dssp HHHHHTCTTSTTCCGGGHHHHTCHHHHGGGTTHHHHHHHT-SCCSTTTGGGSTTCTHHHHHHHHSGGGGHHHHHHHHHHH
T ss_pred HHHHHhccCCcHHHHHHHHHhcchhhHHHHHhHHHHHhcC-CCCCCCcccccCCHHHHHHHHHHHHHHHhhhHHHHHHhc
Confidence 995 477777778888888775545678888873323221 1122 788889999999999999988887778888888
Q ss_pred cCc--ccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CEEEe
Q 044482 175 KGF--KELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 175 ~~~--~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
+ + .+..+|||||||+|.++..+++++|+.+++++|++.+++.++ |++++.+|+++ ++|++ |+|++
T Consensus 160 ~-~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~ 238 (335)
T 2r3s_A 160 N-ENKIEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWASVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLL 238 (335)
T ss_dssp T-C--CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEE
T ss_pred c-cccCCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEE
Confidence 8 7 778899999999999999999999999999999998877665 59999999998 66665 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
++++|+|+++++.++|++++++|+| ||+++|. |...++....+ .....+++.|+...++++.++.++|+++++
T Consensus 239 ~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~i~-e~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~ 311 (335)
T 2r3s_A 239 PNFLHHFDVATCEQLLRKIKTALAV---EGKVIVF-DFIPNSDRITP---PDAAAFSLVMLATTPNGDAYTFAEYESMFS 311 (335)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-ECCCCTTSSCS---HHHHHHHHHHHHHSSSCCCCCHHHHHHHHH
T ss_pred cchhccCCHHHHHHHHHHHHHhCCC---CcEEEEE-eecCCCCcCCc---hHHHHHHHHHHeeCCCCCcCCHHHHHHHHH
Confidence 9999999999999999999999999 9999999 98877653322 234567777877655789999999999999
Q ss_pred HCCCCceEEEecCCceEEEEEEcC
Q 044482 321 AAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 321 ~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++||+++++.+.++..++|++++|
T Consensus 312 ~aGf~~~~~~~~~~~~~~i~~~~~ 335 (335)
T 2r3s_A 312 NAGFSHSQLHSLPTTQQQVIVAYK 335 (335)
T ss_dssp HTTCSEEEEECCTTSSSEEEEEEC
T ss_pred HCCCCeeeEEECCCCceeEEEecC
Confidence 999999999998877788888764
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6e-21 Score=171.40 Aligned_cols=163 Identities=17% Similarity=0.155 Sum_probs=122.9
Q ss_pred ccccceEEecCCccHHHHHHHHHC--CCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTY--PQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~--p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
++..+|||||||+|.++..+++++ |+++++++|+ |.|++.|+ +++++.+|+.+ ++++.|+|++..+
T Consensus 69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~~~~d~v~~~~~ 148 (261)
T 4gek_A 69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLNFT 148 (261)
T ss_dssp CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccccccccceeeee
Confidence 456899999999999999999985 6789999999 88988765 68999999987 5555699999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh-------------hhcCCCccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY-------------DLFPQAKGR 310 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~-------------~~~~~~~~r 310 (345)
||++++++...+|++++++|+| ||++++. |.+..++...... ......++... ....--...
T Consensus 149 l~~~~~~~~~~~l~~i~~~Lkp---GG~lii~-e~~~~~~~~~~~~-~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~ 223 (261)
T 4gek_A 149 LQFLEPSERQALLDKIYQGLNP---GGALVLS-EKFSFEDAKVGEL-LFNMHHDFKRANGYSELEISQKRSMLENVMLTD 223 (261)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCB
T ss_pred eeecCchhHhHHHHHHHHHcCC---CcEEEEE-eccCCCCHHHHHH-HHHHHHHHHHHcCCCHHHHHHHHhhhcccccCC
Confidence 9999999888999999999999 9999999 8876654321100 00000010000 000001246
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
|.+++.++|++|||+.++++........+.|+|++
T Consensus 224 s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~ 258 (261)
T 4gek_A 224 SVETHKARLHKAGFEHSELWFQCFNFGSLVALKAE 258 (261)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCT
T ss_pred CHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcC
Confidence 88999999999999999886555556667888873
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-19 Score=158.91 Aligned_cols=173 Identities=17% Similarity=0.155 Sum_probs=129.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC-CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-D~ 237 (345)
..+++.+.......+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 33 ~~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 112 (234)
T 3dtn_A 33 GVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYDFEEKYDM 112 (234)
T ss_dssp HHHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCCCCSCEEE
T ss_pred HHHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccCCCCCceE
Confidence 34445444233557999999999999999999999999999999 88877665 68999999988 55544 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh---hhhh----ccchh----hhhhcCC
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN---RNIL----TLDIV----MYDLFPQ 306 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~---~~~~----~~d~~----~~~~~~~ 306 (345)
|++..++|++++++...+|+++++.|+| ||++++. +...++........ +... .+... .+.....
T Consensus 113 v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 188 (234)
T 3dtn_A 113 VVSALSIHHLEDEDKKELYKRSYSILKE---SGIFINA-DLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKL 188 (234)
T ss_dssp EEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----C
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCC---CcEEEEE-EecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhccc
Confidence 9999999999999888899999999999 9999999 87765432110000 0000 00000 0000012
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
...++.+++.++|++|||+++++.......+++...|+
T Consensus 189 ~~~~~~~~~~~ll~~aGF~~v~~~~~~~~~~~~~~~~~ 226 (234)
T 3dtn_A 189 DKDIEMNQQLNWLKEAGFRDVSCIYKYYQFAVMFGRKT 226 (234)
T ss_dssp CCCCBHHHHHHHHHHTTCEEEEEEEEETTEEEEEEECC
T ss_pred ccccCHHHHHHHHHHcCCCceeeeeeecceeEEEEEec
Confidence 34578999999999999999999888888888888876
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.8e-18 Score=147.38 Aligned_cols=153 Identities=15% Similarity=0.111 Sum_probs=125.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
..+++.++ .....+|||||||+|.++..+++.. |..+++++|+ +.+++.++ +++++.+|+.+ +++++
T Consensus 27 ~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~ 105 (219)
T 3dh0_A 27 EKVLKEFG-LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDN 105 (219)
T ss_dssp HHHHHHHT-CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSS
T ss_pred HHHHHHhC-CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCC
Confidence 34566666 6677899999999999999999997 8889999999 88877665 58999999987 66654
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++..++|++++. ..+|+++++.|+| ||++++. +.........+. ....++.+
T Consensus 106 ~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~-----------------~~~~~~~~ 162 (219)
T 3dh0_A 106 TVDFIFMAFTFHELSEP--LKFLEELKRVAKP---FAYLAII-DWKKEERDKGPP-----------------PEEVYSEW 162 (219)
T ss_dssp CEEEEEEESCGGGCSSH--HHHHHHHHHHEEE---EEEEEEE-EECSSCCSSSCC-----------------GGGSCCHH
T ss_pred CeeEEEeehhhhhcCCH--HHHHHHHHHHhCC---CeEEEEE-EecccccccCCc-----------------hhcccCHH
Confidence 999999999999876 5899999999999 9999999 765543321110 11235799
Q ss_pred HHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 314 EFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+|.++++++||+++++.........+.++|+
T Consensus 163 ~~~~~l~~~Gf~~~~~~~~~~~~~~~~~~k~ 193 (219)
T 3dh0_A 163 EVGLILEDAGIRVGRVVEVGKYCFGVYAMIV 193 (219)
T ss_dssp HHHHHHHHTTCEEEEEEEETTTEEEEEEECC
T ss_pred HHHHHHHHCCCEEEEEEeeCCceEEEEEEec
Confidence 9999999999999999888877888888876
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.76 E-value=9.5e-19 Score=151.84 Aligned_cols=165 Identities=15% Similarity=0.211 Sum_probs=118.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .... +|||||||+|.++..++++ |+.+++++|+ +.+++.++ +++++.+|+.+ +++.
T Consensus 33 ~~~~~~~~~-~~~~-~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 109 (219)
T 3dlc_A 33 AENIINRFG-ITAG-TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIED 109 (219)
T ss_dssp HHHHHHHHC-CCEE-EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCT
T ss_pred HHHHHHhcC-CCCC-EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCc
Confidence 345556555 4444 9999999999999999998 8889999999 78877665 58999999988 7764
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-hccchhhhhhcCCCccCC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-LTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~rt 311 (345)
+ |+|++.+++||+++. ..+|+++++.|+| ||++++. +...+............ ....+...... ....++
T Consensus 110 ~~~D~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 182 (219)
T 3dlc_A 110 NYADLIVSRGSVFFWEDV--ATAFREIYRILKS---GGKTYIG-GGFGNKELRDSISAEMIRKNPDWKEFNRK-NISQEN 182 (219)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-ECCSSHHHHHHHHHHHHHHCTTHHHHHHH-HSSHHH
T ss_pred ccccEEEECchHhhccCH--HHHHHHHHHhCCC---CCEEEEE-eccCcHHHHHHHHHHHHHhHHHHHhhhhh-ccccCC
Confidence 4 999999999999765 5799999999999 9999998 75543211000000000 00001111101 234457
Q ss_pred HHHHHHHHHHCCCCceEEEecCCceEEEEE
Q 044482 312 AGEFKALAMAAGFGTIKVICRSYCYWVIEF 341 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~ 341 (345)
.++|.++|+++||+++++........++..
T Consensus 183 ~~~~~~~l~~aGf~~v~~~~~~~~~~~~~~ 212 (219)
T 3dlc_A 183 VERFQNVLDEIGISSYEIILGDEGFWIIIS 212 (219)
T ss_dssp HHHHHHHHHHHTCSSEEEEEETTEEEEEEB
T ss_pred HHHHHHHHHHcCCCeEEEEecCCceEEEEe
Confidence 899999999999999999877765554443
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=150.95 Aligned_cols=191 Identities=13% Similarity=0.086 Sum_probs=127.3
Q ss_pred hhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---
Q 044482 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--- 219 (345)
Q Consensus 144 ~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--- 219 (345)
|....|...+.+...+........+.+.+.++ ...+|||||||+|.++..++++.| +++++|+ |.+++.++
T Consensus 6 ~y~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~ 80 (227)
T 1ve3_A 6 YYRVFPTYTDINSQEYRSRIETLEPLLMKYMK---KRGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYA 80 (227)
T ss_dssp HHHHCSTTTCTTSHHHHHHHHHHHHHHHHSCC---SCCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHH
T ss_pred HHHHhhhhhcccHHHHHHHHHHHHHHHHHhcC---CCCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHH
Confidence 33334443333333444333444444555544 367999999999999999999987 8999998 88877665
Q ss_pred -----CceEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch---
Q 044482 220 -----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS--- 288 (345)
Q Consensus 220 -----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~--- 288 (345)
+++++.+|+.+ +++.+ |+|++..++|++..++..++|+++++.|+| ||++++. +...+.......
T Consensus 81 ~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~~~~~ 156 (227)
T 1ve3_A 81 KSRESNVEFIVGDARKLSFEDKTFDYVIFIDSIVHFEPLELNQVFKEVRRVLKP---SGKFIMY-FTDLRELLPRLKESL 156 (227)
T ss_dssp HHTTCCCEEEECCTTSCCSCTTCEEEEEEESCGGGCCHHHHHHHHHHHHHHEEE---EEEEEEE-EECHHHHGGGCCC--
T ss_pred HhcCCCceEEECchhcCCCCCCcEEEEEEcCchHhCCHHHHHHHHHHHHHHcCC---CcEEEEE-ecChHHHHHHHHhhh
Confidence 68999999988 66643 999999998888888888999999999999 9999998 654221100000
Q ss_pred ----hhhhhhc-cchh----hhhhcCC-------CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 289 ----INRNILT-LDIV----MYDLFPQ-------AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 289 ----~~~~~~~-~d~~----~~~~~~~-------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
..+.... .+.. .+....+ ....+ .+|.++|+++||+.+++..+....++|+..|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~-~~~~~~l~~~GF~~v~~~~~~~~~~~i~~~~~ 227 (227)
T 1ve3_A 157 VVGQKYWISKVIPDQEERTVVIEFKSEQDSFRVRFNVWG-KTGVELLAKLYFTKEAEEKVGNYSYLTVYNPK 227 (227)
T ss_dssp -------CCEEEEETTTTEEEEEC-----CCEEEEECCC-HHHHHHHHTTTEEEEEEEEETTTEEEEEEEEC
T ss_pred hcccceeecccccCccccEEEEEeccchhhheeehhhhc-hHHHHHHHHHhhhHHHHHHhCCceeEEeeCCC
Confidence 0000000 0000 0000000 01112 48999999999999999998777789988874
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.3e-18 Score=152.63 Aligned_cols=161 Identities=13% Similarity=0.058 Sum_probs=118.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEecc-ccccCCh-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFTKS-VLLNWSD- 249 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~~~-vlh~~~d- 249 (345)
...+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++.. ++||+++
T Consensus 50 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~~~~~ 127 (263)
T 3pfg_A 50 KAASLLDVACGTGMHLRHLADSFG--TVEGLELSADMLAIARRRNPDAVLHHGDMRDFSLGRRFSAVTCMFSSIGHLAGQ 127 (263)
T ss_dssp TCCEEEEETCTTSHHHHHHTTTSS--EEEEEESCHHHHHHHHHHCTTSEEEECCTTTCCCSCCEEEEEECTTGGGGSCHH
T ss_pred CCCcEEEeCCcCCHHHHHHHHcCC--eEEEEECCHHHHHHHHhhCCCCEEEECChHHCCccCCcCEEEEcCchhhhcCCH
Confidence 457999999999999999998854 7999999 88888776 79999999988 55444 9999998 9999975
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh--------------------hhhccchhhhhhcCC---
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR--------------------NILTLDIVMYDLFPQ--- 306 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~--------------------~~~~~d~~~~~~~~~--- 306 (345)
++..++|+++++.|+| ||+++|. +...++.-.+..... ....+++.+.....+
T Consensus 128 ~~~~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (263)
T 3pfg_A 128 AELDAALERFAAHVLP---DGVVVVE-PWWFPENFTPGYVAAGTVEAGGTTVTRVSHSSREGEATRIEVHYLVAGPDRGI 203 (263)
T ss_dssp HHHHHHHHHHHHTEEE---EEEEEEC-CCCCTTTCCTTEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-eccChhhccccccccceeccCCceeEEEEEEEecCcEEEEEEEEEEecCCCcE
Confidence 5677899999999999 9999887 665544321100000 000111111111111
Q ss_pred --------CccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcCC
Q 044482 307 --------AKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKPK 345 (345)
Q Consensus 307 --------~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~~ 345 (345)
.+.+|.++|+++|++|||+++++........+++++|++
T Consensus 204 ~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~~~~~va~K~a 250 (263)
T 3pfg_A 204 THHEESHRITLFTREQYERAFTAAGLSVEFMPGGPSGRGLFTGLPGA 250 (263)
T ss_dssp EEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEECC
T ss_pred EEEEEEEEEEeecHHHHHHHHHHCCCEEEEeeCCCCCceeEEEecCC
Confidence 234689999999999999999987776778889999873
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=143.81 Aligned_cols=165 Identities=15% Similarity=0.142 Sum_probs=119.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCCC-CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
.+++.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++
T Consensus 36 ~~l~~~~-~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 112 (220)
T 3hnr_A 36 DILEDVV-NKSFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKLPKEFSITEGDFLSFEVPTSIDTIVS 112 (220)
T ss_dssp HHHHHHH-HTCCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHSCTTCCEESCCSSSCCCCSCCSEEEE
T ss_pred HHHHHhh-ccCCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhCCCceEEEeCChhhcCCCCCeEEEEE
Confidence 3444444 445679999999999999999987 568999999 77877665 68999999988 55533 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc--chh--hhhhcCCCccCCHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL--DIV--MYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~--d~~--~~~~~~~~~~rt~~e~~ 316 (345)
.+++|++++++...+|+++++.|+| ||++++. +...+...... ....... ... ..... ....++.++|+
T Consensus 113 ~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 185 (220)
T 3hnr_A 113 TYAFHHLTDDEKNVAIAKYSQLLNK---GGKIVFA-DTIFADQDAYD--KTVEAAKQRGFHQLANDLQ-TEYYTRIPVMQ 185 (220)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHSCT---TCEEEEE-EECBSSHHHHH--HHHHHHHHTTCHHHHHHHH-HSCCCBHHHHH
T ss_pred CcchhcCChHHHHHHHHHHHHhcCC---CCEEEEE-eccccChHHHH--HHHHHHHhCCCccchhhcc-hhhcCCHHHHH
Confidence 9999999999877899999999999 9999999 76543321100 0000000 000 00000 11334889999
Q ss_pred HHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 317 ALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
++|+++||+++.+.. .....++.+.|+
T Consensus 186 ~~l~~aGf~v~~~~~-~~~~w~~~~~~~ 212 (220)
T 3hnr_A 186 TIFENNGFHVTFTRL-NHFVWVMEATKQ 212 (220)
T ss_dssp HHHHHTTEEEEEEEC-SSSEEEEEEEEC
T ss_pred HHHHHCCCEEEEeec-cceEEEEeehhh
Confidence 999999998766654 456888888875
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=141.85 Aligned_cols=157 Identities=17% Similarity=0.061 Sum_probs=111.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCcCCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFVNVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~~~p~~--D~i~~ 240 (345)
.+++.+.......+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+..+.+ |+|++
T Consensus 36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~d~~~~~~~~~~D~v~~ 113 (218)
T 3ou2_A 36 AALERLRAGNIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRHGLDNVEFRQQDLFDWTPDRQWDAVFF 113 (218)
T ss_dssp HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGGCCTTEEEEECCTTSCCCSSCEEEEEE
T ss_pred HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhcCCCCeEEEecccccCCCCCceeEEEE
Confidence 44454443455679999999999999999998 568999998 88887765 7999999998865543 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCC------CccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQ------AKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~------~~~rt~~e 314 (345)
.+++||+++++...+|+++++.|+| ||++++. +...+......... ........-....+ ....+.++
T Consensus 114 ~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (218)
T 3ou2_A 114 AHWLAHVPDDRFEAFWESVRSAVAP---GGVVEFV-DVTDHERRLEQQDD--SEPEVAVRRTLQDGRSFRIVKVFRSPAE 187 (218)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECCCC--------------CEEEEECTTSCEEEEECCCCCHHH
T ss_pred echhhcCCHHHHHHHHHHHHHHcCC---CeEEEEE-eCCCCccccchhhh--cccccceeeecCCcchhhHhhcCCCHHH
Confidence 9999999998888999999999999 9999999 76543221100000 00000000000001 12358999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
|.++++++||++......+
T Consensus 188 ~~~~l~~aGf~v~~~~~~~ 206 (218)
T 3ou2_A 188 LTERLTALGWSCSVDEVHP 206 (218)
T ss_dssp HHHHHHHTTEEEEEEEEET
T ss_pred HHHHHHHCCCEEEeeeccc
Confidence 9999999999955444433
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-17 Score=145.51 Aligned_cols=154 Identities=12% Similarity=0.092 Sum_probs=119.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 50 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~ 127 (273)
T 3bus_A 50 TDEMIALLD-VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFED 127 (273)
T ss_dssp HHHHHHHSC-CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCT
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCC
Confidence 456677776 6777899999999999999999987 679999999 77776554 59999999988 6664
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
+ |+|++..++||+++. ..+|+++++.|+| ||++++. +.......... .....+...... +.+..++.
T Consensus 128 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~ 196 (273)
T 3bus_A 128 ASFDAVWALESLHHMPDR--GRALREMARVLRP---GGTVAIA-DFVLLAPVEGA----KKEAVDAFRAGG-GVLSLGGI 196 (273)
T ss_dssp TCEEEEEEESCTTTSSCH--HHHHHHHHTTEEE---EEEEEEE-EEEESSCCCHH----HHHHHHHHHHHH-TCCCCCCH
T ss_pred CCccEEEEechhhhCCCH--HHHHHHHHHHcCC---CeEEEEE-EeeccCCCChh----HHHHHHHHHhhc-CccCCCCH
Confidence 4 999999999999876 5889999999999 9999999 87654332111 011112111122 25667899
Q ss_pred HHHHHHHHHCCCCceEEEecC
Q 044482 313 GEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~ 333 (345)
++|.++++++||+++++...+
T Consensus 197 ~~~~~~l~~aGf~~~~~~~~~ 217 (273)
T 3bus_A 197 DEYESDVRQAELVVTSTVDIS 217 (273)
T ss_dssp HHHHHHHHHTTCEEEEEEECH
T ss_pred HHHHHHHHHcCCeEEEEEECc
Confidence 999999999999998887653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.4e-17 Score=142.93 Aligned_cols=161 Identities=16% Similarity=0.097 Sum_probs=116.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEe-ccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFT-KSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~-~~vlh~~~d 249 (345)
....+|||||||+|.++..++++++ +++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++ ..++||+++
T Consensus 39 ~~~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~~~~~ 116 (239)
T 3bxo_A 39 PEASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKRLPDATLHQGDMRDFRLGRKFSAVVSMFSSVGYLKT 116 (239)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHHCTTCEEEECCTTTCCCSSCEEEEEECTTGGGGCCS
T ss_pred CCCCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhCCCCEEEECCHHHcccCCCCcEEEEcCchHhhcCC
Confidence 3457999999999999999999986 7999999 88888776 79999999987 44444 99995 559999864
Q ss_pred -hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh-hh-------------------hhhccchhhhhhcCCC-
Q 044482 250 -EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI-NR-------------------NILTLDIVMYDLFPQA- 307 (345)
Q Consensus 250 -~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~-~~-------------------~~~~~d~~~~~~~~~~- 307 (345)
++...+|+++++.|+| ||++++. +...++...+... .+ .....++.++....++
T Consensus 117 ~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (239)
T 3bxo_A 117 TEELGAAVASFAEHLEP---GGVVVVE-PWWFPETFADGWVSADVVRRDGRTVARVSHSVREGNATRMEVHFTVADPGKG 192 (239)
T ss_dssp HHHHHHHHHHHHHTEEE---EEEEEEC-CCCCTTTCCTTCEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEEEEETTTE
T ss_pred HHHHHHHHHHHHHhcCC---CeEEEEE-eccCcccccccceEeeEEecCCceEEEEEEEecCCCEEEEEEEEEEecCCCc
Confidence 6778999999999999 9999888 7665543211000 00 0000111111111111
Q ss_pred ----------ccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 308 ----------KGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 308 ----------~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+.+|.++|+++|+++||+++.+....+...+++++|+
T Consensus 193 ~~~~~~~~~~~~~t~~~~~~ll~~aGF~v~~~~~~~~~~~~~va~K~ 239 (239)
T 3bxo_A 193 VRHFSDVHLITLFHQAEYEAAFTAAGLRVEYLEGGPSGRGLFVGVPA 239 (239)
T ss_dssp EEEEEEEEEEECCCHHHHHHHHHHTTEEEEEESSTTTSSCEEEEEEC
T ss_pred ceEEEEEEEeeecCHHHHHHHHHHCCCEEEEeEcCCCCceEEEEecC
Confidence 3468999999999999977666555566789999886
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=4.9e-17 Score=145.46 Aligned_cols=153 Identities=20% Similarity=0.251 Sum_probs=119.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 44 ~~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 121 (266)
T 3ujc_A 44 TKKILSDIE-LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEFPENNF 121 (266)
T ss_dssp HHHHTTTCC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCCCCTTCE
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCCCCCCcE
Confidence 345667666 6777899999999999999999987 679999999 77777654 68999999988 66644
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++.+++||+++++...+|+++++.|+| ||++++. +...+.... .. ..+.- ..... +...++.++|
T Consensus 122 D~v~~~~~l~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~----~~~~~-~~~~~-~~~~~~~~~~ 189 (266)
T 3ujc_A 122 DLIYSRDAILALSLENKNKLFQKCYKWLKP---TGTLLIT-DYCATEKEN--WD----DEFKE-YVKQR-KYTLITVEEY 189 (266)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEESCGGG--CC----HHHHH-HHHHH-TCCCCCHHHH
T ss_pred EEEeHHHHHHhcChHHHHHHHHHHHHHcCC---CCEEEEE-EeccCCccc--ch----HHHHH-HHhcC-CCCCCCHHHH
Confidence 999999999999888889999999999999 9999999 876544111 00 01111 11111 4456789999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||+++++....
T Consensus 190 ~~~l~~~Gf~~~~~~~~~ 207 (266)
T 3ujc_A 190 ADILTACNFKNVVSKDLS 207 (266)
T ss_dssp HHHHHHTTCEEEEEEECH
T ss_pred HHHHHHcCCeEEEEEeCC
Confidence 999999999999887653
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.3e-17 Score=140.24 Aligned_cols=145 Identities=12% Similarity=-0.002 Sum_probs=114.7
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.+++||+++++
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~~ 119 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQTHPSVTFHHGTITDLSDSPKRWAGLLAWYSLIHMGPGE 119 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHHCTTSEEECCCGGGGGGSCCCEEEEEEESSSTTCCTTT
T ss_pred CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHhCCCCeEEeCcccccccCCCCeEEEEehhhHhcCCHHH
Confidence 579999999999999999988 458999999 88888776 89999999988 66644 9999999999999777
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
...+|+++++.|+| ||++++. +...+... . . .. ... ....++.++|.++|+++||+++++..
T Consensus 120 ~~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~--~----~---~~----~~~-~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 120 LPDALVALRMAVED---GGGLLMS-FFSGPSLE--P----M---YH----PVA-TAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp HHHHHHHHHHTEEE---EEEEEEE-EECCSSCE--E----E---CC----SSS-CEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHHHHHcCC---CcEEEEE-EccCCchh--h----h---hc----hhh-hhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 88999999999999 9999998 65433210 0 0 00 011 23457899999999999999999987
Q ss_pred cCC-ceEEEEEEcC
Q 044482 332 RSY-CYWVIEFYKP 344 (345)
Q Consensus 332 ~~~-~~~vi~~~k~ 344 (345)
.+. ++..+...|+
T Consensus 182 ~~~~p~~~l~~~~~ 195 (203)
T 3h2b_A 182 DPRFPHAYLTAEAS 195 (203)
T ss_dssp CTTSSEEEEEEEEC
T ss_pred cCCCcchhhhhhhh
Confidence 754 5566655543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.71 E-value=2.9e-17 Score=146.97 Aligned_cols=152 Identities=19% Similarity=0.257 Sum_probs=115.1
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~ 234 (345)
....+++.++ .....+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 25 ~~~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~ 101 (260)
T 1vl5_A 25 DLAKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTD 101 (260)
T ss_dssp CHHHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCT
T ss_pred HHHHHHHHhC-CCCCCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCC
Confidence 3455666666 66778999999999999999999876 8999998 88887654 58999999988 7774
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRT 311 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt 311 (345)
+ |+|++..++||++|. ..+|++++++|+| ||++++. +...+..+ .. ...+........ .....++
T Consensus 102 ~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~ 169 (260)
T 1vl5_A 102 ERFHIVTCRIAAHHFPNP--ASFVSEAYRVLKK---GGQLLLV-DNSAPEND---AF---DVFYNYVEKERDYSHHRAWK 169 (260)
T ss_dssp TCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEBCSSH---HH---HHHHHHHHHHHCTTCCCCCB
T ss_pred CCEEEEEEhhhhHhcCCH--HHHHHHHHHHcCC---CCEEEEE-EcCCCCCH---HH---HHHHHHHHHhcCccccCCCC
Confidence 4 999999999999987 4889999999999 9999998 77654331 11 111111111111 1235678
Q ss_pred HHHHHHHHHHCCCCceEEEec
Q 044482 312 AGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.++|.++|+++||+++++...
T Consensus 170 ~~~~~~~l~~aGf~~~~~~~~ 190 (260)
T 1vl5_A 170 KSDWLKMLEEAGFELEELHCF 190 (260)
T ss_dssp HHHHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHHHCCCeEEEEEEe
Confidence 999999999999998877654
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.7e-17 Score=142.17 Aligned_cols=149 Identities=15% Similarity=0.227 Sum_probs=113.5
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-CceEEeccCCc---CCCCC--CEEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVEHVEGDMFV---NVPSG--QAIFT 240 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~~~~gd~~~---~~p~~--D~i~~ 240 (345)
..+.+.++.+....+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++
T Consensus 30 ~~~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~d~~~~~~~~~~~~fD~i~~ 107 (240)
T 3dli_A 30 ARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEGKFNVVKSDAIEYLKSLPDKYLDGVMI 107 (240)
T ss_dssp HHHGGGGGGTTTCSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHTTSEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred HHHHHHHhhhcCCCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHhhcceeeccHHHHhhhcCCCCeeEEEE
Confidence 334444443455689999999999999999998 457899999 88888887 79999999877 55644 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
.+++||+++++...+|+++++.|+| ||++++. ..... . .. ...+. ..... ....++.+++.++++
T Consensus 108 ~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~----~-~~----~~~~~-~~~~~-~~~~~~~~~l~~~l~ 172 (240)
T 3dli_A 108 SHFVEHLDPERLFELLSLCYSKMKY---SSYIVIE-SPNPT----S-LY----SLINF-YIDPT-HKKPVHPETLKFILE 172 (240)
T ss_dssp ESCGGGSCGGGHHHHHHHHHHHBCT---TCCEEEE-EECTT----S-HH----HHHHH-TTSTT-CCSCCCHHHHHHHHH
T ss_pred CCchhhCCcHHHHHHHHHHHHHcCC---CcEEEEE-eCCcc----h-hH----HHHHH-hcCcc-ccccCCHHHHHHHHH
Confidence 9999999988888999999999999 9999988 54311 1 11 11111 11111 345678999999999
Q ss_pred HCCCCceEEEecC
Q 044482 321 AAGFGTIKVICRS 333 (345)
Q Consensus 321 ~aGf~~~~~~~~~ 333 (345)
++||+++++....
T Consensus 173 ~aGf~~~~~~~~~ 185 (240)
T 3dli_A 173 YLGFRDVKIEFFE 185 (240)
T ss_dssp HHTCEEEEEEEEC
T ss_pred HCCCeEEEEEEec
Confidence 9999998887654
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-16 Score=145.78 Aligned_cols=151 Identities=17% Similarity=0.248 Sum_probs=116.0
Q ss_pred HHHHHHHhc----cCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc
Q 044482 166 VMKKILEIY----KGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV 230 (345)
Q Consensus 166 ~~~~i~~~~----~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~ 230 (345)
....+++.+ + .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+
T Consensus 66 ~~~~l~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~ 143 (297)
T 2o57_A 66 TDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLE 143 (297)
T ss_dssp HHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTS
T ss_pred HHHHHHHHhhhccC-CCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCccc
Confidence 344566666 4 6677899999999999999999987 468999999 77777654 68999999988
Q ss_pred -CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 231 -NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 231 -~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
+++++ |+|++..++||+++. ..+|++++++|+| ||++++. +...+....... ....++ ... ..
T Consensus 144 ~~~~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~---~~~~~~----~~~-~~ 209 (297)
T 2o57_A 144 IPCEDNSYDFIWSQDAFLHSPDK--LKVFQECARVLKP---RGVMAIT-DPMKEDGIDKSS---IQPILD----RIK-LH 209 (297)
T ss_dssp CSSCTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEECTTCCGGG---GHHHHH----HHT-CS
T ss_pred CCCCCCCEeEEEecchhhhcCCH--HHHHHHHHHHcCC---CeEEEEE-EeccCCCCchHH---HHHHHH----Hhc-CC
Confidence 76654 999999999999984 6899999999999 9999999 876554322110 111111 111 22
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEec
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...+.++|.++++++||+++++...
T Consensus 210 ~~~~~~~~~~~l~~aGf~~~~~~~~ 234 (297)
T 2o57_A 210 DMGSLGLYRSLAKECGLVTLRTFSR 234 (297)
T ss_dssp SCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred CCCCHHHHHHHHHHCCCeEEEEEEC
Confidence 3468999999999999999988765
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=145.19 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=107.4
Q ss_pred cccceEEecCCc---cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC------------CC-C
Q 044482 179 ELKKLVDVASCL---GANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN------------VP-S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~---G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~------------~p-~ 234 (345)
+..+|||||||+ |.++..+.+.+|+.+++++|+ |.|++.++ +++++.+|+.++ ++ .
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 447999999999 999888888999999999999 89988765 799999999762 23 2
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
. |+|++..+||++++++...+|++++++|+| ||+|++. +...+. +.. .....+....... ....|+.+
T Consensus 157 ~~d~v~~~~vlh~~~d~~~~~~l~~~~~~L~p---GG~l~i~-~~~~~~---~~~---~~~~~~~~~~~~~-~~~~~s~~ 225 (274)
T 2qe6_A 157 RPAAIMLVGMLHYLSPDVVDRVVGAYRDALAP---GSYLFMT-SLVDTG---LPA---QQKLARITRENLG-EGWARTPE 225 (274)
T ss_dssp SCCEEEETTTGGGSCTTTHHHHHHHHHHHSCT---TCEEEEE-EEBCSS---CHH---HHHHHHHHHHHHS-CCCCBCHH
T ss_pred CCEEEEEechhhhCCcHHHHHHHHHHHHhCCC---CcEEEEE-EecCcc---hHH---HHHHHHHHHhcCC-CCccCCHH
Confidence 3 999999999999998888999999999999 9999999 765432 111 1112232222222 45679999
Q ss_pred HHHHHHHHCCCCceE
Q 044482 314 EFKALAMAAGFGTIK 328 (345)
Q Consensus 314 e~~~ll~~aGf~~~~ 328 (345)
|++++| +||++++
T Consensus 226 ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 226 EIERQF--GDFELVE 238 (274)
T ss_dssp HHHHTT--TTCEECT
T ss_pred HHHHHh--CCCeEcc
Confidence 999999 5997765
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-16 Score=145.78 Aligned_cols=163 Identities=9% Similarity=0.021 Sum_probs=121.3
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------Cce
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVE 222 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~ 222 (345)
.|.+ +..........+++.++......+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++
T Consensus 93 ~f~~-~~~~~~~~~~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~ 170 (312)
T 3vc1_A 93 VIAE-LHRLESAQAEFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRARELRIDDHVR 170 (312)
T ss_dssp HHHH-HHHHHHHHHHHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEE
T ss_pred HHhh-hhhHHHHHHHHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCceE
Confidence 3443 4444444455667766545667899999999999999999986 578999999 88877665 599
Q ss_pred EEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 223 HVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 223 ~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
++.+|+.+ +++.+ |+|++..++|+++ ...+|+++++.|+| ||++++. +....+...... ...+..
T Consensus 171 ~~~~d~~~~~~~~~~fD~V~~~~~l~~~~---~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~-----~~~~~~ 238 (312)
T 3vc1_A 171 SRVCNMLDTPFDKGAVTASWNNESTMYVD---LHDLFSEHSRFLKV---GGRYVTI-TGCWNPRYGQPS-----KWVSQI 238 (312)
T ss_dssp EEECCTTSCCCCTTCEEEEEEESCGGGSC---HHHHHHHHHHHEEE---EEEEEEE-EEEECTTTCSCC-----HHHHHH
T ss_pred EEECChhcCCCCCCCEeEEEECCchhhCC---HHHHHHHHHHHcCC---CcEEEEE-Eccccccccchh-----HHHHHH
Confidence 99999988 66643 9999999999994 56899999999999 9999999 766554321111 011111
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.... ....++.++|.++++++||+++++...
T Consensus 239 ~~~~--~~~~~s~~~~~~~l~~aGf~~~~~~~~ 269 (312)
T 3vc1_A 239 NAHF--ECNIHSRREYLRAMADNRLVPHTIVDL 269 (312)
T ss_dssp HHHH--TCCCCBHHHHHHHHHTTTEEEEEEEEC
T ss_pred Hhhh--cCCCCCHHHHHHHHHHCCCEEEEEEeC
Confidence 1111 123678999999999999999988765
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=143.79 Aligned_cols=147 Identities=14% Similarity=0.189 Sum_probs=116.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++.++ .....+|||||||+|.++..++++. ..+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 82 ~~~~l~~l~-~~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~~f 159 (254)
T 1xtp_A 82 SRNFIASLP-GHGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTY 159 (254)
T ss_dssp HHHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCE
T ss_pred HHHHHHhhc-ccCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCCCCCCCe
Confidence 345666665 5567899999999999999999887 457999998 78877665 58999999987 66543
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++.+++||+++++...+|+++++.|+| ||++++. +....... ...+. . .....++.++|
T Consensus 160 D~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~---------~~~~~----~-~~~~~~~~~~~ 221 (254)
T 1xtp_A 160 DLIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFK-ENCSTGDR---------FLVDK----E-DSSLTRSDIHY 221 (254)
T ss_dssp EEEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBC--CC---------EEEET----T-TTEEEBCHHHH
T ss_pred EEEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEE-ecCCCccc---------ceecc----c-CCcccCCHHHH
Confidence 999999999999998889999999999999 9999999 76443221 01110 1 13345789999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++||+++++....
T Consensus 222 ~~~l~~aGf~~~~~~~~~ 239 (254)
T 1xtp_A 222 KRLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHHTCCEEEEEECT
T ss_pred HHHHHHCCCEEEEeeecC
Confidence 999999999999987664
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-16 Score=143.85 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=118.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++++ .+++++|+ +.+++.++ +++++.+|+.+ +|..
T Consensus 53 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~-~~~~ 129 (287)
T 1kpg_A 53 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 129 (287)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh-CCCC
Confidence 345667666 66778999999999999999998775 49999999 77776554 68999999865 4443
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC-----CchhhhhhhccchhhhhhcCCCcc
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE-----FSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
|+|++..++||+++++...+|+++++.|+| ||++++. +...+.... .+.........+.......+++..
T Consensus 130 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (287)
T 1kpg_A 130 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLH-TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 205 (287)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEE-EEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred eeEEEEeCchhhcChHHHHHHHHHHHHhcCC---CCEEEEE-EecCCCccccccccccccccccchhhhHHheeCCCCCC
Confidence 999999999999877778999999999999 9999999 776543211 000000001111111122346777
Q ss_pred CCHHHHHHHHHHCCCCceEEEecC
Q 044482 310 RTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
++.+++.++++++||+++++...+
T Consensus 206 ~s~~~~~~~l~~aGf~~~~~~~~~ 229 (287)
T 1kpg_A 206 PSIPMVQECASANGFTVTRVQSLQ 229 (287)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CCHHHHHHHHHhCCcEEEEEEeCc
Confidence 899999999999999999887653
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.69 E-value=5.2e-17 Score=148.98 Aligned_cols=163 Identities=14% Similarity=0.177 Sum_probs=118.9
Q ss_pred cccccceEEecCCccHHHHHHH-HHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIV-NTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~-~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~ 242 (345)
.....+|||||||+|.++..++ ..+|+.+++++|+ +.+++.++ +++++.+|+.+ +++.. |+|++..
T Consensus 116 l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~ 195 (305)
T 3ocj_A 116 LRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNG 195 (305)
T ss_dssp CCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECC
Confidence 4566899999999999999996 6789999999999 88887665 49999999988 55544 9999999
Q ss_pred ccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc--------hhhhhhcCCC--ccCC
Q 044482 243 VLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD--------IVMYDLFPQA--KGRT 311 (345)
Q Consensus 243 vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d--------~~~~~~~~~~--~~rt 311 (345)
++||+++.+ ...+|+++++.|+| ||++++. +...+...... ..+.....+ .........+ ..++
T Consensus 196 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (305)
T 3ocj_A 196 LNIYEPDDARVTELYRRFWQALKP---GGALVTS-FLTPPPALSPD-SPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRT 270 (305)
T ss_dssp SGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEE-CCCCCTTTCTT-CCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCC
T ss_pred hhhhcCCHHHHHHHHHHHHHhcCC---CeEEEEE-ecCCCCccccc-ccceeeccccchhhhhhhHHHHHHhhhhhccCC
Confidence 999996554 45799999999999 9999999 76654332211 000000000 0011111011 3479
Q ss_pred HHHHHHHHHHCCCCceEEEecC-CceEEEEEEcC
Q 044482 312 AGEFKALAMAAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
.+++.++|+++||+++++.... .....+.++||
T Consensus 271 ~~~~~~~l~~aGF~~v~~~~~~~~~~~~v~a~Kp 304 (305)
T 3ocj_A 271 HAQTRAQLEEAGFTDLRFEDDRARLFPTVIARKP 304 (305)
T ss_dssp HHHHHHHHHHTTCEEEEEECCTTSSSCEEEEECC
T ss_pred HHHHHHHHHHCCCEEEEEEcccCceeeEEEEecC
Confidence 9999999999999999988654 34456777776
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.5e-16 Score=143.12 Aligned_cols=160 Identities=16% Similarity=0.225 Sum_probs=121.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++++ .+++++|+ +.+++.++ +++++.+|+.+. +..
T Consensus 61 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~-~~~ 137 (302)
T 3hem_A 61 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF-DEP 137 (302)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC-CCC
T ss_pred HHHHHHHcC-CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc-CCC
Confidence 445677776 67778999999999999999999987 79999999 88877665 588999998764 433
Q ss_pred -CEEEeccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhh-----hhhhccchhhhh
Q 044482 236 -QAIFTKSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSIN-----RNILTLDIVMYD 302 (345)
Q Consensus 236 -D~i~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~-----~~~~~~d~~~~~ 302 (345)
|+|++..++||++| +....+|+++++.|+| ||++++. +...++........ ......++....
T Consensus 138 fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (302)
T 3hem_A 138 VDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLH-TITIPDKEEAQELGLTSPMSLLRFIKFILTE 213 (302)
T ss_dssp CSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHSSCT---TCEEEEE-EEECCCHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ccEEEEcchHHhcCccccccchhHHHHHHHHHHHhcCC---CcEEEEE-EEeccCccchhhccccccccccchHHHHHHh
Confidence 99999999999955 5677999999999999 9999999 77655331100000 000001222222
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
..+++..++.+++.++++++||+++++...+
T Consensus 214 ~~p~~~~~s~~~~~~~l~~aGf~~~~~~~~~ 244 (302)
T 3hem_A 214 IFPGGRLPRISQVDYYSSNAGWKVERYHRIG 244 (302)
T ss_dssp TCTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCCHHHHHHHHHhCCcEEEEEEeCc
Confidence 3457788999999999999999999887664
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-16 Score=140.56 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=117.2
Q ss_pred HHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC
Q 044482 164 AIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV 232 (345)
Q Consensus 164 ~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~ 232 (345)
.+....+++.++ .....+|||||||+|.++..+++..+ +++++|+ +.+++.++ +++++.+|+.+ ++
T Consensus 7 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~ 83 (239)
T 1xxl_A 7 HHSLGLMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPF 83 (239)
T ss_dssp HHHHHHHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCS
T ss_pred CCCcchHHHHhC-cCCCCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCC
Confidence 344556777777 77888999999999999999999875 7999998 77877654 58999999987 66
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh-hhhhcCCCcc
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV-MYDLFPQAKG 309 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~ 309 (345)
+++ |+|++.+++||+++. ..+|++++++|+| ||++++. +...+... .. ....... .+........
T Consensus 84 ~~~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~ 151 (239)
T 1xxl_A 84 PDDSFDIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLV-DHYAPEDP---VL---DEFVNHLNRLRDPSHVRE 151 (239)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECBCSSH---HH---HHHHHHHHHHHCTTCCCC
T ss_pred CCCcEEEEEECCchhhccCH--HHHHHHHHHHcCC---CcEEEEE-EcCCCCCh---hH---HHHHHHHHHhccccccCC
Confidence 643 999999999999876 5889999999999 9999999 77655331 11 1111111 1111112456
Q ss_pred CCHHHHHHHHHHCCCCceEEEec
Q 044482 310 RTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++.++|.++|+++||+++++...
T Consensus 152 ~~~~~~~~ll~~aGf~~~~~~~~ 174 (239)
T 1xxl_A 152 SSLSEWQAMFSANQLAYQDIQKW 174 (239)
T ss_dssp CBHHHHHHHHHHTTEEEEEEEEE
T ss_pred CCHHHHHHHHHHCCCcEEEEEee
Confidence 78999999999999998877654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-16 Score=143.29 Aligned_cols=149 Identities=16% Similarity=0.236 Sum_probs=112.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
+....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.++
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~ 114 (276)
T 3mgg_A 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFV 114 (276)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESC
T ss_pred CCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEech
Confidence 56678999999999999999999999999999999 77877664 68999999988 66544 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch--hhhhhcCCCccCCHHHHHHHHHH
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI--VMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+|++++.. .+|+++++.|+| ||.+++. +.........+........... ...... ++..++..++.++|++
T Consensus 115 l~~~~~~~--~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~ 187 (276)
T 3mgg_A 115 LEHLQSPE--EALKSLKKVLKP---GGTITVI-EGDHGSCYFHPEGKKAIEAWNCLIRVQAYM-KGNSLVGRQIYPLLQE 187 (276)
T ss_dssp GGGCSCHH--HHHHHHHHHEEE---EEEEEEE-EECGGGCEEESCCHHHHHHHHHHHHHHHHT-TCCTTGGGGHHHHHHH
T ss_pred hhhcCCHH--HHHHHHHHHcCC---CcEEEEE-EcCCCCceECCCcHHHHHHHHHHHHHHHhc-CCCcchHHHHHHHHHH
Confidence 99999875 889999999999 9999998 7533211000000000011111 111222 5666788999999999
Q ss_pred CCCCceEEEec
Q 044482 322 AGFGTIKVICR 332 (345)
Q Consensus 322 aGf~~~~~~~~ 332 (345)
+||+++++...
T Consensus 188 aGf~~v~~~~~ 198 (276)
T 3mgg_A 188 SGFEKIRVEPR 198 (276)
T ss_dssp TTCEEEEEEEE
T ss_pred CCCCeEEEeeE
Confidence 99999888654
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-16 Score=133.71 Aligned_cols=146 Identities=10% Similarity=0.064 Sum_probs=116.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC--CEEEec
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG--QAIFTK 241 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~--D~i~~~ 241 (345)
.+++.++ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+| .+++.+ |+|++.
T Consensus 8 ~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~v~~~~~d--~~~~~~~~D~v~~~ 82 (170)
T 3i9f_A 8 EYLPNIF-EGKKGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEKFDSVITLSDP--KEIPDNSVDFILFA 82 (170)
T ss_dssp TTHHHHH-SSCCEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHHCTTSEEESSG--GGSCTTCEEEEEEE
T ss_pred HHHHhcC-cCCCCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHhCCCcEEEeCC--CCCCCCceEEEEEc
Confidence 3445555 66678999999999999999999874 8999998 77877765 79999999 455543 999999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
+++|++++. ..+|+++++.|+| ||++++. +.........+. ....++.++|+++++
T Consensus 83 ~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~-----------------~~~~~~~~~~~~~l~- 138 (170)
T 3i9f_A 83 NSFHDMDDK--QHVISEVKRILKD---DGRVIII-DWRKENTGIGPP-----------------LSIRMDEKDYMGWFS- 138 (170)
T ss_dssp SCSTTCSCH--HHHHHHHHHHEEE---EEEEEEE-EECSSCCSSSSC-----------------GGGCCCHHHHHHHTT-
T ss_pred cchhcccCH--HHHHHHHHHhcCC---CCEEEEE-EcCccccccCch-----------------HhhhcCHHHHHHHHh-
Confidence 999999765 5899999999999 9999999 776543322110 112268999999999
Q ss_pred CCCCceEEEecCCceEEEEEEcC
Q 044482 322 AGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
||+++++.........+.+.++
T Consensus 139 -Gf~~~~~~~~~~~~~~l~~~~~ 160 (170)
T 3i9f_A 139 -NFVVEKRFNPTPYHFGLVLKRK 160 (170)
T ss_dssp -TEEEEEEECSSTTEEEEEEEEC
T ss_pred -CcEEEEccCCCCceEEEEEecC
Confidence 9999999998877777777764
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-16 Score=140.02 Aligned_cols=150 Identities=11% Similarity=0.034 Sum_probs=113.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.
T Consensus 25 ~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 102 (256)
T 1nkv_A 25 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 102 (256)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCC
Confidence 345566666 6677899999999999999999988 678999999 88877664 59999999987 4433
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
. |+|++..++|++++. .++|++++++|+| ||++++. +............ ..... ... ....++.+
T Consensus 103 ~fD~V~~~~~~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~~~~~~--~~~~~-----~~~-~~~~~~~~ 168 (256)
T 1nkv_A 103 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIG-EPYWRQLPATEEI--AQACG-----VSS-TSDFLTLP 168 (256)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEE-EEEETTCCSSHHH--HHTTT-----CSC-GGGSCCHH
T ss_pred CCCEEEECCChHhcCCH--HHHHHHHHHHcCC---CeEEEEe-cCcccCCCChHHH--HHHHh-----ccc-ccccCCHH
Confidence 3 999999999999875 5889999999999 9999999 7665443221110 00000 000 12457899
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
+|.++++++||+++++...
T Consensus 169 ~~~~~l~~aGf~~~~~~~~ 187 (256)
T 1nkv_A 169 GLVGAFDDLGYDVVEMVLA 187 (256)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHCCCeeEEEEeC
Confidence 9999999999999887654
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.5e-16 Score=140.72 Aligned_cols=135 Identities=13% Similarity=0.128 Sum_probs=109.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
...+|||||||+|.++..++++. ..+++++|+ +.+++.++ +++++.+|+.+ +.+.+ |+|++.+++|
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhh
Confidence 46799999999999999999887 568999999 88887765 37899999877 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
++++++...+|+++++.|+| ||++++. +...+. .. .++ .. .+...++.++|.++++++||+
T Consensus 158 ~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~---~~-------~~~----~~-~~~~~~~~~~~~~~l~~aGf~ 218 (241)
T 2ex4_A 158 HLTDQHLAEFLRRCKGSLRP---NGIIVIK-DNMAQE---GV-------ILD----DV-DSSVCRDLDVVRRIICSAGLS 218 (241)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEBSS---SE-------EEE----TT-TTEEEEBHHHHHHHHHHTTCC
T ss_pred hCCHHHHHHHHHHHHHhcCC---CeEEEEE-EccCCC---cc-------eec----cc-CCcccCCHHHHHHHHHHcCCe
Confidence 99998888999999999999 9999999 776543 10 111 01 133456899999999999999
Q ss_pred ceEEEecC
Q 044482 326 TIKVICRS 333 (345)
Q Consensus 326 ~~~~~~~~ 333 (345)
++++....
T Consensus 219 ~~~~~~~~ 226 (241)
T 2ex4_A 219 LLAEERQE 226 (241)
T ss_dssp EEEEEECC
T ss_pred EEEeeecC
Confidence 99987664
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=140.94 Aligned_cols=159 Identities=14% Similarity=0.229 Sum_probs=119.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..+++++ +.+++++|+ +.+++.++ +++++.+|+.+ +|..
T Consensus 79 ~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~ 155 (318)
T 2fk8_A 79 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 155 (318)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHH-CCCC
Confidence 445677766 6677899999999999999999987 569999999 77777665 48999999865 3444
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc----hhh-hhhhccchhhhhhcCCCcc
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS----SIN-RNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~----~~~-~~~~~~d~~~~~~~~~~~~ 309 (345)
|+|++..++||+++++...+|+++++.|+| ||++++. +...+...... ... ......+.......+++..
T Consensus 156 fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (318)
T 2fk8_A 156 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQ-SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 231 (318)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEE-EEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred cCEEEEeChHHhcCHHHHHHHHHHHHHhcCC---CcEEEEE-EeccCCchhhhhccccccccccchhhHHHHhcCCCCcC
Confidence 999999999999877778999999999999 9999999 77654321000 000 0000112211122346777
Q ss_pred CCHHHHHHHHHHCCCCceEEEec
Q 044482 310 RTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
++.+++.++++++||+++++...
T Consensus 232 ~s~~~~~~~l~~aGf~~~~~~~~ 254 (318)
T 2fk8_A 232 PSTEMMVEHGEKAGFTVPEPLSL 254 (318)
T ss_dssp CCHHHHHHHHHHTTCBCCCCEEC
T ss_pred CCHHHHHHHHHhCCCEEEEEEec
Confidence 89999999999999999887665
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=6.4e-16 Score=137.70 Aligned_cols=148 Identities=14% Similarity=0.097 Sum_probs=112.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.+++.+.......+|||||||+|.++..+++++|. +++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 114 (257)
T 3f4k_A 36 KAVSFINELTDDAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEE 114 (257)
T ss_dssp HHHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTC
T ss_pred HHHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCC
Confidence 44555533566679999999999999999999986 9999999 77877665 49999999977 66643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++||++. ..+|+++++.|+| ||++++. +.......... ...+...- . ....++.++
T Consensus 115 fD~v~~~~~l~~~~~---~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~------~~~~~~~~-~--~~~~~~~~~ 178 (257)
T 3f4k_A 115 LDLIWSEGAIYNIGF---ERGMNEWSKYLKK---GGFIAVS-EASWFTSERPA------EIEDFWMD-A--YPEISVIPT 178 (257)
T ss_dssp EEEEEEESCSCCCCH---HHHHHHHHTTEEE---EEEEEEE-EEEESSSCCCH------HHHHHHHH-H--CTTCCBHHH
T ss_pred EEEEEecChHhhcCH---HHHHHHHHHHcCC---CcEEEEE-EeeccCCCChH------HHHHHHHH-h--CCCCCCHHH
Confidence 99999999999942 4789999999999 9999999 76533322111 11111111 1 123568999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
|.++++++||+++++...+
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (257)
T 3f4k_A 179 CIDKMERAGYTPTAHFILP 197 (257)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCeEEEEEECC
Confidence 9999999999999887665
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.65 E-value=1.8e-15 Score=131.72 Aligned_cols=162 Identities=12% Similarity=0.037 Sum_probs=111.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NV 232 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~ 232 (345)
.+++.+. .....+|||||||+|.++..++++.|..+++++|+ +.+++.++ +++++.+|+.. +.
T Consensus 20 ~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~ 98 (219)
T 3jwg_A 20 TVVAVLK-SVNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK 98 (219)
T ss_dssp HHHHHHH-HTTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred HHHHHHh-hcCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence 3444444 34567999999999999999999999899999999 77877664 58999999865 44
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 233 PS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 233 p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+. . |+|++..++||+++++..++|+++++.|+| ||.+++. ........ ............ .....+
T Consensus 99 ~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~~i~~-~~~~~~~~-------~~~~~~~~~~~~-~~~~~~ 166 (219)
T 3jwg_A 99 RFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRP---QTVIVST-PNKEYNFH-------YGNLFEGNLRHR-DHRFEW 166 (219)
T ss_dssp GGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBGGGGGC-------CCCT-----GGG-CCTTSB
T ss_pred ccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCC---CEEEEEc-cchhhhhh-------hcccCccccccc-Cceeee
Confidence 32 3 999999999999999888999999999999 9966655 32111000 000000000011 123456
Q ss_pred CHHHHH----HHHHHCCCCceEEEecC-------CceEEEEEEcC
Q 044482 311 TAGEFK----ALAMAAGFGTIKVICRS-------YCYWVIEFYKP 344 (345)
Q Consensus 311 t~~e~~----~ll~~aGf~~~~~~~~~-------~~~~vi~~~k~ 344 (345)
+.++++ ++++++||++... .+. ....+-.++|.
T Consensus 167 ~~~~l~~~~~~l~~~~Gf~v~~~-~~g~~~~~~g~~~qi~~~~~~ 210 (219)
T 3jwg_A 167 TRKEFQTWAVKVAEKYGYSVRFL-QIGEIDDEFGSPTQMGVFTLG 210 (219)
T ss_dssp CHHHHHHHHHHHHHHHTEEEEEE-EESCCCTTSCCSEEEEEEEEC
T ss_pred cHHHHHHHHHHHHHHCCcEEEEE-ecCCccccCCCCeEEEEEecc
Confidence 889998 7889999976443 221 23456666653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=136.70 Aligned_cols=128 Identities=15% Similarity=0.169 Sum_probs=104.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEeccccccC
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNW 247 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~ 247 (345)
.+|||||||+|.++..+++ +..+++++|+ +.+++.++ +++++.+|+.+..+. . |+|++..++|++
T Consensus 68 ~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~ 145 (235)
T 3lcc_A 68 GRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCAI 145 (235)
T ss_dssp EEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTTS
T ss_pred CCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhcC
Confidence 5999999999999999976 5678999999 78877665 489999999984443 3 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
++++...+|+++++.|+| ||++++. +......... ....++.++|.++|+++||+++
T Consensus 146 ~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~-------------------~~~~~~~~~~~~~l~~~Gf~~~ 202 (235)
T 3lcc_A 146 EPEMRPAWAKSMYELLKP---DGELITL-MYPITDHVGG-------------------PPYKVDVSTFEEVLVPIGFKAV 202 (235)
T ss_dssp CGGGHHHHHHHHHHHEEE---EEEEEEE-ECCCSCCCSC-------------------SSCCCCHHHHHHHHGGGTEEEE
T ss_pred CHHHHHHHHHHHHHHCCC---CcEEEEE-EecccccCCC-------------------CCccCCHHHHHHHHHHcCCeEE
Confidence 988888999999999999 9999998 6543322111 0112578999999999999999
Q ss_pred EEEecC
Q 044482 328 KVICRS 333 (345)
Q Consensus 328 ~~~~~~ 333 (345)
++...+
T Consensus 203 ~~~~~~ 208 (235)
T 3lcc_A 203 SVEENP 208 (235)
T ss_dssp EEEECT
T ss_pred EEEecC
Confidence 987765
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.8e-16 Score=143.64 Aligned_cols=171 Identities=9% Similarity=0.021 Sum_probs=117.2
Q ss_pred HHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-
Q 044482 165 IVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFV- 230 (345)
Q Consensus 165 ~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~- 230 (345)
.....+++.++ .. ..+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+
T Consensus 70 ~~~~~~~~~~~-~~-~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~ 145 (299)
T 3g2m_A 70 SEAREFATRTG-PV-SGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAF 145 (299)
T ss_dssp HHHHHHHHHHC-CC-CSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBC
T ss_pred HHHHHHHHhhC-CC-CCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcC
Confidence 34455666665 32 349999999999999999988 468999999 88887665 38899999998
Q ss_pred CCCCC-CEEEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchh---h-----------hh--
Q 044482 231 NVPSG-QAIFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSI---N-----------RN-- 292 (345)
Q Consensus 231 ~~p~~-D~i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~---~-----------~~-- 292 (345)
+.+.. |+|++. .++|++++++..++|+++++.|+| ||++++. ....+........ . +.
T Consensus 146 ~~~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 221 (299)
T 3g2m_A 146 ALDKRFGTVVISSGSINELDEADRRGLYASVREHLEP---GGKFLLS-LAMSEAAESEPLERKQELPGRSGRRYVLHVRH 221 (299)
T ss_dssp CCSCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEE---EEEEEEE-EECCHHHHSCCCCC-------------CCEEE
T ss_pred CcCCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCC---CcEEEEE-eecCccccccchhccceeecCCCcEEEEEEEE
Confidence 55444 988864 778888888889999999999999 9999887 5443211000000 0 00
Q ss_pred h---hccchhhhhhc-CC---------CccCCHHHHHHHHHHCCCCceEEEecCC------ceEEEEEEc
Q 044482 293 I---LTLDIVMYDLF-PQ---------AKGRTAGEFKALAMAAGFGTIKVICRSY------CYWVIEFYK 343 (345)
Q Consensus 293 ~---~~~d~~~~~~~-~~---------~~~rt~~e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k 343 (345)
. ....+...... .+ -+.+|.++|+++|+++||+++++.+.+. ...++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~el~~ll~~aGF~v~~~~~~~~~g~~~~~~~lvea~~ 291 (299)
T 3g2m_A 222 LPAEEIQEITIHPADETTDPFVVCTHRRRLLAPDQVVRELVRSGFDVIAQTPFASGGAGRKDMVLVEAVM 291 (299)
T ss_dssp EEEEEEEEEEEEESCC--CCCCEEEEEEEEECHHHHHHHHHHTTCEEEEEEEECTTSSSSCCEEEEEEEC
T ss_pred eccccEEEEEEEeccCCCCcEEEEEEEEEEeCHHHHHHHHHHCCCEEEEEEecCCCCCCccceeeeehhh
Confidence 0 00000000000 00 1246999999999999999999988752 246777765
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.1e-15 Score=132.14 Aligned_cols=134 Identities=13% Similarity=0.089 Sum_probs=106.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCC-C-CEEEeccccccCCh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPS-G-QAIFTKSVLLNWSD 249 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~-~-D~i~~~~vlh~~~d 249 (345)
+....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ + +. . |+|++.+++||+++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~d~~~~~-~~~~fD~v~~~~~l~~~~~ 117 (211)
T 3e23_A 41 LPAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRLGRPVRTMLFHQLD-AIDAYDAVWAHACLLHVPR 117 (211)
T ss_dssp SCTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHTSCCEECCGGGCC-CCSCEEEEEECSCGGGSCH
T ss_pred cCCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhcCCceEEeeeccCC-CCCcEEEEEecCchhhcCH
Confidence 345679999999999999999987 568999999 88888877 78899999887 5 43 3 99999999999998
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC-CCceE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG-FGTIK 328 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG-f~~~~ 328 (345)
++...+|+++++.|+| ||++++. ......... .... .....++.++|.++++++| |++++
T Consensus 118 ~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~--------~~~~-------~~~~~~~~~~~~~~l~~aG~f~~~~ 178 (211)
T 3e23_A 118 DELADVLKLIWRALKP---GGLFYAS-YKSGEGEGR--------DKLA-------RYYNYPSEEWLRARYAEAGTWASVA 178 (211)
T ss_dssp HHHHHHHHHHHHHEEE---EEEEEEE-EECCSSCEE--------CTTS-------CEECCCCHHHHHHHHHHHCCCSEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-EcCCCcccc--------cccc-------hhccCCCHHHHHHHHHhCCCcEEEE
Confidence 8889999999999999 9999888 533221100 0000 0112468999999999999 99998
Q ss_pred EEec
Q 044482 329 VICR 332 (345)
Q Consensus 329 ~~~~ 332 (345)
+...
T Consensus 179 ~~~~ 182 (211)
T 3e23_A 179 VESS 182 (211)
T ss_dssp EEEE
T ss_pred EEec
Confidence 8654
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-16 Score=140.76 Aligned_cols=157 Identities=12% Similarity=0.098 Sum_probs=112.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.+.......+|||||||+|.++..+++.+|+ .+++++|+ |.+++.++ +++++.+|+.+ +.+.. |
T Consensus 12 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD 91 (284)
T 3gu3_A 12 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 91 (284)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcCcCCCee
Confidence 34444432566789999999999999999999995 89999999 77776554 68999999988 55444 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC-----C---CCCCCchhhhhhhccchhh--hhhcCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL-----P---ESPEFSSINRNILTLDIVM--YDLFPQ 306 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~-----~---~~~~~~~~~~~~~~~d~~~--~~~~~~ 306 (345)
+|++.+++|++++. ..+|+++++.|+| ||++++. +... . ++...+..........+.. .... +
T Consensus 92 ~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 164 (284)
T 3gu3_A 92 IAICHAFLLHMTTP--ETMLQKMIHSVKK---GGKIICF-EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRN-G 164 (284)
T ss_dssp EEEEESCGGGCSSH--HHHHHHHHHTEEE---EEEEEEE-ECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHT-C
T ss_pred EEEECChhhcCCCH--HHHHHHHHHHcCC---CCEEEEE-ecchhcccccceecCcchhhccchHHHHHHHHHHhhhh-c
Confidence 99999999999887 4899999999999 9999999 7651 1 1111000000001111111 1122 4
Q ss_pred CccCCHHHHHHHHHHCCCCceEEEec
Q 044482 307 AKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 307 ~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
....+..++.++|++|||+.+++...
T Consensus 165 ~~~~~~~~l~~~l~~aGF~~v~~~~~ 190 (284)
T 3gu3_A 165 KDGNIGMKIPIYLSELGVKNIECRVS 190 (284)
T ss_dssp CCTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred ccccHHHHHHHHHHHcCCCeEEEEEc
Confidence 44566778999999999999877543
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=7.8e-16 Score=138.23 Aligned_cols=148 Identities=16% Similarity=0.101 Sum_probs=112.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
.+++.++......+|||||||+|.++..+++. |..+++++|+ +.+++.++ +++++.+|+.+ +++.+
T Consensus 36 ~~l~~l~~~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 114 (267)
T 3kkz_A 36 KALSFIDNLTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEE 114 (267)
T ss_dssp HHHTTCCCCCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTC
T ss_pred HHHHhcccCCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCC
Confidence 34444443556789999999999999999998 8889999999 78777665 59999999987 65544
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++..++|+++ . ..+|+++++.|+| ||++++. +........... ..+... .. ....++.++
T Consensus 115 fD~i~~~~~~~~~~-~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~------~~~~~~-~~--~~~~~~~~~ 178 (267)
T 3kkz_A 115 LDLIWSEGAIYNIG-F--ERGLNEWRKYLKK---GGYLAVS-ECSWFTDERPAE------INDFWM-DA--YPEIDTIPN 178 (267)
T ss_dssp EEEEEESSCGGGTC-H--HHHHHHHGGGEEE---EEEEEEE-EEEESSSCCCHH------HHHHHH-HH--CTTCEEHHH
T ss_pred EEEEEEcCCceecC-H--HHHHHHHHHHcCC---CCEEEEE-EeeecCCCChHH------HHHHHH-Hh--CCCCCCHHH
Confidence 9999999999993 3 5789999999999 9999999 775433322111 111111 11 224568999
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++++++||+++++...+
T Consensus 179 ~~~~l~~aGf~~v~~~~~~ 197 (267)
T 3kkz_A 179 QVAKIHKAGYLPVATFILP 197 (267)
T ss_dssp HHHHHHHTTEEEEEEEECC
T ss_pred HHHHHHHCCCEEEEEEECC
Confidence 9999999999999887765
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.63 E-value=8.6e-16 Score=135.69 Aligned_cols=146 Identities=14% Similarity=0.042 Sum_probs=104.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCcCCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d 249 (345)
....+|||||||+|.++..++++.+ +++++|+ +.+++.++ +++++.+|+.+..+++ |+|++.++|||+++
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~~~~ 118 (250)
T 2p7i_A 41 FRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHIDD 118 (250)
T ss_dssp CCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCSS
T ss_pred cCCCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhhhCCeEEEEccHHHcCcCCcccEEEEhhHHHhhcC
Confidence 3557899999999999999999877 6899998 78877665 6899999998754433 99999999999988
Q ss_pred hHHHHHHHHHH-hhCCCCCCCcEEEEEeccCCCCCCCCch--hhhhhhc--cchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 250 EQCLKILKNCY-DALPKSRKHGRTQLRSKRGLPESPEFSS--INRNILT--LDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 250 ~~~~~iL~~~~-~aL~p~~~gG~lli~~d~~~~~~~~~~~--~~~~~~~--~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
. ..+|++++ +.|+| ||++++. +........... ....... +.-..... .....++.+++.++|+++||
T Consensus 119 ~--~~~l~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf 191 (250)
T 2p7i_A 119 P--VALLKRINDDWLAE---GGRLFLV-CPNANAVSRQIAVKMGIISHNSAVTEAEFAH-GHRCTYALDTLERDASRAGL 191 (250)
T ss_dssp H--HHHHHHHHHTTEEE---EEEEEEE-EECTTCHHHHHHHHTTSSSSTTCCCHHHHHT-TCCCCCCHHHHHHHHHHTTC
T ss_pred H--HHHHHHHHHHhcCC---CCEEEEE-cCChHHHHHHHHHHcCccccchhcccccccc-cccccCCHHHHHHHHHHCCC
Confidence 7 48999999 99999 9999998 642211000000 0000000 00000011 13456799999999999999
Q ss_pred CceEEEec
Q 044482 325 GTIKVICR 332 (345)
Q Consensus 325 ~~~~~~~~ 332 (345)
+++++...
T Consensus 192 ~~~~~~~~ 199 (250)
T 2p7i_A 192 QVTYRSGI 199 (250)
T ss_dssp EEEEEEEE
T ss_pred eEEEEeee
Confidence 99887643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=133.75 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=105.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~ 248 (345)
...+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++.+++||++
T Consensus 53 ~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~ 130 (242)
T 3l8d_A 53 KEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERGEGPDLSFIKGDLSSLPFENEQFEAIMAINSLEWTE 130 (242)
T ss_dssp TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTTCBTTEEEEECBTTBCSSCTTCEEEEEEESCTTSSS
T ss_pred CCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhcccCCceEEEcchhcCCCCCCCccEEEEcChHhhcc
Confidence 5579999999999999999988 568999999 77777654 79999999988 66644 9999999999997
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
+. ..+|+++++.|+| ||++++. +........ . .......-.. .....++.+++.++++++||++++
T Consensus 131 ~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~~~~~---~----~~~~~~~~~~-~~~~~~~~~~~~~~l~~~Gf~~~~ 196 (242)
T 3l8d_A 131 EP--LRALNEIKRVLKS---DGYACIA-ILGPTAKPR---E----NSYPRLYGKD-VVCNTMMPWEFEQLVKEQGFKVVD 196 (242)
T ss_dssp CH--HHHHHHHHHHEEE---EEEEEEE-EECTTCGGG---G----GGGGGGGTCC-CSSCCCCHHHHHHHHHHTTEEEEE
T ss_pred CH--HHHHHHHHHHhCC---CeEEEEE-EcCCcchhh---h----hhhhhhcccc-ccccCCCHHHHHHHHHHcCCEEEE
Confidence 76 4789999999999 9999998 643221110 0 0001000011 123457899999999999999998
Q ss_pred EEec
Q 044482 329 VICR 332 (345)
Q Consensus 329 ~~~~ 332 (345)
+...
T Consensus 197 ~~~~ 200 (242)
T 3l8d_A 197 GIGV 200 (242)
T ss_dssp EEEE
T ss_pred eecc
Confidence 8754
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-15 Score=130.85 Aligned_cols=146 Identities=8% Similarity=0.006 Sum_probs=103.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CCC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NVP 233 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~p 233 (345)
+++.++ .....+|||||||+|.++..+++++|..+++++|+ +.+++.++ +++++.+|+.. +.+
T Consensus 21 l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~ 99 (217)
T 3jwh_A 21 VVAALK-QSNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKR 99 (217)
T ss_dssp HHHHHH-HTTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGG
T ss_pred HHHHHH-hcCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccccc
Confidence 344444 44567999999999999999999999899999999 77777654 48999999865 443
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|++.+++||+++++..++|+++++.|+| ||.+++. .... ....... +....+........++
T Consensus 100 ~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~ 167 (217)
T 3jwh_A 100 FHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQP---KIVIVTT-PNIE-------YNVKFAN-LPAGKLRHKDHRFEWT 167 (217)
T ss_dssp GCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCC---SEEEEEE-EBHH-------HHHHTC------------CCSCBC
T ss_pred CCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCC---CEEEEEc-cCcc-------cchhhcc-cccccccccccccccC
Confidence 23 999999999999999888999999999999 9976666 3210 0000000 0000000111234568
Q ss_pred HHHHH----HHHHHCCCCceE
Q 044482 312 AGEFK----ALAMAAGFGTIK 328 (345)
Q Consensus 312 ~~e~~----~ll~~aGf~~~~ 328 (345)
.+++. ++++++||++..
T Consensus 168 ~~~l~~~~~~~~~~~Gf~v~~ 188 (217)
T 3jwh_A 168 RSQFQNWANKITERFAYNVQF 188 (217)
T ss_dssp HHHHHHHHHHHHHHSSEEEEE
T ss_pred HHHHHHHHHHHHHHcCceEEE
Confidence 99998 889999997643
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.4e-15 Score=132.62 Aligned_cols=166 Identities=16% Similarity=0.115 Sum_probs=112.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+.+.++ ...+|||||||+|.++..+++. .+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 26 ~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 99 (243)
T 3d2l_A 26 WVLEQVE---PGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELELPEPVDA 99 (243)
T ss_dssp HHHHHSC---TTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCCCSSCEEE
T ss_pred HHHHHcC---CCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcCCCCCcCE
Confidence 3444433 3479999999999999999887 68999999 88887665 58999999987 55544 99
Q ss_pred EEecc-ccccC-ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC-------CCCCC-----CCchhhhh--------hhc
Q 044482 238 IFTKS-VLLNW-SDEQCLKILKNCYDALPKSRKHGRTQLRSKRG-------LPESP-----EFSSINRN--------ILT 295 (345)
Q Consensus 238 i~~~~-vlh~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~-------~~~~~-----~~~~~~~~--------~~~ 295 (345)
|++.. ++||+ +.++...+|+++++.|+| ||++++. -.. .+... ......+. ...
T Consensus 100 v~~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (243)
T 3d2l_A 100 ITILCDSLNYLQTEADVKQTFDSAARLLTD---GGKLLFD-VHSPYKMETLFNGKTYATHAEQSSYIWFADPGEEPLSVV 175 (243)
T ss_dssp EEECTTGGGGCCSHHHHHHHHHHHHHHEEE---EEEEEEE-EECHHHHHTTTSSEEEEEECSSEEEEEEEEECSSTTEEE
T ss_pred EEEeCCchhhcCCHHHHHHHHHHHHHhcCC---CeEEEEE-cCCHHHHHHhcCCcceeEECCCcEEEEEeecCccccEEE
Confidence 99986 99998 556778999999999999 9988874 211 00000 00000000 000
Q ss_pred cchhhhhhcCCC-----------ccCCHHHHHHHHHHCCCCceEEEecC--------CceEEEEEEcC
Q 044482 296 LDIVMYDLFPQA-----------KGRTAGEFKALAMAAGFGTIKVICRS--------YCYWVIEFYKP 344 (345)
Q Consensus 296 ~d~~~~~~~~~~-----------~~rt~~e~~~ll~~aGf~~~~~~~~~--------~~~~vi~~~k~ 344 (345)
.++.++....++ +.++.++++++|++|||+++++.... +...+++++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~va~K~ 243 (243)
T 3d2l_A 176 HELTFFIEGEDGRYDRVDETHHQRTYPPEQYITWLREAGFRVCAVTGDFKSDAPTETAERIFFVAEKI 243 (243)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEETTSSSCCCTTCSEEEEEEEEC
T ss_pred EEEEEEEEcCCCceEEEEEEEeEecCCHHHHHHHHHHCCCeEEEEecCcccCCCCCCceEEEEEEEeC
Confidence 111111111111 34799999999999999999987541 24568888875
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.1e-15 Score=133.85 Aligned_cols=158 Identities=7% Similarity=0.019 Sum_probs=111.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hh------HhhhCC----------CceEEecc-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PY------VIKNAP----------CVEHVEGD-M 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~------~i~~a~----------ri~~~~gd-~ 228 (345)
..+++.++ .....+|||||||+|.++..+++++ |+.+++++|+ +. +++.++ +++++.+| +
T Consensus 33 ~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~ 111 (275)
T 3bkx_A 33 LAIAEAWQ-VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNL 111 (275)
T ss_dssp HHHHHHHT-CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCT
T ss_pred HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChh
Confidence 35666666 6677899999999999999999996 7789999999 43 665543 68999998 5
Q ss_pred Cc---CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 229 FV---NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 229 ~~---~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
.. +++.+ |+|++.+++||+++.+ .+++.+++.++| ||++++. +...+......................
T Consensus 112 ~~~~~~~~~~~fD~v~~~~~l~~~~~~~--~~~~~~~~l~~~---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (275)
T 3bkx_A 112 SDDLGPIADQHFDRVVLAHSLWYFASAN--ALALLFKNMAAV---CDHVDVA-EWSMQPTALDQIGHLQAAMIQGLLYAI 185 (275)
T ss_dssp TTCCGGGTTCCCSEEEEESCGGGSSCHH--HHHHHHHHHTTT---CSEEEEE-EECSSCSSGGGHHHHHHHHHHHHHHHH
T ss_pred hhccCCCCCCCEEEEEEccchhhCCCHH--HHHHHHHHHhCC---CCEEEEE-EecCCCCchhhhhHHHHHHHHHHHhhc
Confidence 43 33433 9999999999999885 478888888888 9999999 877654422110000000000000001
Q ss_pred c---CC--CccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 F---PQ--AKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~---~~--~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
. .. ...++.+++.++++++||+++++...
T Consensus 186 ~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 186 APSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp SCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred cccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 0 01 13579999999999999999887655
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.62 E-value=6.4e-16 Score=136.42 Aligned_cols=159 Identities=9% Similarity=-0.011 Sum_probs=111.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEecc-cccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKS-VLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~-vlh~ 246 (345)
...+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|++.. ++||
T Consensus 37 ~~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~ 114 (246)
T 1y8c_A 37 VFDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNY 114 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred CCCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCCccCCceEEEEcCccccc
Confidence 4579999999999999999988 457999999 88887665 58999999987 55544 9999998 9999
Q ss_pred CCh-hHHHHHHHHHHhhCCCCCCCcEEEEEeccCC-------CCCC-----CCchhhhh------hhccchhhhhhcCCC
Q 044482 247 WSD-EQCLKILKNCYDALPKSRKHGRTQLRSKRGL-------PESP-----EFSSINRN------ILTLDIVMYDLFPQA 307 (345)
Q Consensus 247 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~-------~~~~-----~~~~~~~~------~~~~d~~~~~~~~~~ 307 (345)
+++ ++...+|+++++.|+| ||++++. -... +... ......+. ....++.++... ++
T Consensus 115 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 189 (246)
T 1y8c_A 115 IIDSDDLKKYFKAVSNHLKE---GGVFIFD-INSYYKLSQVLGNNDFNYDDDEVFYYWENQFEDDLVSMYISFFVRD-GE 189 (246)
T ss_dssp CCSHHHHHHHHHHHHTTEEE---EEEEEEE-EECHHHHHTTTTTCCEEEEETTEEEEEEEEEETTEEEEEEEEEEEC-SS
T ss_pred cCCHHHHHHHHHHHHHhcCC---CcEEEEE-ecCHHHHHhhcCcceEEecCCcEEEEEecccCCceEEEEEEEEEec-CC
Confidence 954 6778999999999999 9988874 2210 0000 00000000 000011111111 11
Q ss_pred -----------ccCCHHHHHHHHHHCCCCceEEEec--------CCceEEEEEEcC
Q 044482 308 -----------KGRTAGEFKALAMAAGFGTIKVICR--------SYCYWVIEFYKP 344 (345)
Q Consensus 308 -----------~~rt~~e~~~ll~~aGf~~~~~~~~--------~~~~~vi~~~k~ 344 (345)
..++.++|+++|+++||+++++... .....+++++|+
T Consensus 190 ~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~~~~~~~~~~~~~~~~~~varK~ 245 (246)
T 1y8c_A 190 FYKRFDEEHEERAYKEEDIEKYLKHGQLNILDKVDCYSNKKVEKFTERITYLVKLG 245 (246)
T ss_dssp SEEEEEEEEEEECCCHHHHHHHHHHTTEEEEEEEESSSSCBCCTTCSEEEEEEEEC
T ss_pred cccccEEEEEEEcCCHHHHHHHHHHCCCeEEEEEcccccCcCCCCceeEEEEEEec
Confidence 3469999999999999999998654 224568888886
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-16 Score=132.18 Aligned_cols=138 Identities=9% Similarity=0.066 Sum_probs=104.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------------CceEEecc
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------------CVEHVEGD 227 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------------ri~~~~gd 227 (345)
+++.+. .....+|||+|||+|..+..++++ +.+++++|+ +.+++.|+ +++++.+|
T Consensus 14 ~~~~l~-~~~~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d 90 (203)
T 1pjz_A 14 YWSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGD 90 (203)
T ss_dssp HHHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEEC
T ss_pred HHHhcc-cCCCCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECc
Confidence 344444 556689999999999999999987 468999999 78877553 47899999
Q ss_pred CCc-CCCC--C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh
Q 044482 228 MFV-NVPS--G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL 303 (345)
Q Consensus 228 ~~~-~~p~--~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~ 303 (345)
+++ +.+. . |+|+++.++|++++++..+++++++++|+| ||+++++ ....+... .
T Consensus 91 ~~~l~~~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~Lkp---gG~~~l~-~~~~~~~~------------------~ 148 (203)
T 1pjz_A 91 FFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLI-TLEYDQAL------------------L 148 (203)
T ss_dssp CSSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEE-EESSCSSS------------------S
T ss_pred cccCCcccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCC---CcEEEEE-EEecCccc------------------c
Confidence 988 4442 3 999999999999988888899999999999 9995555 32222110 0
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.......+.+++++++++ ||+++.+....
T Consensus 149 ~~~~~~~~~~el~~~~~~-gf~i~~~~~~~ 177 (203)
T 1pjz_A 149 EGPPFSVPQTWLHRVMSG-NWEVTKVGGQD 177 (203)
T ss_dssp SSCCCCCCHHHHHHTSCS-SEEEEEEEESS
T ss_pred CCCCCCCCHHHHHHHhcC-CcEEEEecccc
Confidence 001122578999999999 99988776553
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-15 Score=134.11 Aligned_cols=156 Identities=13% Similarity=0.047 Sum_probs=107.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QAI 238 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~i 238 (345)
.+.+.++ .....+|||||||+|.++..++++.+ .+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|
T Consensus 34 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~v 111 (243)
T 3bkw_A 34 ALRAMLP-EVGGLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAGPDTGITYERADLDKLHLPQDSFDLA 111 (243)
T ss_dssp HHHHHSC-CCTTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTSCSSSEEEEECCGGGCCCCTTCEEEE
T ss_pred HHHHhcc-ccCCCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhcccCCceEEEcChhhccCCCCCceEE
Confidence 4555555 45667999999999999999998743 38999999 78877665 58999999987 65543 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC--CCCCCchh----h----hhhhcc-----chhhhhh
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP--ESPEFSSI----N----RNILTL-----DIVMYDL 303 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~--~~~~~~~~----~----~~~~~~-----d~~~~~~ 303 (345)
++.+++|++++. ..+|+++++.|+| ||++++. +.... ........ . .....+ ....+..
T Consensus 112 ~~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (243)
T 3bkw_A 112 YSSLALHYVEDV--ARLFRTVHQALSP---GGHFVFS-TEHPIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAK 185 (243)
T ss_dssp EEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECHHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHH
T ss_pred EEeccccccchH--HHHHHHHHHhcCc---CcEEEEE-eCCcccccCcCcceeecCCCceEEeecccccccceeeeeccC
Confidence 999999999865 5899999999999 9999987 53210 00000000 0 000000 0000100
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
......+|.++|.++|+++||+++++...
T Consensus 186 ~~~~~~~t~~~~~~~l~~aGF~~~~~~~~ 214 (243)
T 3bkw_A 186 GVVKHHRTVGTTLNALIRSGFAIEHVEEF 214 (243)
T ss_dssp SCCEEECCHHHHHHHHHHTTCEEEEEEEC
T ss_pred ceEEEeccHHHHHHHHHHcCCEeeeeccC
Confidence 00123468999999999999999988754
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.61 E-value=2e-15 Score=134.27 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=109.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCCC--CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPSG--QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~~--D~ 237 (345)
..+.+.++ .....+|||||||+|.++..+++..+. +++++|+ +.+++.++ +++++.+|+.+ +++.+ |+
T Consensus 34 ~~l~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~fD~ 111 (253)
T 3g5l_A 34 HELKKMLP-DFNQKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAIEPDAYNV 111 (253)
T ss_dssp HHHHTTCC-CCTTCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHCCCTTEEEEECCGGGCCCCTTCEEE
T ss_pred HHHHHhhh-ccCCCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhhccCCeEEEEcchhhCCCCCCCeEE
Confidence 34556555 446689999999999999999998765 8999999 88887665 78999999987 66644 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC------------CCCCCchhhhhhhccc-----hhh
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP------------ESPEFSSINRNILTLD-----IVM 300 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~------------~~~~~~~~~~~~~~~d-----~~~ 300 (345)
|++.+++|++++. .++|+++++.|+| ||++++. ..... .........+ ...++ ...
T Consensus 112 v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 184 (253)
T 3g5l_A 112 VLSSLALHYIASF--DDICKKVYINLKS---SGSFIFS-VEHPVFTADGRQDWYTDETGNKLHWPV-DRYFNESMRTSHF 184 (253)
T ss_dssp EEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECHHHHSSSSCSCEECSSCCEEEEEE-CCTTCCCEEEEEE
T ss_pred EEEchhhhhhhhH--HHHHHHHHHHcCC---CcEEEEE-eCCCccccCccccceeccCCceEEEEe-ccccccceEEEee
Confidence 9999999999765 5899999999999 9999886 33210 0000000000 00000 000
Q ss_pred hhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 301 YDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 301 ~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.........+|.++|.++|+++||+++++...
T Consensus 185 ~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~e~ 216 (253)
T 3g5l_A 185 LGEDVQKYHRTVTTYIQTLLKNGFQINSVIEP 216 (253)
T ss_dssp TTEEEEEECCCHHHHHHHHHHTTEEEEEEECC
T ss_pred ccccCccEecCHHHHHHHHHHcCCeeeeeecC
Confidence 00000112359999999999999999998744
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.61 E-value=5.8e-15 Score=125.31 Aligned_cols=129 Identities=19% Similarity=0.240 Sum_probs=105.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~ 240 (345)
.+++.+ .....+|||||||+|.++..+++. +.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++
T Consensus 38 ~~l~~~--~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~D~i~~ 113 (195)
T 3cgg_A 38 RLIDAM--APRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDFPEARWVVGDLSVDQISETDFDLIVS 113 (195)
T ss_dssp HHHHHH--SCTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHCTTSEEEECCTTTSCCCCCCEEEEEE
T ss_pred HHHHHh--ccCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhCCCCcEEEcccccCCCCCCceeEEEE
Confidence 344444 245679999999999999999987 568999999 77877766 79999999988 66643 99999
Q ss_pred c-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 241 K-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 241 ~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
. .++|++++++...+|+++++.|+| ||++++. ... ...++.+++.+++
T Consensus 114 ~~~~~~~~~~~~~~~~l~~~~~~l~~---~G~l~~~-~~~---------------------------~~~~~~~~~~~~l 162 (195)
T 3cgg_A 114 AGNVMGFLAEDGREPALANIHRALGA---DGRAVIG-FGA---------------------------GRGWVFGDFLEVA 162 (195)
T ss_dssp CCCCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EET---------------------------TSSCCHHHHHHHH
T ss_pred CCcHHhhcChHHHHHHHHHHHHHhCC---CCEEEEE-eCC---------------------------CCCcCHHHHHHHH
Confidence 8 899999988889999999999999 9999887 321 1125688999999
Q ss_pred HHCCCCceEEEec
Q 044482 320 MAAGFGTIKVICR 332 (345)
Q Consensus 320 ~~aGf~~~~~~~~ 332 (345)
+++||+++++...
T Consensus 163 ~~~Gf~~~~~~~~ 175 (195)
T 3cgg_A 163 ERVGLELENAFES 175 (195)
T ss_dssp HHHTEEEEEEESS
T ss_pred HHcCCEEeeeecc
Confidence 9999999887544
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.4e-15 Score=131.71 Aligned_cols=146 Identities=14% Similarity=0.068 Sum_probs=106.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCc-CCCCC--CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|+
T Consensus 29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~ 106 (235)
T 3sm3_A 29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAV 106 (235)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEE
T ss_pred CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEE
Confidence 35679999999999999999988 568999999 77776554 36899999987 66543 9999
Q ss_pred eccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc--------C-----
Q 044482 240 TKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF--------P----- 305 (345)
Q Consensus 240 ~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~--------~----- 305 (345)
+..++|++++. ...++|+++++.|+| ||++++. +........ .. ......++...... .
T Consensus 107 ~~~~l~~~~~~~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (235)
T 3sm3_A 107 MQAFLTSVPDPKERSRIIKEVFRVLKP---GAYLYLV-EFGQNWHLK--LY-RKRYLHDFPITKEEGSFLARDPETGETE 179 (235)
T ss_dssp EESCGGGCCCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBCCTTSH--HH-HHHHHHHHHHHCSTTEEEEECTTTCCEE
T ss_pred EcchhhcCCCHHHHHHHHHHHHHHcCC---CeEEEEE-ECCcchhHH--HH-HHHhhhhccchhhhcceEecccccCCcc
Confidence 99999999765 466899999999999 9999999 765432211 00 00000011000000 0
Q ss_pred -CCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 306 -QAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 306 -~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
....++.++|+++|+++||+++++...
T Consensus 180 ~~~~~~~~~~l~~ll~~aGf~~~~~~~~ 207 (235)
T 3sm3_A 180 FIAHHFTEKELVFLLTDCRFEIDYFRVK 207 (235)
T ss_dssp EEEECBCHHHHHHHHHTTTEEEEEEEEE
T ss_pred eeeEeCCHHHHHHHHHHcCCEEEEEEec
Confidence 013579999999999999999988644
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.3e-15 Score=131.98 Aligned_cols=149 Identities=10% Similarity=0.065 Sum_probs=110.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCCC--CEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
...+++.++ .....+|||||||+|.++..+++ |+.+++++|+ |.+++.++ +++++.+|+.+ +++++ |+|+
T Consensus 23 ~~~l~~~~~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~ 99 (261)
T 3ege_A 23 VNAIINLLN-LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVVHPQVEWFTGYAENLALPDKSVDGVI 99 (261)
T ss_dssp HHHHHHHHC-CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCCCTTEEEECCCTTSCCSCTTCBSEEE
T ss_pred HHHHHHHhC-CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHhccCCEEEECchhhCCCCCCCEeEEE
Confidence 345566665 56778999999999999999997 6789999999 88888877 79999999987 66643 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+.+++||+++. ..+|+++++.|+ ||++++. +...+..... +....+.. ..... ....++.+++. +|
T Consensus 100 ~~~~l~~~~~~--~~~l~~~~~~Lk----gG~~~~~-~~~~~~~~~~----~~~~~~~~-~~~~~-~~~~~~~~~~~-~l 165 (261)
T 3ege_A 100 SILAIHHFSHL--EKSFQEMQRIIR----DGTIVLL-TFDIRLAQRI----WLYDYFPF-LWEDA-LRFLPLDEQIN-LL 165 (261)
T ss_dssp EESCGGGCSSH--HHHHHHHHHHBC----SSCEEEE-EECGGGCCCC----GGGGTCHH-HHHHH-HTSCCHHHHHH-HH
T ss_pred EcchHhhccCH--HHHHHHHHHHhC----CcEEEEE-EcCCchhHHH----HHHHHHHH-Hhhhh-hhhCCCHHHHH-HH
Confidence 99999999776 588999999998 4788888 6533221111 11111110 11111 23445678899 99
Q ss_pred HHCCCCceEEEec
Q 044482 320 MAAGFGTIKVICR 332 (345)
Q Consensus 320 ~~aGf~~~~~~~~ 332 (345)
+++||+++++...
