Citrus Sinensis ID: 044495

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270------
Protein Sequence
MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccccEEEccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEcccEEEEEccccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEHccccEcccHcccccccEEEEEEcccccccccccHHHHHHHHEccccccccccccccccccHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MATSKLEVLLTISFLICISYCLadqfkypracwptsplpepplcrddvdnLQFAQSLEHLEAELFLggglgygldkvAPYLKANLDNLTRAIITEfgyqevghlrcgHALLQCHKVCassrnflpsapimtryymvpyvglngytgsnpfLCGYLAKRLaagllspesgqdRIVREYLFGradqivkpyNYTVARMKGFLSLRSLELNRRLVAmsrpwafnsfsyprspeEILRISygtgnehvpgrffpqggkwkncktskEENLMLQLLCRKEV
Flexible Loop (DISEMBL)
MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGllspesgqDRIVREYLFgradqivkpyNYTVARMKGFLSLRSLELNRRLVAMSrpwafnsfsyprspEEILRISYGTGNehvpgrffpqggkwkncktskeenlmlqllcrkev
Low Complexity Region (SEG)
MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSlehleaelflggglgyglDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFlslrslelnrrlVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Disordered region (IsUnstruct)
*****LEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKT*****LMLQLL*****
Disordered Region (DISOPRED)
***SKLEVLLTISFLICISYCLADQFKYPRA*************RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKE*
Disordered Region (DISEMBL)
MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Disordered Region (DISPRO)
****KLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKE*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKTSKEENLMLQLLCRKEV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	276	2.2.26 [Sep-21-2011]
P22242	313	Desiccation-related prote	N/A	no	0.771	0.680	0.310	7e-23

>sp|P22242|DRPE_CRAPL Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1

 Score =  107 bits (268), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/264 (31%), Positives = 117/264 (44%), Gaps = 51/264 (19%)

Query: 45  RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYL-----------KANLDNLTRAII 93
           + DV  L+F  +LE LEAE F     G G+D++ P L           KANL    R II
Sbjct: 37  KSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDII 96

Query: 94  TEFGYQEVGHLRCGHALLQCHK---VCASSRNF---LPSA------PIMTRY-------- 133
            +F YQE GH+R   + ++      +  S+++F   + SA      P    Y        
Sbjct: 97  AQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLL 156

Query: 134 --YMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNY 191
             Y+VPYVGL GY G+NP L   ++++L AGLL+ E+GQD I+R  L+ RA   V+PY  
Sbjct: 157 ACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAIIRALLYERATDKVEPYGI 216

Query: 192 TVARMK------------------GFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEIL 233
           TVA                     G +    L    ++         NS ++PR+PE  L
Sbjct: 217 TVAEFTNKISELRNKLGDKGVKDLGLIVEPELGAEGKISGNVLAGDKNSLAFPRTPERCL 276

Query: 234 RISYGTGNEHVPGRFFPQGGKWKN 257
                      P  F P+    K+
Sbjct: 277 GSCTAAAMRPSPAAFIPKAPTGKS 300

Craterostigma plantagineum (taxid: 4153)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
225429860	315	PREDICTED: desiccation-related protein P	0.880	0.771	0.370	8e-42
296081802	292	unnamed protein product [Vitis vinifera]	0.804	0.760	0.385	1e-41
147797908	844	hypothetical protein VITISV_023045 [Viti	0.815	0.266	0.394	6e-41
449462134	310	PREDICTED: desiccation-related protein P	0.768	0.683	0.378	6e-37
356529093	313	PREDICTED: desiccation-related protein P	0.75	0.661	0.396	7e-37
255582162	303	conserved hypothetical protein [Ricinus	0.793	0.722	0.392	7e-37
297852412	315	hypothetical protein ARALYDRAFT_891606 [	0.923	0.809	0.387	1e-36
356555981	314	PREDICTED: desiccation-related protein P	0.764	0.671	0.390	1e-36
255556470	311	conserved hypothetical protein [Ricinus	0.873	0.774	0.369	7e-36
357448841	302	Desiccation-related protein PCC13-62 [Me	0.771	0.705	0.377	9e-36

>gi|225429860|ref|XP_002283317.1| PREDICTED: desiccation-related protein PCC13-62-like isoform 1 [Vitis vinifera]

 Score =  176 bits (447), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 114/308 (37%), Positives = 151/308 (49%), Gaps = 65/308 (21%)