T Consensus 166 ~~aGF~~v~~~~~ 178 (261)
T 3ege_A 166 QENTKRRVEAIPF 178 (261)
T ss_dssp HHHHCSEEEEEEC
T ss_pred HHcCCCceeEEEe
Confidence 9999999988765
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-15 Score=127.09 Aligned_cols=139 Identities=14% Similarity=0.075 Sum_probs=107.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.++ .....+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |
T Consensus 23 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 99 (199)
T 2xvm_A 23 EVLEAVK-VVKPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYD 99 (199)
T ss_dssp HHHHHTT-TSCSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEE
T ss_pred HHHHHhh-ccCCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCce
Confidence 3445555 445679999999999999999987 568999999 77777654 68899999987 44334 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|++..++|++++++...+|+++++.|+| ||+++++ +....+....+ . .....++.++++
T Consensus 100 ~v~~~~~l~~~~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~~~~~~~---------------~-~~~~~~~~~~l~ 159 (199)
T 2xvm_A 100 FILSTVVLMFLEAKTIPGLIANMQRCTKP---GGYNLIV-AAMDTADYPCT---------------V-GFPFAFKEGELR 159 (199)
T ss_dssp EEEEESCGGGSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEBCCSSSCCC---------------S-CCSCCBCTTHHH
T ss_pred EEEEcchhhhCCHHHHHHHHHHHHHhcCC---CeEEEEE-EeeccCCcCCC---------------C-CCCCccCHHHHH
Confidence 99999999999988888999999999999 9999988 66544331110 0 022346789999
Q ss_pred HHHHHCCCCceEEEec
Q 044482 317 ALAMAAGFGTIKVICR 332 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~ 332 (345)
+++++ |++++....
T Consensus 160 ~~~~~--f~~~~~~~~ 173 (199)
T 2xvm_A 160 RYYEG--WERVKYNED 173 (199)
T ss_dssp HHTTT--SEEEEEECC
T ss_pred HHhcC--CeEEEeccc
Confidence 99987 988877543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-15 Score=131.90 Aligned_cols=152 Identities=17% Similarity=0.129 Sum_probs=107.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc---CCCCC--CEEE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV---NVPSG--QAIF 239 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~---~~p~~--D~i~ 239 (345)
..+++.++ ....+|||||||+|.++..+++. + .+++++|+ +.+++.++ ..+++.+|+.+ +++++ |+|+
T Consensus 23 ~~l~~~~~--~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~ 98 (230)
T 3cc8_A 23 PNLLKHIK--KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKLDHVVLGDIETMDMPYEEEQFDCVI 98 (230)
T ss_dssp HHHHTTCC--TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTSSEEEESCTTTCCCCSCTTCEEEEE
T ss_pred HHHHHHhc--cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhCCcEEEcchhhcCCCCCCCccCEEE
Confidence 44555554 45579999999999999999988 4 79999999 78888776 35788899875 33433 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhh-hhhccc---hhhhhhcCCCccCCHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINR-NILTLD---IVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~-~~~~~d---~~~~~~~~~~~~rt~~e~ 315 (345)
+.+++||+++. ..+|+++++.|+| ||++++. ....... ..... ...... ....... ....++.++|
T Consensus 99 ~~~~l~~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (230)
T 3cc8_A 99 FGDVLEHLFDP--WAVIEKVKPYIKQ---NGVILAS-IPNVSHI---SVLAPLLAGNWTYTEYGLLDKT-HIRFFTFNEM 168 (230)
T ss_dssp EESCGGGSSCH--HHHHHHTGGGEEE---EEEEEEE-EECTTSH---HHHHHHHTTCCCCBSSSTTBTT-CCCCCCHHHH
T ss_pred ECChhhhcCCH--HHHHHHHHHHcCC---CCEEEEE-eCCcchH---HHHHHHhcCCceeccCCCCCcc-eEEEecHHHH
Confidence 99999999887 4899999999999 9999988 5432110 00000 000000 0000000 2245799999
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||+++++....
T Consensus 169 ~~~l~~~Gf~~~~~~~~~ 186 (230)
T 3cc8_A 169 LRMFLKAGYSISKVDRVY 186 (230)
T ss_dssp HHHHHHTTEEEEEEEEEE
T ss_pred HHHHHHcCCeEEEEEecc
Confidence 999999999999887653
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.4e-15 Score=141.30 Aligned_cols=140 Identities=16% Similarity=0.209 Sum_probs=108.1
Q ss_pred cccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------------CceEEeccCCc-------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------------CVEHVEGDMFV-------NV 232 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------------ri~~~~gd~~~-------~~ 232 (345)
...+|||||||+|.++..+++.+ |+.+++++|+ +.+++.++ +++++.+|+.+ ++
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~ 162 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGV 162 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCC
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCC
Confidence 45789999999999999999987 7889999999 77765432 68899999987 45
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+++ |+|++..++|++++. ..+|++++++|+| ||++++. +.......... ...+....... .+..+
T Consensus 163 ~~~~fD~V~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~~~~~------~~~~~~~~~~~-~~~~~ 229 (383)
T 4fsd_A 163 PDSSVDIVISNCVCNLSTNK--LALFKEIHRVLRD---GGELYFS-DVYADRRLSEA------AQQDPILYGEC-LGGAL 229 (383)
T ss_dssp CTTCEEEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EEEESSCCCHH------HHHCHHHHHTT-CTTCC
T ss_pred CCCCEEEEEEccchhcCCCH--HHHHHHHHHHcCC---CCEEEEE-EeccccccCHh------HhhhHHHhhcc-cccCC
Confidence 543 999999999999886 5899999999999 9999998 76654332111 11111122222 45667
Q ss_pred CHHHHHHHHHHCCCCceEEEe
Q 044482 311 TAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~ 331 (345)
+.++|.++|+++||+++++..
T Consensus 230 ~~~~~~~ll~~aGF~~v~~~~ 250 (383)
T 4fsd_A 230 YLEDFRRLVAEAGFRDVRLVS 250 (383)
T ss_dssp BHHHHHHHHHHTTCCCEEEEE
T ss_pred CHHHHHHHHHHCCCceEEEEe
Confidence 899999999999999887654
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.1e-15 Score=128.37 Aligned_cols=163 Identities=13% Similarity=0.013 Sum_probs=112.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCcC----CC-CC--CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFVN----VP-SG--QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~~----~p-~~--D~ 237 (345)
.+++.+. .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ ++++..+|+.+. .+ .. |+
T Consensus 43 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~ 119 (227)
T 3e8s_A 43 AILLAIL-GRQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAKVPVGKDYDL 119 (227)
T ss_dssp HHHHHHH-HTCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHTCSSCEEECCHHHHHTTCSCCCCCEEE
T ss_pred HHHHHhh-cCCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHhcccccchhhHHhhcccccccCCCccE
Confidence 4555555 445589999999999999999988 568999999 88888776 688888887652 12 22 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-----CCCccCCH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-----PQAKGRTA 312 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-----~~~~~rt~ 312 (345)
|++.+++| +.+. ..+|+++++.|+| ||++++. +............ ............ .....+|.
T Consensus 120 v~~~~~l~-~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (227)
T 3e8s_A 120 ICANFALL-HQDI--IELLSAMRTLLVP---GGALVIQ-TLHPWSVADGDYQ---DGWREESFAGFAGDWQPMPWYFRTL 189 (227)
T ss_dssp EEEESCCC-SSCC--HHHHHHHHHTEEE---EEEEEEE-ECCTTTTCTTCCS---CEEEEECCTTSSSCCCCEEEEECCH
T ss_pred EEECchhh-hhhH--HHHHHHHHHHhCC---CeEEEEE-ecCccccCccccc---cccchhhhhccccCcccceEEEecH
Confidence 99999999 5555 4899999999999 9999998 6644332211100 000000000000 01134699
Q ss_pred HHHHHHHHHCCCCceEEEecC--C----ceEEEEEEcC
Q 044482 313 GEFKALAMAAGFGTIKVICRS--Y----CYWVIEFYKP 344 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~~~--~----~~~vi~~~k~ 344 (345)
++|.++|+++||+++++.... . ...++.++|+
T Consensus 190 ~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~va~k~ 227 (227)
T 3e8s_A 190 ASWLNALDMAGLRLVSLQEPQHPQSAVPQSLLMVAERH 227 (227)
T ss_dssp HHHHHHHHHTTEEEEEEECCCCTTCSSCSCEEEEEEEC
T ss_pred HHHHHHHHHcCCeEEEEecCCCCCCCCceeEEEEeecC
Confidence 999999999999999987532 1 2456666664
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=133.53 Aligned_cols=147 Identities=12% Similarity=0.102 Sum_probs=107.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEe
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFT 240 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~ 240 (345)
.+++.++ .....+|||||||+|.++..+++++|..+++++|+ +.+++.++ +++++.+|+.+ + +.+ |+|++
T Consensus 24 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~d~~~~~-~~~~fD~v~~ 101 (259)
T 2p35_A 24 DLLAQVP-LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPNTNFGKADLATWK-PAQKADLLYA 101 (259)
T ss_dssp HHHTTCC-CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHSTTSEEEECCTTTCC-CSSCEEEEEE
T ss_pred HHHHhcC-CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCCCcEEEECChhhcC-ccCCcCEEEE
Confidence 5666666 56678999999999999999999999999999999 88888775 79999999987 5 543 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch--hhhhh----cCCCccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI--VMYDL----FPQAKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~--~~~~~----~~~~~~rt~~e 314 (345)
.+++|++++. ..+|+++++.|+| ||++++. +.... ..+........... ..-.. ......++.++
T Consensus 102 ~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (259)
T 2p35_A 102 NAVFQWVPDH--LAVLSQLMDQLES---GGVLAVQ-MPDNL---QEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSD 172 (259)
T ss_dssp ESCGGGSTTH--HHHHHHHGGGEEE---EEEEEEE-EECCT---TSHHHHHHHHHHHHSTTGGGC-------CCCCCHHH
T ss_pred eCchhhCCCH--HHHHHHHHHhcCC---CeEEEEE-eCCCC---CcHHHHHHHHHhcCcchHHHhccccccccCCCCHHH
Confidence 9999999765 5789999999999 9999998 64221 11100000000000 00000 00234578999
Q ss_pred HHHHHHHCCCCc
Q 044482 315 FKALAMAAGFGT 326 (345)
Q Consensus 315 ~~~ll~~aGf~~ 326 (345)
|.++|+++||++
T Consensus 173 ~~~~l~~aGf~v 184 (259)
T 2p35_A 173 YFNALSPKSSRV 184 (259)
T ss_dssp HHHHHGGGEEEE
T ss_pred HHHHHHhcCCce
Confidence 999999999964
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.59 E-value=7.3e-16 Score=145.36 Aligned_cols=235 Identities=9% Similarity=-0.075 Sum_probs=142.8
Q ss_pred CCc--hhhhhhcCHHHHHHHHHHHHHhhhhcc--------ccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccc
Q 044482 6 GLH--LFDYASKDARLQNLFNQSMHNHTAIGF--------EELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIEN 75 (345)
Q Consensus 6 g~~--~~~~~~~~~~~~~~f~~~~~l~~a~~l--------~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~r 75 (345)
|++ +=+++.+++.+.... .+++-..++ + ++..| . + +.|.+|||+++++ ++..+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~-ll~~L-~--~-~~t~~eLa~~~g~-------~~~~v~~ 74 (373)
T 2qm3_A 10 GVDLGTENLYFQSNAMKEIV---ERVKTKTKIPVYERSVEN-VLSAV-L--A-SDDIWRIVDLSEE-------PLPLVVA 74 (373)
T ss_dssp -------CTTTSCCHHHHHH---HHHHTTCSSCCCHHHHHH-HHHHH-H--H-CSCHHHHHHHHTS-------CHHHHHH
T ss_pred ccccCcccchhhhhHHHHHH---HHHHHhcCccHhHHHHHH-HHHHh-c--C-CCCHHHHHHHhCC-------ChHHHHH
Confidence 554 334455555554433 334455666 7 88888 4 2 5899999999999 7899999
Q ss_pred cCCCCccCceeeEEeEeeecCCCccc-cccchhhhhhhhhc-cccc-hhhhhchHHHHHHHh---HhcCcchhhhhcc-C
Q 044482 76 ASSSPVSRNISTIDVVMYNLFPGAKE-RTMEEFNALAIGAG-FGTI-KVICRAYCYWVIEFY---KTMHIMDCIYLTM-L 148 (345)
Q Consensus 76 lL~~L~~~gl~~~~~~~y~~t~~s~~-l~~~~~~~~~~~~~-~~~~-~~~~~~~~~l~~~~~---~~~g~~~~~~~~~-~ 148 (345)
+|+.|++.|+++..++ |++|+.+.. +...++.+..+.+. .+.. ...+..|.....++. ..+...... +.+ .
T Consensus 75 ~L~~l~~~gll~~~~~-~~lt~~~~~~l~~~~~~~~~~~~~~~~~g~g~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~ 152 (373)
T 2qm3_A 75 ILESLNELGYVTFEDG-VKLTEKGEELVAEYGIGKRYDFTCPHCQGKTVDLQAFADLLEQFREIVKDRPEPLHE-FDQAY 152 (373)
T ss_dssp HHHHHHHTTSEECSSS-SEECHHHHHHHHHHTCCCCCC------------CGGGHHHHHHHHHHHTTCCCCCGG-GTCCC
T ss_pred HHHHHhhCCcEEECCC-EEECHHHHHHHHhcCccccccccchhhcCCCcchhhhHHHHHHHHHHHhcCCccchh-cCCee
Confidence 9999999999987654 999998766 44322211111110 0000 111222221111111 111111111 111 1
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------
Q 044482 149 PMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------- 219 (345)
Q Consensus 149 ~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------- 219 (345)
+.........+ ..... . .....+||||| |+|.++..+++..|+.+++++|+ |.+++.++
T Consensus 153 ~~~~~~~~~~l---------~~~~~-~-~~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~ 220 (373)
T 2qm3_A 153 VTPETTVARVI---------LMHTR-G-DLENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGY 220 (373)
T ss_dssp BCHHHHHHHHH---------HHHHT-T-CSTTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHH---------HHhhc-C-CCCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence 11001111100 01111 1 12357999999 99999999999999889999999 88888766
Q ss_pred -CceEEeccCCcCCCC----C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 -CVEHVEGDMFVNVPS----G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 -ri~~~~gd~~~~~p~----~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++++.+|+.+++|. . |+|++...+|... ...+|++++++|+| ||++++.
T Consensus 221 ~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p~~~~~---~~~~l~~~~~~Lkp---gG~~~~~ 276 (373)
T 2qm3_A 221 EDIEIFTFDLRKPLPDYALHKFDTFITDPPETLEA---IRAFVGRGIATLKG---PRCAGYF 276 (373)
T ss_dssp CCEEEECCCTTSCCCTTTSSCBSEEEECCCSSHHH---HHHHHHHHHHTBCS---TTCEEEE
T ss_pred CCEEEEEChhhhhchhhccCCccEEEECCCCchHH---HHHHHHHHHHHccc---CCeEEEE
Confidence 589999999885552 3 9999988776542 47899999999999 9977666
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.5e-15 Score=133.07 Aligned_cols=151 Identities=14% Similarity=0.083 Sum_probs=110.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC-CEEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
..+++.++ .....+|||||||+|.++..+++ |..+++++|+ +.+++.++ +++++.+|+.+ +++.. |+|++
T Consensus 47 ~~l~~~l~-~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~fD~v~~ 123 (279)
T 3ccf_A 47 EDLLQLLN-PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNYPHLHFDVADARNFRVDKPLDAVFS 123 (279)
T ss_dssp CHHHHHHC-CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHCTTSCEEECCTTTCCCSSCEEEEEE
T ss_pred HHHHHHhC-CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhCCCCEEEECChhhCCcCCCcCEEEE
Confidence 34555555 55668999999999999999998 7889999999 88888776 79999999987 54444 99999
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhh-h-----hhcCCCccCCHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVM-Y-----DLFPQAKGRTAGE 314 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~-~-----~~~~~~~~rt~~e 314 (345)
.+++|++++. ..+|++++++|+| ||++++. ....... ... ......... . ........++.++
T Consensus 124 ~~~l~~~~d~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (279)
T 3ccf_A 124 NAMLHWVKEP--EAAIASIHQALKS---GGRFVAE-FGGKGNI--KYI---LEALYNALETLGIHNPQALNPWYFPSIGE 192 (279)
T ss_dssp ESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECTTTT--HHH---HHHHHHHHHHHTCCCGGGGCCCCCCCHHH
T ss_pred cchhhhCcCH--HHHHHHHHHhcCC---CcEEEEE-ecCCcch--HHH---HHHHHHHHHhcCCccccCcCceeCCCHHH
Confidence 9999999876 4789999999999 9999987 5432211 000 001100000 0 0000123568999
Q ss_pred HHHHHHHCCCCceEEEec
Q 044482 315 FKALAMAAGFGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~ 332 (345)
|.++|+++||+++++...
T Consensus 193 ~~~~l~~aGf~~~~~~~~ 210 (279)
T 3ccf_A 193 YVNILEKQGFDVTYAALF 210 (279)
T ss_dssp HHHHHHHHTEEEEEEEEE
T ss_pred HHHHHHHcCCEEEEEEEe
Confidence 999999999999877654
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.4e-15 Score=133.06 Aligned_cols=153 Identities=14% Similarity=0.059 Sum_probs=108.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C-CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N-VPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~-~p~ 234 (345)
..+++.++ . ...+|||||||+|.++..+++. +.+++++|+ +.+++.++ +++++.+|+.+ + ++.
T Consensus 59 ~~~l~~~~-~-~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 134 (285)
T 4htf_A 59 DRVLAEMG-P-QKLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLE 134 (285)
T ss_dssp HHHHHHTC-S-SCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCS
T ss_pred HHHHHhcC-C-CCCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcC
Confidence 34555555 2 3579999999999999999988 568999999 78877665 58899999987 3 444
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh-------hcC
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD-------LFP 305 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~-------~~~ 305 (345)
+ |+|++.+++||+++. ..+|+++++.|+| ||++++. +....... .........+..... ...
T Consensus 135 ~~fD~v~~~~~l~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (285)
T 4htf_A 135 TPVDLILFHAVLEWVADP--RSVLQTLWSVLRP---GGVLSLM-FYNAHGLL---MHNMVAGNFDYVQAGMPKKKKRTLS 205 (285)
T ss_dssp SCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEE-EEBHHHHH---HHHHHTTCHHHHHTTCCCC----CC
T ss_pred CCceEEEECchhhcccCH--HHHHHHHHHHcCC---CeEEEEE-EeCCchHH---HHHHHhcCHHHHhhhccccccccCC
Confidence 3 999999999999877 5799999999999 9999998 54321100 000000000000000 000
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
....++.+++.++|+++||+++++..+.
T Consensus 206 ~~~~~~~~~l~~~l~~aGf~v~~~~~~~ 233 (285)
T 4htf_A 206 PDYPRDPTQVYLWLEEAGWQIMGKTGVR 233 (285)
T ss_dssp CSCCBCHHHHHHHHHHTTCEEEEEEEES
T ss_pred CCCCCCHHHHHHHHHHCCCceeeeeeEE
Confidence 2345789999999999999999887653
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-14 Score=124.88 Aligned_cols=135 Identities=16% Similarity=0.048 Sum_probs=100.8
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc-CCCCC--CEEEeccccccCChhHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCL 253 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~ 253 (345)
..+|||||||+|.++..++++ +++|. +.+++.++ +++++.+|+.+ +++.+ |+|++.+++|++++. .
T Consensus 48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~~~~--~ 119 (219)
T 1vlm_A 48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP--E 119 (219)
T ss_dssp SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--H
T ss_pred CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhcCCEEEEcccccCCCCCCCeeEEEEcchHhhccCH--H
Confidence 579999999999999988765 89998 88888777 79999999887 66543 999999999999876 4
Q ss_pred HHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 254 KILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 254 ~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.+|+++++.|+| ||++++. +.... ......... .. ...........++.++|.++|+++||+++++...
T Consensus 120 ~~l~~~~~~L~p---gG~l~i~-~~~~~----~~~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~~~ 188 (219)
T 1vlm_A 120 RALKEAYRILKK---GGYLIVG-IVDRE----SFLGREYEK-NK-EKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQT 188 (219)
T ss_dssp HHHHHHHHHEEE---EEEEEEE-EECSS----SHHHHHHHH-TT-TC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred HHHHHHHHHcCC---CcEEEEE-EeCCc----cHHHHHHHH-Hh-cCcchhcccccCCHHHHHHHHHHCCCeEEEEecc
Confidence 899999999999 9999998 64321 111000000 00 0000111234579999999999999999888655
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.55 E-value=1.5e-14 Score=129.06 Aligned_cols=144 Identities=12% Similarity=0.043 Sum_probs=101.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vl 244 (345)
.....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +++++ |+|++.+++
T Consensus 37 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l 114 (263)
T 2yqz_A 37 KGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPLPDESVHGVIVVHLW 114 (263)
T ss_dssp SSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCCSCTTCEEEEEEESCG
T ss_pred CCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCCCCCCCeeEEEECCch
Confidence 556689999999999999999987 468999999 77776543 79999999987 66644 999999999
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC---CCccCCHHHHHHHHHH
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP---QAKGRTAGEFKALAMA 321 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~rt~~e~~~ll~~ 321 (345)
|++++. ..+|+++++.|+| ||++++. -. .....+..........+......+ ....++.+++.++|++
T Consensus 115 ~~~~~~--~~~l~~~~~~L~p---gG~l~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 185 (263)
T 2yqz_A 115 HLVPDW--PKVLAEAIRVLKP---GGALLEG-WD---QAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRR 185 (263)
T ss_dssp GGCTTH--HHHHHHHHHHEEE---EEEEEEE-EE---EECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHH
T ss_pred hhcCCH--HHHHHHHHHHCCC---CcEEEEE-ec---CCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHH
Confidence 999875 5789999999999 9988776 11 111111000011111111000000 1134678899999999
Q ss_pred CCCCceEEEe
Q 044482 322 AGFGTIKVIC 331 (345)
Q Consensus 322 aGf~~~~~~~ 331 (345)
+||+++.+..
T Consensus 186 ~Gf~~~~~~~ 195 (263)
T 2yqz_A 186 LGLKPRTREV 195 (263)
T ss_dssp TTCCCEEEEE
T ss_pred cCCCcceEEE
Confidence 9999876643
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=5e-15 Score=134.95 Aligned_cols=154 Identities=15% Similarity=0.225 Sum_probs=106.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------------------------- 219 (345)
...+|||||||+|.++..+++++|..+++++|+ +.+++.|+
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 567999999999999999999999999999999 77776543
Q ss_pred -----------------------------CceEEeccCCcCC------CC-C-CEEEeccccccC----ChhHHHHHHHH
Q 044482 220 -----------------------------CVEHVEGDMFVNV------PS-G-QAIFTKSVLLNW----SDEQCLKILKN 258 (345)
Q Consensus 220 -----------------------------ri~~~~gd~~~~~------p~-~-D~i~~~~vlh~~----~d~~~~~iL~~ 258 (345)
+++|+.+|+.... +. . |+|++..+++++ +++...++|++
T Consensus 126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~~~~~~l~~ 205 (292)
T 3g07_A 126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDEGLKRMFRR 205 (292)
T ss_dssp ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHHHHHHHHHH
Confidence 4889999998632 33 3 999999999665 77788999999
Q ss_pred HHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH--CCCCceEEEecC---
Q 044482 259 CYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA--AGFGTIKVICRS--- 333 (345)
Q Consensus 259 ~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~--aGf~~~~~~~~~--- 333 (345)
+++.|+| ||+|++. ..-... . ......... ..... .......+++.++|.+ +||+.+++....
T Consensus 206 ~~~~Lkp---GG~lil~-~~~~~~-----y-~~~~~~~~~-~~~~~-~~~~~~p~~~~~~L~~~~~GF~~~~~~~~~~~~ 273 (292)
T 3g07_A 206 IYRHLRP---GGILVLE-PQPWSS-----Y-GKRKTLTET-IYKNY-YRIQLKPEQFSSYLTSPDVGFSSYELVATPHNT 273 (292)
T ss_dssp HHHHEEE---EEEEEEE-CCCHHH-----H-HTTTTSCHH-HHHHH-HHCCCCGGGHHHHHTSTTTCCCEEEEC------
T ss_pred HHHHhCC---CcEEEEe-cCCchh-----h-hhhhcccHH-HHhhh-hcEEEcHHHHHHHHHhcCCCceEEEEeccCCCC
Confidence 9999999 9988887 321110 0 000000000 00011 1223447899999999 999988876542
Q ss_pred ---CceEEEEEEcC
Q 044482 334 ---YCYWVIEFYKP 344 (345)
Q Consensus 334 ---~~~~vi~~~k~ 344 (345)
....+...+|+
T Consensus 274 ~~g~~r~i~~~~k~ 287 (292)
T 3g07_A 274 SKGFQRPVYLFHKA 287 (292)
T ss_dssp -----CCCEEEECC
T ss_pred CCCccceEEEEEcC
Confidence 12345555553
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=124.19 Aligned_cols=132 Identities=14% Similarity=0.056 Sum_probs=102.9
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
.+++.+.......+|||||||+|.++..++ .+++++|+.+. +++++.+|+.+ +++.+ |+|++.+++|
T Consensus 57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-----~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 126 (215)
T 2zfu_A 57 RIARDLRQRPASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-----DPRVTVCDMAQVPLEDESVDVAVFCLSLM 126 (215)
T ss_dssp HHHHHHHTSCTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-----STTEEESCTTSCSCCTTCEEEEEEESCCC
T ss_pred HHHHHHhccCCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-----CceEEEeccccCCCCCCCEeEEEEehhcc
Confidence 344444323456799999999999998873 57999998433 68899999988 66644 9999999998
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
+.+ ...+|+++++.|+| ||++++. +.... ..+.++|.++++++||+
T Consensus 127 -~~~--~~~~l~~~~~~L~~---gG~l~i~-~~~~~---------------------------~~~~~~~~~~l~~~Gf~ 172 (215)
T 2zfu_A 127 -GTN--IRDFLEEANRVLKP---GGLLKVA-EVSSR---------------------------FEDVRTFLRAVTKLGFK 172 (215)
T ss_dssp -SSC--HHHHHHHHHHHEEE---EEEEEEE-ECGGG---------------------------CSCHHHHHHHHHHTTEE
T ss_pred -ccC--HHHHHHHHHHhCCC---CeEEEEE-EcCCC---------------------------CCCHHHHHHHHHHCCCE
Confidence 444 36899999999999 9999998 53210 01689999999999999
Q ss_pred ceEEEecCCceEEEEEEcC
Q 044482 326 TIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 326 ~~~~~~~~~~~~vi~~~k~ 344 (345)
+++.....+...++.++|+
T Consensus 173 ~~~~~~~~~~~~~~~~~k~ 191 (215)
T 2zfu_A 173 IVSKDLTNSHFFLFDFQKT 191 (215)
T ss_dssp EEEEECCSTTCEEEEEEEC
T ss_pred EEEEecCCCeEEEEEEEec
Confidence 9887766667788888875
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-14 Score=127.66 Aligned_cols=145 Identities=16% Similarity=0.120 Sum_probs=106.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC-------CCEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS-------GQAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~-------~D~i~~~ 241 (345)
.....+|||||||+|.++..+++..+ +++++|+ +.+++.++ +++++.+|+.+ +.+. .|+|++.
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~ 131 (245)
T 3ggd_A 54 FNPELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKENTAANISYRLLDGLVPEQAAQIHSEIGDANIYMR 131 (245)
T ss_dssp SCTTSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHSCCTTEEEEECCTTCHHHHHHHHHHHCSCEEEEE
T ss_pred cCCCCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhCcccCceEEECcccccccccccccccCccEEEEc
Confidence 34567899999999999999999988 7999998 78887665 79999999987 3321 3899999
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh-----hccchhhhhhc-CCCccCCHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI-----LTLDIVMYDLF-PQAKGRTAGEF 315 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~-----~~~d~~~~~~~-~~~~~rt~~e~ 315 (345)
.++|++++++...+|++++++|+| ||+++|. +...++.. ...... ....+...... .....++.+++
T Consensus 132 ~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (245)
T 3ggd_A 132 TGFHHIPVEKRELLGQSLRILLGK---QGAMYLI-ELGTGCID---FFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDI 204 (245)
T ss_dssp SSSTTSCGGGHHHHHHHHHHHHTT---TCEEEEE-EECTTHHH---HHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHH
T ss_pred chhhcCCHHHHHHHHHHHHHHcCC---CCEEEEE-eCCccccH---HHHHHHhCCCCCchhhhhccccCCCCCccCHHHH
Confidence 999999988888999999999999 9999999 77543210 000000 00000000000 01234689999
Q ss_pred HHHHHHCCCCceEEEec
Q 044482 316 KALAMAAGFGTIKVICR 332 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~ 332 (345)
.+++ +||+++.....
T Consensus 205 ~~~~--aGf~~~~~~~~ 219 (245)
T 3ggd_A 205 ELYF--PDFEILSQGEG 219 (245)
T ss_dssp HHHC--TTEEEEEEECC
T ss_pred HHHh--CCCEEEecccc
Confidence 9999 99999876544
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-13 Score=120.85 Aligned_cols=101 Identities=18% Similarity=0.276 Sum_probs=82.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~ 237 (345)
.+++... .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+
T Consensus 32 ~~~~~~~-~~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~fD~ 108 (252)
T 1wzn_A 32 EIFKEDA-KREVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDA 108 (252)
T ss_dssp HHHHHTC-SSCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEEE
T ss_pred HHHHHhc-ccCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEECChhhcccCCCccE
Confidence 4444443 345579999999999999999986 568999999 88887665 58999999988 55544 99
Q ss_pred EEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++. ..+|+++.++..++|+++++.|+| ||.+++.
T Consensus 109 v~~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~li~~ 144 (252)
T 1wzn_A 109 VTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (252)
T ss_dssp EEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEcCCchhcCCHHHHHHHHHHHHHHcCC---CeEEEEe
Confidence 9986 567788888889999999999999 9988764
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=4e-14 Score=128.88 Aligned_cols=136 Identities=13% Similarity=-0.022 Sum_probs=93.0
Q ss_pred cccceEEecCCccHHHH----HHHHHCCCCeE--EEeeh-hhHhhhCC----------Cc--eEEeccCCc-C------C
Q 044482 179 ELKKLVDVASCLGANMS----LIVNTYPQITG--INFDL-PYVIKNAP----------CV--EHVEGDMFV-N------V 232 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~----~l~~~~p~~~~--~~~Dl-p~~i~~a~----------ri--~~~~gd~~~-~------~ 232 (345)
...+|||||||+|.++. .++.++|+.++ +++|. ++|++.++ ++ .+..++..+ + +
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 45689999999997654 45567788854 99998 88887554 23 334555533 2 2
Q ss_pred CCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC---CC
Q 044482 233 PSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP---QA 307 (345)
Q Consensus 233 p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~ 307 (345)
+++ |+|++.++|||++|.. +.|+++++.||| ||++++. +... + .... ....-. ....+ ..
T Consensus 132 ~~~~fD~V~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~-~~~~--~--~~~~----~~~~~~-~~~~~~~~~~ 196 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYVKDIP--ATLKFFHSLLGT---NAKMLII-VVSG--S--SGWD----KLWKKY-GSRFPQDDLC 196 (292)
T ss_dssp CCCCEEEEEEESCGGGCSCHH--HHHHHHHHTEEE---EEEEEEE-EECT--T--SHHH----HHHHHH-GGGSCCCTTC
T ss_pred CCCceeEEEEeeeeeecCCHH--HHHHHHHHHcCC---CcEEEEE-EecC--C--ccHH----HHHHHH-HHhccCCCcc
Confidence 333 9999999999999874 789999999999 9999998 5421 1 1110 000000 00110 12
Q ss_pred ccCCHHHHHHHHHHCCCCceEE
Q 044482 308 KGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
..++.++|.++|+++||++++.
T Consensus 197 ~~~~~~~~~~~l~~aGf~~~~~ 218 (292)
T 2aot_A 197 QYITSDDLTQMLDNLGLKYECY 218 (292)
T ss_dssp CCCCHHHHHHHHHHHTCCEEEE
T ss_pred cCCCHHHHHHHHHHCCCceEEE
Confidence 4578999999999999998764
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.7e-14 Score=129.79 Aligned_cols=94 Identities=16% Similarity=0.135 Sum_probs=80.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc-C---CCCC--C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV-N---VPSG--Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~-~---~p~~--D 236 (345)
..+..+|||||||+|.++..++++.+ +++++|+ +.+++.++ ++.+..+|+.+ + ++.+ |
T Consensus 55 ~~~~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD 132 (293)
T 3thr_A 55 QHGCHRVLDVACGTGVDSIMLVEEGF--SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 132 (293)
T ss_dssp HTTCCEEEETTCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHCCC--eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeE
Confidence 34557999999999999999999844 8999999 77877663 67889999887 5 5543 9
Q ss_pred EEEec-cccccCCh-----hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTK-SVLLNWSD-----EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~-~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++. +++||+++ ++..++|+++++.|+| ||++++.
T Consensus 133 ~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 174 (293)
T 3thr_A 133 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID 174 (293)
T ss_dssp EEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCC---CeEEEEE
Confidence 99998 99999998 7778999999999999 9999877
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=125.15 Aligned_cols=146 Identities=7% Similarity=-0.073 Sum_probs=103.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
....+|||||||+|.++..++.. ++.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++.+++|
T Consensus 22 ~~~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~ 100 (209)
T 2p8j_A 22 NLDKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLPFKDESMSFVYSYGTIF 100 (209)
T ss_dssp SSCSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCCSCTTCEEEEEECSCGG
T ss_pred CCCCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCCCCCCceeEEEEcChHH
Confidence 34579999999999986555544 5679999999 78877665 68999999988 66643 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCCHHHHHHHHHHCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt~~e~~~ll~~aGf 324 (345)
|++.++..++|+++++.|+| ||++++. +...++.............+.. ..... ..+..++.+++.++++++||
T Consensus 101 ~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~e~~~~~~~~g~ 175 (209)
T 2p8j_A 101 HMRKNDVKEAIDEIKRVLKP---GGLACIN-FLTTKDERYNKGEKIGEGEFLQ-LERGEKVIHSYVSLEEADKYFKDMKV 175 (209)
T ss_dssp GSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEETTSTTTTCSEEEETTEEEE-CC-CCCEEEEEECHHHHHHTTTTSEE
T ss_pred hCCHHHHHHHHHHHHHHcCC---CcEEEEE-Eecccchhccchhhhcccccee-ccCCCceeEEecCHHHHHHHHhhcCc
Confidence 99888889999999999999 9999998 7655433211000000000000 00000 01245689999999999998
Q ss_pred CceEE
Q 044482 325 GTIKV 329 (345)
Q Consensus 325 ~~~~~ 329 (345)
...+.
T Consensus 176 ~~~~~ 180 (209)
T 2p8j_A 176 LFKED 180 (209)
T ss_dssp EEEEE
T ss_pred eeeee
Confidence 76544
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.50 E-value=7.1e-14 Score=126.65 Aligned_cols=136 Identities=15% Similarity=0.113 Sum_probs=103.5
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAI 238 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i 238 (345)
+++.++ .....+|||||||+|.++..++++ +.+++++|+ +.+++.++ +++++.+|+.+ +.+.. |+|
T Consensus 112 ~~~~~~-~~~~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~i 188 (286)
T 3m70_A 112 VVDAAK-IISPCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKENLNISTALYDINAANIQENYDFI 188 (286)
T ss_dssp HHHHHH-HSCSCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCCCCSCEEEE
T ss_pred HHHHhh-ccCCCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHcCCceEEEEeccccccccCCccEE
Confidence 344444 345679999999999999999988 558999999 77777665 68999999988 44333 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
++..++|+++++....+|+++++.|+| ||.++++ .....+....+ . .....++.++++++
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~---------------~-~~~~~~~~~~l~~~ 248 (286)
T 3m70_A 189 VSTVVFMFLNRERVPSIIKNMKEHTNV---GGYNLIV-AAMSTDDVPCP---------------L-PFSFTFAENELKEY 248 (286)
T ss_dssp EECSSGGGSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEBCCSSSCCS---------------S-CCSCCBCTTHHHHH
T ss_pred EEccchhhCCHHHHHHHHHHHHHhcCC---CcEEEEE-EecCCCCCCCC---------------C-CccccCCHHHHHHH
Confidence 999999999999889999999999999 9998887 55443321110 0 01234567888888
Q ss_pred HHHCCCCceEEE
Q 044482 319 AMAAGFGTIKVI 330 (345)
Q Consensus 319 l~~aGf~~~~~~ 330 (345)
++. |++++..
T Consensus 249 ~~~--~~~~~~~ 258 (286)
T 3m70_A 249 YKD--WEFLEYN 258 (286)
T ss_dssp TTT--SEEEEEE
T ss_pred hcC--CEEEEEE
Confidence 865 8877664
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=7.1e-14 Score=124.76 Aligned_cols=148 Identities=12% Similarity=-0.010 Sum_probs=108.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C------------------------------ 220 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r------------------------------ 220 (345)
....+|||||||+|.++..+++..+ .+++++|+ +.+++.++ .
T Consensus 55 ~~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 133 (265)
T 2i62_A 55 VKGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLR 133 (265)
T ss_dssp CCEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHH
T ss_pred cCCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhh
Confidence 4457899999999999999988776 58999999 77777664 1
Q ss_pred --c-eEEeccCCcC--CCC---C--CEEEeccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch
Q 044482 221 --V-EHVEGDMFVN--VPS---G--QAIFTKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS 288 (345)
Q Consensus 221 --i-~~~~gd~~~~--~p~---~--D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~ 288 (345)
+ +++.+|+.+. .+. + |+|++..+||++++. +...+|+++++.|+| ||++++. +..... .
T Consensus 134 ~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~~~~~-----~ 204 (265)
T 2i62_A 134 RAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKP---GGFLVMV-DALKSS-----Y 204 (265)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EESSCC-----E
T ss_pred hhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCC---CcEEEEE-ecCCCc-----e
Confidence 7 8999999873 233 3 999999999955433 567899999999999 9999999 643221 0
Q ss_pred hhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC----------ceEEEEEEcC
Q 044482 289 INRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY----------CYWVIEFYKP 344 (345)
Q Consensus 289 ~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~----------~~~vi~~~k~ 344 (345)
. ..-+. .. .....+.+++.++|+++||+++++...+. ...++.++|+
T Consensus 205 ---~-~~~~~----~~-~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~~~~a~K~ 261 (265)
T 2i62_A 205 ---Y-MIGEQ----KF-SSLPLGWETVRDAVEEAGYTIEQFEVISQNYSSTTSNNEGLFSLVGRKP 261 (265)
T ss_dssp ---E-EETTE----EE-ECCCCCHHHHHHHHHHTTCEEEEEEEECCCCCTTTBCCCCEEEEEEECC
T ss_pred ---E-EcCCc----cc-cccccCHHHHHHHHHHCCCEEEEEEEecccCCccccccceEEEEEeccc
Confidence 0 00000 00 12245789999999999999998876541 3456777775
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.48 E-value=5.2e-14 Score=126.21 Aligned_cols=149 Identities=15% Similarity=0.032 Sum_probs=104.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------------------- 219 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------------------- 219 (345)
....+|||||||+|.++..++...- .+++++|+ +.+++.++
T Consensus 54 ~~g~~vLDiGCG~G~~~~~~~~~~~-~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~ 132 (263)
T 2a14_A 54 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 132 (263)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCceEEEeCCCccHHHHHHHHhhh-cceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHH
Confidence 3457899999999988776554431 26999999 77777543
Q ss_pred -Cce-EEeccCCcCCC-----C-C-CEEEeccccccCC--hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch
Q 044482 220 -CVE-HVEGDMFVNVP-----S-G-QAIFTKSVLLNWS--DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS 288 (345)
Q Consensus 220 -ri~-~~~gd~~~~~p-----~-~-D~i~~~~vlh~~~--d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~ 288 (345)
+++ ++.+|+.+..| . . |+|+++.+||+.. .++..++|++++++||| ||++++. +......
T Consensus 133 ~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~LKP---GG~li~~-~~~~~~~----- 203 (263)
T 2a14_A 133 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTT-VTLRLPS----- 203 (263)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EESSCCE-----
T ss_pred hhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHcCC---CcEEEEE-EeecCcc-----
Confidence 122 88999987322 2 2 9999999999853 35667899999999999 9999999 6542210
Q ss_pred hhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC----------CceEEEEEEcCC
Q 044482 289 INRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS----------YCYWVIEFYKPK 345 (345)
Q Consensus 289 ~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~----------~~~~vi~~~k~~ 345 (345)
....- ... .....+.+++.++|+++||+++++...+ ....++.|+|++
T Consensus 204 -----~~~g~---~~~-~~~~~~~~~l~~~l~~aGF~i~~~~~~~~~~~~~~~~~~~~~~~~a~K~~ 261 (263)
T 2a14_A 204 -----YMVGK---REF-SCVALEKGEVEQAVLDAGFDIEQLLHSPQSYSVTNAANNGVCCIVARKKP 261 (263)
T ss_dssp -----EEETT---EEE-ECCCCCHHHHHHHHHHTTEEEEEEEEECCCCCTTTCCCCCEEEEEEEECC
T ss_pred -----ceeCC---eEe-eccccCHHHHHHHHHHCCCEEEEEeecccccccccCCCCceEEEEEEecC
Confidence 00000 000 1124589999999999999998886643 135677888863
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.5e-13 Score=112.08 Aligned_cols=126 Identities=17% Similarity=0.162 Sum_probs=99.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCcCCCCC--CEEEeccccccCChh-----
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDE----- 250 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~----- 250 (345)
...+|||||||+|.++..++++. +++++|+ +.+++...+++++.+|+.++++.+ |+|+++..+|..++.
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~~~~~~~~~~ 99 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALESHRGGNLVRADLLCSINQESVDVVVFNPPYVPDTDDPIIGG 99 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHTCSSSCEEECSTTTTBCGGGCSEEEECCCCBTTCCCTTTBC
T ss_pred CCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhcccCCeEEECChhhhcccCCCCEEEECCCCccCCccccccC
Confidence 44699999999999999999987 8999999 888888559999999999866633 999999888866554
Q ss_pred --HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 251 --QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 251 --~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
+...+++++.+.+ | ||++++. +... .+.+++.++++++||+.++
T Consensus 100 ~~~~~~~~~~~~~~l-p---gG~l~~~-~~~~-----------------------------~~~~~l~~~l~~~gf~~~~ 145 (170)
T 3q87_B 100 GYLGREVIDRFVDAV-T---VGMLYLL-VIEA-----------------------------NRPKEVLARLEERGYGTRI 145 (170)
T ss_dssp CGGGCHHHHHHHHHC-C---SSEEEEE-EEGG-----------------------------GCHHHHHHHHHHTTCEEEE
T ss_pred CcchHHHHHHHHhhC-C---CCEEEEE-EecC-----------------------------CCHHHHHHHHHHCCCcEEE
Confidence 3467889999999 9 9999998 3100 1367889999999999888
Q ss_pred EEecC-CceEEEEE
Q 044482 329 VICRS-YCYWVIEF 341 (345)
Q Consensus 329 ~~~~~-~~~~vi~~ 341 (345)
+.... +...++..
T Consensus 146 ~~~~~~~~e~~~~~ 159 (170)
T 3q87_B 146 LKVRKILGETVYII 159 (170)
T ss_dssp EEEEECSSSEEEEE
T ss_pred EEeeccCCceEEEE
Confidence 76553 33344433
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-13 Score=123.85 Aligned_cols=150 Identities=10% Similarity=-0.058 Sum_probs=105.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CC-CCC--CEEEecc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NV-PSG--QAIFTKS 242 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~-p~~--D~i~~~~ 242 (345)
....+|||||||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+ ++ +.+ |+|++..
T Consensus 63 ~~~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~ 141 (298)
T 1ri5_A 63 KRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQF 141 (298)
T ss_dssp CTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEES
T ss_pred CCCCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECc
Confidence 45679999999999999998876 5568999999 78877665 47999999988 66 333 9999999
Q ss_pred cccc--CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC---------CCCchh---------hh-hhhccchhhh
Q 044482 243 VLLN--WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES---------PEFSSI---------NR-NILTLDIVMY 301 (345)
Q Consensus 243 vlh~--~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~---------~~~~~~---------~~-~~~~~d~~~~ 301 (345)
++|+ .+.++...+|+++++.|+| ||++++. ....... ...... .. ......+...
T Consensus 142 ~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~ 217 (298)
T 1ri5_A 142 SFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT-VPSRDVILERYKQGRMSNDFYKIELEKMEDVPMESVREYRFTLL 217 (298)
T ss_dssp CGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE-EECHHHHHHHHHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEET
T ss_pred hhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEE-ECCHHHHHHHHccCccCCeeEEEEeCccccccccccceEEEEEc
Confidence 9998 6777788999999999999 9999988 5321100 000000 00 0000000000
Q ss_pred hhc--CCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 302 DLF--PQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 302 ~~~--~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
... .....++.++++++++++||+++++...
T Consensus 218 ~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 218 DSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp TSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred hhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 000 0123468999999999999999988764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=5.8e-14 Score=134.16 Aligned_cols=152 Identities=13% Similarity=0.075 Sum_probs=107.5
Q ss_pred hHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEec-----cCCc-CCC
Q 044482 163 TAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEG-----DMFV-NVP 233 (345)
Q Consensus 163 ~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~g-----d~~~-~~p 233 (345)
.......+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ ++..... +... +++
T Consensus 92 ~~~~~~~l~~~~~-~~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~ 168 (416)
T 4e2x_A 92 FAMLARDFLATEL-TGPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVRRT 168 (416)
T ss_dssp HHHHHHHHHHTTT-CSSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcccC
Confidence 3344556777776 6677899999999999999999874 48999999 78888776 3333332 2211 223
Q ss_pred -CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCC
Q 044482 234 -SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRT 311 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt 311 (345)
.. |+|++.++|||+++. ..+|+++++.|+| ||++++. ....... . ....++.. . ......++
T Consensus 169 ~~~fD~I~~~~vl~h~~d~--~~~l~~~~r~Lkp---gG~l~i~-~~~~~~~-----~--~~~~~~~~--~-~~~~~~~s 232 (416)
T 4e2x_A 169 EGPANVIYAANTLCHIPYV--QSVLEGVDALLAP---DGVFVFE-DPYLGDI-----V--AKTSFDQI--F-DEHFFLFS 232 (416)
T ss_dssp HCCEEEEEEESCGGGCTTH--HHHHHHHHHHEEE---EEEEEEE-EECHHHH-----H--HHTCGGGC--S-TTCCEECC
T ss_pred CCCEEEEEECChHHhcCCH--HHHHHHHHHHcCC---CeEEEEE-eCChHHh-----h--hhcchhhh--h-hhhhhcCC
Confidence 23 999999999999865 5899999999999 9999887 4332110 0 00011110 0 11344578
Q ss_pred HHHHHHHHHHCCCCceEEEecC
Q 044482 312 AGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 312 ~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.++|+++++++||+++++...+
T Consensus 233 ~~~l~~ll~~aGf~~~~~~~~~ 254 (416)
T 4e2x_A 233 ATSVQGMAQRCGFELVDVQRLP 254 (416)
T ss_dssp HHHHHHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHHHHHcCCEEEEEEEcc
Confidence 9999999999999999998765
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.45 E-value=4.1e-13 Score=117.84 Aligned_cols=145 Identities=12% Similarity=0.092 Sum_probs=103.6
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC---CC--CC-C
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN---VP--SG-Q 236 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~---~p--~~-D 236 (345)
++.++ .....+|||||||+|.++..+++.+|..+++++|. +.+++.++ +++++.+|+.++ .+ .. |
T Consensus 67 l~~~~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D 145 (230)
T 1fbn_A 67 LKVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVD 145 (230)
T ss_dssp CCCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTSCCEE
T ss_pred ccccC-CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccccCccEE
Confidence 34444 55678999999999999999999998889999999 77775433 789999998762 22 33 8
Q ss_pred EEEeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 237 AIFTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 237 ~i~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
+|+ |++++. ....+|+++++.|+| ||++++. -.....+...+. . .. ..+++
T Consensus 146 ~v~-----~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~~~----------~--~~-------~~~~l 197 (230)
T 1fbn_A 146 VIY-----EDVAQPNQAEILIKNAKWFLKK---GGYGMIA-IKARSIDVTKDP----------K--EI-------FKEQK 197 (230)
T ss_dssp EEE-----ECCCSTTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSCH----------H--HH-------HHHHH
T ss_pred EEE-----EecCChhHHHHHHHHHHHhCCC---CcEEEEE-EecCCCCCCCCH----------H--Hh-------hHHHH
Confidence 887 565544 345679999999999 9998885 111111110000 0 01 14677
Q ss_pred HHHHHHCCCCceEEEecCCc---eEEEEEEcCC
Q 044482 316 KALAMAAGFGTIKVICRSYC---YWVIEFYKPK 345 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~~---~~vi~~~k~~ 345 (345)
. +|+++||+.+++..+... +.++.++|++
T Consensus 198 ~-~l~~~Gf~~~~~~~~~~~~~~~~~v~~~k~~ 229 (230)
T 1fbn_A 198 E-ILEAGGFKIVDEVDIEPFEKDHVMFVGIWEG 229 (230)
T ss_dssp H-HHHHHTEEEEEEEECTTTSTTEEEEEEEECC
T ss_pred H-HHHHCCCEEEEEEccCCCccceEEEEEEeCC
Confidence 7 999999999998887654 7888888763
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=121.85 Aligned_cols=93 Identities=10% Similarity=0.013 Sum_probs=80.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
...+|||||||+|.++..|++++. +++++|+ +.|++.|+ +++++.+|+.+ +++++ |+|++..++|+++.+
T Consensus 39 ~~~~vLDvGcGtG~~~~~l~~~~~--~v~gvD~s~~ml~~a~~~~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h~~~~~- 115 (257)
T 4hg2_A 39 ARGDALDCGCGSGQASLGLAEFFE--RVHAVDPGEAQIRQALRHPRVTYAVAPAEDTGLPPASVDVAIAAQAMHWFDLD- 115 (257)
T ss_dssp CSSEEEEESCTTTTTHHHHHTTCS--EEEEEESCHHHHHTCCCCTTEEEEECCTTCCCCCSSCEEEEEECSCCTTCCHH-
T ss_pred CCCCEEEEcCCCCHHHHHHHHhCC--EEEEEeCcHHhhhhhhhcCCceeehhhhhhhcccCCcccEEEEeeehhHhhHH-
Confidence 346899999999999999998864 7899999 88999887 89999999988 77765 999999999887654
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+.+++++++||| ||+|++. +.-.
T Consensus 116 --~~~~e~~rvLkp---gG~l~~~-~~~~ 138 (257)
T 4hg2_A 116 --RFWAELRRVARP---GAVFAAV-TYGL 138 (257)
T ss_dssp --HHHHHHHHHEEE---EEEEEEE-EECC
T ss_pred --HHHHHHHHHcCC---CCEEEEE-ECCC
Confidence 689999999999 9999888 6543
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=119.90 Aligned_cols=138 Identities=17% Similarity=0.215 Sum_probs=98.8
Q ss_pred cccceEEecCCc--cHHHHHH-HHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC-----C---CC-C
Q 044482 179 ELKKLVDVASCL--GANMSLI-VNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV-----P---SG-Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~--G~~~~~l-~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~-----p---~~-D 236 (345)
+..+|||||||+ +.++..+ .+..|+.+++++|. |.|++.|+ +++|+.+|+.++. | .. |
T Consensus 78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence 457899999997 3344444 45689999999999 99999886 4899999998731 1 11 3
Q ss_pred -----EEEeccccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccC
Q 044482 237 -----AIFTKSVLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGR 310 (345)
Q Consensus 237 -----~i~~~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~r 310 (345)
+++++.+||+++|++ ...+|++++++|+| ||.|++. +...+..+. . .....+.....-. ....|
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~P---GG~Lvls-~~~~d~~p~--~---~~~~~~~~~~~g~-p~~~r 227 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPS---GSYLAMS-IGTAEFAPQ--E---VGRVAREYAARNM-PMRLR 227 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCT---TCEEEEE-EECCTTSHH--H---HHHHHHHHHHTTC-CCCCC
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCC---CcEEEEE-eccCCCCHH--H---HHHHHHHHHhcCC-CCccC
Confidence 789999999999976 47899999999999 9999998 765432211 1 1111221111111 24568
Q ss_pred CHHHHHHHHHHCCCCceE
Q 044482 311 TAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~ 328 (345)
|.+|+.++|. ||++++
T Consensus 228 s~~ei~~~f~--Glelve 243 (277)
T 3giw_A 228 THAEAEEFFE--GLELVE 243 (277)
T ss_dssp CHHHHHHTTT--TSEECT
T ss_pred CHHHHHHHhC--CCcccC
Confidence 9999999994 998654
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.4e-13 Score=121.18 Aligned_cols=129 Identities=9% Similarity=-0.049 Sum_probs=99.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------------CceEEeccCCc-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------------------CVEHVEGDMFV- 230 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------------------ri~~~~gd~~~- 230 (345)
...+|||+|||+|..+..|+++ +.+++++|+ +.+++.|+ +++++.+|+++
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l 145 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL 145 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred CCCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence 4579999999999999999987 458999999 77776542 57899999998
Q ss_pred CCC--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCC
Q 044482 231 NVP--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQA 307 (345)
Q Consensus 231 ~~p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 307 (345)
+.+ .. |+|+++.+||++++++..++++++++.|+| ||+++++ ....+... .....
T Consensus 146 ~~~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~Lkp---GG~l~l~-~~~~~~~~------------------~~g~~ 203 (252)
T 2gb4_A 146 PRANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRK---EFQYLVA-VLSYDPTK------------------HAGPP 203 (252)
T ss_dssp GGGCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEECCTTS------------------CCCSS
T ss_pred CcccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCC---CeEEEEE-EEecCCcc------------------CCCCC
Confidence 543 23 999999999999988888999999999999 9999766 43322110 00011
Q ss_pred ccCCHHHHHHHHHHCCCCceEEEec
Q 044482 308 KGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 308 ~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
...+.+++.+++++ +|+++.....
T Consensus 204 ~~~~~~el~~~l~~-~f~v~~~~~~ 227 (252)
T 2gb4_A 204 FYVPSAELKRLFGT-KCSMQCLEEV 227 (252)
T ss_dssp CCCCHHHHHHHHTT-TEEEEEEEEE
T ss_pred CCCCHHHHHHHhhC-CeEEEEEecc
Confidence 12578999999988 5988776543
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-13 Score=116.69 Aligned_cols=128 Identities=9% Similarity=0.006 Sum_probs=104.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCCC-CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~~-D~i~~~~vlh~ 246 (345)
....+|||||||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+..+.. |+|++...+|+
T Consensus 59 ~~~~~vLDiG~G~G~~~~~l~~-~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~fD~i~~~~~~~~ 137 (205)
T 3grz_A 59 VKPLTVADVGTGSGILAIAAHK-LGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADVDGKFDLIVANILAEI 137 (205)
T ss_dssp SSCCEEEEETCTTSHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTCCSCEEEEEEESCHHH
T ss_pred cCCCEEEEECCCCCHHHHHHHH-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccCCCCceEEEECCcHHH
Confidence 3457999999999999999776 57779999999 88887766 3899999998754444 99999988765
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
...+++++++.|+| ||++++. +.... +.+++.++++++||++
T Consensus 138 -----~~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~~~~~~~~~~~Gf~~ 179 (205)
T 3grz_A 138 -----LLDLIPQLDSHLNE---DGQVIFS-GIDYL-----------------------------QLPKIEQALAENSFQI 179 (205)
T ss_dssp -----HHHHGGGSGGGEEE---EEEEEEE-EEEGG-----------------------------GHHHHHHHHHHTTEEE
T ss_pred -----HHHHHHHHHHhcCC---CCEEEEE-ecCcc-----------------------------cHHHHHHHHHHcCCce
Confidence 36789999999999 9999887 33110 2677899999999999
Q ss_pred eEEEecCCceEEEEEEcC
Q 044482 327 IKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 327 ~~~~~~~~~~~vi~~~k~ 344 (345)
+++........++.-+|+
T Consensus 180 ~~~~~~~~w~~~~~~~~~ 197 (205)
T 3grz_A 180 DLKMRAGRWIGLAISRKH 197 (205)
T ss_dssp EEEEEETTEEEEEEEECC
T ss_pred EEeeccCCEEEEEEeccc
Confidence 998888777888877765
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.1e-13 Score=114.44 Aligned_cols=128 Identities=9% Similarity=0.013 Sum_probs=97.2
Q ss_pred ceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--CEEEeccccccCCh
Q 044482 182 KLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 249 (345)
+|||||||+|.++..+++. +.+++++|. +.+++.++ +++++.+|+.+ +++.+ |+|++. +++++.
T Consensus 32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~--~~~~~~ 107 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDIVADAWEGIVSI--FCHLPS 107 (202)
T ss_dssp EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHHTCCEEEECCBTTTBSCCTTTCSEEEEE--CCCCCH
T ss_pred CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcCCceEEEEcChhhcCCCcCCccEEEEE--hhcCCH
Confidence 9999999999999999986 468999999 77877665 68899999988 66643 999984 456677
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
++...+|+++++.|+| ||++++. +....... .. ... ... ....++.++++++++ ||+++++
T Consensus 108 ~~~~~~l~~~~~~L~p---gG~l~~~-~~~~~~~~-------~~--~~~---~~~-~~~~~~~~~l~~~l~--Gf~v~~~ 168 (202)
T 2kw5_A 108 SLRQQLYPKVYQGLKP---GGVFILE-GFAPEQLQ-------YN--TGG---PKD-LDLLPKLETLQSELP--SLNWLIA 168 (202)
T ss_dssp HHHHHHHHHHHTTCCS---SEEEEEE-EECTTTGG-------GT--SCC---SSS-GGGCCCHHHHHHHCS--SSCEEEE
T ss_pred HHHHHHHHHHHHhcCC---CcEEEEE-Eecccccc-------CC--CCC---CCc-ceeecCHHHHHHHhc--CceEEEE
Confidence 7888999999999999 9999998 65432210 00 000 000 123578999999999 9999887
Q ss_pred Eec
Q 044482 330 ICR 332 (345)
Q Consensus 330 ~~~ 332 (345)
...
T Consensus 169 ~~~ 171 (202)
T 2kw5_A 169 NNL 171 (202)
T ss_dssp EEE
T ss_pred EEE
Confidence 544
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.8e-13 Score=124.88 Aligned_cols=92 Identities=24% Similarity=0.174 Sum_probs=80.2
Q ss_pred ccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCCC------C--
Q 044482 178 KELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVPS------G-- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p~------~-- 235 (345)
....+|||||||+|.++..+++++ |..+++++|+ +.+++.++ +++++.+|+.+ +++. +
T Consensus 35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f 114 (299)
T 3g5t_A 35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI 114 (299)
T ss_dssp SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence 456899999999999999999987 8899999999 77776552 79999999987 5554 4
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++ +. .++|+++++.|+| ||.+++.
T Consensus 115 D~V~~~~~l~~~-~~--~~~l~~~~~~Lkp---gG~l~i~ 148 (299)
T 3g5t_A 115 DMITAVECAHWF-DF--EKFQRSAYANLRK---DGTIAIW 148 (299)
T ss_dssp EEEEEESCGGGS-CH--HHHHHHHHHHEEE---EEEEEEE
T ss_pred eEEeHhhHHHHh-CH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999999999999 43 5899999999999 9999995
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-13 Score=116.37 Aligned_cols=140 Identities=9% Similarity=-0.024 Sum_probs=94.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhh----CC---------CceEEeccCCc-CCCCC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKN----AP---------CVEHVEGDMFV-NVPSG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~----a~---------ri~~~~gd~~~-~~p~~-D~i~~ 240 (345)
.....+|||||||+|.++..+++++|+.+++++|+ +.+++. ++ +++++.+|+.+ +++.+ |.|++
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~d~v~~ 104 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGVGELHV 104 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCEEEEEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCCCEEEE
Confidence 45667999999999999999999999999999999 776653 11 78999999988 55543 66552
Q ss_pred cc---cc--ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 241 KS---VL--LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 241 ~~---vl--h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
.. .+ |++++. ..+|++++++|+| ||++++. -.........+ .+. ....-......+++
T Consensus 105 ~~~~~~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~---------~~~--~~~~~~~~~~~~~l 167 (218)
T 3mq2_A 105 LMPWGSLLRGVLGSS--PEMLRGMAAVCRP---GASFLVA-LNLHAWRPSVP---------EVG--EHPEPTPDSADEWL 167 (218)
T ss_dssp ESCCHHHHHHHHTSS--SHHHHHHHHTEEE---EEEEEEE-EEGGGBTTBCG---------GGT--TCCCCCHHHHHHHH
T ss_pred EccchhhhhhhhccH--HHHHHHHHHHcCC---CcEEEEE-ecccccccccc---------ccc--cCCccchHHHHHHH
Confidence 21 22 244444 5789999999999 9999886 32211110000 000 00001112234568
Q ss_pred HHHHHHCCCCceEEEecC
Q 044482 316 KALAMAAGFGTIKVICRS 333 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~ 333 (345)
.++++++||++.++....
T Consensus 168 ~~~l~~aGf~i~~~~~~~ 185 (218)
T 3mq2_A 168 APRYAEAGWKLADCRYLE 185 (218)
T ss_dssp HHHHHHTTEEEEEEEEEC
T ss_pred HHHHHHcCCCceeeeccc
Confidence 889999999998886653
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-12 Score=110.95 Aligned_cols=121 Identities=14% Similarity=0.073 Sum_probs=97.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC--CC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP--SG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p--~~- 235 (345)
.+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.++ +++++.+|+.+..+ ..
T Consensus 31 ~~l~~l~-~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (204)
T 3e05_A 31 VTLSKLR-LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDP 109 (204)
T ss_dssp HHHHHTT-CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCC
T ss_pred HHHHHcC-CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCC
Confidence 4556666 66778999999999999999999999999999999 88887665 68999999987444 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++...++ ....+|+++++.|+| ||++++. .... .+.+++
T Consensus 110 D~i~~~~~~~-----~~~~~l~~~~~~Lkp---gG~l~~~-~~~~-----------------------------~~~~~~ 151 (204)
T 3e05_A 110 DRVFIGGSGG-----MLEEIIDAVDRRLKS---EGVIVLN-AVTL-----------------------------DTLTKA 151 (204)
T ss_dssp SEEEESCCTT-----CHHHHHHHHHHHCCT---TCEEEEE-ECBH-----------------------------HHHHHH
T ss_pred CEEEECCCCc-----CHHHHHHHHHHhcCC---CeEEEEE-eccc-----------------------------ccHHHH
Confidence 9999998876 335789999999999 9999988 3210 025678
Q ss_pred HHHHHHCCCCceEE
Q 044482 316 KALAMAAGFGTIKV 329 (345)
Q Consensus 316 ~~ll~~aGf~~~~~ 329 (345)
.++++++|| .+++
T Consensus 152 ~~~l~~~g~-~~~~ 164 (204)
T 3e05_A 152 VEFLEDHGY-MVEV 164 (204)
T ss_dssp HHHHHHTTC-EEEE
T ss_pred HHHHHHCCC-ceeE
Confidence 899999998 4443
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.3e-13 Score=117.27 Aligned_cols=144 Identities=14% Similarity=0.057 Sum_probs=94.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC----
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS---- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~---- 234 (345)
..+++.++......+|||+|||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.++++.
T Consensus 19 ~~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 98 (215)
T 4dzr_A 19 EEAIRFLKRMPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEWLIERAER 98 (215)
T ss_dssp HHHHHHHTTCCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHHHHHHHHT
T ss_pred HHHHHHhhhcCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhhhhhhhhc
Confidence 34455544225668999999999999999999999999999999 88888776 478899999874442
Q ss_pred -C--CEEEecccc------ccCChhHH------------------HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc
Q 044482 235 -G--QAIFTKSVL------LNWSDEQC------------------LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS 287 (345)
Q Consensus 235 -~--D~i~~~~vl------h~~~d~~~------------------~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~ 287 (345)
+ |+|+++..+ ++++++.. ..+++++++.|+| ||+++++ +.-.
T Consensus 99 ~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~------- 167 (215)
T 4dzr_A 99 GRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLAR---GRAGVFL-EVGH------- 167 (215)
T ss_dssp TCCBSEEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCS---SSEEEEE-ECTT-------
T ss_pred cCcccEEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcC---CCeEEEE-EECC-------
Confidence 3 999996433 34443332 6889999999999 9995555 3210
Q ss_pred hhhhhhhccchhhhhhcCCCccCCHHHHHHHHH--HCCCCceEEEecC-CceEEEEEEcC
Q 044482 288 SINRNILTLDIVMYDLFPQAKGRTAGEFKALAM--AAGFGTIKVICRS-YCYWVIEFYKP 344 (345)
Q Consensus 288 ~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~--~aGf~~~~~~~~~-~~~~vi~~~k~ 344 (345)
...+++.++++ ++||..+++.... +...++.++|.
T Consensus 168 ----------------------~~~~~~~~~l~~~~~gf~~~~~~~~~~~~~r~~~~~~~ 205 (215)
T 4dzr_A 168 ----------------------NQADEVARLFAPWRERGFRVRKVKDLRGIDRVIAVTRE 205 (215)
T ss_dssp ----------------------SCHHHHHHHTGGGGGGTEECCEEECTTSCEEEEEEEEC
T ss_pred ----------------------ccHHHHHHHHHHhhcCCceEEEEEecCCCEEEEEEEEc
Confidence 12566788899 9999888776654 44566666653
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=4.7e-12 Score=114.19 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=106.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D 236 (345)
.+++.++ ....+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|++++++. . |
T Consensus 101 ~~l~~~~--~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD 178 (276)
T 2b3t_A 101 QALARLP--EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFA 178 (276)
T ss_dssp HHHHHSC--SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEE
T ss_pred HHHHhcc--cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCcc
Confidence 4444443 3456899999999999999999999999999999 77777665 589999999986653 3 9
Q ss_pred EEEec-------------cccccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh
Q 044482 237 AIFTK-------------SVLLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNI 293 (345)
Q Consensus 237 ~i~~~-------------~vlh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~ 293 (345)
+|+++ .++++.+. +...++++++++.|+| ||++++. ..
T Consensus 179 ~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~Lkp---gG~l~~~-~~--------------- 239 (276)
T 2b3t_A 179 MIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE-HG--------------- 239 (276)
T ss_dssp EEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE-CC---------------
T ss_pred EEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCC---CCEEEEE-EC---------------
Confidence 99997 34444432 3457899999999999 9988876 21
Q ss_pred hccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEEc
Q 044482 294 LTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFYK 343 (345)
Q Consensus 294 ~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~k 343 (345)
..+.+++.++++++||+.+++... .+...++.+++
T Consensus 240 ---------------~~~~~~~~~~l~~~Gf~~v~~~~d~~g~~r~~~~~~ 275 (276)
T 2b3t_A 240 ---------------WQQGEAVRQAFILAGYHDVETCRDYGDNERVTLGRY 275 (276)
T ss_dssp ---------------SSCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEEC
T ss_pred ---------------chHHHHHHHHHHHCCCcEEEEEecCCCCCcEEEEEE
Confidence 013677899999999998887654 45566776654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.40 E-value=1.1e-13 Score=125.58 Aligned_cols=136 Identities=12% Similarity=-0.009 Sum_probs=94.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-C------------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-C------------------------------------ 220 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-r------------------------------------ 220 (345)
...+|||||||+|.++ .++...+..+++++|+ +.+++.++ +
T Consensus 71 ~~~~vLDiGcG~G~~~-~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 71 SGRTLIDIGSGPTVYQ-LLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp CCSEEEEETCTTCCGG-GTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCeEEEECCCcChHH-HHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 4578999999999954 3444444569999999 78876543 1
Q ss_pred --ceEEeccCCcC-------CCCC--CEEEeccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc
Q 044482 221 --VEHVEGDMFVN-------VPSG--QAIFTKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS 287 (345)
Q Consensus 221 --i~~~~gd~~~~-------~p~~--D~i~~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~ 287 (345)
++++.+|+.+. ++++ |+|++..+||+.+++ +..++|++++++||| ||++++. +......
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~~~-~~~~~~~---- 221 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLI-GALEESW---- 221 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EEESCCE----
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHHHHhcCC---CCEEEEE-EecCcce----
Confidence 33555688762 2233 999999999996543 567899999999999 9999998 6432110
Q ss_pred hhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 288 SINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 288 ~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
. ...+. .. ....++.++|.++|+++||+++++...+
T Consensus 222 ----~-~~~~~----~~-~~~~~~~~~l~~~l~~aGf~~~~~~~~~ 257 (289)
T 2g72_A 222 ----Y-LAGEA----RL-TVVPVSEEEVREALVRSGYKVRDLRTYI 257 (289)
T ss_dssp ----E-EETTE----EE-ECCCCCHHHHHHHHHHTTEEEEEEEEEE
T ss_pred ----E-EcCCe----ee-eeccCCHHHHHHHHHHcCCeEEEeeEee
Confidence 0 00000 00 1224689999999999999998876543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1e-12 Score=113.37 Aligned_cols=139 Identities=12% Similarity=-0.032 Sum_probs=97.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCC-eEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQI-TGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIF 239 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~-~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~ 239 (345)
.+++.+. ....+|||||||+|.++..+ +. +++++|. +.+++.++ +++++.+|+.+ +++++ |+|+
T Consensus 28 ~~l~~~~--~~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~ 100 (211)
T 2gs9_A 28 RALKGLL--PPGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRAPEATWVRAWGEALPFPGESFDVVL 100 (211)
T ss_dssp HHHHTTC--CCCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHCTTSEEECCCTTSCCSCSSCEEEEE
T ss_pred HHHHHhc--CCCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhCCCcEEEEcccccCCCCCCcEEEEE
Confidence 3445443 25679999999999999887 44 8999999 78887766 78999999987 66653 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+.+++||+++. .++|+++++.|+| ||++++. +.... ................... ....+|.++++++|
T Consensus 101 ~~~~l~~~~~~--~~~l~~~~~~L~p---gG~l~i~-~~~~~----~~~~~~~~~~~~~~~~~~~-~~~~~s~~~l~~~l 169 (211)
T 2gs9_A 101 LFTTLEFVEDV--ERVLLEARRVLRP---GGALVVG-VLEAL----SPWAALYRRLGEKGVLPWA-QARFLAREDLKALL 169 (211)
T ss_dssp EESCTTTCSCH--HHHHHHHHHHEEE---EEEEEEE-EECTT----SHHHHHHHHHHHTTCTTGG-GCCCCCHHHHHHHH
T ss_pred EcChhhhcCCH--HHHHHHHHHHcCC---CCEEEEE-ecCCc----CcHHHHHHHHhhccCcccc-ccccCCHHHHHHHh
Confidence 99999999876 4899999999999 9999998 54221 1110000000000000011 23457999999999
Q ss_pred HHCCCCceEE
Q 044482 320 MAAGFGTIKV 329 (345)
Q Consensus 320 ~~aGf~~~~~ 329 (345)
+ | ++++
T Consensus 170 ~--G--~~~~ 175 (211)
T 2gs9_A 170 G--P--PEAE 175 (211)
T ss_dssp C--S--CSEE
T ss_pred c--C--ccee
Confidence 9 8 4444
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-12 Score=112.80 Aligned_cols=141 Identities=17% Similarity=0.060 Sum_probs=90.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhC---C---------CceEEeccCCcCCCC--CCEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNA---P---------CVEHVEGDMFVNVPS--GQAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a---~---------ri~~~~gd~~~~~p~--~D~i~~~~ 242 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.|++.| + +++++.+|+.+. |. .|.|.+..
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l-~~~~~d~v~~i~ 102 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL-PFELKNIADSIS 102 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC-CGGGTTCEEEEE
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh-hhhccCeEEEEE
Confidence 457899999999999999999999999999999 4555544 3 689999998762 42 25555555
Q ss_pred ccccCChhH------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 243 VLLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 243 vlh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+.+.|+... ...+|++++++||| ||++++. ..+... ...... ...+ .... .......+++.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~l~~~~r~Lkp---GG~l~i~-~~~~~~-~~~~~~----~~~~---~~~~-~~~~~~~~el~ 169 (225)
T 3p2e_A 103 ILFPWGTLLEYVIKPNRDILSNVADLAKK---EAHFEFV-TTYSDS-YEEAEI----KKRG---LPLL-SKAYFLSEQYK 169 (225)
T ss_dssp EESCCHHHHHHHHTTCHHHHHHHHTTEEE---EEEEEEE-ECCCC----------------------C-CHHHHHSHHHH
T ss_pred EeCCCcHHhhhhhcchHHHHHHHHHhcCC---CcEEEEE-Eecccc-chhchh----hhcC---CCCC-ChhhcchHHHH
Confidence 544444321 13589999999999 9999995 433222 110000 0000 0000 00011123599
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
++++++||++.++...+
T Consensus 170 ~~l~~aGf~v~~~~~~~ 186 (225)
T 3p2e_A 170 AELSNSGFRIDDVKELD 186 (225)
T ss_dssp HHHHHHTCEEEEEEEEC
T ss_pred HHHHHcCCCeeeeeecC
Confidence 99999999988876554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.37 E-value=3.4e-12 Score=107.96 Aligned_cols=137 Identities=17% Similarity=0.195 Sum_probs=105.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------C--ceEEeccCCcCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------C--VEHVEGDMFVNVPS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------r--i~~~~gd~~~~~p~-~ 235 (345)
.+++.+. .....+|||||||+|.++..+++. ..+++++|+ +.+++.++ + ++++.+|+.+..+. .
T Consensus 43 ~l~~~~~-~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 119 (194)
T 1dus_A 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHHcc-cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccccCC
Confidence 4555555 566789999999999999999988 678999998 77777655 2 89999999886554 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++...+|+ ..+....+++++++.|+| ||++++. ..... ...+
T Consensus 120 ~D~v~~~~~~~~-~~~~~~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~~~ 165 (194)
T 1dus_A 120 YNKIITNPPIRA-GKEVLHRIIEEGKELLKD---NGEIWVV-IQTKQ-----------------------------GAKS 165 (194)
T ss_dssp EEEEEECCCSTT-CHHHHHHHHHHHHHHEEE---EEEEEEE-EESTH-----------------------------HHHH
T ss_pred ceEEEECCCccc-chhHHHHHHHHHHHHcCC---CCEEEEE-ECCCC-----------------------------ChHH
Confidence 99999888874 455667899999999999 9999988 32100 0235
Q ss_pred HHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 315 FKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+.+.+++. |..+++........++.++|
T Consensus 166 ~~~~l~~~-~~~~~~~~~~~~~~~~~~~k 193 (194)
T 1dus_A 166 LAKYMKDV-FGNVETVTIKGGYRVLKSKK 193 (194)
T ss_dssp HHHHHHHH-HSCCEEEEEETTEEEEEEEC
T ss_pred HHHHHHHH-hcceEEEecCCcEEEEEEee
Confidence 67778777 77777776666677777765
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=121.01 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC------------------CCceEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA------------------PCVEHVEGD 227 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a------------------~ri~~~~gd 227 (345)
...+++.+. .....+|||||||+|..+..++..++..+++++|+ +.+++.| .+|+|+.||
T Consensus 162 i~~il~~l~-l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD 240 (438)
T 3uwp_A 162 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 240 (438)
T ss_dssp HHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECc
Confidence 455667666 77788999999999999999999887767999999 5554332 168999999
Q ss_pred CCc-CCC----CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCC
Q 044482 228 MFV-NVP----SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESP 284 (345)
Q Consensus 228 ~~~-~~p----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~ 284 (345)
+++ +++ ..|+|+++++++ + ++....|+++++.||| ||+|++. |.+.+++.
T Consensus 241 ~~~lp~~d~~~~aDVVf~Nn~~F-~--pdl~~aL~Ei~RvLKP---GGrIVss-E~f~p~d~ 295 (438)
T 3uwp_A 241 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSS-KPFAPLNF 295 (438)
T ss_dssp TTSHHHHHHHHTCSEEEECCTTC-C--HHHHHHHHHHHTTSCT---TCEEEES-SCSSCTTC
T ss_pred ccCCccccccCCccEEEEccccc-C--chHHHHHHHHHHcCCC---CcEEEEe-ecccCCCC
Confidence 998 553 349999988774 3 3446778999999999 9999999 99988754
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=3.4e-13 Score=118.99 Aligned_cols=130 Identities=11% Similarity=-0.006 Sum_probs=90.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEe---
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFT--- 240 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~--- 240 (345)
....+|||||||+|..+..+++..|. +++++|+ |.+++.|+ +++++.+|+.. +++++ |.|++
T Consensus 59 ~~G~rVLdiG~G~G~~~~~~~~~~~~-~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 59 SKGGRVLEVGFGMAIAASKVQEAPID-EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTCEEEEEECCTTSHHHHHHTTSCEE-EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred cCCCeEEEECCCccHHHHHHHHhCCc-EEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 35579999999999999999988775 7899999 88988776 57888888754 45543 77764
Q ss_pred --ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHH
Q 044482 241 --KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 241 --~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
...++|+.+. ..+++++++.||| ||+++++ +...... ......+ .-.....+.+...
T Consensus 138 ~~~~~~~~~~~~--~~~~~e~~rvLkP---GG~l~f~-~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~ 196 (236)
T 3orh_A 138 PLSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYC-NLTSWGE-------LMKSKYS--------DITIMFEETQVPA 196 (236)
T ss_dssp CCBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEEC-CHHHHHH-------HTTTTCS--------CHHHHHHHHTHHH
T ss_pred ecccchhhhcch--hhhhhhhhheeCC---CCEEEEE-ecCCchh-------hhhhhhh--------hhhhhhHHHHHHH
Confidence 4555666554 5889999999999 9998877 4321100 0000011 0011124567788
Q ss_pred HHHCCCCceEE
Q 044482 319 AMAAGFGTIKV 329 (345)
Q Consensus 319 l~~aGf~~~~~ 329 (345)
|.++||+++.+
T Consensus 197 L~eaGF~~~~i 207 (236)
T 3orh_A 197 LLEAGFRRENI 207 (236)
T ss_dssp HHHHTCCGGGE
T ss_pred HHHcCCeEEEE
Confidence 89999997655
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-12 Score=113.32 Aligned_cols=94 Identities=16% Similarity=0.139 Sum_probs=80.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCCC-C-CEEEecccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVPS-G-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~ 246 (345)
.....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+..+. . |+|++.+++||
T Consensus 49 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~ 126 (216)
T 3ofk_A 49 SGAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQFSTAELFDLIVVAEVLYY 126 (216)
T ss_dssp TSSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTTTCSSEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred cCCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcccCCCeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence 4566899999999999999999885 47999999 78877665 689999999883353 3 99999999999
Q ss_pred CCh-hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSD-EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d-~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++ +...++|+++++.|+| ||.+++.
T Consensus 127 ~~~~~~~~~~l~~~~~~L~p---gG~l~~~ 153 (216)
T 3ofk_A 127 LEDMTQMRTAIDNMVKMLAP---GGHLVFG 153 (216)
T ss_dssp SSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 997 5566899999999999 9999987
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.6e-12 Score=114.78 Aligned_cols=95 Identities=9% Similarity=0.061 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------C---------ceEEeccCCc---------CCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------C---------VEHVEGDMFV---------NVP 233 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------r---------i~~~~gd~~~---------~~p 233 (345)
...+|||||||+|..+..+++.. ..+++++|+ +.+++.|+ . ++|...|+.. +++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~ 126 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY 126 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred CCCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence 35789999999998777666543 468999999 88998887 1 4577777721 234
Q ss_pred CC--CEEEecccccc-CChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 234 SG--QAIFTKSVLLN-WSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 234 ~~--D~i~~~~vlh~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.+ |+|++..++|+ |++++...+|++++++|+| ||.+++. ..
T Consensus 127 ~~~FD~V~~~~~lhy~~~~~~~~~~l~~~~r~Lkp---GG~~i~~-~~ 170 (302)
T 2vdw_A 127 FGKFNIIDWQFAIHYSFHPRHYATVMNNLSELTAS---GGKVLIT-TM 170 (302)
T ss_dssp SSCEEEEEEESCGGGTCSTTTHHHHHHHHHHHEEE---EEEEEEE-EE
T ss_pred CCCeeEEEECchHHHhCCHHHHHHHHHHHHHHcCC---CCEEEEE-eC
Confidence 33 99999999997 4555567999999999999 9999887 44
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.6e-12 Score=111.53 Aligned_cols=142 Identities=12% Similarity=0.065 Sum_probs=99.3
Q ss_pred hccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC--CC--CC--CE
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN--VP--SG--QA 237 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~--~p--~~--D~ 237 (345)
.++ .+...+|||+|||+|.++..+++. .|+-+++++|. |.+++.++ ++..+.+|...+ .+ .. |+
T Consensus 72 ~l~-ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~~d~~~p~~~~~~~~~vDv 150 (233)
T 4df3_A 72 ELP-VKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPILGDARFPEKYRHLVEGVDG 150 (233)
T ss_dssp CCC-CCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEESCTTCGGGGTTTCCCEEE
T ss_pred hcC-CCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEEEeccCccccccccceEEE
Confidence 344 678899999999999999999997 58899999999 88876543 788888888662 22 22 87
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
|++. +++.. +...+++++++.||| ||+++|. ......+... ... ...++-.+
T Consensus 151 Vf~d--~~~~~--~~~~~l~~~~r~LKp---GG~lvI~-ik~r~~d~~~-------------------p~~-~~~~~ev~ 202 (233)
T 4df3_A 151 LYAD--VAQPE--QAAIVVRNARFFLRD---GGYMLMA-IKARSIDVTT-------------------EPS-EVYKREIK 202 (233)
T ss_dssp EEEC--CCCTT--HHHHHHHHHHHHEEE---EEEEEEE-EECCHHHHHT-------------------CCC-HHHHHHHH
T ss_pred EEEe--ccCCh--hHHHHHHHHHHhccC---CCEEEEE-EecccCCCCC-------------------ChH-HHHHHHHH
Confidence 7753 32222 345789999999999 9999987 4221111000 000 11234457
Q ss_pred HHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 318 LAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 318 ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
.|+++||+.++...+.+ .|.++.++.
T Consensus 203 ~L~~~GF~l~e~i~L~pf~~~H~lv~~~~ 231 (233)
T 4df3_A 203 TLMDGGLEIKDVVHLDPFDRDHAMIYAVM 231 (233)
T ss_dssp HHHHTTCCEEEEEECTTTSTTEEEEEECC
T ss_pred HHHHCCCEEEEEEccCCCCCceEEEEEEE
Confidence 78999999999888754 477777664
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.32 E-value=3.9e-12 Score=106.42 Aligned_cols=96 Identities=17% Similarity=0.172 Sum_probs=79.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC--C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS--G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~--~ 235 (345)
.+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.++ ++ ++.+|..+.++. +
T Consensus 16 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~ 93 (178)
T 3hm2_A 16 LAISALA-PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPD 93 (178)
T ss_dssp HHHHHHC-CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCS
T ss_pred HHHHHhc-ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCC
Confidence 4455555 56678999999999999999999999999999999 77777655 46 888888775542 3
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+|+ ..+++++++.|+| ||++++.
T Consensus 94 ~~D~i~~~~~~~~------~~~l~~~~~~L~~---gG~l~~~ 126 (178)
T 3hm2_A 94 NPDVIFIGGGLTA------PGVFAAAWKRLPV---GGRLVAN 126 (178)
T ss_dssp CCSEEEECC-TTC------TTHHHHHHHTCCT---TCEEEEE
T ss_pred CCCEEEECCcccH------HHHHHHHHHhcCC---CCEEEEE
Confidence 99999999987 4689999999999 9999988
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-12 Score=113.35 Aligned_cols=95 Identities=14% Similarity=0.079 Sum_probs=75.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc---CCCCC--CEEEe-ccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIFT-KSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~~-~~v 243 (345)
...+|||||||+|.++..+++..+ .+++++|+ +.+++.|+ +++++.+|+.+ +++++ |+|++ .+.
T Consensus 60 ~~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~~ 138 (236)
T 1zx0_A 60 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 138 (236)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcccCCCceEEEEECCcc
Confidence 457999999999999999976544 38999999 88887665 58899999876 35544 99998 554
Q ss_pred --cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 244 --LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 244 --lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.+++.......+|+++++.||| ||++++. +.
T Consensus 139 ~~~~~~~~~~~~~~l~~~~r~Lkp---gG~l~~~-~~ 171 (236)
T 1zx0_A 139 LSEETWHTHQFNFIKNHAFRLLKP---GGVLTYC-NL 171 (236)
T ss_dssp CBGGGTTTHHHHHHHHTHHHHEEE---EEEEEEC-CH
T ss_pred cchhhhhhhhHHHHHHHHHHhcCC---CeEEEEE-ec
Confidence 4555555566889999999999 9999988 54
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=108.46 Aligned_cols=135 Identities=13% Similarity=0.162 Sum_probs=98.6
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCC--cCCCCC--CEEEecc
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMF--VNVPSG--QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~--~~~p~~--D~i~~~~ 242 (345)
.....+|||+||| +|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+. .+++++ |+|++.-
T Consensus 53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~~np 131 (230)
T 3evz_A 53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIFSAP 131 (230)
T ss_dssp CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEEECC
T ss_pred cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEEECC
Confidence 3466899999999 999999999987 678999999 88887766 5899999963 355543 9999987
Q ss_pred ccccCChhH-----------------HHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC
Q 044482 243 VLLNWSDEQ-----------------CLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP 305 (345)
Q Consensus 243 vlh~~~d~~-----------------~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 305 (345)
.++..++.+ ...+|+++.+.|+| ||++++. -.. .
T Consensus 132 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~---~---------------------- 182 (230)
T 3evz_A 132 PYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNP---GGKVALY-LPD---K---------------------- 182 (230)
T ss_dssp CCC---------------CCSSSCHHHHHHHHHHGGGEEE---EEEEEEE-EES---C----------------------
T ss_pred CCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCC---CeEEEEE-ecc---c----------------------
Confidence 776554422 26799999999999 9999887 110 0
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecCC--ceEEEEEEcC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRSY--CYWVIEFYKP 344 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~~--~~~vi~~~k~ 344 (345)
....+++.++++++||++..+....+ ...++...|+
T Consensus 183 ---~~~~~~~~~~l~~~g~~~~~~~~~~g~~~~~~l~f~~~ 220 (230)
T 3evz_A 183 ---EKLLNVIKERGIKLGYSVKDIKFKVGTRWRHSLIFFKG 220 (230)
T ss_dssp ---HHHHHHHHHHHHHTTCEEEEEEECCCC-CEEEEEEECC
T ss_pred ---HhHHHHHHHHHHHcCCceEEEEecCCCeEEEEEEEecc
Confidence 01256788999999998777655544 2456665554
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-11 Score=124.34 Aligned_cols=101 Identities=13% Similarity=0.117 Sum_probs=84.2
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------------CceEEeccCCc-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------------CVEHVEGDMFV-N 231 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~-~ 231 (345)
+++.+. .....+|||||||+|.++..+++.. |..+++++|+ +.+++.|+ +++++.+|+.+ +
T Consensus 713 LLelL~-~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp 791 (950)
T 3htx_A 713 ALKHIR-ESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD 791 (950)
T ss_dssp HHHHHH-HSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred HHHHhc-ccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence 344443 3456799999999999999999998 5579999999 77776552 58999999988 5
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+.+ |+|++..++||++++....+++++++.|+| | .++|.
T Consensus 792 ~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKP---G-~LIIS 833 (950)
T 3htx_A 792 SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHP---K-LLIVS 833 (950)
T ss_dssp TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCC---S-EEEEE
T ss_pred cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCC---C-EEEEE
Confidence 5533 999999999999999888999999999999 8 66665
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.29 E-value=4e-12 Score=111.60 Aligned_cols=140 Identities=13% Similarity=-0.000 Sum_probs=97.4
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhH----hhhCC---CceEEeccCCcC--CC--C-C-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYV----IKNAP---CVEHVEGDMFVN--VP--S-G-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~----i~~a~---ri~~~~gd~~~~--~p--~-~-D~i~~~ 241 (345)
.....+|||+|||+|.++..+++++ |..+++++|+ |.+ ++.++ +++++.+|+.++ ++ . . |+|++.
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 5567899999999999999999986 7789999999 554 33343 799999999872 33 2 3 999985
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..+....+++++++.|+| ||++++. -.-....... .. ..+-..+ .++|++
T Consensus 155 ~~----~~~~~~~~~~~~~~~Lkp---gG~l~i~-~~~~~~~~~~----------~~---------~~~~~~~-~~~l~~ 206 (233)
T 2ipx_A 155 VA----QPDQTRIVALNAHTFLRN---GGHFVIS-IKANCIDSTA----------SA---------EAVFASE-VKKMQQ 206 (233)
T ss_dssp CC----CTTHHHHHHHHHHHHEEE---EEEEEEE-EEHHHHCSSS----------CH---------HHHHHHH-HHTTGG
T ss_pred CC----CccHHHHHHHHHHHHcCC---CeEEEEE-EcccccccCC----------CH---------HHHHHHH-HHHHHH
Confidence 43 334446779999999999 9988886 2110000000 00 0000123 589999
Q ss_pred CCCCceEEEecCC---ceEEEEEEcC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~ 344 (345)
+||+++++..... .+.++.+++.
T Consensus 207 ~Gf~~~~~~~~~~~~~~~~~v~~~~~ 232 (233)
T 2ipx_A 207 ENMKPQEQLTLEPYERDHAVVVGVYR 232 (233)
T ss_dssp GTEEEEEEEECTTTSSSEEEEEEEEC
T ss_pred CCCceEEEEecCCccCCcEEEEEEeC
Confidence 9999998777653 3777777765
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-12 Score=111.79 Aligned_cols=101 Identities=6% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CC------CCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NV------PSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~------p~~- 235 (345)
..+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.|++.++ .-.++.+|+.+ +. +..
T Consensus 35 ~~il~~l~-l~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~~~v~~~~~~~~~~~~~~~~~~f 111 (261)
T 3iv6_A 35 ENDIFLEN-IVPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALADRCVTIDLLDITAEIPKELAGHF 111 (261)
T ss_dssp HHHHHTTT-CCTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSSSCCEEEECCTTSCCCGGGTTCC
T ss_pred HHHHHhcC-CCCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhccceeeeeecccccccccCCCc
Confidence 34566666 667789999999999999999987 458999999 88988776 11134455443 22 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++||++.++...+|+++++.| | ||++++.
T Consensus 112 D~Vv~~~~l~~~~~~~~~~~l~~l~~lL-P---GG~l~lS 147 (261)
T 3iv6_A 112 DFVLNDRLINRFTTEEARRACLGMLSLV-G---SGTVRAS 147 (261)
T ss_dssp SEEEEESCGGGSCHHHHHHHHHHHHHHH-T---TSEEEEE
T ss_pred cEEEEhhhhHhCCHHHHHHHHHHHHHhC-c---CcEEEEE
Confidence 9999999999999999899999999999 9 9999887
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=8.4e-12 Score=114.52 Aligned_cols=95 Identities=15% Similarity=0.027 Sum_probs=78.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------------CceEEeccCCc-C----CC--C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------------CVEHVEGDMFV-N----VP--S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------------ri~~~~gd~~~-~----~p--~ 234 (345)
...+|||||||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+ + ++ .
T Consensus 34 ~~~~VLDlGcG~G~~~~~l~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 112 (313)
T 3bgv_A 34 RDITVLDLGCGKGGDLLKWKK-GRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ 112 (313)
T ss_dssp -CCEEEEETCTTTTTHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred CCCEEEEECCCCcHHHHHHHh-cCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence 567999999999999999987 46779999999 77777654 37899999987 4 43 2
Q ss_pred -C-CEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 235 -G-QAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 235 -~-D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
. |+|++..++|+. +.++...+|++++++|+| ||.+++. ..
T Consensus 113 ~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~ 156 (313)
T 3bgv_A 113 MCFDICSCQFVCHYSFESYEQADMMLRNACERLSP---GGYFIGT-TP 156 (313)
T ss_dssp CCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTEEE---EEEEEEE-EE
T ss_pred CCEEEEEEecchhhccCCHHHHHHHHHHHHHHhCC---CcEEEEe-cC
Confidence 3 999999999987 445677999999999999 9999887 54
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=114.81 Aligned_cols=93 Identities=16% Similarity=0.186 Sum_probs=78.3
Q ss_pred ccceEEecCCccH----HHHHHHHHCC----CCeEEEeeh-hhHhhhCC-------------------------------
Q 044482 180 LKKLVDVASCLGA----NMSLIVNTYP----QITGINFDL-PYVIKNAP------------------------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~----~~~~l~~~~p----~~~~~~~Dl-p~~i~~a~------------------------------- 219 (345)
..+|+|+|||+|. +++.+++..| +.++++.|+ +.+++.|+
T Consensus 106 ~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~ 185 (274)
T 1af7_A 106 EYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGL 185 (274)
T ss_dssp CEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSE
T ss_pred CcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCc
Confidence 4689999999998 6666777755 468999999 78877553
Q ss_pred ---------CceEEeccCCc-CCC-C-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ---------CVEHVEGDMFV-NVP-S-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ---------ri~~~~gd~~~-~~p-~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|..+|+.+ ++| . . |+|+|+++|++++++...+++++++++|+| ||.+++-
T Consensus 186 ~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf~~~~~~~vl~~~~~~L~p---gG~L~lg 251 (274)
T 1af7_A 186 VRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG 251 (274)
T ss_dssp EEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred eeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhCCHHHHHHHHHHHHHHhCC---CcEEEEE
Confidence 36788999998 565 3 3 999999999999999889999999999999 9988875
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.3e-11 Score=106.89 Aligned_cols=94 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~--D~i~~~~v 243 (345)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.++ +++++.+|+.+ + ++.+ |+|++...
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~ 120 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS 120 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence 346899999999999999999999999999999 78877664 68999999987 4 5543 99998865
Q ss_pred cccCChh------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDE------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+..... ....+|+++++.|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 155 (214)
T 1yzh_A 121 DPWPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 155 (214)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred CCccccchhhhccCCHHHHHHHHHHcCC---CcEEEEE
Confidence 4322211 124689999999999 9998887
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=104.39 Aligned_cols=128 Identities=9% Similarity=-0.012 Sum_probs=92.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC--CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~--D~i~~~~vlh~ 246 (345)
....+|||||||+|-++..++...|+.+++++|+ +.+++.++ ..++...|..+..|.+ |+|+...+||+
T Consensus 48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~~~~~~~DvVLa~k~LHl 127 (200)
T 3fzg_A 48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESDVYKGTYDVVFLLKMLPV 127 (200)
T ss_dssp CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHHHTTSEEEEEEEETCHHH
T ss_pred CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEecccccCCCCCcChhhHhhHHHh
Confidence 3467999999999999999999999999999999 88888776 2234447777644433 99999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEec--cCCCCCCCCchhhhhhhccchhhhhhcCCCc-cCCHHHHHHHHHHCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSK--RGLPESPEFSSINRNILTLDIVMYDLFPQAK-GRTAGEFKALAMAAG 323 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d--~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~rt~~e~~~ll~~aG 323 (345)
+ ++. ...+.+++++|+| ||.++.. + .+.... -|. +.-.+.|++.+ ...
T Consensus 128 L-~~~-~~al~~v~~~L~p---ggvfISf-ptksl~Gr~----------------------~gm~~~Y~~~~~~~~-~~~ 178 (200)
T 3fzg_A 128 L-KQQ-DVNILDFLQLFHT---QNFVISF-PIKSLSGKE----------------------KGMEENYQLWFESFT-KGW 178 (200)
T ss_dssp H-HHT-TCCHHHHHHTCEE---EEEEEEE-ECCCCC--C----------------------TTCCCCHHHHHHHHT-TTT
T ss_pred h-hhh-HHHHHHHHHHhCC---CCEEEEe-ChHHhcCCC----------------------cchhhhHHHHHHHhc-cCc
Confidence 9 433 4556699999999 8877766 4 111111 111 22356677777 666
Q ss_pred CCceEEEecCC
Q 044482 324 FGTIKVICRSY 334 (345)
Q Consensus 324 f~~~~~~~~~~ 334 (345)
+.+++....+.
T Consensus 179 ~~~~~~~~~~n 189 (200)
T 3fzg_A 179 IKILDSKVIGN 189 (200)
T ss_dssp SCEEEEEEETT
T ss_pred ceeeeeeeeCc
Confidence 77777777754
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.27 E-value=9.5e-12 Score=109.79 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=98.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC----CC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP----SG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p----~~-D~i~~ 240 (345)
+....+|||||||+|..+..++...|+.+++++|. +.+++.++ +++++.+|+.+ +.+ .. |+|++
T Consensus 68 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (240)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred cCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEE
Confidence 45668999999999999999999999999999999 77777665 68999999877 432 23 99998
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
..+ .+ ...+++.+++.|+| ||++++. +.... . ...+++.+.++
T Consensus 148 ~~~----~~--~~~~l~~~~~~Lkp---gG~l~~~-~g~~~------~---------------------~~~~~~~~~l~ 190 (240)
T 1xdz_A 148 RAV----AR--LSVLSELCLPLVKK---NGLFVAL-KAASA------E---------------------EELNAGKKAIT 190 (240)
T ss_dssp ECC----SC--HHHHHHHHGGGEEE---EEEEEEE-ECC-C------H---------------------HHHHHHHHHHH
T ss_pred ecc----CC--HHHHHHHHHHhcCC---CCEEEEE-eCCCc------h---------------------HHHHHHHHHHH
Confidence 763 22 35899999999999 9999887 32100 0 01346778999
Q ss_pred HCCCCceEEEec--C---CceEEEEEEcC
Q 044482 321 AAGFGTIKVICR--S---YCYWVIEFYKP 344 (345)
Q Consensus 321 ~aGf~~~~~~~~--~---~~~~vi~~~k~ 344 (345)
++||+..++... + +...++.++|.
T Consensus 191 ~~g~~~~~~~~~~~~~~~~~~~l~~~~k~ 219 (240)
T 1xdz_A 191 TLGGELENIHSFKLPIEESDRNIMVIRKI 219 (240)
T ss_dssp HTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred HcCCeEeEEEEEecCCCCCceEEEEEEec
Confidence 999998877543 3 34566666654
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.27 E-value=5.1e-12 Score=113.90 Aligned_cols=122 Identities=11% Similarity=0.058 Sum_probs=91.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.+++.++ .....+|||+|||+|.++..+++. +|..+++++|+ +.+++.++ +++++.+|+.++++++
T Consensus 101 ~~~~~~~-~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~ 179 (275)
T 1yb2_A 101 YIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQM 179 (275)
T ss_dssp -----CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCC
T ss_pred HHHHHcC-CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCC
Confidence 4556666 677789999999999999999998 78899999999 77766443 5889999998866643
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++ ++++. ..+|+++++.|+| ||++++. .... . ..++
T Consensus 180 fD~Vi~-----~~~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~----------------------~-------~~~~ 219 (275)
T 1yb2_A 180 YDAVIA-----DIPDP--WNHVQKIASMMKP---GSVATFY-LPNF----------------------D-------QSEK 219 (275)
T ss_dssp EEEEEE-----CCSCG--GGSHHHHHHTEEE---EEEEEEE-ESSH----------------------H-------HHHH
T ss_pred ccEEEE-----cCcCH--HHHHHHHHHHcCC---CCEEEEE-eCCH----------------------H-------HHHH
Confidence 99987 45554 4789999999999 9999998 4210 0 1345
Q ss_pred HHHHHHHCCCCceEEEe
Q 044482 315 FKALAMAAGFGTIKVIC 331 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~ 331 (345)
+.++++++||+.+++..
T Consensus 220 ~~~~l~~~Gf~~~~~~~ 236 (275)
T 1yb2_A 220 TVLSLSASGMHHLETVE 236 (275)
T ss_dssp HHHHSGGGTEEEEEEEE
T ss_pred HHHHHHHCCCeEEEEEE
Confidence 66777888888777654
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.1e-11 Score=103.66 Aligned_cols=134 Identities=10% Similarity=0.037 Sum_probs=93.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHh----hhCC---CceEEeccCCcC-----CCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVI----KNAP---CVEHVEGDMFVN-----VPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i----~~a~---ri~~~~gd~~~~-----~p~~-D~i~~~~ 242 (345)
.....+|||||||+|.++..+++..++.+++++|+ |.++ +.++ ++.++.+|+.++ ++.. |+|++.
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~- 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLIYQD- 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEEEEC-
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccccceeEEEEe-
Confidence 55667999999999999999999988779999999 6543 3333 788888998763 2233 999886
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH----HHH
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF----KAL 318 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~----~~l 318 (345)
+.+ .++...+|+++++.||| ||++++. -...+ .+ .. .+.+++ .+.
T Consensus 134 ~~~---~~~~~~~l~~~~r~Lkp---gG~l~i~-~~~~~--------------~~-----~~-----~~~~~~~~~~~~~ 182 (210)
T 1nt2_A 134 IAQ---KNQIEILKANAEFFLKE---KGEVVIM-VKARS--------------ID-----ST-----AEPEEVFKSVLKE 182 (210)
T ss_dssp CCS---TTHHHHHHHHHHHHEEE---EEEEEEE-EEHHH--------------HC-----TT-----SCHHHHHHHHHHH
T ss_pred ccC---hhHHHHHHHHHHHHhCC---CCEEEEE-EecCC--------------cc-----cc-----CCHHHHHHHHHHH
Confidence 332 23445669999999999 9999888 21100 00 00 112232 123
Q ss_pred HHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 319 AMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 319 l~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
++++ |++++...... .+.++.++|
T Consensus 183 l~~~-f~~~~~~~~~p~~~~h~~~~~~~ 209 (210)
T 1nt2_A 183 MEGD-FKIVKHGSLMPYHRDHIFIHAYR 209 (210)
T ss_dssp HHTT-SEEEEEEECTTTCTTEEEEEEEE
T ss_pred HHhh-cEEeeeecCCCCCCCcEEEEEEc
Confidence 8888 99999887743 567888776
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.6e-12 Score=108.61 Aligned_cols=96 Identities=13% Similarity=0.041 Sum_probs=81.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D~i~~~~vlh~ 246 (345)
....+|||||||+|.++..+++..+. +++++|+ +.+++.++ +++++.+|+.+ +++.+ |+|++..++|+
T Consensus 41 ~~~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~~~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~~ 119 (215)
T 2pxx_A 41 RPEDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDA 119 (215)
T ss_dssp CTTCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTTTCTTCEEEECCTTSCCSCSSCEEEEEEESHHHH
T ss_pred CCCCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcccCCCcEEEEcchhcCCCCCCcccEEEECcchhh
Confidence 45579999999999999999998765 8999999 77777654 68999999988 66643 99999999977
Q ss_pred CC-------------hhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 247 WS-------------DEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 247 ~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+. .++..++|+++++.|+| ||++++. +.
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~-~~ 160 (215)
T 2pxx_A 120 LLAGERDPWTVSSEGVHTVDQVLSEVSRVLVP---GGRFISM-TS 160 (215)
T ss_dssp HTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ES
T ss_pred hccccccccccccchhHHHHHHHHHHHHhCcC---CCEEEEE-eC
Confidence 65 44567899999999999 9999999 54
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.26 E-value=8.3e-12 Score=107.24 Aligned_cols=87 Identities=11% Similarity=0.080 Sum_probs=72.7
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~~ 247 (345)
..+|||||||+|.++..+++.+|+.+++++|. +.+++.++ +++++.+|+.+..+. . |+|++..+ +
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~~-~-- 142 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF-A-- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS-S--
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEecc-C--
Confidence 57999999999999999999999999999998 77777655 489999999884443 3 99987543 2
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ ...+++++++.|+| ||++++.
T Consensus 143 -~--~~~~l~~~~~~L~~---gG~l~~~ 164 (207)
T 1jsx_A 143 -S--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEE
Confidence 2 35789999999999 9998887
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-11 Score=116.33 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=84.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcCCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~~p~~ 235 (345)
.+++.++ .....+|||+|||+|.++..+++++|..+++++|. +.+++.++ +++++.+|++++++.+
T Consensus 213 ~ll~~l~-~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~~~ 291 (375)
T 4dcm_A 213 FFMQHLP-ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPF 291 (375)
T ss_dssp HHHHTCC-CSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCCTT
T ss_pred HHHHhCc-ccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCCCC
Confidence 4566666 44458999999999999999999999999999999 77887666 3778999999977743
Q ss_pred --CEEEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+++..+|+ .++....++|+++++.|+| ||+++|+
T Consensus 292 ~fD~Ii~nppfh~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~iv 333 (375)
T 4dcm_A 292 RFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKI---NGELYIV 333 (375)
T ss_dssp CEEEEEECCCC-------CCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CeeEEEECCCcccCcccCHHHHHHHHHHHHHhCCC---CcEEEEE
Confidence 99999999885 4455666899999999999 9999998
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.4e-11 Score=103.86 Aligned_cols=117 Identities=20% Similarity=0.087 Sum_probs=90.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC--C-
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS--G- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~--~- 235 (345)
+++.++ .....+|||+|||+|.++..+++.. .+++++|. +.+++.++ +++++.+|+.++++. .
T Consensus 25 ~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 101 (192)
T 1l3i_A 25 IMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPDI 101 (192)
T ss_dssp HHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCCE
T ss_pred HHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccCCCC
Confidence 444455 5667899999999999999999887 78999998 77776554 678999998774442 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++..++|++ ..+|+++++.|+| ||++++. .... .+..++
T Consensus 102 D~v~~~~~~~~~-----~~~l~~~~~~l~~---gG~l~~~-~~~~-----------------------------~~~~~~ 143 (192)
T 1l3i_A 102 DIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVT-AILL-----------------------------ETKFEA 143 (192)
T ss_dssp EEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEE-ECBH-----------------------------HHHHHH
T ss_pred CEEEECCchHHH-----HHHHHHHHHhcCC---CcEEEEE-ecCc-----------------------------chHHHH
Confidence 999999887653 5789999999999 9999888 3210 014567
Q ss_pred HHHHHHCCCCce
Q 044482 316 KALAMAAGFGTI 327 (345)
Q Consensus 316 ~~ll~~aGf~~~ 327 (345)
.+++++.||.+.
T Consensus 144 ~~~l~~~g~~~~ 155 (192)
T 1l3i_A 144 MECLRDLGFDVN 155 (192)
T ss_dssp HHHHHHTTCCCE
T ss_pred HHHHHHCCCceE
Confidence 899999999543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.2e-12 Score=116.25 Aligned_cols=104 Identities=14% Similarity=0.172 Sum_probs=86.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~ 237 (345)
..+++.++ .....+|||||||+|.++..+++++|+.+++++|. +.+++.++ +++++.+|+++..+.. |+
T Consensus 186 ~~ll~~l~-~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~ 264 (343)
T 2pjd_A 186 QLLLSTLT-PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEVKGRFDM 264 (343)
T ss_dssp HHHHHHSC-TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTCCSCEEE
T ss_pred HHHHHhcC-cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccccCCeeE
Confidence 34556664 33456899999999999999999999999999999 77787766 4678899998744444 99
Q ss_pred EEecccccc---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLN---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+++.++|+ ++.+...++|+++++.|+| ||+++++
T Consensus 265 Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~ 302 (343)
T 2pjd_A 265 IISNPPFHDGMQTSLDAAQTLIRGAVRHLNS---GGELRIV 302 (343)
T ss_dssp EEECCCCCSSSHHHHHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred EEECCCcccCccCCHHHHHHHHHHHHHhCCC---CcEEEEE
Confidence 999999986 3556678999999999999 9999998
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.24 E-value=8.8e-13 Score=117.35 Aligned_cols=142 Identities=11% Similarity=0.026 Sum_probs=94.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCC----cCCC----CC-CEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMF----VNVP----SG-QAI 238 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~----~~~p----~~-D~i 238 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.|+ +++++.+|+. ++++ .. |+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 456899999999999999999988899999999 88887665 4899999953 3444 23 999
Q ss_pred EeccccccCCh-------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC
Q 044482 239 FTKSVLLNWSD-------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP 305 (345)
Q Consensus 239 ~~~~vlh~~~d-------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 305 (345)
+++-.+|.... +....+++++++.|+| ||++.++ +.+.... ........++...
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Lkp---gG~l~~~-~~~~~~~--------~~~l~~~g~~~~~- 211 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAE---GGELEFV-KRIIHDS--------LQLKKRLRWYSCM- 211 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHH---HTHHHHH-HHHHHHH--------HHHGGGBSCEEEE-
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEec---CCEEEEE-HHHHHHH--------HhcccceEEEEEC-
Confidence 99866665431 1123578899999999 9998888 6543210 0000000111111
Q ss_pred CCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.+...+.+++.++++++||+.+++....
T Consensus 212 ~~~~~~~~~~~~~l~~~Gf~~v~~~~~~ 239 (254)
T 2h00_A 212 LGKKCSLAPLKEELRIQGVPKVTYTEFC 239 (254)
T ss_dssp ESSTTSHHHHHHHHHHTTCSEEEEEEEE
T ss_pred CCChhHHHHHHHHHHHcCCCceEEEEEe
Confidence 2344556899999999999998876663
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-11 Score=106.91 Aligned_cols=123 Identities=12% Similarity=0.055 Sum_probs=97.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~- 235 (345)
.++..++ .....+|||+|||+|.++..+++. .|..+++++|+ +.+++.|+ +++++.+|+.+.++++
T Consensus 84 ~i~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 162 (255)
T 3mb5_A 84 LIVAYAG-ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEEN 162 (255)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCS
T ss_pred HHHHhhC-CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCC
Confidence 4556666 667789999999999999999999 88999999999 78877665 4999999999877754
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|+|++ ++++. ..+|+++++.|+| ||++++. .... . ...+
T Consensus 163 ~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~----------------------~-------~~~~ 202 (255)
T 3mb5_A 163 VDHVIL-----DLPQP--ERVVEHAAKALKP---GGFFVAY-TPCS----------------------N-------QVMR 202 (255)
T ss_dssp EEEEEE-----CSSCG--GGGHHHHHHHEEE---EEEEEEE-ESSH----------------------H-------HHHH
T ss_pred cCEEEE-----CCCCH--HHHHHHHHHHcCC---CCEEEEE-ECCH----------------------H-------HHHH
Confidence 99987 34544 4689999999999 9999888 3210 0 1456
Q ss_pred HHHHHHHCC--CCceEEEec
Q 044482 315 FKALAMAAG--FGTIKVICR 332 (345)
Q Consensus 315 ~~~ll~~aG--f~~~~~~~~ 332 (345)
+.++++++| |..+++...
T Consensus 203 ~~~~l~~~g~~f~~~~~~e~ 222 (255)
T 3mb5_A 203 LHEKLREFKDYFMKPRTINV 222 (255)
T ss_dssp HHHHHHHTGGGBSCCEEECC
T ss_pred HHHHHHHcCCCccccEEEEE
Confidence 778899999 988877543
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7e-11 Score=103.07 Aligned_cols=139 Identities=13% Similarity=0.078 Sum_probs=96.9
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC-----CCCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN-----VPSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~-----~p~~-D~i~~~ 241 (345)
.....+|||+|||+|.++..++++. |..+++++|. +.+++.+. +++++.+|+.+. .+.. |+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 5566799999999999999999885 6689999999 65554432 799999999872 1233 999865
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.. ..+....+++++++.|+| ||++++. -.........+ ....+.+++.++ ++
T Consensus 151 ~~----~~~~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~-------------------~~~~~~~~l~~l-~~ 202 (227)
T 1g8a_A 151 VA----QPTQAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTKE-------------------PEQVFREVEREL-SE 202 (227)
T ss_dssp CC----STTHHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTSC-------------------HHHHHHHHHHHH-HT
T ss_pred CC----CHhHHHHHHHHHHHhcCC---CCEEEEE-EecCCCCCCCC-------------------hhhhhHHHHHHH-Hh
Confidence 43 233334569999999999 9998886 22111110000 001225677777 77
Q ss_pred CCCCceEEEecCCc---eEEEEEEcC
Q 044482 322 AGFGTIKVICRSYC---YWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~~---~~vi~~~k~ 344 (345)
+ |++++...+... +.++.++|.
T Consensus 203 ~-f~~~~~~~~~~~~~~~~~~~~~~~ 227 (227)
T 1g8a_A 203 Y-FEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp T-SEEEEEEECTTTSSSEEEEEEECC
T ss_pred h-ceeeeEeccCcccCCCEEEEEEeC
Confidence 8 999998887644 778887763
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.5e-11 Score=109.67 Aligned_cols=124 Identities=15% Similarity=0.150 Sum_probs=96.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C-CEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-QAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-D~i~~~~vlh~ 246 (345)
....+|||+|||+|.++..+++..+ +++++|+ |.+++.++ .+++..+|+.+.++. . |+|+++...|
T Consensus 119 ~~~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~~~~~~fD~Vv~n~~~~- 195 (254)
T 2nxc_A 119 RPGDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLYAE- 195 (254)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECCHH-
T ss_pred CCCCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhcCcCCCCCEEEECCcHH-
Confidence 3557999999999999999998765 8999999 88887766 278999998875543 3 9999865543
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCc
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGT 326 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~ 326 (345)
....+++++++.|+| ||++++. +... .+.+++.++++++||++
T Consensus 196 ----~~~~~l~~~~~~Lkp---gG~lils-~~~~-----------------------------~~~~~v~~~l~~~Gf~~ 238 (254)
T 2nxc_A 196 ----LHAALAPRYREALVP---GGRALLT-GILK-----------------------------DRAPLVREAMAGAGFRP 238 (254)
T ss_dssp ----HHHHHHHHHHHHEEE---EEEEEEE-EEEG-----------------------------GGHHHHHHHHHHTTCEE
T ss_pred ----HHHHHHHHHHHHcCC---CCEEEEE-eecc-----------------------------CCHHHHHHHHHHCCCEE
Confidence 346899999999999 9999987 4321 02678899999999999
Q ss_pred eEEEecCCceEEEEEE
Q 044482 327 IKVICRSYCYWVIEFY 342 (345)
Q Consensus 327 ~~~~~~~~~~~vi~~~ 342 (345)
+++........ +.++
T Consensus 239 ~~~~~~~~W~~-l~~~ 253 (254)
T 2nxc_A 239 LEEAAEGEWVL-LAYG 253 (254)
T ss_dssp EEEEEETTEEE-EEEE
T ss_pred EEEeccCCeEE-EEEE
Confidence 98877655433 3444
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.21 E-value=2.3e-11 Score=101.85 Aligned_cols=111 Identities=12% Similarity=-0.035 Sum_probs=85.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CC---CCC--CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NV---PSG--QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~---p~~--D~i~~~~vl 244 (345)
.....+|||||||. +.+|. +.|++.++ +++++.+|+.+ +. +++ |+|++.+++
T Consensus 10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l 73 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLVP 73 (176)
T ss_dssp CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCST
T ss_pred CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECChh
Confidence 55678999999996 23887 78888766 58999999987 55 543 999999999
Q ss_pred ccC-ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 245 LNW-SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 245 h~~-~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
|++ ++. .++|+++++.||| ||++++. +........ ....++.++|.++|+++|
T Consensus 74 ~~~~~~~--~~~l~~~~r~Lkp---gG~l~~~-~~~~~~~~~--------------------~~~~~~~~~~~~~l~~aG 127 (176)
T 2ld4_A 74 GSTTLHS--AEILAEIARILRP---GGCLFLK-EPVETAVDN--------------------NSKVKTASKLCSALTLSG 127 (176)
T ss_dssp TCCCCCC--HHHHHHHHHHEEE---EEEEEEE-EEEESSSCS--------------------SSSSCCHHHHHHHHHHTT
T ss_pred hhcccCH--HHHHHHHHHHCCC---CEEEEEE-ccccccccc--------------------ccccCCHHHHHHHHHHCC
Confidence 999 665 5899999999999 9999997 554221100 122367899999999999
Q ss_pred CCceEEEe
Q 044482 324 FGTIKVIC 331 (345)
Q Consensus 324 f~~~~~~~ 331 (345)
| +. +..
T Consensus 128 f-i~-~~~ 133 (176)
T 2ld4_A 128 L-VE-VKE 133 (176)
T ss_dssp C-EE-EEE
T ss_pred C-cE-eec
Confidence 9 43 543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.8e-11 Score=101.76 Aligned_cols=118 Identities=14% Similarity=0.066 Sum_probs=90.9
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~ 235 (345)
+++.++ .....+|||||||+|.++..+++. ..+++++|+ +.+++.|+ +++++.+|+.+.++ ..
T Consensus 47 ~l~~l~-~~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~ 123 (204)
T 3njr_A 47 TLAALA-PRRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLP 123 (204)
T ss_dssp HHHHHC-CCTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCC
T ss_pred HHHhcC-CCCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCC
Confidence 445555 666789999999999999999988 779999999 88877654 58999999988433 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
|+|++...+ + .. +++++++.|+| ||++++. .... .+..++
T Consensus 124 D~v~~~~~~----~--~~-~l~~~~~~Lkp---gG~lv~~-~~~~-----------------------------~~~~~~ 163 (204)
T 3njr_A 124 EAVFIGGGG----S--QA-LYDRLWEWLAP---GTRIVAN-AVTL-----------------------------ESETLL 163 (204)
T ss_dssp SEEEECSCC----C--HH-HHHHHHHHSCT---TCEEEEE-ECSH-----------------------------HHHHHH
T ss_pred CEEEECCcc----c--HH-HHHHHHHhcCC---CcEEEEE-ecCc-----------------------------ccHHHH
Confidence 999987744 2 23 89999999999 9999888 3210 024567
Q ss_pred HHHHHHCCCCceEEE
Q 044482 316 KALAMAAGFGTIKVI 330 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~ 330 (345)
.+++++.|+++.++.
T Consensus 164 ~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 164 TQLHARHGGQLLRID 178 (204)
T ss_dssp HHHHHHHCSEEEEEE
T ss_pred HHHHHhCCCcEEEEE
Confidence 888999998877753
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.1e-11 Score=102.84 Aligned_cols=98 Identities=16% Similarity=0.157 Sum_probs=77.5
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C-CCC-C-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N-VPS-G-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~-~p~-~-D~i~~ 240 (345)
.....+|||+|||+|.++..+++++ |..+++++|+ +.+++.++ +++++.+|+.+ + ..+ . |+|++
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~ 99 (197)
T 3eey_A 20 VKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMF 99 (197)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEE
T ss_pred CCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEE
Confidence 4456799999999999999999986 6789999999 77877664 68999999876 2 333 3 99998
Q ss_pred ccccc-------cCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 241 KSVLL-------NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 241 ~~vlh-------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
...+. ....+...++++++++.|+| ||++++. ..
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~---gG~l~~~-~~ 140 (197)
T 3eey_A 100 NLGYLPSGDHSISTRPETTIQALSKAMELLVT---GGIITVV-IY 140 (197)
T ss_dssp EESBCTTSCTTCBCCHHHHHHHHHHHHHHEEE---EEEEEEE-EC
T ss_pred cCCcccCcccccccCcccHHHHHHHHHHhCcC---CCEEEEE-Ec
Confidence 86551 11233456799999999999 9999998 54
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.9e-11 Score=102.01 Aligned_cols=140 Identities=11% Similarity=0.054 Sum_probs=92.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc--CCCC-C-CEEEec-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV--NVPS-G-QAIFTK- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~--~~p~-~-D~i~~~- 241 (345)
.....+|||||||+|.++..++++ ..+++++|+ |.+++.|+ +++++.+|+.. ..++ . |+|++.
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~~ 97 (185)
T 3mti_A 20 LDDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFNL 97 (185)
T ss_dssp CCTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEeC
Confidence 345679999999999999999988 678999999 88888765 58888877655 2343 3 999876
Q ss_pred cccccC------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHH
Q 044482 242 SVLLNW------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEF 315 (345)
Q Consensus 242 ~vlh~~------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~ 315 (345)
..+++- ..+....+|+++++.|+| ||++++. .....+.... . .....+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~i~-~~~~~~~~~~----~-----------------~~~~~~~ 152 (185)
T 3mti_A 98 GYLPSADKSVITKPHTTLEAIEKILDRLEV---GGRLAIM-IYYGHDGGDM----E-----------------KDAVLEY 152 (185)
T ss_dssp C-----------CHHHHHHHHHHHHHHEEE---EEEEEEE-EC------CH----H-----------------HHHHHHH
T ss_pred CCCCCcchhcccChhhHHHHHHHHHHhcCC---CcEEEEE-EeCCCCCCHH----H-----------------HHHHHHH
Confidence 333320 234557889999999999 9999988 5422111100 0 0113445
Q ss_pred HHHHHHCCCCceEEEecCC---ceEEEEEEc
Q 044482 316 KALAMAAGFGTIKVICRSY---CYWVIEFYK 343 (345)
Q Consensus 316 ~~ll~~aGf~~~~~~~~~~---~~~vi~~~k 343 (345)
.+.+...+|.+.+...... ...++...|
T Consensus 153 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~ 183 (185)
T 3mti_A 153 VIGLDQRVFTAMLYQPLNQINTPPFLVMLEK 183 (185)
T ss_dssp HHHSCTTTEEEEEEEESSCSSCCCEEEEEEE
T ss_pred HHhCCCceEEEEEehhhccCCCCCeEEEEEe
Confidence 5566667788877766632 234554444
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-10 Score=101.21 Aligned_cols=126 Identities=13% Similarity=0.039 Sum_probs=99.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC---CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS---GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~---~D~i~~~~vl 244 (345)
...+|+|||||+|.++..+++..|..+++.+|+ |..++.|+ ++++..+|.+++++. .|+|++..+-
T Consensus 15 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG~G 94 (225)
T 3kr9_A 15 QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAGMG 94 (225)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcCCC
Confidence 457999999999999999999999999999999 77777665 689999999987662 3999887653
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||..+.+.|+| +|++++. -. . .....+++|.+.||
T Consensus 95 ----g~~i~~Il~~~~~~L~~---~~~lVlq-~~----~---------------------------~~~~vr~~L~~~Gf 135 (225)
T 3kr9_A 95 ----GRLIARILEEGLGKLAN---VERLILQ-PN----N---------------------------REDDLRIWLQDHGF 135 (225)
T ss_dssp ----HHHHHHHHHHTGGGCTT---CCEEEEE-ES----S---------------------------CHHHHHHHHHHTTE
T ss_pred ----hHHHHHHHHHHHHHhCC---CCEEEEE-CC----C---------------------------CHHHHHHHHHHCCC
Confidence 34457899999999999 9988777 11 0 15667899999999
Q ss_pred CceEEEec--CC-ceEEEEEEc
Q 044482 325 GTIKVICR--SY-CYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~--~~-~~~vi~~~k 343 (345)
.+++..-+ .+ .+.+|.+.+
T Consensus 136 ~i~~e~lv~e~~~~Yeii~~~~ 157 (225)
T 3kr9_A 136 QIVAESILEEAGKFYEILVVEA 157 (225)
T ss_dssp EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 99876533 23 466777764
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=1.1e-10 Score=105.40 Aligned_cols=91 Identities=11% Similarity=0.133 Sum_probs=76.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG-QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~-D~i~~~~vl 244 (345)
.....+|||||||+|.++..++.+.++.+++++|+ |++++.|+ +++++.+|+.+ +| .. |+|++...
T Consensus 120 l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~-l~d~~FDvV~~~a~- 197 (298)
T 3fpf_A 120 FRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETV-IDGLEFDVLMVAAL- 197 (298)
T ss_dssp CCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGG-GGGCCCSEEEECTT-
T ss_pred CCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhh-CCCCCcCEEEECCC-
Confidence 66789999999999988777777778999999999 88988776 69999999987 33 33 99998655
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEec
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSK 277 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d 277 (345)
.++ ..++++++++.|+| ||++++. +
T Consensus 198 --~~d--~~~~l~el~r~LkP---GG~Lvv~-~ 222 (298)
T 3fpf_A 198 --AEP--KRRVFRNIHRYVDT---ETRIIYR-T 222 (298)
T ss_dssp --CSC--HHHHHHHHHHHCCT---TCEEEEE-E
T ss_pred --ccC--HHHHHHHHHHHcCC---CcEEEEE-c
Confidence 233 35899999999999 9999998 5
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3e-11 Score=110.55 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=96.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc-CC--CC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV-NV--PS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~-~~--p~-~-D~i 238 (345)
.+..+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+ .. +. . |+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 3557999999999999999998877889999999 77776543 68999999987 22 33 3 999
Q ss_pred EeccccccCChhHH--HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 239 FTKSVLLNWSDEQC--LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 239 ~~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
++....+.+++... ..++++++++|+| ||.+++. .. .+ . .+ .....++.
T Consensus 174 i~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~-~~----~~---~-------~~-----------~~~~~~~~ 224 (304)
T 3bwc_A 174 IIDTTDPAGPASKLFGEAFYKDVLRILKP---DGICCNQ-GE----SI---W-------LD-----------LELIEKMS 224 (304)
T ss_dssp EEECC---------CCHHHHHHHHHHEEE---EEEEEEE-EC----CT---T-------TC-----------HHHHHHHH
T ss_pred EECCCCccccchhhhHHHHHHHHHHhcCC---CcEEEEe-cC----Cc---c-------cc-----------hHHHHHHH
Confidence 99877766654433 5789999999999 9998887 21 10 0 00 01356788
Q ss_pred HHHHHCCCCceEEEec--C----CceEEEEEEc
Q 044482 317 ALAMAAGFGTIKVICR--S----YCYWVIEFYK 343 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~--~----~~~~vi~~~k 343 (345)
+.++++||..+++... + +..+.+.+.|
T Consensus 225 ~~l~~~GF~~v~~~~~~vP~yp~g~w~f~~as~ 257 (304)
T 3bwc_A 225 RFIRETGFASVQYALMHVPTYPCGSIGTLVCSK 257 (304)
T ss_dssp HHHHHHTCSEEEEEECCCTTSTTSCCEEEEEES
T ss_pred HHHHhCCCCcEEEEEeecccccCcceEEEEEeC
Confidence 9999999998887654 2 2334555554
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=1.6e-11 Score=106.96 Aligned_cols=94 Identities=9% Similarity=0.050 Sum_probs=74.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC----CCCC--CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN----VPSG--QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~----~p~~--D~i~~~~ 242 (345)
...+|||||||+|.++..+++++|+.+++++|+ +.+++.++ +++++.+|+.+. ++++ |.|++..
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 457899999999999999999999999999999 77776654 799999998762 5554 8888774
Q ss_pred ccccCChhHH------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQC------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.......... ..+++++++.|+| ||.+++.
T Consensus 114 ~~p~~~~~~~~rr~~~~~~l~~~~r~Lkp---GG~l~i~ 149 (218)
T 3dxy_A 114 PDPWHKARHNKRRIVQVPFAELVKSKLQL---GGVFHMA 149 (218)
T ss_dssp CCCCCSGGGGGGSSCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCccchhhhhhhhhhHHHHHHHHHHcCC---CcEEEEE
Confidence 4432222211 2489999999999 9999888
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-11 Score=104.05 Aligned_cols=94 Identities=18% Similarity=0.187 Sum_probs=73.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~--D~i~~~~v 243 (345)
...+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ +++++.+|+.+ + ++++ |.|++...
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~~ 117 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 117 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEECC
Confidence 346899999999999999999999999999999 77777654 68999999987 3 5544 88876543
Q ss_pred cccCChhH------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+..... ...+|+++++.|+| ||.|++.
T Consensus 118 ~p~~~~~~~~~rl~~~~~l~~~~~~Lkp---gG~l~~~ 152 (213)
T 2fca_A 118 DPWPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFK 152 (213)
T ss_dssp CCCCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEE
T ss_pred CCCcCccccccccCcHHHHHHHHHHcCC---CCEEEEE
Confidence 32111110 24789999999999 9999887
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.6e-10 Score=103.11 Aligned_cols=133 Identities=11% Similarity=0.065 Sum_probs=99.7
Q ss_pred cc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-C--CCC-C-CEEE
Q 044482 177 FK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-N--VPS-G-QAIF 239 (345)
Q Consensus 177 ~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~--~p~-~-D~i~ 239 (345)
.. ...+|||+|||+|.++..++++.+. +++++|+ +.+++.|+ |++++.+|+.+ . ++. . |+|+
T Consensus 46 ~~~~~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii 124 (259)
T 3lpm_A 46 LPIRKGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVT 124 (259)
T ss_dssp CCSSCCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred CCCCCCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence 55 6789999999999999999999876 9999999 77877665 59999999988 3 333 3 9999
Q ss_pred eccccccC------------------ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhh
Q 044482 240 TKSVLLNW------------------SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMY 301 (345)
Q Consensus 240 ~~~vlh~~------------------~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~ 301 (345)
++-.++.. .......+++.+.+.|+| ||+++++ - +.
T Consensus 125 ~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~-~---~~------------------- 178 (259)
T 3lpm_A 125 CNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQ---GGKANFV-H---RP------------------- 178 (259)
T ss_dssp ECCCC-----------------------HHHHHHHHHHHHHEEE---EEEEEEE-E---CT-------------------
T ss_pred ECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccC---CcEEEEE-E---cH-------------------
Confidence 96444322 113346799999999999 9999887 1 10
Q ss_pred hhcCCCccCCHHHHHHHHHHCCCCceEEEecC------CceEEEEEEcC
Q 044482 302 DLFPQAKGRTAGEFKALAMAAGFGTIKVICRS------YCYWVIEFYKP 344 (345)
Q Consensus 302 ~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~------~~~~vi~~~k~ 344 (345)
....++.+++++.||...++..+. ....+++++|.
T Consensus 179 --------~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~~~k~ 219 (259)
T 3lpm_A 179 --------ERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKD 219 (259)
T ss_dssp --------TTHHHHHHHHHHTTEEEEEEEEEESSTTSCCSEEEEEEEET
T ss_pred --------HHHHHHHHHHHHCCCceEEEEEeecCCCCCcEEEEEEEEeC
Confidence 024567888999999988876652 23577888764
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=107.04 Aligned_cols=130 Identities=10% Similarity=-0.014 Sum_probs=97.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC----CC-CEEEec
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP----SG-QAIFTK 241 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p----~~-D~i~~~ 241 (345)
....+|||||||+|..+..++..+|+.+++++|. +.+++.++ +++++.+|+.+ +.. .. |+|+++
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 4567999999999999999999999999999998 77777665 68999999877 331 23 999987
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.+- + ...+++.+.+.|+| ||++++. ..... . -...++.+.+++
T Consensus 159 a~~----~--~~~ll~~~~~~Lkp---gG~l~~~-~g~~~------~---------------------~e~~~~~~~l~~ 201 (249)
T 3g89_A 159 AVA----P--LCVLSELLLPFLEV---GGAAVAM-KGPRV------E---------------------EELAPLPPALER 201 (249)
T ss_dssp SSC----C--HHHHHHHHGGGEEE---EEEEEEE-ECSCC------H---------------------HHHTTHHHHHHH
T ss_pred CcC----C--HHHHHHHHHHHcCC---CeEEEEE-eCCCc------H---------------------HHHHHHHHHHHH
Confidence 642 2 25789999999999 9999988 32100 0 002346778889
Q ss_pred CCCCceEEEec--C---CceEEEEEEcC
Q 044482 322 AGFGTIKVICR--S---YCYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~--~---~~~~vi~~~k~ 344 (345)
.||++.++... + ....++...|.
T Consensus 202 ~G~~~~~~~~~~~p~~~~~R~l~~~~k~ 229 (249)
T 3g89_A 202 LGGRLGEVLALQLPLSGEARHLVVLEKT 229 (249)
T ss_dssp HTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred cCCeEEEEEEeeCCCCCCcEEEEEEEeC
Confidence 99999888655 2 23567777664
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.9e-10 Score=100.21 Aligned_cols=126 Identities=13% Similarity=0.002 Sum_probs=100.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~--~D~i~~~~vl 244 (345)
...+|+|||||+|.++..+++..|..+++.+|+ |..++.|+ ++++..+|.++.++ . .|+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~IviaGmG 100 (230)
T 3lec_A 21 KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITICGMG 100 (230)
T ss_dssp TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEeCCc
Confidence 457999999999999999999999889999999 77777766 69999999999554 2 3999887664
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||....+.|++ +|++++. -. . ..+++++||.+.||
T Consensus 101 ----g~lI~~IL~~~~~~l~~---~~~lIlq-p~-------------------------~------~~~~lr~~L~~~Gf 141 (230)
T 3lec_A 101 ----GRLIADILNNDIDKLQH---VKTLVLQ-PN-------------------------N------REDDLRKWLAANDF 141 (230)
T ss_dssp ----HHHHHHHHHHTGGGGTT---CCEEEEE-ES-------------------------S------CHHHHHHHHHHTTE
T ss_pred ----hHHHHHHHHHHHHHhCc---CCEEEEE-CC-------------------------C------ChHHHHHHHHHCCC
Confidence 34567899999999999 9988887 10 0 15678999999999
Q ss_pred CceEEEec---CCceEEEEEEc
Q 044482 325 GTIKVICR---SYCYWVIEFYK 343 (345)
Q Consensus 325 ~~~~~~~~---~~~~~vi~~~k 343 (345)
.+++..-+ .-.+.+|.+.+
T Consensus 142 ~i~~E~lv~e~~~~Yeii~~~~ 163 (230)
T 3lec_A 142 EIVAEDILTENDKRYEILVVKH 163 (230)
T ss_dssp EEEEEEEEEC--CEEEEEEEEE
T ss_pred EEEEEEEEEECCEEEEEEEEEe
Confidence 99886543 23567887765
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-10 Score=103.43 Aligned_cols=106 Identities=16% Similarity=0.133 Sum_probs=83.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC-----C--------------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP-----C-------------------- 220 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~-----r-------------------- 220 (345)
.+++.+. -....+|||+|||+|.++..+++. +|..+++++|+ +.+++.|+ .
T Consensus 42 ~~l~~~~-~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (250)
T 1o9g_A 42 RALARLP-GDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFG 120 (250)
T ss_dssp HHHHTSS-CCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhcc-cCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcc
Confidence 3444443 234579999999999999999998 78889999999 88877665 2
Q ss_pred -------------ce-------------EEeccCCcCC------CC-C-CEEEeccccccCCh-------hHHHHHHHHH
Q 044482 221 -------------VE-------------HVEGDMFVNV------PS-G-QAIFTKSVLLNWSD-------EQCLKILKNC 259 (345)
Q Consensus 221 -------------i~-------------~~~gd~~~~~------p~-~-D~i~~~~vlh~~~d-------~~~~~iL~~~ 259 (345)
++ ++.+|++++. +. . |+|+++..+++..+ +....+++++
T Consensus 121 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~ 200 (250)
T 1o9g_A 121 KPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSL 200 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHH
Confidence 56 9999999854 43 4 99999877665543 5667899999
Q ss_pred HhhCCCCCCCcEEEEEeccC
Q 044482 260 YDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 260 ~~aL~p~~~gG~lli~~d~~ 279 (345)
++.|+| ||+++++ +..
T Consensus 201 ~~~Lkp---gG~l~~~-~~~ 216 (250)
T 1o9g_A 201 ASALPA---HAVIAVT-DRS 216 (250)
T ss_dssp HHHSCT---TCEEEEE-ESS
T ss_pred HHhcCC---CcEEEEe-Ccc
Confidence 999999 9999988 544
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.4e-11 Score=98.08 Aligned_cols=117 Identities=14% Similarity=0.038 Sum_probs=89.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D 236 (345)
.+++.++ .....+|||+|||+|.++..+++ +..+++++|. +.+++.++ +++++.+|+.+++++ . |
T Consensus 26 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D 102 (183)
T 2yxd_A 26 VSIGKLN-LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVLDKLEFN 102 (183)
T ss_dssp HHHHHHC-CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHGGGCCCS
T ss_pred HHHHHcC-CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccccCCCCc
Confidence 3445555 55667999999999999999998 7889999998 77777655 689999999886653 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|++..+ .....+++++++. | ||++++. +... . +..++.
T Consensus 103 ~i~~~~~------~~~~~~l~~~~~~--~---gG~l~~~-~~~~----------------------~-------~~~~~~ 141 (183)
T 2yxd_A 103 KAFIGGT------KNIEKIIEILDKK--K---INHIVAN-TIVL----------------------E-------NAAKII 141 (183)
T ss_dssp EEEECSC------SCHHHHHHHHHHT--T---CCEEEEE-ESCH----------------------H-------HHHHHH
T ss_pred EEEECCc------ccHHHHHHHHhhC--C---CCEEEEE-eccc----------------------c-------cHHHHH
Confidence 9999988 2235788888888 8 9999998 4210 0 145678
Q ss_pred HHHHHCCCCceEE
Q 044482 317 ALAMAAGFGTIKV 329 (345)
Q Consensus 317 ~ll~~aGf~~~~~ 329 (345)
++++++||.+..+
T Consensus 142 ~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 142 NEFESRGYNVDAV 154 (183)
T ss_dssp HHHHHTTCEEEEE
T ss_pred HHHHHcCCeEEEE
Confidence 8999999866544
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-11 Score=111.52 Aligned_cols=103 Identities=14% Similarity=0.080 Sum_probs=83.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~- 235 (345)
..+++.+. .....+|||||||+|.++..++++ +..+++++|..++++.++ +++++.+|+.+ +.|..
T Consensus 40 ~~i~~~l~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~ 117 (348)
T 2y1w_A 40 RAILQNHT-DFKDKIVLDVGCGSGILSFFAAQA-GARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQV 117 (348)
T ss_dssp HHHHHTGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCE
T ss_pred HHHHhccc-cCCcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCce
Confidence 34556655 456679999999999999998875 567999999965665443 68999999988 66654
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..+++++..+.....+.++++.|+| ||++++.
T Consensus 118 D~Ivs~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 154 (348)
T 2y1w_A 118 DIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 154 (348)
T ss_dssp EEEEECCCBTTBTTTSHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEeCchhcCChHHHHHHHHHHHhhcCC---CeEEEEe
Confidence 999999999999888778889999999999 9988754
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-11 Score=108.38 Aligned_cols=110 Identities=9% Similarity=0.032 Sum_probs=84.1
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc--CCC-CC--CEEEeccccccC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV--NVP-SG--QAIFTKSVLLNW 247 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~--~~p-~~--D~i~~~~vlh~~ 247 (345)
....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +++ ++ |+|+++.
T Consensus 47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~~~fD~v~~~~----- 119 (226)
T 3m33_A 47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARANAPHADVYEWNGKGELPAGLGAPFGLIVSRR----- 119 (226)
T ss_dssp CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHCTTSEEEECCSCSSCCTTCCCCEEEEEEES-----
T ss_pred CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHhCCCceEEEcchhhccCCcCCCCEEEEEeCC-----
Confidence 34579999999999999999998 568999999 88888776 79999999976 444 33 9998871
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
+...+|+++++.|+| ||+++.. .. ..+.+++.++++++||+.+
T Consensus 120 ---~~~~~l~~~~~~Lkp---gG~l~~~-~~------------------------------~~~~~~~~~~l~~~Gf~~~ 162 (226)
T 3m33_A 120 ---GPTSVILRLPELAAP---DAHFLYV-GP------------------------------RLNVPEVPERLAAVGWDIV 162 (226)
T ss_dssp ---CCSGGGGGHHHHEEE---EEEEEEE-ES------------------------------SSCCTHHHHHHHHTTCEEE
T ss_pred ---CHHHHHHHHHHHcCC---CcEEEEe-CC------------------------------cCCHHHHHHHHHHCCCeEE
Confidence 224679999999999 9988833 11 0123457778888888776
Q ss_pred EEEe
Q 044482 328 KVIC 331 (345)
Q Consensus 328 ~~~~ 331 (345)
++..
T Consensus 163 ~~~~ 166 (226)
T 3m33_A 163 AEDH 166 (226)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6543
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=5.5e-11 Score=115.32 Aligned_cols=104 Identities=13% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..+++ .|..+++++|+.++++.|+ +++++.+|+.+ ++|..
T Consensus 147 ~~~il~~l~-~~~~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~ 224 (480)
T 3b3j_A 147 QRAILQNHT-DFKDKIVLDVGCGSGILSFFAAQ-AGARKIYAVEASTMAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQ 224 (480)
T ss_dssp HHHHHHTGG-GTTTCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHHHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSC
T ss_pred HHHHHHhhh-hcCCCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHHHHHHHHHHHHHcCCCCcEEEEECchhhCccCCC
Confidence 445666665 55567999999999999998887 6778999999965766554 69999999998 66655
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++.+++....+.++++.|+| ||++++.
T Consensus 225 fD~Ivs~~~~~~~~~e~~~~~l~~~~~~Lkp---gG~li~~ 262 (480)
T 3b3j_A 225 VDIIISEPMGYMLFNERMLESYLHAKKYLKP---SGNMFPT 262 (480)
T ss_dssp EEEEECCCCHHHHTCHHHHHHHHHGGGGEEE---EEEEESC
T ss_pred eEEEEEeCchHhcCcHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 999999898999888888899999999999 9988753
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-10 Score=99.13 Aligned_cols=140 Identities=13% Similarity=0.056 Sum_probs=94.9
Q ss_pred cccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHh----hhCC---CceEEeccCCcCC-----CCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVI----KNAP---CVEHVEGDMFVNV-----PSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i----~~a~---ri~~~~gd~~~~~-----p~~-D~i~~~ 241 (345)
+....+|||+|||+|.++..+++. .|+.+++++|+ |.++ +.++ ++.++.+|+..+. +.. |+|++.
T Consensus 74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~Da~~~~~~~~~~~~~D~I~~d 153 (232)
T 3id6_C 74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLADARFPQSYKSVVENVDVLYVD 153 (232)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEECCTTCGGGTTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEcccccchhhhccccceEEEEec
Confidence 567789999999999999999987 56889999999 6553 3332 7999999987632 223 999876
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
-.. .++...+++.+++.|+| ||++++. -..... |.. . ...+ ..++..+.|++
T Consensus 154 ~a~----~~~~~il~~~~~~~Lkp---GG~lvis-ik~~~~--------------d~t---~--~~~e-~~~~~~~~L~~ 205 (232)
T 3id6_C 154 IAQ----PDQTDIAIYNAKFFLKV---NGDMLLV-IKARSI--------------DVT---K--DPKE-IYKTEVEKLEN 205 (232)
T ss_dssp CCC----TTHHHHHHHHHHHHEEE---EEEEEEE-EC------------------------C--CSSS-STTHHHHHHHH
T ss_pred CCC----hhHHHHHHHHHHHhCCC---CeEEEEE-EccCCc--------------ccC---C--CHHH-HHHHHHHHHHH
Confidence 433 23333455666779999 9999887 321110 100 0 1111 12345567788
Q ss_pred CCCCceEEEecCC---ceEEEEEEcC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~ 344 (345)
+||++++...+.+ .+.++.++++
T Consensus 206 ~gf~~~~~~~l~p~~~~h~~v~~~~~ 231 (232)
T 3id6_C 206 SNFETIQIINLDPYDKDHAIVLSKYK 231 (232)
T ss_dssp TTEEEEEEEECTTTCSSCEEEEEEEC
T ss_pred CCCEEEEEeccCCCcCceEEEEEEeC
Confidence 9999999988843 4888888764
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-11 Score=106.27 Aligned_cols=154 Identities=15% Similarity=0.125 Sum_probs=90.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----C--------ceEEe-ccCCcCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----C--------VEHVE-GDMFVNVPS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----r--------i~~~~-gd~~~~~p~ 234 (345)
.+++.++.-....+|||||||+|.++..++++ +..+++++|+ +.+++.+. + +.+.. .|+..+.+
T Consensus 27 ~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~-g~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 104 (232)
T 3opn_A 27 KALKEFHLEINGKTCLDIGSSTGGFTDVMLQN-GAKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRP- 104 (232)
T ss_dssp HHHHHTTCCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCC-
T ss_pred HHHHHcCCCCCCCEEEEEccCCCHHHHHHHhc-CCCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCC-
Confidence 45555551223468999999999999999987 3348999999 77776543 2 22222 22222112
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch-hhhhhhccchhhhhhcCCCccCCHH
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS-INRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|.+.+..++.++ .++|++++++|+| ||++++. - .+....... ........|.. ....+.+
T Consensus 105 -d~~~~D~v~~~l-----~~~l~~i~rvLkp---gG~lv~~-~--~p~~e~~~~~~~~~G~~~d~~-------~~~~~~~ 165 (232)
T 3opn_A 105 -SFTSIDVSFISL-----DLILPPLYEILEK---NGEVAAL-I--KPQFEAGREQVGKNGIIRDPK-------VHQMTIE 165 (232)
T ss_dssp -SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE-E--CHHHHSCHHHHC-CCCCCCHH-------HHHHHHH
T ss_pred -CEEEEEEEhhhH-----HHHHHHHHHhccC---CCEEEEE-E--CcccccCHHHhCcCCeecCcc-------hhHHHHH
Confidence 333333333333 4689999999999 9999887 2 110000000 00000000100 0123678
Q ss_pred HHHHHHHHCCCCceEEEecCC------ceEEEEEEc
Q 044482 314 EFKALAMAAGFGTIKVICRSY------CYWVIEFYK 343 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~~~------~~~vi~~~k 343 (345)
++.++++++||++..+...+- ...++-++|
T Consensus 166 ~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~~~~~ 201 (232)
T 3opn_A 166 KVLKTATQLGFSVKGLTFSPIKGGAGNVEFLVHLLK 201 (232)
T ss_dssp HHHHHHHHHTEEEEEEEECSSCBTTTBCCEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEccCCCCCCCHHHHHHHhh
Confidence 999999999999988865541 235555555
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=108.60 Aligned_cols=108 Identities=14% Similarity=0.092 Sum_probs=83.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------C-----------CceEEeccC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------P-----------CVEHVEGDM 228 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------~-----------ri~~~~gd~ 228 (345)
..+++.++ .....+|||||||+|.++..+++.+|..+++++|+ +.+++.| + +++++.+|.
T Consensus 232 ~~ml~~l~-l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~ 310 (433)
T 1u2z_A 232 SDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 310 (433)
T ss_dssp HHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCc
Confidence 44556665 66778999999999999999999988889999998 6665554 2 577888754
Q ss_pred Cc-C--C---C-CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 229 FV-N--V---P-SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 229 ~~-~--~---p-~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+. + + . ..|+|+++++++ . ++....|+++.+.|+| ||++++. +.+.+..
T Consensus 311 ~~~~~~~~~~~~~FDvIvvn~~l~--~-~d~~~~L~el~r~LKp---GG~lVi~-d~f~p~~ 365 (433)
T 1u2z_A 311 FVDNNRVAELIPQCDVILVNNFLF--D-EDLNKKVEKILQTAKV---GCKIISL-KSLRSLT 365 (433)
T ss_dssp STTCHHHHHHGGGCSEEEECCTTC--C-HHHHHHHHHHHTTCCT---TCEEEES-SCSSCTT
T ss_pred cccccccccccCCCCEEEEeCccc--c-ccHHHHHHHHHHhCCC---CeEEEEe-eccCCcc
Confidence 43 2 2 1 239999987773 2 3446789999999999 9999999 8887655
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.5e-10 Score=94.67 Aligned_cols=103 Identities=20% Similarity=0.151 Sum_probs=81.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCc-C--------CCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFV-N--------VPS-G-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~--------~p~-~-D 236 (345)
.+++.+.......+|||+|||+|.++..+++.+ |+.+++++|+.++++ ..+++++.+|+.+ + ++. . |
T Consensus 12 ~~~~~~~~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 12 EIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPMDP-IVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp HHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCCCC-CTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred HHHHHhCCCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECccccc-cCcEEEEEcccccchhhhhhhccCCCCcee
Confidence 445554423456799999999999999999995 778999999955433 3589999999988 4 564 3 9
Q ss_pred EEEeccccccCChhH---------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ---------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~---------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++...+|...+.. ...+|+++++.|+| ||++++.
T Consensus 91 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~~~ 135 (180)
T 1ej0_A 91 VVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVK 135 (180)
T ss_dssp EEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 999999988766541 15889999999999 9999987
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.11 E-value=5.3e-11 Score=106.17 Aligned_cols=91 Identities=15% Similarity=0.136 Sum_probs=75.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-C--ceEEeccCCc-CCCCC--CEEEeccccccCChhH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-C--VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQ 251 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-r--i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~ 251 (345)
...+|||||||+|.++..++++ ..+++++|+ +.+++.++ + -.++.+|+.+ +++++ |+|++..+++|+.++
T Consensus 54 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~~~~~~~- 130 (260)
T 2avn_A 54 NPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN- 130 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC-
T ss_pred CCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhcCCCEEECcHHHCCCCCCCEEEEEEcchhhhcccc-
Confidence 5579999999999999999987 468999999 88888777 2 2488899887 66644 999999877776443
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 252 CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 252 ~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...+|+++++.|+| ||++++.
T Consensus 131 ~~~~l~~~~~~Lkp---gG~l~~~ 151 (260)
T 2avn_A 131 KDKAFSEIRRVLVP---DGLLIAT 151 (260)
T ss_dssp HHHHHHHHHHHEEE---EEEEEEE
T ss_pred HHHHHHHHHHHcCC---CeEEEEE
Confidence 57899999999999 9999887
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=99.77 Aligned_cols=95 Identities=7% Similarity=-0.036 Sum_probs=75.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------C-CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------S-GQ 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~-~D 236 (345)
.....+|||||||+|..+..+++++| +.+++++|+ +.+++.++ +++++.+|+.+.++ . -|
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD 135 (223)
T 3duw_A 56 IQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFD 135 (223)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCS
T ss_pred hhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcC
Confidence 44567999999999999999999998 789999999 77777654 59999999876322 2 29
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+|++... .+....+|+++.+.|+| ||.+++. +...
T Consensus 136 ~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 170 (223)
T 3duw_A 136 FIFIDAD-----KQNNPAYFEWALKLSRP---GTVIIGD-NVVR 170 (223)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTCCT---TCEEEEE-SCSG
T ss_pred EEEEcCC-----cHHHHHHHHHHHHhcCC---CcEEEEe-CCCc
Confidence 9987654 33446889999999999 9977776 6544
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.7e-10 Score=98.56 Aligned_cols=127 Identities=10% Similarity=0.055 Sum_probs=99.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-C--CCEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-S--GQAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~--~D~i~~~~vl 244 (345)
+..+|+|||||+|.++..+++..|..+++++|+ |..++.|+ +|++..+|.++.++ . .|+|++.++.
T Consensus 21 ~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~IviagmG 100 (244)
T 3gnl_A 21 KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMG 100 (244)
T ss_dssp SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEEEC
T ss_pred CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEeCCc
Confidence 457999999999999999999999889999999 77777666 69999999999554 2 3999886554
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
.+....||....+.|++ ++++++. -. . ....++++|.+.||
T Consensus 101 ----g~lI~~IL~~~~~~L~~---~~~lIlq-~~-------------------------~------~~~~lr~~L~~~Gf 141 (244)
T 3gnl_A 101 ----GTLIRTILEEGAAKLAG---VTKLILQ-PN-------------------------I------AAWQLREWSEQNNW 141 (244)
T ss_dssp ----HHHHHHHHHHTGGGGTT---CCEEEEE-ES-------------------------S------CHHHHHHHHHHHTE
T ss_pred ----hHHHHHHHHHHHHHhCC---CCEEEEE-cC-------------------------C------ChHHHHHHHHHCCC
Confidence 34567899999999999 8888888 10 0 15668999999999
Q ss_pred CceEEEec---CCceEEEEEEcC
Q 044482 325 GTIKVICR---SYCYWVIEFYKP 344 (345)
Q Consensus 325 ~~~~~~~~---~~~~~vi~~~k~ 344 (345)
.+++..-+ .-.+.+|.+.+.
T Consensus 142 ~i~~E~lv~e~~k~Yeii~~~~~ 164 (244)
T 3gnl_A 142 LITSEAILREDNKVYEIMVLAPS 164 (244)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEECCEEEEEEEEEeC
Confidence 98765433 235677777653
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.1e-11 Score=103.07 Aligned_cols=130 Identities=12% Similarity=-0.001 Sum_probs=99.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-C-CCEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-S-GQAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~-~D~i~~~~vlh~ 246 (345)
....+|||||||.|-++..++..+|..+++++|+ +.+++.++ +.++...|+....| . +|++++.-++|+
T Consensus 131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~p~~~~DvaL~lkti~~ 210 (281)
T 3lcv_B 131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDRLDEPADVTLLLKTLPC 210 (281)
T ss_dssp CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSCCCSCCSEEEETTCHHH
T ss_pred CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccCCCCCcchHHHHHHHHH
Confidence 3467999999999999999999999999999999 78888766 67889999998545 3 399999999999
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEEecc--CCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLRSKR--GLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~--~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
+.+++....+ ++.++|+| +|.++.. +. +...+ -.|-... .++|++.+.+.|.
T Consensus 211 Le~q~kg~g~-~ll~aL~~---~~vvVSf-p~ksl~Grs--------------~gm~~~Y-------~~~~e~~~~~~g~ 264 (281)
T 3lcv_B 211 LETQQRGSGW-EVIDIVNS---PNIVVTF-PTKSLGQRS--------------KGMFQNY-------SQSFESQARERSC 264 (281)
T ss_dssp HHHHSTTHHH-HHHHHSSC---SEEEEEE-ECC---------------------CHHHHH-------HHHHHHHHHHHTC
T ss_pred hhhhhhHHHH-HHHHHhCC---CCEEEec-cchhhcCCC--------------cchhhHH-------HHHHHHHHHhcCC
Confidence 9988776777 89999999 7766666 33 11111 1121222 6789999999998
Q ss_pred CceEEEecCC
Q 044482 325 GTIKVICRSY 334 (345)
Q Consensus 325 ~~~~~~~~~~ 334 (345)
. ++...+++
T Consensus 265 ~-~~~~~~~n 273 (281)
T 3lcv_B 265 R-IQRLEIGN 273 (281)
T ss_dssp C-EEEEEETT
T ss_pred c-eeeeeecC
Confidence 4 44444543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-10 Score=104.29 Aligned_cols=97 Identities=19% Similarity=0.215 Sum_probs=79.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~- 234 (345)
..++..++ .....+|||+|||+|.++..++++ .|..+++++|. +.+++.++ +++++.+|+.+.+++
T Consensus 102 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~ 180 (277)
T 1o54_A 102 SFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEK 180 (277)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCC
T ss_pred HHHHHHhC-CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCC
Confidence 35566666 677789999999999999999999 78899999998 77776554 688999999886664
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++ +.++. ..+|+++.+.|+| ||++++.
T Consensus 181 ~~D~V~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~ 212 (277)
T 1o54_A 181 DVDALFL-----DVPDP--WNYIDKCWEALKG---GGRFATV 212 (277)
T ss_dssp SEEEEEE-----CCSCG--GGTHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEE
Confidence 3 99987 34444 3789999999999 9999988
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-10 Score=99.43 Aligned_cols=94 Identities=12% Similarity=0.127 Sum_probs=77.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S-G 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~-~ 235 (345)
..+++.++ .....+|||||||+|.++..+++. ..+++++|+ +.+++.++ +++++.+|+.+..+ . .
T Consensus 67 ~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 143 (210)
T 3lbf_A 67 ARMTELLE-LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAP 143 (210)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCC
Confidence 34556666 667789999999999999999998 578999999 77777665 58999999988443 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++++ ++++.|+| ||++++.
T Consensus 144 ~D~i~~~~~~~~~~~--------~~~~~L~p---gG~lv~~ 173 (210)
T 3lbf_A 144 FDAIIVTAAPPEIPT--------ALMTQLDE---GGILVLP 173 (210)
T ss_dssp EEEEEESSBCSSCCT--------HHHHTEEE---EEEEEEE
T ss_pred ccEEEEccchhhhhH--------HHHHhccc---CcEEEEE
Confidence 99999999999886 46789999 9999888
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.09 E-value=3e-10 Score=96.90 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=78.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCC--CCeEEEeehhhHhhhCCCceEEeccCCc-C--------------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYP--QITGINFDLPYVIKNAPCVEHVEGDMFV-N-------------- 231 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p--~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~-------------- 231 (345)
.+.+.+..+....+|||||||+|.++..+++++| +.+++++|+.++.. ..+++++.+|+.+ +
T Consensus 12 ~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~~-~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 12 ELDNKYLFLKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMDP-IPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp HHHHHHCCCCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCCC-CTTCEEEECCTTTTSSCCC----------
T ss_pred HHHHHcCCCCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccCC-CCCceEEEccccchhhhhhcccccccccc
Confidence 4555555245667999999999999999999998 68999999955421 2379999999987 4
Q ss_pred -----------CCC-C-CEEEeccccccCC----hhH-----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 -----------VPS-G-QAIFTKSVLLNWS----DEQ-----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 -----------~p~-~-D~i~~~~vlh~~~----d~~-----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++. . |+|++...+|... +.. ...+|+++++.|+| ||++++.
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 153 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINI---GGTYIVK 153 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 353 3 9999988776532 221 13489999999999 9998876
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.7e-10 Score=101.92 Aligned_cols=96 Identities=14% Similarity=0.117 Sum_probs=76.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC--------CCC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV--------PSG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~--------p~~-D 236 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ |.+++.|+ +++++.+|+.+.+ +.. |
T Consensus 59 ~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD 138 (242)
T 3r3h_A 59 TRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFD 138 (242)
T ss_dssp HTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEE
T ss_pred cCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEe
Confidence 3557999999999999999999986 789999999 77777665 7999999997622 223 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
+|++... .+.....|+++.+.|+| ||.|++. +.....
T Consensus 139 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d-~~~~~g 175 (242)
T 3r3h_A 139 FIFIDAD-----KTNYLNYYELALKLVTP---KGLIAID-NIFWDG 175 (242)
T ss_dssp EEEEESC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSSSS
T ss_pred EEEEcCC-----hHHhHHHHHHHHHhcCC---CeEEEEE-CCccCC
Confidence 9988643 33446789999999999 9988887 766543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6.3e-10 Score=94.20 Aligned_cols=95 Identities=7% Similarity=-0.110 Sum_probs=76.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CC-CC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VP-SG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p-~~-D~i~~~~v 243 (345)
...+|||+|||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+.+. ++ .. |+|++...
T Consensus 44 ~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 44 TGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp TTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 4578999999999999988774 5568999999 88888766 589999999872 33 23 99999888
Q ss_pred cccCChhHHHHHHHHHHh--hCCCCCCCcEEEEEeccC
Q 044482 244 LLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~~d~~ 279 (345)
+|+. .++..++++++.+ .|+| ||.+++. ...
T Consensus 123 ~~~~-~~~~~~~l~~~~~~~~L~p---gG~l~~~-~~~ 155 (189)
T 3p9n_A 123 YNVD-SADVDAILAALGTNGWTRE---GTVAVVE-RAT 155 (189)
T ss_dssp TTSC-HHHHHHHHHHHHHSSSCCT---TCEEEEE-EET
T ss_pred CCcc-hhhHHHHHHHHHhcCccCC---CeEEEEE-ecC
Confidence 6643 4556789999999 9999 9999888 443
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.7e-10 Score=102.35 Aligned_cols=123 Identities=11% Similarity=0.092 Sum_probs=94.1
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
..+++.++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.++ ++++..+|+.+ ++++
T Consensus 86 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~ 164 (258)
T 2pwy_A 86 SAMVTLLD-LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEE 164 (258)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCT
T ss_pred HHHHHHcC-CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCC
Confidence 45666666 777789999999999999999999 78899999998 77765443 58899999988 4764
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCH
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~ 312 (345)
+ |+|++ ++++. ..+|+++++.|+| ||++++. ..... ..
T Consensus 165 ~~~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~-~~~~~-----------------------------~~ 204 (258)
T 2pwy_A 165 AAYDGVAL-----DLMEP--WKVLEKAALALKP---DRFLVAY-LPNIT-----------------------------QV 204 (258)
T ss_dssp TCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEE-ESCHH-----------------------------HH
T ss_pred CCcCEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEE-eCCHH-----------------------------HH
Confidence 3 99987 34444 3789999999999 9999998 42100 12
Q ss_pred HHHHHHHHHCCCCceEEEe
Q 044482 313 GEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 313 ~e~~~ll~~aGf~~~~~~~ 331 (345)
.++.+.++++||+.+++..
T Consensus 205 ~~~~~~l~~~gf~~~~~~~ 223 (258)
T 2pwy_A 205 LELVRAAEAHPFRLERVLE 223 (258)
T ss_dssp HHHHHHHTTTTEEEEEEEE
T ss_pred HHHHHHHHHCCCceEEEEE
Confidence 4556777888998766544
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.6e-11 Score=102.81 Aligned_cols=96 Identities=15% Similarity=0.208 Sum_probs=77.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC---CC--CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP---SG--QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p---~~--D~i~~ 240 (345)
..+..+|||||||+|..+..+++.+|..+++++|+ +.+++.|+ +++++.+|+.+.++ .+ |+|++
T Consensus 69 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~ 148 (232)
T 3ntv_A 69 MNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFI 148 (232)
T ss_dssp HHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEE
T ss_pred hcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEE
Confidence 44568999999999999999999889999999999 78777665 68999999987433 33 99986
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
... .+....+|+++++.|+| ||.|++. +.+..
T Consensus 149 ~~~-----~~~~~~~l~~~~~~Lkp---gG~lv~d-~~~~~ 180 (232)
T 3ntv_A 149 DAA-----KAQSKKFFEIYTPLLKH---QGLVITD-NVLYH 180 (232)
T ss_dssp ETT-----SSSHHHHHHHHGGGEEE---EEEEEEE-CTTGG
T ss_pred cCc-----HHHHHHHHHHHHHhcCC---CeEEEEe-eCCcC
Confidence 633 23346789999999999 9988776 55443
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=99.28 Aligned_cols=95 Identities=14% Similarity=0.163 Sum_probs=78.6
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~-~ 235 (345)
.+++.+. .....+|||||||+|.++..+++.. |+.+++++|. +.+++.++ +++++.+|+..+++ . .
T Consensus 68 ~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~ 146 (215)
T 2yxe_A 68 MMCELLD-LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAP 146 (215)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCC
T ss_pred HHHHhhC-CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCC
Confidence 4555555 5667899999999999999999987 6689999998 77777665 58899999876555 3 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++|++++ ++++.|+| ||++++.
T Consensus 147 fD~v~~~~~~~~~~~--------~~~~~L~p---gG~lv~~ 176 (215)
T 2yxe_A 147 YDRIYTTAAGPKIPE--------PLIRQLKD---GGKLLMP 176 (215)
T ss_dssp EEEEEESSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred eeEEEECCchHHHHH--------HHHHHcCC---CcEEEEE
Confidence 99999999999873 67889999 9999888
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-10 Score=99.13 Aligned_cols=90 Identities=13% Similarity=0.110 Sum_probs=74.4
Q ss_pred ccceEEecCCccHHHHHHHHH----CCCCeEEEeeh-hhHhhhCC----CceEEeccCCcC--CC---C-C-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNT----YPQITGINFDL-PYVIKNAP----CVEHVEGDMFVN--VP---S-G-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~----~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~--~p---~-~-D~i~~~~v 243 (345)
..+|||||||+|..+..+++. +|+.+++++|+ |.+++.|+ +++++.+|+.+. ++ . . |+|++...
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~~~~v~~~~gD~~~~~~l~~~~~~~fD~I~~d~~ 161 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 161 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhccCCceEEEECcchhHHHHHhhccCCCCEEEECCc
Confidence 469999999999999999998 78899999999 88888775 799999999873 22 3 2 99988655
Q ss_pred cccCChhHHHHHHHHHHh-hCCCCCCCcEEEEEecc
Q 044482 244 LLNWSDEQCLKILKNCYD-ALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~-aL~p~~~gG~lli~~d~ 278 (345)
|. +...+|+++++ .|+| ||++++. +.
T Consensus 162 -~~----~~~~~l~~~~r~~Lkp---GG~lv~~-d~ 188 (236)
T 2bm8_A 162 -HA----NTFNIMKWAVDHLLEE---GDYFIIE-DM 188 (236)
T ss_dssp -CS----SHHHHHHHHHHHTCCT---TCEEEEC-SC
T ss_pred -hH----hHHHHHHHHHHhhCCC---CCEEEEE-eC
Confidence 42 33578999997 9999 9999988 64
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.3e-10 Score=100.28 Aligned_cols=96 Identities=10% Similarity=0.115 Sum_probs=77.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-----CC-CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-----SG-QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-----~~-D~i~ 239 (345)
.....+|||||||+|..+..+++.+|+.+++++|. +.+++.++ +++++.+|+.+..+ .. |+|+
T Consensus 52 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~ 131 (233)
T 2gpy_A 52 MAAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLF 131 (233)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEE
T ss_pred ccCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEE
Confidence 34557999999999999999999999999999999 77777654 58999999987322 23 9999
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+....+ ....+|+++.+.|+| ||++++. +....
T Consensus 132 ~~~~~~-----~~~~~l~~~~~~L~p---gG~lv~~-~~~~~ 164 (233)
T 2gpy_A 132 IDAAKG-----QYRRFFDMYSPMVRP---GGLILSD-NVLFR 164 (233)
T ss_dssp EEGGGS-----CHHHHHHHHGGGEEE---EEEEEEE-TTTC-
T ss_pred ECCCHH-----HHHHHHHHHHHHcCC---CeEEEEE-cCCcC
Confidence 987764 335789999999999 9998887 65543
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.07 E-value=1.3e-10 Score=101.17 Aligned_cols=96 Identities=9% Similarity=0.071 Sum_probs=76.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCc---CCC-----CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFV---NVP-----SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~---~~p-----~~- 235 (345)
..+..+|||||||+|..+..+++..| +.+++++|+ |.+++.|+ +++++.+|+.+ .++ ..
T Consensus 56 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~f 135 (221)
T 3u81_A 56 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 135 (221)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCC
T ss_pred hcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCce
Confidence 34567999999999999999999865 789999999 88887665 59999999855 222 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++....|++.+. .++++.+ +.|+| ||.|++. +..
T Consensus 136 D~V~~d~~~~~~~~~--~~~~~~~-~~Lkp---gG~lv~~-~~~ 172 (221)
T 3u81_A 136 DMVFLDHWKDRYLPD--TLLLEKC-GLLRK---GTVLLAD-NVI 172 (221)
T ss_dssp SEEEECSCGGGHHHH--HHHHHHT-TCCCT---TCEEEES-CCC
T ss_pred EEEEEcCCcccchHH--HHHHHhc-cccCC---CeEEEEe-CCC
Confidence 999999888776443 4678888 99999 9988777 554
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.07 E-value=1.4e-10 Score=102.09 Aligned_cols=94 Identities=10% Similarity=0.101 Sum_probs=70.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-------------C--CceEEeccCCc--C--CCCC--C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-------------P--CVEHVEGDMFV--N--VPSG--Q 236 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-------------~--ri~~~~gd~~~--~--~p~~--D 236 (345)
...+|||||||+|.++..+++.+|+..++++|+ +.+++.| . +++++.+|+.+ + ++++ |
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D 125 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT 125 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence 456899999999999999999999999999999 7776532 1 79999999986 2 4544 8
Q ss_pred EEEeccccccCChhH------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDEQ------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.|++.....++.... ...+|+++++.|+| ||.|++.
T Consensus 126 ~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp---GG~l~~~ 167 (235)
T 3ckk_A 126 KMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV---GGLVYTI 167 (235)
T ss_dssp EEEEESCC-----------CCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC---CCEEEEE
Confidence 887643322111000 03689999999999 9999887
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.05 E-value=4.2e-10 Score=101.58 Aligned_cols=145 Identities=13% Similarity=0.104 Sum_probs=93.2
Q ss_pred HHHHhccCcc-cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEe-ccCCc----CCCC--C
Q 044482 169 KILEIYKGFK-ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVE-GDMFV----NVPS--G 235 (345)
Q Consensus 169 ~i~~~~~~~~-~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~-gd~~~----~~p~--~ 235 (345)
.+++.+. .. ...+|||||||+|.++..+++. +..+++++|+ +.|++.+. |+.... .|+.. .+|. -
T Consensus 75 ~~l~~~~-~~~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~~~rv~~~~~~ni~~l~~~~l~~~~f 152 (291)
T 3hp7_A 75 KALAVFN-LSVEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQDDRVRSMEQYNFRYAEPVDFTEGLP 152 (291)
T ss_dssp HHHHHTT-CCCTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHTCTTEEEECSCCGGGCCGGGCTTCCC
T ss_pred HHHHhcC-CCccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHhCcccceecccCceecchhhCCCCCC
Confidence 4556555 33 3468999999999999998886 4568999999 77876532 443332 34322 2443 3
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch-hhhhhhccchhhhhhcCCCccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS-INRNILTLDIVMYDLFPQAKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~rt~~e 314 (345)
|++++...+|++ ..+|+++++.|+| ||++++. - .|+-..... ........|-. ...++.++
T Consensus 153 D~v~~d~sf~sl-----~~vL~e~~rvLkp---GG~lv~l-v--kPqfe~~~~~~~~~G~vrd~~-------~~~~~~~~ 214 (291)
T 3hp7_A 153 SFASIDVSFISL-----NLILPALAKILVD---GGQVVAL-V--KPQFEAGREQIGKNGIVRESS-------IHEKVLET 214 (291)
T ss_dssp SEEEECCSSSCG-----GGTHHHHHHHSCT---TCEEEEE-E--CGGGTSCGGGCC-CCCCCCHH-------HHHHHHHH
T ss_pred CEEEEEeeHhhH-----HHHHHHHHHHcCc---CCEEEEE-E--CcccccChhhcCCCCccCCHH-------HHHHHHHH
Confidence 999998888765 4689999999999 9999886 2 111100000 00000001100 01235788
Q ss_pred HHHHHHHCCCCceEEEecC
Q 044482 315 FKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~~~ 333 (345)
+.++++++||++..+...+
T Consensus 215 v~~~~~~~Gf~v~~~~~sp 233 (291)
T 3hp7_A 215 VTAFAVDYGFSVKGLDFSP 233 (291)
T ss_dssp HHHHHHHTTEEEEEEEECS
T ss_pred HHHHHHHCCCEEEEEEECC
Confidence 9999999999988876553
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.6e-10 Score=101.25 Aligned_cols=117 Identities=14% Similarity=0.050 Sum_probs=89.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-C-CEEEecccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS-G-QAIFTKSVL 244 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~-~-D~i~~~~vl 244 (345)
....+|||+|||+|.++..+++..+. +++++|+ |.+++.++ +++++.+|+++..+. . |+|++....
T Consensus 124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p~ 202 (278)
T 2frn_A 124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYVV 202 (278)
T ss_dssp CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCCS
T ss_pred CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCch
Confidence 34679999999999999999999877 8999999 78877665 488999999984433 3 999885331
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGF 324 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf 324 (345)
....+++++.+.|+| ||.+++. +...... ......+++.+.++++||
T Consensus 203 ------~~~~~l~~~~~~Lkp---gG~l~~~-~~~~~~~-----------------------~~~~~~~~i~~~~~~~G~ 249 (278)
T 2frn_A 203 ------RTHEFIPKALSIAKD---GAIIHYH-NTVPEKL-----------------------MPREPFETFKRITKEYGY 249 (278)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEE-EEEEGGG-----------------------TTTTTHHHHHHHHHHTTC
T ss_pred ------hHHHHHHHHHHHCCC---CeEEEEE-Eeecccc-----------------------ccccHHHHHHHHHHHcCC
Confidence 124689999999999 9999998 5421100 011246778999999999
Q ss_pred CceE
Q 044482 325 GTIK 328 (345)
Q Consensus 325 ~~~~ 328 (345)
+...
T Consensus 250 ~~~~ 253 (278)
T 2frn_A 250 DVEK 253 (278)
T ss_dssp EEEE
T ss_pred eeEE
Confidence 8765
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.6e-10 Score=100.17 Aligned_cols=96 Identities=19% Similarity=0.218 Sum_probs=79.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~ 235 (345)
...+++.++ .....+|||||||+|.++..+++..| .+++++|. +.+++.++ +++++.+|+..+++. +
T Consensus 80 ~~~~~~~l~-~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (235)
T 1jg1_A 80 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA 157 (235)
T ss_dssp HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCC
Confidence 345556665 66778999999999999999999988 89999998 77777665 588999998556652 2
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..+++++.+ ++.+.|+| ||++++.
T Consensus 158 ~fD~Ii~~~~~~~~~~--------~~~~~L~p---gG~lvi~ 188 (235)
T 1jg1_A 158 PYDVIIVTAGAPKIPE--------PLIEQLKI---GGKLIIP 188 (235)
T ss_dssp CEEEEEECSBBSSCCH--------HHHHTEEE---EEEEEEE
T ss_pred CccEEEECCcHHHHHH--------HHHHhcCC---CcEEEEE
Confidence 99999999998875 56789999 9999888
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=5e-10 Score=103.96 Aligned_cols=101 Identities=14% Similarity=0.092 Sum_probs=76.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPS-G 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~-~ 235 (345)
..+.+... .....+|||||||+|.++..++++ +..+++++|..++++.|+ +++++.+|+.+ ++|. .
T Consensus 54 ~~i~~~~~-~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~ 131 (340)
T 2fyt_A 54 DFIYQNPH-IFKDKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEK 131 (340)
T ss_dssp HHHHHCGG-GTTTCEEEEETCTTSHHHHHHHHT-TCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSC
T ss_pred HHHHhhhh-hcCCCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHHHHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCc
Confidence 34445544 556689999999999999999887 456899999955776554 68999999988 6763 3
Q ss_pred -CEEEeccccccCC-hhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 236 -QAIFTKSVLLNWS-DEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 236 -D~i~~~~vlh~~~-d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
|+|++..+.+.+. ......+|+++++.|+| ||+++
T Consensus 132 ~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~Lkp---gG~li 168 (340)
T 2fyt_A 132 VDVIISEWMGYFLLFESMLDSVLYAKNKYLAK---GGSVY 168 (340)
T ss_dssp EEEEEECCCBTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred EEEEEEcCchhhccCHHHHHHHHHHHHhhcCC---CcEEE
Confidence 9999877433222 23446799999999999 99887
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.04 E-value=6.6e-10 Score=98.47 Aligned_cols=95 Identities=11% Similarity=0.067 Sum_probs=76.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CCC--C-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VPS--G-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p~--~-D~i 238 (345)
..+..+|||||||+|..+..+++.+| +.+++++|+ +.+++.++ +++++.+|+.+. ++. . |+|
T Consensus 61 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V 140 (248)
T 3tfw_A 61 LTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLI 140 (248)
T ss_dssp HHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEE
T ss_pred hcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEE
Confidence 44568999999999999999999998 789999999 77777655 689999998762 222 3 999
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
++.. +.......|+++++.|+| ||.|++. +...
T Consensus 141 ~~d~-----~~~~~~~~l~~~~~~Lkp---GG~lv~~-~~~~ 173 (248)
T 3tfw_A 141 FIDA-----DKPNNPHYLRWALRYSRP---GTLIIGD-NVVR 173 (248)
T ss_dssp EECS-----CGGGHHHHHHHHHHTCCT---TCEEEEE-CCSG
T ss_pred EECC-----chHHHHHHHHHHHHhcCC---CeEEEEe-CCCc
Confidence 8854 334456789999999999 9988777 6543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=106.37 Aligned_cols=94 Identities=15% Similarity=0.085 Sum_probs=75.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
.....+|||||||+|.++..++++ +..+++++|+.++++.|+ +++++.+|+.+ ++|.+ |+|++..+
T Consensus 64 ~~~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 64 LFKDKVVLDVGSGTGILCMFAAKA-GARKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWM 142 (349)
T ss_dssp HHTTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECSTHHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCC
T ss_pred cCCCCEEEEEeccchHHHHHHHHC-CCCEEEEECcHHHHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEccc
Confidence 345579999999999999999987 667999999966777665 49999999998 77743 99999776
Q ss_pred cccCC-hhHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 244 LLNWS-DEQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 244 lh~~~-d~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.+.+. .+....+|+++.+.|+| ||.++.
T Consensus 143 ~~~l~~~~~~~~~l~~~~r~Lkp---gG~li~ 171 (349)
T 3q7e_A 143 GYCLFYESMLNTVLHARDKWLAP---DGLIFP 171 (349)
T ss_dssp BBTBTBTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred cccccCchhHHHHHHHHHHhCCC---CCEEcc
Confidence 55442 23345789999999999 998763
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.03 E-value=3e-10 Score=101.43 Aligned_cols=96 Identities=10% Similarity=0.125 Sum_probs=74.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC--------CCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN--------VPS 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~--------~p~ 234 (345)
.....+|||+|||+|.++..+++++|..+++++|+ +.+++.++ |++++.+|+.+. ++.
T Consensus 34 ~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~ 113 (260)
T 2ozv_A 34 DDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPD 113 (260)
T ss_dssp CCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred ccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence 45567999999999999999999999999999999 77766543 488999999874 333
Q ss_pred -C-CEEEeccccc----------------cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 -G-QAIFTKSVLL----------------NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 -~-D~i~~~~vlh----------------~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|+++-.++ +........+++.+.+.|+| ||+++++
T Consensus 114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 169 (260)
T 2ozv_A 114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVS---GGQLSLI 169 (260)
T ss_dssp TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCC---CCEEEEE
Confidence 3 9999973322 22223356889999999999 9999887
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-10 Score=100.76 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=75.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--------CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--------SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--------~~-D 236 (345)
....+|||||||+|..+..+++.+| +.+++++|+ +.+++.++ +++++.+|+.+..+ .. |
T Consensus 63 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD 142 (225)
T 3tr6_A 63 MQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYD 142 (225)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEE
T ss_pred hCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCcc
Confidence 3557999999999999999999988 789999999 77777655 59999999876322 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
+|++... .+....+++++++.|+| ||.|++. +...+
T Consensus 143 ~v~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~~ 178 (225)
T 3tr6_A 143 LIYIDAD-----KANTDLYYEESLKLLRE---GGLIAVD-NVLRR 178 (225)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSGG
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCC---CcEEEEe-CCCcC
Confidence 9986542 34456789999999999 9988887 66543
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=8.7e-10 Score=99.75 Aligned_cols=92 Identities=13% Similarity=0.107 Sum_probs=73.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-CC---CEEEec--
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-SG---QAIFTK-- 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~~---D~i~~~-- 241 (345)
...+|||||||+|.++..+++. |+.+++++|+ +.+++.|+ |++++.+|++++++ .. |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~~~~f~~~D~IvsnPP 201 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPP 201 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCC
T ss_pred CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhcccccCCCCEEEEcCC
Confidence 4468999999999999999999 9999999999 88887665 49999999998554 45 999986
Q ss_pred ----------cccccCChh------HHHHHHHHHH-hhCCCCCCCcEEEEE
Q 044482 242 ----------SVLLNWSDE------QCLKILKNCY-DALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ----------~vlh~~~d~------~~~~iL~~~~-~aL~p~~~gG~lli~ 275 (345)
.+. +.+.. +...+++++. +.|+| ||.+++.