Query: 11  TISFLICISYCLADQFKYPR--ACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGG 68
           ++  LI +  C  + F       C P  P     +   DV+ LQFA++LEHLEA+ FL G
Sbjct: 8   SLVLLIFMVSCSVNIFMADSEPVCQPAYPAHAIAVDEGDVNLLQFAENLEHLEADYFLWG 67

Query: 69  GLGYGLDKVAPYL-----------KANLDNLTRAIITEFGYQEVGHLRC----------- 106
            LGYGLD+VAP L           KA LDNLT  IITEF Y+EV HLR            
Sbjct: 68  ALGYGLDEVAPQLVMGGPPPIGAKKAKLDNLTLNIITEFAYEEVAHLRILKRTVGGFPRP 127

Query: 107 -----------------GHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNP 149
                            G+AL+        S +++ S       Y++PY+GL  Y G+NP
Sbjct: 128 LMDLSAGNFAKLIDSAFGYALVPPFDPYHDSLSYMISC------YVLPYMGLVAYVGTNP 181

Query: 150 FLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARM------------- 196
            L GY +KRL AGLL  ESGQD ++R YL+ RA + V PY +TVA               
Sbjct: 182 LLIGYYSKRLLAGLLGVESGQDAVIRTYLYERAKEQVHPYKHTVAEFTARISELRNRLGK 241

Query: 197 -----KGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQ 251
                +G +  + L    R          +S SY R+P E+LRI Y TG+EH+PG F+P+
Sbjct: 242 CGIKDEGIIVPKELGAENRTTTNVLSSDADSISYMRTPAEVLRIVYSTGDEHIPGGFYPK 301

Query: 252 GGKWKNCK 259
           GG  K  +
Sbjct: 302 GGNGKIAR 309

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081802|emb|CBI20807.3| unnamed protein product [Vitis vinifera]

 Score =  176 bits (445), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/285 (38%), Positives = 143/285 (50%), Gaps = 63/285 (22%)

Query: 32  CWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYL---------- 81
           C P  P     +   DV+ LQFA++LEHLEA+ FL G LGYGLD+VAP L          
Sbjct: 8   CQPAYPAHAIAVDEGDVNLLQFAENLEHLEADYFLWGALGYGLDEVAPQLVMGGPPPIGA 67

Query: 82  -KANLDNLTRAIITEFGYQEVGHLRC----------------------------GHALLQ 112
            KA LDNLT  IITEF Y+EV HLR                             G+AL+ 
Sbjct: 68  KKAKLDNLTLNIITEFAYEEVAHLRILKRTVGGFPRPLMDLSAGNFAKLIDSAFGYALVP 127

Query: 113 CHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDR 172
                  S +++ S       Y++PY+GL  Y G+NP L GY +KRL AGLL  ESGQD 
Sbjct: 128 PFDPYHDSLSYMISC------YVLPYMGLVAYVGTNPLLIGYYSKRLLAGLLGVESGQDA 181

Query: 173 IVREYLFGRADQIVKPYNYTVARM------------------KGFLSLRSLELNRRLVAM 214
           ++R YL+ RA + V PY +TVA                    +G +  + L    R    
Sbjct: 182 VIRTYLYERAKEQVHPYKHTVAEFTARISELRNRLGKCGIKDEGIIVPKELGAENRTTTN 241

Query: 215 SRPWAFNSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCK 259
                 +S SY R+P E+LRI Y TG+EH+PG F+P+GG  K  +
Sbjct: 242 VLSSDADSISYMRTPAEVLRIVYSTGDEHIPGGFYPKGGNGKIAR 286

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147797908|emb|CAN69464.1| hypothetical protein VITISV_023045 [Vitis vinifera]

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 139/276 (50%), Gaps = 51/276 (18%)

Query: 32  CWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYL---------- 81
           C P  P     +   DV+ LQFA++LEHLEA+ FL G LGYGLD+VAP L          
Sbjct: 560 CQPAYPAHAIAVDEGDVNLLQFAENLEHLEADYFLWGALGYGLDEVAPQLVMGGPPPIGA 619

Query: 82  -KANLDNLTRAIITEFGYQEVGHLRCGHALL-------------QCHKVCASSRNFLPSA 127
            KA LDNLT  IITEF Y+EV HLR     +                K+  S+  +    
Sbjct: 620 KKAKLDNLTLNIITEFAYEEVAHLRXLKRTVGGFPRPLMDLSAGNFAKLIDSAFGYALVP 679

Query: 128 PI---------MTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL 178
           P          M   Y++PY+GL  Y G+NP L GY +KRL AGLL  ESGQD ++R YL
Sbjct: 680 PFDPYHDSLSYMISCYVLPYMGLVAYVGTNPLLIGYYSKRLLAGLLGVESGQDAVIRTYL 739