T Consensus 202 yi~~~~~l~~~v~-~ep~~al~~~~dgl~~~~~i~~~~l~p---gG~l~~e 248 (284)
T 1nv8_A 202 YVKSSAHLPKDVL-FEPPEALFGGEDGLDFYREFFGRYDTS---GKIVLME 248 (284)
T ss_dssp CBCGGGSCTTSCC-CSCHHHHBCTTTSCHHHHHHHHHCCCT---TCEEEEE
T ss_pred CCCcccccChhhc-cCcHHHhcCCCcHHHHHHHHHHhcCCC---CCEEEEE
Confidence 333 22221 1137899999 99999 9988865
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-10 Score=97.51 Aligned_cols=96 Identities=13% Similarity=0.150 Sum_probs=78.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCC-C-C-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVP-S-G-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p-~-~-D 236 (345)
..+++.+. .....+|||||||+|.++..+++.. .+++++|. +.+++.++ +++++.+|+.+..+ . . |
T Consensus 60 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~~fD 136 (231)
T 1vbf_A 60 IFMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYD 136 (231)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEE
T ss_pred HHHHHhcC-CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCcccccccCCCcc
Confidence 34555555 6667899999999999999999986 68999998 78877665 58899999987444 2 3 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+|++..++|++.+ ++++.|+| ||++++. ..
T Consensus 137 ~v~~~~~~~~~~~--------~~~~~L~p---gG~l~~~-~~ 166 (231)
T 1vbf_A 137 RVVVWATAPTLLC--------KPYEQLKE---GGIMILP-IG 166 (231)
T ss_dssp EEEESSBBSSCCH--------HHHHTEEE---EEEEEEE-EC
T ss_pred EEEECCcHHHHHH--------HHHHHcCC---CcEEEEE-Ec
Confidence 9999999999874 47789999 9999888 43
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.9e-10 Score=103.84 Aligned_cols=92 Identities=11% Similarity=0.155 Sum_probs=74.9
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCC-C-CEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPS-G-QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~-~-D~i~~~~vlh 245 (345)
.+|||||||+|.++..+++++|+.+++++|+ |.|++.++ |++++.+|..+ ..+. . |+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 4899999999999999999999999999999 88888765 79999999876 2343 3 9999865544
Q ss_pred cCChhHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....... ..+++++++.|+| ||.+++.
T Consensus 171 ~~~~~~L~t~efl~~~~r~Lkp---gGvlv~~ 199 (317)
T 3gjy_A 171 AITPQNFTTVEFFEHCHRGLAP---GGLYVAN 199 (317)
T ss_dssp SCCCGGGSBHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 3322221 5789999999999 9988877
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=2.4e-10 Score=106.85 Aligned_cols=94 Identities=6% Similarity=0.060 Sum_probs=73.9
Q ss_pred cccceEEecCC------ccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCCCceEEeccCCc-CCC-------CC-CEEEec
Q 044482 179 ELKKLVDVASC------LGANMSLIVNT-YPQITGINFDL-PYVIKNAPCVEHVEGDMFV-NVP-------SG-QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG------~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~-~~p-------~~-D~i~~~ 241 (345)
...+||||||| +|..+..++++ +|+.+++++|+ +.+.....+++|+.+|+.+ +++ .. |+|++.
T Consensus 216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~~~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisd 295 (419)
T 3sso_A 216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHVDELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDD 295 (419)
T ss_dssp SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGGCBTTEEEEECCTTCHHHHHHHHHHHCCEEEEEEC
T ss_pred CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhhcCCCcEEEEecccccchhhhhhcccCCccEEEEC
Confidence 34789999999 66667777765 69999999999 6665433399999999987 554 23 999876
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..|++. +..+.|+++++.||| ||.++|. |..
T Consensus 296 -gsH~~~--d~~~aL~el~rvLKP---GGvlVi~-Dl~ 326 (419)
T 3sso_A 296 -GSHINA--HVRTSFAALFPHVRP---GGLYVIE-DMW 326 (419)
T ss_dssp -SCCCHH--HHHHHHHHHGGGEEE---EEEEEEE-CGG
T ss_pred -Ccccch--hHHHHHHHHHHhcCC---CeEEEEE-ecc
Confidence 456654 346899999999999 9999998 765
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=98.99 E-value=3.1e-10 Score=100.44 Aligned_cols=90 Identities=13% Similarity=0.204 Sum_probs=70.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC---------------C--CceEEeccCCcC----CCCC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA---------------P--CVEHVEGDMFVN----VPSG 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a---------------~--ri~~~~gd~~~~----~p~~ 235 (345)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.+ . +++++.+|+++. ++.+
T Consensus 48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~ 127 (246)
T 2vdv_E 48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG 127 (246)
T ss_dssp SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence 3557899999999999999999999999999998 6666533 2 789999999873 3333
Q ss_pred --CEEEeccccccCChhHH-----------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQC-----------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~-----------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|.|++ +++++.. ..+|+++.+.|+| ||.|++.
T Consensus 128 ~~d~v~~-----~~p~p~~k~~~~~~r~~~~~~l~~~~~~Lkp---gG~l~~~ 172 (246)
T 2vdv_E 128 QLSKMFF-----CFPDPHFKQRKHKARIITNTLLSEYAYVLKE---GGVVYTI 172 (246)
T ss_dssp CEEEEEE-----ESCCCC------CSSCCCHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCEEEE-----ECCCcccccchhHHhhccHHHHHHHHHHcCC---CCEEEEE
Confidence 55553 2344321 3789999999999 9999887
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.6e-09 Score=94.33 Aligned_cols=91 Identities=14% Similarity=0.104 Sum_probs=72.3
Q ss_pred cceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC-----------CceEEeccCCcC---CCC-C-CEEEecc
Q 044482 181 KKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP-----------CVEHVEGDMFVN---VPS-G-QAIFTKS 242 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~---~p~-~-D~i~~~~ 242 (345)
.+|||||||+|..+..+++..| +.+++++|+ +.+++.|+ +++++.+|+.+. +++ . |+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 4899999999999999999875 789999999 77777654 589999998772 323 3 9998864
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. ......++++.+.|+| ||.|++. +...
T Consensus 138 ~~-----~~~~~~l~~~~~~Lkp---GG~lv~d-n~~~ 166 (221)
T 3dr5_A 138 SP-----MDLKALVDAAWPLLRR---GGALVLA-DALL 166 (221)
T ss_dssp CT-----TTHHHHHHHHHHHEEE---EEEEEET-TTTG
T ss_pred cH-----HHHHHHHHHHHHHcCC---CcEEEEe-CCCC
Confidence 32 3345689999999999 9887776 6554
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.7e-10 Score=105.04 Aligned_cols=92 Identities=10% Similarity=0.012 Sum_probs=78.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcC-CC-CC-CEEEecccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVN-VP-SG-QAIFTKSVLLN 246 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~-~p-~~-D~i~~~~vlh~ 246 (345)
...+|||+|||+|.++..++++ +.+++++|. +.+++.++ +++++.+|+.+. .+ .. |+|+++..+|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEALTEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTSCTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhccccCCCeEEEEECCchhh
Confidence 4468999999999999999987 468999998 77887766 588999999984 33 23 99999999987
Q ss_pred ---CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 ---WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ---~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...+....+++++++.|+| ||+++|+
T Consensus 311 ~~~~~~~~~~~~l~~~~~~Lkp---GG~l~iv 339 (381)
T 3dmg_A 311 GGAVILDVAQAFVNVAAARLRP---GGVFFLV 339 (381)
T ss_dssp TCSSCCHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cccccHHHHHHHHHHHHHhcCc---CcEEEEE
Confidence 4456678999999999999 9999988
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=98.98 E-value=6.9e-10 Score=102.03 Aligned_cols=96 Identities=16% Similarity=0.203 Sum_probs=78.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-C-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-S- 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~- 234 (345)
..+++.++ .....+|||||||+|.++..+++..+ +.+++++|+ +.+++.++ +++++.+|+.+..+ .
T Consensus 65 ~~l~~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~ 143 (317)
T 1dl5_A 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (317)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhcC-CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCC
Confidence 34556565 66678999999999999999999987 478999998 77777665 58999999987433 3
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++..++|++. +++.+.|+| ||++++.
T Consensus 144 ~fD~Iv~~~~~~~~~--------~~~~~~Lkp---gG~lvi~ 174 (317)
T 1dl5_A 144 PYDVIFVTVGVDEVP--------ETWFTQLKE---GGRVIVP 174 (317)
T ss_dssp CEEEEEECSBBSCCC--------HHHHHHEEE---EEEEEEE
T ss_pred CeEEEEEcCCHHHHH--------HHHHHhcCC---CcEEEEE
Confidence 3 9999999999987 457789999 9999887
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.97 E-value=5.5e-10 Score=93.94 Aligned_cols=92 Identities=11% Similarity=-0.060 Sum_probs=71.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC------CCC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV------PSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~------p~~-D~i 238 (345)
.....+|||+|||+|.++..+++ .+..+++++|+ +.+++.++ +++++.+|+.+.. +.. |+|
T Consensus 42 ~~~~~~vLD~GcG~G~~~~~~~~-~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i 120 (187)
T 2fhp_A 42 YFDGGMALDLYSGSGGLAIEAVS-RGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLV 120 (187)
T ss_dssp CCSSCEEEETTCTTCHHHHHHHH-TTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred hcCCCCEEEeCCccCHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEE
Confidence 34567999999999999999887 55679999999 88887665 5899999998722 233 999
Q ss_pred EeccccccCChhHHHHHHHHH--HhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQCLKILKNC--YDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~ 275 (345)
++...+|....+ .+++.+ .+.|+| ||.+++.
T Consensus 121 ~~~~~~~~~~~~---~~~~~l~~~~~L~~---gG~l~~~ 153 (187)
T 2fhp_A 121 LLDPPYAKQEIV---SQLEKMLERQLLTN---EAVIVCE 153 (187)
T ss_dssp EECCCGGGCCHH---HHHHHHHHTTCEEE---EEEEEEE
T ss_pred EECCCCCchhHH---HHHHHHHHhcccCC---CCEEEEE
Confidence 998886643333 345555 888999 9998887
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=98.96 E-value=9.5e-10 Score=101.60 Aligned_cols=94 Identities=15% Similarity=0.068 Sum_probs=73.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCC-CC-CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVP-SG-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p-~~-D~i~~~~v 243 (345)
.....+|||||||+|.++..++++ +..+++++|..++++.++ +++++.+|+.+ ++| .. |+|++..+
T Consensus 36 ~~~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 36 LFKDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWM 114 (328)
T ss_dssp HHTTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred hcCCCEEEEecCccHHHHHHHHHC-CCCEEEEEChHHHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCc
Confidence 345579999999999999998876 556899999966766554 58999999988 666 34 99999866
Q ss_pred cccCCh-hHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 244 LLNWSD-EQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 244 lh~~~d-~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.+.+.. +....+|+++++.|+| ||+++.
T Consensus 115 ~~~l~~~~~~~~~l~~~~~~Lkp---gG~li~ 143 (328)
T 1g6q_1 115 GYFLLYESMMDTVLYARDHYLVE---GGLIFP 143 (328)
T ss_dssp BTTBSTTCCHHHHHHHHHHHEEE---EEEEES
T ss_pred hhhcccHHHHHHHHHHHHhhcCC---CeEEEE
Confidence 554432 2345789999999999 998863
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=95.16 Aligned_cols=100 Identities=7% Similarity=0.020 Sum_probs=74.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC---CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV---PS 234 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~---p~ 234 (345)
.+++.+.......+|||+|||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+.+.. +.
T Consensus 21 ~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 99 (177)
T 2esr_A 21 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTG 99 (177)
T ss_dssp HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCS
T ss_pred HHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcC
Confidence 33444332345679999999999999999987 6679999999 78877665 5889999998732 23
Q ss_pred C-CEEEeccccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~ 275 (345)
. |+|++...+|. .....+++.+. +.|+| ||.+++.
T Consensus 100 ~fD~i~~~~~~~~---~~~~~~~~~l~~~~~L~~---gG~l~~~ 137 (177)
T 2esr_A 100 RFDLVFLDPPYAK---ETIVATIEALAAKNLLSE---QVMVVCE 137 (177)
T ss_dssp CEEEEEECCSSHH---HHHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred CCCEEEECCCCCc---chHHHHHHHHHhCCCcCC---CcEEEEE
Confidence 3 99999876542 22345666666 89999 9998887
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.6e-10 Score=95.32 Aligned_cols=94 Identities=14% Similarity=0.032 Sum_probs=74.7
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--CC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--SG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--~~-D~i~~~~v 243 (345)
+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++ +++++.+|..+..+ .+ |+|++...
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~ 135 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRDIDILFMDCD 135 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCSEEEEEEETT
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCCCCEEEEcCC
Confidence 457999999999999999999988 789999999 78877665 58999999876322 33 88877632
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
......+|+++++.|+| ||.+++. +....
T Consensus 136 -----~~~~~~~l~~~~~~Lkp---gG~lv~~-~~~~~ 164 (210)
T 3c3p_A 136 -----VFNGADVLERMNRCLAK---NALLIAV-NALRR 164 (210)
T ss_dssp -----TSCHHHHHHHHGGGEEE---EEEEEEE-SSSSC
T ss_pred -----hhhhHHHHHHHHHhcCC---CeEEEEE-Ccccc
Confidence 23346889999999999 9988876 65543
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-10 Score=98.44 Aligned_cols=89 Identities=16% Similarity=0.154 Sum_probs=74.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 249 (345)
....+|||||||+|.++..+++..|+.+++++|+ +.+++.++ ++.++.+|+.+ +++++ |+|++..+.
T Consensus 84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~~----- 158 (269)
T 1p91_A 84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP----- 158 (269)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCC-----
T ss_pred CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhCCCcEEEEcchhhCCCCCCceeEEEEeCCh-----
Confidence 3457899999999999999999998889999999 88888776 78999999887 66644 999987653
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..++++++.|+| ||++++. +..
T Consensus 159 ----~~l~~~~~~L~p---gG~l~~~-~~~ 180 (269)
T 1p91_A 159 ----CKAEELARVVKP---GGWVITA-TPG 180 (269)
T ss_dssp ----CCHHHHHHHEEE---EEEEEEE-EEC
T ss_pred ----hhHHHHHHhcCC---CcEEEEE-EcC
Confidence 248999999999 9999998 643
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.2e-09 Score=102.83 Aligned_cols=101 Identities=15% Similarity=0.063 Sum_probs=78.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~ 237 (345)
+.+... .....+|||||||+|.++..++++. ..+++++|...+++.++ +++++.+|+.+ ++|.. |+
T Consensus 55 i~~~~~-~~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~ 132 (376)
T 3r0q_C 55 VFQNKH-HFEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEATKMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDV 132 (376)
T ss_dssp HHTTTT-TTTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESSTTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEE
T ss_pred HHhccc-cCCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccHHHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceE
Confidence 334334 4566899999999999999999873 34899999977766655 58999999988 66644 99
Q ss_pred EEeccccccCChh-HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDE-QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~-~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++..+.|....+ ....+++++++.|+| ||.+++.
T Consensus 133 Iv~~~~~~~l~~e~~~~~~l~~~~~~Lkp---gG~li~~ 168 (376)
T 3r0q_C 133 IISEWMGYFLLRESMFDSVISARDRWLKP---TGVMYPS 168 (376)
T ss_dssp EEECCCBTTBTTTCTHHHHHHHHHHHEEE---EEEEESS
T ss_pred EEEcChhhcccchHHHHHHHHHHHhhCCC---CeEEEEe
Confidence 9997766665433 356789999999999 9988765
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.5e-10 Score=96.91 Aligned_cols=95 Identities=11% Similarity=0.116 Sum_probs=74.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-----CC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-----SG- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-----~~- 235 (345)
.....+|||||||+|..+..+++..| +.+++++|. +.+++.++ +++++.+|+.+. ++ ..
T Consensus 67 ~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~ 146 (229)
T 2avd_A 67 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 146 (229)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred hcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCc
Confidence 34557999999999999999999987 789999999 77776554 689999998762 21 23
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++... ......+++++.+.|+| ||.+++. +...
T Consensus 147 D~v~~d~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 182 (229)
T 2avd_A 147 DVAVVDAD-----KENCSAYYERCLQLLRP---GGILAVL-RVLW 182 (229)
T ss_dssp EEEEECSC-----STTHHHHHHHHHHHEEE---EEEEEEE-CCSG
T ss_pred cEEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEE-CCCc
Confidence 99988543 33446789999999999 9988887 6543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.92 E-value=3.2e-09 Score=99.07 Aligned_cols=105 Identities=16% Similarity=0.101 Sum_probs=82.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVP- 233 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p- 233 (345)
+..++.... +....+|||+|||+|.++..++... |+.+++++|+ |.+++.|+ +++++.+|+.+ +.+
T Consensus 192 a~~l~~~~~-~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~ 270 (354)
T 3tma_A 192 AQALLRLAD-ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFF 270 (354)
T ss_dssp HHHHHHHTT-CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTC
T ss_pred HHHHHHHhC-CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCcccc
Confidence 344555555 7778899999999999999999988 8899999999 88887766 58999999988 544
Q ss_pred CC-CEEEeccccccCCh--hH----HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG-QAIFTKSVLLNWSD--EQ----CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~-D~i~~~~vlh~~~d--~~----~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |+|+++-..+.... .+ ...+++++++.|+| ||++++.
T Consensus 271 ~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~Lkp---gG~l~i~ 316 (354)
T 3tma_A 271 PEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALALLPP---GGRVALL 316 (354)
T ss_dssp CCCSEEEECCCSCC----CHHHHHHHHHHHHHHHHTSCT---TCEEEEE
T ss_pred CCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 33 99999654432211 11 25789999999999 9999988
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.92 E-value=1.9e-10 Score=106.53 Aligned_cols=97 Identities=16% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------------------CceEEe
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------------------CVEHVE 225 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------------------ri~~~~ 225 (345)
..+++.++ .....+|||||||+|.++..+++. .|+.+++++|+ |.+++.|+ +++++.
T Consensus 95 ~~~l~~l~-~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~ 173 (336)
T 2b25_A 95 NMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH 173 (336)
T ss_dssp HHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred HHHHHhcC-CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence 34555555 667789999999999999999998 58789999999 77665543 588999
Q ss_pred ccCCcC---CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 226 GDMFVN---VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 226 gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+.+. ++.+ |+|++.. ++. ..+++++++.|+| ||++++.
T Consensus 174 ~d~~~~~~~~~~~~fD~V~~~~-----~~~--~~~l~~~~~~Lkp---gG~lv~~ 218 (336)
T 2b25_A 174 KDISGATEDIKSLTFDAVALDM-----LNP--HVTLPVFYPHLKH---GGVCAVY 218 (336)
T ss_dssp SCTTCCC-------EEEEEECS-----SST--TTTHHHHGGGEEE---EEEEEEE
T ss_pred CChHHcccccCCCCeeEEEECC-----CCH--HHHHHHHHHhcCC---CcEEEEE
Confidence 999873 3433 9998743 222 1379999999999 9999988
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=96.41 Aligned_cols=95 Identities=12% Similarity=0.063 Sum_probs=75.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-----------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP----------- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p----------- 233 (345)
.....+|||||||+|..+..+++..| ..+++++|. +.+++.++ +++++.+|+.+..+
T Consensus 58 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~ 137 (239)
T 2hnk_A 58 ISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSW 137 (239)
T ss_dssp HHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGG
T ss_pred hhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccc
Confidence 34567999999999999999999988 689999999 77777655 48999999865211
Q ss_pred --------CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 --------SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 --------~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. |+|++... .+....+|+++++.|+| ||++++. +...
T Consensus 138 ~~~f~~~~~~fD~I~~~~~-----~~~~~~~l~~~~~~L~p---gG~lv~~-~~~~ 184 (239)
T 2hnk_A 138 ASDFAFGPSSIDLFFLDAD-----KENYPNYYPLILKLLKP---GGLLIAD-NVLW 184 (239)
T ss_dssp GTTTCCSTTCEEEEEECSC-----GGGHHHHHHHHHHHEEE---EEEEEEE-CSSG
T ss_pred cccccCCCCCcCEEEEeCC-----HHHHHHHHHHHHHHcCC---CeEEEEE-cccc
Confidence 23 99988744 33446789999999999 9998887 6544
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.91 E-value=6.3e-10 Score=92.08 Aligned_cols=88 Identities=11% Similarity=0.029 Sum_probs=69.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC------CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP------SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p------~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..++++.++ ++++|+ +.+++.++ +++++.+|+.+..+ .. |+|++..
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~ 118 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAP 118 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECC
Confidence 4578999999999999999998776 999999 88887766 58999999876322 13 9999998
Q ss_pred ccccCChhHHHHHHHHHH--hhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQCLKILKNCY--DALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~--~aL~p~~~gG~lli~ 275 (345)
.+| -..+ .+++.+. +.|+| ||.+++.
T Consensus 119 ~~~-~~~~---~~~~~~~~~~~L~~---gG~~~~~ 146 (171)
T 1ws6_A 119 PYA-MDLA---ALFGELLASGLVEA---GGLYVLQ 146 (171)
T ss_dssp CTT-SCTT---HHHHHHHHHTCEEE---EEEEEEE
T ss_pred CCc-hhHH---HHHHHHHhhcccCC---CcEEEEE
Confidence 876 2233 3444444 99999 9998887
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.90 E-value=2e-09 Score=98.85 Aligned_cols=102 Identities=12% Similarity=0.114 Sum_probs=77.0
Q ss_pred HhccCcccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC-CCC-CE
Q 044482 172 EIYKGFKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV-PSG-QA 237 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~-p~~-D~ 237 (345)
..++ .....+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+ +. +.. |+
T Consensus 112 ~~l~-~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~~~~fD~ 190 (315)
T 1ixk_A 112 VALD-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDK 190 (315)
T ss_dssp HHHC-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEE
T ss_pred HHhC-CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccccccCCE
Confidence 3344 55668999999999999999999975 489999999 77776654 67899999987 32 333 99
Q ss_pred EEec------ccccc-------CChhHH-------HHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 238 IFTK------SVLLN-------WSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 238 i~~~------~vlh~-------~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
|++. .+++. |+.++. .++|+++++.|+| ||++++. ..
T Consensus 191 Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~Lkp---GG~lv~s-tc 247 (315)
T 1ixk_A 191 ILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYS-TC 247 (315)
T ss_dssp EEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ES
T ss_pred EEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEE-eC
Confidence 9983 23332 333322 5899999999999 9999887 54
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=2.2e-09 Score=91.01 Aligned_cols=105 Identities=16% Similarity=0.165 Sum_probs=76.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC---------CeEEEeehhhHhhhCCCceEE-eccCCc-C------
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ---------ITGINFDLPYVIKNAPCVEHV-EGDMFV-N------ 231 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~---------~~~~~~Dlp~~i~~a~ri~~~-~gd~~~-~------ 231 (345)
.+.+.+..+....+|||||||+|.++..++++++. .+++++|+.++.. ..+++++ .+|+.+ +
T Consensus 12 ~l~~~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~-~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 12 EVNERHQILRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP-LEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp HHHHHHCCCCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC-CTTCEEECSCCTTSHHHHHHHH
T ss_pred HHHHhcCCCCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc-CCCCeEEEeccCCCHHHHHHHH
Confidence 34444543456689999999999999999999875 7999999955321 1278899 999876 2
Q ss_pred --CCC-C-CEEEecccccc---C-ChhH-----HHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 232 --VPS-G-QAIFTKSVLLN---W-SDEQ-----CLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 232 --~p~-~-D~i~~~~vlh~---~-~d~~-----~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
++. . |+|++...+|. + .+.. ...+|+++++.|+| ||++++. ..
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~-~~ 146 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQP---GGTFLCK-TW 146 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-EC
T ss_pred HhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcC---CCEEEEE-ec
Confidence 232 3 99998654432 1 2221 14789999999999 9999888 54
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=1.7e-09 Score=95.88 Aligned_cols=94 Identities=13% Similarity=0.116 Sum_probs=74.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---C------CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---V------PSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~------p~~- 235 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ +.+++.++ +++++.+|..+. + +..
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 3457999999999999999999988 789999999 77777654 689999998762 2 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++... ......+++++.+.|+| ||.|++. +.+.
T Consensus 158 D~V~~d~~-----~~~~~~~l~~~~~~Lkp---GG~lv~d-~~~~ 193 (247)
T 1sui_A 158 DFIFVDAD-----KDNYLNYHKRLIDLVKV---GGVIGYD-NTLW 193 (247)
T ss_dssp SEEEECSC-----STTHHHHHHHHHHHBCT---TCCEEEE-CTTG
T ss_pred EEEEEcCc-----hHHHHHHHHHHHHhCCC---CeEEEEe-cCCc
Confidence 99998643 23346889999999999 9988776 5543
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4e-09 Score=91.82 Aligned_cols=92 Identities=10% Similarity=-0.026 Sum_probs=76.2
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEeccccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTKSVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~~vlh 245 (345)
+..+.+|||||||.|-++..+. |..+++++|+ +.+++.++ +.++..+|+.. +.|.. |++++.-++|
T Consensus 103 ~~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~~~~~~DvvLllk~lh 179 (253)
T 3frh_A 103 AETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAPPAEAGDLALIFKLLP 179 (253)
T ss_dssp SCCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSCCCCBCSEEEEESCHH
T ss_pred CCCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCCCCCCcchHHHHHHHH
Confidence 3456899999999999999988 8999999999 88888776 57889999998 55543 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.+.+....+ ++.++|++ ++.++..
T Consensus 180 ~LE~q~~~~~~-~ll~aL~~---~~vvVsf 205 (253)
T 3frh_A 180 LLEREQAGSAM-ALLQSLNT---PRMAVSF 205 (253)
T ss_dssp HHHHHSTTHHH-HHHHHCBC---SEEEEEE
T ss_pred HhhhhchhhHH-HHHHHhcC---CCEEEEc
Confidence 99887766666 89999999 7655555
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.3e-10 Score=100.72 Aligned_cols=131 Identities=18% Similarity=0.143 Sum_probs=91.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-CC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-SG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-~~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++ +++++.+|+.+..+ .. |+|++...+|
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~~~ 155 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADVVFLSPPWG 155 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSEEEECCCCS
T ss_pred CCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCEEEECCCcC
Confidence 45799999999999999999874 78999999 78877665 58999999988334 33 9999999999
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
+.++.. ..+.++++.|+| ||.+++. .. ..... +.. .. -......+++..++...|..
T Consensus 156 ~~~~~~--~~~~~~~~~L~p---gG~~i~~-~~-~~~~~------------~~~---~~-lp~~~~~~~~~~~l~~~g~~ 212 (241)
T 3gdh_A 156 GPDYAT--AETFDIRTMMSP---DGFEIFR-LS-KKITN------------NIV---YF-LPRNADIDQVASLAGPGGQV 212 (241)
T ss_dssp SGGGGG--SSSBCTTTSCSS---CHHHHHH-HH-HHHCS------------CEE---EE-EETTBCHHHHHHTTCTTCCE
T ss_pred Ccchhh--hHHHHHHhhcCC---cceeHHH-HH-HhhCC------------ceE---EE-CCCCCCHHHHHHHhccCCCE
Confidence 877664 367789999999 9984443 21 11000 000 00 11223567788888887765
Q ss_pred ceEEEecCC
Q 044482 326 TIKVICRSY 334 (345)
Q Consensus 326 ~~~~~~~~~ 334 (345)
.+......+
T Consensus 213 ~i~~~~~~~ 221 (241)
T 3gdh_A 213 EIEQNFLNN 221 (241)
T ss_dssp EEEEEEETT
T ss_pred EEEehhhcC
Confidence 555554444
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-09 Score=90.11 Aligned_cols=102 Identities=14% Similarity=0.193 Sum_probs=74.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCCCceEEeccCCcCC---------C----C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAPCVEHVEGDMFVNV---------P----S 234 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~~~---------p----~ 234 (345)
..+.+.+..+....+|||+|||+|.++..++++ ..+++++|+.++. ...+++++.+|+.+.. + .
T Consensus 14 ~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~ 90 (191)
T 3dou_A 14 EFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-EIAGVRFIRCDIFKETIFDDIDRALREEGIE 90 (191)
T ss_dssp HHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-CCTTCEEEECCTTSSSHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-cCCCeEEEEccccCHHHHHHHHHHhhcccCC
Confidence 356666653456789999999999999999988 6789999995432 1228999999998731 1 1
Q ss_pred C-CEEEeccccc---cCC------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLL---NWS------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh---~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++..... ++. .+.+..+|+.+.+.|+| ||++++.
T Consensus 91 ~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~Lkp---GG~lv~k 138 (191)
T 3dou_A 91 KVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRN---GGNVLLK 138 (191)
T ss_dssp SEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred cceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccC---CCEEEEE
Confidence 3 9998853221 111 12245789999999999 9998876
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.1e-09 Score=90.33 Aligned_cols=90 Identities=10% Similarity=0.008 Sum_probs=69.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc--CCCC-C-CEEEecccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV--NVPS-G-QAIFTKSVL 244 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~--~~p~-~-D~i~~~~vl 244 (345)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.++ +++++.+|+.+ +.+. . |+|++...+
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~ 132 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPF 132 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCC
Confidence 347899999999999999887753 38999999 88887765 68999999877 3333 3 999998775
Q ss_pred ccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 245 LNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
| +.+ ...+++.+.+ .|+| ||.+++.
T Consensus 133 ~-~~~--~~~~l~~l~~~~~L~p---gG~l~i~ 159 (202)
T 2fpo_A 133 R-RGL--LEETINLLEDNGWLAD---EALIYVE 159 (202)
T ss_dssp S-TTT--HHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred C-CCc--HHHHHHHHHhcCccCC---CcEEEEE
Confidence 5 332 2466777765 4999 9988877
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.5e-09 Score=93.18 Aligned_cols=93 Identities=13% Similarity=0.135 Sum_probs=73.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---C------CCC-
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---V------PSG- 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~------p~~- 235 (345)
.+..+|||||||+|..+..+++..| +.+++++|+ |.+++.++ +++++.+|..+. + +..
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 4557999999999999999999988 789999999 77777654 689999998762 2 223
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+|++.. +......+++++.+.|+| ||.|++. +..
T Consensus 149 D~I~~d~-----~~~~~~~~l~~~~~~L~p---GG~lv~d-~~~ 183 (237)
T 3c3y_A 149 DFGFVDA-----DKPNYIKYHERLMKLVKV---GGIVAYD-NTL 183 (237)
T ss_dssp EEEEECS-----CGGGHHHHHHHHHHHEEE---EEEEEEE-CTT
T ss_pred CEEEECC-----chHHHHHHHHHHHHhcCC---CeEEEEe-cCC
Confidence 9998753 234457899999999999 9977766 544
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=89.04 Aligned_cols=94 Identities=15% Similarity=0.147 Sum_probs=75.5
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC-CC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV-PS-G 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~-p~-~ 235 (345)
.++...+ .....+|||+|||+|.++..++++ ..+++++|. +.+++.++ +++++.+|+.+.. +. .
T Consensus 82 ~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 158 (248)
T 2yvl_A 82 YIALKLN-LNKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGI 158 (248)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTC
T ss_pred HHHHhcC-CCCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCc
Confidence 4555555 667789999999999999999998 679999998 77766554 6889999998855 53 3
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++ +.++. ..+|+++.+.|+| ||++++.
T Consensus 159 ~D~v~~-----~~~~~--~~~l~~~~~~L~~---gG~l~~~ 189 (248)
T 2yvl_A 159 FHAAFV-----DVREP--WHYLEKVHKSLME---GAPVGFL 189 (248)
T ss_dssp BSEEEE-----CSSCG--GGGHHHHHHHBCT---TCEEEEE
T ss_pred ccEEEE-----CCcCH--HHHHHHHHHHcCC---CCEEEEE
Confidence 99987 23333 3679999999999 9999998
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.82 E-value=4.4e-09 Score=95.19 Aligned_cols=100 Identities=11% Similarity=0.171 Sum_probs=74.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
...+++.++ .....+|||||||+|.++..++++.. +++++|+ +.+++.++ +++++.+|+.+ +++.
T Consensus 17 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~L~~~~~--~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~~ 93 (285)
T 1zq9_A 17 INSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAK--KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 93 (285)
T ss_dssp HHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSS--EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEEcCcccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccchh
Confidence 345666666 66678999999999999999999854 7899998 77766543 58999999988 6665
Q ss_pred CCEEEeccccccCChhHHHHHHHH--------------H--HhhCCCCCCCcEEE
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKN--------------C--YDALPKSRKHGRTQ 273 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~--------------~--~~aL~p~~~gG~ll 273 (345)
-|+|++ +.-++|+.+....+|.. + +++++| ||+++
T Consensus 94 fD~vv~-nlpy~~~~~~~~~~l~~~~~~~~~~~m~qkEva~r~vlkP---Gg~~y 144 (285)
T 1zq9_A 94 FDTCVA-NLPYQISSPFVFKLLLHRPFFRCAILMFQREFALRLVAKP---GDKLY 144 (285)
T ss_dssp CSEEEE-ECCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHHCCT---TCTTC
T ss_pred hcEEEE-ecCcccchHHHHHHHhcCcchhhhhhhhhHHHHHHHhcCC---CCccc
Confidence 598887 44456666655566542 2 368999 98653
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.8e-09 Score=93.38 Aligned_cols=94 Identities=13% Similarity=0.117 Sum_probs=74.3
Q ss_pred ccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-----CC-C
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-----SG-Q 236 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-----~~-D 236 (345)
....+|||||||+|..+..+++..| +.+++++|. |.+++.|+ +++++.+|+.+. ++ .. |
T Consensus 71 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD 150 (232)
T 3cbg_A 71 TGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFD 150 (232)
T ss_dssp HTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEE
T ss_pred cCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcC
Confidence 3457999999999999999999987 689999999 77776654 689999998652 21 23 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
+|++... .+....+++++.+.|+| ||.|++. +...
T Consensus 151 ~V~~d~~-----~~~~~~~l~~~~~~Lkp---gG~lv~~-~~~~ 185 (232)
T 3cbg_A 151 LIFIDAD-----KRNYPRYYEIGLNLLRR---GGLMVID-NVLW 185 (232)
T ss_dssp EEEECSC-----GGGHHHHHHHHHHTEEE---EEEEEEE-CTTG
T ss_pred EEEECCC-----HHHHHHHHHHHHHHcCC---CeEEEEe-CCCc
Confidence 9987643 34456789999999999 9988887 6554
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.81 E-value=8.9e-09 Score=92.08 Aligned_cols=102 Identities=10% Similarity=-0.075 Sum_probs=72.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-----------CceEE--eccCCcCCCCC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-----------CVEHV--EGDMFVNVPSG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-----------ri~~~--~gd~~~~~p~~ 235 (345)
.+.+... +....+|||||||+|.++..++++ .+++++|+.+++..++ ++.++ .+|+.+-.+..
T Consensus 65 ~i~~~~~-~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~ 140 (265)
T 2oxt_A 65 WMEERGY-VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYTLGVGGHEVPRITESYGWNIVKFKSRVDIHTLPVER 140 (265)
T ss_dssp HHHHHTS-CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEECCCCSSCCCCCCCCBTTGGGEEEECSCCTTTSCCCC
T ss_pred HHHHcCC-CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECchhhhhhhhhhhhhhccCCCeEEEecccCHhHCCCCC
Confidence 3444422 556789999999999999999987 5899999955643221 47888 89998621333
Q ss_pred -CEEEeccccccCChh----H-HHHHHHHHHhhCCCCCCCc--EEEEEeccC
Q 044482 236 -QAIFTKSVLLNWSDE----Q-CLKILKNCYDALPKSRKHG--RTQLRSKRG 279 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~----~-~~~iL~~~~~aL~p~~~gG--~lli~~d~~ 279 (345)
|+|++... +...+. . ...+|+.+++.|+| || .+++- ...
T Consensus 141 fD~V~sd~~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~fv~k-v~~ 187 (265)
T 2oxt_A 141 TDVIMCDVG-ESSPKWSVESERTIKILELLEKWKVK---NPSADFVVK-VLC 187 (265)
T ss_dssp CSEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCEEEEE-ESC
T ss_pred CcEEEEeCc-ccCCccchhHHHHHHHHHHHHHHhcc---CCCeEEEEE-eCC
Confidence 99999766 433221 1 22489999999999 99 88876 543
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.81 E-value=4.3e-09 Score=91.70 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=72.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCC------CCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCCC-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP------QITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p------~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p~- 234 (345)
.....+|||||||+|.++..+++..+ ..+++++|+ +.+++.++ +++++.+|..++++.
T Consensus 82 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~ 161 (227)
T 1r18_A 82 LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGYPPN 161 (227)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCCGGG
T ss_pred CCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCCCcC
Confidence 44567999999999999999998765 368999998 77776554 588999999886653
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ |+|++...+|++. +++.+.|+| ||++++.
T Consensus 162 ~~fD~I~~~~~~~~~~--------~~~~~~Lkp---gG~lvi~ 193 (227)
T 1r18_A 162 APYNAIHVGAAAPDTP--------TELINQLAS---GGRLIVP 193 (227)
T ss_dssp CSEEEEEECSCBSSCC--------HHHHHTEEE---EEEEEEE
T ss_pred CCccEEEECCchHHHH--------HHHHHHhcC---CCEEEEE
Confidence 3 9999999998865 567889999 9999887
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.81 E-value=6.2e-09 Score=93.51 Aligned_cols=97 Identities=12% Similarity=0.089 Sum_probs=77.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-CC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP------------CVEHVEGDMFV-NV 232 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~~ 232 (345)
..+++.++ .....+|||+|||+|.++..+++. .|..+++++|. +.+++.++ +++++.+|+.+ ++
T Consensus 89 ~~i~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~ 167 (280)
T 1i9g_A 89 AQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSEL 167 (280)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCC
T ss_pred HHHHHHcC-CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCC
Confidence 35666666 677789999999999999999996 57889999999 77655332 68899999987 45
Q ss_pred CC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 PS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+. . |+|++ +.++. ..+|+++++.|+| ||++++.
T Consensus 168 ~~~~~D~v~~-----~~~~~--~~~l~~~~~~L~p---gG~l~~~ 202 (280)
T 1i9g_A 168 PDGSVDRAVL-----DMLAP--WEVLDAVSRLLVA---GGVLMVY 202 (280)
T ss_dssp CTTCEEEEEE-----ESSCG--GGGHHHHHHHEEE---EEEEEEE
T ss_pred CCCceeEEEE-----CCcCH--HHHHHHHHHhCCC---CCEEEEE
Confidence 53 3 99987 23333 2689999999999 9999998
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=1.5e-08 Score=92.39 Aligned_cols=93 Identities=15% Similarity=0.090 Sum_probs=67.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-----hhHhhhCC-------CceEEec-cCCcCCCC-CCEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-----PYVIKNAP-------CVEHVEG-DMFVNVPS-GQAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~-------ri~~~~g-d~~~~~p~-~D~i~~~~ 242 (345)
+....+|||||||+|.++..++++ .+++++|+ +.+++..+ ++.++.+ |+.+..+. .|+|++..
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~~~~~~~~v~~~~~~D~~~l~~~~fD~V~sd~ 156 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCDTLLCDI 156 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCSEEEECC
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHhhhcCCCCeEEEeccccccCCcCCCCEEEECC
Confidence 455689999999999999999987 37889998 53333221 6899999 98863233 39999976
Q ss_pred ccc---cCChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLL---NWSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh---~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++ ...+.. ...+|+.+++.|+| ||.+++.
T Consensus 157 ~~~~g~~~~d~~~~l~~L~~~~~~Lkp---GG~~v~k 190 (305)
T 2p41_A 157 GESSPNPTVEAGRTLRVLNLVENWLSN---NTQFCVK 190 (305)
T ss_dssp CCCCSSHHHHHHHHHHHHHHHHHHCCT---TCEEEEE
T ss_pred ccccCcchhhHHHHHHHHHHHHHHhCC---CCEEEEE
Confidence 653 222222 22689999999999 9977664
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.80 E-value=2e-09 Score=96.87 Aligned_cols=94 Identities=15% Similarity=0.091 Sum_probs=72.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
+..+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|..+.+ + .. |+|++
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~ 154 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV 154 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence 457999999999999999998777789999999 77776433 7899999988732 2 33 99998
Q ss_pred ccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+..+.+. ...+++++++.|+| ||.+++.
T Consensus 155 d~~~~~~~~~~l~~~~~~~~~~~~L~p---gG~lv~~ 188 (275)
T 1iy9_A 155 DSTEPVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (275)
T ss_dssp SCSSCCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred CCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 65443322211 14689999999999 9988777
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=9.2e-09 Score=92.51 Aligned_cols=95 Identities=8% Similarity=-0.058 Sum_probs=69.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC-----------CceEE--eccCCcCCCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP-----------CVEHV--EGDMFVNVPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~-----------ri~~~--~gd~~~~~p~~-D~i~~~~ 242 (345)
+....+|||||||+|.++..++++ .+++++|+.+++..++ +++++ .+|+.+-.+.. |+|++..
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~~~~fD~Vvsd~ 156 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYTLGTSGHEKPRLVETFGWNLITFKSKVDVTKMEPFQADTVLCDI 156 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEECCCCTTSCCCCCCCCTTGGGEEEECSCCGGGCCCCCCSEEEECC
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc---CCEEEEECchhhhhhhhchhhhhhcCCCeEEEeccCcHhhCCCCCcCEEEECC
Confidence 556789999999999999999987 5899999955643321 57888 99987611333 9999986
Q ss_pred ccccCChh----H-HHHHHHHHHhhCCCCCCCc--EEEEEeccC
Q 044482 243 VLLNWSDE----Q-CLKILKNCYDALPKSRKHG--RTQLRSKRG 279 (345)
Q Consensus 243 vlh~~~d~----~-~~~iL~~~~~aL~p~~~gG--~lli~~d~~ 279 (345)
. +...+. . ...+|+.+++.|+| || .+++. ...
T Consensus 157 ~-~~~~~~~~d~~~~l~~L~~~~r~Lkp---GG~~~~v~~-~~~ 195 (276)
T 2wa2_A 157 G-ESNPTAAVEASRTLTVLNVISRWLEY---NQGCGFCVK-VLN 195 (276)
T ss_dssp C-CCCSCHHHHHHHHHHHHHHHHHHHHH---STTCEEEEE-ESC
T ss_pred C-cCCCchhhhHHHHHHHHHHHHHHhcc---CCCcEEEEE-eCC
Confidence 6 433221 1 22479999999999 99 88776 443
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.6e-09 Score=96.58 Aligned_cols=95 Identities=17% Similarity=0.065 Sum_probs=74.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~ 239 (345)
....+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.. +.. |+|+
T Consensus 77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (283)
T 2i7c_A 77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII 156 (283)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence 3557999999999999999998878889999999 77776543 6889999987622 333 9999
Q ss_pred eccccccCChhHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....+..+.+.. ..+++++++.|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 191 (283)
T 2i7c_A 157 VDSSDPIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 191 (283)
T ss_dssp EECCCTTTGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 8654443233222 5899999999999 9988877
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=98.77 E-value=3.6e-08 Score=88.91 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=68.3
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh--hhHhhhCC-------------------CceEEeccCCc---CC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL--PYVIKNAP-------------------CVEHVEGDMFV---NV 232 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl--p~~i~~a~-------------------ri~~~~gd~~~---~~ 232 (345)
.....+|||||||+|.++..+++.. ..+++++|+ +.+++.++ +++++..|..+ .+
T Consensus 77 ~~~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 155 (281)
T 3bzb_A 77 LIAGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSL 155 (281)
T ss_dssp GTTTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHH
T ss_pred hcCCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHH
Confidence 3455799999999999999888753 348999999 56666543 25565444322 22
Q ss_pred ----C-CC-CEEEeccccccCChhHHHHHHHHHHhhCC---CCCCCcEEEEE
Q 044482 233 ----P-SG-QAIFTKSVLLNWSDEQCLKILKNCYDALP---KSRKHGRTQLR 275 (345)
Q Consensus 233 ----p-~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~---p~~~gG~lli~ 275 (345)
+ .. |+|++..++|+.++. ..+++.+++.|+ |+ +||+++++
T Consensus 156 ~~~~~~~~fD~Ii~~dvl~~~~~~--~~ll~~l~~~Lk~~~p~-~gG~l~v~ 204 (281)
T 3bzb_A 156 QRCTGLQRFQVVLLADLLSFHQAH--DALLRSVKMLLALPAND-PTAVALVT 204 (281)
T ss_dssp HHHHSCSSBSEEEEESCCSCGGGH--HHHHHHHHHHBCCTTTC-TTCEEEEE
T ss_pred HhhccCCCCCEEEEeCcccChHHH--HHHHHHHHHHhcccCCC-CCCEEEEE
Confidence 2 23 999999999885543 588999999999 62 27877665
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.77 E-value=8.6e-09 Score=89.64 Aligned_cols=88 Identities=13% Similarity=0.084 Sum_probs=72.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-----CCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC----
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-----PQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV---- 232 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-----p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~---- 232 (345)
.....+|||||||+|.++..+++.. |+.+++++|. +.+++.++ +++++.+|+.+..
T Consensus 78 ~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~ 157 (227)
T 2pbf_A 78 LKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQVNEEEK 157 (227)
T ss_dssp SCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGGCCHHHH
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHhcccccC
Confidence 4456799999999999999999986 6789999998 77766544 4889999998743
Q ss_pred C--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 233 P--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 233 p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ .. |+|++...+|++ ++++++.|+| ||++++.
T Consensus 158 ~~~~~fD~I~~~~~~~~~--------~~~~~~~Lkp---gG~lv~~ 192 (227)
T 2pbf_A 158 KELGLFDAIHVGASASEL--------PEILVDLLAE---NGKLIIP 192 (227)
T ss_dssp HHHCCEEEEEECSBBSSC--------CHHHHHHEEE---EEEEEEE
T ss_pred ccCCCcCEEEECCchHHH--------HHHHHHhcCC---CcEEEEE
Confidence 2 23 999999999865 4677899999 9998887
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=98.77 E-value=5e-09 Score=89.70 Aligned_cols=90 Identities=8% Similarity=-0.021 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC----C-C-CCEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV----P-S-GQAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~----p-~-~D~i~~ 240 (345)
...+|||+|||+|.++..++++.. .+++++|+ +.+++.++ +++++.+|+.+.. + . -|+|++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 131 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL 131 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred CCCeEEEcCCccCHHHHHHHHccC-CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEE
Confidence 346899999999999999887653 58999999 78877654 4789999987621 1 3 499999
Q ss_pred ccccccCChhHHHHHHHHH--HhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNC--YDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~--~~aL~p~~~gG~lli~ 275 (345)
...+| .. ....+++.+ .+.|+| ||.+++.
T Consensus 132 ~~~~~-~~--~~~~~l~~~~~~~~Lkp---gG~l~i~ 162 (201)
T 2ift_A 132 DPPFH-FN--LAEQAISLLCENNWLKP---NALIYVE 162 (201)
T ss_dssp CCCSS-SC--HHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred CCCCC-Cc--cHHHHHHHHHhcCccCC---CcEEEEE
Confidence 87765 33 345778888 567999 9998887
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.77 E-value=3.9e-09 Score=97.57 Aligned_cols=95 Identities=14% Similarity=0.045 Sum_probs=73.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC---CCC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN---VPS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~---~p~-~-D~i 238 (345)
....+|||||||+|.++..++++.|..+++++|+ +.+++.|+ |++++.+|+++. .+. . |+|
T Consensus 119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI 198 (334)
T 1xj5_A 119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 198 (334)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence 3557999999999999999999888889999999 77776543 689999998762 333 3 999
Q ss_pred EeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++....+....+. ...+++++++.|+| ||.+++.
T Consensus 199 i~d~~~p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 234 (334)
T 1xj5_A 199 IVDSSDPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 234 (334)
T ss_dssp EECCCCTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EECCCCccCcchhhhHHHHHHHHHHhcCC---CcEEEEe
Confidence 9864422111111 35799999999999 9988876
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=2e-09 Score=106.79 Aligned_cols=98 Identities=13% Similarity=0.106 Sum_probs=77.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~--D~i~~~~v 243 (345)
.+.+|||||||.|.++..+++. +.+++++|. +.+|+.|+ +++|..+|+.+ +.+++ |+|++..+
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~ 143 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV 143 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred CCCeEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence 4568999999999999999987 678999999 78887665 58899998865 23333 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
|||.+|++...-+.++.+.|++ +++.++. ..+..+
T Consensus 144 ~ehv~~~~~~~~~~~~~~tl~~---~~~~~~~-~~~~~e 178 (569)
T 4azs_A 144 FHHIVHLHGIDEVKRLLSRLAD---VTQAVIL-ELAVKE 178 (569)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHH---HSSEEEE-ECCCTT
T ss_pred hhcCCCHHHHHHHHHHHHHhcc---ccceeeE-Eecccc
Confidence 9999988755556667778888 7777776 555443
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.4e-09 Score=94.47 Aligned_cols=93 Identities=13% Similarity=0.052 Sum_probs=75.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC-CCCC-CEEEecccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN-VPSG-QAIFTKSVL 244 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~-~p~~-D~i~~~~vl 244 (345)
+....+|||+|||+|.++..++++.+..+++++|+ |.+++.++ +++++.+|+.+. .+.. |+|++....
T Consensus 117 ~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~d~p~ 196 (272)
T 3a27_A 117 SNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIMGYVH 196 (272)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEECCCS
T ss_pred cCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEECCcc
Confidence 45667999999999999999999998889999999 88877665 578999999875 2223 999887553
Q ss_pred ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 245 LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 245 h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
....+++++.+.|+| ||.+++. +..
T Consensus 197 ------~~~~~l~~~~~~Lkp---gG~l~~s-~~~ 221 (272)
T 3a27_A 197 ------KTHKFLDKTFEFLKD---RGVIHYH-ETV 221 (272)
T ss_dssp ------SGGGGHHHHHHHEEE---EEEEEEE-EEE
T ss_pred ------cHHHHHHHHHHHcCC---CCEEEEE-EcC
Confidence 234689999999999 9999888 443
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=3.4e-09 Score=96.75 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=71.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC--CC-CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN--VP-SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~--~p-~~-D~i~ 239 (345)
.+..+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|..+. .+ .. |+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 4557999999999999999999888889999999 77776443 689999998762 22 23 9999
Q ss_pred eccccccCChh--HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDE--QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~--~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....+.-+.. ....+++++++.|+| ||.+++.
T Consensus 174 ~d~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 208 (304)
T 2o07_A 174 TDSSDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 208 (304)
T ss_dssp EECC-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred ECCCCCCCcchhhhHHHHHHHHHhccCC---CeEEEEe
Confidence 86544322211 124689999999999 9988877
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=5.1e-08 Score=91.52 Aligned_cols=119 Identities=9% Similarity=-0.002 Sum_probs=89.0
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCC-C-CEEEecc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPS-G-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~-~-D~i~~~~ 242 (345)
+....+|||+|||+|.++..+++..+..+++++|+ +.+++.|+ +++++.+|+.+ +.+. . |+|+++-
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~~~fD~Ii~np 294 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYVDSVDFAISNL 294 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTCSCEEEEEEEC
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcccCCcCEEEECC
Confidence 45668999999999999999999988778999999 88887766 68999999998 6553 3 9999975
Q ss_pred ccccCC------hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 243 VLLNWS------DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 243 vlh~~~------d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
..+... .+--..+++.+++.| + |+.+++. . +.+.++
T Consensus 295 Pyg~r~~~~~~~~~ly~~~~~~l~r~l-~---g~~~~i~-~---------------------------------~~~~~~ 336 (373)
T 3tm4_A 295 PYGLKIGKKSMIPDLYMKFFNELAKVL-E---KRGVFIT-T---------------------------------EKKAIE 336 (373)
T ss_dssp CCC------CCHHHHHHHHHHHHHHHE-E---EEEEEEE-S---------------------------------CHHHHH
T ss_pred CCCcccCcchhHHHHHHHHHHHHHHHc-C---CeEEEEE-C---------------------------------CHHHHH
Confidence 543321 111257888999988 6 5545554 1 145567
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
+.+++.||+..+...+.
T Consensus 337 ~~~~~~G~~~~~~~~~~ 353 (373)
T 3tm4_A 337 EAIAENGFEIIHHRVIG 353 (373)
T ss_dssp HHHHHTTEEEEEEEEEE
T ss_pred HHHHHcCCEEEEEEEEE
Confidence 78999999998877663
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-09 Score=97.26 Aligned_cols=93 Identities=16% Similarity=0.099 Sum_probs=69.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
+..+|||||||+|..+..+++..|..+++++|+ |.+++.|+ |++++.+|+.+.+ + .. |+|++
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii~ 187 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVIIT 187 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEEE
Confidence 457999999999999999999888889999999 77776443 6889999987632 2 33 99998
Q ss_pred ccccccCChh-HH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDE-QC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~-~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...-+ +.+. .. ..+++++++.|+| ||.+++.
T Consensus 188 d~~~~-~~~~~~l~t~~~l~~~~~~Lkp---gG~lv~~ 221 (314)
T 2b2c_A 188 DSSDP-VGPAESLFGQSYYELLRDALKE---DGILSSQ 221 (314)
T ss_dssp CCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred cCCCC-CCcchhhhHHHHHHHHHhhcCC---CeEEEEE
Confidence 65433 3322 21 5899999999999 9988887
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-09 Score=96.61 Aligned_cols=94 Identities=12% Similarity=0.067 Sum_probs=73.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC--C-CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV--P-SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~--p-~~-D~i~ 239 (345)
...+|||||||+|.++..++++.|..+++++|+ |.+++.++ |++++.+|+.+.+ + .. |+|+
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 156 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI 156 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence 457999999999999999999888889999999 77765432 6889999987632 2 33 9999
Q ss_pred ecccccc---CChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLN---WSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~---~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+....|. -+.+. ...+++++++.|+| ||.+++.
T Consensus 157 ~d~~~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 194 (314)
T 1uir_A 157 IDLTDPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (314)
T ss_dssp EECCCCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred ECCCCcccccCcchhccHHHHHHHHHHhcCC---CcEEEEE
Confidence 9766654 11111 25789999999999 9988887
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-09 Score=96.92 Aligned_cols=93 Identities=16% Similarity=0.077 Sum_probs=72.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~~ 240 (345)
+..+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.. +.. |+|++
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~ 195 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV 195 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence 457999999999999999998878889999999 77776543 6889999987632 233 99998
Q ss_pred ccccccCCh-hHH--HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD-EQC--LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d-~~~--~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...- .+.. +.. ..+++++++.|+| ||.+++.
T Consensus 196 d~~~-p~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 229 (321)
T 2pt6_A 196 DSSD-PIGPAETLFNQNFYEKIYNALKP---NGYCVAQ 229 (321)
T ss_dssp ECCC-SSSGGGGGSSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCcC-CCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 6432 2222 211 5889999999999 9988876
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.7e-08 Score=87.65 Aligned_cols=88 Identities=22% Similarity=0.141 Sum_probs=71.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCC-C-C-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVP-S-G-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p-~-~-D~ 237 (345)
.....+|||||||+|.++..+++.. |..+++++|+ +.+++.++ +++++.+|+....+ . . |+
T Consensus 75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~ 154 (226)
T 1i1n_A 75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA 154 (226)
T ss_dssp SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence 3456799999999999999999885 6679999999 77776543 58899999876332 3 3 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++...++++. +++++.|+| ||++++.
T Consensus 155 i~~~~~~~~~~--------~~~~~~Lkp---gG~lv~~ 181 (226)
T 1i1n_A 155 IHVGAAAPVVP--------QALIDQLKP---GGRLILP 181 (226)
T ss_dssp EEECSBBSSCC--------HHHHHTEEE---EEEEEEE
T ss_pred EEECCchHHHH--------HHHHHhcCC---CcEEEEE
Confidence 99999987654 577899999 9999887
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-08 Score=93.94 Aligned_cols=105 Identities=10% Similarity=0.138 Sum_probs=79.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCCCceEEeccCCcCCC-CC-CEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAPCVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
+..+++.++ .....+|||+|||+|.++..+++++ +..+++++|+ |.+++.|.+++++.+|+++..+ .. |+|+++-
T Consensus 28 ~~~~~~~~~-~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a~~~~~~~~D~~~~~~~~~fD~Ii~NP 106 (421)
T 2ih2_A 28 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP 106 (421)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHHHHhhc-cCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhCCCCcEEeCChhhcCccCCCCEEEECc
Confidence 334555554 3345699999999999999999987 6789999999 8888888889999999998444 34 9999952
Q ss_pred cc----------ccCChhHH-----------------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VL----------LNWSDEQC-----------------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vl----------h~~~d~~~-----------------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-. +|++++.. ..+++++.+.|+| ||+++++
T Consensus 107 Py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---~G~~~~i 163 (421)
T 2ih2_A 107 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFV 163 (421)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCC---CCEEEEE
Confidence 21 11333322 2579999999999 9998887
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-08 Score=85.53 Aligned_cols=85 Identities=11% Similarity=0.072 Sum_probs=64.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC-CEEEeccccccCChh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDE 250 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~ 250 (345)
.....+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+.+ +|.. |+|++...+|++++.
T Consensus 49 ~~~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~~~~ 126 (200)
T 1ne2_A 49 NIGGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPPFGSVVKH 126 (200)
T ss_dssp SSBTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCCC------
T ss_pred CCCCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhcCCCEEEECcHHH-CCCCeeEEEECCCchhccCc
Confidence 345579999999999999999987 5557999999 88888776 68999999987 4444 999999999999875
Q ss_pred HHHHHHHHHHhhC
Q 044482 251 QCLKILKNCYDAL 263 (345)
Q Consensus 251 ~~~~iL~~~~~aL 263 (345)
...++++++.+.+
T Consensus 127 ~~~~~l~~~~~~~ 139 (200)
T 1ne2_A 127 SDRAFIDKAFETS 139 (200)
T ss_dssp -CHHHHHHHHHHE
T ss_pred hhHHHHHHHHHhc
Confidence 5567888888875
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=7.5e-09 Score=94.15 Aligned_cols=94 Identities=19% Similarity=0.164 Sum_probs=69.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC--C-CC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV--P-SG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~--p-~~-D~i~~ 240 (345)
...+|||||||+|.++..+++..|..+++++|+ |.+++.++ |++++.+|+.+.+ + .. |+|++
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~ 169 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII 169 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence 347999999999999999999878889999999 77766433 6899999987632 2 33 99997
Q ss_pred ccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
...-+..... ....+++++++.|+| ||.+++.
T Consensus 170 d~~~~~~~~~~~l~~~~~l~~~~~~Lkp---gG~lv~~ 204 (296)
T 1inl_A 170 DSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 204 (296)
T ss_dssp EC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred cCCCcccCchhhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 5332211111 115789999999999 9988877
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.68 E-value=2.4e-08 Score=92.72 Aligned_cols=94 Identities=11% Similarity=0.124 Sum_probs=77.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCC-----CeEEEeeh-hhHhhhCC--------CceEEeccCCcCCC-CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ-----ITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++..+. .+++++|+ |.+++.|+ +++++.+|.+++.+ .. |+|+++-
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~~~~~fD~Ii~NP 209 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDL 209 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEEC
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCccccCCccEEEECC
Confidence 4579999999999999999988765 68999999 77777766 58899999998655 33 9999998
Q ss_pred ccccCChhHH----------------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNWSDEQC----------------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~~d~~~----------------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++++.++. ..+++++.+.|+| ||+++++
T Consensus 210 Pfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~---gG~~~~v 255 (344)
T 2f8l_A 210 PVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFL 255 (344)
T ss_dssp CCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCC---CCEEEEE
Confidence 8777765542 2589999999999 9998888
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.5e-08 Score=89.61 Aligned_cols=99 Identities=14% Similarity=0.086 Sum_probs=73.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-CC-----CCC-CEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NV-----PSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~-----p~~-D~i 238 (345)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ +++++.+|+.+ +. +.. |+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 455679999999999999999999877 79999999 77766544 68899999876 32 333 999
Q ss_pred Eec------ccccc---CChh-------HHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 239 FTK------SVLLN---WSDE-------QCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 239 ~~~------~vlh~---~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
++. .+++. |+.+ ...++|+++.+.|+| ||++++. ...
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~s-tcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK---DGELVYS-TCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE---EEEEEEE-ESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCEEEEE-ECC
Confidence 986 23321 2222 126899999999999 9999887 543
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3.5e-08 Score=87.17 Aligned_cols=87 Identities=15% Similarity=0.186 Sum_probs=64.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS-GQ 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~-~D 236 (345)
...+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+ +++. .+
T Consensus 19 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~ 95 (244)
T 1qam_A 19 IDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQS 95 (244)
T ss_dssp HHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSCC
T ss_pred HHHHHHhCC-CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCCcccCCC
Confidence 445666666 6667899999999999999999986 68999998 77776554 78999999998 6664 35
Q ss_pred EEEeccccccCChhHHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL 256 (345)
..++.+.-++++.+....++
T Consensus 96 ~~vv~nlPy~~~~~~l~~~l 115 (244)
T 1qam_A 96 YKIFGNIPYNISTDIIRKIV 115 (244)
T ss_dssp CEEEEECCGGGHHHHHHHHH
T ss_pred eEEEEeCCcccCHHHHHHHH
Confidence 56666666665554444443
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=1.2e-08 Score=92.13 Aligned_cols=93 Identities=17% Similarity=0.154 Sum_probs=70.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC-----------------C--CceEEeccCCcCC--CCC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA-----------------P--CVEHVEGDMFVNV--PSG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a-----------------~--ri~~~~gd~~~~~--p~~- 235 (345)
...+|||||||+|.++..++++ |..+++++|+ |.+++.+ . |++++.+|..+.+ +..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~f 153 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF 153 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcccCCe
Confidence 4579999999999999999998 8889999999 7776532 2 6889999986522 333
Q ss_pred CEEEeccccccCChhH--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQ--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++....+..+.+. ...+++++++.|+| ||.+++.
T Consensus 154 D~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~p---gG~lv~~ 192 (281)
T 1mjf_A 154 DVIIADSTDPVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 192 (281)
T ss_dssp EEEEEECCCCC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred eEEEECCCCCCCcchhhhHHHHHHHHHHhcCC---CcEEEEE
Confidence 9999866543322222 25789999999999 9988776
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-08 Score=92.86 Aligned_cols=90 Identities=16% Similarity=0.093 Sum_probs=68.3
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~ 247 (345)
.++|||||||+|.++...+++. ..+++++|..++++.|+ +|+++.+|+.+ .+|+. |+|++-+.-+.+
T Consensus 84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE~~~~~l 162 (376)
T 4hc4_A 84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASAIWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSEWMGYGL 162 (376)
T ss_dssp TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCBTTB
T ss_pred CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChHHHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEeecccccc
Confidence 4689999999999987766653 34799999866766554 79999999988 77865 999885544333
Q ss_pred Chh-HHHHHHHHHHhhCCCCCCCcEEE
Q 044482 248 SDE-QCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 248 ~d~-~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
-.+ ....++....+.|+| ||.++
T Consensus 163 ~~e~~l~~~l~a~~r~Lkp---~G~~i 186 (376)
T 4hc4_A 163 LHESMLSSVLHARTKWLKE---GGLLL 186 (376)
T ss_dssp TTTCSHHHHHHHHHHHEEE---EEEEE
T ss_pred cccchhhhHHHHHHhhCCC---CceEC
Confidence 333 345778888899999 88764
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.65 E-value=2.8e-08 Score=88.66 Aligned_cols=84 Identities=11% Similarity=-0.004 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCCCC-CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
+..+|||||||+|.++..+++. + .+++++|+ |.+++.|+ |++++.+|..+.. .. |+|++.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-~~fD~Ii~d-- 146 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-KKYDLIFCL-- 146 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-CCEEEEEES--
T ss_pred CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-hhCCEEEEC--
Confidence 4579999999999999999988 7 89999999 88888765 5788999988743 43 999875
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+++. .+++++++.|+| ||.+++.
T Consensus 147 ---~~dp~--~~~~~~~~~L~p---gG~lv~~ 170 (262)
T 2cmg_A 147 ---QEPDI--HRIDGLKRMLKE---DGVFISV 170 (262)
T ss_dssp ---SCCCH--HHHHHHHTTEEE---EEEEEEE
T ss_pred ---CCChH--HHHHHHHHhcCC---CcEEEEE
Confidence 34443 489999999999 9988776
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-07 Score=87.58 Aligned_cols=147 Identities=18% Similarity=0.154 Sum_probs=94.9
Q ss_pred ccceEEecCCccHHHHHH--------HHHC-------CCCeEEEeehhhH--------hhhCC-----------------
Q 044482 180 LKKLVDVASCLGANMSLI--------VNTY-------PQITGINFDLPYV--------IKNAP----------------- 219 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l--------~~~~-------p~~~~~~~Dlp~~--------i~~a~----------------- 219 (345)
.-+|+|+|||+|..+..+ .+++ |++++..-|+|.- ++..+
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 468999999999988877 3444 7889999998642 22210
Q ss_pred CceEEeccCCc-CCCCC--CEEEeccccccCCh------------------------------------hHHHHHHHHHH
Q 044482 220 CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD------------------------------------EQCLKILKNCY 260 (345)
Q Consensus 220 ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d------------------------------------~~~~~iL~~~~ 260 (345)
=+.-++|.|.. .+|++ |+++++++||.+++ .+...+|+..+
T Consensus 133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra 212 (374)
T 3b5i_A 133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA 212 (374)
T ss_dssp EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 13456788888 77865 99999999998762 13456799999
Q ss_pred hhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chh-----hhhhc------------CCCccCCHHHHHHHHH-H
Q 044482 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIV-----MYDLF------------PQAKGRTAGEFKALAM-A 321 (345)
Q Consensus 261 ~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~-----~~~~~------------~~~~~rt~~e~~~ll~-~ 321 (345)
+.|+| ||++++. -.-.++. .+.........+ +.. -|+.. ---..++.+|++++++ +
T Consensus 213 ~eL~p---GG~mvl~-~~gr~~~-~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~ 287 (374)
T 3b5i_A 213 AEVKR---GGAMFLV-CLGRTSV-DPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDAN 287 (374)
T ss_dssp HHEEE---EEEEEEE-EEECCCS-STTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHH
T ss_pred HHhCC---CCEEEEE-EecCCCC-ccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhc
Confidence 99999 9999887 4333221 100000000111 110 01110 0113479999999998 5
Q ss_pred CCCCceEEEe
Q 044482 322 AGFGTIKVIC 331 (345)
Q Consensus 322 aGf~~~~~~~ 331 (345)
.||++.++..
T Consensus 288 ~~F~I~~le~ 297 (374)
T 3b5i_A 288 GSFAIDKLVV 297 (374)
T ss_dssp CSEEEEEEEE
T ss_pred CCcEEEEEEE
Confidence 9999887643
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.64 E-value=4.1e-08 Score=94.50 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=80.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CC-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VP-S 234 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p-~ 234 (345)
+...++ .....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ +++++.+|+.+ + ++ .
T Consensus 251 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~ 329 (450)
T 2yxl_A 251 ASIVLD-PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEE 329 (450)
T ss_dssp HHHHHC-CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSS
T ss_pred HHHhcC-CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccC
Confidence 344445 556679999999999999999999887 79999999 66665443 68899999987 3 44 3
Q ss_pred C-CEEEe------ccccccCChh-------HH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 235 G-QAIFT------KSVLLNWSDE-------QC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 235 ~-D~i~~------~~vlh~~~d~-------~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
. |+|++ ..+++..++. +. ..+|+++.+.|+| ||++++. +...
T Consensus 330 ~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~lvy~-tcs~ 392 (450)
T 2yxl_A 330 VADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKP---GGRLLYT-TCSI 392 (450)
T ss_dssp CEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEE---EEEEEEE-ESCC
T ss_pred CCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-eCCC
Confidence 3 99996 3455544432 11 5789999999999 9999988 6543
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=90.02 Aligned_cols=102 Identities=13% Similarity=0.166 Sum_probs=76.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC-CCE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS-GQA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~-~D~ 237 (345)
..+++.++ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+.+ +++. +..
T Consensus 19 ~~i~~~~~-~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~~~~~~~f 95 (245)
T 1yub_A 19 NQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQRY 95 (245)
T ss_dssp HHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSEE
T ss_pred HHHHHhcC-CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcCcccCCCc
Confidence 35566666 6667899999999999999999985 68999999 77877765 58899999988 6653 344
Q ss_pred EEeccccccCChhHHHHHH--------------HHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKIL--------------KNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL--------------~~~~~aL~p~~~gG~lli~ 275 (345)
+++.+.-++.+.+....++ +.+.+.|+| ||++.+.
T Consensus 96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~---~G~l~v~ 144 (245)
T 1yub_A 96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDI---HRTLGLL 144 (245)
T ss_dssp EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCG---GGSHHHH
T ss_pred EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCC---CCchhhh
Confidence 5555554555544444444 558899999 9987776
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-07 Score=87.80 Aligned_cols=91 Identities=13% Similarity=0.087 Sum_probs=69.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCC------CCC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNV------PSG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~------p~~-D~i~ 239 (345)
...+|||+|||+|.++..+++... +++++|+ +.+++.++ +++++.+|+++.. ... |+|+
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga--~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGA--EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTC--EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCcEEEcccccCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 346899999999999999998643 8999999 78877665 2899999998732 223 9999
Q ss_pred eccc---------cccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSV---------LLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~v---------lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.-- ++++ .+....+++++.+.|+| ||.+++.
T Consensus 231 ~dPP~~~~~~~~~~~~~-~~~~~~ll~~~~~~Lkp---gG~lli~ 271 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQL-FDHLPLMLDICREILSP---KALGLVL 271 (332)
T ss_dssp ECCCSEEECTTCCEEEH-HHHHHHHHHHHHHTBCT---TCCEEEE
T ss_pred ECCccccCCchHHHHHH-HHHHHHHHHHHHHhcCc---CcEEEEE
Confidence 8422 1111 22346899999999999 9987776
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.7e-07 Score=84.67 Aligned_cols=116 Identities=10% Similarity=0.049 Sum_probs=81.5
Q ss_pred cccccceEEecC------CccHHHHHHHHHCC-CCeEEEeehhhHhhhCCCceE-EeccCCc-CCCCC-CEEEecccccc
Q 044482 177 FKELKKLVDVAS------CLGANMSLIVNTYP-QITGINFDLPYVIKNAPCVEH-VEGDMFV-NVPSG-QAIFTKSVLLN 246 (345)
Q Consensus 177 ~~~~~~vlDiGg------G~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~ri~~-~~gd~~~-~~p~~-D~i~~~~vlh~ 246 (345)
.....+|||||| |+|. ..+++..| +.+++++|+.+.+ .++++ +.+|+.+ +++.. |+|++....+.
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~v---~~v~~~i~gD~~~~~~~~~fD~Vvsn~~~~~ 135 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDFV---SDADSTLIGDCATVHTANKWDLIISDMYDPR 135 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCCB---CSSSEEEESCGGGCCCSSCEEEEEECCCCCC
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCCC---CCCEEEEECccccCCccCcccEEEEcCCccc
Confidence 566789999999 4477 55566776 6899999994433 47899 9999988 44444 99998533211
Q ss_pred ---C--C----hhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHH
Q 044482 247 ---W--S----DEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKA 317 (345)
Q Consensus 247 ---~--~----d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ 317 (345)
+ + .+....+|+++++.|+| ||++++. ..... ...++.+
T Consensus 136 ~g~~~~d~~~~~~l~~~~l~~a~r~Lkp---GG~~v~~-~~~~~-----------------------------~~~~l~~ 182 (290)
T 2xyq_A 136 TKHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK-ITEHS-----------------------------WNADLYK 182 (290)
T ss_dssp ---CCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE-ECSSS-----------------------------CCHHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHhcCC---CcEEEEE-EeccC-----------------------------CHHHHHH
Confidence 1 1 22345799999999999 9999886 32110 1236778
Q ss_pred HHHHCCCCceEEE
Q 044482 318 LAMAAGFGTIKVI 330 (345)
Q Consensus 318 ll~~aGf~~~~~~ 330 (345)
++++.||..+++.
T Consensus 183 ~l~~~GF~~v~~~ 195 (290)
T 2xyq_A 183 LMGHFSWWTAFVT 195 (290)
T ss_dssp HHTTEEEEEEEEE
T ss_pred HHHHcCCcEEEEE
Confidence 8888888877665
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.2e-07 Score=86.20 Aligned_cols=95 Identities=17% Similarity=0.198 Sum_probs=67.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~ 235 (345)
...+++.++ .....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ +.+.-
T Consensus 31 ~~~i~~~~~-~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~ 107 (299)
T 2h1r_A 31 LDKIIYAAK-IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFPKF 107 (299)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCCCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcccC
Confidence 344555555 566789999999999999999987 358999999 77776544 68999999987 55444
Q ss_pred CEEEeccccccCChhHHHHHH---------------HHHHhhCCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKIL---------------KNCYDALPK 265 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL---------------~~~~~aL~p 265 (345)
|+|+++ .-++|+.+...++| ..+.+.+++
T Consensus 108 D~Vv~n-~py~~~~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~ 151 (299)
T 2h1r_A 108 DVCTAN-IPYKISSPLIFKLISHRPLFKCAVLMFQKEFAERMLAN 151 (299)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCC
T ss_pred CEEEEc-CCcccccHHHHHHHhcCCccceeeehHHHHHHHHHhcC
Confidence 998875 45567777766777 335677877
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.53 E-value=2e-07 Score=89.20 Aligned_cols=106 Identities=13% Similarity=0.174 Sum_probs=79.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CCC-C-
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VPS-G- 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p~-~- 235 (345)
+...++ .....+|||+|||+|..+..+++..|+.+++++|+ +..++.++ +++++.+|+.+ + ++. .
T Consensus 238 ~~~~l~-~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~f 316 (429)
T 1sqg_A 238 CMTWLA-PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQF 316 (429)
T ss_dssp HHHHHC-CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCE
T ss_pred HHHHcC-CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCC
Confidence 344444 45667999999999999999999999889999998 66666544 57899999987 3 343 3
Q ss_pred CEEEe------ccccccCCh-------hHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFT------KSVLLNWSD-------EQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~------~~vlh~~~d-------~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++ ..++++.++ ++. ..+|+++.+.|+| ||++++. +...
T Consensus 317 D~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~Lkp---GG~lvys-tcs~ 377 (429)
T 1sqg_A 317 DRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYA-TCSV 377 (429)
T ss_dssp EEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEE-ESCC
T ss_pred CEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE-ECCC
Confidence 99986 244544433 222 4889999999999 9999988 6443
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.1e-07 Score=78.40 Aligned_cols=84 Identities=11% Similarity=-0.018 Sum_probs=68.2
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~ 247 (345)
....+|||+|||+|.++..+++..+ .+++++|+ +.+++.++ +++++.+|+.+ ++.. |+|++.-.+|.+
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~-~~~~~D~v~~~~p~~~~ 125 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGA-KEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSE-FNSRVDIVIMNPPFGSQ 125 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGG-CCCCCSEEEECCCCSSS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHH-cCCCCCEEEEcCCCccc
Confidence 3457999999999999999998743 47999999 77877665 58899999887 3434 999999999888
Q ss_pred ChhHHHHHHHHHHhhC
Q 044482 248 SDEQCLKILKNCYDAL 263 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL 263 (345)
......++|+++.+.+
T Consensus 126 ~~~~~~~~l~~~~~~l 141 (207)
T 1wy7_A 126 RKHADRPFLLKAFEIS 141 (207)
T ss_dssp STTTTHHHHHHHHHHC
T ss_pred cCCchHHHHHHHHHhc
Confidence 7655567889888886
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.49 E-value=1.5e-06 Score=80.58 Aligned_cols=148 Identities=18% Similarity=0.134 Sum_probs=92.4
Q ss_pred cccceEEecCCccHHHHHHHHH----------------CCCCeEEEeehhhH--------hhhC----C--CceEEeccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNT----------------YPQITGINFDLPYV--------IKNA----P--CVEHVEGDM 228 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~----------------~p~~~~~~~Dlp~~--------i~~a----~--ri~~~~gd~ 228 (345)
+.-+|+|+||++|..+..+... .|+++++.-|+|.- +..- + -+.-++|.|
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 4568999999999766554433 57788999999741 2210 1 244567889
Q ss_pred Cc-CCCCC--CEEEeccccccCCh-------------------------------hHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 229 FV-NVPSG--QAIFTKSVLLNWSD-------------------------------EQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 229 ~~-~~p~~--D~i~~~~vlh~~~d-------------------------------~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
.. .+|++ |+++.++.||.+++ .+...+|+..++.|+| ||++++
T Consensus 131 y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~p---GG~mvl 207 (359)
T 1m6e_X 131 YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMVL 207 (359)
T ss_dssp SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEEE
T ss_pred hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CceEEE
Confidence 88 78865 99999999997654 1334669999999999 999988
Q ss_pred EeccCCCCCCC-Cch----h-hhhhhccchhhhhh---------cCCCccCCHHHHHHHHHHCC-CCceEEE
Q 044482 275 RSKRGLPESPE-FSS----I-NRNILTLDIVMYDL---------FPQAKGRTAGEFKALAMAAG-FGTIKVI 330 (345)
Q Consensus 275 ~~d~~~~~~~~-~~~----~-~~~~~~~d~~~~~~---------~~~~~~rt~~e~~~ll~~aG-f~~~~~~ 330 (345)
. -.-.++... ... . .....+.|+..--. ..--..++.+|++++++++| |++.+..
T Consensus 208 ~-~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 208 T-ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp E-EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred E-EecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCCCccCCCHHHHHHHHHHcCCceEEEEE
Confidence 7 443332210 000 0 00001111100000 00113578999999999996 4776653
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.1e-07 Score=89.35 Aligned_cols=99 Identities=8% Similarity=0.044 Sum_probs=75.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CCCC-CEEEe--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VPSG-QAIFT-- 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p~~-D~i~~-- 240 (345)
.....+|||+|||+|..+..+++..++ .+++++|+ +.+++.++ .++++.+|+.+ + .+.. |+|++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~v~~~~~Da~~l~~~~~~~FD~Il~D~ 178 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVTQAPPRALAEAFGTYFHRVLLDA 178 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCCCEEECSCHHHHHHHHCSCEEEEEEEC
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCeEEEEECCHHHhhhhccccCCEEEECC
Confidence 456689999999999999999999875 78999999 77777665 37888899876 2 2333 99996
Q ss_pred -----------ccccccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 241 -----------KSVLLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 241 -----------~~vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
..+...|+.+.. .++|+++.+.|+| ||+|+.. ...
T Consensus 179 PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~Lvys-TCs 231 (464)
T 3m6w_A 179 PCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGP---GGVLVYS-TCT 231 (464)
T ss_dssp CCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEE---EEEEEEE-ESC
T ss_pred CcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-ecc
Confidence 222334544433 6799999999999 9999886 443
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=1.7e-07 Score=84.05 Aligned_cols=117 Identities=13% Similarity=0.048 Sum_probs=84.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~--D~i~~~~v 243 (345)
+....+|||+|||+|.++..++++. ..+++.+|+ |..++.++ +++++.+|..+-.+++ |.|++...
T Consensus 123 ~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~p 201 (278)
T 3k6r_A 123 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 201 (278)
T ss_dssp CCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECCC
Confidence 3466899999999999999998774 568999999 77766554 6899999998744433 98887633
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
- .+...|..+.+.|+| ||.|.+. +.+..+.. .....+.++++.++.|
T Consensus 202 ~------~~~~~l~~a~~~lk~---gG~ih~~-~~~~e~~~-----------------------~~~~~e~i~~~~~~~g 248 (278)
T 3k6r_A 202 V------RTHEFIPKALSIAKD---GAIIHYH-NTVPEKLM-----------------------PREPFETFKRITKEYG 248 (278)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEE-EEEEGGGT-----------------------TTTTHHHHHHHHHHTT
T ss_pred C------cHHHHHHHHHHHcCC---CCEEEEE-eeeccccc-----------------------chhHHHHHHHHHHHcC
Confidence 1 123578888899999 9988777 55422110 1123566788899999
Q ss_pred CCce
Q 044482 324 FGTI 327 (345)
Q Consensus 324 f~~~ 327 (345)
+++.
T Consensus 249 ~~v~ 252 (278)
T 3k6r_A 249 YDVE 252 (278)
T ss_dssp CEEE
T ss_pred CcEE
Confidence 8753
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.44 E-value=6.5e-07 Score=86.58 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=75.0
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEec--
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTK-- 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~-- 241 (345)
...+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++ +++++.+|+.+ + .+.. |+|++.
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 567999999999999999999875 578999999 77776554 68899999887 3 3333 999872
Q ss_pred ----cc-------cccCChhH-------HHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 ----SV-------LLNWSDEQ-------CLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ----~v-------lh~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.+ .++|+.++ ..++|+++.+.|+| ||+|++. ....
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~Lkp---GG~Lvys-Tcs~ 249 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRP---GGTLVYS-TCTL 249 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE-ESCC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEe-cccC
Confidence 22 23455443 24789999999999 9999887 5543
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-07 Score=85.59 Aligned_cols=107 Identities=7% Similarity=-0.024 Sum_probs=76.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--------------------------------------ITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 208 (345)
+..++.... |....+|||.+||+|.+++..+....+ .++++
T Consensus 190 Aa~ll~l~~-~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 268 (393)
T 3k0b_A 190 AAALVLLTS-WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIG 268 (393)
T ss_dssp HHHHHHHSC-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEE
Confidence 344556555 877889999999999999988875433 56999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecccccc-C-ChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN-W-SDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~-~-~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ +++++.+|+++ +.+.. |+|+++--.+. . ..++...+.+.+.+.|++ -+|++++
T Consensus 269 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPYg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 347 (393)
T 3k0b_A 269 GDIDARLIEIAKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKR-MPTWSVY 347 (393)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-CTTCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCCccccCCchhHHHHHHHHHHHHhc-CCCCEEE
Confidence 999 88888766 58999999998 44444 99998833321 1 224455667766666654 2388888
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 348 ii 349 (393)
T 3k0b_A 348 VL 349 (393)
T ss_dssp EE
T ss_pred EE
Confidence 87
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-07 Score=83.68 Aligned_cols=147 Identities=18% Similarity=0.165 Sum_probs=92.9
Q ss_pred ccceEEecCCccHHHHHHHHH-----------------CCCCeEEEeehhh--------Hhhh---------C---C--C
Q 044482 180 LKKLVDVASCLGANMSLIVNT-----------------YPQITGINFDLPY--------VIKN---------A---P--C 220 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~-----------------~p~~~~~~~Dlp~--------~i~~---------a---~--r 220 (345)
.-+|+|+||++|..+..++.. .|+++++.-|+|. .++. . . =
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 578999999999999888766 5788999999981 1111 1 1 2
Q ss_pred ceEEeccCCc-CCCCC--CEEEeccccccCChh-------------------------HH------------HHHHHHHH
Q 044482 221 VEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDE-------------------------QC------------LKILKNCY 260 (345)
Q Consensus 221 i~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~-------------------------~~------------~~iL~~~~ 260 (345)
+.-++|.|+. .+|++ |+++++++||.+++. .+ ..+|+..+
T Consensus 133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra 212 (384)
T 2efj_A 133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS 212 (384)
T ss_dssp EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788888 78865 999999999976532 12 23488889
Q ss_pred hhCCCCCCCcEEEEEeccCCCCCC-CCchh-hhhhhccchhh--------hhhc-CCCccCCHHHHHHHHHHCC-CCceE
Q 044482 261 DALPKSRKHGRTQLRSKRGLPESP-EFSSI-NRNILTLDIVM--------YDLF-PQAKGRTAGEFKALAMAAG-FGTIK 328 (345)
Q Consensus 261 ~aL~p~~~gG~lli~~d~~~~~~~-~~~~~-~~~~~~~d~~~--------~~~~-~~~~~rt~~e~~~ll~~aG-f~~~~ 328 (345)
+.|+| ||++++. -.-.++.. .+... .....+.++.. +..+ .--..++.+|++++++++| |++.+
T Consensus 213 ~eL~p---GG~mvl~-~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~~ 288 (384)
T 2efj_A 213 EELIS---RGRMLLT-FICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEILY 288 (384)
T ss_dssp HHEEE---EEEEEEE-EECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEEE
T ss_pred HHhcc---CCeEEEE-EecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEEE
Confidence 99999 9999888 44333220 11100 00111111110 0000 0123479999999999985 78776
Q ss_pred EE
Q 044482 329 VI 330 (345)
Q Consensus 329 ~~ 330 (345)
+.
T Consensus 289 le 290 (384)
T 2efj_A 289 LE 290 (384)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=98.41 E-value=2.2e-06 Score=78.94 Aligned_cols=142 Identities=9% Similarity=0.016 Sum_probs=101.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhC------------------------------CCceEEeccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNA------------------------------PCVEHVEGDM 228 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a------------------------------~ri~~~~gd~ 228 (345)
+...||.+|||.....-.+...+|+++++-+|+|++++.. .+..+++.|+
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL 176 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL 176 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCCHHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence 4578999999999999999999899999999999886532 2578999999
Q ss_pred Cc-CC--------C--CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc
Q 044482 229 FV-NV--------P--SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL 296 (345)
Q Consensus 229 ~~-~~--------p--~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~ 296 (345)
.+ .+ + +. .++++-.+|++++.+++.++|+.+.+.. | +|.+++. |.+.+..+...........+
T Consensus 177 ~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL~~~~~~~ll~~ia~~~-~---~~~~v~~-e~i~~~~~~~~fg~~m~~~l 251 (334)
T 1rjd_A 177 NDITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKF-S---HGLWISY-DPIGGSQPNDRFGAIMQSNL 251 (334)
T ss_dssp TCHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHC-S---SEEEEEE-EECCCCSTTCCHHHHHHHHH
T ss_pred CCcHHHHHHHHhcCCCCCCEEEEEcchhhCCCHHHHHHHHHHHHhhC-C---CcEEEEE-eccCCCCCcchHHHHHHHHh
Confidence 87 32 1 22 6888889999999999999999999987 6 7888889 99877332221110000000
Q ss_pred ch-hhhhhcCCCccCCHHHHHHHHHHCCCC
Q 044482 297 DI-VMYDLFPQAKGRTAGEFKALAMAAGFG 325 (345)
Q Consensus 297 d~-~~~~~~~~~~~rt~~e~~~ll~~aGf~ 325 (345)
.- .-..+.......+.++..+.|.++||+
T Consensus 252 ~~~rg~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 252 KESRNLEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp HHHHCCCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred hcccCCcccccccCCCHHHHHHHHHHCCCC
Confidence 00 000011012346889999999999997
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=82.03 Aligned_cols=107 Identities=10% Similarity=-0.002 Sum_probs=79.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--------------------------------------CeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--------------------------------------ITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--------------------------------------~~~~~ 208 (345)
+..++.... |.....|+|.+||+|.+++..+....+ .++++
T Consensus 183 Aaall~l~~-~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~G 261 (384)
T 3ldg_A 183 AAAIILLSN-WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISG 261 (384)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEE
T ss_pred HHHHHHHhC-CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEE
Confidence 344555555 777889999999999999988865433 56999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccc-cC-ChhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLL-NW-SDEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh-~~-~d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ +++++.+|+++ +.+.. |+|+++--.+ -+ +.++...+.+++.+.|++ -+|+++.
T Consensus 262 vDid~~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 340 (384)
T 3ldg_A 262 FDFDGRMVEIARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYGERLLDDKAVDILYNEMGETFAP-LKTWSQF 340 (384)
T ss_dssp EESCHHHHHHHHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCTTTTSCHHHHHHHHHHHHHHHTT-CTTSEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchhhccCCHHHHHHHHHHHHHHHhh-CCCcEEE
Confidence 999 88887766 58999999998 44444 9999873332 12 345667788888888775 3488888
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 341 ii 342 (384)
T 3ldg_A 341 IL 342 (384)
T ss_dssp EE
T ss_pred EE
Confidence 88
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=6.6e-07 Score=81.02 Aligned_cols=87 Identities=11% Similarity=0.137 Sum_probs=64.5
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-- 235 (345)
...+++..+ .....+|||||||+|.++..++++ ..+++++|+ +.+++.++ +++++.+|+.+ ++++.
T Consensus 39 ~~~Iv~~l~-~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~~~~~~f 115 (295)
T 3gru_A 39 VNKAVESAN-LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVDLNKLDF 115 (295)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCCcccCCc
Confidence 345666666 666789999999999999999998 468999998 77777655 78999999998 77653
Q ss_pred CEEEeccccccCChhHHHHHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
|+|+.+ .-++++.+-..++|+
T Consensus 116 D~Iv~N-lPy~is~pil~~lL~ 136 (295)
T 3gru_A 116 NKVVAN-LPYQISSPITFKLIK 136 (295)
T ss_dssp SEEEEE-CCGGGHHHHHHHHHH
T ss_pred cEEEEe-CcccccHHHHHHHHh
Confidence 888855 334455544344443
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.1e-06 Score=78.66 Aligned_cols=87 Identities=13% Similarity=0.087 Sum_probs=66.3
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------CceEEeccCCc-CCCC--CCE
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------ri~~~~gd~~~-~~p~--~D~ 237 (345)
..+++..+ .... +|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++ ...
T Consensus 37 ~~Iv~~~~-~~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~~~~~v~vi~~D~l~~~~~~~~~~~ 112 (271)
T 3fut_A 37 RRIVEAAR-PFTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETLSGLPVRLVFQDALLYPWEEVPQGS 112 (271)
T ss_dssp HHHHHHHC-CCCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHTTTSSEEEEESCGGGSCGGGSCTTE
T ss_pred HHHHHhcC-CCCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcCCCCEEEEECChhhCChhhccCcc
Confidence 35666666 5666 99999999999999999985 57899998 77777654 79999999998 6663 334
Q ss_pred EEeccccccCChhHHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILKN 258 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~ 258 (345)
.++.|.-++.+.+-..++|..
T Consensus 113 ~iv~NlPy~iss~il~~ll~~ 133 (271)
T 3fut_A 113 LLVANLPYHIATPLVTRLLKT 133 (271)
T ss_dssp EEEEEECSSCCHHHHHHHHHH
T ss_pred EEEecCcccccHHHHHHHhcC
Confidence 566677777787766666654
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.33 E-value=9.2e-07 Score=78.20 Aligned_cols=89 Identities=17% Similarity=0.138 Sum_probs=66.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCC--CCE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~--~D~ 237 (345)
...+++..+ .....+|||||||+|.++..++++ +..+++++|+ +.+++.++ +++++.+|+++ ++++ ++.
T Consensus 20 ~~~iv~~~~-~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~ 97 (249)
T 3ftd_A 20 LKKIAEELN-IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSIGDERLEVINEDASKFPFCSLGKEL 97 (249)
T ss_dssp HHHHHHHTT-CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTSCCTTEEEECSCTTTCCGGGSCSSE
T ss_pred HHHHHHhcC-CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhccCCCeEEEEcchhhCChhHccCCc
Confidence 345666666 666789999999999999999987 4578999999 77777654 68999999998 6663 256
Q ss_pred EEeccccccCChhHHHHHHH
Q 044482 238 IFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~ 257 (345)
+++.+.-++.+.+-..++|+
T Consensus 98 ~vv~NlPy~i~~~il~~ll~ 117 (249)
T 3ftd_A 98 KVVGNLPYNVASLIIENTVY 117 (249)
T ss_dssp EEEEECCTTTHHHHHHHHHH
T ss_pred EEEEECchhccHHHHHHHHh
Confidence 67777766665554444443
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-07 Score=86.70 Aligned_cols=100 Identities=13% Similarity=0.133 Sum_probs=73.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC---------CceEEeccCCc-C--CCCC-CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP---------CVEHVEGDMFV-N--VPSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~--~p~~-D~i~~~ 241 (345)
.....+|||+|||+|..+..+++..++ .+++.+|+ +..++.++ ++.++.+|..+ + .+.. |+|++.
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456689999999999999999998654 78999999 77766554 68888999876 2 3333 999873
Q ss_pred c------ccc-------cCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 242 S------VLL-------NWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 242 ~------vlh-------~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
- ++. .|+.+.. .++|+++.+.|+| ||+|+.. ....
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~Lkp---GG~LvYs-TCs~ 237 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKN---KGQLIYS-TCTF 237 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEE---EEEEEEE-ESCC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE-Eeec
Confidence 2 222 2332221 3789999999999 9998887 5433
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.4e-06 Score=81.90 Aligned_cols=107 Identities=17% Similarity=0.075 Sum_probs=78.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC--------------------------------------CCeEEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP--------------------------------------QITGIN 208 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p--------------------------------------~~~~~~ 208 (345)
+..++.... |....+|||.+||+|.+++.++.... ..++++
T Consensus 184 Aa~ll~~~~-~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~G 262 (385)
T 3ldu_A 184 AAGLIYLTP-WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYG 262 (385)
T ss_dssp HHHHHHTSC-CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEE
T ss_pred HHHHHHhhC-CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEE
Confidence 344556555 87788999999999999999887632 257999
Q ss_pred eeh-hhHhhhCC----------CceEEeccCCc-CCCCC-CEEEecccccc-CC-hhHHHHHHHHHHhhCCCCCCCcEEE
Q 044482 209 FDL-PYVIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLN-WS-DEQCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 209 ~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~-~~-d~~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
+|+ +.+++.|+ ++++..+|+++ +.+.. |+|+++--... +. .++...+.+++.+.|++ -+|++++
T Consensus 263 vDid~~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~-~~g~~~~ 341 (385)
T 3ldu_A 263 YDIDEESIDIARENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK-LKNWSYY 341 (385)
T ss_dssp EESCHHHHHHHHHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT-SBSCEEE
T ss_pred EECCHHHHHHHHHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh-CCCCEEE
Confidence 999 88888776 58999999998 44444 99999644322 22 34556777777777765 3377887
Q ss_pred EE
Q 044482 274 LR 275 (345)
Q Consensus 274 i~ 275 (345)
|+
T Consensus 342 ii 343 (385)
T 3ldu_A 342 LI 343 (385)
T ss_dssp EE
T ss_pred EE
Confidence 77
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.30 E-value=4.3e-07 Score=85.89 Aligned_cols=93 Identities=12% Similarity=0.093 Sum_probs=71.1
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC------CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV------PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~------p~~-D~i~~ 240 (345)
...+|||+|||+|.++..+++. +..+++++|+ +.+++.++ +++++.+|+++.. ... |+|++
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~ 295 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVL 295 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCCCCCEEEE
Confidence 5579999999999999999986 4458999999 77777655 5889999998732 223 99998
Q ss_pred ccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.--....+. .....+++++.+.|+| ||.+++.
T Consensus 296 dpP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~lv~~ 334 (396)
T 2as0_A 296 DPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTC 334 (396)
T ss_dssp CCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 532222221 3456789999999999 9988887
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=4e-07 Score=85.69 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=71.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCC------CCC-CEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNV------PSG-QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~------p~~-D~i~~~ 241 (345)
...+|||+|||+|.++..+++. ..+++++|+ +.+++.++ +++++.+|+++.. +.. |+|++.
T Consensus 209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~d 286 (382)
T 1wxx_A 209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 286 (382)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEEC
Confidence 5579999999999999999998 568999999 78887666 4899999998732 223 999984
Q ss_pred cccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
--....+. +....+++++.+.|+| ||.+++.
T Consensus 287 pP~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~l~~~ 324 (382)
T 1wxx_A 287 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATA 324 (382)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCCCChhHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 32222111 3446799999999999 9998888
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.23 E-value=7.7e-07 Score=85.44 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=75.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-------------CCCeEEEeeh-hhHhhhCC-----------Cce
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-------------PQITGINFDL-PYVIKNAP-----------CVE 222 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~-----------ri~ 222 (345)
..+++.+. .....+|+|.|||+|.++..+++.. +..+++++|+ |.+++.|+ +++
T Consensus 161 ~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~~~~ 239 (445)
T 2okc_A 161 QAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRSP 239 (445)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCCS
T ss_pred HHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcCCCC
Confidence 34445444 3455799999999999999988763 4567999999 77776654 357
Q ss_pred EEeccCCc-CCCCC-CEEEeccccccCChh---------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 223 HVEGDMFV-NVPSG-QAIFTKSVLLNWSDE---------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 223 ~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~---------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+..+|.+. +.... |+|+++-.++..... .-..+++++.+.|+| ||++.++
T Consensus 240 i~~gD~l~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~---gG~~a~V 306 (445)
T 2okc_A 240 IVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVV 306 (445)
T ss_dssp EEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred EeeCCCCCCcccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhcc---CCEEEEE
Confidence 89999988 33334 999998665542211 124789999999999 9999888
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.2e-06 Score=77.51 Aligned_cols=87 Identities=11% Similarity=0.044 Sum_probs=61.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC---
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS--- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~--- 234 (345)
...+++.++ .....+|||||||+|.++. +. +.++.+++++|+ +.+++.++ +++++.+|+.+ ++++
T Consensus 10 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~~~~~~~ 86 (252)
T 1qyr_A 10 IDSIVSAIN-PQKGQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELAE 86 (252)
T ss_dssp HHHHHHHHC-CCTTCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHHH
T ss_pred HHHHHHhcC-CCCcCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCCHHHhhc
Confidence 445666666 6667899999999999999 54 555445999998 78877554 68999999988 5542
Q ss_pred ---CCEEEeccccccCChhHHHHHH
Q 044482 235 ---GQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 235 ---~D~i~~~~vlh~~~d~~~~~iL 256 (345)
.+.+++++.-++.+.+...++|
T Consensus 87 ~~~~~~~vvsNlPY~i~~~il~~ll 111 (252)
T 1qyr_A 87 KMGQPLRVFGNLPYNISTPLMFHLF 111 (252)
T ss_dssp HHTSCEEEEEECCTTTHHHHHHHHH
T ss_pred ccCCceEEEECCCCCccHHHHHHHH
Confidence 2456666666666555444444
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=9.2e-07 Score=81.73 Aligned_cols=86 Identities=13% Similarity=0.076 Sum_probs=67.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCCCEEEecccccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSGQAIFTKSVLLN 246 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~D~i~~~~vlh~ 246 (345)
....+|||+|||+|.++.. ++ +..+++++|+ |.+++.++ +++++.+|+++.....|+|++.-.-
T Consensus 194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~~~fD~Vi~dpP~-- 268 (336)
T 2yx1_A 194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVDVKGNRVIMNLPK-- 268 (336)
T ss_dssp CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCCCCEEEEEECCTT--
T ss_pred CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhcCCCcEEEECCcH--
Confidence 3557999999999999999 76 4678999999 77777654 5899999998844223999985211
Q ss_pred CChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 247 WSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 247 ~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+++.+.+.|+| ||.+++.
T Consensus 269 ----~~~~~l~~~~~~L~~---gG~l~~~ 290 (336)
T 2yx1_A 269 ----FAHKFIDKALDIVEE---GGVIHYY 290 (336)
T ss_dssp ----TGGGGHHHHHHHEEE---EEEEEEE
T ss_pred ----hHHHHHHHHHHHcCC---CCEEEEE
Confidence 123789999999999 9988888
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.5e-06 Score=81.84 Aligned_cols=92 Identities=12% Similarity=0.111 Sum_probs=68.8
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCC---CCC-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNV---PSG-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~---p~~-D~i~~~~vlh 245 (345)
...+|||+|||+|.++..+++.. .+++++|+ +.+++.++ ..++..+|+++.+ +.. |+|++.--..
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~dpP~f 291 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEGPFHHVLLDPPTL 291 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCCCEEEEEECCCCC
T ss_pred CCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcCCCCEEEECCCcC
Confidence 36799999999999999999874 44999999 88888776 2357789998732 233 9998854321
Q ss_pred cCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSD-------EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+. ..-.++++++.+.|+| ||.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~ll~~a~~~Lkp---GG~Lv~~ 325 (393)
T 4dmg_A 292 VKRPEELPAMKRHLVDLVREALRLLAE---EGFLWLS 325 (393)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhcCC---CCEEEEE
Confidence 1111 1235789999999999 9999877
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.9e-07 Score=79.26 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=52.8
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCC--CeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ--ITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVP 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~--~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p 233 (345)
..+++.++ .....+|||||||+|.++..++++.+. .+++++|+ +.+++.++ +++++.+|+++ +++
T Consensus 32 ~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~~~~v~~i~~D~~~~~~~ 105 (279)
T 3uzu_A 32 DAIVAAIR-PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRFGELLELHAGDALTFDFG 105 (279)
T ss_dssp HHHHHHHC-CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHHGGGEEEEESCGGGCCGG
T ss_pred HHHHHhcC-CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhcCCCcEEEECChhcCChh
Confidence 34566666 666789999999999999999998764 56999998 88887665 78999999988 555
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=4.3e-06 Score=79.96 Aligned_cols=95 Identities=9% Similarity=0.169 Sum_probs=66.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP----- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p----- 233 (345)
.+++.++ .....+|||+|||+|.++..+++. ..+++++|. +.+++.|+ +++|+.+|+.+.++
T Consensus 277 ~~~~~l~-~~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~ 353 (433)
T 1uwv_A 277 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 353 (433)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-CCCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhh
Confidence 4445554 555679999999999999999987 568999999 78887665 68999999987332
Q ss_pred C-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 S-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. . |+|++.--- ..+..+++.+.+ ++| ++.+++.
T Consensus 354 ~~~fD~Vv~dPPr-----~g~~~~~~~l~~-~~p---~~ivyvs 388 (433)
T 1uwv_A 354 KNGFDKVLLDPAR-----AGAAGVMQQIIK-LEP---IRIVYVS 388 (433)
T ss_dssp TTCCSEEEECCCT-----TCCHHHHHHHHH-HCC---SEEEEEE
T ss_pred cCCCCEEEECCCC-----ccHHHHHHHHHh-cCC---CeEEEEE
Confidence 2 2 999874222 112245555543 688 6655555
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-06 Score=76.80 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=59.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC---
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS--- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~--- 234 (345)
...+++..+ .....+|||||||+|.++..++++. .+++++|+ +.+++.++ +++++.+|+++ ++++
T Consensus 18 ~~~iv~~~~-~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~~~~~~~ 94 (255)
T 3tqs_A 18 LQKIVSAIH-PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFDFSSVKT 94 (255)
T ss_dssp HHHHHHHHC-CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCCGGGSCC
T ss_pred HHHHHHhcC-CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCCHHHhcc
Confidence 345666666 6667899999999999999999875 58999998 77877654 78999999998 5542
Q ss_pred -CCEEEeccccccCChh
Q 044482 235 -GQAIFTKSVLLNWSDE 250 (345)
Q Consensus 235 -~D~i~~~~vlh~~~d~ 250 (345)
+...++.|.=++.+.+
T Consensus 95 ~~~~~vv~NlPY~is~~ 111 (255)
T 3tqs_A 95 DKPLRVVGNLPYNISTP 111 (255)
T ss_dssp SSCEEEEEECCHHHHHH
T ss_pred CCCeEEEecCCcccCHH
Confidence 2333444444444443
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=3.3e-06 Score=83.69 Aligned_cols=122 Identities=13% Similarity=0.062 Sum_probs=81.2
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhcc---CcccccceEEecCCccHHHH---HHHHHC-CCCeEEEeehhh
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYK---GFKELKKLVDVASCLGANMS---LIVNTY-PQITGINFDLPY 213 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~---~~~~~~~vlDiGgG~G~~~~---~l~~~~-p~~~~~~~Dlp~ 213 (345)
.|+.+++||-..+.|.+|+.. .+.+... .-.....|+|||||+|-+.. ..+++. -+++++.++-.+
T Consensus 323 tYevFEkD~vKy~~Ye~AI~~-------Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp 395 (637)
T 4gqb_A 323 TYEVFEKDPIKYSQYQQAIYK-------CLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP 395 (637)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH-------HHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH
T ss_pred hhhhhcCChhhHHHHHHHHHH-------HHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 367777888777778777643 1222211 02234579999999998843 333332 234778898855
Q ss_pred HhhhCC----------CceEEeccCCc-CCCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEE
Q 044482 214 VIKNAP----------CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRT 272 (345)
Q Consensus 214 ~i~~a~----------ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~l 272 (345)
+...++ +|+++.||+.+ .+|+. |+|+.-+.=...-.|-...+|-...+-||| ||.+
T Consensus 396 ~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVSEwMG~fLl~E~mlevL~Ardr~LKP---gGim 463 (637)
T 4gqb_A 396 NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVSELLGSFADNELSPECLDGAQHFLKD---DGVS 463 (637)
T ss_dssp HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEECCCCBTTBGGGCHHHHHHHHGGGEEE---EEEE
T ss_pred HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEEEcCcccccccCCHHHHHHHHHhcCC---CcEE
Confidence 554443 89999999999 88865 999876554333444455677777889999 8854
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=2.2e-06 Score=80.65 Aligned_cols=94 Identities=13% Similarity=0.026 Sum_probs=69.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC------CC-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP------SG-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p------~~-D~i 238 (345)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.|+ +++++.+|+++.++ .. |+|
T Consensus 211 ~~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~I 289 (385)
T 2b78_A 211 AAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDII 289 (385)
T ss_dssp TBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEE
Confidence 345799999999999999999863 237999999 77777654 47899999987322 13 999
Q ss_pred Eecccc-----ccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVL-----LNWSD--EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vl-----h~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.--. ++..+ +...++++.+.+.|+| ||.+++.
T Consensus 290 i~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~p---gG~l~~~ 330 (385)
T 2b78_A 290 IIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE---NGLIIAS 330 (385)
T ss_dssp EECCCCC-----CCCCHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 984322 12222 2335688999999999 9988877
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=6.8e-06 Score=78.25 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=64.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCC-CEEEeccccccCC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSG-QAIFTKSVLLNWS 248 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~ 248 (345)
...+|||+|||+|.++..+++. ..+++++|. +.+++.|+ .++|+.+|+.+..+.. |+|++.---....
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~ngl~v~~~~~d~~~~~~~~fD~Vv~dPPr~g~~ 367 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEINNVDAEFEVASDREVSVKGFDTVIVDPPRAGLH 367 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHHTCCEEEEECCTTTCCCTTCSEEEECCCTTCSC
T ss_pred CCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHcCCcEEEEECChHHcCccCCCEEEEcCCccchH
Confidence 4578999999999999999986 358999999 88888776 2789999998854434 9999853322221
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+++.++ .|+| +|.+++.
T Consensus 368 ----~~~~~~l~-~l~p---~givyvs 386 (425)
T 2jjq_A 368 ----PRLVKRLN-REKP---GVIVYVS 386 (425)
T ss_dssp ----HHHHHHHH-HHCC---SEEEEEE
T ss_pred ----HHHHHHHH-hcCC---CcEEEEE
Confidence 13455554 4899 8877777
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.04 E-value=2.6e-06 Score=80.45 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=69.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC------CC-CEEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP------SG-QAIF 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p------~~-D~i~ 239 (345)
...+|||+|||+|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+++..+ .. |+|+
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii 298 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEE
Confidence 45799999999999999999874 458999999 77776544 46799999987322 23 9998
Q ss_pred ecccc--------ccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVL--------LNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vl--------h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.--. ++.. .....++.++.+.|+| ||.+++.
T Consensus 299 ~dpP~~~~~~~~~~~~~-~~~~~~l~~~~~~Lkp---gG~l~~~ 338 (396)
T 3c0k_A 299 MDPPKFVENKSQLMGAC-RGYKDINMLAIQLLNE---GGILLTF 338 (396)
T ss_dssp ECCSSTTTCSSSSSCCC-THHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ECCCCCCCChhHHHHHH-HHHHHHHHHHHHhcCC---CcEEEEE
Confidence 85321 1111 3456899999999999 9988887
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=5.9e-06 Score=74.97 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=57.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-C--CC--
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-N--VP-- 233 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~--~p-- 233 (345)
..+++.+. .....+|||+|||+|..+..+++++|+.+++++|. |.+++.|+ |++++.+|+.+ + ++
T Consensus 16 ~e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~ 94 (301)
T 1m6y_A 16 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 94 (301)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhc
Confidence 34555555 55668999999999999999999999889999999 88887665 68999999865 2 11
Q ss_pred --CC-CEEEecc
Q 044482 234 --SG-QAIFTKS 242 (345)
Q Consensus 234 --~~-D~i~~~~ 242 (345)
.. |+|++.-
T Consensus 95 g~~~~D~Vl~D~ 106 (301)
T 1m6y_A 95 GIEKVDGILMDL 106 (301)
T ss_dssp TCSCEEEEEEEC
T ss_pred CCCCCCEEEEcC
Confidence 23 8887643
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=71.00 Aligned_cols=96 Identities=14% Similarity=0.199 Sum_probs=65.8
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-h-------hHhhhCC----------CceEEeccCCcC---CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-P-------YVIKNAP----------CVEHVEGDMFVN---VP-- 233 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p-------~~i~~a~----------ri~~~~gd~~~~---~p-- 233 (345)
.....+|||+|||+|..+..+++. ..+++++|+ | .+++.++ |++++.+|+.+. ++
T Consensus 81 ~~~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~ 158 (258)
T 2r6z_A 81 HTAHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT 158 (258)
T ss_dssp GGGCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred cCCcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence 445579999999999999999986 468999999 7 6666554 599999998762 33
Q ss_pred -CC-CEEEeccccccCCh------------------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 234 -SG-QAIFTKSVLLNWSD------------------EQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 234 -~~-D~i~~~~vlh~~~d------------------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.. |+|++.-.+++-.. .+...+++.+.+..+. +++|. ....
T Consensus 159 ~~~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~-----~vvvk-~p~~ 219 (258)
T 2r6z_A 159 QGKPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK-----RVVVK-RPRL 219 (258)
T ss_dssp HCCCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS-----EEEEE-EETT
T ss_pred CCCccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc-----EEEEE-cCCC
Confidence 33 99999765544221 1234556666666544 67776 5543
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00028 Score=64.76 Aligned_cols=185 Identities=9% Similarity=0.059 Sum_probs=116.6
Q ss_pred cchhhhhccCc--hhHHHHHHHHHHhhHHHHHHHHHhc-cCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeehhhH
Q 044482 139 IMDCIYLTMLP--MMLNLFNQSMQNHTAIVMKKILEIY-KGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDLPYV 214 (345)
Q Consensus 139 ~~~~~~~~~~~--~~~~~f~~~m~~~~~~~~~~i~~~~-~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dlp~~ 214 (345)
.+++.++-..+ ......++++...+... +.+++.+ ....+...||-+|||.=...-.+... .++++++-+|+|++
T Consensus 48 Dpf~~~Fv~~~~~rr~P~inrG~~~Rt~~i-D~~v~~fl~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~v 126 (334)
T 3iei_A 48 DPYIQHFVRLSKERKAPEINRGYFARVHGV-SQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMI 126 (334)
T ss_dssp CSSGGGTSCCCCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHTTTCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEECHHH
T ss_pred CHHHHHHcCcccCCCCchHHHHHHHHHHHH-HHHHHHHHHhCCCCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCcHHH
Confidence 45666654322 33345555555444432 3333322 20123568999999999999998875 36789999999988
Q ss_pred hhh--------------------------------CCCceEEeccCCc--C---------CC-CC-CEEEeccccccCCh
Q 044482 215 IKN--------------------------------APCVEHVEGDMFV--N---------VP-SG-QAIFTKSVLLNWSD 249 (345)
Q Consensus 215 i~~--------------------------------a~ri~~~~gd~~~--~---------~p-~~-D~i~~~~vlh~~~d 249 (345)
++. ..+..+++.|+.+ . +. +. -++++-.+|.+++.
T Consensus 127 i~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~ 206 (334)
T 3iei_A 127 VTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTP 206 (334)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCH
T ss_pred HHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCCCH
Confidence 652 1267889999876 1 22 22 57777899999999
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
+++..+|+.+.+..++ |.+++. |.+.++++-..............+..+ ....+.++..+++.++||+.+++
T Consensus 207 ~~~~~ll~~ia~~f~~----~~~i~y-E~i~p~d~fg~~M~~~l~~~g~pl~sl---~~y~t~~~~~~r~~~~Gw~~~~~ 278 (334)
T 3iei_A 207 EQSANLLKWAANSFER----AMFINY-EQVNMGDRFGQIMIENLRRRQCDLAGV---ETCKSLESQKERLLSNGWETASA 278 (334)
T ss_dssp HHHHHHHHHHHHHCSS----EEEEEE-EECCTTSHHHHHHHHHHHTTTCCCTTG---GGGGCHHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHHhCCC----ceEEEE-eccCCCCHHHHHHHHHHHHhCCCCccc---ccCCCHHHHHHHHHHcCCCccee
Confidence 9999999999998755 678888 988553310000000000000000000 12357888999999999999877
Q ss_pred Eec
Q 044482 330 ICR 332 (345)
Q Consensus 330 ~~~ 332 (345)
.+.
T Consensus 279 ~d~ 281 (334)
T 3iei_A 279 VDM 281 (334)
T ss_dssp EEH
T ss_pred ecH
Confidence 655
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.94 E-value=2.6e-05 Score=68.88 Aligned_cols=103 Identities=8% Similarity=-0.015 Sum_probs=64.2
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hH----hhhCC---CceEEeccCCc-CCCC--CCE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YV----IKNAP---CVEHVEGDMFV-NVPS--GQA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~----i~~a~---ri~~~~gd~~~-~~p~--~D~ 237 (345)
.+.+..- +....+|||||||+|.++..++++.+-.++.++|+- .+ +.... ++.....++-. .++. .|+
T Consensus 65 ei~ek~~-l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~l~~~~~Dl 143 (277)
T 3evf_A 65 WFHERGY-VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHRLEPVKCDT 143 (277)
T ss_dssp HHHHTTS-SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHHhCC-CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehhcCCCCccE
Confidence 4445433 666779999999999999998887665455555542 11 11010 33444444322 4443 399
Q ss_pred EEeccccc---cCChh-HHHHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 238 IFTKSVLL---NWSDE-QCLKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 238 i~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|++.-..+ +|.|. ....+|+.+.+.|+| | |.+++-
T Consensus 144 VlsD~apnsG~~~~D~~rs~~LL~~a~~~Lkp---G~G~FV~K 183 (277)
T 3evf_A 144 LLCDIGESSSSSVTEGERTVRVLDTVEKWLAC---GVDNFCVK 183 (277)
T ss_dssp EEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred EEecCccCcCchHHHHHHHHHHHHHHHHHhCC---CCCeEEEE
Confidence 99876554 23333 233578999999999 9 877664
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.3e-05 Score=79.24 Aligned_cols=105 Identities=11% Similarity=-0.071 Sum_probs=73.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH------------------------------------------CCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT------------------------------------------YPQI 204 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~------------------------------------------~p~~ 204 (345)
+..++.... |....+|+|.+||+|.+++..+.. .++.
T Consensus 179 Aa~ll~~~~-~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~ 257 (703)
T 3v97_A 179 AAAIVMRSG-WQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSS 257 (703)
T ss_dssp HHHHHHHTT-CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHhhC-CCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCc
Confidence 344555555 777789999999999999987764 2346
Q ss_pred eEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC--C-C-CEEEeccccc--cCChhHHHHHHHHHH---hhC
Q 044482 205 TGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP--S-G-QAIFTKSVLL--NWSDEQCLKILKNCY---DAL 263 (345)
Q Consensus 205 ~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p--~-~-D~i~~~~vlh--~~~d~~~~~iL~~~~---~aL 263 (345)
+++++|+ |.+++.|+ +++|..+|+.+ ..| . . |+|+++--.. .=++++...+.+.+. +.+
T Consensus 258 ~i~G~Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~Rlg~~~~l~~ly~~l~~~lk~~ 337 (703)
T 3v97_A 258 HFYGSDSDARVIQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGERLDSEPALIALHSLLGRIMKNQ 337 (703)
T ss_dssp CEEEEESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC---CCHHHHHHHHHHHHHHHHH
T ss_pred cEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCccccccchhHHHHHHHHHHHHHHhh
Confidence 8999999 88888776 48999999987 333 2 3 9999873322 112334445555444 445
Q ss_pred CCCCCCcEEEEE
Q 044482 264 PKSRKHGRTQLR 275 (345)
Q Consensus 264 ~p~~~gG~lli~ 275 (345)
.| ||+++|+
T Consensus 338 ~~---g~~~~il 346 (703)
T 3v97_A 338 FG---GWNLSLF 346 (703)
T ss_dssp CT---TCEEEEE
T ss_pred CC---CCeEEEE
Confidence 58 9998887
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.93 E-value=8.2e-06 Score=73.36 Aligned_cols=94 Identities=12% Similarity=0.033 Sum_probs=71.6
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCCC---CC-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNVP---SG-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~p---~~-D~i 238 (345)
+++++||=||||.|..++.+++..|..+++++|+ |.|++.++ |++++.+|.++.+. +. |+|
T Consensus 82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI 161 (294)
T 3o4f_A 82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI 161 (294)
T ss_dssp SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence 4568999999999999999998777778999999 88887654 89999999998443 23 998
Q ss_pred EeccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-..=- ..... -...++.|+++|+| ||.++..
T Consensus 162 i~D~~dp-~~~~~~L~t~eFy~~~~~~L~p---~Gv~v~q 197 (294)
T 3o4f_A 162 ISDCTDP-IGPGESLFTSAFYEGCKRCLNP---GGIFVAQ 197 (294)
T ss_dssp EESCCCC-CCTTCCSSCCHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCCCc-CCCchhhcCHHHHHHHHHHhCC---CCEEEEe
Confidence 8643211 11110 13579999999999 9977765
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=8.9e-06 Score=82.30 Aligned_cols=93 Identities=13% Similarity=0.119 Sum_probs=69.6
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC---CC-CEEEecc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP---SG-QAIFTKS 242 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p---~~-D~i~~~~ 242 (345)
...+|||+|||+|.++..+++.. ..+++++|+ +.+++.++ +++++.+|+++.++ .. |+|++.-
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii~DP 617 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANEQFDLIFIDP 617 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCCCEEEEEECC
T ss_pred CCCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCCCccEEEECC
Confidence 34689999999999999998753 346999999 77777665 48899999987322 23 9999853
Q ss_pred cc--------ccCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VL--------LNWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vl--------h~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-. +.+. .....++++++.+.|+| ||.|++.
T Consensus 618 P~f~~~~~~~~~~~~~~~~~~ll~~a~~~Lkp---gG~L~~s 656 (703)
T 3v97_A 618 PTFSNSKRMEDAFDVQRDHLALMKDLKRLLRA---GGTIMFS 656 (703)
T ss_dssp CSBC-------CCBHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHhcCC---CcEEEEE
Confidence 21 1111 13456899999999999 9998876
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.88 E-value=8.1e-06 Score=72.36 Aligned_cols=125 Identities=16% Similarity=0.093 Sum_probs=82.6
Q ss_pred cccceEEecCCccHHHHHHHHH-------CCC-----CeEEEeeh-h---hHhh------------------h-------
Q 044482 179 ELKKLVDVASCLGANMSLIVNT-------YPQ-----ITGINFDL-P---YVIK------------------N------- 217 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~-------~p~-----~~~~~~Dl-p---~~i~------------------~------- 217 (345)
...+|||||+|+|..+..+++. +|+ ++++.++. | +.+. .
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3468999999999999887765 674 67898886 4 2211 1
Q ss_pred ------CC---CceEEeccCCcC---CCC----C-CEEEeccc-cc----cCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 218 ------AP---CVEHVEGDMFVN---VPS----G-QAIFTKSV-LL----NWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 218 ------a~---ri~~~~gd~~~~---~p~----~-D~i~~~~v-lh----~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. +++++.||+.+- ++. . |+|++--. -. .|+ ..+|+.+++.|+| ||.++..
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp~~~p~lw~----~~~l~~l~~~L~p---GG~l~ty 212 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAPAKNPDMWT----QNLFNAMARLARP---GGTLATF 212 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCTTTCGGGCC----HHHHHHHHHHEEE---EEEEEES
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCcccChhhcC----HHHHHHHHHHcCC---CcEEEEE
Confidence 11 577889998762 322 3 88887421 10 133 3689999999999 9977654
Q ss_pred eccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 276 SKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 276 ~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
.. ...+++.|.++||++.++...+.-..++.+.|+
T Consensus 213 -sa---------------------------------a~~vrr~L~~aGF~v~~~~g~~~kr~m~~a~~~ 247 (257)
T 2qy6_A 213 -TS---------------------------------AGFVRRGLQEAGFTMQKRKGFGRKREMLCGVME 247 (257)
T ss_dssp -CC---------------------------------BHHHHHHHHHHTEEEEEECCSTTCCCEEEEEEC
T ss_pred -eC---------------------------------CHHHHHHHHHCCCEEEeCCCCCCCCceEEEEec
Confidence 10 023578888999997765444444556666654
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=97.87 E-value=3e-05 Score=77.04 Aligned_cols=122 Identities=10% Similarity=0.006 Sum_probs=76.4
Q ss_pred hhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH----C---------CCCeEE
Q 044482 141 DCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT----Y---------PQITGI 207 (345)
Q Consensus 141 ~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~----~---------p~~~~~ 207 (345)
.|+.+++|+...+.|.+|+... +.+....-.....|+|||||+|-++...+++ . ...+++
T Consensus 378 tYe~fekD~vRy~~Y~~AI~~a-------l~d~~~~~~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVy 450 (745)
T 3ua3_A 378 VYNTFEQDQIKYDVYGEAVVGA-------LKDLGADGRKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLY 450 (745)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHH-------HHHHHTTCCSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEE
T ss_pred HHHHHcCChhhHHHHHHHHHHH-------HHHhhcccCCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEE
Confidence 3555666776666777665432 1111110122467999999999996432222 1 234789
Q ss_pred Eeeh-hhHhhhCC---------CceEEeccCCc-CC------CC-CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCC
Q 044482 208 NFDL-PYVIKNAP---------CVEHVEGDMFV-NV------PS-GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKH 269 (345)
Q Consensus 208 ~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~------p~-~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~g 269 (345)
.+|- |..+...+ +|+++.+|+.+ .+ |+ .|+|+.-+.=.....+-...+|..+.+.|+| |
T Consensus 451 AVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nEL~pe~Ld~v~r~Lkp---~ 527 (745)
T 3ua3_A 451 IVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNELSPECLDGVTGFLKP---T 527 (745)
T ss_dssp EEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGGSHHHHHHTTGGGSCT---T
T ss_pred EEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchhccHHHHHHHHHhCCC---C
Confidence 9998 32221111 79999999998 66 54 3999887664333444455678888899999 8
Q ss_pred cEE
Q 044482 270 GRT 272 (345)
Q Consensus 270 G~l 272 (345)
|.+
T Consensus 528 Gi~ 530 (745)
T 3ua3_A 528 TIS 530 (745)
T ss_dssp CEE
T ss_pred cEE
Confidence 843
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.71 E-value=1.2e-05 Score=75.07 Aligned_cols=83 Identities=8% Similarity=0.004 Sum_probs=59.9
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CCC------------
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VPS------------ 234 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p~------------ 234 (345)
..+|||+|||+|.++..+++.. .+++++|. +.+++.|+ +++|+.+|+.+. ++.
T Consensus 214 ~~~vLDl~cG~G~~~l~la~~~--~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~ 291 (369)
T 3bt7_A 214 KGDLLELYCGNGNFSLALARNF--DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDL 291 (369)
T ss_dssp CSEEEEESCTTSHHHHHHGGGS--SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCG
T ss_pred CCEEEEccCCCCHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccccccccccc
Confidence 3679999999999999998754 47999998 78877665 689999998762 221
Q ss_pred ---C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 ---G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ---~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++.-- . ..+..++.+.|++ +|+|+.+
T Consensus 292 ~~~~fD~Vv~dPP-----r---~g~~~~~~~~l~~---~g~ivyv 325 (369)
T 3bt7_A 292 KSYQCETIFVDPP-----R---SGLDSETEKMVQA---YPRILYI 325 (369)
T ss_dssp GGCCEEEEEECCC-----T---TCCCHHHHHHHTT---SSEEEEE
T ss_pred ccCCCCEEEECcC-----c---cccHHHHHHHHhC---CCEEEEE
Confidence 3 88876321 1 1234455566678 8888888
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00016 Score=65.79 Aligned_cols=138 Identities=14% Similarity=0.091 Sum_probs=91.8
Q ss_pred cccceEEecCCccHHHHHHHHHCC-CCeEEEeehhhHhhhCC------------CceEEeccCCcCCC----------CC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP-QITGINFDLPYVIKNAP------------CVEHVEGDMFVNVP----------SG 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~p----------~~ 235 (345)
+...||+||||-=..+..+. .| +++++-+|.|.+++..+ +..++..|+.+.+. +.
T Consensus 102 g~~QvV~LGaGlDTra~Rl~--~~~~~~v~evD~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~ 179 (310)
T 2uyo_A 102 GIRQFVILASGLDSRAYRLD--WPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSA 179 (310)
T ss_dssp TCCEEEEETCTTCCHHHHSC--CCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTS
T ss_pred CCCeEEEeCCCCCchhhhcc--CCCCcEEEEcCCHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCC
Confidence 34679999999988866654 35 47899999999876433 67889999875211 11
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhcc-chhhhhhc--------C
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTL-DIVMYDLF--------P 305 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~-d~~~~~~~--------~ 305 (345)
-++++-.+||++++++...+|+.+.+.+.| |+. ++. |.+.++.. ........+. . .+... .
T Consensus 180 Pt~~i~Egvl~Yl~~~~~~~ll~~l~~~~~~---gs~-l~~-d~~~~~~~--~~~~~~~~~~~~--~~~~~g~~~~~~l~ 250 (310)
T 2uyo_A 180 RTAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSR-IAV-ETSPLHGD--EWREQMQLRFRR--VSDALGFEQAVDVQ 250 (310)
T ss_dssp CEEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCE-EEE-ECCCTTCS--HHHHHHHHHHHH--HHC-----------
T ss_pred CEEEEEechHhhCCHHHHHHHHHHHHHhCCC---CeE-EEE-EecCCCCc--chhHHHHHHHHH--HHHHcCCcCCCCcc
Confidence 467888999999999999999999999888 765 455 56554331 0000000000 0 00000 0
Q ss_pred CCcc-CC-HHHHHHHHHHCCCCce
Q 044482 306 QAKG-RT-AGEFKALAMAAGFGTI 327 (345)
Q Consensus 306 ~~~~-rt-~~e~~~ll~~aGf~~~ 327 (345)
+-.. ++ .++..++|.+.||+.+
T Consensus 251 ~~~~~~~~~~~~~~~f~~~G~~~~ 274 (310)
T 2uyo_A 251 ELIYHDENRAVVADWLNRHGWRAT 274 (310)
T ss_dssp CCTTCCTTCCCHHHHHTTTTEEEE
T ss_pred ccccCCCChHHHHHHHHHCcCccc
Confidence 1112 36 7899999999999887
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=97.64 E-value=2.9e-05 Score=72.74 Aligned_cols=87 Identities=13% Similarity=-0.025 Sum_probs=66.5
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------------CceEEeccCCcC---
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------CVEHVEGDMFVN--- 231 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------ri~~~~gd~~~~--- 231 (345)
..+|||+|||+|..+..++++.|..+++.+|+ +..++.++ +++++.+|+.+.
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~ 127 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 127 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence 47899999999999999999988889999999 66655443 277888998762
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+.. |+|++.- . .+ ...+|..+.+.|+| ||.+++.
T Consensus 128 ~~~~fD~I~lDP-~--~~---~~~~l~~a~~~lk~---gG~l~vt 163 (378)
T 2dul_A 128 RHRYFHFIDLDP-F--GS---PMEFLDTALRSAKR---RGILGVT 163 (378)
T ss_dssp STTCEEEEEECC-S--SC---CHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccCCCCEEEeCC-C--CC---HHHHHHHHHHhcCC---CCEEEEE
Confidence 2233 9888542 1 11 14688999999999 9977776
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=97.63 E-value=7.2e-05 Score=66.18 Aligned_cols=104 Identities=13% Similarity=0.074 Sum_probs=67.2
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh-hHhhhCC-------Cc-eEEec-cCCcCCC-C-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP-YVIKNAP-------CV-EHVEG-DMFVNVP-S- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp-~~i~~a~-------ri-~~~~g-d~~~~~p-~- 234 (345)
...+.+.+- +....+|||||||.|.++...+++.+-.+++++|+- .+...+. ++ .+... |+.. ++ .
T Consensus 79 L~ei~eK~~-Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~ 156 (282)
T 3gcz_A 79 LRWMEERGY-VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIP 156 (282)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCC
Confidence 345666664 777789999999999999999988776678888872 2111111 22 23322 4433 33 2
Q ss_pred CCEEEeccccc---cCChh-HHHHHHHHHHhhCCCCCCC--cEEEEE
Q 044482 235 GQAIFTKSVLL---NWSDE-QCLKILKNCYDALPKSRKH--GRTQLR 275 (345)
Q Consensus 235 ~D~i~~~~vlh---~~~d~-~~~~iL~~~~~aL~p~~~g--G~lli~ 275 (345)
.|+|++--..+ .+.|. ....+|.-+.+.|+| | |.+++-
T Consensus 157 ~DvVLSDmApnsG~~~~D~~rs~~LL~~A~~~Lk~---g~~G~Fv~K 200 (282)
T 3gcz_A 157 GDTLLCDIGESSPSIAVEEQRTLRVLNCAKQWLQE---GNYTEFCIK 200 (282)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHH---HCCCEEEEE
T ss_pred cCEEEecCccCCCChHHHHHHHHHHHHHHHHHcCC---CCCCcEEEE
Confidence 39999876654 11122 233578888999999 8 877665
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00024 Score=64.64 Aligned_cols=64 Identities=20% Similarity=0.257 Sum_probs=50.3
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----CC-CEEE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-----SG-QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-----~~-D~i~ 239 (345)
.....+|||+|||+|..+..+++.. +..+++.+|+ +..++.++ +++++.+|+.+..+ .. |.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 4556799999999999999999874 5689999999 77666544 68999999877221 22 8888
Q ss_pred e
Q 044482 240 T 240 (345)
Q Consensus 240 ~ 240 (345)
+
T Consensus 180 ~ 180 (309)
T 2b9e_A 180 L 180 (309)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00012 Score=71.88 Aligned_cols=104 Identities=14% Similarity=0.087 Sum_probs=73.0
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCC------------------CCeEEEeeh-hhHhhhCC---------
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP------------------QITGINFDL-PYVIKNAP--------- 219 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p------------------~~~~~~~Dl-p~~i~~a~--------- 219 (345)
..+++.+. .....+|+|.|||+|.++..+++... ..+++++|+ |.+++.|+
T Consensus 159 ~~mv~~l~-p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~gi~ 237 (541)
T 2ar0_A 159 KTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDIE 237 (541)
T ss_dssp HHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHhc-cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHhCCC
Confidence 33445444 34457999999999999988876531 237899998 77766554
Q ss_pred C-----ceEEeccCCc-C-CC-CC-CEEEeccccccCC------------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 C-----VEHVEGDMFV-N-VP-SG-QAIFTKSVLLNWS------------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 r-----i~~~~gd~~~-~-~p-~~-D~i~~~~vlh~~~------------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. +.+..+|.+. + .+ .. |+|+++--+.... ...-...+.++.+.|+| ||++.++
T Consensus 238 ~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---gGr~a~V 311 (541)
T 2ar0_A 238 GNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHP---GGRAAVV 311 (541)
T ss_dssp CBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCC---CCEEEEE
Confidence 2 6789999987 3 22 23 9999875443221 11124689999999999 9998888
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00011 Score=69.06 Aligned_cols=88 Identities=11% Similarity=0.017 Sum_probs=67.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC----------C-ceEEeccCCcCC----CCC-CEEEe
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP----------C-VEHVEGDMFVNV----PSG-QAIFT 240 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~----------r-i~~~~gd~~~~~----p~~-D~i~~ 240 (345)
...+|||++||+|.++..++++.++ .+++.+|+ |..++.++ + ++++.+|.++-. +.. |+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4578999999999999999998766 57899999 77666554 3 899999987622 223 99988
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.- . ... ..++..+.+.|+| ||.|++.
T Consensus 132 DP--~--g~~--~~~l~~a~~~Lk~---gGll~~t 157 (392)
T 3axs_A 132 DP--F--GTP--VPFIESVALSMKR---GGILSLT 157 (392)
T ss_dssp CC--S--SCC--HHHHHHHHHHEEE---EEEEEEE
T ss_pred CC--C--cCH--HHHHHHHHHHhCC---CCEEEEE
Confidence 64 1 111 3578899999999 9977776
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=59.18 Aligned_cols=103 Identities=9% Similarity=0.032 Sum_probs=64.3
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhh-HhhhC------C-C-ceEEec-cCCcCCCC-CCE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPY-VIKNA------P-C-VEHVEG-DMFVNVPS-GQA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~-~i~~a------~-r-i~~~~g-d~~~~~p~-~D~ 237 (345)
.+.+. .-+....+||||||++|.++..++++.+-..++++|+.. +.... . + +.+..+ |++.-.+. .|+
T Consensus 72 ei~ek-~l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~~~~~~~~iv~~~~~~di~~l~~~~~Dl 150 (300)
T 3eld_A 72 WLHER-GYLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIHMQTLGWNIVKFKDKSNVFTMPTEPSDT 150 (300)
T ss_dssp HHHHH-TSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCTTTSCCCCCSE
T ss_pred HHHHh-CCCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccccccccCCceEEeecCceeeecCCCCcCE
Confidence 44444 335667899999999999999999877656778888732 11111 1 2 233333 54432222 399
Q ss_pred EEeccccc----cCChhHHHHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 238 IFTKSVLL----NWSDEQCLKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 238 i~~~~vlh----~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|++.-.-+ ..+......+|.-+.+.|+| | |.+++-
T Consensus 151 VlsD~APnsG~~~~D~~rs~~LL~~A~~~Lkp---G~G~FV~K 190 (300)
T 3eld_A 151 LLCDIGESSSNPLVERDRTMKVLENFERWKHV---NTENFCVK 190 (300)
T ss_dssp EEECCCCCCSSHHHHHHHHHHHHHHHHHHCCT---TCCEEEEE
T ss_pred EeecCcCCCCCHHHHHHHHHHHHHHHHHHhcC---CCCcEEEE
Confidence 98865443 11111224578888999999 9 987765
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00074 Score=62.39 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=66.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhh---CCCceEEeccCCcCCC-CC--CEEEeccccccCChh
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKN---APCVEHVEGDMFVNVP-SG--QAIFTKSVLLNWSDE 250 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~---a~ri~~~~gd~~~~~p-~~--D~i~~~~vlh~~~d~ 250 (345)
+....++||+||++|.++..++++ +.+++.+|.-++-.. ..+|+++.+|.++..| .+ |+|++-.+. +..
T Consensus 209 l~~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l~~~l~~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~---~p~ 283 (375)
T 4auk_A 209 LANGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPMAQSLMDTGQVTWLREDGFKFRPTRSNISWMVCDMVE---KPA 283 (375)
T ss_dssp SCTTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCCCHHHHTTTCEEEECSCTTTCCCCSSCEEEEEECCSS---CHH
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhcChhhccCCCeEEEeCccccccCCCCCcCEEEEcCCC---ChH
Confidence 345689999999999999999987 579999997444332 2289999999999444 33 888886654 445
Q ss_pred HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 251 QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 251 ~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....++.+....... ++.|+.+
T Consensus 284 ~~~~l~~~wl~~~~~---~~aI~~l 305 (375)
T 4auk_A 284 KVAALMAQWLVNGWC---RETIFNL 305 (375)
T ss_dssp HHHHHHHHHHHTTSC---SEEEEEE
T ss_pred HhHHHHHHHHhcccc---ceEEEEE
Confidence 556666666666665 5655555
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00059 Score=60.27 Aligned_cols=74 Identities=11% Similarity=0.219 Sum_probs=53.6
Q ss_pred HHHhccCcccc--cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhH-------hhhC-----------CCceEEeccC
Q 044482 170 ILEIYKGFKEL--KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYV-------IKNA-----------PCVEHVEGDM 228 (345)
Q Consensus 170 i~~~~~~~~~~--~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~-------i~~a-----------~ri~~~~gd~ 228 (345)
+.+.+. .... .+|||+|||+|..+..++.+ +.+++++|. |.+ ++.+ .|++++.+|.
T Consensus 78 l~~al~-l~~g~~~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~ 154 (258)
T 2oyr_A 78 VAKAVG-IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASS 154 (258)
T ss_dssp HHHHTT-CBTTBCCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCH
T ss_pred HHHHhc-ccCCCCCEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCH
Confidence 344444 4444 79999999999999999998 457999999 543 2211 2688999998
Q ss_pred CcC---CCCC-CEEEecccccc
Q 044482 229 FVN---VPSG-QAIFTKSVLLN 246 (345)
Q Consensus 229 ~~~---~p~~-D~i~~~~vlh~ 246 (345)
.+. +++. |+|++.-..++
T Consensus 155 ~~~L~~~~~~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 155 LTALTDITPRPQVVYLDPMFPH 176 (258)
T ss_dssp HHHSTTCSSCCSEEEECCCCCC
T ss_pred HHHHHhCcccCCEEEEcCCCCC
Confidence 763 2334 99999876654
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00021 Score=70.05 Aligned_cols=148 Identities=16% Similarity=0.145 Sum_probs=91.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC---------------CCeEEEeeh-hhHhhhCC----------C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP---------------QITGINFDL-PYVIKNAP----------C 220 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p---------------~~~~~~~Dl-p~~i~~a~----------r 220 (345)
+..+++.+. -. ..+|+|.+||+|.++..+++..+ ..+++++|+ |.++..|+ +
T Consensus 234 v~lmv~ll~-p~-~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~ 311 (544)
T 3khk_A 234 VTLIVEMLE-PY-KGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGIDFN 311 (544)
T ss_dssp HHHHHHHHC-CC-SEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTCCCB
T ss_pred HHHHHHHHh-cC-CCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 344445444 22 24999999999999988765432 467899999 77776665 3
Q ss_pred ceEEeccCCc-CC-CC-C-CEEEeccccc--cCChhH-------------------------HHHHHHHHHhhCCCCCCC
Q 044482 221 VEHVEGDMFV-NV-PS-G-QAIFTKSVLL--NWSDEQ-------------------------CLKILKNCYDALPKSRKH 269 (345)
Q Consensus 221 i~~~~gd~~~-~~-p~-~-D~i~~~~vlh--~~~d~~-------------------------~~~iL~~~~~aL~p~~~g 269 (345)
+.+..+|.+. +. +. . |+|+++=-+. .|..+. -...++++.+.|+| |
T Consensus 312 i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~---g 388 (544)
T 3khk_A 312 FGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAP---T 388 (544)
T ss_dssp CCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEE---E
T ss_pred cceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhcc---C
Confidence 4448899887 32 32 3 9999863332 232211 12588999999999 9
Q ss_pred cEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC--------ceEEEEE
Q 044482 270 GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY--------CYWVIEF 341 (345)
Q Consensus 270 G~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~--------~~~vi~~ 341 (345)
|++.++ +|+. . ++ ++ ......++++|-+.+. +..+..+|. ...|+..
T Consensus 389 Gr~aiV----lP~g----------~--------L~-~~-~~~~~~iRk~Lle~~~-l~aII~LP~~lF~~t~i~t~Ilvl 443 (544)
T 3khk_A 389 GSMALL----LANG----------S--------MS-SN-TNNEGEIRKTLVEQDL-VECMVALPGQLFTNTQIPACIWFL 443 (544)
T ss_dssp EEEEEE----EETH----------H--------HH-CC-GGGHHHHHHHHHHTTC-EEEEEECCTTBCCSCSSCEEEEEE
T ss_pred ceEEEE----ecch----------h--------hh-cC-cchHHHHHHHHHhCCc-HhEEEECCCCCCCCCCCCeEEEEE
Confidence 998877 1111 0 01 10 0125667887777753 556666653 2466766
Q ss_pred EcC
Q 044482 342 YKP 344 (345)
Q Consensus 342 ~k~ 344 (345)
.|.
T Consensus 444 ~K~ 446 (544)
T 3khk_A 444 TKD 446 (544)
T ss_dssp ESC
T ss_pred ecC
Confidence 664
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00086 Score=53.40 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=57.2
Q ss_pred cccceEEecCCcc-HHHHHHHHHCCCCeEEEeeh-hhHhhhCCCceEEeccCCcCCC---CC-CEEEeccccccCChhHH
Q 044482 179 ELKKLVDVASCLG-ANMSLIVNTYPQITGINFDL-PYVIKNAPCVEHVEGDMFVNVP---SG-QAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 179 ~~~~vlDiGgG~G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p---~~-D~i~~~~vlh~~~d~~~ 252 (345)
...++||||||.| ..+..|++.. +..+++.|+ |..++ ++..|+|++.. ++ |+|+..+ ++.+.
T Consensus 35 ~~~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av~------~v~dDiF~P~~~~Y~~~DLIYsir-----PP~El 102 (153)
T 2k4m_A 35 PGTRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHGG------IVRDDITSPRMEIYRGAALIYSIR-----PPAEI 102 (153)
T ss_dssp SSSEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSSTT------EECCCSSSCCHHHHTTEEEEEEES-----CCTTT
T ss_pred CCCcEEEEccCCChHHHHHHHHhC-CCeEEEEECCccccc------eEEccCCCCcccccCCcCEEEEcC-----CCHHH
Confidence 4579999999999 5888888753 678999998 54333 89999999665 24 8886654 34455
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 253 LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..-+.++++...- -++|.
T Consensus 103 ~~~i~~lA~~v~a-----dliI~ 120 (153)
T 2k4m_A 103 HSSLMRVADAVGA-----RLIIK 120 (153)
T ss_dssp HHHHHHHHHHHTC-----EEEEE
T ss_pred HHHHHHHHHHcCC-----CEEEE
Confidence 5666666666544 56666
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00031 Score=66.14 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=48.7
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC-----CCCEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP-----SGQAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p-----~~D~i~~~ 241 (345)
...+|||+|||+|..+..+++.. .+++++|. +.+++.++ +++++.+|+++.++ ..|+|++.
T Consensus 93 ~g~~VLDLgcG~G~~al~LA~~g--~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lD 170 (410)
T 3ll7_A 93 EGTKVVDLTGGLGIDFIALMSKA--SQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVD 170 (410)
T ss_dssp TTCEEEESSCSSSHHHHHHHTTC--SEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEEC
T ss_pred CCCEEEEeCCCchHHHHHHHhcC--CEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEEC
Confidence 35799999999999999998774 58999999 77777554 48899999987322 23999983
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0014 Score=66.18 Aligned_cols=94 Identities=7% Similarity=-0.032 Sum_probs=65.7
Q ss_pred cccceEEecCCccHHHHHHHHHCC---CCeEEEeeh-hhHhhhC--C-------------CceEEeccCCcCC--C-CC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP---QITGINFDL-PYVIKNA--P-------------CVEHVEGDMFVNV--P-SG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p---~~~~~~~Dl-p~~i~~a--~-------------ri~~~~gd~~~~~--p-~~- 235 (345)
...+|+|.|||+|.++.+++++.+ ..+++++|+ |.+++.| + ...+...|++++. + ..
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 457899999999999999999876 357899999 6666655 1 1355666776622 2 23
Q ss_pred CEEEecccc-ccCC-hhH-------------------------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVL-LNWS-DEQ-------------------------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vl-h~~~-d~~-------------------------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|+++=-. ..+. +.. ...+++++.+.|+| ||++.++
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKp---GGrLAfI 464 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQD---GTVISAI 464 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCT---TCEEEEE
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCC---CcEEEEE
Confidence 999986333 1111 111 23478889999999 9998887
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0025 Score=62.36 Aligned_cols=93 Identities=14% Similarity=0.129 Sum_probs=68.1
Q ss_pred cccceEEecCCccHHHHHHHHHC---CCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc-CCC---C-C-CE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTY---PQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV-NVP---S-G-QA 237 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~---p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~-~~p---~-~-D~ 237 (345)
...+|+|.+||+|.++..+++.. +..+++++|+ +.++..|+ ++.+..+|.+. ++| . . |+
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~gDtL~~d~p~~~~~~fD~ 300 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHNADTLDEDWPTQEPTNFDG 300 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCTTTSCSCCSSCCCBSE
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEecceecccccccccccccE
Confidence 45689999999999999998884 3578999999 66666554 35688999997 333 2 2 99
Q ss_pred EEecccc-ccCCh---------------------hHHHHHHHHHHhhCC-CCCCCcEEEEE
Q 044482 238 IFTKSVL-LNWSD---------------------EQCLKILKNCYDALP-KSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vl-h~~~d---------------------~~~~~iL~~~~~aL~-p~~~gG~lli~ 275 (345)
|+++=-+ ..|.. .+ ...+.++.+.|+ | ||++.++
T Consensus 301 IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~-~~Fl~~~l~~Lk~~---gGr~a~V 357 (542)
T 3lkd_A 301 VLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKAD-FAFLLHGYYHLKQD---NGVMAIV 357 (542)
T ss_dssp EEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCH-HHHHHHHHHTBCTT---TCEEEEE
T ss_pred EEecCCcCCccccchhhhhhhhhhhhhhcCCCchhh-HHHHHHHHHHhCCC---ceeEEEE
Confidence 9976211 12211 11 248999999999 9 9998877
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00042 Score=64.24 Aligned_cols=93 Identities=13% Similarity=0.106 Sum_probs=66.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------------CceEEeccCCcCC---C---C
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------------CVEHVEGDMFVNV---P---S 234 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------------ri~~~~gd~~~~~---p---~ 234 (345)
++++||=||||.|..++++++. |..+++++|+ |.|++.++ |++++.+|.++.+ + .
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 3579999999999999999974 5578999999 88887654 5788889987522 1 2
Q ss_pred C-CEEEecccccc-CCh------hH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G-QAIFTKSVLLN-WSD------EQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~-D~i~~~~vlh~-~~d------~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+|++--.-.. -++ .. ...+++.++++|+| ||.++..
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p---~GVlv~Q 330 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQ---DGKYFTQ 330 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCC---CCEEEEe
Confidence 2 88887522110 011 11 24678999999999 8866654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=59.66 Aligned_cols=143 Identities=11% Similarity=0.033 Sum_probs=100.8
Q ss_pred cccceEEecCCccHHHHHHHHHCC--------CCeEEEeehhhHhhhCC-------------------------------
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYP--------QITGINFDLPYVIKNAP------------------------------- 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p--------~~~~~~~Dlp~~i~~a~------------------------------- 219 (345)
+...||-+|||.=...-.|...+| +++++-+|+|++++.-+
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 356899999999999999988866 67889999998865211
Q ss_pred --CceEEeccCCc--CC----------C-CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 220 --CVEHVEGDMFV--NV----------P-SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 220 --ri~~~~gd~~~--~~----------p-~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+..+++.|+.+ .+ . +. -++++--+|.+++.+++.++|+.+.+ + | +|.+++. |.+.+..
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl~~~~~~~ll~~~~~-~-~---~~~~~~~-e~~~~~~ 260 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYMKPERSDSIIEATSK-M-E---NSHFIIL-EQLIPKG 260 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGSCHHHHHHHHHHHHT-S-S---SEEEEEE-EECCTTC
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEcCHHHHHHHHHHHhh-C-C---CceEEEE-EeecCCC
Confidence 56788889876 21 2 22 56777899999999999999999984 5 6 7888888 9887754
Q ss_pred CCCchhhhhhhccchhhhhhc----C-CCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 284 PEFSSINRNILTLDIVMYDLF----P-QAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 284 ~~~~~~~~~~~~~d~~~~~~~----~-~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
+.++. ...+ +..+... . -....+.++..+.|.+.||+.+.....
T Consensus 261 ~~d~f----~~~m-~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~Gw~~v~~~~~ 309 (695)
T 2zwa_A 261 PFEPF----SKQM-LAHFKRNDSPLQSVLKYNTIESQVQRFNKLGFAYVNVGDM 309 (695)
T ss_dssp TTSHH----HHHH-HHHHHHTTCCCCGGGTCCSHHHHHHHHHHTTCCEEEEEEH
T ss_pred CCChH----HHHH-HHHHHHcCCCCCccccCCCHHHHHHHHHHCCCCCcceeeH
Confidence 43321 1111 0011110 0 013457999999999999987666543
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00059 Score=59.48 Aligned_cols=104 Identities=13% Similarity=0.020 Sum_probs=63.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH--CCC--CeEEEeehhhHhhhC---CCc---eEEec-cCCcCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT--YPQ--ITGINFDLPYVIKNA---PCV---EHVEG-DMFVNVPS- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~--~p~--~~~~~~Dlp~~i~~a---~ri---~~~~g-d~~~~~p~- 234 (345)
..+|-+.+ -+....+|||+||+.|.++...+++ -.. ...+++|+ ++.+.. .++ +|..| ||++..+.
T Consensus 62 L~EIdeK~-likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~~~P~~~~~~Gv~~i~~~~G~Df~~~~~~~ 139 (269)
T 2px2_A 62 LRWLVERR-FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-HEEPMLMQSYGWNIVTMKSGVDVFYKPSEI 139 (269)
T ss_dssp HHHHHHTT-SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-SCCCCCCCSTTGGGEEEECSCCGGGSCCCC
T ss_pred HHHHHHcC-CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-ccCCCcccCCCceEEEeeccCCccCCCCCC
Confidence 34555665 3777889999999999999999886 211 12355563 222221 244 45557 99984343
Q ss_pred CCEEEecccc--ccCChhH--HHHHHHHHHhhCCCCCCCc-EEEEE
Q 044482 235 GQAIFTKSVL--LNWSDEQ--CLKILKNCYDALPKSRKHG-RTQLR 275 (345)
Q Consensus 235 ~D~i~~~~vl--h~~~d~~--~~~iL~~~~~aL~p~~~gG-~lli~ 275 (345)
.|+|++--.= -++.-++ ....|.-+.+.|+| || .+++-
T Consensus 140 ~DvVLSDMAPnSG~~~vD~~Rs~~aL~~A~~~Lk~---gG~~FvvK 182 (269)
T 2px2_A 140 SDTLLCDIGESSPSAEIEEQRTLRILEMVSDWLSR---GPKEFCIK 182 (269)
T ss_dssp CSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHTT---CCSEEEEE
T ss_pred CCEEEeCCCCCCCccHHHHHHHHHHHHHHHHHhhc---CCcEEEEE
Confidence 4999874322 1111111 12356667789999 88 66665
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0014 Score=58.24 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=50.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~ 230 (345)
.+.+++.+. ......+||.+||.|..+..|+++ +.+++++|. |..++.++ |++++.+||.+
T Consensus 11 l~e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~L~~~rv~lv~~~f~~ 77 (285)
T 1wg8_A 11 YQEALDLLA-VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRH 77 (285)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHTCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHhhccCCEEEEECCcch
Confidence 456677776 667789999999999999999998 679999999 77776553 78888888765
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0055 Score=55.16 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=75.0
Q ss_pred ccceEEecCCccHHHHHH----HHHCCCCe--EEEeehh---------hH--------hhhCC-------CceEEeccCC
Q 044482 180 LKKLVDVASCLGANMSLI----VNTYPQIT--GINFDLP---------YV--------IKNAP-------CVEHVEGDMF 229 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l----~~~~p~~~--~~~~Dlp---------~~--------i~~a~-------ri~~~~gd~~ 229 (345)
.-+|+|+|=|+|...... .+..|+.+ ++.++.. +. .+... .+.+.-||+.
T Consensus 97 ~~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~ 176 (308)
T 3vyw_A 97 VIRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDAR 176 (308)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHH
T ss_pred CcEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHH
Confidence 357999999999865443 34578765 4555521 00 01111 3556778876
Q ss_pred cCCC---CC--CEEEecccc-----ccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchh
Q 044482 230 VNVP---SG--QAIFTKSVL-----LNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIV 299 (345)
Q Consensus 230 ~~~p---~~--D~i~~~~vl-----h~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~ 299 (345)
+.++ .. |++++-..= ..|+ ..+|+++++.++| ||.+.-.
T Consensus 177 ~~l~~l~~~~~Da~flDgFsP~kNPeLWs----~e~f~~l~~~~~p---gg~laTY------------------------ 225 (308)
T 3vyw_A 177 KRIKEVENFKADAVFHDAFSPYKNPELWT----LDFLSLIKERIDE---KGYWVSY------------------------ 225 (308)
T ss_dssp HHGGGCCSCCEEEEEECCSCTTTSGGGGS----HHHHHHHHTTEEE---EEEEEES------------------------
T ss_pred HHHhhhcccceeEEEeCCCCcccCcccCC----HHHHHHHHHHhCC---CcEEEEE------------------------
Confidence 6333 22 888774322 2233 3578999999999 8755433
Q ss_pred hhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceEEEEEEcC
Q 044482 300 MYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYWVIEFYKP 344 (345)
Q Consensus 300 ~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k~ 344 (345)
+ ....+++-|.+|||++.++...+.-..++.+.++
T Consensus 226 ----t------aag~VRR~L~~aGF~V~k~~G~g~KReml~A~~~ 260 (308)
T 3vyw_A 226 ----S------SSLSVRKSLLTLGFKVGSSREIGRKRKGTVASLK 260 (308)
T ss_dssp ----C------CCHHHHHHHHHTTCEEEEEECC---CEEEEEESS
T ss_pred ----e------CcHHHHHHHHHCCCEEEecCCCCCCCceeEEecC
Confidence 0 1244688999999998777655544566777654
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0045 Score=53.19 Aligned_cols=97 Identities=11% Similarity=0.066 Sum_probs=65.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-hhh---CC-----CceEEec-cCCcCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-IKN---AP-----CVEHVEG-DMFVNVP-SG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-i~~---a~-----ri~~~~g-d~~~~~p-~~ 235 (345)
...+.+.+- +....+||||||++|.++...+....-.+++++|+-.. -+. .+ .++|..+ |++.-.| ..
T Consensus 67 L~ei~ek~~-l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P~~~~s~gwn~v~fk~gvDv~~~~~~~~ 145 (267)
T 3p8z_A 67 LQWFVERNM-VIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEPVPMSTYGWNIVKLMSGKDVFYLPPEKC 145 (267)
T ss_dssp HHHHHHTTS-SCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCCTTTTSEEEECSCCGGGCCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCcchhhhcCcCceEEEeccceeecCCccc
Confidence 445666664 77778999999999999998888776668999998322 121 11 6999999 9876323 34
Q ss_pred CEEEeccccccCChh--HH---HHHHHHHHhhCCC
Q 044482 236 QAIFTKSVLLNWSDE--QC---LKILKNCYDALPK 265 (345)
Q Consensus 236 D~i~~~~vlh~~~d~--~~---~~iL~~~~~aL~p 265 (345)
|+++|--.= --+.. +. .++|.-+.+.|++
T Consensus 146 DtllcDIge-Ss~~~~vE~~RtlrvLela~~wL~~ 179 (267)
T 3p8z_A 146 DTLLCDIGE-SSPSPTVEESRTIRVLKMVEPWLKN 179 (267)
T ss_dssp SEEEECCCC-CCSCHHHHHHHHHHHHHHHGGGCSS
T ss_pred cEEEEecCC-CCCChhhhhhHHHHHHHHHHHhccc
Confidence 888874322 11111 22 3466666788888
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.01 Score=52.74 Aligned_cols=104 Identities=12% Similarity=0.106 Sum_probs=67.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhH-------hhhCC--CceEEec-cCCcCCC-CC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYV-------IKNAP--CVEHVEG-DMFVNVP-SG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~-------i~~a~--ri~~~~g-d~~~~~p-~~ 235 (345)
...+.+.+. +....+||||||++|.++...+....-.+++++|+-.. .++-. -+.+..+ |++.--| ..
T Consensus 83 L~ei~~~~~-l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P~~~~ql~w~lV~~~~~~Dv~~l~~~~~ 161 (321)
T 3lkz_A 83 LRWLVERRF-LEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEPQLVQSYGWNIVTMKSGVDVFYRPSECC 161 (321)
T ss_dssp HHHHHHTTS-CCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCCCCCCBTTGGGEEEECSCCTTSSCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCcchhhhcCCcceEEEeccCHhhCCCCCC
Confidence 345556555 66677999999999999998887776567999998222 11111 5788888 8766222 34
Q ss_pred CEEEeccccccCChh--HH---HHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 236 QAIFTKSVLLNWSDE--QC---LKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~--~~---~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
|+++|--. ---+.. +. .++|.-+.+.|++ + |.++|-
T Consensus 162 D~ivcDig-eSs~~~~ve~~Rtl~vLel~~~wL~~---~~~~f~~K 203 (321)
T 3lkz_A 162 DTLLCDIG-ESSSSAEVEEHRTIRVLEMVEDWLHR---GPREFCVK 203 (321)
T ss_dssp SEEEECCC-CCCSCHHHHHHHHHHHHHHHHHHHTT---CCCEEEEE
T ss_pred CEEEEECc-cCCCChhhhhhHHHHHHHHHHHHhcc---CCCcEEEE
Confidence 88887543 222221 22 3466666788888 6 666554
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0012 Score=75.35 Aligned_cols=150 Identities=14% Similarity=0.023 Sum_probs=66.8
Q ss_pred ccceEEecCCccHHHHHHHHHCCC-----CeEEEeeh-hhHhhhCC-C-----ceEEeccCCcC---CCCC-CEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQ-----ITGINFDL-PYVIKNAP-C-----VEHVEGDMFVN---VPSG-QAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~-----~~~~~~Dl-p~~i~~a~-r-----i~~~~gd~~~~---~p~~-D~i~~~~v 243 (345)
.-+||+||+|+|..+..+++...+ .+.+.-|. +...+.++ + ++...-|..++ .+.+ |+|+..++
T Consensus 1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~di~~~~~d~~~~~~~~~~~ydlvia~~v 1320 (2512)
T 2vz8_A 1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQLHVTQGQWDPANPAPGSLGKADLLVCNCA 1320 (2512)
T ss_dssp EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHHTEEEECCCSSCCCC-----CCEEEEECC
T ss_pred CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhcccccccccccccccCCCCceeEEEEccc
Confidence 358999999999887777766432 24566676 55566665 3 22211122222 1233 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
||.-++. ...|+++++.|+| ||++++. +......-.. ...+ .+.. .. .+....+.++|.++|+++|
T Consensus 1321 l~~t~~~--~~~l~~~~~lL~p---~G~l~~~-e~~~~~~~g~-~~~~----~~~~--~r-~~~~~~~~~~w~~~l~~~g 1386 (2512)
T 2vz8_A 1321 LATLGDP--AVAVGNMAATLKE---GGFLLLH-TLLAGHPLGE-MVGF----LTSP--EQ-GGRHLLSQDQWESLFAGAS 1386 (2512)
T ss_dssp -------------------------CCEEEEE-EC----------------------------------CTTTTSSTTTT
T ss_pred ccccccH--HHHHHHHHHhcCC---CcEEEEE-eccccccccc-cccc----cccc--cc-cCCcccCHHHHHHHHHhCC
Confidence 9865554 4679999999999 9999988 7532100000 0000 0000 00 0122346778999999999
Q ss_pred CCceEEEecCCceEEEEEEc
Q 044482 324 FGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 324 f~~~~~~~~~~~~~vi~~~k 343 (345)
|..+..........++..++
T Consensus 1387 f~~~~~~~~~~~~~~~~~~~ 1406 (2512)
T 2vz8_A 1387 LHLVALKRSFYGSVLFLCRQ 1406 (2512)
T ss_dssp EEEEEEEEETTSCEEEEEEE
T ss_pred CceeeeccCCCceEEEEEec
Confidence 98876643222334444443
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0099 Score=54.04 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=50.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-----CceEEeccCCc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-----CVEHVEGDMFV 230 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~ 230 (345)
..++++.+. ......+||..+|.|..+..|+++. |+.+++++|. |..++.++ |++++.++|-+
T Consensus 46 l~Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~rL~~~Rv~lv~~nF~~ 115 (347)
T 3tka_A 46 LDEAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSA 115 (347)
T ss_dssp THHHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHTTCCCTTEEEEESCGGG
T ss_pred HHHHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHhhcCCcEEEEeCCHHH
Confidence 456777777 6677899999999999999999984 7899999999 88887765 66666666543
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=95.87 E-value=0.042 Score=46.36 Aligned_cols=88 Identities=8% Similarity=0.003 Sum_probs=58.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------CceEEeccCCcC------------
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------CVEHVEGDMFVN------------ 231 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~~------------ 231 (345)
..+..+||+||+| ..+..+++ .++.+++.+|. ++..+.++ +|+++.||..+.
T Consensus 28 l~~a~~VLEiGtG--ySTl~lA~-~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~ 104 (202)
T 3cvo_A 28 YEEAEVILEYGSG--GSTVVAAE-LPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKW 104 (202)
T ss_dssp HHHCSEEEEESCS--HHHHHHHT-STTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTG
T ss_pred hhCCCEEEEECch--HHHHHHHH-cCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhh
Confidence 3456799999985 56666665 45778999997 55544332 588999996431
Q ss_pred ------------CC-CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 232 ------------VP-SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 232 ------------~p-~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
.+ .+ |+|++-.-- . ...+..+.+.|+| ||.| |+ |.+
T Consensus 105 ~~l~~~~~~i~~~~~~~~fDlIfIDg~k------~-~~~~~~~l~~l~~---GG~I-v~-DNv 155 (202)
T 3cvo_A 105 RSYPDYPLAVWRTEGFRHPDVVLVDGRF------R-VGCALATAFSITR---PVTL-LF-DDY 155 (202)
T ss_dssp GGTTHHHHGGGGCTTCCCCSEEEECSSS------H-HHHHHHHHHHCSS---CEEE-EE-TTG
T ss_pred hhHHHHhhhhhccccCCCCCEEEEeCCC------c-hhHHHHHHHhcCC---CeEE-EE-eCC
Confidence 22 13 999987521 1 2445557789999 8866 66 554
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.024 Score=50.54 Aligned_cols=88 Identities=18% Similarity=0.124 Sum_probs=62.2
Q ss_pred ccceEEecCCccHHHHHHHHHC-----CCCeEEEeeh----hh------------------------------HhhhC--
Q 044482 180 LKKLVDVASCLGANMSLIVNTY-----PQITGINFDL----PY------------------------------VIKNA-- 218 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~-----p~~~~~~~Dl----p~------------------------------~i~~a-- 218 (345)
...||++|+..|..+..+++.. |+.+++++|. |+ .++.+
T Consensus 107 pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~gl 186 (282)
T 2wk1_A 107 PGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYDL 186 (282)
T ss_dssp CCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTTC
T ss_pred CCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcCC
Confidence 5799999999999998887654 5778999994 11 01111
Q ss_pred --CCceEEeccCCcCCC---CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 219 --PCVEHVEGDMFVNVP---SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 219 --~ri~~~~gd~~~~~p---~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+|+++.||+.+.+| .+ |++++-.- + -+.....|..+...|+| || ++|+
T Consensus 187 ~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD---~-y~~~~~~Le~~~p~L~p---GG-iIv~ 242 (282)
T 2wk1_A 187 LDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD---L-YESTWDTLTNLYPKVSV---GG-YVIV 242 (282)
T ss_dssp CSTTEEEEESCHHHHSTTCCCCCEEEEEECCC---S-HHHHHHHHHHHGGGEEE---EE-EEEE
T ss_pred CcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC---c-cccHHHHHHHHHhhcCC---CE-EEEE
Confidence 279999999987544 22 77776542 1 12346789999999999 77 5566
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=95.35 E-value=0.023 Score=52.26 Aligned_cols=51 Identities=14% Similarity=0.137 Sum_probs=38.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh---h--CC-CceEEeccCCc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK---N--AP-CVEHVEGDMFV 230 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~---~--a~-ri~~~~gd~~~ 230 (345)
..+|||||.|.|.++..|+++....+++++++ +..++ . .. +++++.+|+++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~~~~~l~ii~~D~l~ 116 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 116 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhccCCCEEEEECCccc
Confidence 47899999999999999998743345777776 33322 1 12 89999999976
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.018 Score=53.26 Aligned_cols=100 Identities=13% Similarity=0.078 Sum_probs=68.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------CceEEeccCCc--CC-CCC-C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------CVEHVEGDMFV--NV-PSG-Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------ri~~~~gd~~~--~~-p~~-D 236 (345)
.....+|||+.+|.|.-+..+++..++..++..|. +.-++..+ ++.+...|... +. +.. |
T Consensus 146 ~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD 225 (359)
T 4fzv_A 146 LQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYD 225 (359)
T ss_dssp CCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEE
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCC
Confidence 55678999999999999999999887777899997 33222111 56777788765 22 233 8
Q ss_pred EEEec----c----c-------cccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 237 AIFTK----S----V-------LLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 237 ~i~~~----~----v-------lh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
.|++- . + ...|..++. .+||+++.+.||| ||+|+-. ..-+
T Consensus 226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkp---GG~LVYs-TCSl 287 (359)
T 4fzv_A 226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKP---GGHVVYS-TCSL 287 (359)
T ss_dssp EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEE---EEEEEEE-ESCC
T ss_pred EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCC---CcEEEEE-eCCC
Confidence 88762 1 1 222333322 4799999999999 9987766 4433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=94.34 E-value=0.035 Score=49.78 Aligned_cols=50 Identities=10% Similarity=0.159 Sum_probs=38.2
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
....+++.+. .....|||++||+|.++.++++. +.+++++|+ |.+++.|+
T Consensus 224 l~~~~i~~~~--~~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~ 274 (297)
T 2zig_A 224 LAERLVRMFS--FVGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAK 274 (297)
T ss_dssp HHHHHHHHHC--CTTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3445555543 34578999999999999998876 358999999 77777766
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.21 Score=48.61 Aligned_cols=105 Identities=10% Similarity=0.053 Sum_probs=66.4
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-------------CCCeEEEeeh-hhHhhhCC---------CceE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-------------PQITGINFDL-PYVIKNAP---------CVEH 223 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-------------p~~~~~~~Dl-p~~i~~a~---------ri~~ 223 (345)
+.-+++.++ -....+|+|-+||+|.++....+.. .+..+.++|+ +.+...|+ .-.+
T Consensus 206 v~lmv~l~~-p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~~~I 284 (530)
T 3ufb_A 206 VRFMVEVMD-PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEYPRI 284 (530)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSCCEE
T ss_pred HHHHHHhhc-cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCccccc
Confidence 344455555 3445699999999999998776532 1346889998 66555544 3456
Q ss_pred EeccCCc-CCC----C-C-CEEEeccccc-cCCh-------------hHHHHHHHHHHhhCC-------CCCCCcEEEEE
Q 044482 224 VEGDMFV-NVP----S-G-QAIFTKSVLL-NWSD-------------EQCLKILKNCYDALP-------KSRKHGRTQLR 275 (345)
Q Consensus 224 ~~gd~~~-~~p----~-~-D~i~~~~vlh-~~~d-------------~~~~~iL~~~~~aL~-------p~~~gG~lli~ 275 (345)
..+|.+. +.. . . |+|+.+=-+- .|.. +.....+.++.+.|+ | ||++.++
T Consensus 285 ~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~---gGr~avV 361 (530)
T 3ufb_A 285 DPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDN---GGRAAVV 361 (530)
T ss_dssp ECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSS---CCEEEEE
T ss_pred cccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCC---CceEEEE
Confidence 7788876 322 1 2 9998864431 1111 112346777777776 6 8998877
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=93.94 E-value=0.11 Score=46.25 Aligned_cols=92 Identities=11% Similarity=0.111 Sum_probs=61.8
Q ss_pred cccccceEEecC------CccHHHHHHHHHCCC-CeEEEeehhhHhhhCCCceEEeccCCc-CCCCC-CEEEeccc----
Q 044482 177 FKELKKLVDVAS------CLGANMSLIVNTYPQ-ITGINFDLPYVIKNAPCVEHVEGDMFV-NVPSG-QAIFTKSV---- 243 (345)
Q Consensus 177 ~~~~~~vlDiGg------G~G~~~~~l~~~~p~-~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~p~~-D~i~~~~v---- 243 (345)
.+...+|||+|+ -.|.+ .+.+..|+ ..++.+|+.++...+. .++.||+.+ ..... |+|++--.
T Consensus 107 vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~sda~--~~IqGD~~~~~~~~k~DLVISDMAPNtT 182 (344)
T 3r24_A 107 VPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFVSDAD--STLIGDCATVHTANKWDLIISDMYDPRT 182 (344)
T ss_dssp CCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCBCSSS--EEEESCGGGEEESSCEEEEEECCCCTTS
T ss_pred ecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccccCCC--eEEEccccccccCCCCCEEEecCCCCcC
Confidence 345689999995 77774 44455786 6899999966654432 458999776 22223 88876311
Q ss_pred ---cccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 244 ---LLNW--SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 244 ---lh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-++- ...-+..+|.=+.+.|+| ||.+++-
T Consensus 183 G~~D~d~~Rs~~L~ElALdfA~~~Lkp---GGsFvVK 216 (344)
T 3r24_A 183 KHVTKENDSKEGFFTYLCGFIKQKLAL---GGSIAVK 216 (344)
T ss_dssp CSSCSCCCCCCTHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CccccchhHHHHHHHHHHHHHHHhCcC---CCEEEEE
Confidence 1111 222467778888899999 9988887
|
| >3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.0061 Score=54.29 Aligned_cols=56 Identities=5% Similarity=-0.016 Sum_probs=44.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~~ 101 (345)
|.++| ...+.+.|+.|||+++|+ ....+.|+|+.|+..|++.++++ +|.+++..-.
T Consensus 35 IL~~l-~~~~~~ltl~eia~~lgl-------~ksTv~RlL~tL~~~G~v~~~~~~~Y~LG~~~~~ 91 (275)
T 3mq0_A 35 ILDLV-AGSPRDLTAAELTRFLDL-------PKSSAHGLLAVMTELDLLARSADGTLRIGPHSLR 91 (275)
T ss_dssp HHHHH-HHCSSCEEHHHHHHHHTC-------C--CHHHHHHHHHHTTSEEECTTSEEEECTHHHH
T ss_pred HHHHH-hhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEECCCCcEEehHHHHH
Confidence 77777 333457999999999999 67889999999999999998753 7999876543
|
| >3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP} | Back alignment and structure |
|---|
Probab=93.17 E-value=0.0082 Score=52.95 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=46.7
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.++| ...+.+.|+.|||+++|+ ....+.|+|+.|+..|++.+++ .+|++++..-.
T Consensus 11 IL~~l-~~~~~~lsl~eia~~lgl-------~ksT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~~~~ 68 (260)
T 3r4k_A 11 LLTYF-NHGRLEIGLSDLTRLSGM-------NKATVYRLMSELQEAGFVEQVEGARSYRLGPQVLR 68 (260)
T ss_dssp HHTTC-BTTBSEEEHHHHHHHHCS-------CHHHHHHHHHHHHHTTSEEECSSSSEEEECTTHHH
T ss_pred HHHHH-hhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEcCCCCcEEcCHHHHH
Confidence 67777 332347999999999999 6789999999999999999876 48999887654
|
| >2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=92.78 E-value=0.011 Score=51.93 Aligned_cols=56 Identities=5% Similarity=-0.121 Sum_probs=46.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++++ ....+.|+|+.|...|++++++..|++++....
T Consensus 19 iL~~l-~~~~~~~~~~eia~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~Y~Lg~~~~~ 74 (257)
T 2g7u_A 19 VLLAF-DAQRPNPTLAELATEAGL-------SRPAVRRILLTLQKLGYVAGSGGRWSLTPRVLS 74 (257)
T ss_dssp HHHTC-SSSCSSCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECGGGHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCEEEEcHHHHH
Confidence 66677 332347899999999999 678899999999999999987678999876643
|
| >2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A | Back alignment and structure |
|---|
Probab=92.62 E-value=0.0079 Score=41.23 Aligned_cols=54 Identities=6% Similarity=0.007 Sum_probs=41.9
Q ss_pred ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecC
Q 044482 34 GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLF 96 (345)
Q Consensus 34 ~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t 96 (345)
+.. |.++| ...+.++|..|||+++++ ....+.+.+..|...|++.... +.|.++
T Consensus 12 ~~~-IL~~L-~~~~~~~s~~eLA~~lgl-------sr~tv~~~l~~L~~~G~I~~~~~G~y~lg 66 (67)
T 2heo_A 12 EQK-ILQVL-SDDGGPVAIFQLVKKCQV-------PKKTLNQVLYRLKKEDRVSSPSPKYWSIG 66 (67)
T ss_dssp HHH-HHHHH-HHHCSCEEHHHHHHHHCS-------CHHHHHHHHHHHHHTTSEEEEETTEEEEC
T ss_pred HHH-HHHHH-HHcCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEecCCCceEeeC
Confidence 445 77777 332347999999999999 6789999999999999986643 367654
|
| >2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.0096 Score=52.64 Aligned_cols=56 Identities=11% Similarity=-0.041 Sum_probs=46.3
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++|+ ....+.|+|+.|...|++++++..|.+++..-.
T Consensus 26 iL~~l-~~~~~~~~~~eia~~~gl-------~~stv~r~l~tL~~~G~v~~~~~~Y~Lg~~~~~ 81 (265)
T 2ia2_A 26 VIRCF-DHRNQRRTLSDVARATDL-------TRATARRFLLTLVELGYVATDGSAFWLTPRVLE 81 (265)
T ss_dssp HHHTC-CSSCSSEEHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEESSSEEEECGGGGG
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCEEEEcHHHHH
Confidence 66777 332347999999999999 678899999999999999988778999876544
|
| >3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=91.82 E-value=0.94 Score=36.16 Aligned_cols=119 Identities=16% Similarity=0.105 Sum_probs=71.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-----hhHhhhCCCceEEec
Q 044482 152 LNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-----PYVIKNAPCVEHVEG 226 (345)
Q Consensus 152 ~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-----p~~i~~a~ri~~~~g 226 (345)
.+.|.+-|.+..... ...+.... .-..-|+|+|=|+|.+=-.+.+.+|+-++.++|. |..+.. .=.++.|
T Consensus 16 LDsfirRltaQR~~L-~~a~~~v~--~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~hp~~~P~--~e~~ilG 90 (174)
T 3iht_A 16 LDLFIDRMVSQRACL-EHAIAQTA--GLSGPVYELGLGNGRTYHHLRQHVQGREIYVFERAVASHPDSTPP--EAQLILG 90 (174)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHTT--TCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCCCGGGCCC--GGGEEES
T ss_pred HHHHHHHHHHHHHHH-HHHHHHhc--CCCCceEEecCCCChhHHHHHHhCCCCcEEEEEeeeccCCCCCCc--hHheecc
Confidence 356666666544432 23333332 2236899999999999999999999999999996 222221 3457888
Q ss_pred cCCcCCCC-----C-CEEEeccccccCChh----HHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 227 DMFVNVPS-----G-QAIFTKSVLLNWSDE----QCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 227 d~~~~~p~-----~-D~i~~~~vlh~~~d~----~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|+.+.+|. + .+.+...=|---..+ .+..+=.-+...|.| ||.++.- +.+
T Consensus 91 di~~tL~~~~~r~g~~a~LaHaD~G~g~~~~d~a~a~~lsplI~~~la~---GGi~vS~-~pl 149 (174)
T 3iht_A 91 DIRETLPATLERFGATASLVHADLGGHNREKNDRFARLISPLIEPHLAQ---GGLMVSS-DRM 149 (174)
T ss_dssp CHHHHHHHHHHHHCSCEEEEEECCCCSCHHHHHHHHHHHHHHHGGGEEE---EEEEEES-SCC
T ss_pred cHHHHHHHHHHhcCCceEEEEeecCCCCcchhHHHHHhhhHHHHHHhcC---CcEEEeC-Ccc
Confidence 88774442 3 444443333222222 223334446778889 7754444 554
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=91.59 E-value=0.11 Score=47.93 Aligned_cols=71 Identities=45% Similarity=0.874 Sum_probs=54.0
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhhh---------hc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHTA---------IG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~a---------~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
++|.++|+++..+|+....|...|...+. +. +.+.-.+||.++|.|..+..|+++.+-++++.+|.|..+
T Consensus 158 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 237 (364)
T 3p9c_A 158 AYGMSAFEYHGTDPRFNRVFNEGMKNHSIIITKKLLELYHGFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVI 237 (364)
T ss_dssp HHSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred hcCCCHHHHHHhCHHHHHHHHHHHHHhhHHHHHHHHHhcccccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecCHHHH
Confidence 56889999999999999999887754321 12 322456889999999999999999987777777666555
Q ss_pred c
Q 044482 74 E 74 (345)
Q Consensus 74 ~ 74 (345)
.
T Consensus 238 ~ 238 (364)
T 3p9c_A 238 S 238 (364)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.14 Score=47.24 Aligned_cols=72 Identities=44% Similarity=0.841 Sum_probs=53.8
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhhh---------hc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHTA---------IG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a---------~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
..+|.++|+++..+|+....|...|.-.+. +. +.+...+||.++|.|..+..|+++.+-++++.+|.|..
T Consensus 159 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~ 238 (368)
T 3reo_A 159 KAYGMNIFDYHGTDHRINKVFNKGMSSNSTITMKKILEMYNGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHV 238 (368)
T ss_dssp HHSSSCHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHhCCCHHHHHhhCHHHHHHHHHHHHhhhhhHHHHHHHhcccccCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEehHHH
Confidence 357899999999999999989887754321 11 22245688999999999999999998767777766555
Q ss_pred cc
Q 044482 73 IE 74 (345)
Q Consensus 73 l~ 74 (345)
+.
T Consensus 239 ~~ 240 (368)
T 3reo_A 239 IQ 240 (368)
T ss_dssp HT
T ss_pred HH
Confidence 44
|
| >2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A | Back alignment and structure |
|---|
Probab=91.44 E-value=0.019 Score=49.97 Aligned_cols=56 Identities=7% Similarity=0.006 Sum_probs=45.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe--EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV--VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~--~~y~~t~~s~~ 101 (345)
|.+.| ...+.+.|+.|||+++++ +...+.|+|+.|...|+++++. .+|++++....
T Consensus 11 iL~~l-~~~~~~~s~~ela~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~~~ 68 (241)
T 2xrn_A 11 IMRAL-GSHPHGLSLAAIAQLVGL-------PRSTVQRIINALEEEFLVEALGPAGGFRLGPALGQ 68 (241)
T ss_dssp HHHHH-HTCTTCEEHHHHHHHTTS-------CHHHHHHHHHHHHTTTSEEECGGGCEEEECSHHHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEeCCCCeEEECHHHHH
Confidence 56666 332346999999999999 6788999999999999998875 48999876544
|
| >3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.025 Score=41.42 Aligned_cols=62 Identities=5% Similarity=-0.019 Sum_probs=48.2
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++....++. |...| ..+ ++.|..+||+.+++ .+..+.+.|+.|...|++..... .|.+|+..
T Consensus 20 ~l~~~~~~~-il~~l-~~~-~~~s~~ela~~l~i-------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~ 85 (99)
T 3cuo_A 20 AMSHPKRLL-ILCML-SGS-PGTSAGELTRITGL-------SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEA 85 (99)
T ss_dssp HHCSHHHHH-HHHHH-TTC-CSEEHHHHHHHHCC-------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHH
T ss_pred HhCChHHHH-HHHHH-HhC-CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHH
Confidence 445556777 88888 543 36899999999999 67889999999999999977543 56666554
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=90.45 E-value=0.29 Score=44.82 Aligned_cols=70 Identities=23% Similarity=0.322 Sum_probs=54.8
Q ss_pred CchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccccc
Q 044482 7 LHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENA 76 (345)
Q Consensus 7 ~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rl 76 (345)
.++|+++.++|+....|...|.-. .+.++...-.++|.+||.|..+.+|+++.+-++++.+|.|..+...