Query: 179 FGRADQIVKPYNYTVARM------------------KGFLSLRSLELNRRLVAMSRPWAF 220
           + RA + V PY +TVA                    +G +  + L    R          
Sbjct: 740 YERAKEQVHPYKHTVAEFTARISELRNRLGKCGIKDEGIIVPKELGAENRTTTNVLSSDA 799

Query: 221 NSFSYPRSPEEILRISYGTGNEHVPGRFFPQGGKWK 256
           +S SY R+P E LRI Y TG+EH+PG F+P+GG  K
Sbjct: 800 DSISYMRTPAEXLRIVYSTGDEHIPGGFYPKGGNGK 835

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449462134|ref|XP_004148796.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus] gi|449511873|ref|XP_004164077.1| PREDICTED: desiccation-related protein PCC13-62-like [Cucumis sativus]

 Score =  160 bits (405), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 104/275 (37%), Positives = 136/275 (49%), Gaps = 63/275 (22%)

Query: 43  LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYL-----------KANLDNLTRA 91
           + + D D L+F  +LE+LEAE FL G LGYGLDKVAP L           +A LD   R 
Sbjct: 37  IPQGDADLLEFPLNLEYLEAEFFLYGSLGYGLDKVAPNLTMGGPPPIGAKRAKLDPFIRD 96

Query: 92  IITEFGYQEVGHLRC----------------------------GHALLQCHKVCASSRNF 123
           II +FGYQEVGHLR                             G  L       A+  NF
Sbjct: 97  IILQFGYQEVGHLRAIKTTVKGFPRPLLDLSSASFAKVMDKAFGRQLKPHFDPYANGLNF 156

Query: 124 LPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRAD 183
           L ++      Y+VPYVGL GY G+NP L   +AK+L AGLL  ESGQD ++R  L+ RA 
Sbjct: 157 LLAS------YLVPYVGLTGYVGANPRLESAVAKKLVAGLLGVESGQDAVIRALLYQRAA 210

Query: 184 QIVKPYNYTVARM------------------KGFLSLRSLELNRRLVAMSRPWAFNSFSY 225
           + V+PY  TVA                    +G +  ++     ++         +S +Y
Sbjct: 211 EKVEPYGVTVAEFTDRISDLRNKLGHAGIKDEGTVVPKNEGAEGKITGNVLAGDQDSLAY 270

Query: 226 PRSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKT 260
           PR+P+EILRI YG GNEH PG F+P+G      K+
Sbjct: 271 PRTPQEILRIVYGGGNEHAPGGFYPKGADGHIAKS 305

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356529093|ref|XP_003533131.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 107/270 (39%), Positives = 135/270 (50%), Gaps = 63/270 (23%)

Query: 47  DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLK-----------ANLDNLTRAIITE 95
           DVD L+F  +LE+LEAE FL G LGYGLD VAP L            A LD+L R II +
Sbjct: 44  DVDLLEFPLNLEYLEAEFFLFGSLGYGLDVVAPNLTEGGPPPIGARLARLDSLVRDIILQ 103

Query: 96  FGYQEVGHLRC----------------------------GHALLQCHKVCASSRNFLPSA 127
           FG+QEVGHLR                             G  L+      A+S N+L ++
Sbjct: 104 FGFQEVGHLRAIKSTVRGFPRPLLDLSTASFAKVMNSAFGRPLVPPFDPYANSINYLLAS 163

Query: 128 PIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVK 187
                 Y++PYVGL GY G+NP L    +KRL AGLL  ESGQD ++R  L+      V+
Sbjct: 164 ------YVIPYVGLTGYVGANPLLQNATSKRLVAGLLGVESGQDAVIRALLYEYRTLSVQ 217

Query: 188 PYNYTVARMKGFLSL------------RSLELNRRLVAMSRPWAF------NSFSYPRSP 229
           PYN TVA     +S+              L + R   A  R          +S SYPR+P
Sbjct: 218 PYNVTVAEFTNRISMLRNNLGGSGLKDEGLVVPREQGAEGRVTGNILVGDKDSLSYPRTP 277

Query: 230 EEILRISYGTGNEHVPGRFFPQGGKWKNCK 259
            EILRI YG G+EHVPG F+P+G   +  K
Sbjct: 278 REILRIIYGGGDEHVPGGFYPKGASGRIAK 307

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582162|ref|XP_002531875.1| conserved hypothetical protein [Ricinus communis] gi|223528483|gb|EEF30512.1| conserved hypothetical protein [Ricinus communis]