T Consensus 140 ~~~~~~~~~~~~~~~~f~~aM~~~~~~~~~~~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dlp~v~~~a 218 (353)
T 4a6d_A 140 EELFTAIYRSEGERLQFMQALQEVWSVNGRSVLTAFDLSVFPLMCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTA 218 (353)
T ss_dssp SSHHHHHTSSHHHHHHHHHHHHTTHHHHHHHHHHSSCGGGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEECHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccCHHHHHHH
Confidence 458999999999999998877533 2334443455789999999999999999999899888888766543
|
| >1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=90.23 E-value=0.014 Score=41.34 Aligned_cols=55 Identities=5% Similarity=-0.062 Sum_probs=43.5
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccc-cccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH-VIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~-~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
|.++|-.. | +.|+.+||+.+++ .+. .+++-|..|...|++...+ +.|.+|+.+..
T Consensus 16 IL~~Lk~~-g-~~ta~eiA~~Lgi-------t~~~aVr~hL~~Le~eGlV~~~~~gRP~w~LT~~g~~ 74 (79)
T 1xmk_A 16 ICDYLFNV-S-DSSALNLAKNIGL-------TKARDINAVLIDMERQGDVYRQGTTPPIWHLTDKKRE 74 (79)
T ss_dssp HHHHHHHT-C-CEEHHHHHHHHCG-------GGHHHHHHHHHHHHHTTSEEEECSSSCEEEECHHHHT
T ss_pred HHHHHHHc-C-CcCHHHHHHHcCC-------CcHHHHHHHHHHHHHCCCEEecCCCCCCeEeCHhHHh
Confidence 55666333 3 6899999999999 577 8999999999999998654 37888876654
|
| >1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.025 Score=41.44 Aligned_cols=62 Identities=8% Similarity=-0.076 Sum_probs=49.6
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
++....++. |++.| . + +.+..+||+++++ .+..+.+.|+.|...|++.+..+.|.+|+.+..
T Consensus 27 ~l~~~~r~~-Il~~L-~--~-~~~~~eLa~~l~i-------s~~tv~~~L~~L~~~Glv~~~~g~y~l~~~g~~ 88 (96)
T 1y0u_A 27 AVTNPVRRK-ILRML-D--K-GRSEEEIMQTLSL-------SKKQLDYHLKVLEAGFCIERVGERWVVTDAGKI 88 (96)
T ss_dssp HHSCHHHHH-HHHHH-H--T-TCCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECTTTCC
T ss_pred HhCCHHHHH-HHHHH-c--C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEECCEEEECCCchH
Confidence 444555677 88888 3 2 5899999999999 578899999999999999765468888887654
|
| >1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2 | Back alignment and structure |
|---|
Probab=89.74 E-value=0.023 Score=49.59 Aligned_cols=55 Identities=9% Similarity=-0.081 Sum_probs=44.2
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-eEeeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-VVMYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~~~y~~t~~s~ 100 (345)
|.+.| ...+.+.|+.|||+++++ ....+.|+|+.|...|+++++ ...|.+++...
T Consensus 13 iL~~l-~~~~~~~~~~ela~~~gl-------~~stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 13 ILDFI-VKNPGDVSVSEIAEKFNM-------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHH-HHCSSCBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEECCCCcEEECHHHH
Confidence 66666 332346899999999999 678899999999999999887 44888887653
|
| >2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.027 Score=49.53 Aligned_cols=55 Identities=20% Similarity=0.150 Sum_probs=43.9
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~~s~ 100 (345)
|.+.|... +.+.|+.|||+++|+ ....+.|+|+.|...|+++++.. .|.+++...
T Consensus 28 iL~~l~~~-~~~~~~~eia~~~gl-------~kstv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 28 LLELFDAA-HPTRSLKELVEGTKL-------PKTTVVRLVATMCARSVLTSRADGSYSLGPEML 83 (260)
T ss_dssp HHTTCBTT-BSSBCHHHHHHHHCC-------CHHHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred HHHHHhhC-CCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEECCCCeEEecHHHH
Confidence 66777322 247999999999999 67889999999999999988744 788876543
|
| >2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A | Back alignment and structure |
|---|
Probab=88.53 E-value=0.11 Score=38.99 Aligned_cols=63 Identities=8% Similarity=0.019 Sum_probs=48.7
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
..++..-.++. |...| .. | +.+..|||+.+++ .+..+.+.|+.|...|+++.... .|.+++..
T Consensus 19 ~~al~~~~r~~-IL~~L-~~-~-~~s~~eLa~~lgi-------s~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~ 85 (108)
T 2kko_A 19 GKALANGRRLQ-ILDLL-AQ-G-ERAVEAIATATGM-------NLTTASANLQALKSGGLVEARREGTRQYYRIAGED 85 (108)
T ss_dssp HHHHTTSTTHH-HHHHH-TT-C-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHH
T ss_pred HHHhCCHHHHH-HHHHH-Hc-C-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 34555666788 88888 54 3 6899999999999 67889999999999999976542 56666543
|
| >2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.42 E-value=0.11 Score=40.28 Aligned_cols=47 Identities=15% Similarity=-0.017 Sum_probs=38.7
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE-e--EeeecCCCcc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID-V--VMYNLFPGAK 100 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~-~--~~y~~t~~s~ 100 (345)
+.+.|..+||+++++ .+..+.++|+.|...|+++.. + +.|.++.-..
T Consensus 24 ~~~~s~~ela~~~~i-------~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~ 73 (129)
T 2y75_A 24 EGPTSLKSIAQTNNL-------SEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPD 73 (129)
T ss_dssp SCCBCHHHHHHHTTS-------CHHHHHHHHHHHHHTTSEEEC----CCEEESSCGG
T ss_pred CCcCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEecCCCCCceEeCCCHH
Confidence 347899999999999 689999999999999999765 2 3688766543
|
| >1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A | Back alignment and structure |
|---|
Probab=88.39 E-value=0.028 Score=40.05 Aligned_cols=63 Identities=6% Similarity=0.052 Sum_probs=43.2
Q ss_pred hhhhccccccceeeccC-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCcc
Q 044482 30 HTAIGFEELNELVDVAG-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAK 100 (345)
Q Consensus 30 ~~a~~l~~lfd~L~~~g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~ 100 (345)
..-.+-. |.++|...+ |.++|+.+||+++|+ ....+.+.|.-|...|++...+. .|...+...
T Consensus 8 ~~~~~~~-IL~~L~~~~pg~~~t~~eLA~~Lgv-------sr~tV~~~L~~Le~~G~I~~~g~~~~~W~i~~~~~ 74 (81)
T 1qbj_A 8 YQDQEQR-ILKFLEELGEGKATTAHDLSGKLGT-------PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAVSTQ 74 (81)
T ss_dssp HHHHHHH-HHHHHHHHCTTCCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEESSSSCEEEEC----
T ss_pred chHHHHH-HHHHHHHcCCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCCeeEEeCcHH
Confidence 3334555 666663332 346899999999999 56789999999999999987642 666665543
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=88.02 E-value=1.2 Score=41.37 Aligned_cols=63 Identities=11% Similarity=0.180 Sum_probs=40.4
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHH---C----CCCeEEEeehhhHh
Q 044482 148 LPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNT---Y----PQITGINFDLPYVI 215 (345)
Q Consensus 148 ~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~---~----p~~~~~~~Dlp~~i 215 (345)
.|++.+.|.+.++..-.. +.+... .+..-+|+++|+|+|.++..+++. . ..++++++|..+.+
T Consensus 54 apeis~~FGe~la~~~~~----~w~~~g-~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~L 123 (387)
T 1zkd_A 54 SPEISQMFGELLGLWSAS----VWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVL 123 (387)
T ss_dssp HHHHCHHHHHHHHHHHHH----HHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHH
T ss_pred CCchHHHHHHHHHHHHHH----HHHHcC-CCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHH
Confidence 366667777766543221 112222 334457999999999999998865 2 34588999984433
|
| >3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=87.74 E-value=0.056 Score=39.61 Aligned_cols=61 Identities=5% Similarity=-0.012 Sum_probs=47.6
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++....++. |...| .. | +.|..+||+.+++ .+..+.+-|+.|...|+++.... .|++++..
T Consensus 19 ~l~~~~r~~-Il~~L-~~-~-~~~~~ela~~l~i-------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (98)
T 3jth_A 19 AMANERRLQ-ILCML-HN-Q-ELSVGELCAKLQL-------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEE 83 (98)
T ss_dssp HHCSHHHHH-HHHHT-TT-S-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHH
T ss_pred HcCCHHHHH-HHHHH-hc-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHH
Confidence 445556777 88888 55 3 6899999999999 57889999999999999976542 56666543
|
| >1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28 | Back alignment and structure |
|---|
Probab=87.63 E-value=0.031 Score=40.89 Aligned_cols=64 Identities=5% Similarity=-0.082 Sum_probs=49.0
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---E----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---V----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~----~y~~t~~s 99 (345)
.++....++. |+..|... + +.|..+||+.+++ .+..+.+.|+.|...|+++... + .|.+|+.+
T Consensus 11 ~~l~~~~~~~-iL~~L~~~-~-~~~~~ela~~l~i-------s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g 80 (100)
T 1ub9_A 11 HILGNPVRLG-IMIFLLPR-R-KAPFSQIQKVLDL-------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFG 80 (100)
T ss_dssp HHHHSHHHHH-HHHHHHHH-S-EEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHH
T ss_pred cccCChHHHH-HHHHHHhc-C-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHH
Confidence 4555666777 88877323 3 6899999999999 6788999999999999998643 1 56776665
Q ss_pred c
Q 044482 100 K 100 (345)
Q Consensus 100 ~ 100 (345)
.
T Consensus 81 ~ 81 (100)
T 1ub9_A 81 M 81 (100)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.57 E-value=0.66 Score=40.43 Aligned_cols=50 Identities=12% Similarity=0.126 Sum_probs=37.0
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP 219 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~ 219 (345)
....+++.+. .....|||..||+|+++.+..+. +.+++++|+ |..++.++
T Consensus 201 l~~~~i~~~~--~~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC--CCCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHH
Confidence 3445555443 34578999999999999998876 468999999 66666554
|
| >1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A | Back alignment and structure |
|---|
Probab=87.40 E-value=0.081 Score=40.65 Aligned_cols=63 Identities=6% Similarity=-0.044 Sum_probs=47.5
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++....++. |+..| ...+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 37 ~al~~~~rl~-IL~~L-~~~~-~~s~~eLa~~l~i-------s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 103 (122)
T 1u2w_A 37 KAIADENRAK-ITYAL-CQDE-ELCVCDIANILGV-------TIANASHHLRTLYKQGVVNFRKEGKLALYSLGDEH 103 (122)
T ss_dssp HHHHSHHHHH-HHHHH-HHSS-CEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEC----CCEEEESCHH
T ss_pred HHhCCHHHHH-HHHHH-HHCC-CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEECCEEEEEECHHH
Confidence 3445556778 88888 4223 6899999999999 67889999999999999976432 57776644
|
| >3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=86.86 E-value=0.071 Score=40.68 Aligned_cols=63 Identities=3% Similarity=-0.146 Sum_probs=50.2
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
.++..-..+. |...| ..| +.+..+||+.+++ .+..+.+-|+.|...|++..... .|++++...
T Consensus 13 ~al~~~~R~~-Il~~L-~~~--~~~~~eLa~~l~i-------s~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~ 79 (118)
T 3f6o_A 13 QALADPTRRA-VLGRL-SRG--PATVSELAKPFDM-------ALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPF 79 (118)
T ss_dssp HHHTSHHHHH-HHHHH-HTC--CEEHHHHHTTCCS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HHhCCHHHHH-HHHHH-HhC--CCCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHH
Confidence 4566667888 89888 543 6899999999999 57889999999999999976543 677777543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=86.83 E-value=0.35 Score=44.07 Aligned_cols=71 Identities=24% Similarity=0.367 Sum_probs=51.9
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|.-.+ .+.+..--.+||.++|.|..+..|+++.+-++++..|.+..+.
T Consensus 142 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 221 (348)
T 3lst_A 142 IFGSSLDAYFDGDAEVEALYYEGMETVSAAEHLILARAGDFPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVA 221 (348)
T ss_dssp HHSSCHHHHHTTCHHHHHHHHHHHHHHHHTTHHHHHHHSCCCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHHHHT
T ss_pred HhCCCHHHHHHhCHHHHHHHHHHHHHhhhhhHHHHHHhCCccCCceEEEECCccCHHHHHHHHHCCCCEEEEecCHHHhh
Confidence 4678899999999999999988775432 2233223468899988999999999998765666665555443
|
| >2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69 | Back alignment and structure |
|---|
Probab=86.44 E-value=0.22 Score=37.18 Aligned_cols=54 Identities=9% Similarity=0.031 Sum_probs=43.7
Q ss_pred ccceeeccCCCchhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
|...| .. | +.+..|||+.+ ++ .+..+.+.|+.|...|++++... .|.+|+.++.
T Consensus 19 IL~~L-~~-~-~~~~~eLa~~l~~i-------s~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~ 80 (107)
T 2hzt_A 19 ILXHL-TH-G-KKRTSELKRLMPNI-------TQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRS 80 (107)
T ss_dssp HHHHH-TT-C-CBCHHHHHHHCTTS-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGG
T ss_pred HHHHH-Hh-C-CCCHHHHHHHhcCC-------CHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHH
Confidence 45555 33 3 68999999999 88 68899999999999999977542 7999988865
|
| >3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A | Back alignment and structure |
|---|
Probab=86.42 E-value=0.074 Score=39.30 Aligned_cols=62 Identities=10% Similarity=0.031 Sum_probs=48.6
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++..-..+. |...| .+| +.+..+||+.+++ .+..+.+-|+.|...|++..... .|++|+..
T Consensus 18 ~~l~~~~r~~-Il~~L-~~~--~~~~~ela~~l~i-------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~ 83 (102)
T 3pqk_A 18 KTLSHPVRLM-LVCTL-VEG--EFSVGELEQQIGI-------GQPTLSQQLGVLRESGIVETRRNIKQIFYRLTEAK 83 (102)
T ss_dssp HHHCSHHHHH-HHHHH-HTC--CBCHHHHHHHHTC-------CTTHHHHHHHHHHHTTSEEEECSSSCCEEEECSST
T ss_pred HHcCCHHHHH-HHHHH-HhC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHH
Confidence 3455566777 88888 553 5899999999999 57789999999999999976532 67777754
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=86.00 E-value=0.36 Score=43.57 Aligned_cols=73 Identities=25% Similarity=0.399 Sum_probs=51.6
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|.-.+ .+.+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+.
T Consensus 127 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 206 (332)
T 3i53_A 127 RYGTSFWEDLGSDPVLSASFDTLMSHHLELDYTGIAAKYDWAALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDLQGPAS 206 (332)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHTTGGGSSCCGGGSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hhCCCHHHHHHhCHHHHHHHHHHHHHhHHhhHHHHHHhCCCCCCCEEEEeCCChhHHHHHHHHHCCCCeEEEecCHHHHH
Confidence 4578899999999999999988775332 1122223467888888899999999998765655555555444
Q ss_pred cc
Q 044482 75 NA 76 (345)
Q Consensus 75 rl 76 (345)
..
T Consensus 207 ~a 208 (332)
T 3i53_A 207 AA 208 (332)
T ss_dssp HH
T ss_pred HH
Confidence 33
|
| >2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=85.88 E-value=0.092 Score=39.43 Aligned_cols=62 Identities=8% Similarity=-0.007 Sum_probs=48.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
++.....+. |...| ..| +.+..+||+.+++ .+..+.+.|+.|...|++..... .|.+|+.+.
T Consensus 17 ~l~~~~r~~-IL~~L-~~~--~~~~~ela~~l~i-------s~~tv~~~l~~L~~~gli~~~~~gr~~~y~l~~~~~ 82 (114)
T 2oqg_A 17 ALSDETRWE-ILTEL-GRA--DQSASSLATRLPV-------SRQAIAKHLNALQACGLVESVKVGREIRYRALGAEL 82 (114)
T ss_dssp HTTCHHHHH-HHHHH-HHS--CBCHHHHHHHSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHH
T ss_pred HhCChHHHH-HHHHH-HcC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeeEEecCCEEEEEechHHH
Confidence 344455677 88888 543 5899999999999 67889999999999999976543 477776553
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=0.72 Score=46.25 Aligned_cols=32 Identities=16% Similarity=0.257 Sum_probs=24.5
Q ss_pred ccceEEecCCccHHHHHHHHHC-------CC-----CeEEEeeh
Q 044482 180 LKKLVDVASCLGANMSLIVNTY-------PQ-----ITGINFDL 211 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~-------p~-----~~~~~~Dl 211 (345)
.-+|+|+|-|+|.......+.+ |+ ++++.++.
T Consensus 59 ~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 102 (689)
T 3pvc_A 59 SCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEK 102 (689)
T ss_dssp EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred ceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeC
Confidence 4589999999999888876653 33 56788775
|
| >1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A | Back alignment and structure |
|---|
Probab=85.45 E-value=0.14 Score=38.17 Aligned_cols=62 Identities=10% Similarity=-0.009 Sum_probs=47.7
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
.++..-.++. |+..| ..+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 21 ~~l~~~~r~~-IL~~L-~~~--~~~~~ela~~l~i-------s~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~ 86 (106)
T 1r1u_A 21 KALGDYNRIR-IMELL-SVS--EASVGHISHQLNL-------SQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIH 86 (106)
T ss_dssp HHTCSHHHHH-HHHHH-HHC--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HHhCCHHHHH-HHHHH-HhC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 3455566788 88888 543 5899999999999 67889999999999999976543 56665543
|
| >3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua} | Back alignment and structure |
|---|
Probab=85.42 E-value=0.18 Score=40.73 Aligned_cols=47 Identities=13% Similarity=0.006 Sum_probs=39.6
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ ++..++++|..|...|++.... +.|.++.-.+.
T Consensus 43 ~~~s~~eIA~~~~i-------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~e 92 (159)
T 3lwf_A 43 GPISLRSIAQDKNL-------SEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDPEK 92 (159)
T ss_dssp CCBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEECSTTCEEEECSCTTT
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCeEEEecCCCCceEecCCHHH
Confidence 47899999999999 7899999999999999997654 37888765544
|
| >4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A | Back alignment and structure |
|---|
Probab=85.36 E-value=0.27 Score=38.29 Aligned_cols=47 Identities=11% Similarity=0.001 Sum_probs=41.1
Q ss_pred chhHHHHHHHc-CCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCcccc
Q 044482 49 GVNMSLIVNTY-SQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKER 102 (345)
Q Consensus 49 ~~t~~eLA~~~-~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~l 102 (345)
+.+..||++.+ ++ .+..|.+.|+.|...|++++... .|++|+.++.+
T Consensus 39 ~~rf~eL~~~l~gI-------s~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l 93 (131)
T 4a5n_A 39 KKRFNEFRRICPSI-------TQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTL 93 (131)
T ss_dssp CBCHHHHHHHCTTS-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGG
T ss_pred CcCHHHHHHHhccc-------CHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHH
Confidence 68999999999 88 57899999999999999987642 79999999864
|
| >1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=85.31 E-value=0.12 Score=36.20 Aligned_cols=56 Identities=7% Similarity=0.069 Sum_probs=41.5
Q ss_pred ccccccceeeccC-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCC
Q 044482 34 GFEELNELVDVAG-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFP 97 (345)
Q Consensus 34 ~l~~lfd~L~~~g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~ 97 (345)
+.. |.++|...+ |.+.|+.|||+++++ ....+.+.|..|...|++...++ .|..++
T Consensus 16 ~~~-IL~~L~~~~~~~~~t~~eLA~~Lgv-------s~~tV~~~L~~L~~~G~I~~~g~~~~~W~i~~ 75 (77)
T 1qgp_A 16 EQR-ILKFLEELGEGKATTAHDLSGKLGT-------PKKEINRVLYSLAKKGKLQKEAGTPPLWKIAV 75 (77)
T ss_dssp HHH-HHHHHHHHCSSSCEEHHHHHHHHCC-------CHHHHHHHHHHHHHHTSEEEECSSSCEEEECC
T ss_pred HHH-HHHHHHHcCCCCCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEecCCCCCceEecC
Confidence 445 666663332 346899999999999 56789999999999999987652 565544
|
| >2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.11 E-value=0.084 Score=37.34 Aligned_cols=48 Identities=8% Similarity=-0.063 Sum_probs=37.8
Q ss_pred ccccccceeeccCC-CchhHHHHHHHc-----CCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 34 GFEELNELVDVAGG-LGVNMSLIVNTY-----SQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 34 ~l~~lfd~L~~~gg-~~~t~~eLA~~~-----~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
+.. |.+.| ...+ .+.|++||++++ ++ ...-+.|.|+.|...|++.+..
T Consensus 19 r~~-IL~~l-~~~~~~~~s~~el~~~l~~~~~~i-------s~~TVyR~L~~L~~~Glv~~~~ 72 (83)
T 2fu4_A 19 RLK-ILEVL-QEPDNHHVSAEDLYKRLIDMGEEI-------GLATVYRVLNQFDDAGIVTRHN 72 (83)
T ss_dssp HHH-HHHHH-TSGGGSSBCHHHHHHHHHHTTCCC-------CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHH-HHHHH-HhCCCCCCCHHHHHHHHHHhCCCC-------CHhhHHHHHHHHHHCCCeEEEe
Confidence 445 77777 3322 378999999999 77 5788999999999999998753
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=1.1 Score=44.87 Aligned_cols=31 Identities=19% Similarity=0.293 Sum_probs=23.7
Q ss_pred cceEEecCCccHHHHHHHHHC-------CC-----CeEEEeeh
Q 044482 181 KKLVDVASCLGANMSLIVNTY-------PQ-----ITGINFDL 211 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~-------p~-----~~~~~~Dl 211 (345)
-+|+|+|-|+|.......+.+ |+ ++++.++.
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~ 110 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEK 110 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEES
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeC
Confidence 589999999999888776653 33 45788875
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=84.65 E-value=3.9 Score=31.50 Aligned_cols=85 Identities=11% Similarity=0.001 Sum_probs=51.3
Q ss_pred cceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcC--C---C--CCCEEEeccccccCC-
Q 044482 181 KKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVN--V---P--SGQAIFTKSVLLNWS- 248 (345)
Q Consensus 181 ~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~--~---p--~~D~i~~~~vlh~~~- 248 (345)
.+|+=+|+|. |......+.+. +.+++++|. ++.++.++ ++.++.||..++ + . ..|++++. .+
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~-g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~-----~~~ 81 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLAS-DIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILT-----IPN 81 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHT-TCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEEC-----CSC
T ss_pred CCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEE-----CCC
Confidence 5788888865 44444444443 468999998 66666554 788899998762 1 1 23777654 23
Q ss_pred hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 249 DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 249 d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+++...+.. ..+.+.| +.+++..
T Consensus 82 ~~~n~~~~~-~a~~~~~---~~~iiar 104 (140)
T 3fwz_A 82 GYEAGEIVA-SARAKNP---DIEIIAR 104 (140)
T ss_dssp HHHHHHHHH-HHHHHCS---SSEEEEE
T ss_pred hHHHHHHHH-HHHHHCC---CCeEEEE
Confidence 333333444 4556677 6776655
|
| >3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A | Back alignment and structure |
|---|
Probab=83.75 E-value=0.21 Score=39.57 Aligned_cols=47 Identities=13% Similarity=-0.012 Sum_probs=39.5
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---EeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..++++|..|...|++.... +.|.++.-.+.
T Consensus 27 ~~~s~~~IA~~~~i-------~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (143)
T 3t8r_A 27 GCISLKSIAEENNL-------SDLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAEE 76 (143)
T ss_dssp CCEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCEEEecCCCCCCeeecCCccc
Confidence 47999999999999 7899999999999999997553 37888765544
|
| >2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A | Back alignment and structure |
|---|
Probab=83.70 E-value=0.17 Score=36.84 Aligned_cols=46 Identities=7% Similarity=0.013 Sum_probs=38.7
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
+.|..+||+++++ ++..+.++++.|...|++....+ .|.+|+.+..
T Consensus 30 ~~t~~eLa~~l~i-------~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~~G~~ 79 (95)
T 2qvo_A 30 DVYIQYIASKVNS-------PHSYVWLIIKKFEEAKMVECELEGRTKIIRLTDKGQK 79 (95)
T ss_dssp CEEHHHHHHHSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCcCccCCCCCCeEEEEEChhHHH
Confidence 4899999999999 68899999999999999944333 6888887765
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=83.46 E-value=1.2 Score=41.60 Aligned_cols=40 Identities=13% Similarity=0.199 Sum_probs=32.5
Q ss_pred ccccceEEecCCccHHHHHHH-HHCCC-CeEEEeeh-hhHhhh
Q 044482 178 KELKKLVDVASCLGANMSLIV-NTYPQ-ITGINFDL-PYVIKN 217 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~-~~~p~-~~~~~~Dl-p~~i~~ 217 (345)
.+..+++|||++.|.++..++ +..+. .+++.++. |...+.
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~ 267 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQT 267 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHH
Confidence 456789999999999999988 66775 79999997 665443
|
| >1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19 | Back alignment and structure |
|---|
Probab=83.04 E-value=0.08 Score=37.60 Aligned_cols=53 Identities=6% Similarity=-0.046 Sum_probs=41.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCcc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAK 100 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~ 100 (345)
|.++| ... +.|+.|||+++|+ ....+++.|..|...|++....+ .|.++..+.
T Consensus 22 IL~lL-~~~--g~sa~eLAk~Lgi-------Sk~aVr~~L~~Le~eG~I~~~~~~PP~W~~~~~~~ 77 (82)
T 1oyi_A 22 AIKTI-GIE--GATAAQLTRQLNM-------EKREVNKALYDLQRSAMVYSSDDIPPRWFMTTEAD 77 (82)
T ss_dssp HHHHH-SSS--TEEHHHHHHHSSS-------CHHHHHHHHHHHHHHTSSEECSSSSCEEESCC---
T ss_pred HHHHH-HHc--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeCCCCCCcceeccCcc
Confidence 66677 332 3899999999999 57889999999999999987643 777776543
|
| >3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=82.88 E-value=0.37 Score=38.99 Aligned_cols=47 Identities=19% Similarity=0.041 Sum_probs=40.0
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~t~~s~~ 101 (345)
.++|.++||+++++ .+..+++++..|...|+++-..+ .|.+..-...
T Consensus 27 ~~~s~~~IA~~~~i-------s~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~~ 76 (162)
T 3k69_A 27 SKVASRELAQSLHL-------NPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLALAD 76 (162)
T ss_dssp SCBCHHHHHHHHTS-------CGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEeecCCCCCeEecCChhh
Confidence 47899999999999 78999999999999999966533 7988766654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=82.82 E-value=1.1 Score=41.10 Aligned_cols=72 Identities=43% Similarity=0.814 Sum_probs=44.3
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhc-cccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIG-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
..+|.++|+++.++|+....|...|.-.. .+. +..--.+||.++|.|..+..|+++.+-++++..|.|..
T Consensus 165 ~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~~~~ 244 (372)
T 1fp1_D 165 NVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQV 244 (372)
T ss_dssp ---------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHH
T ss_pred HHhCCCHHHHHHhCHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeChHHH
Confidence 35688899999999999998987764321 111 22134678988888999999999987656665555544
Q ss_pred cc
Q 044482 73 IE 74 (345)
Q Consensus 73 l~ 74 (345)
+.
T Consensus 245 ~~ 246 (372)
T 1fp1_D 245 IE 246 (372)
T ss_dssp HT
T ss_pred HH
Confidence 43
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=82.72 E-value=0.55 Score=42.87 Aligned_cols=71 Identities=31% Similarity=0.568 Sum_probs=50.7
Q ss_pred cCCCchhhhhhcCHHHHH--HHHHHHHHhh--------hh--ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccc
Q 044482 4 HNGLHLFDYASKDARLQN--LFNQSMHNHT--------AI--GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH 71 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~--~f~~~~~l~~--------a~--~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~ 71 (345)
.+|.++|+++.++|+... .|...|+-.+ .+ .+...-.+||.++|.|..+..|+++.+-++.+..|.+.
T Consensus 148 ~~g~~~~~~~~~~p~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~ 227 (358)
T 1zg3_A 148 ATGESFWDFLNKDSESSTLSMFQDAMASDSRMFKLVLQENKRVFEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQ 227 (358)
T ss_dssp HHSSCHHHHHTSGGGHHHHHHHHHHHHHHHHTHHHHHHHTHHHHHTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECHH
T ss_pred HhCCCHHHHHhcChhhhhHHHHHHHHhcccHHHHHHHHhcchhccCCCEEEEECCCcCHHHHHHHHHCCCCeEEEeccHH
Confidence 357889999999999998 8877765322 11 12113568899888999999999998765666665554
Q ss_pred ccc
Q 044482 72 VIE 74 (345)
Q Consensus 72 ~l~ 74 (345)
.+.
T Consensus 228 ~~~ 230 (358)
T 1zg3_A 228 VVG 230 (358)
T ss_dssp HHS
T ss_pred HHh
Confidence 443
|
| >1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A | Back alignment and structure |
|---|
Probab=82.69 E-value=0.11 Score=38.18 Aligned_cols=45 Identities=11% Similarity=-0.057 Sum_probs=42.3
Q ss_pred hhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeEeeecCCCccc
Q 044482 50 VNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKE 101 (345)
Q Consensus 50 ~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~~y~~t~~s~~ 101 (345)
++..+||..+++ .++.+...++.|...|++++..+.|.+|+.+..
T Consensus 21 ~~~t~La~~~~l-------s~~~~~~~l~~L~~~GLI~~~~~~~~LT~kG~~ 65 (95)
T 1r7j_A 21 SPKTRIMYGANL-------SYALTGRYIKMLMDLEIIRQEGKQYMLTKKGEE 65 (95)
T ss_dssp BCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEETTEEEECHHHHH
T ss_pred CCHHHHHHHhCc-------CHHHHHHHHHHHHHCCCeEEECCeeEEChhHHH
Confidence 789999999999 799999999999999999998888999999987
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=82.67 E-value=0.72 Score=42.35 Aligned_cols=75 Identities=28% Similarity=0.539 Sum_probs=52.6
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIE 74 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~ 74 (345)
.+|.++|+++.++|+....|...|... ..+.+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+.
T Consensus 160 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~~ 239 (369)
T 3gwz_A 160 ANGTSFWQLTHEDPKARELFNRAMGSVSLTEAGQVAAAYDFSGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLERPPVAE 239 (369)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHH
T ss_pred hcCCCHHHHHHhCHHHHHHHHHHHHHHHhhhHHHHHHhCCCccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcCHHHHH
Confidence 357789999999999999998766532 22233224568899988999999999998765665555555444
Q ss_pred ccCC
Q 044482 75 NASS 78 (345)
Q Consensus 75 rlL~ 78 (345)
..-+
T Consensus 240 ~a~~ 243 (369)
T 3gwz_A 240 EARE 243 (369)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=82.40 E-value=0.75 Score=41.85 Aligned_cols=71 Identities=31% Similarity=0.639 Sum_probs=49.7
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHhhhh----------ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~----------~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
.+|.++|+++.++|+....|...|.-.+.. .+...-.+||.++|.|..+..|+++.+-.+.+..|.|..+
T Consensus 145 ~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 224 (352)
T 1fp2_A 145 TLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVV 224 (352)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred HcCCCHHHHHHhChHHHHHHHHHHHhcchhhhhHHHhcccccccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeCHHHH
Confidence 357889999999999999998877533211 1221346789988889999999999865455555554444
Q ss_pred c
Q 044482 74 E 74 (345)
Q Consensus 74 ~ 74 (345)
.
T Consensus 225 ~ 225 (352)
T 1fp2_A 225 E 225 (352)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A | Back alignment and structure |
|---|
Probab=82.30 E-value=0.14 Score=40.01 Aligned_cols=60 Identities=13% Similarity=0.084 Sum_probs=41.6
Q ss_pred hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 32 AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 32 a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
..++. +...|... + +.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 37 ~~~~~-vL~~l~~~-~-~~t~~eLa~~l~~-------~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~ 103 (142)
T 3ech_A 37 PPDVH-VLKLIDEQ-R-GLNLQDLGRQMCR-------DKALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLA 103 (142)
T ss_dssp HHHHH-HHHHHHHT-T-TCCHHHHHHHHC----------CHHHHHHHHHHHTTSEEC----------CCEECHHHHH
T ss_pred HHHHH-HHHHHHhC-C-CcCHHHHHHHhCC-------CHHHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHH
Confidence 44555 66677333 3 6899999999999 68899999999999999976432 4566666654
|
| >3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP} | Back alignment and structure |
|---|
Probab=81.63 E-value=0.15 Score=40.81 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=49.7
Q ss_pred HHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCcc
Q 044482 27 MHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAK 100 (345)
Q Consensus 27 ~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~ 100 (345)
.+|..-.++. |...| .. + +.++.+||+.+++ .+..+.+-|+.|...|+++.... .|++|+...
T Consensus 53 ~aL~~p~R~~-IL~~L-~~-~-~~t~~eLa~~lgl-------s~stvs~hL~~L~~aGlV~~~~~Gr~~~y~lt~~~~ 119 (151)
T 3f6v_A 53 EVAAEPTRRR-LVQLL-TS-G-EQTVNNLAAHFPA-------SRSAISQHLRVLTEAGLVTPRKDGRFRYYRLDPQGL 119 (151)
T ss_dssp HHHTSHHHHH-HHHHG-GG-C-CEEHHHHHTTSSS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHhCCHHHHH-HHHHH-Hh-C-CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHH
Confidence 4555666788 99899 54 3 6899999999999 57889999999999999976543 677776543
|
| >1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=81.51 E-value=0.092 Score=38.45 Aligned_cols=55 Identities=7% Similarity=-0.013 Sum_probs=41.8
Q ss_pred ccceeeccCCCchhHHHH----HHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 38 LNELVDVAGGLGVNMSLI----VNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eL----A~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
++..| ...+ +.+..+| |+.+++ .+..+.++++.|...|++++..+ .|.+|+.++.
T Consensus 13 iL~~l-~~~~-~~~~~el~~~la~~l~i-------s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~ 75 (99)
T 1tbx_A 13 VLAYL-YDNE-GIATYDLYKKVNAEFPM-------STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKL 75 (99)
T ss_dssp HHHHH-TTCT-TCBHHHHHHHHHTTSCC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHH-HHcC-CcCHHHHHHHHHHHcCC-------CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHH
Confidence 55556 3322 5899999 888899 68899999999999999987543 5666766655
|
| >2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48 | Back alignment and structure |
|---|
Probab=81.36 E-value=0.25 Score=35.78 Aligned_cols=46 Identities=7% Similarity=0.074 Sum_probs=38.4
Q ss_pred chhHHHHHHHcCCCcccCCCcccc-ccccCCCCccCceeeEEeE-----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHV-IENASSSPVSRNISTIDVV-----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~-l~rlL~~L~~~gl~~~~~~-----~y~~t~~s~~ 101 (345)
+.|..+||+.+++ .+.. +.++++.|...|++..+.. .+.+|+.++.
T Consensus 30 ~~t~~eLa~~l~i-------s~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~~ 81 (95)
T 2pg4_A 30 EPSLAEIVKASGV-------SEKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGRR 81 (95)
T ss_dssp CCCHHHHHHHHCC-------CHHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCC-------CchHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHHH
Confidence 5899999999999 6788 9999999999999984422 5777777765
|
| >3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0 | Back alignment and structure |
|---|
Probab=80.91 E-value=0.094 Score=40.73 Aligned_cols=61 Identities=8% Similarity=-0.084 Sum_probs=45.7
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...|...++.+.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 32 ~~~~-vL~~l~~~~~~~~t~~ela~~l~~-------~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~ 99 (139)
T 3eco_A 32 EQGH-TLGYLYAHQQDGLTQNDIAKALQR-------TGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIK 99 (139)
T ss_dssp HHHH-HHHHHHHSTTTCEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHH
T ss_pred HHHH-HHHHHHhcCCCCcCHHHHHHHhCC-------CcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHH
Confidence 3455 666663333247999999999999 68899999999999999987532 5666666655
|
| >1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A | Back alignment and structure |
|---|
Probab=80.62 E-value=0.24 Score=38.00 Aligned_cols=61 Identities=8% Similarity=0.012 Sum_probs=47.0
Q ss_pred HHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCc
Q 044482 28 HNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGA 99 (345)
Q Consensus 28 ~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s 99 (345)
++..-.++. |+..| ..+ +.+..+||+.+++ .+..+.+.|+.|...|++..... .|++++..
T Consensus 42 aL~~~~rl~-IL~~L-~~~--~~s~~ela~~lgi-------s~stvs~~L~~Le~~Glv~~~~~gr~~~y~l~~~~ 106 (122)
T 1r1t_A 42 VLADPNRLR-LLSLL-ARS--ELCVGDLAQAIGV-------SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQDHH 106 (122)
T ss_dssp HHCCHHHHH-HHHHH-TTC--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHH
T ss_pred HhCCHHHHH-HHHHH-HcC--CCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHH
Confidence 444555778 88888 543 5899999999999 57889999999999999976532 56666543
|
| >3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A | Back alignment and structure |
|---|
Probab=80.43 E-value=0.11 Score=40.59 Aligned_cols=59 Identities=7% Similarity=-0.045 Sum_probs=45.3
Q ss_pred hccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 33 IGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 33 ~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.++. +...| ... ++.|..+||+.+++ .+..+.++++.|...|++++..+ .+.+|+.++.
T Consensus 37 ~q~~-vL~~l-~~~-~~~t~~eLa~~l~~-------~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (140)
T 3hsr_A 37 TGYI-VLMAI-END-EKLNIKKLGERVFL-------DSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA 102 (140)
T ss_dssp HHHH-HHHHS-CTT-CEEEHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHHH-HHHHH-HHc-CCcCHHHHHHHHCC-------ChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHH
Confidence 3455 56667 332 37999999999999 68899999999999999987532 5777777765
|
| >1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55 | Back alignment and structure |
|---|
Probab=80.30 E-value=0.29 Score=38.89 Aligned_cols=47 Identities=13% Similarity=0.036 Sum_probs=39.1
Q ss_pred CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEE--eEeeecCCCccc
Q 044482 48 LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTID--VVMYNLFPGAKE 101 (345)
Q Consensus 48 ~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~--~~~y~~t~~s~~ 101 (345)
.+.|.++||+++++ .+..+++++..|...|+++.. .+.|.++.-.+.
T Consensus 29 ~~~~~~~iA~~~~i-------~~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~~ 77 (149)
T 1ylf_A 29 SLCTSDYMAESVNT-------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLHE 77 (149)
T ss_dssp GGCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCGGG
T ss_pred CCcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCcEEEccCCCceEeCCChhh
Confidence 47899999999999 789999999999999999764 347888766544
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.29 E-value=1.1 Score=40.19 Aligned_cols=68 Identities=22% Similarity=0.356 Sum_probs=47.4
Q ss_pred cCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 4 HNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 4 ~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
.+|.++|+++.++|+....|...| -. ..+.+.+ -.+||.++|.|.....|+++.+-.+.+..|.+..+
T Consensus 127 ~~g~~~~~~~~~~~~~~~~f~~~m-~~~~~~~~~~~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~~~~ 203 (334)
T 2ip2_A 127 AFGEDFYSYLKRCPDAGRRFLLAM-KASNLAFHEIPRLLDFRG-RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSL 203 (334)
T ss_dssp HHSSCHHHHHHHCHHHHHHHHHHH-GGGHHHHHHHHHHSCCTT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEECTTCT
T ss_pred hcCCCHHHHHhhChHHHHHHHHHH-HHHHHHHHHHHHhCCCCC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCcHHHH
Confidence 357889999999999999998877 22 1122332 46788888888899999998765444444444333
|
| >2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=80.19 E-value=0.15 Score=36.65 Aligned_cols=44 Identities=5% Similarity=0.041 Sum_probs=36.8
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|.++|... | .++++|||+.+++ .+.-++|.|+.|...|++.+..
T Consensus 7 Il~~L~~~-g-~vsv~eLA~~l~V-------S~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 7 VRDMLALQ-G-RMEAKQLSARLQT-------PQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHS-C-SEEHHHHHHHTTC-------CHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHc-C-CCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEEEe
Confidence 55666333 3 5999999999999 6889999999999999998764
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=80.10 E-value=6.9 Score=36.01 Aligned_cols=92 Identities=12% Similarity=0.073 Sum_probs=60.6
Q ss_pred ceEEecCCccHHHHHHHHHCCCCe-EEEeeh-hhHhhhCC----CceEEeccCCcC----C-----C-CC-CEEEecccc
Q 044482 182 KLVDVASCLGANMSLIVNTYPQIT-GINFDL-PYVIKNAP----CVEHVEGDMFVN----V-----P-SG-QAIFTKSVL 244 (345)
Q Consensus 182 ~vlDiGgG~G~~~~~l~~~~p~~~-~~~~Dl-p~~i~~a~----ri~~~~gd~~~~----~-----p-~~-D~i~~~~vl 244 (345)
+++|+-||.|.++..+.++. .+ +..+|. +..++..+ ...++.+|+.+- + + .. |+++..--+
T Consensus 4 ~vidLFsG~GGlslG~~~aG--~~~v~avE~d~~a~~t~~~N~~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggpPC 81 (376)
T 3g7u_A 4 NVIDLFSGVGGLSLGAARAG--FDVKMAVEIDQHAINTHAINFPRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGPPC 81 (376)
T ss_dssp EEEEETCTTSHHHHHHHHHT--CEEEEEECSCHHHHHHHHHHCTTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECCCC
T ss_pred eEEEEccCcCHHHHHHHHCC--CcEEEEEeCCHHHHHHHHHhCCCCceEecChhhcCHHHHHhhcccCCCeeEEEecCCC
Confidence 69999999999999999884 44 457777 44444322 567788888762 1 2 23 999988777
Q ss_pred ccCCh-------hHHHHHHH---HHHhhCCCCCCCcEEEEEeccCCC
Q 044482 245 LNWSD-------EQCLKILK---NCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 245 h~~~d-------~~~~~iL~---~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
..|+- +..-.++. ++.+.++| +++++ |.|..
T Consensus 82 Q~fS~ag~~~~~d~r~~L~~~~~~~v~~~~P-----~~~v~-ENV~g 122 (376)
T 3g7u_A 82 QGFSSIGKGNPDDSRNQLYMHFYRLVSELQP-----LFFLA-ENVPG 122 (376)
T ss_dssp CTTC-------CHHHHHHHHHHHHHHHHHCC-----SEEEE-EECTT
T ss_pred CCcccccCCCCCCchHHHHHHHHHHHHHhCC-----CEEEE-ecchH
Confidence 76652 11222332 35556688 68888 77644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 345 | ||||
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 1e-44 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 5e-13 | |
| d1fp1d2 | 244 | c.66.1.12 (D:129-372) Chalcone O-methyltransferase | 2e-09 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 2e-41 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 8e-13 | |
| d1fp2a2 | 244 | c.66.1.12 (A:109-352) Isoflavone O-methyltransfera | 6e-06 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 1e-39 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 2e-11 | |
| d1kyza2 | 243 | c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferuli | 6e-11 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-15 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 2e-08 | |
| d1qzza2 | 256 | c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase | 4e-05 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-12 | |
| d1tw3a2 | 253 | c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransf | 2e-06 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 151 bits (382), Expect = 1e-44
Identities = 82/204 (40%), Positives = 121/204 (59%), Gaps = 9/204 (4%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
++ M +FN+SM + A MK++LEIY GF+ + LVDV G N+ LI++ YP
Sbjct: 46 FMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPL 105
Query: 204 ITGINFDLPYVIKN---APCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I GINFDLP VI+N +EHV GDMF +VP G A+ K+V NWSDE+C++ L NC+
Sbjct: 106 IKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLSNCH 165
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
AL + K + LPE P S ++ + TLD +M+ + + RT +++ L+
Sbjct: 166 KALSPNGKVIIVE----FILPEEPNTSEESKLVSTLDNLMF-ITVGGRERTEKQYEKLSK 220
Query: 321 AAGFGTIKVICRSY-CYWVIEFYK 343
+GF +V CR++ V+EFYK
Sbjct: 221 LSGFSKFQVACRAFNSLGVMEFYK 244
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 65.5 bits (159), Expect = 5e-13
Identities = 36/89 (40%), Positives = 51/89 (57%), Gaps = 11/89 (12%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
H G+ +++ KD ++ +FN+SM + A GFE ++ LVDV GG G N
Sbjct: 37 NVH-GVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRN 95
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSP 80
+ LI++ Y I+GINFDLP VIENA
Sbjct: 96 LELIISKYPLIKGINFDLPQVIENAPPLS 124
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 55.5 bits (133), Expect = 2e-09
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 72 VIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAY-CYWV 130
+ E ++S S+ +ST+D +M+ + G +ERT +++ L+ +GF +V CRA+ V
Sbjct: 181 LPEEPNTSEESKLVSTLDNLMF-ITVGGRERTEKQYEKLSKLSGFSKFQVACRAFNSLGV 239
Query: 131 IEFYK 135
+EFYK
Sbjct: 240 MEFYK 244
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 142 bits (360), Expect = 2e-41
Identities = 56/202 (27%), Positives = 98/202 (48%), Gaps = 6/202 (2%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
+L P FN +M + + ++ + + F L+ +VDV G +I T+P+
Sbjct: 45 FLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPK 104
Query: 204 ITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
+ I FD P V++N + +V GDMF ++P+ A+ K +L NW+D+ CL+ILK C
Sbjct: 105 LKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRILKKCK 164
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
+A+ K G+ + + + + + + L +D+ M K R E+K L +
Sbjct: 165 EAVTNDGKRGK-VTIIDMVIDKKKDENQVTQIKLLMDVNM--ACLNGKERNEEEWKKLFI 221
Query: 321 AAGFGTIKVICRSYCYWVIEFY 342
AGF K+ + +IE Y
Sbjct: 222 EAGFQHYKISPLTGFLSLIEIY 243
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 65.1 bits (158), Expect = 8e-13
Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 14/109 (12%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVN 51
G +D+ K+ FN +M + + + F+ L +VDV GG G
Sbjct: 36 VTL-GSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTT 94
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAK 100
+I T+ +++ I FD P V+EN S N++ + M+ P A
Sbjct: 95 AKIICETFPKLKCIVFDRPQVVENL---SGSNNLTYVGGDMFTSIPNAD 140
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 244 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 44.7 bits (105), Expect = 6e-06
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 89 DVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYWVIEFY 134
DV M KER EE+ L I AGF K+ +IE Y
Sbjct: 200 DVNM--ACLNGKERNEEEWKKLFIEAGFQHYKISPLTGFLSLIEIY 243
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 138 bits (348), Expect = 1e-39
Identities = 91/201 (45%), Positives = 126/201 (62%), Gaps = 7/201 (3%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
Y P +FN+ M +H+ I MKKILE Y GF+ LK LVDV GA ++ IV+ YP
Sbjct: 46 YHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPT 105
Query: 204 ITGINFDLPYVIKNA---PCVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILKNCY 260
I GINFDLP+VI++A P VEHV GDMFV++P A+F K + +WSDE CLK LKNCY
Sbjct: 106 IKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLKNCY 165
Query: 261 DALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320
+ALP + K + ++ LP +P+ S + ++ +D++M P K RT EF+ LA
Sbjct: 166 EALPDNGK----VIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAK 221
Query: 321 AAGFGTIKVICRSYCYWVIEF 341
AGF KV C ++ +++EF
Sbjct: 222 GAGFQGFKVHCNAFNTYIMEF 242
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 60.6 bits (146), Expect = 2e-11
Identities = 26/64 (40%), Positives = 36/64 (56%)
Query: 70 PHVIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVICRAYCYW 129
+ SS ++ + IDV+M PG KERT +EF LA GAGF KV C A+ +
Sbjct: 179 CILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238
Query: 130 VIEF 133
++EF
Sbjct: 239 IMEF 242
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 243 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Score = 59.8 bits (144), Expect = 6e-11
Identities = 50/217 (23%), Positives = 85/217 (39%), Gaps = 34/217 (15%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAIGFEELNE----------LVDVAGGLGVN 51
+A+ G+ F+Y D R +FN+ M +H+ I +++ E LVDV GG G
Sbjct: 37 KAY-GMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAV 95
Query: 52 MSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALA 111
++ IV+ Y I+GINFDLPHVIE+A P + + M+ P A M
Sbjct: 96 INTIVSKYPTIKGINFDLPHVIEDA---PSYPGVEHVGGDMFVSIPKADAVFM--KWICH 150
Query: 112 IGAGFGTIKVICRAYCYW-----------VIEFYKTMHIMDCIYLTMLPMMLNLFNQSMQ 160
+ +K + Y ++ + + + +ML +
Sbjct: 151 DWSDEHCLKFLKNCYEALPDNGKVIVAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKE 210
Query: 161 NHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLI 197
T + + + GF+ K C N ++
Sbjct: 211 -RTQKEFEDLAKGA-GFQGFKVH-----CNAFNTYIM 240
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 72.7 bits (177), Expect = 2e-15
Identities = 42/215 (19%), Positives = 72/215 (33%), Gaps = 24/215 (11%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
L+ + + F+ M + + + Y + ++ ++DV G ++ I P
Sbjct: 47 DLSADVALADSFDALMSCDEDLAYEAPADAYD-WSAVRHVLDVGGGNGGMLAAIALRAPH 105
Query: 204 ITGINFDLPYVIKNAPCVEHVEG-----------DMFVNVPSGQAIFTKSVLLNWSDEQC 252
+ G +L + A G + + VLLNWSDE
Sbjct: 106 LRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNWSDEDA 165
Query: 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312
L IL+ C AL + G FS++ LD+ M + RT
Sbjct: 166 LTILRGCVRALEPGGRLLVLDRADVEGDGADRFFSTL------LDLRMLTFMG-GRVRTR 218
Query: 313 GEFKALAMAAGFGTIKVI-----CRSYCYWVIEFY 342
E LA +AG + + ++EF
Sbjct: 219 DEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 52.7 bits (125), Expect = 2e-08
Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 10/84 (11%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI---------GFEELNELVDVAGGLGVNM 52
+ G ++ S D L + F+ M + + + ++DV GG G +
Sbjct: 38 GRY-GRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGML 96
Query: 53 SLIVNTYSQIRGINFDLPHVIENA 76
+ I +RG +L E A
Sbjct: 97 AAIALRAPHLRGTLVELAGPAERA 120
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Length = 256 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Score = 42.3 bits (98), Expect = 4e-05
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 6/52 (11%)
Query: 88 IDVVMYNLFPGAKERTMEEFNALAIGAGFGTIKVI-----CRAYCYWVIEFY 134
+D+ M G + RT +E LA AG + + ++EF
Sbjct: 203 LDLRMLTFMGG-RVRTRDEVVDLAGSAGLALASERTSGSTTLPFDFSILEFT 253
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 64.3 bits (155), Expect = 2e-12
Identities = 37/198 (18%), Positives = 62/198 (31%), Gaps = 20/198 (10%)
Query: 144 YLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ 203
L P + F+ + + Y + ++ ++DV G + I P
Sbjct: 46 DLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAAAIARRAPH 104
Query: 204 ITGINFDLPYVIKNAP-----------CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQC 252
++ ++ + A AI VLLNW D
Sbjct: 105 VSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDA 164
Query: 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTA 312
++IL C +AL + L +R F N LD+ M RT
Sbjct: 165 VRILTRCAEALEPGGR----ILIHERDDLHENSF---NEQFTELDLRMLVFLG-GALRTR 216
Query: 313 GEFKALAMAAGFGTIKVI 330
++ LA +AG +V
Sbjct: 217 EKWDGLAASAGLVVEEVR 234
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Score = 46.2 bits (108), Expect = 2e-06
Identities = 20/155 (12%), Positives = 46/155 (29%), Gaps = 11/155 (7%)
Query: 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI---------GFEELNELVDVAGGLGVNM 52
+ G ++ + L+ F+ + + + + ++DV GG G
Sbjct: 37 SIY-GKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFA 95
Query: 53 SLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVVMYNLFPGAKERTMEEFNALAI 112
+ I + ++ ++ A S +S V+ F R + +
Sbjct: 96 AAIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFV 155
Query: 113 GAGFG-TIKVICRAYCYWVIEFYKTMHIMDCIYLT 146
+ V C +E + I + L
Sbjct: 156 LLNWPDHDAVRILTRCAEALEPGGRILIHERDDLH 190
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 345 | |||
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 100.0 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 100.0 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 100.0 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 100.0 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 100.0 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.84 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.79 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.79 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.78 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.77 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.75 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.73 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.73 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.66 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.65 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.62 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.61 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.59 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.59 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.58 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.57 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.56 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.52 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.52 | |
| d1tw3a1 | 85 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.43 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.43 | |
| d1fp2a1 | 101 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.41 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.41 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.4 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.39 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.38 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.37 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.37 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.37 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.31 | |
| d1fp1d1 | 110 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.3 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.28 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.27 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.26 | |
| d1qzza1 | 92 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.24 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.23 | |
| d1kyza1 | 107 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 99.19 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.19 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.17 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.15 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.14 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.14 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.13 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.13 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.08 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.06 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.0 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.89 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 98.85 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 98.84 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 98.83 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.82 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 98.8 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.68 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.68 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.67 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.49 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.33 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.26 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.22 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.17 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.14 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.07 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.03 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.02 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.98 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 97.97 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 97.97 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 97.92 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 97.89 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 97.85 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 97.82 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.82 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 97.81 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 97.81 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.73 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.69 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 97.68 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 97.64 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 97.63 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 97.61 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 97.52 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 97.47 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.3 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 97.3 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 97.28 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 97.25 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 97.19 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.08 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.06 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.02 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 97.01 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 97.0 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.99 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 96.86 | |
| d1mkma1 | 75 | Transcriptional regulator IclR, N-terminal domain | 96.65 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 96.56 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 96.45 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 96.45 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 96.04 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 96.01 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 95.94 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 95.25 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 95.02 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 94.46 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.81 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 92.94 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.56 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 91.31 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 91.18 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 90.2 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 89.79 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 89.08 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 88.47 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 88.43 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 86.33 | |
| d1ub9a_ | 100 | Hypothetical protein PH1061 {Archaeon Pyrococcus h | 85.9 | |
| d3broa1 | 135 | Transcriptional regulator OEOE1854 {Oenococcus oen | 85.56 | |
| d1z05a1 | 71 | Transcriptional regulator VC2007 N-terminal domain | 85.48 | |
| d3ctaa1 | 85 | Ta1064 (RFK), N-terminal domain {Thermoplasma acid | 85.06 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 84.95 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 83.26 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 83.25 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 82.21 | |
| d1r1ta_ | 98 | SmtB repressor {Cyanobacteria (Synechococcus), pcc | 81.5 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 81.45 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 81.12 | |
| d1j5ya1 | 65 | Putative transcriptional regulator TM1602, N-termi | 81.06 | |
| d1ylfa1 | 138 | Hypothetical protein BC1842 {Bacillus cereus [TaxI | 80.51 |
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=3.1e-48 Score=342.95 Aligned_cols=230 Identities=39% Similarity=0.653 Sum_probs=200.5
Q ss_pred hhhhhhccccchhhhhchHHH---HHH-----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccc
Q 044482 109 ALAIGAGFGTIKVICRAYCYW---VIE-----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKEL 180 (345)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l---~~~-----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~ 180 (345)
|+++++.+++.|.++++|.+| +++ |+.++|.++|+|+.+||+..+.|+++|...+....+.+++.++.|++.
T Consensus 3 ~l~~~~~~~~~p~~~~~w~~l~~~v~~g~~~~f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~ 82 (244)
T d1fp1d2 3 YLASFTTFLCYPALLQVWMNFKEAVVDEDIDLFKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGI 82 (244)
T ss_dssp CCTHHHHHHTCHHHHHHHTTHHHHHHSCC--------------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTC
T ss_pred cHHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHhHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Confidence 688889988889999999998 332 888999999999999999999999999999998889999999878889
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHH
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
.+|||||||+|.++.+++++||+++++++|+|++++.+. |++++.||+++++|.+|+|+++++||+|+|++|.+||+
T Consensus 83 ~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~ri~~~~gd~~~~~p~~D~~~l~~vLh~~~de~~~~iL~ 162 (244)
T d1fp1d2 83 STLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDMFASVPQGDAMILKAVCHNWSDEKCIEFLS 162 (244)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCCTTEEEEECCTTTCCCCEEEEEEESSGGGSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEecchhhhhccCCCCCeEEecCCcccccccceEEEEehhhhhCCHHHHHHHHH
Confidence 999999999999999999999999999999999999887 99999999999999889999999999999999999999
Q ss_pred HHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec-CCce
Q 044482 258 NCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCY 336 (345)
Q Consensus 258 ~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~ 336 (345)
+++++|+| ||+|+|+ |.++++.+..+........+|+.|++.+ +|++||.+||+++|++|||+.+++.+. .+..
T Consensus 163 ~~~~aL~p---gg~llI~-e~v~~~~~~~~~~~~~~~~~d~~m~~~~-~g~ert~~e~~~ll~~AGF~~v~v~~~~~~~~ 237 (244)
T d1fp1d2 163 NCHKALSP---NGKVIIV-EFILPEEPNTSEESKLVSTLDNLMFITV-GGRERTEKQYEKLSKLSGFSKFQVACRAFNSL 237 (244)
T ss_dssp HHHHHEEE---EEEEEEE-EEEECSSCCSSHHHHHHHHHHHHHHHHH-SCCCEEHHHHHHHHHHTTCSEEEEEEEETTTE
T ss_pred HHHHHcCC---CcEEEEE-EEEecCCCCCchHHHHHHHHHHHHHhhC-CCcCCCHHHHHHHHHHcCCCceEEEecCCCCE
Confidence 99999999 9999999 9999887665544445567899999887 999999999999999999999999755 4678
Q ss_pred EEEEEEc
Q 044482 337 WVIEFYK 343 (345)
Q Consensus 337 ~vi~~~k 343 (345)
+|||++|
T Consensus 238 ~viE~~K 244 (244)
T d1fp1d2 238 GVMEFYK 244 (244)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 9999997
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=4.5e-46 Score=329.21 Aligned_cols=228 Identities=27% Similarity=0.438 Sum_probs=202.7
Q ss_pred hhhhhhccccchhhhhchHHH---HHH-----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHh-ccCccc
Q 044482 109 ALAIGAGFGTIKVICRAYCYW---VIE-----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEI-YKGFKE 179 (345)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~l---~~~-----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~-~~~~~~ 179 (345)
|+++++.++.+|..+.+|..+ +++ |+.++|+++|+|++++|+..+.|+++|...+......+.+. ++ |++
T Consensus 2 s~ap~~~~~~~p~~~~~w~~l~~~~~~~~~~~f~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~-~~~ 80 (244)
T d1fp2a2 2 CLAPMVECVLDPTLSGSYHELKKWIYEEDLTLFGVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFV-FDG 80 (244)
T ss_dssp CCHHHHHHHTCHHHHHGGGGHHHHHTCSSCCHHHHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHH-HTT
T ss_pred ChHHHHHHHhCHHHHHHHHHHHHHHhcCCCCHHHHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhccc-ccC
Confidence 467778888888888899887 322 88889999999999999999999999999888766666654 35 888
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHH
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL 256 (345)
..+|||||||+|.++..++++||+++++++|+|++++.+. |++++.|||++++|.+|+|+++++||+|+|++|++||
T Consensus 81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~rv~~~~gD~f~~~p~aD~~~l~~vLHdw~d~~~~~iL 160 (244)
T d1fp2a2 81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIPNADAVLLKYILHNWTDKDCLRIL 160 (244)
T ss_dssp CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHTTCCCBTTEEEEECCTTTCCCCCSEEEEESCGGGSCHHHHHHHH
T ss_pred ceEEEEecCCccHHHHHHHHhCCCCeEEEecCHHHHHhCcccCceEEEecCcccCCCCCcEEEEEeecccCChHHHHHHH
Confidence 8999999999999999999999999999999999999887 9999999999988877999999999999999999999
Q ss_pred HHHHhhCCCCCCC---cEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 257 KNCYDALPKSRKH---GRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 257 ~~~~~aL~p~~~g---G~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
++++++|+| | |+++|+ |.++++....+........+|+.|++ + +|++||.+||++||++|||+.+++++.+
T Consensus 161 ~~~~~al~p---gg~~~~lli~-e~~~~~~~~~~~~~~~~~~~dl~m~~-~-~G~ert~~e~~~ll~~AGf~~~~i~~~~ 234 (244)
T d1fp2a2 161 KKCKEAVTN---DGKRGKVTII-DMVIDKKKDENQVTQIKLLMDVNMAC-L-NGKERNEEEWKKLFIEAGFQHYKISPLT 234 (244)
T ss_dssp HHHHHHHSG---GGCCCEEEEE-ECEECTTTSCHHHHHHHHHHHHHGGG-G-TCCCEEHHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHcCc---ccCCcEEEEE-EeecCCCCCCchHHHHHHHHHHHHHh-C-CCcCCCHHHHHHHHHHcCCceEEEEECC
Confidence 999999999 7 899999 99998876655433444567887776 4 8999999999999999999999999999
Q ss_pred CceEEEEEEc
Q 044482 334 YCYWVIEFYK 343 (345)
Q Consensus 334 ~~~~vi~~~k 343 (345)
+..+|||++|
T Consensus 235 ~~~svIE~~p 244 (244)
T d1fp2a2 235 GFLSLIEIYP 244 (244)
T ss_dssp TTEEEEEEEC
T ss_pred CCeEEEEEeC
Confidence 9999999986
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=100.00 E-value=1.4e-45 Score=326.55 Aligned_cols=231 Identities=42% Similarity=0.723 Sum_probs=210.1
Q ss_pred hhhhhhhccccchhhhhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccc
Q 044482 108 NALAIGAGFGTIKVICRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKEL 180 (345)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~ 180 (345)
.|+++++.+.+++.++++|.+| +++ |+.++|.++|+|++++|+..+.|+++|...+....+.+++.++.+++.
T Consensus 3 ~s~~~~~~~~~~~~~~~~W~~L~~avrtG~~~f~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~ 82 (243)
T d1kyza2 3 VSISALNLMNQDKVLMESWYHLKDAVLDGGIPFNKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGL 82 (243)
T ss_dssp CCTHHHHHHHTSHHHHGGGGGHHHHHHHCSCHHHHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CcHHHHHHHhcCHHHHHHHHHHHHHHhhCCCHHHhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCC
Confidence 3789999998888899999999 554 899999999999999999999999999999888888999999834667
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC---CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHH
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP---CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~---ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
.+|||||||+|.++.+++++||+++++++|+|++++.++ |++++.+|+++++|.+|+|+++++||+|+|+++.++|+
T Consensus 83 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~vi~~~~~~~r~~~~~~d~~~~~P~ad~~~l~~vlh~~~d~~~~~iL~ 162 (243)
T d1kyza2 83 KSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIEDAPSYPGVEHVGGDMFVSIPKADAVFMKWICHDWSDEHCLKFLK 162 (243)
T ss_dssp SEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTTTTTCCCCTTEEEEECCTTTCCCCCSCEECSSSSTTSCHHHHHHHHH
T ss_pred cEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHhhhhcccCCceEEecccccccCCCcceEEEEEEeecCCHHHHHHHHH
Confidence 899999999999999999999999999999999999887 99999999999999889999999999999999999999
Q ss_pred HHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCCceE
Q 044482 258 NCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSYCYW 337 (345)
Q Consensus 258 ~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~~~~ 337 (345)
+++++|+| ||+++|+ |.+.++....+........+|+.||.++.+|++||.+||++||++|||+.+++++.++..+
T Consensus 163 ~~~~al~p---gg~~li~-d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv~~~~~~~~ 238 (243)
T d1kyza2 163 NCYEALPD---NGKVIVA-ECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKVHCNAFNTY 238 (243)
T ss_dssp HHHHHCCS---SSCEEEE-ECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEEEEEETTEE
T ss_pred HHHHhcCC---CceEEEE-EEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEEEEeCCCCE
Confidence 99999999 9999999 9998877655444444567899998876689999999999999999999999999988899
Q ss_pred EEEEE
Q 044482 338 VIEFY 342 (345)
Q Consensus 338 vi~~~ 342 (345)
|||.+
T Consensus 239 viE~~ 243 (243)
T d1kyza2 239 IMEFL 243 (243)
T ss_dssp EEEEC
T ss_pred EEEeC
Confidence 99963
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=100.00 E-value=3.8e-41 Score=300.46 Aligned_cols=229 Identities=22% Similarity=0.246 Sum_probs=196.3
Q ss_pred hhhhhhhhccccchhh-hhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcc
Q 044482 107 FNALAIGAGFGTIKVI-CRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFK 178 (345)
Q Consensus 107 ~~~~~~~~~~~~~~~~-~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~ 178 (345)
|.++++++.+...... ..+|..| +++ |+..+|.++|+|+.++|+..+.|+++|...+....+.+++.+| |+
T Consensus 2 p~~~~~~~~l~~~~~~~~~~~~~L~~~~rtG~~~~~~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d-~~ 80 (256)
T d1qzza2 2 PAQQRAWLDLNGAVSHADLAFTGLLDVVRTGRPAYAGRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYD-WS 80 (256)
T ss_dssp TTCHHHHHCTTSHHHHHHGGGGGHHHHHHHSCCSHHHHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSC-CT
T ss_pred cHHHHHHHhhcCchhhhHhhHHHHHHHHHhCCchhhhhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCC-Cc
Confidence 5578888877643322 2368777 454 8888999999999999999999999999988888889999999 99
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CEEEeccccccC
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QAIFTKSVLLNW 247 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~ 247 (345)
+.++|||||||+|.++..++++||+++++++|+|++++.++ |++++.+|+++++|.+ |+|+++++||+|
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~p~~~D~v~~~~vLh~~ 160 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFFKPLPVTADVVLLSFVLLNW 160 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCCEEEEEEESCGGGS
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHHHHHHHHHhhcCCcceeeeeeeeccccccccchhhhcccccccc
Confidence 99999999999999999999999999999999999887654 8999999999988866 999999999999
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCce
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTI 327 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~ 327 (345)
+|+++.++|++++++|+| ||+++|+ |.+.+++.... ......+|+.|+..+ +|++||.+||++++++|||+++
T Consensus 161 ~d~~~~~lL~~i~~~Lkp---gG~llI~-d~~~~~~~~~~--~~~~~~~d~~ml~~~-~g~~rt~~e~~~ll~~AGf~~~ 233 (256)
T d1qzza2 161 SDEDALTILRGCVRALEP---GGRLLVL-DRADVEGDGAD--RFFSTLLDLRMLTFM-GGRVRTRDEVVDLAGSAGLALA 233 (256)
T ss_dssp CHHHHHHHHHHHHHHEEE---EEEEEEE-ECCH---------HHHHHHHHHHHHHHH-SCCCCCHHHHHHHHHTTTEEEE
T ss_pred CcHHHHHHHHHHHhhcCC---cceeEEE-EeccCCCCccc--HHHHHHHHHHHHhhC-CCccCCHHHHHHHHHHCCCcee
Confidence 999999999999999999 9999999 98766543322 224566899999987 9999999999999999999999
Q ss_pred EEEecCC-----ceEEEEEEc
Q 044482 328 KVICRSY-----CYWVIEFYK 343 (345)
Q Consensus 328 ~~~~~~~-----~~~vi~~~k 343 (345)
++++.+. ..+|||+++
T Consensus 234 ~~~~~~~~~~~~~~~v~E~~~ 254 (256)
T d1qzza2 234 SERTSGSTTLPFDFSILEFTA 254 (256)
T ss_dssp EEEEECCSSCSSCEEEEEEEE
T ss_pred EEEEeCCcCccCceEEEEEEe
Confidence 9987653 469999976
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=100.00 E-value=3.1e-38 Score=281.24 Aligned_cols=212 Identities=21% Similarity=0.307 Sum_probs=184.8
Q ss_pred hhchHHH---HHH----HhHhcCcchhhhhccCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHH
Q 044482 123 CRAYCYW---VIE----FYKTMHIMDCIYLTMLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMS 195 (345)
Q Consensus 123 ~~~~~~l---~~~----~~~~~g~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~ 195 (345)
..+|.+| +++ |+..+|+++|+|+.++|+..+.|+.+|...+....+.+++.++ |++..+|||||||+|.++.
T Consensus 18 ~~~~~~L~~~vr~G~~~~~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d-~~~~~~VLDvGcG~G~~~~ 96 (253)
T d1tw3a2 18 DISFTRLPDAIRTGRPTYESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYD-WTNVRHVLDVGGGKGGFAA 96 (253)
T ss_dssp GGGGGGHHHHHHHCCCCHHHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSC-CTTCSEEEEETCTTSHHHH
T ss_pred cccHHHHHHHHHhCCchhhhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcC-CccCCEEEEeCCCCCHHHH
Confidence 4467777 554 8888999999999999999999999999988888889999999 9999999999999999999
Q ss_pred HHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCcCCCCC-CEEEeccccccCChhHHHHHHHHHHhhCC
Q 044482 196 LIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFVNVPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALP 264 (345)
Q Consensus 196 ~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~~~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~ 264 (345)
.+++++|+++++++|+|++++.++ |++++.+|++++.|.+ |+|+++++||||+|+++.++|++++++|+
T Consensus 97 ~la~~~p~~~~~~~D~~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~Lk 176 (253)
T d1tw3a2 97 AIARRAPHVSATVLEMAGTVDTARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIILSFVLLNWPDHDAVRILTRCAEALE 176 (253)
T ss_dssp HHHHHCTTCEEEEEECTTHHHHHHHHHHHTTCTTTEEEEECCTTSCCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEE
T ss_pred HHHHhcceeEEEEccCHHHHHHHHHHHHHhhcccchhhccccchhhcccchhheeeccccccCCchhhHHHHHHHHHhcC
Confidence 999999999999999998887665 7999999999977755 99999999999999999999999999999
Q ss_pred CCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEecCC-----ceEEE
Q 044482 265 KSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICRSY-----CYWVI 339 (345)
Q Consensus 265 p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~-----~~~vi 339 (345)
| ||+|+|. |...++..... .....+|+.|+..+ +|++||.+||++++++|||++++++.+++ ...+|
T Consensus 177 P---GG~l~i~-e~~~~~~~~~~---~~~~~~dl~~~~~~-~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p~~~~~~~li 248 (253)
T d1tw3a2 177 P---GGRILIH-ERDDLHENSFN---EQFTELDLRMLVFL-GGALRTREKWDGLAASAGLVVEEVRQLPSPTIPYDLSLL 248 (253)
T ss_dssp E---EEEEEEE-ECCBCGGGCCS---HHHHHHHHHHHHHH-SCCCCBHHHHHHHHHHTTEEEEEEEEEECSSSSCEEEEE
T ss_pred C---CcEEEEE-eccCCCCCcch---hHHHHhhHHHHhhC-CCcCCCHHHHHHHHHHCCCeEEEEEECCCCCCCccEEEE
Confidence 9 9999999 88765543322 23456788999887 99999999999999999999999887643 35677
Q ss_pred EEEc
Q 044482 340 EFYK 343 (345)
Q Consensus 340 ~~~k 343 (345)
+..|
T Consensus 249 ~~~P 252 (253)
T d1tw3a2 249 VLAP 252 (253)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6554
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.84 E-value=2.6e-20 Score=161.55 Aligned_cols=161 Identities=14% Similarity=0.141 Sum_probs=119.7
Q ss_pred ccccceEEecCCccHHHHHHHHH--CCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCCCCCEEEeccc
Q 044482 178 KELKKLVDVASCLGANMSLIVNT--YPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVPSGQAIFTKSV 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~--~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p~~D~i~~~~v 243 (345)
....+|||||||+|..+..+++. +|+.+++++|+ ++|++.|+ ++++..+|+.+ +.++.|++++.++
T Consensus 38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~i~~~~~ 117 (225)
T d1im8a_ 38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNFT 117 (225)
T ss_dssp CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCCCSEEEEEEESC
T ss_pred CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccccccceeeEEeee
Confidence 45678999999999999999986 58899999999 89998876 67788888876 4434599999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh-hc------------CCCccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD-LF------------PQAKGR 310 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~-~~------------~~~~~r 310 (345)
+|++++++..++|++++++|+| ||.+++. |...+..+..... .......+.... .. ..-...
T Consensus 118 l~~~~~~d~~~~l~~i~~~Lkp---gG~li~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (225)
T d1im8a_ 118 LQFLPPEDRIALLTKIYEGLNP---NGVLVLS-EKFRFEDTKINHL-LIDLHHQFKRANGYSELEVSQKRTALENVMRTD 192 (225)
T ss_dssp GGGSCGGGHHHHHHHHHHHEEE---EEEEEEE-EECCCSSHHHHHH-HHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCC
T ss_pred ccccChhhHHHHHHHHHHhCCC---Cceeecc-cccccccchhhhH-HHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCC
Confidence 9999988888999999999999 9999999 8877655321100 000000100000 00 001346
Q ss_pred CHHHHHHHHHHCCCCceEEEecCCceEEEEEEc
Q 044482 311 TAGEFKALAMAAGFGTIKVICRSYCYWVIEFYK 343 (345)
Q Consensus 311 t~~e~~~ll~~aGf~~~~~~~~~~~~~vi~~~k 343 (345)
+.+++.++|++|||+.+++.........+.|+|
T Consensus 193 s~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k 225 (225)
T d1im8a_ 193 SIETHKVRLKNVGFSQVELWFQCFNFGSMIAVK 225 (225)
T ss_dssp CHHHHHHHHHHHTCSEEEEEEEETTEEEEEEEC
T ss_pred CHHHHHHHHHHcCCCceEEeeeeCceEEEEEEC
Confidence 889999999999999999875555566677765
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.79 E-value=1.4e-19 Score=156.99 Aligned_cols=150 Identities=19% Similarity=0.273 Sum_probs=114.4
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~- 235 (345)
..+++..+ ..+..+|||||||+|.++..++++.+ +++++|+ +.+++.|+ +++|+.+|+.+ +++.+
T Consensus 5 ~~ll~~~~-l~~~~rVLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~ 81 (231)
T d1vl5a_ 5 AKLMQIAA-LKGNEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDER 81 (231)
T ss_dssp HHHHHHHT-CCSCCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTC
T ss_pred HHHHHhcC-CCCcCEEEEecccCcHHHHHHHHhCC--EEEEEECCHHHHhhhhhcccccccccccccccccccccccccc
Confidence 35666666 78889999999999999999998864 6899999 88887764 79999999988 77755
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhh-cCCCccCCHH
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDL-FPQAKGRTAG 313 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~~rt~~ 313 (345)
|+|++.+++||++|.+ ++|++++++|+| ||+++|. +...+.... .....+...... ......++.+
T Consensus 82 fD~v~~~~~l~~~~d~~--~~l~~~~r~Lkp---gG~l~i~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~ 149 (231)
T d1vl5a_ 82 FHIVTCRIAAHHFPNPA--SFVSEAYRVLKK---GGQLLLV-DNSAPENDA------FDVFYNYVEKERDYSHHRAWKKS 149 (231)
T ss_dssp EEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEE-EEEBCSSHH------HHHHHHHHHHHHCTTCCCCCBHH
T ss_pred cccccccccccccCCHH--HHHHHHHHhcCC---CcEEEEE-eCCCCCCHH------HHHHHHHHHhhcccCcccCCCHH
Confidence 9999999999998875 789999999999 9999999 876553311 111111111111 1133567889
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
+|.++|+++||+++++...
T Consensus 150 ~~~~~l~~aGf~~~~~~~~ 168 (231)
T d1vl5a_ 150 DWLKMLEEAGFELEELHCF 168 (231)
T ss_dssp HHHHHHHHHTCEEEEEEEE
T ss_pred HHHHHHHHCCCEEEEEEEe
Confidence 9999999999998876543
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.79 E-value=3.4e-19 Score=159.67 Aligned_cols=164 Identities=15% Similarity=0.218 Sum_probs=124.4
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------Cc
Q 044482 153 NLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CV 221 (345)
Q Consensus 153 ~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri 221 (345)
..+.+++..........+....+ +++..+|||||||+|.++..+++++ +.+++++|+ |.+++.|+ ++
T Consensus 42 ~~~~~a~~~~~~~~~~~l~~~~~-l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v 119 (282)
T d2o57a1 42 DEIREASLRTDEWLASELAMTGV-LQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQAGLADNI 119 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHHTCTTTE
T ss_pred cCHHHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccccccccc
Confidence 34445554444445556666666 8888999999999999999999876 578999998 78877665 78
Q ss_pred eEEeccCCc-CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccch
Q 044482 222 EHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDI 298 (345)
Q Consensus 222 ~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~ 298 (345)
+++.+|+.+ ++|.+ |+|++..++||+++.+ ++|++++++|+| ||++++. +....+...... .....+.
T Consensus 120 ~~~~~d~~~l~~~~~sfD~V~~~~~l~h~~d~~--~~l~~~~~~Lkp---gG~l~~~-~~~~~~~~~~~~---~~~~~~~ 190 (282)
T d2o57a1 120 TVKYGSFLEIPCEDNSYDFIWSQDAFLHSPDKL--KVFQECARVLKP---RGVMAIT-DPMKEDGIDKSS---IQPILDR 190 (282)
T ss_dssp EEEECCTTSCSSCTTCEEEEEEESCGGGCSCHH--HHHHHHHHHEEE---EEEEEEE-EEEECTTCCGGG---GHHHHHH
T ss_pred cccccccccccccccccchhhccchhhhccCHH--HHHHHHHHhcCC---CcEEEEE-EeecCCCCchhH---HHHHHHH
Confidence 999999998 77755 9999999999998874 789999999999 9999999 887665433211 1111111
Q ss_pred hhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 299 VMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 299 ~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.. .....+.++|.++++++||+.+++...
T Consensus 191 ----~~-~~~~~s~~~~~~~l~~~Gf~~i~~~d~ 219 (282)
T d2o57a1 191 ----IK-LHDMGSLGLYRSLAKECGLVTLRTFSR 219 (282)
T ss_dssp ----HT-CSSCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred ----hc-cCCCCCHHHHHHHHHHcCCceEEEEEC
Confidence 11 223457899999999999998887654
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.78 E-value=2.1e-19 Score=158.53 Aligned_cols=146 Identities=14% Similarity=0.178 Sum_probs=117.2
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC--C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~--D 236 (345)
..+++.++ ..+..+|||||||+|.++..++.++.+ +++++|. +.+++.|+ +++|+.+|+.+ +++++ |
T Consensus 83 ~~fl~~l~-~~~~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~~~~~~fD 160 (254)
T d1xtpa_ 83 RNFIASLP-GHGTSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKRELAGMPVGKFILASMETATLPPNTYD 160 (254)
T ss_dssp HHHHHTST-TCCCSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCCCCSSCEE
T ss_pred HHHHhhCC-CCCCCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccccccccceeEEccccccccCCCccc
Confidence 45667776 567789999999999999999987765 7899998 88888776 58899999987 55544 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFK 316 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~ 316 (345)
+|++.+++||++|++..++|++|+++|+| ||.|+|. |.+...... ..|. . .+...||.++|+
T Consensus 161 ~I~~~~vl~hl~d~d~~~~l~~~~~~Lkp---gG~iii~-e~~~~~~~~---------~~d~----~-d~~~~rs~~~~~ 222 (254)
T d1xtpa_ 161 LIVIQWTAIYLTDADFVKFFKHCQQALTP---NGYIFFK-ENCSTGDRF---------LVDK----E-DSSLTRSDIHYK 222 (254)
T ss_dssp EEEEESCGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEBC--CCE---------EEET----T-TTEEEBCHHHHH
T ss_pred eEEeeccccccchhhhHHHHHHHHHhcCC---CcEEEEE-ecCCCCCcc---------eecc----c-CCceeCCHHHHH
Confidence 99999999999999999999999999999 9999999 876543211 1111 1 144568999999
Q ss_pred HHHHHCCCCceEEEecC
Q 044482 317 ALAMAAGFGTIKVICRS 333 (345)
Q Consensus 317 ~ll~~aGf~~~~~~~~~ 333 (345)
++++++||++++.....
T Consensus 223 ~l~~~aGf~ii~~~~q~ 239 (254)
T d1xtpa_ 223 RLFNESGVRVVKEAFQE 239 (254)
T ss_dssp HHHHHHTCCEEEEEECT
T ss_pred HHHHHcCCEEEEEEeeC
Confidence 99999999999876543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.77 E-value=4.6e-19 Score=153.22 Aligned_cols=137 Identities=13% Similarity=0.136 Sum_probs=111.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~--D~i~~~~v 243 (345)
.....+|||||||+|.++..++++++. +++++|+ +.+++.|+ +++|+++|+.+ +++.+ |+|++..+
T Consensus 58 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~ 136 (222)
T d2ex4a1 58 KTGTSCALDCGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV 136 (222)
T ss_dssp CCCCSEEEEETCTTTHHHHHTTTTTCS-EEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred CCCCCEEEEeccCCCHhhHHHHHhcCC-EEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 345678999999999999999877764 7999999 88888765 57999999988 55543 99999999
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
+||+++++..++|+++++.|+| ||.+++. +.+..+.. .++ .. .....|+.++|+++++++|
T Consensus 137 l~h~~~~~~~~~l~~i~~~Lk~---~G~~~i~-~~~~~~~~----------~~~----~~-~~~~~~~~~~~~~l~~~aG 197 (222)
T d2ex4a1 137 IGHLTDQHLAEFLRRCKGSLRP---NGIIVIK-DNMAQEGV----------ILD----DV-DSSVCRDLDVVRRIICSAG 197 (222)
T ss_dssp GGGSCHHHHHHHHHHHHHHEEE---EEEEEEE-EEEBSSSE----------EEE----TT-TTEEEEBHHHHHHHHHHTT
T ss_pred cccchhhhhhhHHHHHHHhcCC---cceEEEE-Eccccccc----------ccc----cC-CceeeCCHHHHHHHHHHcC
Confidence 9999999888999999999999 9999999 87654321 011 01 1344578999999999999
Q ss_pred CCceEEEecC
Q 044482 324 FGTIKVICRS 333 (345)
Q Consensus 324 f~~~~~~~~~ 333 (345)
|++++.....
T Consensus 198 f~ii~~~~q~ 207 (222)
T d2ex4a1 198 LSLLAEERQE 207 (222)
T ss_dssp CCEEEEEECC
T ss_pred CEEEEEEEeC
Confidence 9999887653
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.75 E-value=2.7e-18 Score=149.43 Aligned_cols=148 Identities=15% Similarity=0.159 Sum_probs=115.1
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCCC--
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPSG-- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~~-- 235 (345)
-+++..+ +++..+|||||||+|.++..++++.+ +++++|+ +.+++.|+ ++.++.+|+.+ +++++
T Consensus 7 ~l~~~~~-~~~~~rILDiGcGtG~~~~~la~~~~--~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~f 83 (234)
T d1xxla_ 7 LMIKTAE-CRAEHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSF 83 (234)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCE
T ss_pred HHHHHhC-CCCCCEEEEeCCcCcHHHHHHHHhCC--eEEEEeCChhhhhhhhhhhccccccccccccccccccccccccc
Confidence 4567777 89999999999999999999999864 6899998 78887765 69999999988 77755
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhc-CCCccCCHHH
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLF-PQAKGRTAGE 314 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~~~~rt~~e 314 (345)
|+|++.+++||++|. .++|+++++.|+| ||++++. +...++.+ .. ...++....... ...+..+..+
T Consensus 84 D~v~~~~~l~~~~d~--~~~l~~~~r~Lkp---gG~~~~~-~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~ 151 (234)
T d1xxla_ 84 DIITCRYAAHHFSDV--RKAVREVARVLKQ---DGRFLLV-DHYAPEDP---VL---DEFVNHLNRLRDPSHVRESSLSE 151 (234)
T ss_dssp EEEEEESCGGGCSCH--HHHHHHHHHHEEE---EEEEEEE-EECBCSSH---HH---HHHHHHHHHHHCTTCCCCCBHHH
T ss_pred ceeeeeceeecccCH--HHHHHHHHHeeCC---CcEEEEE-EcCCCCCH---HH---HHHHHHHHhhCCCcccccCCHHH
Confidence 999999999999886 4889999999999 9999999 87655331 11 111121111111 1345678999
Q ss_pred HHHHHHHCCCCceEEEe
Q 044482 315 FKALAMAAGFGTIKVIC 331 (345)
Q Consensus 315 ~~~ll~~aGf~~~~~~~ 331 (345)
|..+++++||.+.++..
T Consensus 152 ~~~~~~~~gf~~~~~~~ 168 (234)
T d1xxla_ 152 WQAMFSANQLAYQDIQK 168 (234)
T ss_dssp HHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHCCCceeEEEE
Confidence 99999999998776644
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.73 E-value=8.3e-18 Score=147.34 Aligned_cols=150 Identities=12% Similarity=0.073 Sum_probs=115.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
...+.+.+. +....+|||||||+|.++..++++++ .+++++|+ +.+++.|+ |++|+.+|+.+..+++
T Consensus 22 ~~~l~~~~~-l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~ 99 (245)
T d1nkva_ 22 YATLGRVLR-MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANE 99 (245)
T ss_dssp HHHHHHHTC-CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSS
T ss_pred HHHHHHHcC-CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccC
Confidence 445677777 88889999999999999999998876 79999999 88887655 6999999998855543
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHH
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAG 313 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~ 313 (345)
|+|++..++||++|. .++|+++++.||| ||+++|. +......+..... ..... ........+..
T Consensus 100 ~fD~v~~~~~~~~~~d~--~~~l~~~~r~LkP---GG~l~i~-~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~~~ 165 (245)
T d1nkva_ 100 KCDVAACVGATWIAGGF--AGAEELLAQSLKP---GGIMLIG-EPYWRQLPATEEI---AQACG-----VSSTSDFLTLP 165 (245)
T ss_dssp CEEEEEEESCGGGTSSS--HHHHHHHTTSEEE---EEEEEEE-EEEETTCCSSHHH---HHTTT-----CSCGGGSCCHH
T ss_pred ceeEEEEEehhhccCCH--HHHHHHHHHHcCc---CcEEEEE-eccccCCCChHHH---HHHhc-----cCCCcccCCHH
Confidence 999999999999987 4789999999999 9999999 8765544322111 01000 11122356889
Q ss_pred HHHHHHHHCCCCceEEEec
Q 044482 314 EFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 314 e~~~ll~~aGf~~~~~~~~ 332 (345)
++.++++++||+++.....
T Consensus 166 ~~~~~~~~aG~~~v~~~~~ 184 (245)
T d1nkva_ 166 GLVGAFDDLGYDVVEMVLA 184 (245)
T ss_dssp HHHHHHHTTTBCCCEEEEC
T ss_pred HHHHHHHHcCCEEEEEEeC
Confidence 9999999999998876544
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.73 E-value=8.5e-18 Score=143.43 Aligned_cols=135 Identities=16% Similarity=0.110 Sum_probs=101.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCc-CCCCC--CEEEeccccccCChhHH
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSDEQC 252 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d~~~ 252 (345)
...+|||||||+|.++..+. +.+++|+ |.+++.++ +++++.+|+.+ +++++ |+|++.++|||++|.
T Consensus 36 ~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~~~~~~~~~d~~~l~~~~~~fD~I~~~~~l~h~~d~-- 107 (208)
T d1vlma_ 36 PEGRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARKRGVFVLKGTAENLPLKDESFDFALMVTTICFVDDP-- 107 (208)
T ss_dssp CSSCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHHTTCEEEECBTTBCCSCTTCEEEEEEESCGGGSSCH--
T ss_pred CCCeEEEECCCCcccccccc------eEEEEeCChhhccccccccccccccccccccccccccccccccccccccccc--
Confidence 34589999999999998874 3589999 88998887 79999999988 67654 999999999999876
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEe
Q 044482 253 LKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVIC 331 (345)
Q Consensus 253 ~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~ 331 (345)
.++|++++++|+| ||++++. +..... ..... ...+........+...+|.+++.++|+++||+++++..
T Consensus 108 ~~~l~~~~~~L~p---gG~l~i~-~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v~~ 176 (208)
T d1vlma_ 108 ERALKEAYRILKK---GGYLIVG-IVDRES-----FLGRE-YEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVVQ 176 (208)
T ss_dssp HHHHHHHHHHEEE---EEEEEEE-EECSSS-----HHHHH-HHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred ccchhhhhhcCCC---CceEEEE-ecCCcc-----hhHHh-hhhccccccccccccCCCHHHHHHHHHHcCCeEEEEEE
Confidence 4789999999999 9999998 643221 00000 00011111111244568999999999999999888764
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.66 E-value=9.6e-17 Score=143.42 Aligned_cols=158 Identities=14% Similarity=0.118 Sum_probs=109.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
.+++.+.....+.+|||||||+|.++..+++.+|. .+++++|+ +.+++.|+ +++|+.+|+.+ ++++. |
T Consensus 17 ~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~~~~~fD 96 (281)
T d2gh1a1 17 FLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIELNDKYD 96 (281)
T ss_dssp HHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCCCSSCEE
T ss_pred HHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccccccccccccccccccCCce
Confidence 34443322567789999999999999999999885 78999999 88888776 68899999987 55555 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC-------CCC-chhhhhhhccchhhhhhcCCCc
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES-------PEF-SSINRNILTLDIVMYDLFPQAK 308 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~-------~~~-~~~~~~~~~~d~~~~~~~~~~~ 308 (345)
+|++.+++||+++.+ ++|++++++||| ||++++. |...... ... ...........+........++
T Consensus 97 ~v~~~~~l~~~~d~~--~~l~~~~~~Lkp---gG~lii~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (281)
T d2gh1a1 97 IAICHAFLLHMTTPE--TMLQKMIHSVKK---GGKIICF-EPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGK 170 (281)
T ss_dssp EEEEESCGGGCSSHH--HHHHHHHHTEEE---EEEEEEE-ECCHHHHHTSEEETTSCHHHHCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEehhhhcCCCHH--HHHHHHHHHcCc---CcEEEEE-ECCccccchhhccCchhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 999999999999875 789999999999 9999999 7532110 000 0000000011111111101222
Q ss_pred -cCCHHHHHHHHHHCCCCceEEEec
Q 044482 309 -GRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 309 -~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.....++..+|+++||+++++...
T Consensus 171 ~~~i~~~l~~~l~eaGf~~i~~~~~ 195 (281)
T d2gh1a1 171 DGNIGMKIPIYLSELGVKNIECRVS 195 (281)
T ss_dssp CTTGGGTHHHHHHHTTCEEEEEEEC
T ss_pred CCCHHHHHHHHHHHcCCeEEEEEEe
Confidence 222346788999999999887644
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.65 E-value=7.7e-16 Score=137.11 Aligned_cols=159 Identities=14% Similarity=0.204 Sum_probs=121.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
.+.+++.++ .++..+|||||||.|.++..++++++ .+++++|+ ++.++.|+ ++.+...|+.+ ++..
T Consensus 41 ~~~~~~~l~-l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~-~~~~ 117 (280)
T d2fk8a1 41 VDLNLDKLD-LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED-FAEP 117 (280)
T ss_dssp HHHHHTTSC-CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh-hccc
Confidence 456888888 88899999999999999999988885 69999999 66665544 56676677554 3433
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCc-----hhhhhhhccchhhhhhcCCCcc
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFS-----SINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~-----~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
|.|++..+++|++++....+|+++++.||| ||+++|. +.+..++.... .........|+..--.+|+|..
T Consensus 118 fD~i~si~~~eh~~~~~~~~~f~~i~~~Lkp---gG~~~i~-~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifPgg~l 193 (280)
T d2fk8a1 118 VDRIVSIEAFEHFGHENYDDFFKRCFNIMPA---DGRMTVQ-SSVSYHPYEMAARGKKLSFETARFIKFIVTEIFPGGRL 193 (280)
T ss_dssp CSEEEEESCGGGTCGGGHHHHHHHHHHHSCT---TCEEEEE-EEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTSTTCCC
T ss_pred hhhhhHhhHHHHhhhhhHHHHHHHHHhccCC---CceEEEE-EeeccCcchhhhcccccccccccccchhhhhccCCCcc
Confidence 999999999999998888999999999999 9999998 76554321100 0000112234444345678889
Q ss_pred CCHHHHHHHHHHCCCCceEEEec
Q 044482 310 RTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.+.+++.+.++++||++..+...
T Consensus 194 PS~~~l~~~~e~aGf~v~~~~~~ 216 (280)
T d2fk8a1 194 PSTEMMVEHGEKAGFTVPEPLSL 216 (280)
T ss_dssp CCHHHHHHHHHHTTCBCCCCEEC
T ss_pred cchHhhhhhHHhhccccceeeec
Confidence 99999999999999999887665
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=3.5e-15 Score=132.88 Aligned_cols=160 Identities=16% Similarity=0.151 Sum_probs=121.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS- 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~- 234 (345)
.+.+++.+. .++..+|||||||.|.++..+++++ +++++++++ +.-++.++ ++++..+|+.+ +|.
T Consensus 51 ~~~~~~~l~-l~~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~-~~~~ 127 (285)
T d1kpga_ 51 IDLALGKLG-LQPGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ-FDEP 127 (285)
T ss_dssp HHHHHTTTT-CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG-CCCC
T ss_pred HHHHHHHcC-CCCCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhc-cccc
Confidence 456788888 8889999999999999999999999 589999999 54444332 78999999864 333
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC-----CchhhhhhhccchhhhhhcCCCcc
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE-----FSSINRNILTLDIVMYDLFPQAKG 309 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~ 309 (345)
-|.|+....+.|+.......++++|++.|+| ||+++|. +.+...+.. .+.........++..--++++|..
T Consensus 128 fD~i~si~~~eh~~~~~~~~~~~~~~r~Lkp---gG~~~l~-~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFpgg~l 203 (285)
T d1kpga_ 128 VDRIVSIGAFEHFGHERYDAFFSLAHRLLPA---DGVMLLH-TITGLHPKEIHERGLPMSFTFARFLKFIVTEIFPGGRL 203 (285)
T ss_dssp CSEEEEESCGGGTCTTTHHHHHHHHHHHSCT---TCEEEEE-EEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTSTTCCC
T ss_pred ccceeeehhhhhcCchhHHHHHHHHHhhcCC---CCcEEEE-EEeccCchhhccccCCcchhhhchhhHHHHHhccCCCC
Confidence 3999999999999877667899999999999 9999998 766433210 000011112233333344578889
Q ss_pred CCHHHHHHHHHHCCCCceEEEecC
Q 044482 310 RTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 310 rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
.+..++.++++++||++.++..+.
T Consensus 204 Psl~~~~~~~e~agf~v~~~~~~~ 227 (285)
T d1kpga_ 204 PSIPMVQECASANGFTVTRVQSLQ 227 (285)
T ss_dssp CCHHHHHHHHHTTTCEEEEEEECH
T ss_pred CChhhHHHHHHHhchhhcccccch
Confidence 999999999999999999887663
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.61 E-value=1.3e-15 Score=131.39 Aligned_cols=140 Identities=16% Similarity=0.118 Sum_probs=101.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-CCCCC-CEEEeccccccCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-NVPSG-QAIFTKSVLLNWS 248 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~~p~~-D~i~~~~vlh~~~ 248 (345)
+....+|||||||+|.++..++++.. +++++|+ +.+++.|+ +++++.+|+.+ +.++. |+|++.++|||++
T Consensus 18 ~~~~~~VLDiGcG~G~~~~~l~~~g~--~v~giD~s~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~vleh~~ 95 (225)
T d2p7ia1 18 FFRPGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRLKDGITYIHSRFEDAQLPRRYDNIVLTHVLEHID 95 (225)
T ss_dssp GCCSSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHSCSCEEEEESCGGGCCCSSCEEEEEEESCGGGCS
T ss_pred hCCCCcEEEEeCCCcHHHHHHHHcCC--eEEEEeCcHHHhhhhhcccccccccccccccccccccccccccccceeEecC
Confidence 44567999999999999999998764 6999999 88888876 69999999877 44444 9999999999998
Q ss_pred hhHHHHHHHHHH-hhCCCCCCCcEEEEEeccCCCCCCCCchhhhhh---------hccchhhhhhcCCCccCCHHHHHHH
Q 044482 249 DEQCLKILKNCY-DALPKSRKHGRTQLRSKRGLPESPEFSSINRNI---------LTLDIVMYDLFPQAKGRTAGEFKAL 318 (345)
Q Consensus 249 d~~~~~iL~~~~-~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~---------~~~d~~~~~~~~~~~~rt~~e~~~l 318 (345)
|+ ..+|++++ +.|+| ||.++|. -+- .... ..... ..+.-.-... .....++.++++++
T Consensus 96 d~--~~~l~~i~~~~Lk~---gG~l~i~-~pn---~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~~ 163 (225)
T d2p7ia1 96 DP--VALLKRINDDWLAE---GGRLFLV-CPN---ANAV--SRQIAVKMGIISHNSAVTEAEFAH-GHRCTYALDTLERD 163 (225)
T ss_dssp SH--HHHHHHHHHTTEEE---EEEEEEE-EEC---TTCH--HHHHHHHTTSSSSTTCCCHHHHHT-TCCCCCCHHHHHHH
T ss_pred CH--HHHHHHHHHHhcCC---CceEEEE-eCC---cccH--HHHHHHHhhhhhhhhhcCccccce-eeeeccCHHHHHHH
Confidence 87 47899998 68999 9999887 321 1100 00000 0000000111 12346789999999
Q ss_pred HHHCCCCceEEE
Q 044482 319 AMAAGFGTIKVI 330 (345)
Q Consensus 319 l~~aGf~~~~~~ 330 (345)
++++||++++..
T Consensus 164 l~~~Gf~i~~~~ 175 (225)
T d2p7ia1 164 ASRAGLQVTYRS 175 (225)
T ss_dssp HHHTTCEEEEEE
T ss_pred HHHCCCEEEEEE
Confidence 999999988754
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.59 E-value=4e-15 Score=125.73 Aligned_cols=103 Identities=13% Similarity=0.076 Sum_probs=85.3
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-CE
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG-QA 237 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~-D~ 237 (345)
+++... +....+|||||||+|..+..++++. .+++++|+ +.+++.++ ++++..+|+.+..+ .. |+
T Consensus 22 ~~~~~~-~~~~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~ 98 (198)
T d2i6ga1 22 VLAAAK-VVAPGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDF 98 (198)
T ss_dssp HHHHHT-TSCSCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEE
T ss_pred HHHHcc-cCCCCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccE
Confidence 333333 4455799999999999999999985 47899999 77787654 68889999988434 44 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|++..++||+++++..++|++++++|+| ||.+++. ...
T Consensus 99 I~~~~~~~~~~~~~~~~~l~~~~~~L~p---gG~~~~~-~~~ 136 (198)
T d2i6ga1 99 ILSTVVMMFLEAQTIPGLIANMQRCTKP---GGYNLIV-AAM 136 (198)
T ss_dssp EEEESCGGGSCTTHHHHHHHHHHHTEEE---EEEEEEE-EEB
T ss_pred EEEeeeeecCCHHHHHHHHHHHHHHcCC---CcEEEEE-Eec
Confidence 9999999999999999999999999999 9999888 554
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.59 E-value=5.5e-15 Score=131.96 Aligned_cols=161 Identities=16% Similarity=0.198 Sum_probs=120.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG 235 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~ 235 (345)
.+.+++.+. .++..+|||||||.|.++..++++++ ++++++++ ++.++.++ ++.+...|+..+-.+-
T Consensus 50 ~~~~~~~l~-l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~f 127 (291)
T d1kpia_ 50 RKLALDKLN-LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEFDEPV 127 (291)
T ss_dssp HHHHHHTTC-CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGCCCCC
T ss_pred HHHHHHhcC-CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccccccc
Confidence 456788888 88999999999999999999999986 69999999 54444333 7888888864321123
Q ss_pred CEEEeccccccCCh-------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch-----hhhhhhccchhhhhh
Q 044482 236 QAIFTKSVLLNWSD-------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS-----INRNILTLDIVMYDL 303 (345)
Q Consensus 236 D~i~~~~vlh~~~d-------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~-----~~~~~~~~d~~~~~~ 303 (345)
|.|++...+.|+.+ +.-..+|++|++.||| ||++++. ..+.++...... ........++..--+
T Consensus 128 D~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~Lkp---gG~~~l~-~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyi 203 (291)
T d1kpia_ 128 DRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNLTPD---DGRMLLH-TITIPDKEEAQELGLTSPMSLLRFIKFILTEI 203 (291)
T ss_dssp SEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHTSCT---TCEEEEE-EEECCCHHHHHHHTCCCCHHHHHHHHHHHHHT
T ss_pred ceEeechhHHhcchhhhhhHHHHHHHHHHHHHHhCCC---CCceEEE-EEeccCcchhhhccCCCchhhcccchHHHHHh
Confidence 99999999999887 3457899999999999 9999999 877654321100 000112223333334
Q ss_pred cCCCccCCHHHHHHHHHHCCCCceEEEecC
Q 044482 304 FPQAKGRTAGEFKALAMAAGFGTIKVICRS 333 (345)
Q Consensus 304 ~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~ 333 (345)
+++|...+..++...++++||++..+...+
T Consensus 204 Fpgg~lps~~~~~~~~e~~gl~v~~~~~~~ 233 (291)
T d1kpia_ 204 FPGGRLPRISQVDYYSSNAGWKVERYHRIG 233 (291)
T ss_dssp CTTCCCCCHHHHHHHHHHHTCEEEEEEECG
T ss_pred cCCCCCCCHHHHHhhhcccccccceeeecc
Confidence 578999999999999999999998887764
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.58 E-value=4.2e-15 Score=128.34 Aligned_cols=144 Identities=12% Similarity=0.029 Sum_probs=109.2
Q ss_pred HhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCC--CC--CEEE
Q 044482 172 EIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVP--SG--QAIF 239 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p--~~--D~i~ 239 (345)
+.++ ..+..+|||||||+|.++..+++..|+.+++++|+ |.+++.++ ++..+.+|...+.+ .. |+++
T Consensus 68 ~~l~-ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~v~~ 146 (230)
T d1g8sa_ 68 KVMP-IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYANIVEKVDV 146 (230)
T ss_dssp CCCC-CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTTTCCCEEE
T ss_pred HhCC-CCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEEeeccCcccccccceeEE
Confidence 3445 77889999999999999999999999999999999 88877654 67788888877322 22 8888
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
+.+.+|++++. ..+++++++.||| ||+++|. +.....+...+ .....+++.+.|
T Consensus 147 i~~~~~~~~~~--~~~l~~~~r~LKp---gG~~~i~-~k~~~~d~~~~--------------------~~~~~~e~~~~L 200 (230)
T d1g8sa_ 147 IYEDVAQPNQA--EILIKNAKWFLKK---GGYGMIA-IKARSIDVTKD--------------------PKEIFKEQKEIL 200 (230)
T ss_dssp EEECCCSTTHH--HHHHHHHHHHEEE---EEEEEEE-EEGGGTCSSSC--------------------HHHHHHHHHHHH
T ss_pred eeccccchHHH--HHHHHHHHHhccc---CceEEEE-eeccccCCCCC--------------------HHHHHHHHHHHH
Confidence 88888877654 5789999999999 9999998 65443332111 111246788999
Q ss_pred HHCCCCceEEEecCC---ceEEEEEE
Q 044482 320 MAAGFGTIKVICRSY---CYWVIEFY 342 (345)
Q Consensus 320 ~~aGf~~~~~~~~~~---~~~vi~~~ 342 (345)
+++||++++...+.+ .+.++.++
T Consensus 201 ~~aGF~ive~idL~py~~~H~~vvg~ 226 (230)
T d1g8sa_ 201 EAGGFKIVDEVDIEPFEKDHVMFVGI 226 (230)
T ss_dssp HHHTEEEEEEEECTTTSTTEEEEEEE
T ss_pred HHcCCEEEEEecCCCCcCCeEEEEEE
Confidence 999999999988854 35555544
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.57 E-value=4.4e-15 Score=127.38 Aligned_cols=103 Identities=17% Similarity=0.246 Sum_probs=86.4
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC--C
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG--Q 236 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~--D 236 (345)
.+++.+ .....+|||||||+|.++..+++. +.+++++|+ +.+++.|+ ++.++.+|+.+ +++++ |
T Consensus 29 ~~~~~~--l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~~~~~~fD 104 (226)
T d1ve3a1 29 PLLMKY--MKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLSFEDKTFD 104 (226)
T ss_dssp HHHHHS--CCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCCSCTTCEE
T ss_pred HHHHHh--cCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccccccccccccccccccccCcCce
Confidence 344443 235579999999999999999975 468999999 88888776 68889999988 77754 9
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+|++.+++||+++++..++|++++++|+| ||+++|. ...
T Consensus 105 ~I~~~~~l~~~~~~d~~~~l~~i~~~Lkp---gG~lii~-~~~ 143 (226)
T d1ve3a1 105 YVIFIDSIVHFEPLELNQVFKEVRRVLKP---SGKFIMY-FTD 143 (226)
T ss_dssp EEEEESCGGGCCHHHHHHHHHHHHHHEEE---EEEEEEE-EEC
T ss_pred EEEEecchhhCChhHHHHHHHHHHHHcCc---CcEEEEE-EcC
Confidence 99999999999988888999999999999 9999887 553
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.56 E-value=3e-15 Score=130.78 Aligned_cols=90 Identities=14% Similarity=0.106 Sum_probs=76.2
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-CEEEec-cccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-QAIFTK-SVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D~i~~~-~vlh~~ 247 (345)
..+|||||||+|.++..++++.. +++++|+ +.|++.|+ +++++.+|+.+ +++.. |+|++. ++++++
T Consensus 38 ~~~vLDiGCG~G~~~~~l~~~g~--~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 115 (246)
T d1y8ca_ 38 FDDYLDLACGTGNLTENLCPKFK--NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNINRKFDLITCCLDSTNYI 115 (246)
T ss_dssp TTEEEEETCTTSTTHHHHGGGSS--EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCCCSCCEEEEEECTTGGGGC
T ss_pred CCeEEEEeCcCCHHHHHHHHhCC--ccEeeccchhhhhhccccccccCccceeeccchhhhcccccccccceeeeeeecc
Confidence 47899999999999999999865 6899999 88888776 69999999988 55544 988875 677776
Q ss_pred -ChhHHHHHHHHHHhhCCCCCCCcEEEE
Q 044482 248 -SDEQCLKILKNCYDALPKSRKHGRTQL 274 (345)
Q Consensus 248 -~d~~~~~iL~~~~~aL~p~~~gG~lli 274 (345)
+.++..++|+++++.|+| ||.+++
T Consensus 116 ~~~~~~~~~l~~~~~~Lkp---gG~~i~ 140 (246)
T d1y8ca_ 116 IDSDDLKKYFKAVSNHLKE---GGVFIF 140 (246)
T ss_dssp CSHHHHHHHHHHHHTTEEE---EEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCC---CeEEEE
Confidence 466778899999999999 998775
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.52 E-value=2.6e-14 Score=119.81 Aligned_cols=104 Identities=10% Similarity=0.095 Sum_probs=86.8
Q ss_pred HHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------------------CceEEeccC
Q 044482 171 LEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------------------CVEHVEGDM 228 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------------------ri~~~~gd~ 228 (345)
...+. ..+..+|||||||+|..+..|+++ +.+++++|+ +.+++.|+ .+++..+|+
T Consensus 13 ~~~l~-~~~~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 89 (201)
T d1pjza_ 13 WSSLN-VVPGARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDF 89 (201)
T ss_dssp HHHHC-CCTTCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECC
T ss_pred HHHcC-CCCCCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccc
Confidence 44444 667789999999999999999987 578999999 88887765 357889998
Q ss_pred CcCCC---CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCC
Q 044482 229 FVNVP---SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLP 281 (345)
Q Consensus 229 ~~~~p---~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~ 281 (345)
++..+ .. |+|+++.++|++++++....++++++.||| ||++++. .....
T Consensus 90 ~~l~~~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~Lkp---gG~l~l~-~~~~~ 142 (201)
T d1pjza_ 90 FALTARDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQ---ACSGLLI-TLEYD 142 (201)
T ss_dssp SSSTHHHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCS---EEEEEEE-EESSC
T ss_pred cccccccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCC---CcEEEEE-Ecccc
Confidence 87333 23 999999999999999999999999999999 9998887 55443
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.52 E-value=2.4e-14 Score=125.02 Aligned_cols=102 Identities=18% Similarity=0.268 Sum_probs=85.5
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc-CCCCC-C
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~-~~p~~-D 236 (345)
..+...+. ..+..+|||||||+|.++..++++. .+++++|+ +.|++.|+ ++++..+|+.+ ++++. |
T Consensus 31 ~~~~~~~~-~~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~~~~~fD 107 (251)
T d1wzna1 31 EEIFKEDA-KREVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFD 107 (251)
T ss_dssp HHHHHHTC-SSCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCCCCSCEE
T ss_pred HHHHHHhc-CCCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccccccccchheehhhhhcccccccc
Confidence 34555555 5566799999999999999999875 47999999 88998777 69999999988 66655 9
Q ss_pred EEEec-cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTK-SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~-~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++. +++|+++.++..++|+++++.|+| ||++++.
T Consensus 108 ~I~~~~~~~~~~~~~~~~~~L~~~~~~Lkp---gG~lii~ 144 (251)
T d1wzna1 108 AVTMFFSTIMYFDEEDLRKLFSKVAEALKP---GGVFITD 144 (251)
T ss_dssp EEEECSSGGGGSCHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred hHhhhhhhhhcCChHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 98885 688888888889999999999999 9988774
|
| >d1tw3a1 a.4.5.29 (A:14-98) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.43 E-value=4.6e-15 Score=107.43 Aligned_cols=76 Identities=12% Similarity=0.067 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-eeecCC
Q 044482 19 LQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-MYNLFP 97 (345)
Q Consensus 19 ~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-~y~~t~ 97 (345)
...+|..++++++|+++| |||+| .+| |.|++|||+++|+ +++.+.|+||+|++.|+|+++++ .|++|+
T Consensus 8 ~l~~~~~~~aL~~av~L~-ifd~l-~~g--p~s~~eLA~~~g~-------~~~~l~rlLr~l~a~gl~~e~~~~~y~lt~ 76 (85)
T d1tw3a1 8 RLGSLHTPMVVRTAATLR-LVDHI-LAG--ARTVKALAARTDT-------RPEALLRLIRHLVAIGLLEEDAPGEFVPTE 76 (85)
T ss_dssp HHHCSHHHHHHHHHHHTT-HHHHH-HTT--CCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEETTEEEECT
T ss_pred HHHchHHHHHHHHHHHcC-cHHHh-ccC--CCCHHHHHHHhCc-------ChhHHHHHHHHHHHCCCeEecCCCeEecCH
Confidence 457889999999999999 99999 653 7999999999999 79999999999999999988765 999999
Q ss_pred Cccccccc
Q 044482 98 GAKERTME 105 (345)
Q Consensus 98 ~s~~l~~~ 105 (345)
.|+.+.+|
T Consensus 77 ~s~~L~~D 84 (85)
T d1tw3a1 77 VGELLADD 84 (85)
T ss_dssp TGGGGSTT
T ss_pred HHHHhhcC
Confidence 99987665
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=2.5e-13 Score=117.13 Aligned_cols=128 Identities=9% Similarity=-0.029 Sum_probs=98.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------------------CceEEeccCC
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------------------CVEHVEGDMF 229 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------------------ri~~~~gd~~ 229 (345)
.....+|||+|||+|..+..|+++ +.+++++|+ |.+|+.++ +++++.+|++
T Consensus 43 ~~~~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~ 120 (229)
T d2bzga1 43 GKSGLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIF 120 (229)
T ss_dssp TCCSCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGG
T ss_pred CCCCCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchh
Confidence 456689999999999999999986 568999999 77776431 6889999998
Q ss_pred c--CCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcC
Q 044482 230 V--NVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFP 305 (345)
Q Consensus 230 ~--~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 305 (345)
+ +.+.+ |+|+...++|++++++....+++++++|+| ||++++. ....+......
T Consensus 121 ~l~~~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp---gG~~~l~-~~~~~~~~~~g------------------ 178 (229)
T d2bzga1 121 DLPRTNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK---KFQYLLC-VLSYDPTKHPG------------------ 178 (229)
T ss_dssp GGGGSCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE---EEEEEEE-EEECCTTTCCC------------------
T ss_pred hccccccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC---cceEEEE-EcccCCCCCCC------------------
Confidence 8 23333 999999999999999999999999999999 9998887 55433221100
Q ss_pred CCccCCHHHHHHHHHHCCCCceEE
Q 044482 306 QAKGRTAGEFKALAMAAGFGTIKV 329 (345)
Q Consensus 306 ~~~~rt~~e~~~ll~~aGf~~~~~ 329 (345)
.-...+.+|++++++. +|.+..+
T Consensus 179 pp~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 179 PPFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp SSCCCCHHHHHHHHTT-TEEEEEE
T ss_pred CCCCCCHHHHHHHhcC-CCEEEEE
Confidence 0112478899999965 6765444
|
| >d1fp2a1 a.4.5.29 (A:8-108) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.41 E-value=3.3e-15 Score=111.43 Aligned_cols=81 Identities=12% Similarity=0.046 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe---Eeeec
Q 044482 19 LQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV---VMYNL 95 (345)
Q Consensus 19 ~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~---~~y~~ 95 (345)
+..+|+.+++|++|++|| |||.|...| .|+|++|||+++++ ++.+++.+.|+||+|++.|+|++.. ++|+|
T Consensus 16 ~~~gf~~s~aL~~aveLg-i~d~l~~~~-~p~t~~eLa~~~~~----~~~~~~~L~RlLR~L~~~gi~~~~~~~~~~Y~l 89 (101)
T d1fp2a1 16 HIYAFIDSMSLKWAVEMN-IPNIIQNHG-KPISLSNLVSILQV----PSSKIGNVRRLMRYLAHNGFFEIITKEEESYAL 89 (101)
T ss_dssp HHTTHHHHHHHHHHHHTT-HHHHHHHHT-SCEEHHHHHHHHTC----CGGGHHHHHHHHHHHHHTTSEEEEESSSEEEEE
T ss_pred HHHhHHHHHHHHHHHHcC-cHHHHHHcC-CCCCHHHHHHHcCC----CCccchHHHHHHHHHHhCCceeeecCCCCeEec
Confidence 455899999999999999 999994343 48999999999998 2224567999999999999997653 48999
Q ss_pred CCCccccccc
Q 044482 96 FPGAKERTME 105 (345)
Q Consensus 96 t~~s~~l~~~ 105 (345)
||+|+.|.++
T Consensus 90 t~~s~~Lv~~ 99 (101)
T d1fp2a1 90 TVASELLVRG 99 (101)
T ss_dssp CHHHHTTSTT
T ss_pred CHHHHHhhcC
Confidence 9999876655
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.41 E-value=7.2e-14 Score=122.32 Aligned_cols=136 Identities=13% Similarity=-0.033 Sum_probs=93.1
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-Cce---------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-CVE--------------------------------- 222 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-ri~--------------------------------- 222 (345)
....+|||||||+|.++..++.... .+++++|+ +.+++.|+ +++
T Consensus 50 ~~g~~vLDlGcG~G~~~~~~~~~~~-~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (257)
T d2a14a1 50 LQGDTLIDIGSGPTIYQVLAACDSF-QDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLR 128 (257)
T ss_dssp CCEEEEEESSCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred CCCCEEEEECCCCCHhHHHHhcccc-CcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHh
Confidence 3457899999999998877765542 37999999 78887665 110
Q ss_pred -----EEe----ccCCc-CCCCC--CEEEeccccccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCch
Q 044482 223 -----HVE----GDMFV-NVPSG--QAIFTKSVLLNWSD--EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSS 288 (345)
Q Consensus 223 -----~~~----gd~~~-~~p~~--D~i~~~~vlh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~ 288 (345)
... .+... +.+.+ |+|++..++||.+. ++...+++++++.||| ||.+++. +.........
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~~~Lkp---GG~li~~-~~~~~~~~~~-- 202 (257)
T d2a14a1 129 AAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLLKP---GGHLVTT-VTLRLPSYMV-- 202 (257)
T ss_dssp HHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EESSCCEEEE--
T ss_pred hhhhcccccccccccccccccCCcccEEeehhhHHHhcccHHHHHHHHHHHHhccCC---CcEEEEE-Eeccccccee--
Confidence 111 11111 33433 99999999999763 4667899999999999 9999998 7643221000
Q ss_pred hhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEEec
Q 044482 289 INRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVICR 332 (345)
Q Consensus 289 ~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~ 332 (345)
.+. .. .....+.++++++|++|||+++++...
T Consensus 203 -------~~~----~~-~~~~~~~~~~~~~l~~aGf~v~~~~~~ 234 (257)
T d2a14a1 203 -------GKR----EF-SCVALEKGEVEQAVLDAGFDIEQLLHS 234 (257)
T ss_dssp -------TTE----EE-ECCCCCHHHHHHHHHHTTEEEEEEEEE
T ss_pred -------ccc----cc-cccCCCHHHHHHHHHHCCCEEEEEEEe
Confidence 000 00 122358999999999999998887544
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=5e-13 Score=118.62 Aligned_cols=150 Identities=12% Similarity=-0.009 Sum_probs=94.6
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHH----HCCCC--eEEEeeh-hhHhhhCC----------Cc--eEEec
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVN----TYPQI--TGINFDL-PYVIKNAP----------CV--EHVEG 226 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~----~~p~~--~~~~~Dl-p~~i~~a~----------ri--~~~~g 226 (345)
..+.+++.+...+...+|||||||+|.++..+++ ++|+. +++++|. +.+++.++ ++ .+...
T Consensus 27 ~l~~~l~~l~~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~ 106 (280)
T d1jqea_ 27 KLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKE 106 (280)
T ss_dssp THHHHTTTTTTTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECS
T ss_pred HHHHHHHHhccCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhh
Confidence 3344544443233445899999999998777654 46664 5689998 77777654 22 22333
Q ss_pred cCC-------cCCCC-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccc
Q 044482 227 DMF-------VNVPS-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLD 297 (345)
Q Consensus 227 d~~-------~~~p~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d 297 (345)
++. .+.+. . |+|++.++|||++|. .++|+++++.|+| ||.++|. ..- . ..... .....
T Consensus 107 ~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~--~~~l~~l~~~Lkp---gG~l~i~-~~~---~-~~~~~---~l~~~ 173 (280)
T d1jqea_ 107 TSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDI--PATLKFFHSLLGT---NAKMLII-VVS---G-SSGWD---KLWKK 173 (280)
T ss_dssp CHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCH--HHHHHHHHHTEEE---EEEEEEE-EEC---T-TSHHH---HHHHH
T ss_pred hhhhhcchhcccCCCCceeEEEEccceecCCCH--HHHHHHHHhhCCC---CCEEEEE-Eec---C-cchHH---HHHHH
Confidence 321 12333 3 999999999999886 4789999999999 9998888 431 1 11110 00001
Q ss_pred h-hhhhhcCCCccCCHHHHHHHHHHCCCCceE
Q 044482 298 I-VMYDLFPQAKGRTAGEFKALAMAAGFGTIK 328 (345)
Q Consensus 298 ~-~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~ 328 (345)
+ ...........++.++|.++|++.||+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~L~~~G~~~~~ 205 (280)
T d1jqea_ 174 YGSRFPQDDLCQYITSDDLTQMLDNLGLKYEC 205 (280)
T ss_dssp HGGGSCCCTTSCCCCHHHHHHHHHHHTCCEEE
T ss_pred HHHhcCCCcccccCCHHHHHHHHHHCCCceEE
Confidence 0 011111123457889999999999998644
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=1.1e-12 Score=111.42 Aligned_cols=142 Identities=9% Similarity=-0.041 Sum_probs=98.8
Q ss_pred hccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC---CEEEe
Q 044482 173 IYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG---QAIFT 240 (345)
Q Consensus 173 ~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~---D~i~~ 240 (345)
.++ +.+..+|||||||+|.++..+++..|+.+++++|+ |.+++.++ ++.++.+|... +.+.. .+.++
T Consensus 51 ~l~-lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d~~~~~~~~~~~~~vd~v 129 (209)
T d1nt2a_ 51 RLK-LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIVEKVDLI 129 (209)
T ss_dssp CCC-CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTCCCEEEE
T ss_pred cCC-CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEeeccCccccccccceEEEE
Confidence 355 77889999999999999999999999999999999 88888765 78899999877 34422 33333
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
.+.++++.+. ..+++++++.||| ||+++|. +.....+...+.. ...++..+.+
T Consensus 130 ~~~~~~~~~~--~~~l~~~~~~Lkp---gG~l~i~-~~~~~~d~~~~~~--------------------~~~~~~~~~l- 182 (209)
T d1nt2a_ 130 YQDIAQKNQI--EILKANAEFFLKE---KGEVVIM-VKARSIDSTAEPE--------------------EVFKSVLKEM- 182 (209)
T ss_dssp EECCCSTTHH--HHHHHHHHHHEEE---EEEEEEE-EEHHHHCTTSCHH--------------------HHHHHHHHHH-
T ss_pred EecccChhhH--HHHHHHHHHHhcc---CCeEEEE-EEccccCCCCCHH--------------------HHHHHHHHHH-
Confidence 3455555544 5789999999999 9999998 5322111111000 0011222333
Q ss_pred HCCCCceEEEecCC---ceEEEEEE
Q 044482 321 AAGFGTIKVICRSY---CYWVIEFY 342 (345)
Q Consensus 321 ~aGf~~~~~~~~~~---~~~vi~~~ 342 (345)
++||++++...+.+ .|.+|.++
T Consensus 183 ~~gf~i~E~i~L~P~~~~H~~v~~~ 207 (209)
T d1nt2a_ 183 EGDFKIVKHGSLMPYHRDHIFIHAY 207 (209)
T ss_dssp HTTSEEEEEEECTTTCTTEEEEEEE
T ss_pred HcCCEEEEEEccCCCccCcEEEEEE
Confidence 47999999888854 46666654
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.38 E-value=1.7e-13 Score=118.76 Aligned_cols=91 Identities=18% Similarity=0.169 Sum_probs=77.0
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---CceEEeccCCc-CCCCC--CEEEe-ccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---CVEHVEGDMFV-NVPSG--QAIFT-KSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---ri~~~~gd~~~-~~p~~--D~i~~-~~vlh~~~d 249 (345)
.+..+|||||||+|.++..+++. ..+++++|+ +.+++.|+ ...++.+|+.+ +++++ |+|++ ..++||++|
T Consensus 41 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~~~~~~~~~~~~l~~~~~~fD~ii~~~~~~~~~~d 118 (246)
T d2avna1 41 KNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLALGDVLSYVEN 118 (246)
T ss_dssp CSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHTCSCEEECCTTSCCSCTTCEEEEEECSSHHHHCSC
T ss_pred CCCCEEEEECCCCchhccccccc--ceEEEEeecccccccccccccccccccccccccccccccccceeeecchhhhhhh
Confidence 35578999999999999999876 568999999 89999888 34577889887 77754 99987 579999988
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ ++|+++++.|+| ||.+++.
T Consensus 119 ~~--~~l~~i~r~Lk~---gG~~ii~ 139 (246)
T d2avna1 119 KD--KAFSEIRRVLVP---DGLLIAT 139 (246)
T ss_dssp HH--HHHHHHHHHEEE---EEEEEEE
T ss_pred HH--HHHHHHHhhcCc---CcEEEEE
Confidence 75 689999999999 9988876
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.37 E-value=4.4e-13 Score=118.43 Aligned_cols=88 Identities=15% Similarity=0.146 Sum_probs=77.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-CCCCC--CEEEeccccccCCh
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-NVPSG--QAIFTKSVLLNWSD 249 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~~p~~--D~i~~~~vlh~~~d 249 (345)
....+|||||||+|.++..+++.+|+.+++++|+ +.+++.|+ +++++.+|+.+ +++++ |+|++.+++|+
T Consensus 83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~--- 159 (268)
T d1p91a_ 83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAPCK--- 159 (268)
T ss_dssp TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHCTTSEEEECCTTSCSBCTTCEEEEEEESCCCC---
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcccccccceeeehhhccCCCCCEEEEeecCCHHH---
Confidence 3557999999999999999999999999999999 88888776 89999999988 77755 99999888876
Q ss_pred hHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 250 EQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 250 ~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+++++++||| ||++++. .+
T Consensus 160 ------~~e~~rvLkp---gG~l~~~-~p 178 (268)
T d1p91a_ 160 ------AEELARVVKP---GGWVITA-TP 178 (268)
T ss_dssp ------HHHHHHHEEE---EEEEEEE-EE
T ss_pred ------HHHHHHHhCC---CcEEEEE-ee
Confidence 4678899999 9999998 54
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.37 E-value=9.4e-13 Score=110.56 Aligned_cols=100 Identities=17% Similarity=0.187 Sum_probs=80.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCCCC-
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVPSG- 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p~~- 235 (345)
-+++.++ .....+|||||||+|.++..+++..| +++++|+ +.+++.++ ++++..+|+++++++.
T Consensus 43 lLi~~l~-~~~~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~~ 119 (194)
T d1dusa_ 43 ILVENVV-VDKDDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDRK 119 (194)
T ss_dssp HHHHHCC-CCTTCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTSC
T ss_pred HHHHhCC-cCCCCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccCC
Confidence 3556666 56678999999999999999999887 4677787 77766554 6899999999866644
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++.-.+|+. .+...++++++.+.|+| ||++++.
T Consensus 120 fD~Ii~~~p~~~~-~~~~~~~l~~~~~~Lkp---gG~l~i~ 156 (194)
T d1dusa_ 120 YNKIITNPPIRAG-KEVLHRIIEEGKELLKD---NGEIWVV 156 (194)
T ss_dssp EEEEEECCCSTTC-HHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ceEEEEcccEEec-chhhhhHHHHHHHhcCc---CcEEEEE
Confidence 999998887754 44457899999999999 9998776
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.37 E-value=7.1e-13 Score=115.91 Aligned_cols=100 Identities=14% Similarity=0.091 Sum_probs=80.8
Q ss_pred HHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC-C-C
Q 044482 170 ILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP-S-G 235 (345)
Q Consensus 170 i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~-~ 235 (345)
+++.+. +...+|||||||+|..+..+++... .+++++|+ +.+++.|+ ++.+..+|++. ++. . .
T Consensus 17 lI~~~~--~~~~~VLDlGCG~G~~~~~~~~~~~-~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~ 93 (252)
T d1ri5a_ 17 LIRLYT--KRGDSVLDLGCGKGGDLLKYERAGI-GEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKE 93 (252)
T ss_dssp HHHHHC--CTTCEEEEETCTTTTTHHHHHHHTC-SEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSC
T ss_pred HHHHhC--CCcCEEEEecccCcHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhccccccc
Confidence 445443 4567999999999999999988754 37999999 88888775 58899999987 443 3 3
Q ss_pred -CEEEeccccccC--ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNW--SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~--~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++..++||+ +.++...+|+++++.|+| ||++++.
T Consensus 94 fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~---gG~~i~~ 133 (252)
T d1ri5a_ 94 FDVISSQFSFHYAFSTSESLDIAQRNIARHLRP---GGYFIMT 133 (252)
T ss_dssp EEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred ceEEEEcceeeecCCCHHHHHHHHHHHhceeCC---CCEEEEE
Confidence 999999999987 345677899999999999 9988874
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.31 E-value=4e-13 Score=115.87 Aligned_cols=130 Identities=11% Similarity=-0.023 Sum_probs=89.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc---CCCCC--CEEE-----
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV---NVPSG--QAIF----- 239 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~---~~p~~--D~i~----- 239 (345)
...+|||||||+|..+..++++.| .+++++|+ |.+++.|+ ++.++.+|+.. +++.+ |.|+
T Consensus 53 ~g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~~ 131 (229)
T d1zx0a1 53 KGGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTYP 131 (229)
T ss_dssp TCEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCCC
T ss_pred CCCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeecccc
Confidence 457999999999999999998765 47999999 88888776 56777776553 55543 6665
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHH
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALA 319 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll 319 (345)
....++|+.+. ..+++++++.||| ||++++. +...... ......+ .......+.+...|
T Consensus 132 ~~~~~~~~~~~--~~~~~~~~r~Lkp---GG~~~~~-~~~~~~~-------~~~~~~~--------~~~~~~~~~~~~~l 190 (229)
T d1zx0a1 132 LSEETWHTHQF--NFIKNHAFRLLKP---GGVLTYC-NLTSWGE-------LMKSKYS--------DITIMFEETQVPAL 190 (229)
T ss_dssp CBGGGTTTHHH--HHHHHTHHHHEEE---EEEEEEC-CHHHHHH-------HTTTTCS--------CHHHHHHHHTHHHH
T ss_pred cccccccccCH--HHHHHHHHHHcCC---CcEEEEE-ecCCcch-------hhhhhhh--------hcchhhhhHHHHHH
Confidence 56777777665 4789999999999 9988876 3221100 0000001 11111245667788
Q ss_pred HHCCCCceEEE
Q 044482 320 MAAGFGTIKVI 330 (345)
Q Consensus 320 ~~aGf~~~~~~ 330 (345)
.++||+..++.
T Consensus 191 ~~agF~~~~i~ 201 (229)
T d1zx0a1 191 LEAGFRRENIR 201 (229)
T ss_dssp HHTTCCGGGEE
T ss_pred HHCCCeeEEEE
Confidence 89999977654
|
| >d1fp1d1 a.4.5.29 (D:19-128) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.30 E-value=1.5e-13 Score=102.89 Aligned_cols=86 Identities=19% Similarity=0.097 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccCC--CchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAGG--LGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---- 91 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~gg--~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---- 91 (345)
++..+|..+|+|++|++|| |+|+|...|| .++|++|||.+++. +..+++.+..|.|+||.|++.|+|++...
T Consensus 12 ~L~~~~v~pMaLk~AieLg-I~diI~~~G~~~~~ls~~ela~~lp~-~~~~p~~~~~L~RiLRlLas~~vf~~~~~~~~~ 89 (110)
T d1fp1d1 12 VLTTNLVYPAVLNAAIDLN-LFEIIAKATPPGAFMSPSEIASKLPA-STQHSDLPNRLDRMLRLLASYSVLTSTTRTIED 89 (110)
T ss_dssp HHHHTTHHHHHHHHHHHTT-HHHHHHTCSSTTCCBCHHHHHTTSCG-GGCCTTHHHHHHHHHHHHHHTTSEEEEEEECTT
T ss_pred HHHHhhHHHHHHHHHHHcC-CHHHHHHcCCCCCCCCHHHHHHhCCC-CCCCccHHHHHHHHHHHHHHcCccccccccCCC
Confidence 5778899999999999999 9999954443 34899999999886 33455556689999999999999975431
Q ss_pred -----eeecCCCccccccc
Q 044482 92 -----MYNLFPGAKERTME 105 (345)
Q Consensus 92 -----~y~~t~~s~~l~~~ 105 (345)
.|.+||+|+.|.++
T Consensus 90 g~~e~~Y~Ltpvsk~Lv~d 108 (110)
T d1fp1d1 90 GGAERVYGLSMVGKYLVPD 108 (110)
T ss_dssp SCEEEEEEECTTGGGGSTT
T ss_pred CCeeeEEecchhhHhhcCC
Confidence 69999999997665
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.29 E-value=4.3e-12 Score=115.07 Aligned_cols=109 Identities=16% Similarity=0.157 Sum_probs=87.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------CceEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------CVEHVEGD 227 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------ri~~~~gd 227 (345)
...+++.+. .....+|||||||+|..+..+++.+|..+++++|+ +.+++.|+ +++|+.||
T Consensus 140 ~~~~~~~~~-l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd 218 (328)
T d1nw3a_ 140 VAQMIDEIK-MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGD 218 (328)
T ss_dssp HHHHHHHSC-CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECC
T ss_pred HHHHHHHcC-CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECc
Confidence 346777777 77888999999999999999999999889999999 77766543 58999999
Q ss_pred CCc-CCC----CCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 228 MFV-NVP----SGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 228 ~~~-~~p----~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+.+ ++. ++|+|++.+.+| + ++....|+++++.||| ||+|++. +.+.+..
T Consensus 219 ~~~~~~~~~~~~advi~~~~~~f-~--~~~~~~l~e~~r~LKp---Gg~iv~~-~~~~~~~ 272 (328)
T d1nw3a_ 219 FLSEEWRERIANTSVIFVNNFAF-G--PEVDHQLKERFANMKE---GGRIVSS-KPFAPLN 272 (328)
T ss_dssp TTSHHHHHHHHHCSEEEECCTTT-C--HHHHHHHHHHHTTCCT---TCEEEES-SCSSCTT
T ss_pred ccccccccccCcceEEEEcceec-c--hHHHHHHHHHHHhCCC---CcEEEEe-cccCCCC
Confidence 987 543 248888876653 3 3346789999999999 9999998 8766543
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.28 E-value=9.9e-13 Score=115.75 Aligned_cols=134 Identities=11% Similarity=-0.033 Sum_probs=92.6
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-C-----------------------------------
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-C----------------------------------- 220 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-r----------------------------------- 220 (345)
....+|||||||+|.+....+.++.. +++++|. +.+++.++ +
T Consensus 53 ~~g~~vLDiGcG~g~~~~~~~~~~~~-~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (263)
T d2g72a1 53 VSGRTLIDIGSGPTVYQLLSACSHFE-DITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLR 131 (263)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCS-EEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHH
T ss_pred CCCcEEEEeccCCCHHHHHHhcccCC-eEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhh
Confidence 34679999999999887655555433 7999999 88877554 0
Q ss_pred ---ceEEeccCCcC-------CCCC--CEEEeccccccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCC
Q 044482 221 ---VEHVEGDMFVN-------VPSG--QAIFTKSVLLNWSD--EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEF 286 (345)
Q Consensus 221 ---i~~~~gd~~~~-------~p~~--D~i~~~~vlh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~ 286 (345)
......|+.++ .+.+ |+|++..+||+.+. ++..++|+++++.||| ||.+++. +.......
T Consensus 132 ~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~~~~~LkP---GG~li~~-~~~~~~~~-- 205 (263)
T d2g72a1 132 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRP---GGHLLLI-GALEESWY-- 205 (263)
T ss_dssp HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEE---EEEEEEE-EEESCCEE--
T ss_pred hhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHHHHHHHHHHHHcCC---CCEEEEe-cccCCccc--
Confidence 12334565542 1123 99999999998863 4678899999999999 9999998 65432110
Q ss_pred chhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCCCCceEEE
Q 044482 287 SSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAGFGTIKVI 330 (345)
Q Consensus 287 ~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aGf~~~~~~ 330 (345)
...... . .....|.++++++|+++||++++..
T Consensus 206 --------~~~~~~---~-~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 206 --------LAGEAR---L-TVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp --------EETTEE---E-ECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred --------ccCCcc---c-ccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 000000 0 1123689999999999999987654
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.27 E-value=5.5e-12 Score=106.39 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=76.1
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC--CEEEeccccc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~--D~i~~~~vlh 245 (345)
..|||||||+|.++..+++++|+..++++|+ +.++..+. ++.++.+|+.. .++++ |.|++.+...
T Consensus 31 PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp~P 110 (204)
T d2fcaa1 31 PIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFSDP 110 (204)
T ss_dssp CEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESCCC
T ss_pred ceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccccc
Confidence 5799999999999999999999999999998 66665443 79999999876 25654 9988888876
Q ss_pred cCChhHH------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 246 NWSDEQC------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++...+. ..+|+.+++.||| ||.|+|.
T Consensus 111 ~~k~~h~k~Rl~~~~~l~~~~r~Lkp---gG~l~i~ 143 (204)
T d2fcaa1 111 WPKKRHEKRRLTYSHFLKKYEEVMGK---GGSIHFK 143 (204)
T ss_dssp CCSGGGGGGSTTSHHHHHHHHHHHTT---SCEEEEE
T ss_pred cchhhhcchhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence 5554321 4689999999999 9999888
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.26 E-value=5.8e-12 Score=109.80 Aligned_cols=138 Identities=17% Similarity=0.185 Sum_probs=96.9
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEE
Q 044482 154 LFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHV 224 (345)
Q Consensus 154 ~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~ 224 (345)
.|...-+..++.....+ ..+. ....+|||+|||+|.++..+++. +.+++++|+ |.+++.|+ ++++.
T Consensus 98 aFGTG~H~TT~l~l~~l-~~~~--~~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n~~~~~~~ 172 (254)
T d2nxca1 98 AFGTGHHETTRLALKAL-ARHL--RPGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRNGVRPRFL 172 (254)
T ss_dssp ----CCSHHHHHHHHHH-HHHC--CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHTTCCCEEE
T ss_pred ccCccccchhhHHHHHH-Hhhc--CccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHcCCceeEE
Confidence 45544433333333333 2222 35679999999999999988765 458999999 88888776 67888
Q ss_pred eccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 225 EGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 225 ~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
.+|+.+..+.+ |+|+++...+ ....+++++++.|+| ||++++. +.+..
T Consensus 173 ~~d~~~~~~~~~fD~V~ani~~~-----~l~~l~~~~~~~Lkp---GG~lilS-gil~~--------------------- 222 (254)
T d2nxca1 173 EGSLEAALPFGPFDLLVANLYAE-----LHAALAPRYREALVP---GGRALLT-GILKD--------------------- 222 (254)
T ss_dssp ESCHHHHGGGCCEEEEEEECCHH-----HHHHHHHHHHHHEEE---EEEEEEE-EEEGG---------------------
T ss_pred eccccccccccccchhhhccccc-----cHHHHHHHHHHhcCC---CcEEEEE-ecchh---------------------
Confidence 99987755533 9998764433 346789999999999 9999887 43210
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEecCC
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICRSY 334 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~~~ 334 (345)
..+++.+.++++||++++......
T Consensus 223 --------~~~~v~~~~~~~Gf~~~~~~~~~~ 246 (254)
T d2nxca1 223 --------RAPLVREAMAGAGFRPLEEAAEGE 246 (254)
T ss_dssp --------GHHHHHHHHHHTTCEEEEEEEETT
T ss_pred --------hHHHHHHHHHHCCCEEEEEEEECC
Confidence 146678899999999988876654
|
| >d1qzza1 a.4.5.29 (A:10-101) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.24 E-value=9.8e-14 Score=101.52 Aligned_cols=74 Identities=8% Similarity=-0.034 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE---eeec
Q 044482 19 LQNLFNQSMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV---MYNL 95 (345)
Q Consensus 19 ~~~~f~~~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~---~y~~ 95 (345)
...+|+.++++++|++|+ |||+| .+| |.|++|||+++++ +++.+.|+||+|+++|+|+++++ .|++
T Consensus 14 ~~~~~~~~~~L~~aveL~-ifd~L-~~g--p~t~~eLA~~~g~-------~~~~l~rLlr~L~a~gll~~~~d~~~~~~~ 82 (92)
T d1qzza1 14 NLGNLVTPMALRVAATLR-LVDHL-LAG--ADTLAGLADRTDT-------HPQALSRLVRHLTVVGVLEGGEKQGRPLRP 82 (92)
T ss_dssp TTTCCHHHHHHHHHHHTT-HHHHH-HTT--CCSHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEECCCC-CCCCEE
T ss_pred HHHchHHHHHHHHHHHcC-chHHH-hCC--CCCHHHHHHHHCc-------CchHHHHHHHHHHHCCCeeeecCCCceecc
Confidence 456889999999999999 99999 653 7999999999999 89999999999999999988754 6999
Q ss_pred CCCccccc
Q 044482 96 FPGAKERT 103 (345)
Q Consensus 96 t~~s~~l~ 103 (345)
|++++.|.
T Consensus 83 t~~g~lL~ 90 (92)
T d1qzza1 83 TRLGMLLA 90 (92)
T ss_dssp CTTGGGGS
T ss_pred cHHHHhcc
Confidence 99998754
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=1.6e-11 Score=105.12 Aligned_cols=139 Identities=13% Similarity=0.066 Sum_probs=96.1
Q ss_pred cccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC-------CceEEeccCCcC--CC--CC--CEEEec
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP-------CVEHVEGDMFVN--VP--SG--QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~--~p--~~--D~i~~~ 241 (345)
..+..+|||+|||+|.++..+++.. |+.+++++|+ |.+++.++ ++..+.+|...+ .+ .. |++++
T Consensus 71 i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~~d~~~~~~~~~~~~~vD~i~~- 149 (227)
T d1g8aa_ 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFE- 149 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEE-
T ss_pred cCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEEEECCCcccccccccceEEEEE-
Confidence 6778999999999999999999985 8889999999 88877654 567777777552 22 12 54443
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHH
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMA 321 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~ 321 (345)
.+++.+ +...+++++++.||| ||+++|. ..-...+... ..+....+.+++ .+
T Consensus 150 -d~~~~~--~~~~~l~~~~~~Lkp---gG~lvi~-~ka~~~~~~~--------------------~~~~v~~~v~~l-~~ 201 (227)
T d1g8aa_ 150 -DVAQPT--QAKILIDNAEVYLKR---GGYGMIA-VKSRSIDVTK--------------------EPEQVFREVERE-LS 201 (227)
T ss_dssp -CCCSTT--HHHHHHHHHHHHEEE---EEEEEEE-EEGGGTCTTS--------------------CHHHHHHHHHHH-HH
T ss_pred -Eccccc--hHHHHHHHHHHhccc---CCeEEEE-EECCccCCCC--------------------CHHHHHHHHHHH-HH
Confidence 444443 345789999999999 9999887 4321111110 000112334444 46
Q ss_pred CCCCceEEEecCC---ceEEEEEEcC
Q 044482 322 AGFGTIKVICRSY---CYWVIEFYKP 344 (345)
Q Consensus 322 aGf~~~~~~~~~~---~~~vi~~~k~ 344 (345)
.||++++...+.+ .|.++.++|+
T Consensus 202 ~gf~iie~i~L~p~~~~H~~vv~rK~ 227 (227)
T d1g8aa_ 202 EYFEVIERLNLEPYEKDHALFVVRKT 227 (227)
T ss_dssp TTSEEEEEEECTTTSSSEEEEEEECC
T ss_pred cCCEEEEEEcCCCCCCceEEEEEEeC
Confidence 7999999888754 4899999985
|
| >d1kyza1 a.4.5.29 (A:13-119) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Plant O-methyltransferase, N-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.19 E-value=4.4e-13 Score=99.93 Aligned_cols=84 Identities=23% Similarity=0.210 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHhhhhccccccceeeccC-CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe------
Q 044482 18 RLQNLFNQSMHNHTAIGFEELNELVDVAG-GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV------ 90 (345)
Q Consensus 18 ~~~~~f~~~~~l~~a~~l~~lfd~L~~~g-g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~------ 90 (345)
|+..+|..+|+|++|++|| |||+|...| +.+.|+.|||.+++.- +++.|..++|+||+|++.|+|++..
T Consensus 13 ~L~~~~v~pmaLk~AieLg-I~DiI~~~G~~~~ls~~eia~~l~~~---~p~~~~~L~RilR~Las~~vf~~~~~~~~dg 88 (107)
T d1kyza1 13 QLASASVLPMILKSALELD-LLEIIAKAGPGAQISPIEIASQLPTT---NPDAPVMLDRMLRLLACYIILTCSVRTQQDG 88 (107)
T ss_dssp HHHTTTHHHHHHHHHHHTT-HHHHHHTTCTTCCBCHHHHHHTSSCC---CTTHHHHHHHHHHHHHHTTSEEEEEEECTTS
T ss_pred HHHHhhHHHHHHHHHHHcC-CHHHHHHcCCCCCCCHHHHHHhcCCC---CCcchHHHHHHHHHHHhcCceEEeeecCCCC
Confidence 6788899999999999999 999995433 3467999999999882 3445678999999999999997642
Q ss_pred ---EeeecCCCccccccc
Q 044482 91 ---VMYNLFPGAKERTME 105 (345)
Q Consensus 91 ---~~y~~t~~s~~l~~~ 105 (345)
..|.+||+|+.|.++
T Consensus 89 ~~~~~Y~LTpvsk~Lv~d 106 (107)
T d1kyza1 89 KVQRLYGLATVAKYLVKN 106 (107)
T ss_dssp CEEEEEEECHHHHHHSCC
T ss_pred CeeeEEecchhHHhhcCC
Confidence 169999999986654
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.19 E-value=1.2e-11 Score=110.34 Aligned_cols=94 Identities=19% Similarity=0.233 Sum_probs=72.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCC--CC-C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVP--SG-Q 236 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p--~~-D 236 (345)
..+..+|||||||+|..+..|+++ +.+++++|+ +.|++.|+ +..+...|+.. ..| +. |
T Consensus 54 ~~~~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd 131 (292)
T d1xvaa_ 54 QHGCHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFD 131 (292)
T ss_dssp HTTCCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEE
T ss_pred hcCCCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCce
Confidence 345579999999999999999987 468999999 88888765 34455666654 233 34 7
Q ss_pred EEEe-ccccccCCh-----hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFT-KSVLLNWSD-----EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~-~~vlh~~~d-----~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|++ .++++|+++ ++...+|+++++.|+| ||.+++.
T Consensus 132 ~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp---gG~li~~ 173 (292)
T d1xvaa_ 132 AVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRP---GGLLVID 173 (292)
T ss_dssp EEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEEecCchhhcCCcccChHHHHHHHHHHHHHcCc---CcEEEEe
Confidence 7765 468888765 4577899999999999 9987763
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.17 E-value=7e-11 Score=99.47 Aligned_cols=92 Identities=21% Similarity=0.251 Sum_probs=72.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc---CCCCC--CEEEecccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV---NVPSG--QAIFTKSVL 244 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~---~~p~~--D~i~~~~vl 244 (345)
...|||||||+|.++..+++.+|+..++++|+ +.++..+. ++.++.+|+.+ .+|.+ |.|++...-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 35799999999999999999999999999998 66666543 79999999866 24543 877765543
Q ss_pred ccCChh-H------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 245 LNWSDE-Q------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 245 h~~~d~-~------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |+.. + ...+|+.+++.|+| ||.|++.
T Consensus 112 P-w~K~~h~krRl~~~~~l~~~~~~Lkp---gG~l~i~ 145 (204)
T d1yzha1 112 P-WPKKRHEKRRLTYKTFLDTFKRILPE---NGEIHFK 145 (204)
T ss_dssp C-CCSGGGGGGSTTSHHHHHHHHHHSCT---TCEEEEE
T ss_pred c-ccchhhhhhhhhHHHHHHHHHHhCCC---CcEEEEE
Confidence 2 3322 1 14789999999999 9999887
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.15 E-value=2.3e-11 Score=103.38 Aligned_cols=96 Identities=16% Similarity=0.216 Sum_probs=79.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~ 235 (345)
..+++.++ .....+|||||||+|.++..+++.. |+.+++.+|. +.+++.|+ ++.++.+|..+..+ .+
T Consensus 65 a~~l~~l~-l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~ 143 (213)
T d1dl5a1 65 ALFMEWVG-LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFS 143 (213)
T ss_dssp HHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred HHHHHhhh-ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcccccc
Confidence 35677777 8888999999999999999999875 6789999998 88887766 78889999887444 33
Q ss_pred --CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 --QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 --D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+++.+++ +.+.|+| ||++++.
T Consensus 144 ~fD~I~~~~~~~~~p~~--------l~~~Lkp---GG~lv~p 174 (213)
T d1dl5a1 144 PYDVIFVTVGVDEVPET--------WFTQLKE---GGRVIVP 174 (213)
T ss_dssp CEEEEEECSBBSCCCHH--------HHHHEEE---EEEEEEE
T ss_pred chhhhhhhccHHHhHHH--------HHHhcCC---CcEEEEE
Confidence 999999999988753 4567999 9999885
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.14 E-value=2.3e-11 Score=112.30 Aligned_cols=110 Identities=12% Similarity=0.096 Sum_probs=83.6
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------CceE-Ee
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------CVEH-VE 225 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------ri~~-~~ 225 (345)
.+..+++.++ .....++||||||.|..+..+++.+|..+++|+|+ +.+++.|+ .+.+ ..
T Consensus 204 ~i~~Il~~l~-Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~ 282 (406)
T d1u2za_ 204 FLSDVYQQCQ-LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLK 282 (406)
T ss_dssp HHHHHHHHTT-CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEES
T ss_pred HHHHHHHHhC-CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeee
Confidence 3456677776 77788999999999999999999999889999999 88887776 1122 45
Q ss_pred ccCCc-C-----CCCCCEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCC
Q 044482 226 GDMFV-N-----VPSGQAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPES 283 (345)
Q Consensus 226 gd~~~-~-----~p~~D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~ 283 (345)
+++++ + ++.+|++++.+.+| . ++....|+++++.||| ||+|++. +.+.+..
T Consensus 283 ~~f~~~~~~d~~~~~adVV~inn~~f-~--~~l~~~L~ei~r~LKP---GGrIVs~-~~~~~~~ 339 (406)
T d1u2za_ 283 KSFVDNNRVAELIPQCDVILVNNFLF-D--EDLNKKVEKILQTAKV---GCKIISL-KSLRSLT 339 (406)
T ss_dssp SCSTTCHHHHHHGGGCSEEEECCTTC-C--HHHHHHHHHHHTTCCT---TCEEEES-SCSSCTT
T ss_pred echhhccccccccccceEEEEecccC-c--hHHHHHHHHHHHhcCC---CcEEEEe-cccCCCc
Confidence 66655 2 12348888876543 2 4456889999999999 9999998 8776544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.14 E-value=2e-11 Score=101.55 Aligned_cols=96 Identities=19% Similarity=0.101 Sum_probs=78.0
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc-CCC-CC
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV-NVP-SG 235 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~-~~p-~~ 235 (345)
.++..+. .....+|||||||+|.++..+++..+ +++++|. |.+++.|+ |++++.+|+.+ ..+ ..
T Consensus 24 ~il~~l~-~~~g~~VLDiGcGsG~~s~~lA~~~~--~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~~~~ 100 (186)
T d1l3ia_ 24 LIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRVR--RVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKIPD 100 (186)
T ss_dssp HHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTSS--EEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTSCC
T ss_pred HHHHhcC-CCCCCEEEEEECCeEcccccccccce--EEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccccCC
Confidence 3455666 67788999999999999999988754 7899999 88888765 78999999887 333 23
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++....+++ ..+++++.+.|+| ||++++.
T Consensus 101 ~D~v~~~~~~~~~-----~~~~~~~~~~Lkp---gG~lvi~ 133 (186)
T d1l3ia_ 101 IDIAVVGGSGGEL-----QEILRIIKDKLKP---GGRIIVT 133 (186)
T ss_dssp EEEEEESCCTTCH-----HHHHHHHHHTEEE---EEEEEEE
T ss_pred cCEEEEeCccccc-----hHHHHHHHHHhCc---CCEEEEE
Confidence 999988766543 4689999999999 9998887
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=4.8e-10 Score=98.25 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=96.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCCC-C-CEEEeccc--
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVPS-G-QAIFTKSV-- 243 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p~-~-D~i~~~~v-- 243 (345)
....+|||+|||+|..+..++..+|+++++++|. +..++.|+ |++++.+|++++++. . |+|+++--
T Consensus 107 ~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPYi 186 (274)
T d2b3ta1 107 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI 186 (274)
T ss_dssp SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred ccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccccCCCceeEEEecchhh
Confidence 3456899999999999999999999999999999 77777665 799999999998774 3 99988621
Q ss_pred -----------cccCCh----------hHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhh
Q 044482 244 -----------LLNWSD----------EQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYD 302 (345)
Q Consensus 244 -----------lh~~~d----------~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~ 302 (345)
+.+=+. +-..++++++.+.|+| ||.+++- . ..
T Consensus 187 ~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~---~G~l~lE--i--g~-------------------- 239 (274)
T d2b3ta1 187 DEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVS---GGFLLLE--H--GW-------------------- 239 (274)
T ss_dssp CTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEE---EEEEEEE--C--CS--------------------
T ss_pred hhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCC---CCEEEEE--E--Cc--------------------
Confidence 111010 1345788999999999 8877665 1 00
Q ss_pred hcCCCccCCHHHHHHHHHHCCCCceEEEec-CCceEEEEEE
Q 044482 303 LFPQAKGRTAGEFKALAMAAGFGTIKVICR-SYCYWVIEFY 342 (345)
Q Consensus 303 ~~~~~~~rt~~e~~~ll~~aGf~~~~~~~~-~~~~~vi~~~ 342 (345)
...+...+++++.||..+++..- .+..-+|.++
T Consensus 240 -------~q~~~v~~~l~~~gf~~i~~~kDl~g~~R~v~~r 273 (274)
T d2b3ta1 240 -------QQGEAVRQAFILAGYHDVETCRDYGDNERVTLGR 273 (274)
T ss_dssp -------SCHHHHHHHHHHTTCTTCCEEECTTSSEEEEEEE
T ss_pred -------hHHHHHHHHHHHCCCCeEEEEECCCCCceEEEEe
Confidence 01356789999999998876544 4555566553
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.13 E-value=3.8e-11 Score=104.78 Aligned_cols=98 Identities=13% Similarity=0.100 Sum_probs=83.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC------------CceEEeccCCc-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP------------CVEHVEGDMFV-N 231 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~------------ri~~~~gd~~~-~ 231 (345)
+..++..++ .....+|||+|||+|.++..|++. .|+.+++.+|. +++++.|+ +++++.+|+.+ +
T Consensus 85 ~s~Ii~~l~-i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~ 163 (264)
T d1i9ga_ 85 AAQIVHEGD-IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE 163 (264)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred HHHHHHHhC-CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc
Confidence 446777777 888899999999999999999998 79999999999 78877665 78999999987 6
Q ss_pred CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++++ |+|++ |.+++. ..+.+++++||| ||++++.
T Consensus 164 ~~~~~fDaV~l-----dlp~P~--~~l~~~~~~Lkp---GG~lv~~ 199 (264)
T d1i9ga_ 164 LPDGSVDRAVL-----DMLAPW--EVLDAVSRLLVA---GGVLMVY 199 (264)
T ss_dssp CCTTCEEEEEE-----ESSCGG--GGHHHHHHHEEE---EEEEEEE
T ss_pred ccCCCcceEEE-----ecCCHH--HHHHHHHhccCC---CCEEEEE
Confidence 7754 98875 467664 679999999999 9999888
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=1.1e-10 Score=102.36 Aligned_cols=98 Identities=18% Similarity=0.208 Sum_probs=80.8
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCC
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPS 234 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~ 234 (345)
+.-++..++ ..+..+|||+|||+|.++..+++.. |+.+++++|. |++++.|+ ++.+..+|+...++.
T Consensus 92 ~~~Ii~~l~-i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~ 170 (266)
T d1o54a_ 92 SSFIAMMLD-VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDE 170 (266)
T ss_dssp HHHHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSC
T ss_pred HHHHHHhhC-CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccc
Confidence 445777788 8889999999999999999999884 8899999999 88888776 678888887665553
Q ss_pred C--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 235 G--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 235 ~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. |.| +++.+++. .+|++++++||| ||++++.
T Consensus 171 ~~~D~V-----~~d~p~p~--~~l~~~~~~LKp---GG~lv~~ 203 (266)
T d1o54a_ 171 KDVDAL-----FLDVPDPW--NYIDKCWEALKG---GGRFATV 203 (266)
T ss_dssp CSEEEE-----EECCSCGG--GTHHHHHHHEEE---EEEEEEE
T ss_pred cceeee-----EecCCCHH--HHHHHHHhhcCC---CCEEEEE
Confidence 3 655 45777774 679999999999 9999988
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.06 E-value=7.7e-11 Score=102.13 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=79.7
Q ss_pred HHHHHHHHhhHHH----HHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------
Q 044482 154 LFNQSMQNHTAIV----MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP-------- 219 (345)
Q Consensus 154 ~f~~~m~~~~~~~----~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~-------- 219 (345)
.|...|...++.. +..++...+ ..+..+|||+|||+|.++..+++. .|+.+++.+|. +++++.|+
T Consensus 57 ~~~~~~~r~~qiiypkD~~~Ii~~l~-i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~ 135 (250)
T d1yb2a1 57 YFGRVIRRNTQIISEIDASYIIMRCG-LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYD 135 (250)
T ss_dssp GHHHHC------------------CC-CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSC
T ss_pred HHHhhCCCCCcccCHHHHHHHHHHcC-CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcC
Confidence 3445555544432 234666677 888899999999999999999987 68889999999 77777655
Q ss_pred --CceEEeccCCcCCCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 --CVEHVEGDMFVNVPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 --ri~~~~gd~~~~~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++++..+|+.+.+++. |+|++ +.+++. .+|.+++++||| ||++++.
T Consensus 136 ~~nv~~~~~Di~~~~~~~~fD~V~l-----d~p~p~--~~l~~~~~~LKp---GG~lv~~ 185 (250)
T d1yb2a1 136 IGNVRTSRSDIADFISDQMYDAVIA-----DIPDPW--NHVQKIASMMKP---GSVATFY 185 (250)
T ss_dssp CTTEEEECSCTTTCCCSCCEEEEEE-----CCSCGG--GSHHHHHHTEEE---EEEEEEE
T ss_pred CCceEEEEeeeecccccceeeeeee-----cCCchH--HHHHHHHHhcCC---CceEEEE
Confidence 7899999998866643 98875 355553 679999999999 9998877
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=3.2e-10 Score=96.81 Aligned_cols=96 Identities=22% Similarity=0.137 Sum_probs=77.1
Q ss_pred HHHHhcc-CcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcC
Q 044482 169 KILEIYK-GFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVN 231 (345)
Q Consensus 169 ~i~~~~~-~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~ 231 (345)
.+++.+. ..+...+|||||||+|..+..+++. .|..+++++|. +++++.|+ +++++.+|....
T Consensus 65 ~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~ 144 (224)
T d1i1na_ 65 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG 144 (224)
T ss_dssp HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred HHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccc
Confidence 5566552 1667789999999999999999885 67889999998 88877664 578899998874
Q ss_pred CC-CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VP-SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p-~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+ .+ |+|++...+++.+++ +.+.|+| ||++++.
T Consensus 145 ~~~~~~fD~I~~~~~~~~ip~~--------l~~~Lkp---GG~LV~p 180 (224)
T d1i1na_ 145 YAEEAPYDAIHVGAAAPVVPQA--------LIDQLKP---GGRLILP 180 (224)
T ss_dssp CGGGCCEEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred cchhhhhhhhhhhcchhhcCHH--------HHhhcCC---CcEEEEE
Confidence 44 33 999999999887653 5678999 9999886
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.89 E-value=1.4e-09 Score=90.63 Aligned_cols=94 Identities=16% Similarity=0.182 Sum_probs=71.1
Q ss_pred cccceEEecCCccH----HHHHHHHHC----CCCeEEEeeh-hhHhhhCC------------------------------
Q 044482 179 ELKKLVDVASCLGA----NMSLIVNTY----PQITGINFDL-PYVIKNAP------------------------------ 219 (345)
Q Consensus 179 ~~~~vlDiGgG~G~----~~~~l~~~~----p~~~~~~~Dl-p~~i~~a~------------------------------ 219 (345)
..-+|+++|||+|. +++.+.+.. ++.++++.|+ +..++.|+
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 44689999999998 344444432 2357899998 77777654
Q ss_pred ----------CceEEeccCCcC-CC-C-C-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ----------CVEHVEGDMFVN-VP-S-G-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ----------ri~~~~gd~~~~-~p-~-~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++.+...+...+ .+ . . |+|+|+|||++++++...++|++++++|+| ||.|++-
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf~~~~~~~vl~~l~~~L~p---GG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYFDKTTQEDILRRFVPLLKP---DGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGSCHHHHHHHHHHHGGGEEE---EEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhcCHHHHHHHHHHHHHHhCC---CcEEEEe
Confidence 244556666652 22 2 3 999999999999999999999999999999 9977765
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=1.6e-09 Score=97.30 Aligned_cols=91 Identities=16% Similarity=0.085 Sum_probs=71.3
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCC-C-CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPS-G-QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~-~-D~i~~~~vlh 245 (345)
..++|||||||+|.++..++++.+ .+++++|..++...++ +++++.+|+.+ +.|. . |+|++..+.|
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~~ 111 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMGY 111 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCBB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHHhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeeee
Confidence 457899999999999998888654 3799999844433222 79999999988 6664 3 9999888877
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEEE
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
....+ ....++..+.+.|+| ||+++
T Consensus 112 ~l~~e~~~~~~l~~~~r~Lkp---~G~ii 137 (316)
T d1oria_ 112 CLFYESMLNTVLHARDKWLAP---DGLIF 137 (316)
T ss_dssp TBTBTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccHHHHHHHHHHHHhcCCC---CeEEE
Confidence 66554 456789999999999 99876
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=1.8e-09 Score=96.93 Aligned_cols=98 Identities=16% Similarity=0.154 Sum_probs=77.9
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC--------------------CceEE
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP--------------------CVEHV 224 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~--------------------ri~~~ 224 (345)
+..|+..++ .....+|||+|||+|.++..|++. .|+.+++.+|. +++++.|+ ++.+.
T Consensus 87 ~~~Il~~l~-i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~ 165 (324)
T d2b25a1 87 INMILSMMD-INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFI 165 (324)
T ss_dssp HHHHHHHHT-CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEE
T ss_pred HHHHHHHhC-CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEE
Confidence 446778888 888999999999999999999987 68999999999 77766554 58889
Q ss_pred eccCCcC---CCCC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 225 EGDMFVN---VPSG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 225 ~gd~~~~---~p~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.+|+.+. ++.. |.|++ |.+++. ..|.+++++||| ||++++.
T Consensus 166 ~~di~~~~~~~~~~~fD~V~L-----D~p~P~--~~l~~~~~~LKp---GG~lv~~ 211 (324)
T d2b25a1 166 HKDISGATEDIKSLTFDAVAL-----DMLNPH--VTLPVFYPHLKH---GGVCAVY 211 (324)
T ss_dssp ESCTTCCC-------EEEEEE-----CSSSTT--TTHHHHGGGEEE---EEEEEEE
T ss_pred ecchhhcccccCCCCcceEee-----cCcCHH--HHHHHHHHhccC---CCEEEEE
Confidence 9998762 2333 88875 555553 579999999999 9999987
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.83 E-value=2.3e-09 Score=96.75 Aligned_cols=91 Identities=16% Similarity=0.073 Sum_probs=71.2
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCCC--CEEEeccccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPSG--QAIFTKSVLL 245 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~~--D~i~~~~vlh 245 (345)
...+|||||||+|.++..++++. .-+++++|..++++.++ +++++.+|+.+ ++|+. |+|++..+.+
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~~ 116 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMGY 116 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCBT
T ss_pred CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecce
Confidence 45789999999999998877764 34899999966655443 79999999988 77743 9999987776
Q ss_pred cCChh-HHHHHHHHHHhhCCCCCCCcEEE
Q 044482 246 NWSDE-QCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 246 ~~~d~-~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
....+ ....++..+.+.||| ||+++
T Consensus 117 ~~~~e~~~~~~~~a~~r~Lkp---gG~ii 142 (328)
T d1g6q1_ 117 FLLYESMMDTVLYARDHYLVE---GGLIF 142 (328)
T ss_dssp TBSTTCCHHHHHHHHHHHEEE---EEEEE
T ss_pred eeccchhHHHHHHHHHhccCC---CeEEE
Confidence 65544 345688888999999 99764
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.82 E-value=3.5e-09 Score=90.01 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=75.7
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCcCCC-CC--CE
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFVNVP-SG--QA 237 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~~~p-~~--D~ 237 (345)
.+++.++ .....+|||||||+|.++..+++.. .+++.+|. +..++.|+ +++++.+|.....| .+ |+
T Consensus 61 ~ml~~L~-l~~g~~VLdIG~GsGy~ta~La~l~--~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~~~~~pfD~ 137 (224)
T d1vbfa_ 61 FMLDELD-LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGYEEEKPYDR 137 (224)
T ss_dssp HHHHHTT-CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCCGGGCCEEE
T ss_pred HHHHHhh-hcccceEEEecCCCCHHHHHHHHHh--cccccccccHHHHHHHHHHHhcccccccccCchhhcchhhhhHHH
Confidence 4677777 8888999999999999999888875 46888887 77777665 89999999887555 34 99
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++...+++.++. +.+.|+| ||++++.
T Consensus 138 Iiv~~a~~~ip~~--------l~~qLk~---GGrLV~p 164 (224)
T d1vbfa_ 138 VVVWATAPTLLCK--------PYEQLKE---GGIMILP 164 (224)
T ss_dssp EEESSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred HHhhcchhhhhHH--------HHHhcCC---CCEEEEE
Confidence 9999999887653 4467999 9998875
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=8.9e-09 Score=92.09 Aligned_cols=93 Identities=14% Similarity=0.083 Sum_probs=71.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC-C-CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS-G-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~-~-D~i~~~~v 243 (345)
..+..+|||||||+|.++..++++.+ .+++++|. +.+....+ +++++.+|+.+ +.|. . |+|++..+
T Consensus 33 ~~~~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~ 111 (311)
T d2fyta1 33 IFKDKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM 111 (311)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred cCCcCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence 44567899999999999999888765 48999998 43332111 79999999988 6664 3 99999888
Q ss_pred cccCChhH-HHHHHHHHHhhCCCCCCCcEEE
Q 044482 244 LLNWSDEQ-CLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 244 lh~~~d~~-~~~iL~~~~~aL~p~~~gG~ll 273 (345)
.|....+. ...++..+.+.|+| ||+++
T Consensus 112 ~~~~~~e~~~~~~~~a~~~~Lkp---~G~ii 139 (311)
T d2fyta1 112 GYFLLFESMLDSVLYAKNKYLAK---GGSVY 139 (311)
T ss_dssp BTTBTTTCHHHHHHHHHHHHEEE---EEEEE
T ss_pred eeecccccccHHHHHHHHhcCCC---CcEEe
Confidence 88766653 45677777889999 99876
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.68 E-value=1.3e-08 Score=85.87 Aligned_cols=95 Identities=19% Similarity=0.223 Sum_probs=76.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-CC-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP-SG- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p-~~- 235 (345)
..+++.++ .....+|||||||+|+.+..+++.. +.+++.+|. +++++.++ ++.++.+|..+..| .+
T Consensus 68 a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~p 145 (215)
T d1jg1a_ 68 AIMLEIAN-LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAP 145 (215)
T ss_dssp HHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred HHHHHhhc-cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccCc
Confidence 45677777 8888999999999999999888765 356888887 77777665 89999999988555 34
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++...+.+.++. +.+.|+| ||++++.
T Consensus 146 fD~Iiv~~a~~~ip~~--------l~~qL~~---gGrLv~p 175 (215)
T d1jg1a_ 146 YDVIIVTAGAPKIPEP--------LIEQLKI---GGKLIIP 175 (215)
T ss_dssp EEEEEECSBBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred ceeEEeecccccCCHH--------HHHhcCC---CCEEEEE
Confidence 999999999877654 3467999 9999875
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.68 E-value=1.2e-08 Score=84.56 Aligned_cols=107 Identities=19% Similarity=0.188 Sum_probs=81.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCc------CC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFV------NV 232 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~------~~ 232 (345)
.++++.+. ......+||++||+|..+..+++++|+.+++++|. |++++.++ |+.++.++|.+ .+
T Consensus 13 ~evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~ 91 (192)
T d1m6ya2 13 REVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTL 91 (192)
T ss_dssp HHHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHT
T ss_pred HHHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHc
Confidence 45667666 56678999999999999999999999999999999 89988776 78999999865 22
Q ss_pred C-CC-CEEEecccc--ccCC-----hhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 233 P-SG-QAIFTKSVL--LNWS-----DEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 233 p-~~-D~i~~~~vl--h~~~-----d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+ .. |.|++-.-+ +.++ -....+.|..+.+.|+| ||+++|+ .+.
T Consensus 92 ~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~---gG~l~ii-~f~ 143 (192)
T d1m6ya2 92 GIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNP---GGRIVVI-SFH 143 (192)
T ss_dssp TCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEE---EEEEEEE-ESS
T ss_pred CCCCcceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCC---CCeeeee-ccc
Confidence 2 22 877764322 1111 11235789999999999 9999999 654
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.67 E-value=2e-08 Score=85.23 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=75.3
Q ss_pred HHHHhc--cCcccccceEEecCCccHHHHHHHHH------CCCCeEEEeeh-hhHhhhCC--------------CceEEe
Q 044482 169 KILEIY--KGFKELKKLVDVASCLGANMSLIVNT------YPQITGINFDL-PYVIKNAP--------------CVEHVE 225 (345)
Q Consensus 169 ~i~~~~--~~~~~~~~vlDiGgG~G~~~~~l~~~------~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~ 225 (345)
.+++.+ + ..+..+|||||||+|+++..+++. ++..+++.+|. +++++.++ ++.++.
T Consensus 69 ~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~ 147 (223)
T d1r18a_ 69 FALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE 147 (223)
T ss_dssp HHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence 456665 4 677889999999999999888775 35568999998 77776553 689999
Q ss_pred ccCCcCCC-CC--CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 226 GDMFVNVP-SG--QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 226 gd~~~~~p-~~--D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|..+..+ .+ |+|++...+.+.++. +.+.|+| ||++++.
T Consensus 148 ~d~~~~~~~~~~fD~Iiv~~a~~~~p~~--------l~~~Lk~---gG~lV~p 189 (223)
T d1r18a_ 148 GDGRKGYPPNAPYNAIHVGAAAPDTPTE--------LINQLAS---GGRLIVP 189 (223)
T ss_dssp SCGGGCCGGGCSEEEEEECSCBSSCCHH--------HHHTEEE---EEEEEEE
T ss_pred cccccccccccceeeEEEEeechhchHH--------HHHhcCC---CcEEEEE
Confidence 99988444 33 999999999887753 4578999 9999875
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.49 E-value=1.4e-07 Score=81.89 Aligned_cols=117 Identities=13% Similarity=0.059 Sum_probs=84.5
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCCCC--CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVPSG--QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p~~--D~i~~~~v 243 (345)
.....+|||+|||+|.++..++++ +..+++.+|+ |..++.++ +++++.+|+++-.+++ |.|++...
T Consensus 105 ~~~g~~VlD~~aG~G~~~l~~a~~-~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~p 183 (260)
T d2frna1 105 AKPDELVVDMFAGIGHLSLPIAVY-GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV 183 (260)
T ss_dssp CCTTCEEEETTCTTTTTHHHHHHH-TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred cCCccEEEECcceEcHHHHHHHHh-CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECCC
Confidence 346789999999999999999986 4568999999 77766554 6999999998844443 98887532
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHHHCC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAMAAG 323 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~~aG 323 (345)
- .....|.++.+.|+| ||.|.+. +.+..+. ......+.+.++.++.|
T Consensus 184 ~------~~~~~l~~a~~~l~~---gG~lh~~-~~~~~~~-----------------------~~~~~~e~~~~~~~~~g 230 (260)
T d2frna1 184 V------RTHEFIPKALSIAKD---GAIIHYH-NTVPEKL-----------------------MPREPFETFKRITKEYG 230 (260)
T ss_dssp S------SGGGGHHHHHHHEEE---EEEEEEE-EEEEGGG-----------------------TTTTTHHHHHHHHHHTT
T ss_pred C------chHHHHHHHHhhcCC---CCEEEEE-ecccccc-----------------------chhhHHHHHHHHHHHcC
Confidence 1 123568888899999 9988777 5432111 01123566778888999
Q ss_pred CCce
Q 044482 324 FGTI 327 (345)
Q Consensus 324 f~~~ 327 (345)
|++.
T Consensus 231 ~~v~ 234 (260)
T d2frna1 231 YDVE 234 (260)
T ss_dssp CEEE
T ss_pred CceE
Confidence 9764
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.2e-06 Score=75.26 Aligned_cols=69 Identities=9% Similarity=0.035 Sum_probs=52.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCc----CC---CCC--CEE
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFV----NV---PSG--QAI 238 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~----~~---p~~--D~i 238 (345)
...++||||||+|..+..|++++|+++++++|+ +..++.|+ |+.++..+..+ .+ .++ |+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 346899999999999999999999999999999 78887776 67777654433 11 122 999
Q ss_pred EeccccccC
Q 044482 239 FTKSVLLNW 247 (345)
Q Consensus 239 ~~~~vlh~~ 247 (345)
+++--.+.-
T Consensus 141 vsNPPY~~~ 149 (250)
T d2h00a1 141 MCNPPFFAN 149 (250)
T ss_dssp EECCCCC--
T ss_pred EecCccccc
Confidence 988777643
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.26 E-value=4.5e-07 Score=72.00 Aligned_cols=90 Identities=8% Similarity=-0.002 Sum_probs=64.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC--CCCC--CEEEeccc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN--VPSG--QAIFTKSV 243 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~--~p~~--D~i~~~~v 243 (345)
...+|||+|||+|.++.+.+.+... +++.+|. +.+++.++ +++++.+|.++. .+.. |+|++.--
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~-~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPP 92 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMS-AAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 92 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCC-EEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcc-eeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechh
Confidence 4579999999999999998887654 8999998 77766544 799999998772 3333 99987532
Q ss_pred cccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 244 LLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
. .......+|..+.. .|+| +|.+++-
T Consensus 93 y---~~~~~~~~l~~i~~~~~L~~---~g~iiiE 120 (152)
T d2esra1 93 Y---AKETIVATIEALAAKNLLSE---QVMVVCE 120 (152)
T ss_dssp S---HHHHHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred h---ccchHHHHHHHHHHCCCcCC---CeEEEEE
Confidence 1 12334456666543 5889 8876654
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.22 E-value=5.8e-07 Score=80.40 Aligned_cols=94 Identities=12% Similarity=0.073 Sum_probs=69.9
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC---CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP---SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p---~~-D~i~ 239 (345)
++..+|||+|||+|.++..++.... .+++.+|+ +..++.++ +++++.+|+++. ++ .. |+|+
T Consensus 144 ~~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi 222 (324)
T d2as0a2 144 QPGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGEKFDIVV 222 (324)
T ss_dssp CTTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhccCCCCchh
Confidence 4568999999999999999987753 48999999 77777665 689999999862 22 22 9999
Q ss_pred ecccc---ccCChh----HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVL---LNWSDE----QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vl---h~~~d~----~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+.--. +.-... .-.++++.+.+.|+| ||.|+..
T Consensus 223 ~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~p---GG~lv~~ 262 (324)
T d2as0a2 223 LDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKD---GGILVTC 262 (324)
T ss_dssp ECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEE---EEEEEEE
T ss_pred cCCccccCCHHHHHHHHHHHHHHHHHHHHHcCC---CcEEEEE
Confidence 84322 111111 124588999999999 9988887
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.17 E-value=8e-07 Score=74.62 Aligned_cols=96 Identities=10% Similarity=0.031 Sum_probs=69.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------SG-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~~-- 235 (345)
..++++||+||||+|..+..+++..+ +.+++.+|. |+.++.|+ +|+++.||..+.+| .+
T Consensus 54 ~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~ 133 (214)
T d2cl5a1 54 EYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTL 133 (214)
T ss_dssp HHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCE
T ss_pred hhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhccccccc
Confidence 34568999999999999999999875 579999998 77777665 79999999876332 12
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|++++- |+.+.......+.++.+.|+| || ++|+ |.+.
T Consensus 134 D~ifiD---~~~~~~~~~~~l~~~~~lLkp---GG-vIv~-Ddvl 170 (214)
T d2cl5a1 134 DMVFLD---HWKDRYLPDTLLLEKCGLLRK---GT-VLLA-DNVI 170 (214)
T ss_dssp EEEEEC---SCGGGHHHHHHHHHHTTCEEE---EE-EEEE-SCCC
T ss_pred ceeeec---ccccccccHHHHHHHhCccCC---Cc-EEEE-eCcC
Confidence 888775 222222233457777888999 77 5666 4443
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.14 E-value=1e-06 Score=72.84 Aligned_cols=64 Identities=14% Similarity=0.105 Sum_probs=50.4
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----CceEEeccCCcCCCCC-CEEEeccc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----CVEHVEGDMFVNVPSG-QAIFTKSV 243 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~~~p~~-D~i~~~~v 243 (345)
+. +.+|||+|||+|.++..++...+ .+++++|. +..++.++ +++++.+|+.+ ++.. |+|+++--
T Consensus 47 l~-Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N~~~~~~~~~D~~~-l~~~fD~Vi~NPP 116 (197)
T d1ne2a_ 47 IG-GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRNCGGVNFMVADVSE-ISGKYDTWIMNPP 116 (197)
T ss_dssp SB-TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHHCTTSEEEECCGGG-CCCCEEEEEECCC
T ss_pred CC-CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHccccccEEEEehhh-cCCcceEEEeCcc
Confidence 43 47999999999999988777654 37999998 77777776 79999999865 3433 99998733
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.07 E-value=2.3e-06 Score=73.10 Aligned_cols=87 Identities=11% Similarity=0.214 Sum_probs=69.1
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC-C
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG-Q 236 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~-D 236 (345)
...+++..+ .....+||+||||+|.++..|+++.. +++++|. +.+++.++ +++++.+|+++ +++.. +
T Consensus 18 i~kIv~~~~-~~~~d~VLEIGpG~G~LT~~L~~~~~--~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~~~~~~~ 94 (245)
T d1yuba_ 18 LNQIIKQLN-LKETDTVYEIGTGKGHLTTKLAKISK--QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQFPNKQR 94 (245)
T ss_dssp HHHHHHHCC-CCSSEEEEECSCCCSSCSHHHHHHSS--EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTTCCCSSE
T ss_pred HHHHHHhcC-CCCCCeEEEECCCccHHHHHHHhhcC--ceeEeeecccchhhhhhhhhhccchhhhhhhhhcccccccee
Confidence 456777777 77888999999999999999999854 6788887 66666554 79999999999 77754 6
Q ss_pred EEEeccccccCChhHHHHHH
Q 044482 237 AIFTKSVLLNWSDEQCLKIL 256 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL 256 (345)
..++++.=++.+.+-..+++
T Consensus 95 ~~vv~NLPY~Ist~il~~~l 114 (245)
T d1yuba_ 95 YKIVGNIPYHLSTQIIKKVV 114 (245)
T ss_dssp EEEEEECCSSSCHHHHHHHH
T ss_pred eeEeeeeehhhhHHHHHHHh
Confidence 77778888888887544444
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.03 E-value=1.1e-06 Score=77.89 Aligned_cols=94 Identities=12% Similarity=0.088 Sum_probs=71.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------------CceEEeccCCcCC---CCC-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------------CVEHVEGDMFVNV---PSG-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------------ri~~~~gd~~~~~---p~~-D~i 238 (345)
+++++||.||+|.|..+..+++..|..+++++|+ |.|++.++ |++++.+|..+-+ +.. |+|
T Consensus 76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (312)
T d1uira_ 76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV 155 (312)
T ss_dssp SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence 4568999999999999999998888889999999 88887654 8999999998732 234 999
Q ss_pred EeccccccCCh---h-H--HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSD---E-Q--CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d---~-~--~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-.. ..+.. . . ....++.|++.|+| ||.+++.
T Consensus 156 i~D~~-dp~~~~~~~~~L~t~eF~~~~~~~L~p---~Gvlv~~ 194 (312)
T d1uira_ 156 IIDLT-DPVGEDNPARLLYTVEFYRLVKAHLNP---GGVMGMQ 194 (312)
T ss_dssp EEECC-CCBSTTCGGGGGSSHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEeCC-CcccccchhhhhhhHHHHHHHHHhcCC---CceEEEe
Confidence 86431 11111 0 0 14689999999999 9977665
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=5.5e-06 Score=71.71 Aligned_cols=62 Identities=13% Similarity=0.172 Sum_probs=50.9
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--CC--CEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--SG--QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--~~--D~i~~~ 241 (345)
...+++|+|||+|..+..++ ++|+.+++++|. |..++.|+ ++.+..+|++++.+ .+ |+|+++
T Consensus 110 ~~~~vld~g~GsG~i~~~la-~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsN 186 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVA-KFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSN 186 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHH-HHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEEC
T ss_pred cccEEEEeeeeeehhhhhhh-hcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEc
Confidence 34689999999999999987 579999999999 77777665 67888999998655 23 999886
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.98 E-value=4.8e-06 Score=70.70 Aligned_cols=82 Identities=13% Similarity=0.186 Sum_probs=61.7
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCCC-
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPSG- 235 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~~- 235 (345)
....+++..+ .....+||+||||+|.++..|+++.. +++++|+ +.+++..+ +++++.+|+++ ++++.