 Score =  160 bits (404), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 106/270 (39%), Positives = 130/270 (48%), Gaps = 51/270 (18%)

Query: 42  PLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYL-----------KANLDNLTR 90
           P+   D D LQFA +LE LEAE F  G LG GL  + P L           KANLD +TR
Sbjct: 31  PIKATDQDRLQFALNLEFLEAEFFCYGSLGRGLHSIDPALADGGPPPIGAQKANLDPVTR 90

Query: 91  AIITEFGYQEVGHLRCGHALL----------------QCHKVCASSRNFLPSAPIMTRY- 133
            II EF YQEVGHLR     +                +   V    +   P  P M    
Sbjct: 91  QIIEEFCYQEVGHLRAIKTTVGGLRMPLYDFRRTSFAKTFDVAVGRKLDPPFNPYMNTVN 150

Query: 134 -----YMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKP 188
                Y++PYVGL GY G+ P L  Y  K LAA LL  E+GQD ++R  L+ +AD+ VKP
Sbjct: 151 YLIASYVIPYVGLVGYVGTIPELANYTTKALAASLLGVEAGQDAVIRALLYEKADEKVKP 210

Query: 189 YNYTVARM------------------KGFLSLRSLELNRRLVAMSRPWAFNSFSYPRSPE 230
           YN TVA                    +G +  R L   +R  +       NS SY R+P 
Sbjct: 211 YNITVAEFTSRISNFRNELGMCGIKDEGIIVPRELGAEKRTQSNVLSADANSLSYARTPP 270

Query: 231 EILRISYGTGNEHVPGRFFPQGGKWKNCKT 260
           EILRI YGTG+E  PG F PQGG  +  K+
Sbjct: 271 EILRILYGTGDESKPGGFLPQGGNGRIAKS 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852412|ref|XP_002894087.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata] gi|297339929|gb|EFH70346.1| hypothetical protein ARALYDRAFT_891606 [Arabidopsis lyrata subsp. lyrata]

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/312 (38%), Positives = 154/312 (49%), Gaps = 57/312 (18%)

Query: 1   MATSKLEVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRD-DVDNLQFAQSLEH 59
           MA +K    L +S +I + +     F +      + P P    C D D   L+F  +LE+
Sbjct: 1   MAITKERRSLLVSMVIVVFF-----FNFHHLQVMSCPDPATTNCTDQDRKLLEFPLNLEY 55

Query: 60  LEAELFLGGGLGYGLDKVAPYL-----------KANLDNLTRAIITEFGYQEVGHLRC-- 106
           LEAE FL G LG+GLDKVAP L           KANLD LTR II +F +QEVGHLR   
Sbjct: 56  LEAEFFLFGALGFGLDKVAPNLTMGGPSPIGAQKANLDPLTRDIILQFAWQEVGHLRAIK 115

Query: 107 ----GHALLQCH-------KVC--ASSRNFLPS-APIMTRY------YMVPYVGLNGYTG 146
               G A  Q         KV   A    F+P   P    Y      Y+VPYVGL GY G
Sbjct: 116 KTVKGFARPQLDLSKKAFAKVMDKAFGVKFVPPFNPYANSYNYLIASYLVPYVGLTGYVG 175

Query: 147 SNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLE 206
           +NP L    +++L AGLL  ESGQD ++R  L+ RA  IV PY  TVA     +S    +
Sbjct: 176 ANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTVAAFTDKISDLRNK 235

Query: 207 LNRRLV----------------AMSRPWAFNSF--SYPRSPEEILRISYGTGNEHVPGRF 248
           L +  V                 +      N F  S+ R+PEEILRI YG+GNE VPG F
Sbjct: 236 LGKAGVKDEGLVVPKFMGAEGQVIGNVLVGNEFSLSFDRTPEEILRIVYGSGNESVPGGF 295

Query: 249 FPQGGKWKNCKT 260
           +P+G   +  K+
Sbjct: 296 YPKGADGEIAKS 307

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555981|ref|XP_003546306.1| PREDICTED: desiccation-related protein PCC13-62-like [Glycine max]

 Score =  159 bits (402), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 107/274 (39%), Positives = 137/274 (50%), Gaps = 63/274 (22%)

Query: 44  CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLK-----------ANLDNLTRAI 92
              DVD L+F  +LE+LEAE FL G LG+GLD VAP L            A L+NL R I
Sbjct: 41  SESDVDLLEFPLNLEYLEAEFFLFGSLGHGLDVVAPNLSEGGPPPIGARLARLENLIRDI 100