T Consensus 9 i~~~iv~~~~-~~~~d~VlEIGpG~G~LT~~Ll~~~~--~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~~~~~~ 85 (235)
T d1qama_ 9 NIDKIMTNIR-LNEHDNIFEIGSGKGHFTLELVQRCN--FVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFKFPKNQ 85 (235)
T ss_dssp HHHHHHTTCC-CCTTCEEEEECCTTSHHHHHHHHHSS--EEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCCCCSSC
T ss_pred HHHHHHHhcC-CCCCCeEEEECCCchHHHHHHHhCcC--ceEEEeeccchHHHHHHHhhcccchhhhhhhhhhccccccc
Confidence 4567788777 77889999999999999999999864 5666666 55555433 89999999999 77754
Q ss_pred CEEEeccccccCChh
Q 044482 236 QAIFTKSVLLNWSDE 250 (345)
Q Consensus 236 D~i~~~~vlh~~~d~ 250 (345)
...+++|+=++.+-+
T Consensus 86 ~~~vv~NLPYnIss~ 100 (235)
T d1qama_ 86 SYKIFGNIPYNISTD 100 (235)
T ss_dssp CCEEEEECCGGGHHH
T ss_pred cceeeeeehhhhhHH
Confidence 555566665555444
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=97.97 E-value=2.9e-06 Score=75.47 Aligned_cols=92 Identities=12% Similarity=0.060 Sum_probs=68.0
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC---CC---CC-CEEEec
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN---VP---SG-QAIFTK 241 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~---~p---~~-D~i~~~ 241 (345)
...+|||++||+|.++.++++. ..+++.+|. +.+++.++ +++++.+|.++. ++ .. |+|++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~D 222 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLD 222 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEc
Confidence 4579999999999999998864 457999999 77777666 688999998762 22 22 999975
Q ss_pred cccccCChh-------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLNWSDE-------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d~-------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
--...-+.. .-.++++.+.+.|+| ||.|+..
T Consensus 223 pP~~~~~~~~~~~~~~~~~~l~~~a~~lLkp---GG~Lv~~ 260 (318)
T d1wxxa2 223 PPAFAKGKKDVERAYRAYKEVNLRAIKLLKE---GGILATA 260 (318)
T ss_dssp CCCSCCSTTSHHHHHHHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCccccchHHHHHHHHHHHHHHHHHHHHcCC---CCEEEEE
Confidence 322111111 124689999999999 9988877
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.97 E-value=2.5e-06 Score=71.72 Aligned_cols=95 Identities=12% Similarity=0.163 Sum_probs=70.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC-------CC--
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP-------SG-- 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p-------~~-- 235 (345)
..+.++||+||+|+|..+..+++..| +.+++.+|. |+..+.|+ +++++.||..+.++ .+
T Consensus 57 ~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~f 136 (219)
T d2avda1 57 LIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTF 136 (219)
T ss_dssp HTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCE
T ss_pred ccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCc
Confidence 44568999999999999999999976 689999998 66666555 79999999876221 22
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCC
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGL 280 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~ 280 (345)
|+|++.+ +.+.-...+..+.+.|+| ||.|++- +...
T Consensus 137 D~ifiD~-----dk~~y~~~~~~~~~lL~~---GGvii~D-n~l~ 172 (219)
T d2avda1 137 DVAVVDA-----DKENCSAYYERCLQLLRP---GGILAVL-RVLW 172 (219)
T ss_dssp EEEEECS-----CSTTHHHHHHHHHHHEEE---EEEEEEE-CCSG
T ss_pred cEEEEeC-----CHHHHHHHHHHHHHHhcC---CcEEEEe-CCcc
Confidence 8887742 233346778899999999 7755554 4433
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=97.92 E-value=1.1e-05 Score=66.79 Aligned_cols=65 Identities=9% Similarity=-0.088 Sum_probs=49.2
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCCCCEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPSGQAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~~D~i~~~~vlh 245 (345)
+.+|||+|||+|.++..++.+. ..+++++|. +.+++.++ +.+++.+|..+...+-|+|+++--..
T Consensus 47 g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~~~fD~Vi~nPP~~ 120 (201)
T d1wy7a1 47 GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFNSRVDIVIMNPPFG 120 (201)
T ss_dssp TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCCCCCSEEEECCCCS
T ss_pred CCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhCCcCcEEEEcCccc
Confidence 4789999999999999887654 358999999 77776555 67888888765322349999875543
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=97.89 E-value=3.6e-06 Score=73.77 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=70.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCCC---CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNVP---SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~p---~~-D~i~ 239 (345)
+++++||-||||.|..+..+++..|..+++++|+ |.|++.++ |++++.+|.++-+. .. |+|+
T Consensus 88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 167 (295)
T d1inla_ 88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 167 (295)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence 4568999999999999999998777788999999 88888765 89999999987322 33 9998
Q ss_pred eccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-..-..-.... -...++.|++.|+| ||.+++.
T Consensus 168 ~D~~dp~~~~~~~L~t~efy~~~~~~L~~---~Gi~v~q 203 (295)
T d1inla_ 168 IDSTDPTAGQGGHLFTEEFYQACYDALKE---DGVFSAE 203 (295)
T ss_dssp EEC----------CCSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCCCCcCchhhhccHHHHHHHHhhcCC---CcEEEEe
Confidence 753221101110 14689999999999 8877665
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=97.85 E-value=4.6e-06 Score=72.58 Aligned_cols=93 Identities=17% Similarity=0.169 Sum_probs=68.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------------CceEEeccCCcCCC--CC
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------------CVEHVEGDMFVNVP--SG 235 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------------ri~~~~gd~~~~~p--~~ 235 (345)
.++++||.||||.|..+..+++ +|..+++++|+ |.|++.++ |++++.+|..+-+. ..
T Consensus 71 ~~p~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~ 149 (276)
T d1mjfa_ 71 PKPKRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG 149 (276)
T ss_dssp SCCCEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred CCCceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCC
Confidence 4668999999999999999986 56678999999 88887553 78999999876322 34
Q ss_pred -CEEEeccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++-..- ...... -...++.|++.|+| ||.+++.
T Consensus 150 yDvIi~D~~~-~~~~~~~L~t~eF~~~~~~~L~~---~Gv~v~q 189 (276)
T d1mjfa_ 150 FDVIIADSTD-PVGPAKVLFSEEFYRYVYDALNN---PGIYVTQ 189 (276)
T ss_dssp EEEEEEECCC-CC-----TTSHHHHHHHHHHEEE---EEEEEEE
T ss_pred CCEEEEeCCC-CCCCcccccCHHHHHhhHhhcCC---CceEEEe
Confidence 999864332 222221 14689999999999 9976665
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.82 E-value=2.7e-05 Score=64.82 Aligned_cols=105 Identities=10% Similarity=0.121 Sum_probs=74.7
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCC-CeEEEeeh-hhHhhhCCCceEEeccCCcCCC-CC-CEEEecc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQ-ITGINFDL-PYVIKNAPCVEHVEGDMFVNVP-SG-QAIFTKS 242 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~-~~~~~~Dl-p~~i~~a~ri~~~~gd~~~~~p-~~-D~i~~~~ 242 (345)
+.-+++... .....+|+|.|||+|.++..+.++++. ..++++|+ +..+..+++..+..+|++...+ .. |+++.+.
T Consensus 8 ~~~m~~l~~-~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~~~~~~~~~~~~~~~~~~fd~ii~np 86 (223)
T d2ih2a1 8 VDFMVSLAE-APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPPWAEGILADFLLWEPGEAFDLILGNP 86 (223)
T ss_dssp HHHHHHHCC-CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCTTEEEEESCGGGCCCSSCEEEEEECC
T ss_pred HHHHHHhcC-CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcccceeeeeehhccccccccceecccC
Confidence 344555555 556689999999999999999988765 56899998 5556555567788899887443 33 8888775
Q ss_pred ccccC--Chh-------------------------HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 243 VLLNW--SDE-------------------------QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 243 vlh~~--~d~-------------------------~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-.... ... -...++.++.+.|+| ||++.++
T Consensus 87 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~---~G~~~~I 143 (223)
T d2ih2a1 87 PYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKP---GGVLVFV 143 (223)
T ss_dssp CCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhccc---CCceEEE
Confidence 43211 000 123567888899999 9998777
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.82 E-value=7.9e-06 Score=70.91 Aligned_cols=94 Identities=15% Similarity=0.078 Sum_probs=71.1
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc--CCC-CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV--NVP-SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~--~~p-~~-D~i~ 239 (345)
.++++||-||+|.|..+..+++..|..+++++|+ |.|++.++ |++++.+|..+ ... +. |+|+
T Consensus 74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi 153 (274)
T d1iy9a_ 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (274)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence 4568999999999999999998777789999999 88888765 89999999887 222 33 9998
Q ss_pred eccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-..- .+... --...++.|++.|+| ||.++..
T Consensus 154 ~D~~~-p~~~~~~L~t~eFy~~~~~~L~~---~Gv~v~q 188 (274)
T d1iy9a_ 154 VDSTE-PVGPAVNLFTKGFYAGIAKALKE---DGIFVAQ 188 (274)
T ss_dssp ESCSS-CCSCCCCCSTTHHHHHHHHHEEE---EEEEEEE
T ss_pred EcCCC-CCCcchhhccHHHHHHHHhhcCC---CceEEEe
Confidence 65321 11110 013679999999999 8876665
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=7e-06 Score=71.60 Aligned_cols=94 Identities=15% Similarity=0.076 Sum_probs=70.4
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcC---CCCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVN---VPSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~---~p~~-D~i~ 239 (345)
.++++||-||+|.|..+..+++..|..+++++|+ |.|++.++ |++++.+|..+- .++. |+|+
T Consensus 77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi 156 (285)
T d2o07a1 77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 156 (285)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence 4668999999999999999997777789999999 89988775 899999998872 2234 9998
Q ss_pred eccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-. .+...... -...++.|++.|+| ||.+++.
T Consensus 157 ~D~-~~p~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 191 (285)
T d2o07a1 157 TDS-SDPMGPAESLFKESYYQLMKTALKE---DGVLCCQ 191 (285)
T ss_dssp EEC-C-----------CHHHHHHHHHEEE---EEEEEEE
T ss_pred EcC-CCCCCcccccccHHHHHHHHHhcCC---CCeEEEe
Confidence 752 22222111 12579999999999 8877665
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=97.81 E-value=7.7e-06 Score=72.55 Aligned_cols=94 Identities=14% Similarity=0.066 Sum_probs=67.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC----C--C-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP----S--G-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p----~--~-D~ 237 (345)
.....+|||+.||+|.++...+... ..+++.+|+ +..++.++ +++++.+|+++.++ . . |+
T Consensus 142 ~~~g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~ 220 (317)
T d2b78a2 142 SAAGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDI 220 (317)
T ss_dssp TTBTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEE
T ss_pred hhCCCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCE
Confidence 4466899999999999998876543 346899998 66666444 68899999987322 2 2 99
Q ss_pred EEec--------cccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTK--------SVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~--------~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++- .-++... ..-.++++.+.+.|+| ||.|++.
T Consensus 221 Ii~DPP~f~~~~~~~~~~~-~~~~~L~~~a~~ll~p---gG~l~~~ 262 (317)
T d2b78a2 221 IIIDPPSFARNKKEVFSVS-KDYHKLIRQGLEILSE---NGLIIAS 262 (317)
T ss_dssp EEECCCCC-----CCCCHH-HHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred EEEcChhhccchhHHHHHH-HHHHHHHHHHHHHcCC---CCEEEEE
Confidence 9873 1111111 1235799999999999 9988887
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.73 E-value=1.2e-05 Score=70.37 Aligned_cols=94 Identities=15% Similarity=0.086 Sum_probs=71.7
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCc---CCCC-C-CEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFV---NVPS-G-QAI 238 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~---~~p~-~-D~i 238 (345)
++.++||=||+|.|..+..+++..|-.+++++|+ |.|++.++ |++++.+|.++ ..++ . |+|
T Consensus 79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI 158 (290)
T d1xj5a_ 79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV 158 (290)
T ss_dssp SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence 4668999999999999999998777678999999 88888775 89999999876 2334 3 999
Q ss_pred EeccccccCChhH---HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 239 FTKSVLLNWSDEQ---CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 239 ~~~~vlh~~~d~~---~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-.. .-..... -...++.|++.|+| ||.+++.
T Consensus 159 i~D~~-dp~~~~~~L~t~eF~~~~~~~L~~---~Gi~v~q 194 (290)
T d1xj5a_ 159 IVDSS-DPIGPAKELFEKPFFQSVARALRP---GGVVCTQ 194 (290)
T ss_dssp EECCC-CTTSGGGGGGSHHHHHHHHHHEEE---EEEEEEE
T ss_pred EEcCC-CCCCcchhhCCHHHHHHHHHhcCC---CcEEEEe
Confidence 86422 1111110 14689999999999 8877776
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.69 E-value=1.1e-05 Score=70.91 Aligned_cols=94 Identities=16% Similarity=0.091 Sum_probs=68.5
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------------CceEEeccCCcCC---CCC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------------CVEHVEGDMFVNV---PSG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------------ri~~~~gd~~~~~---p~~-D~i~ 239 (345)
.++++||-||+|.|..+..+++..|-.+++++|+ |.|++.++ |++++.+|..+-+ +.. |+|+
T Consensus 105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII 184 (312)
T d2b2ca1 105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII 184 (312)
T ss_dssp SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence 4568999999999999999998777678999999 88888665 8999999998722 233 9998
Q ss_pred eccccccCChh---HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDE---QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~---~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+-..- ..... -....++.|++.|+| ||.++..
T Consensus 185 ~D~~d-p~~~~~~L~t~eFy~~~~~~L~~---~Gi~v~q 219 (312)
T d2b2ca1 185 TDSSD-PVGPAESLFGQSYYELLRDALKE---DGILSSQ 219 (312)
T ss_dssp ECCC--------------HHHHHHHHEEE---EEEEEEE
T ss_pred EcCCC-CCCcchhhhhHHHHHHHHhhcCC---CcEEEEe
Confidence 74321 11111 124678999999999 8876666
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.68 E-value=1.7e-05 Score=69.61 Aligned_cols=94 Identities=14% Similarity=0.088 Sum_probs=67.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCcCCC------CC-CE
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFVNVP------SG-QA 237 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~~~p------~~-D~ 237 (345)
.....+|||+.||+|.++..++.. ..+++.+|. +..++.|+ +++|+.+|+++.+. .. |+
T Consensus 130 ~~~~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~ 207 (309)
T d2igta1 130 ADRPLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDI 207 (309)
T ss_dssp SSSCCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSE
T ss_pred ccCCCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCE
Confidence 445679999999999999998875 458999999 67777665 58999999987321 22 99
Q ss_pred EEec---cccc----cCC-hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTK---SVLL----NWS-DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~---~vlh----~~~-d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|++. ..-. .|. .+....+++.+.+.|+| ||.+++.
T Consensus 208 IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~---~g~~ll~ 250 (309)
T d2igta1 208 ILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSP---KALGLVL 250 (309)
T ss_dssp EEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCT---TCCEEEE
T ss_pred EEECCCcccccccchhHHHHHHHHHHHHHHHHhcCC---CCCEEEE
Confidence 9973 1110 122 12334677888999999 8876666
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.64 E-value=2.9e-05 Score=65.35 Aligned_cols=91 Identities=13% Similarity=0.155 Sum_probs=69.6
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC----------CceEEeccCCcCCC--------C-C
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP----------CVEHVEGDMFVNVP--------S-G 235 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~p--------~-~ 235 (345)
..++++||+||+++|..+..+++..| +.+++.+|. |+..+.|+ +|+++.||+.+.++ . .
T Consensus 57 ~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~ 136 (227)
T d1susa1 57 LINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGS 136 (227)
T ss_dssp HHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTC
T ss_pred hcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCc
Confidence 44668999999999999999999987 578999998 66655554 79999999976322 1 2
Q ss_pred -CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 -QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 -D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++-. +.+.....+..+.+.|+| ||.|++-
T Consensus 137 fD~iFiDa-----~k~~y~~~~e~~~~ll~~---gGiii~D 169 (227)
T d1susa1 137 YDFIFVDA-----DKDNYLNYHKRLIDLVKV---GGVIGYD 169 (227)
T ss_dssp BSEEEECS-----CSTTHHHHHHHHHHHBCT---TCCEEEE
T ss_pred eeEEEecc-----chhhhHHHHHHHHhhcCC---CcEEEEc
Confidence 9998752 223456788999999999 8754444
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=97.63 E-value=2.8e-05 Score=63.19 Aligned_cols=89 Identities=10% Similarity=0.023 Sum_probs=62.1
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcC--CC-CC-CEEEeccccc
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVN--VP-SG-QAIFTKSVLL 245 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~--~p-~~-D~i~~~~vlh 245 (345)
..+|||++||+|.++.+.+.+... +++.+|. +..++.++ +++++.+|+++. .. .. |+|++.--..
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~-~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAA-GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred hhhhhhhhccccceeeeEEecCcc-eeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 368999999999999998887654 7899998 66665444 788899998872 22 23 9999864433
Q ss_pred cCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 246 NWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
. ....+++..+.+ .|++ +|.+++-
T Consensus 123 ~---~~~~~~l~~l~~~~~L~~---~~iIiiE 148 (183)
T d2fpoa1 123 R---GLLEETINLLEDNGWLAD---EALIYVE 148 (183)
T ss_dssp T---TTHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred c---chHHHHHHHHHHCCCCCC---CeEEEEE
Confidence 2 222345555544 4888 7755554
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=97.61 E-value=5.4e-05 Score=67.21 Aligned_cols=95 Identities=13% Similarity=0.093 Sum_probs=69.3
Q ss_pred ccccceEEecCCccHHHHHHHHH-----CCCCeEEEeeh-hhHhhhCC--------CceEEeccCCcCCCC-C-CEEEec
Q 044482 178 KELKKLVDVASCLGANMSLIVNT-----YPQITGINFDL-PYVIKNAP--------CVEHVEGDMFVNVPS-G-QAIFTK 241 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~-----~p~~~~~~~Dl-p~~i~~a~--------ri~~~~gd~~~~~p~-~-D~i~~~ 241 (345)
....+|+|.|||+|.++..+.++ .++.+++++|+ +.++..|+ ...+..+|.+...+. . |+|+++
T Consensus 116 ~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~fD~vi~N 195 (328)
T d2f8la1 116 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISD 195 (328)
T ss_dssp CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCCCCCCEEEEEEE
T ss_pred CCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhccccccccccccccccccC
Confidence 45578999999999999998764 34567899998 76776665 677888888875553 3 999988
Q ss_pred ccccc-CChhH---------------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 SVLLN-WSDEQ---------------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~-~~d~~---------------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
--... +.++. -..++.++.+.|+| ||++.++
T Consensus 196 PPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~~I 242 (328)
T d2f8la1 196 LPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKP---GGYLFFL 242 (328)
T ss_dssp CCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEE---EEEEEEE
T ss_pred CCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCC---CCceEEE
Confidence 54421 22211 12468999999999 9988776
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=97.52 E-value=1.9e-05 Score=63.49 Aligned_cols=91 Identities=11% Similarity=0.064 Sum_probs=56.7
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcC---CC-CC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVN---VP-SG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~---~p-~~-D~i~~ 240 (345)
.....+|||+|||+|.++.+.+.+. .+++.+|. |.+++.++ ++....+|.+.+ .+ .. |+|++
T Consensus 39 ~~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~If~ 116 (171)
T d1ws6a1 39 YPRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFM 116 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEE
T ss_pred ccCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCCccceeEE
Confidence 3456799999999999999888764 57889999 77777665 344444444321 12 23 99988
Q ss_pred ccccccCChhH-HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 241 KSVLLNWSDEQ-CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 241 ~~vlh~~~d~~-~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.=-.+ .+..+ ...++. ...|+| ||.+++.
T Consensus 117 DPPY~-~~~~~~l~~l~~--~~ll~~---~g~ivie 146 (171)
T d1ws6a1 117 APPYA-MDLAALFGELLA--SGLVEA---GGLYVLQ 146 (171)
T ss_dssp CCCTT-SCTTHHHHHHHH--HTCEEE---EEEEEEE
T ss_pred ccccc-cCHHHHHHHHHH--cCCcCC---CeEEEEE
Confidence 53222 22222 222332 246888 8866554
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0001 Score=60.91 Aligned_cols=87 Identities=13% Similarity=0.078 Sum_probs=68.0
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-h-------hHhhhCC--CceEEeccCCcCCCC--CCEEEeccccccC
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-P-------YVIKNAP--CVEHVEGDMFVNVPS--GQAIFTKSVLLNW 247 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p-------~~i~~a~--ri~~~~gd~~~~~p~--~D~i~~~~vlh~~ 247 (345)
..+++|||+|.|.-+.-++-.+|+.+++++|. . +++.... +++++.+...+..+. .|+|+++.+-
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~~--- 142 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAFA--- 142 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCSS---
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhhc---
Confidence 46899999999999999999999999999997 2 2222222 788888888763333 3999887664
Q ss_pred ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 248 SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 248 ~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+ ...++.-+...+++ +|+++..
T Consensus 143 -~--~~~ll~~~~~~l~~---~g~~~~~ 164 (207)
T d1jsxa_ 143 -S--LNDMVSWCHHLPGE---QGRFYAL 164 (207)
T ss_dssp -S--HHHHHHHHTTSEEE---EEEEEEE
T ss_pred -C--HHHHHHHHHHhcCC---CcEEEEE
Confidence 2 24688888899999 9998888
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.30 E-value=0.00041 Score=58.29 Aligned_cols=131 Identities=12% Similarity=0.062 Sum_probs=88.9
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hh---Hhh----hCC--CceEEeccCCc-C----CCCC-CEEEe
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PY---VIK----NAP--CVEHVEGDMFV-N----VPSG-QAIFT 240 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~---~i~----~a~--ri~~~~gd~~~-~----~p~~-D~i~~ 240 (345)
+....+++|||+|.|.-+.-++=.+|+.+++.+|. .. .++ ... ++.++.+.+.+ . .... |+|++
T Consensus 68 ~~~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~s 147 (239)
T d1xdza_ 68 FNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTA 147 (239)
T ss_dssp GGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEE
T ss_pred ccCCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEE
Confidence 55667999999999999999999999999999997 21 122 222 67777765543 1 1123 99998
Q ss_pred ccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCCCchhhhhhhccchhhhhhcCCCccCCHHHHHHHHH
Q 044482 241 KSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPEFSSINRNILTLDIVMYDLFPQAKGRTAGEFKALAM 320 (345)
Q Consensus 241 ~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~rt~~e~~~ll~ 320 (345)
+.+- + ...++.-+...+++ ||+++.. .. . . . .-..++.++.++
T Consensus 148 RAva----~--l~~ll~~~~~~l~~---~g~~i~~-KG-----~-~-~--------------------~~El~~a~~~~~ 190 (239)
T d1xdza_ 148 RAVA----R--LSVLSELCLPLVKK---NGLFVAL-KA-----A-S-A--------------------EEELNAGKKAIT 190 (239)
T ss_dssp ECCS----C--HHHHHHHHGGGEEE---EEEEEEE-EC-----C---C--------------------HHHHHHHHHHHH
T ss_pred hhhh----C--HHHHHHHHhhhccc---CCEEEEE-CC-----C-C-h--------------------HHHHHHHHHHHH
Confidence 8664 2 24789999999999 9998888 21 0 0 0 001344566778
Q ss_pred HCCCCceEEEec--C---CceEEEEEEcC
Q 044482 321 AAGFGTIKVICR--S---YCYWVIEFYKP 344 (345)
Q Consensus 321 ~aGf~~~~~~~~--~---~~~~vi~~~k~ 344 (345)
..|++..++... + +...++...|.
T Consensus 191 ~~~~~~~~v~~~~lp~~~~~r~lv~i~K~ 219 (239)
T d1xdza_ 191 TLGGELENIHSFKLPIEESDRNIMVIRKI 219 (239)
T ss_dssp HTTEEEEEEEEEECTTTCCEEEEEEEEEC
T ss_pred HcCCEEEEEEEEeCCCCCCCEEEEEEEEC
Confidence 889887666443 3 33567777654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.30 E-value=6.3e-05 Score=63.94 Aligned_cols=75 Identities=44% Similarity=0.832 Sum_probs=52.1
Q ss_pred CcccCCCchhhhhhcCHHHHHHHHHHHHHhhhh---------c-cccccceeeccCCCchhHHHHHHHcCCCcccCCCcc
Q 044482 1 MRAHNGLHLFDYASKDARLQNLFNQSMHNHTAI---------G-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLP 70 (345)
Q Consensus 1 ~~~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~---------~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~ 70 (345)
|+.+||.++|+|+.+||+..+.|..+|.-.++. + +.++-.+||.+||.|.-+.+|+++.+-++++.+|.|
T Consensus 35 f~~~~G~~~~e~l~~~p~~~~~F~~aM~~~s~~~~~~l~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp 114 (244)
T d1fp1d2 35 FKNVHGVTKYEFMGKDKKMNQIFNKSMVDVCATEMKRMLEIYTGFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLP 114 (244)
T ss_dssp -----------CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH
T ss_pred hHHhcCCCHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecch
Confidence 456789999999999999999999988643332 2 233566789999999999999999999999999988
Q ss_pred ccccc
Q 044482 71 HVIEN 75 (345)
Q Consensus 71 ~~l~r 75 (345)
..++.
T Consensus 115 ~vi~~ 119 (244)
T d1fp1d2 115 QVIEN 119 (244)
T ss_dssp HHHTT
T ss_pred hhhhc
Confidence 87654
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=97.28 E-value=0.0041 Score=55.11 Aligned_cols=145 Identities=17% Similarity=0.182 Sum_probs=92.8
Q ss_pred ccccceEEecCCccHHH-------H-HHHHH--------CCCCeEEEeehhh-----HhhhCC---------CceEEecc
Q 044482 178 KELKKLVDVASCLGANM-------S-LIVNT--------YPQITGINFDLPY-----VIKNAP---------CVEHVEGD 227 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~-------~-~l~~~--------~p~~~~~~~Dlp~-----~i~~a~---------ri~~~~gd 227 (345)
++.-+|.|+||.+|..+ + .+.++ -|+.++..=|+|. +..... -+.-++|.
T Consensus 50 ~~~~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGS 129 (359)
T d1m6ex_ 50 TTRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGS 129 (359)
T ss_dssp SSEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESC
T ss_pred CCceEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCc
Confidence 34467999999999876 2 33322 3567889999974 222211 25668899
Q ss_pred CCc-CCCCC--CEEEeccccccCCh-------------------h------------HHHHHHHHHHhhCCCCCCCcEEE
Q 044482 228 MFV-NVPSG--QAIFTKSVLLNWSD-------------------E------------QCLKILKNCYDALPKSRKHGRTQ 273 (345)
Q Consensus 228 ~~~-~~p~~--D~i~~~~vlh~~~d-------------------~------------~~~~iL~~~~~aL~p~~~gG~ll 273 (345)
|+. -+|++ +++++++.||.++. + +...+|+.=++-|.| ||+++
T Consensus 130 FY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~---GG~mv 206 (359)
T d1m6ex_ 130 FYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVP---GGRMV 206 (359)
T ss_dssp SSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCT---TCEEE
T ss_pred hhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CcEEE
Confidence 999 78865 99999999998752 1 344688888889999 99998
Q ss_pred EEeccCCCCCCCCchhhhhhhccchh-----hhhhcCC-------------CccCCHHHHHHHHHHCC-CCceEE
Q 044482 274 LRSKRGLPESPEFSSINRNILTLDIV-----MYDLFPQ-------------AKGRTAGEFKALAMAAG-FGTIKV 329 (345)
Q Consensus 274 i~~d~~~~~~~~~~~~~~~~~~~d~~-----~~~~~~~-------------~~~rt~~e~~~ll~~aG-f~~~~~ 329 (345)
+. -.-.++..... ......+++. -|+.. | -..+|.+|+++.+++.| |++.++
T Consensus 207 l~-~~gr~~~~~~~--~~~~~~~~~l~~al~dmv~e-GlI~eek~dsfn~P~Y~ps~eEv~~~ie~~gsF~i~~~ 277 (359)
T d1m6ex_ 207 LT-ILGRRSEDRAS--TECCLIWQLLAMALNQMVSE-GLIEEEKMDKFNIPQYTPSPTEVEAEILKEGSFLIDHI 277 (359)
T ss_dssp EE-EEECSSSSSSS--TTTSTTTHHHHHHHHHHHHT-TCSCCSTTGGGCCCCBCCCSHHHHHHHHHTTTBCCEEE
T ss_pred EE-EeccCCCCCCC--CccchHHHHHHHHHHHHHHc-CCCCHHHHHhccCccccCCHHHHHHHhccCCCeeeeee
Confidence 87 55444321111 0111112221 11110 1 12479999999999876 666555
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=97.25 E-value=0.00011 Score=59.54 Aligned_cols=90 Identities=11% Similarity=-0.005 Sum_probs=62.8
Q ss_pred ccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC----------CceEEeccCCcCC-----C-CC-CEEE
Q 044482 178 KELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP----------CVEHVEGDMFVNV-----P-SG-QAIF 239 (345)
Q Consensus 178 ~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~----------ri~~~~gd~~~~~-----p-~~-D~i~ 239 (345)
....+|||+.||+|.++.+.+.+... +++.+|. +..++.++ +++++.+|+++.+ . .. |+|+
T Consensus 40 ~~~~~vLDlfaGsG~~g~ea~srGa~-~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf 118 (182)
T d2fhpa1 40 FDGGMALDLYSGSGGLAIEAVSRGMD-KSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVL 118 (182)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred cCCCEEEEcccccccccceeeecchh-HHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEE
Confidence 34579999999999999999987643 7888998 66665544 7899999987621 1 22 9998
Q ss_pred eccccccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 240 TKSVLLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
+-=-.+ ......+|..+.+ .|+| +|.| |+
T Consensus 119 lDPPY~---~~~~~~~l~~i~~~~~L~~---~giI-i~ 149 (182)
T d2fhpa1 119 LDPPYA---KQEIVSQLEKMLERQLLTN---EAVI-VC 149 (182)
T ss_dssp ECCCGG---GCCHHHHHHHHHHTTCEEE---EEEE-EE
T ss_pred echhhh---hhHHHHHHHHHHHCCCCCC---CEEE-EE
Confidence 853321 1223466777754 4888 7755 45
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.19 E-value=8.1e-05 Score=63.24 Aligned_cols=74 Identities=31% Similarity=0.626 Sum_probs=59.3
Q ss_pred cccCCCchhhhhhcCHHHHHHHHHHHHHhhhh----------ccccccceeeccCCCchhHHHHHHHcCCCcccCCCccc
Q 044482 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI----------GFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH 71 (345)
Q Consensus 2 ~~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~----------~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~ 71 (345)
+.++|+++|+|+.++|+..+.|..+|+..+.. .+.++-.++|.+||.|..+.+|+++.+-++++.+|.|.
T Consensus 35 ~~a~G~~~~e~l~~~pe~~~~F~~aM~~~s~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 114 (244)
T d1fp2a2 35 GVTLGSGFWDFLDKNPEYNTSFNDAMASDSKLINLALRDCDFVFDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ 114 (244)
T ss_dssp HHHHSSCHHHHHHHCHHHHHHHHHHHHHTHHHHHHHHHTCHHHHTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH
T ss_pred HHhhCCCHHHHHHhCHHHHHHHHHHhhhhhhhhhhhHhhhcccccCceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH
Confidence 34679999999999999999999988544322 11124558899999999999999999998999999887
Q ss_pred cccc
Q 044482 72 VIEN 75 (345)
Q Consensus 72 ~l~r 75 (345)
.++.
T Consensus 115 vi~~ 118 (244)
T d1fp2a2 115 VVEN 118 (244)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 7654
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.08 E-value=0.0021 Score=53.76 Aligned_cols=103 Identities=12% Similarity=0.009 Sum_probs=63.9
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehh----hH-hhhCC----CceEEeccCCcCCC-C-CC
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLP----YV-IKNAP----CVEHVEGDMFVNVP-S-GQ 236 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp----~~-i~~a~----ri~~~~gd~~~~~p-~-~D 236 (345)
..+.+.+- +....+|||+|||.|.++..++++.+...+.++|+- +. +.... -+++..++-....+ . .|
T Consensus 56 ~~~~~~~~-~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e~P~~~~~~~~ni~~~~~~~dv~~l~~~~~D 134 (257)
T d2p41a1 56 RWFVERNL-VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHEEPIPMSTYGWNLVRLQSGVDVFFIPPERCD 134 (257)
T ss_dssp HHHHHTTS-SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCCCCCCSTTGGGEEEECSCCTTTSCCCCCS
T ss_pred HHHHHhcC-ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCccccCCccccccccccccchhhhhHHhcCCCcCC
Confidence 34555554 667779999999999999999988766666666651 10 11111 24555554333333 2 39
Q ss_pred EEEeccccccCChh-----HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 237 AIFTKSVLLNWSDE-----QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 237 ~i~~~~vlh~~~d~-----~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
+|+|--.-+ -++. ...++|.-+.+.|+| ||.+++-
T Consensus 135 ~vlcDm~es-s~~~~vd~~Rtl~vLela~~wLk~---gg~FvvK 174 (257)
T d2p41a1 135 TLLCDIGES-SPNPTVEAGRTLRVLNLVENWLSN---NTQFCVK 174 (257)
T ss_dssp EEEECCCCC-CSSHHHHHHHHHHHHHHHHHHCCT---TCEEEEE
T ss_pred EEEeeCCCC-CCCchhhhhhHHHHHHHHHHHccc---CCEEEEE
Confidence 998864322 1111 234677778899999 9976554
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0016 Score=55.88 Aligned_cols=90 Identities=9% Similarity=0.191 Sum_probs=58.9
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC----------CceEEeccCCc-CCCC
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP----------CVEHVEGDMFV-NVPS 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~----------ri~~~~gd~~~-~~p~ 234 (345)
....+++... .....+||+||+|.|.++..|+++.+.+.++-.| +..++..+ +++++.+|+++ ++|.
T Consensus 9 i~~kIv~~~~-~~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D-~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~ 86 (278)
T d1zq9a1 9 IINSIIDKAA-LRPTDVVLEVGPGTGNMTVKLLEKAKKVVACELD-PRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF 86 (278)
T ss_dssp HHHHHHHHTC-CCTTCEEEEECCTTSTTHHHHHHHSSEEEEEESC-HHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC
T ss_pred HHHHHHHHhC-CCCCCEEEEECCCchHHHHHHHhcCCcEEEEEEc-cchhHHHHHHHhhhccccchhhhHHHHhhhhhhh
Confidence 3456777766 6677899999999999999999997654445555 33322211 79999999998 6665
Q ss_pred CCEEEeccccccCChhHHHHHHHHHHhh
Q 044482 235 GQAIFTKSVLLNWSDEQCLKILKNCYDA 262 (345)
Q Consensus 235 ~D~i~~~~vlh~~~d~~~~~iL~~~~~a 262 (345)
...++ .|. |-.-...|+.++...
T Consensus 87 ~~~vV-~NL----PY~Iss~il~~~~~~ 109 (278)
T d1zq9a1 87 FDTCV-ANL----PYQISSPFVFKLLLH 109 (278)
T ss_dssp CSEEE-EEC----CGGGHHHHHHHHHHC
T ss_pred hhhhh-cch----HHHHHHHHHHHHHhh
Confidence 44433 333 333334556555443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.02 E-value=0.00028 Score=56.90 Aligned_cols=103 Identities=17% Similarity=0.160 Sum_probs=74.3
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----CceEEeccCCc-C-----CC-
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----CVEHVEGDMFV-N-----VP- 233 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----ri~~~~gd~~~-~-----~p- 233 (345)
..++++.+. ......+||..+|.|..+..+++++ .+++++|. |.+++.++ |+.++.++|-+ . ..
T Consensus 7 l~Evl~~l~-~~~g~~~vD~T~G~GGhs~~iL~~~--~~viaiD~D~~ai~~a~~~~~~~~~~~~~~f~~~~~~l~~~~~ 83 (182)
T d1wg8a2 7 YQEALDLLA-VRPGGVYVDATLGGAGHARGILERG--GRVIGLDQDPEAVARAKGLHLPGLTVVQGNFRHLKRHLAALGV 83 (182)
T ss_dssp HHHHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHTCCTTEEEEESCGGGHHHHHHHTTC
T ss_pred HHHHHHhcC-CCCCCEEEEeCCCCcHHHHHHhccc--CcEEEEhhhhhHHHHHhhccccceeEeehHHHHHHHHHHHcCC
Confidence 345666665 5667899999999999999999974 58999999 88887765 88999988765 1 12
Q ss_pred CC-CEEEeccc-----cccCCh--hHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 234 SG-QAIFTKSV-----LLNWSD--EQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 234 ~~-D~i~~~~v-----lh~~~d--~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.. |.|++--- |.+-++ ......|....+.|+| ||+++|+
T Consensus 84 ~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~---gg~~~ii 130 (182)
T d1wg8a2 84 ERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAP---GGRLVVI 130 (182)
T ss_dssp SCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred CccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCC---CCeEEEE
Confidence 22 77776321 111111 1234578889999999 9999998
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=97.01 E-value=0.0015 Score=56.67 Aligned_cols=93 Identities=16% Similarity=0.127 Sum_probs=70.5
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------CceEEeccCCcCCC----------CC-
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------CVEHVEGDMFVNVP----------SG- 235 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------ri~~~~gd~~~~~p----------~~- 235 (345)
+...||.+|||-=+-...+ ...++++++-+|+|+|++..+ +..++..|+.++++ +.
T Consensus 89 g~~qvV~LGaGlDTr~~Rl-~~~~~~~~~EvD~p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~p 167 (297)
T d2uyoa1 89 GIRQFVILASGLDSRAYRL-DWPTGTTVYEIDQPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSAR 167 (297)
T ss_dssp TCCEEEEETCTTCCHHHHS-CCCTTCEEEEEECHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSC
T ss_pred CCCeEEEeCcccCChhhhc-CCCcCceEEEcCChHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCC
Confidence 4567888999998877665 346788999999999976322 56777777765322 11
Q ss_pred CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
-++++-.++++++.+++..+|+.+.+...| |+.|++-
T Consensus 168 tl~i~EGvl~YL~~~~~~~ll~~i~~~~~~---GS~l~~d 204 (297)
T d2uyoa1 168 TAWLAEGLLMYLPATAQDGLFTEIGGLSAV---GSRIAVE 204 (297)
T ss_dssp EEEEECSCGGGSCHHHHHHHHHHHHHTCCT---TCEEEEE
T ss_pred EEEEEccccccCCHHHHHHHHHHHHHhCCC---CCEEEEE
Confidence 466777899999999999999999999999 8765543
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=97.00 E-value=0.00019 Score=60.88 Aligned_cols=74 Identities=47% Similarity=0.888 Sum_probs=59.1
Q ss_pred cccCCCchhhhhhcCHHHHHHHHHHHHHhhhh---------c-cccccceeeccCCCchhHHHHHHHcCCCcccCCCccc
Q 044482 2 RAHNGLHLFDYASKDARLQNLFNQSMHNHTAI---------G-FEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPH 71 (345)
Q Consensus 2 ~~~~g~~~~~~~~~~~~~~~~f~~~~~l~~a~---------~-l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~ 71 (345)
+.++|+++|+|+.++|+..+.|..+|...+.. . +.+.-.++|.+||.|.-+.+|+++.+-++++.+|.|.
T Consensus 36 ~~~~G~~~~~~~~~~p~~~~~F~~aM~~~~~~~~~~~~~~~~~~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~ 115 (243)
T d1kyza2 36 NKAYGMTAFEYHGTDPRFNKVFNKGMSDHSTITMKKILETYTGFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH 115 (243)
T ss_dssp HHHHSSCHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHHHHCCTTSSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT
T ss_pred HhhcCCCHHHHHHhCHHHHHHHHHHHhHhhhhHHHHHHHhcccccCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH
Confidence 34679999999999999999999888644322 1 1225568899999999999999999998999998887
Q ss_pred cccc
Q 044482 72 VIEN 75 (345)
Q Consensus 72 ~l~r 75 (345)
.++.
T Consensus 116 vi~~ 119 (243)
T d1kyza2 116 VIED 119 (243)
T ss_dssp TTTT
T ss_pred hhhh
Confidence 6543
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.0013 Score=52.73 Aligned_cols=104 Identities=21% Similarity=0.167 Sum_probs=70.7
Q ss_pred HHHHHhccCcccccceEEecCCccHHHHHHHHHC-CCCeEEEeehhhHhhhCCCceEEeccCCc-CC--------CC-C-
Q 044482 168 KKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-PQITGINFDLPYVIKNAPCVEHVEGDMFV-NV--------PS-G- 235 (345)
Q Consensus 168 ~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-p~~~~~~~Dlp~~i~~a~ri~~~~gd~~~-~~--------p~-~- 235 (345)
.+|.+.|.-+.+..+||||||+.|.++..+.++. +..+++++|+..+ +...++.++.+|+.+ .. .. .
T Consensus 11 ~EI~~k~~l~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~ 89 (180)
T d1ej0a_ 11 DEIQQSDKLFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-DPIVGVDFLQGDFRDELVMKALLERVGDSKV 89 (180)
T ss_dssp HHHHHHHCCCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred HHHHHHhCccCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-cccCCceEeecccccchhhhhhhhhccCcce
Confidence 3566677646677899999999999999999864 4478999998543 222378889999876 21 11 2
Q ss_pred CEEEeccccccCC----hh-----HHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 236 QAIFTKSVLLNWS----DE-----QCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 236 D~i~~~~vlh~~~----d~-----~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
|+|++--...--. |+ -+...|.-+.+.|++ ||.+++-
T Consensus 90 DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~---gG~fV~K 135 (180)
T d1ej0a_ 90 QVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAP---GGSFVVK 135 (180)
T ss_dssp EEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred eEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCC---CCcEEEE
Confidence 8877754432111 11 123456667888999 9988776
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=96.86 E-value=0.002 Score=53.86 Aligned_cols=92 Identities=10% Similarity=0.006 Sum_probs=61.7
Q ss_pred ccceEEecCCccHHHHHHHH----HCCCCeEEEeeh-hhHhhhCC----CceEEeccCCc-C-C---CC--CCEEEeccc
Q 044482 180 LKKLVDVASCLGANMSLIVN----TYPQITGINFDL-PYVIKNAP----CVEHVEGDMFV-N-V---PS--GQAIFTKSV 243 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~----~~p~~~~~~~Dl-p~~i~~a~----ri~~~~gd~~~-~-~---p~--~D~i~~~~v 243 (345)
+.+||+||++.|..+..++. ..++.+++++|+ +....... |++++.||..+ . + .+ .|.|++-..
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfID~~ 160 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASDMENITLHQGDCSDLTTFEHLREMAHPLIFIDNA 160 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGGCTTEEEEECCSSCSGGGGGGSSSCSSEEEEESS
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhhccccceeeeecccccHHHHHHHHhcCCCEEEEcCC
Confidence 47899999999987765543 346789999998 44433322 99999999765 2 1 12 288777543
Q ss_pred cccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 244 LLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 244 lh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
|.. +.+..-+ .....|+| ||.++|. |.+
T Consensus 161 -H~~--~~v~~~~-~~~~lLk~---GG~iIve-D~i 188 (232)
T d2bm8a1 161 -HAN--TFNIMKW-AVDHLLEE---GDYFIIE-DMI 188 (232)
T ss_dssp -CSS--HHHHHHH-HHHHTCCT---TCEEEEC-SCH
T ss_pred -cch--HHHHHHH-HHhcccCc---CCEEEEE-cCC
Confidence 543 3223334 46688999 9988777 653
|
| >d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator IclR, N-terminal domain domain: Transcriptional regulator IclR, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.65 E-value=3.8e-05 Score=52.74 Aligned_cols=54 Identities=9% Similarity=-0.063 Sum_probs=45.0
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe-EeeecCCCc
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV-VMYNLFPGA 99 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~-~~y~~t~~s 99 (345)
|.+.+ ...++|.|+.|||++++. ++..+.|+|..|...|++++++ ++|.+++-.
T Consensus 10 IL~~~-a~~~~~~s~~eia~~~~~-------~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l 64 (75)
T d1mkma1 10 ILDFI-VKNPGDVSVSEIAEKFNM-------SVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKL 64 (75)
T ss_dssp HHHHH-HHCSSCBCHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEECTTSCEEECTHH
T ss_pred HHHHH-HhCCCCCCHHHHHHHHCc-------CHHHHHHHHHHHHHCCCEEECCCCCEeecHHH
Confidence 66677 444568999999999999 6889999999999999999874 479888654
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0013 Score=55.76 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=57.5
Q ss_pred HHHHHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-------CceEEeccCCc-CCCC--
Q 044482 166 VMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-------CVEHVEGDMFV-NVPS-- 234 (345)
Q Consensus 166 ~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-------ri~~~~gd~~~-~~p~-- 234 (345)
....+++... ......||+||||.|.++..|+++... ++++|+ +.+++..+ +++++.+|+++ ++++
T Consensus 9 ~~~~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~~~~~~ 85 (252)
T d1qyra_ 9 VIDSIVSAIN-PQKGQAMVEIGPGLAALTEPVGERLDQ--LTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFNFGELA 85 (252)
T ss_dssp HHHHHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTCSC--EEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCCHHHHH
T ss_pred HHHHHHHhcC-CCCCCEEEEECCCchHHHHHHHccCCc--eEEEEeccchhHHHHHHhhhccchhHHhhhhhhhcccccc
Confidence 3456777776 677789999999999999999988654 555555 55544322 79999999997 4431
Q ss_pred ---C-CEEEeccccccCChh
Q 044482 235 ---G-QAIFTKSVLLNWSDE 250 (345)
Q Consensus 235 ---~-D~i~~~~vlh~~~d~ 250 (345)
+ -+.++.|+=++.+-+
T Consensus 86 ~~~~~~~~vvgNlPY~Iss~ 105 (252)
T d1qyra_ 86 EKMGQPLRVFGNLPYNISTP 105 (252)
T ss_dssp HHHTSCEEEEEECCTTTHHH
T ss_pred cccCCCeEEEecchHHHHHH
Confidence 2 456666665555444
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=96.45 E-value=0.00021 Score=60.99 Aligned_cols=84 Identities=21% Similarity=0.323 Sum_probs=64.5
Q ss_pred ccCCCchhhhhhcCHHHHHHHHHHHHHhh---------hhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccc
Q 044482 3 AHNGLHLFDYASKDARLQNLFNQSMHNHT---------AIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVI 73 (345)
Q Consensus 3 ~~~g~~~~~~~~~~~~~~~~f~~~~~l~~---------a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l 73 (345)
..+|+++|+|+..+|+....|..+|...+ .+++.+.-.+||.++|.|..+.+|+++.+-++++..|.|..+
T Consensus 38 ~~~G~~~~e~~~~~p~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dlp~~~ 117 (256)
T d1qzza2 38 GRYGRPFWEDLSADVALADSFDALMSCDEDLAYEAPADAYDWSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPA 117 (256)
T ss_dssp HHHSSCHHHHHHHCHHHHHHHHHTCGGGSTTTTHHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEECHHHH
T ss_pred hhhCCCHHHHHHhCHHHHHHHHHHHHhhHHHHHHHHHhcCCCccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecChHHH
Confidence 45799999999999999999998876443 234444566899999999999999999988788777777777
Q ss_pred cccCCCCccCcee
Q 044482 74 ENASSSPVSRNIS 86 (345)
Q Consensus 74 ~rlL~~L~~~gl~ 86 (345)
...-+.+...|+-
T Consensus 118 ~~a~~~~~~~~~~ 130 (256)
T d1qzza2 118 ERARRRFADAGLA 130 (256)
T ss_dssp HHHHHHHHHTTCT
T ss_pred HHHHHHHhhcCCc
Confidence 6655555555543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.45 E-value=0.021 Score=49.86 Aligned_cols=100 Identities=8% Similarity=0.102 Sum_probs=80.5
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeehhhHhhhCC------------------------------CceEEeccCCc
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDLPYVIKNAP------------------------------CVEHVEGDMFV 230 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dlp~~i~~a~------------------------------ri~~~~gd~~~ 230 (345)
..||-+|||.=...-.+...+|+++++-+|+|++++.-+ +..++..|+.+
T Consensus 98 ~QVV~LGaG~DTr~~Rl~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~DL~d 177 (328)
T d1rjda_ 98 VQVVNLGCGSDLRMLPLLQMFPHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDLND 177 (328)
T ss_dssp EEEEEETCTTCCTHHHHHHHCTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCTTC
T ss_pred cEEEEeCCccchHHHHhhccCCCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecCCCC
Confidence 579999999999999999999999999999999876221 57788888875
Q ss_pred -CCC----------CC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCCCCC
Q 044482 231 -NVP----------SG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPESPE 285 (345)
Q Consensus 231 -~~p----------~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~~~~ 285 (345)
... +. -+++.--||.+++.+++.++|+.+.+..+. |.+++. |++.+..+.
T Consensus 178 ~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~----~~~i~Y-E~i~~~~p~ 239 (328)
T d1rjda_ 178 ITETTRLLDVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSH----GLWISY-DPIGGSQPN 239 (328)
T ss_dssp HHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSS----EEEEEE-EECCCCSTT
T ss_pred cHhhHHHHHccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCC----ceEEEe-ccCCCCCCC
Confidence 211 11 467888999999999999999999998865 778888 999765443
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=96.04 E-value=0.00077 Score=57.15 Aligned_cols=84 Identities=14% Similarity=0.277 Sum_probs=62.4
Q ss_pred cccCCCchhhhhhcCHHHHHHHHHHHHHh---------hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCcccc
Q 044482 2 RAHNGLHLFDYASKDARLQNLFNQSMHNH---------TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHV 72 (345)
Q Consensus 2 ~~~~g~~~~~~~~~~~~~~~~f~~~~~l~---------~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~ 72 (345)
+.++|+++|+|+..+|+....|...|+-. .++++.+.-.+||.++|.|..+..||++.+-++++..|.|..
T Consensus 36 ~~~~G~~~~~~~~~~~~~~~~f~~~m~~~~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~~~ 115 (253)
T d1tw3a2 36 ESIYGKPFYEDLAGRPDLRASFDSLLACDQDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGT 115 (253)
T ss_dssp HHHHSSCHHHHHHTCHHHHHHHHHHHTTTTTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECTTH
T ss_pred hhccCCCHHHHHhhCHHHHHHHHHHHHHhHHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCHHH
Confidence 34679999999999999999999887543 233443355689999999999999999998767766666666
Q ss_pred ccccCCCCccCce
Q 044482 73 IENASSSPVSRNI 85 (345)
Q Consensus 73 l~rlL~~L~~~gl 85 (345)
+...-+.+...|+
T Consensus 116 ~~~a~~~~~~~~~ 128 (253)
T d1tw3a2 116 VDTARSYLKDEGL 128 (253)
T ss_dssp HHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhhc
Confidence 6555555555554
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=96.01 E-value=0.0054 Score=54.40 Aligned_cols=69 Identities=12% Similarity=0.225 Sum_probs=51.8
Q ss_pred HHHHhccCcccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC---------CceEEeccCCcCCC-----
Q 044482 169 KILEIYKGFKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP---------CVEHVEGDMFVNVP----- 233 (345)
Q Consensus 169 ~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~~~p----- 233 (345)
.+++..+ ..+..+|+|+-||.|.++..|+++. .+++++|. ++.++.|+ +++|+.+|..+.++
T Consensus 203 ~v~~~~~-~~~~~~vlDLycG~G~fsl~La~~~--~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 203 RALEWLD-VQPEDRVLDLFCGMGNFTLPLATQA--ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHT-CCTTCEEEEESCTTTTTHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHhhc-cCCCceEEEecccccccchhccccc--cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 3445444 5566899999999999999999865 46899998 77777665 79999999877332
Q ss_pred -CC-CEEEe
Q 044482 234 -SG-QAIFT 240 (345)
Q Consensus 234 -~~-D~i~~ 240 (345)
.. |++++
T Consensus 280 ~~~~d~vil 288 (358)
T d1uwva2 280 KNGFDKVLL 288 (358)
T ss_dssp TTCCSEEEE
T ss_pred hccCceEEe
Confidence 12 87766
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=95.94 E-value=0.0042 Score=56.61 Aligned_cols=105 Identities=16% Similarity=0.127 Sum_probs=70.6
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHCC-------------CCeEEEeeh-hhHhhhCC-----------Cc
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTYP-------------QITGINFDL-PYVIKNAP-----------CV 221 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~p-------------~~~~~~~Dl-p~~i~~a~-----------ri 221 (345)
++-+++.++ -....+|+|-.||+|.++.++.++.. +....++|. +.+...|+ ..
T Consensus 151 v~~mv~ll~-~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~~~~ 229 (425)
T d2okca1 151 IQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTDRS 229 (425)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSSCC
T ss_pred hHhhheecc-CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCccccc
Confidence 344455555 34567999999999999998877532 124778887 55544433 45
Q ss_pred eEEeccCCcCCCC-C-CEEEecccccc--CC-------------hhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 222 EHVEGDMFVNVPS-G-QAIFTKSVLLN--WS-------------DEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 222 ~~~~gd~~~~~p~-~-D~i~~~~vlh~--~~-------------d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
....+|.+...+. . |+|+++=-+.. +. ...-...+.++.+.|++ ||++.++
T Consensus 230 ~i~~~d~l~~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~---~G~~~iI 297 (425)
T d2okca1 230 PIVCEDSLEKEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKT---GGRAAVV 297 (425)
T ss_dssp SEEECCTTTSCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred eeecCchhhhhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCC---CCeEEEE
Confidence 6788888875443 3 99988744421 11 01124589999999999 9988777
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=95.25 E-value=0.019 Score=46.20 Aligned_cols=102 Identities=11% Similarity=0.007 Sum_probs=65.5
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEe----ccCCcC-----CCCC-CEEEecc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVE----GDMFVN-----VPSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~----gd~~~~-----~p~~-D~i~~~~ 242 (345)
.+...+||.+|||. |.++..+++.....++++.|. ++-++.++ ....+. .|+.+. -+.+ |+++-.-
T Consensus 23 v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~v 102 (195)
T d1kola2 23 VGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAV 102 (195)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECC
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECc
Confidence 67788999999988 778888888887778999998 67777766 333222 111110 1224 7776432
Q ss_pred cc------cc-CChhHHHHHHHHHHhhCCCCCCCcEEEEEeccCCCC
Q 044482 243 VL------LN-WSDEQCLKILKNCYDALPKSRKHGRTQLRSKRGLPE 282 (345)
Q Consensus 243 vl------h~-~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~~~~ 282 (345)
-. |+ .........|+.+.+.++| ||++.++ -...++
T Consensus 103 G~~~~~~~~~~~~~~~~~~~l~~~~~~~r~---gG~v~~~-G~~~~~ 145 (195)
T d1kola2 103 GFEARGHGHEGAKHEAPATVLNSLMQVTRV---AGKIGIP-GLYVTE 145 (195)
T ss_dssp CTTCBCSSTTGGGSBCTTHHHHHHHHHEEE---EEEEEEC-SCCCSC
T ss_pred cccccCCcccceeecCcHHHHHHHHHHHhc---CCEEEEe-eecCCC
Confidence 10 00 0111123579999999999 9999999 654433
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=95.02 E-value=0.012 Score=46.95 Aligned_cols=89 Identities=9% Similarity=0.017 Sum_probs=57.5
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC-----------CceEEeccCCc--CCC--CC--CEEEec
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP-----------CVEHVEGDMFV--NVP--SG--QAIFTK 241 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~-----------ri~~~~gd~~~--~~p--~~--D~i~~~ 241 (345)
..+|||+-||+|.++.+.+.+-.. +++.+|. +..+...+ ...+...|.++ ... .. |+|++-
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~-~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAK-KVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCS-EEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred cceEeecccCccceeeeeeeecce-eeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 358999999999999999988643 7888887 54443222 45666676654 112 22 999885
Q ss_pred cccccCChhHHHHHHHHHHh--hCCCCCCCcEEEEE
Q 044482 242 SVLLNWSDEQCLKILKNCYD--ALPKSRKHGRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~--aL~p~~~gG~lli~ 275 (345)
=-... .....+|..+.+ .|++ +|.+++-
T Consensus 123 PPY~~---~~~~~~l~~l~~~~~L~~---~~liiiE 152 (183)
T d2ifta1 123 PPFHF---NLAEQAISLLCENNWLKP---NALIYVE 152 (183)
T ss_dssp CCSSS---CHHHHHHHHHHHTTCEEE---EEEEEEE
T ss_pred hhHhh---hhHHHHHHHHHHhCCcCC---CcEEEEE
Confidence 44322 233456666654 5888 7655443
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.46 E-value=0.027 Score=49.11 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=38.4
Q ss_pred cccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC----C--CceEEeccCCc
Q 044482 179 ELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA----P--CVEHVEGDMFV 230 (345)
Q Consensus 179 ~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a----~--ri~~~~gd~~~ 230 (345)
...+|||||.|.|.++..|+++..--++++++. +...+.. . +++++.+|++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~~~~~ii~~D~l~ 101 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEGSPLQILKRDPYD 101 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTTSSCEEECSCTTC
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccCCCcEEEeCchhh
Confidence 356899999999999999998742236777776 3333322 2 89999999874
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.81 E-value=0.094 Score=45.24 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=63.2
Q ss_pred cccccceEEecCCccHHHHHHHHHCC-CCeEEEeeh-hhHhhhCC---------CceEEeccCCc-CCCC-C-CEEEec-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYP-QITGINFDL-PYVIKNAP---------CVEHVEGDMFV-NVPS-G-QAIFTK- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p-~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~-~~p~-~-D~i~~~- 241 (345)
-....+|||+.+|.|.=+..++.... +..++..|. +.-+...+ ++.....|... +... . |.|++-
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~~~~~fD~ILvDa 193 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGELNVEFDKILLDA 193 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGGCCCEEEEEEEC
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccccccccccEEEEcc
Confidence 34567999999999999999988754 567888998 43333222 56667777665 2222 2 777761
Q ss_pred -----c-------ccccCChhHH-------HHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 -----S-------VLLNWSDEQC-------LKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 -----~-------vlh~~~d~~~-------~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
. +...|+.++. .+||+++.+.+|| ||+|+-.
T Consensus 194 PCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~---gG~lVYs 243 (313)
T d1ixka_ 194 PCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKP---GGILVYS 243 (313)
T ss_dssp CTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEE---EEEEEEE
T ss_pred ccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCC---CcEEEEe
Confidence 1 1222333322 4789999999999 9976665
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.94 E-value=0.09 Score=44.70 Aligned_cols=96 Identities=13% Similarity=0.177 Sum_probs=63.1
Q ss_pred cccccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhC----C-----CceEEeccCCc--CC-CCC-CEEEec-
Q 044482 177 FKELKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNA----P-----CVEHVEGDMFV--NV-PSG-QAIFTK- 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a----~-----ri~~~~gd~~~--~~-p~~-D~i~~~- 241 (345)
-....+|||+.+|.|.=+..+++..++.+++..|. +.-+... + .+.....|... .. +.. |.|++-
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 45567999999999999999999988888999997 3322221 1 23333344332 11 222 777762
Q ss_pred -----ccc-------ccCChhH-------HHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 242 -----SVL-------LNWSDEQ-------CLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 242 -----~vl-------h~~~d~~-------~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.++ ..|+..+ -.+||+++.+.|+| ||+|+-.
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~---gG~lvYs 229 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKT---GGTLVYA 229 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEE---EEEEEEE
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCC---CceEEEe
Confidence 222 3344332 24789999999999 9977666
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.56 E-value=0.46 Score=36.31 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=53.5
Q ss_pred ceEEecCCc-c-HHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C-ceEEeccCCc-CCCCCCEEEeccccccCChhHHHH
Q 044482 182 KLVDVASCL-G-ANMSLIVNTYPQITGINFDL-PYVIKNAP--C-VEHVEGDMFV-NVPSGQAIFTKSVLLNWSDEQCLK 254 (345)
Q Consensus 182 ~vlDiGgG~-G-~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r-i~~~~gd~~~-~~p~~D~i~~~~vlh~~~d~~~~~ 254 (345)
+|+=||||. | .++..|.+..+..+++++|. ++.++.++ . +....-+... .....|+|++. .+.+....
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila-----~p~~~~~~ 77 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLS-----SPVRTFRE 77 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEEC-----SCHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhcccccccccc-----CCchhhhh
Confidence 467789985 3 36667777778889999998 77777666 2 2222222222 12234888765 45667788
Q ss_pred HHHHHHhhCCC
Q 044482 255 ILKNCYDALPK 265 (345)
Q Consensus 255 iL~~~~~aL~p 265 (345)
+|.++.+.+++
T Consensus 78 vl~~l~~~~~~ 88 (171)
T d2g5ca2 78 IAKKLSYILSE 88 (171)
T ss_dssp HHHHHHHHSCT
T ss_pred hhhhhhccccc
Confidence 99999999998
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.31 E-value=0.14 Score=39.55 Aligned_cols=90 Identities=14% Similarity=-0.042 Sum_probs=56.3
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cce-EEe-ccC---CcCCCCC-CEEEec-cccc
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVE-HVE-GDM---FVNVPSG-QAIFTK-SVLL 245 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~-~~~-gd~---~~~~p~~-D~i~~~-~vlh 245 (345)
.....+|+-+|+| .|.++..+++.. +++++++|. ++-++.++ ... ++. .+- .+....+ |+++-. ..-+
T Consensus 25 ~~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~ 103 (168)
T d1piwa2 25 CGPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLT 103 (168)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCST
T ss_pred cCCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCc
Confidence 6677889999987 788888888765 689999997 56566665 221 221 111 1122234 766542 2222
Q ss_pred cCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 246 NWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 246 ~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
.. .+..+.+.|+| +|+++++ -.
T Consensus 104 ~~-------~~~~~~~~l~~---~G~iv~~-G~ 125 (168)
T d1piwa2 104 DI-------DFNIMPKAMKV---GGRIVSI-SI 125 (168)
T ss_dssp TC-------CTTTGGGGEEE---EEEEEEC-CC
T ss_pred cc-------hHHHHHHHhhc---cceEEEe-cc
Confidence 11 14456788999 9999999 53
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=91.18 E-value=0.11 Score=48.12 Aligned_cols=104 Identities=16% Similarity=0.104 Sum_probs=64.0
Q ss_pred HHHHHHhccCcccccceEEecCCccHHHHHHHHHC----CC--------------CeEEEeeh-hhHhhhCC--------
Q 044482 167 MKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY----PQ--------------ITGINFDL-PYVIKNAP-------- 219 (345)
Q Consensus 167 ~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~----p~--------------~~~~~~Dl-p~~i~~a~-------- 219 (345)
++-+++.++ -....+|+|-.||+|.++....+.. .. ....++|+ +.+...++
T Consensus 153 v~~mv~ll~-~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~~~ 231 (524)
T d2ar0a1 153 IKTIIHLLK-PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLHDI 231 (524)
T ss_dssp HHHHHHHHC-CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTTTC
T ss_pred hHhhhhccc-CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhhcc
Confidence 444455554 3445799999999999998766532 11 14788888 55544433
Q ss_pred ------CceEEeccCCc-CC-C-CC-CEEEeccccc--cC-----------ChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 220 ------CVEHVEGDMFV-NV-P-SG-QAIFTKSVLL--NW-----------SDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 220 ------ri~~~~gd~~~-~~-p-~~-D~i~~~~vlh--~~-----------~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
.-.+..+|.+. +. + .. |+|+.+=-+- .+ ++.+ ...+.++.+.|+| ||++.++
T Consensus 232 ~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~-~~Fi~~~l~~Lk~---gGr~aiI 306 (524)
T d2ar0a1 232 EGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQ-LCFMQHIIETLHP---GGRAAVV 306 (524)
T ss_dssp CCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHH-HHHHHHHHHHEEE---EEEEEEE
T ss_pred cccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhcccccccc-HHHHHHHHHhccc---cCcEEEE
Confidence 22344555554 21 1 22 8888764331 11 1122 4589999999999 9998877
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=90.20 E-value=1.6 Score=32.93 Aligned_cols=89 Identities=11% Similarity=-0.003 Sum_probs=57.3
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEeccCCc------------CCCCC-CEE
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEGDMFV------------NVPSG-QAI 238 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~gd~~~------------~~p~~-D~i 238 (345)
.....+|+-+||| .|.++..+++.. +.+++++|. ++-++.++ .. ..+..|-.. ..+.+ |++
T Consensus 24 ~~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~v 102 (170)
T d1e3ja2 24 VQLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVT 102 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEE
T ss_pred CCCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCcee
Confidence 5666788889977 788888888776 579999998 56566555 11 111111111 11233 776
Q ss_pred EeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 239 FTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 239 ~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
+-. ... ...+..+.+.++| +|++++. -.
T Consensus 103 id~------~g~--~~~~~~a~~~~~~---~G~iv~~-G~ 130 (170)
T d1e3ja2 103 IDC------SGN--EKCITIGINITRT---GGTLMLV-GM 130 (170)
T ss_dssp EEC------SCC--HHHHHHHHHHSCT---TCEEEEC-SC
T ss_pred eec------CCC--hHHHHHHHHHHhc---CCceEEE-ec
Confidence 532 111 2467888899999 9999999 53
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=89.79 E-value=0.15 Score=39.81 Aligned_cols=91 Identities=16% Similarity=0.048 Sum_probs=57.2
Q ss_pred cccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEe---ccCC-------c-CCCCC-CEEE
Q 044482 177 FKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVE---GDMF-------V-NVPSG-QAIF 239 (345)
Q Consensus 177 ~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~---gd~~-------~-~~p~~-D~i~ 239 (345)
.+...+||-+|+| .|.++..+++...--++++.|. ++-++.++ .. .++. .|.. + .-+.+ |+|+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~~g~Dvvi 105 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGADLTLNRRETSVEERRKAIMDITHGRGADFIL 105 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHHHTTTSCEEEEE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccceEEEeccccchHHHHHHHHHhhCCCCceEEe
Confidence 5667899999977 4889999998874337899997 65556555 11 1111 1111 1 11234 7766
Q ss_pred eccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 240 TKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 240 ~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
-.- .. ...++...+.|+| ||+++++ -..
T Consensus 106 d~v-----G~---~~~~~~a~~~l~~---~G~iv~~-G~~ 133 (182)
T d1vj0a2 106 EAT-----GD---SRALLEGSELLRR---GGFYSVA-GVA 133 (182)
T ss_dssp ECS-----SC---TTHHHHHHHHEEE---EEEEEEC-CCC
T ss_pred ecC-----Cc---hhHHHHHHHHhcC---CCEEEEE-eec
Confidence 321 11 1347788899999 9999988 543
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=89.08 E-value=0.69 Score=35.08 Aligned_cols=76 Identities=12% Similarity=-0.038 Sum_probs=48.6
Q ss_pred eEEecCC--ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--CceEEeccCCcCCCCCCEEEeccccccCChhHHHHHHH
Q 044482 183 LVDVASC--LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CVEHVEGDMFVNVPSGQAIFTKSVLLNWSDEQCLKILK 257 (345)
Q Consensus 183 vlDiGgG--~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri~~~~gd~~~~~p~~D~i~~~~vlh~~~d~~~~~iL~ 257 (345)
|.=||+| .+.++..|.++ +.+++++|. ++.++.++ .+.-...+..+...+.|+|++. .++....++++
T Consensus 3 I~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIila-----vp~~~~~~vl~ 75 (165)
T d2f1ka2 3 IGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLC-----TPIQLILPTLE 75 (165)
T ss_dssp EEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEEC-----SCHHHHHHHHH
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHhhccceeeeeccccccccccccc-----CcHhhhhhhhh
Confidence 4556776 34455566554 457889998 66666655 2211222323334456998864 46778889999
Q ss_pred HHHhhCCC
Q 044482 258 NCYDALPK 265 (345)
Q Consensus 258 ~~~~aL~p 265 (345)
++...+++
T Consensus 76 ~l~~~l~~ 83 (165)
T d2f1ka2 76 KLIPHLSP 83 (165)
T ss_dssp HHGGGSCT
T ss_pred hhhhhccc
Confidence 99999998
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.47 E-value=0.27 Score=43.34 Aligned_cols=87 Identities=11% Similarity=0.016 Sum_probs=61.6
Q ss_pred ccceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC------------------------CceEEeccCCc---C
Q 044482 180 LKKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIKNAP------------------------CVEHVEGDMFV---N 231 (345)
Q Consensus 180 ~~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~------------------------ri~~~~gd~~~---~ 231 (345)
..+|||..||+|..++..+...+..+++..|+ |..++.++ .+.+...|... .
T Consensus 46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~ 125 (375)
T d2dula1 46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE 125 (375)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence 46899999999999999888887778999999 76666554 13344445433 1
Q ss_pred CCCC-CEEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 232 VPSG-QAIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 232 ~p~~-D~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
..+. |+|.+-- +... ...|..+.++++. ||.|.|.
T Consensus 126 ~~~~fDvIDiDP----fGs~--~pfldsAi~a~~~---~Gll~vT 161 (375)
T d2dula1 126 RHRYFHFIDLDP----FGSP--MEFLDTALRSAKR---RGILGVT 161 (375)
T ss_dssp STTCEEEEEECC----SSCC--HHHHHHHHHHEEE---EEEEEEE
T ss_pred hcCcCCcccCCC----CCCc--HHHHHHHHHHhcc---CCEEEEE
Confidence 2223 7776653 2222 4689999999999 8877777
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.43 E-value=0.65 Score=39.23 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=40.4
Q ss_pred cccccceEEecCCccHHHHHHHHH-CCCCeEEEeeh-hhHhhhCC---------CceEEeccCCc
Q 044482 177 FKELKKLVDVASCLGANMSLIVNT-YPQITGINFDL-PYVIKNAP---------CVEHVEGDMFV 230 (345)
Q Consensus 177 ~~~~~~vlDiGgG~G~~~~~l~~~-~p~~~~~~~Dl-p~~i~~a~---------ri~~~~gd~~~ 230 (345)
.....+|||+++|.|.-+..+++. .+..+++.+|. +.-++..+ ++.+...|+..
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~ 156 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA 156 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhh
Confidence 445678999999999999998876 45678899998 44333322 67788888765
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.33 E-value=0.34 Score=37.17 Aligned_cols=95 Identities=20% Similarity=0.179 Sum_probs=59.2
Q ss_pred HhccCcccccceEEecC--CccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEec---cCCcC-----CCCC-C
Q 044482 172 EIYKGFKELKKLVDVAS--CLGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEG---DMFVN-----VPSG-Q 236 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGg--G~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~g---d~~~~-----~p~~-D 236 (345)
+..+ .....+||=+|| |.|..+..+++.....++++.|. ++-++.++ .. .++.. |+.+. .+.+ |
T Consensus 21 ~~~~-~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 21 RKAS-LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp HHTT-CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred HHhC-CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccch
Confidence 4444 566788999995 47778888888876678999997 55455444 21 12221 22111 1233 7
Q ss_pred EEEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEeccC
Q 044482 237 AIFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKRG 279 (345)
Q Consensus 237 ~i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~~ 279 (345)
+++-.. .. ...++.+.+.++| +|+++++ -..
T Consensus 100 ~vid~~-----g~---~~~~~~a~~~l~~---~G~iv~~-G~~ 130 (170)
T d1jvba2 100 AVIDLN-----NS---EKTLSVYPKALAK---QGKYVMV-GLF 130 (170)
T ss_dssp EEEESC-----CC---HHHHTTGGGGEEE---EEEEEEC-CSS
T ss_pred hhhccc-----cc---chHHHhhhhhccc---CCEEEEe-ccc
Confidence 666432 11 2457788899999 9999998 543
|
| >d1ub9a_ a.4.5.28 (A:) Hypothetical protein PH1061 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Hypothetical protein PH1061 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=85.90 E-value=0.019 Score=40.77 Aligned_cols=61 Identities=8% Similarity=0.011 Sum_probs=48.3
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
.-.++. |..+|... | +.|..+||+.+++ .+..+.+.++.|...|+++.... .|++|+.++.
T Consensus 15 ~p~r~~-IL~~L~~~-~-~~~~~eLa~~l~i-------s~~~vs~~l~~L~~~glV~~~~~~~d~r~~~~~LT~~G~~ 82 (100)
T d1ub9a_ 15 NPVRLG-IMIFLLPR-R-KAPFSQIQKVLDL-------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGME 82 (100)
T ss_dssp SHHHHH-HHHHHHHH-S-EEEHHHHHHHTTC-------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHH
T ss_pred CHHHHH-HHHHhccC-C-CeeHHHHHHHHhh-------ccccccHHHHHHhhhceeEEEEcCcCCccccccCCHHHHH
Confidence 444677 88888333 3 6899999999999 68899999999999999976532 6888887765
|
| >d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Transcriptional regulator OEOE1854 species: Oenococcus oeni [TaxId: 1247]
Probab=85.56 E-value=0.024 Score=42.40 Aligned_cols=63 Identities=10% Similarity=-0.013 Sum_probs=47.8
Q ss_pred hhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE-------eeecCCCccc
Q 044482 31 TAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV-------MYNLFPGAKE 101 (345)
Q Consensus 31 ~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~-------~y~~t~~s~~ 101 (345)
+..++. +...|...+++++|..+||+++++ +...+.++++.|...|++.+... .+.+|+.++.
T Consensus 28 t~~q~~-vL~~l~~~~~~~it~~ela~~~~~-------~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~ 97 (135)
T d3broa1 28 TGTQMT-IIDYLSRNKNKEVLQRDLESEFSI-------KSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANK 97 (135)
T ss_dssp CHHHHH-HHHHHHHTTTSCCBHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHT
T ss_pred CHHHHH-HHHHHHHcCCCCCCHHHHHHHHCc-------CHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHH
Confidence 344555 555664333456899999999999 67889999999999999977542 6777877765
|
| >d1z05a1 a.4.5.63 (A:10-80) Transcriptional regulator VC2007 N-terminal domain {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ROK associated domain domain: Transcriptional regulator VC2007 N-terminal domain species: Vibrio cholerae [TaxId: 666]
Probab=85.48 E-value=0.022 Score=37.71 Aligned_cols=44 Identities=11% Similarity=0.169 Sum_probs=36.6
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEe
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDV 90 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~ 90 (345)
|+.+|... | ++|..|||+.+|+ .+..+.++++.|...|++.+.+
T Consensus 11 Il~~l~~~-g-~~sr~eLa~~~gl-------S~~Tv~~~l~~L~~~Glv~e~~ 54 (71)
T d1z05a1 11 VYKLIDQK-G-PISRIDLSKESEL-------APASITKITRELIDAHLIHETT 54 (71)
T ss_dssp HHHHHHHH-C-SBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHc-C-CcCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCEEEec
Confidence 66677333 3 6999999999999 6788999999999999998754
|
| >d3ctaa1 a.4.5.28 (A:5-89) Ta1064 (RFK), N-terminal domain {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: MarR-like transcriptional regulators domain: Ta1064 (RFK), N-terminal domain species: Thermoplasma acidophilum [TaxId: 2303]
Probab=85.06 E-value=0.051 Score=37.27 Aligned_cols=46 Identities=9% Similarity=-0.014 Sum_probs=40.0
Q ss_pred chhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCCCccc
Q 044482 49 GVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFPGAKE 101 (345)
Q Consensus 49 ~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~~s~~ 101 (345)
++|..+||+++++ .+..+.++++.|...|++++..+ .|.+|+.+..
T Consensus 21 ~lt~~eLa~~l~i-------~~~~vs~~l~~Le~~GlV~r~~D~R~~~i~LT~~G~~ 70 (85)
T d3ctaa1 21 YLTSSKLADMLGI-------SQQSASRIIIDLEKNGYITRTVTKRGQILNITEKGLD 70 (85)
T ss_dssp ECCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHH
T ss_pred CCCHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeeeecccccccceECHHHHH
Confidence 6999999999999 68899999999999999987654 6777777765
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=84.95 E-value=0.51 Score=38.94 Aligned_cols=62 Identities=11% Similarity=0.227 Sum_probs=42.8
Q ss_pred cceEEecCCccHHHHHHHHHCCCCeEEEeeh-hhHhh-------hC----C-------CceEEeccCCcCCC---CC-CE
Q 044482 181 KKLVDVASCLGANMSLIVNTYPQITGINFDL-PYVIK-------NA----P-------CVEHVEGDMFVNVP---SG-QA 237 (345)
Q Consensus 181 ~~vlDiGgG~G~~~~~l~~~~p~~~~~~~Dl-p~~i~-------~a----~-------ri~~~~gd~~~~~p---~~-D~ 237 (345)
.+|||.=||.|.-+..++... .+++.++. |.+.. .+ . |++++.+|..+.+. +. |+
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv 167 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV 167 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred CEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence 589999999999999999884 67899997 43321 11 0 78888888765222 22 77
Q ss_pred EEecccc
Q 044482 238 IFTKSVL 244 (345)
Q Consensus 238 i~~~~vl 244 (345)
|++-=.+
T Consensus 168 IYlDPMF 174 (250)
T d2oyra1 168 VYLDPMF 174 (250)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7664433
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=83.26 E-value=0.87 Score=35.11 Aligned_cols=88 Identities=11% Similarity=-0.017 Sum_probs=58.1
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEe---ccCC-c-----CCCCC-CEEEec
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVE---GDMF-V-----NVPSG-QAIFTK 241 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~---gd~~-~-----~~p~~-D~i~~~ 241 (345)
.+...+|+=+|||. |.++..+++...-.++++.|. ++-++.++ .. .++. .|-. . ..+.+ |+++-.
T Consensus 26 v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~ 105 (174)
T d1e3ia2 26 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDC 105 (174)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEES
T ss_pred CCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEe
Confidence 66778899999887 999999999986667889998 55555555 11 1111 1110 0 01234 777532
Q ss_pred cccccCChhHHHHHHHHHHhhCCCCCCC-cEEEEE
Q 044482 242 SVLLNWSDEQCLKILKNCYDALPKSRKH-GRTQLR 275 (345)
Q Consensus 242 ~vlh~~~d~~~~~iL~~~~~aL~p~~~g-G~lli~ 275 (345)
.-. ...+.+..+.++| | |+++++
T Consensus 106 ------~G~--~~~~~~a~~~~~~---g~G~~v~v 129 (174)
T d1e3ia2 106 ------AGT--AQTLKAAVDCTVL---GWGSCTVV 129 (174)
T ss_dssp ------SCC--HHHHHHHHHTBCT---TTCEEEEC
T ss_pred ------ccc--chHHHHHHHHhhc---CCeEEEec
Confidence 211 2468889999999 7 899998
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=83.25 E-value=1.5 Score=38.07 Aligned_cols=63 Identities=10% Similarity=0.157 Sum_probs=40.1
Q ss_pred cCchhHHHHHHHHHHhhHHHHHHHHHhccCcccccceEEecCCccHHHHHHHHHC-------CCCeEEEeehhhH
Q 044482 147 MLPMMLNLFNQSMQNHTAIVMKKILEIYKGFKELKKLVDVASCLGANMSLIVNTY-------PQITGINFDLPYV 214 (345)
Q Consensus 147 ~~~~~~~~f~~~m~~~~~~~~~~i~~~~~~~~~~~~vlDiGgG~G~~~~~l~~~~-------p~~~~~~~Dlp~~ 214 (345)
+.|+....|.++.+..- ..+..... -+..-.||++|+|+|.++..+++.. ..++.+.++..+.
T Consensus 52 Tsp~is~~Fg~~ia~~~----~~~~~~~~-~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~ 121 (365)
T d1zkda1 52 TSPEISQMFGELLGLWS----ASVWKAAD-EPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPV 121 (365)
T ss_dssp SHHHHCHHHHHHHHHHH----HHHHHHTT-CCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHH
T ss_pred CCCchHHHHHHHHHHHH----HHHHHHhC-CCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchh
Confidence 34667777777664321 12333333 3445679999999999999887653 2345778887433
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=82.21 E-value=0.48 Score=36.54 Aligned_cols=93 Identities=17% Similarity=0.179 Sum_probs=56.8
Q ss_pred HHhccCcccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--C-ceEEec---cCCcC---C-CCC-CE
Q 044482 171 LEIYKGFKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--C-VEHVEG---DMFVN---V-PSG-QA 237 (345)
Q Consensus 171 ~~~~~~~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--r-i~~~~g---d~~~~---~-p~~-D~ 237 (345)
.+..+ .+...+|+=+|||. |.++..+++.....++++.|. +.-++.++ . ..++.. |+.+. . +.+ |+
T Consensus 21 ~~~~~-~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~ 99 (174)
T d1f8fa2 21 INALK-VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNF 99 (174)
T ss_dssp HTTTC-CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEE
T ss_pred HHhhC-CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcE
Confidence 44444 56677888888764 557777888776667788886 65566655 2 122221 12111 1 123 76
Q ss_pred EEeccccccCChhHHHHHHHHHHhhCCCCCCCcEEEEE
Q 044482 238 IFTKSVLLNWSDEQCLKILKNCYDALPKSRKHGRTQLR 275 (345)
Q Consensus 238 i~~~~vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~ 275 (345)
++-. ... ...++.+.+.++| +|+++++
T Consensus 100 vid~------~G~--~~~~~~~~~~~~~---~G~i~~~ 126 (174)
T d1f8fa2 100 ALES------TGS--PEILKQGVDALGI---LGKIAVV 126 (174)
T ss_dssp EEEC------SCC--HHHHHHHHHTEEE---EEEEEEC
T ss_pred EEEc------CCc--HHHHHHHHhcccC---ceEEEEE
Confidence 6532 111 2467888899999 9999998
|
| >d1r1ta_ a.4.5.5 (A:) SmtB repressor {Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: ArsR-like transcriptional regulators domain: SmtB repressor species: Cyanobacteria (Synechococcus), pcc7942 [TaxId: 1129]
Probab=81.50 E-value=0.2 Score=35.15 Aligned_cols=61 Identities=8% Similarity=0.005 Sum_probs=48.9
Q ss_pred HHHHhhhhccccccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE----eeecCC
Q 044482 26 SMHNHTAIGFEELNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV----MYNLFP 97 (345)
Q Consensus 26 ~~~l~~a~~l~~lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~----~y~~t~ 97 (345)
..+|.--.++. |...| .+| +.++.+||+.++. ....+..=|+.|...|+++.... .|++++
T Consensus 17 ~kaL~~p~Rl~-Il~~L-~~~--~~~v~ela~~l~i-------s~stvS~HL~~L~~aglV~~~r~G~~~~Y~l~~ 81 (98)
T d1r1ta_ 17 FAVLADPNRLR-LLSLL-ARS--ELCVGDLAQAIGV-------SESAVSHQLRSLRNLRLVSYRKQGRHVYYQLQD 81 (98)
T ss_dssp HHHHCCHHHHH-HHHHH-TTC--CBCHHHHHHHHTC-------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEESS
T ss_pred HHHhCCHHHHH-HHHHH-HcC--CcCHHHHHHHHCc-------CHHHHHHHHHHHHHCCceEEEEECCEEEEEECh
Confidence 35677777898 99999 653 6899999999999 57788899999999999965432 677664
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=81.45 E-value=0.58 Score=35.74 Aligned_cols=93 Identities=15% Similarity=0.040 Sum_probs=55.7
Q ss_pred HhccCcccccceEEecCC-ccHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEEeccCCc---CCCCC-CEEEecc
Q 044482 172 EIYKGFKELKKLVDVASC-LGANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHVEGDMFV---NVPSG-QAIFTKS 242 (345)
Q Consensus 172 ~~~~~~~~~~~vlDiGgG-~G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~~gd~~~---~~p~~-D~i~~~~ 242 (345)
+..+ .....+|+=+|+| .|.++..+++.. +.+.++.|. ++-.+.++ .. .++..+-.. ..-.+ |+++-.-
T Consensus 24 ~~~~-~~~G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~ 101 (168)
T d1uufa2 24 RHWQ-AGPGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTV 101 (168)
T ss_dssp HHTT-CCTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred HHhC-CCCCCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeee
Confidence 3444 6677788778865 588999999887 677778886 44445444 21 122111111 11134 7665432
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
- .+ ..++...+.++| +|+++++ -.
T Consensus 102 g-----~~---~~~~~~~~~l~~---~G~iv~~-G~ 125 (168)
T d1uufa2 102 A-----AP---HNLDDFTTLLKR---DGTMTLV-GA 125 (168)
T ss_dssp S-----SC---CCHHHHHTTEEE---EEEEEEC-CC
T ss_pred e-----cc---hhHHHHHHHHhc---CCEEEEe-cc
Confidence 1 11 236677789999 9999998 54
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=81.12 E-value=0.53 Score=36.39 Aligned_cols=90 Identities=10% Similarity=0.012 Sum_probs=57.7
Q ss_pred cccccceEEecCCc-cHHHHHHHHHCCCCeEEEeeh-hhHhhhCC--Cc-eEE---eccCCc---CC--CCC-CEEEecc
Q 044482 177 FKELKKLVDVASCL-GANMSLIVNTYPQITGINFDL-PYVIKNAP--CV-EHV---EGDMFV---NV--PSG-QAIFTKS 242 (345)
Q Consensus 177 ~~~~~~vlDiGgG~-G~~~~~l~~~~p~~~~~~~Dl-p~~i~~a~--ri-~~~---~gd~~~---~~--p~~-D~i~~~~ 242 (345)
.+...+|+=+|||. |.++..+++...-.++++.|. ++-++.++ .. .++ ..+..+ .. +.+ |+++-.-
T Consensus 25 ~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~ 104 (174)
T d1jqba2 25 IEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAG 104 (174)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECS
T ss_pred CCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEcc
Confidence 56677888899887 889999998765457999998 55566555 21 111 111111 11 234 7765432
Q ss_pred ccccCChhHHHHHHHHHHhhCCCCCCCcEEEEEecc
Q 044482 243 VLLNWSDEQCLKILKNCYDALPKSRKHGRTQLRSKR 278 (345)
Q Consensus 243 vlh~~~d~~~~~iL~~~~~aL~p~~~gG~lli~~d~ 278 (345)
- . ...++++.+.++| +|+++++ -.
T Consensus 105 g-----~---~~~~~~a~~~~~~---~G~iv~~-G~ 128 (174)
T d1jqba2 105 G-----G---SETLSQAVKMVKP---GGIISNI-NY 128 (174)
T ss_dssp S-----C---TTHHHHHHHHEEE---EEEEEEC-CC
T ss_pred C-----C---HHHHHHHHHHHhc---CCEEEEE-ee
Confidence 1 1 1357788889999 9999998 54
|
| >d1j5ya1 a.4.5.1 (A:3-67) Putative transcriptional regulator TM1602, N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Biotin repressor-like domain: Putative transcriptional regulator TM1602, N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.06 E-value=0.047 Score=35.34 Aligned_cols=52 Identities=13% Similarity=-0.027 Sum_probs=38.4
Q ss_pred ccceeeccCCCchhHHHHHHHcCCCcccCCCccccccccCCCCccCce-eeEEeEeeecCC
Q 044482 38 LNELVDVAGGLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNI-STIDVVMYNLFP 97 (345)
Q Consensus 38 lfd~L~~~gg~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl-~~~~~~~y~~t~ 97 (345)
|.+.| .....++|..+||+.+++ ...-++|=+..|...|+ +....+.|.+.+
T Consensus 12 Il~~L-~~~~~~vs~~~La~~l~V-------S~~TI~rdi~~L~~~G~~I~~~~gGY~L~~ 64 (65)
T d1j5ya1 12 IVRIL-ERSKEPVSGAQLAEELSV-------SRQVIVQDIAYLRSLGYNIVATPRGYVLAG 64 (65)
T ss_dssp HHHHH-HHCSSCBCHHHHHHHHTS-------CHHHHHHHHHHHHHHTCCCEEETTEEECCT
T ss_pred HHHHH-HHcCCCCcHHHHHHHHCC-------CHHHHHHHHHHHHHCCCeEEEeCCCEEeCC
Confidence 55566 332346999999999999 56788888888988997 554445887754
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| >d1ylfa1 a.4.5.55 (A:5-142) Hypothetical protein BC1842 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
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class: All alpha proteins fold: DNA/RNA-binding 3-helical bundle superfamily: "Winged helix" DNA-binding domain family: Transcriptional regulator Rrf2 domain: Hypothetical protein BC1842 species: Bacillus cereus [TaxId: 1396]
Probab=80.51 E-value=0.13 Score=38.41 Aligned_cols=46 Identities=11% Similarity=0.008 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHcCCCcccCCCccccccccCCCCccCceeeEEeE--eeecCCCc
Q 044482 47 GLGVNMSLIVNTYSQIRGINFDLPHVIENASSSPVSRNISTIDVV--MYNLFPGA 99 (345)
Q Consensus 47 g~~~t~~eLA~~~~~~~~~~~d~~~~l~rlL~~L~~~gl~~~~~~--~y~~t~~s 99 (345)
+.+.|.++||+++++ ++..++++|+.|...|+++-..+ .|.+..-.
T Consensus 21 ~~~vss~~IA~~~~i-------~~~~l~kil~~L~~aGlv~S~rG~GG~~L~~~p 68 (138)
T d1ylfa1 21 SSLCTSDYMAESVNT-------NPVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDL 68 (138)
T ss_dssp GGGCCHHHHHHHHTS-------CHHHHHHHHHHHHHTTSEEEC---CCEEESSCG
T ss_pred CCcCcHHHHHHHHCc-------CHHHHHHHHHHHHHCCCeEeecCCCCceecCCH
Confidence 346899999999999 78999999999999999965433 67775433
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