Query: 93  ITEFGYQEVGHLRC----------------------------GHALLQCHKVCASSRNFL 124
           I +FG QEVGHLR                             G  L+      A+S N+L
Sbjct: 101 ILQFGLQEVGHLRAIKSTVRGFPRPLLDLSTASFAKVMNSAFGRPLVPPFDPYANSINYL 160

Query: 125 PSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQ 184
            ++      Y++PYVGL GY G+NP L    +KRL AGLL  ESGQD ++R  L+ R   
Sbjct: 161 LAS------YVIPYVGLTGYVGANPLLQNATSKRLVAGLLGVESGQDAVIRTLLYERQAS 214

Query: 185 IVKPYNYTVARMKGFLSLRSLEL------NRRLVAMSRPWA------------FNSFSYP 226
           +V+PY  TVA     +S+   +L      +  LV      A             +S SYP
Sbjct: 215 LVQPYKVTVAEFTDRISMLRNKLGNAGVKDEGLVVPRVQGAEGSVTDNILAGDKDSLSYP 274

Query: 227 RSPEEILRISYGTGNEHVPGRFFPQGGKWKNCKT 260
           R+PEEILRI YG G+EHVPG F+P G   +  K+
Sbjct: 275 RTPEEILRIIYGGGDEHVPGGFYPNGACGRIAKS 308

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556470|ref|XP_002519269.1| conserved hypothetical protein [Ricinus communis] gi|223541584|gb|EEF43133.1| conserved hypothetical protein [Ricinus communis]

 Score =  156 bits (395), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 115/311 (36%), Positives = 147/311 (47%), Gaps = 70/311 (22%)

Query: 7   EVLLTISFLICISYCLADQFKYPRACWPTSPLPEPPLCRDDVDNLQFAQSLEHLEAELFL 66
           ++ L I  L+ ISY       YP        L +  +   DVD L+F  +LE+LEAE FL
Sbjct: 8   DIALLILLLVPISYS------YPLNIL-LDVLAKSSIPDGDVDLLEFPINLEYLEAEFFL 60

Query: 67  GGGLGYGLDKVAPYL-----------KANLDNLTRAIITEFGYQEVGHLRC--------- 106
            G LG GLD  AP L           KA LD  TR +I +F +QEVGHLR          
Sbjct: 61  YGSLGDGLDVFAPNLTSGGPPPIGATKAKLDPFTRDVIRQFAWQEVGHLRAIKNVVKGFP 120

Query: 107 -------------------GHALLQCHKVCASSRNFLPSAPIMTRYYMVPYVGLNGYTGS 147
                              G  L       A S NFL ++      Y+VPYVGL GY G+
Sbjct: 121 RPLLDLRAETFAKVIDDAFGQPLFPPFDPYACSLNFLIAS------YIVPYVGLTGYVGA 174

Query: 148 NPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTVARMKGFLSLRSLEL 207
           NP L   ++K+L AGLL+ ESGQD ++R  L+ RA + V PY  TVA     +S    +L
Sbjct: 175 NPKLSASISKQLVAGLLAVESGQDAVIRTLLYERAIEKVYPYKITVAEFTDRISELRNKL 234

Query: 208 NRR-------LVAMSRPWAFN-----------SFSYPRSPEEILRISYGTGNEHVPGRFF 249
                     +VA  R                S  YPR+PEEILRI YG G+EHVPG F+
Sbjct: 235 GNNGNKDEGIIVAKERGAEGQVRGNVLAGDEYSVGYPRTPEEILRIVYGGGDEHVPGGFY 294

Query: 250 PQGGKWKNCKT 260
           P+G   +  K+
Sbjct: 295 PKGADGRIAKS 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357448841|ref|XP_003594696.1| Desiccation-related protein PCC13-62 [Medicago truncatula] gi|124361118|gb|ABN09090.1| Desiccation-related protein PCC13-62 precursor, putative [Medicago truncatula] gi|355483744|gb|AES64947.1| Desiccation-related protein PCC13-62 [Medicago truncatula]

 Score =  156 bits (395), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 135/270 (50%), Gaps = 57/270 (21%)

Query: 41  PPLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLK-----------ANLDNLT 89
           PP    DVD L+F  +LE+LEAE FL G LG+GLD VAP L            A L +L 
Sbjct: 33  PPKNYSDVDLLEFPLNLEYLEAEFFLFGSLGHGLDVVAPELAEGGPPPIGAKVARLGDLV 92

Query: 90  RAIITEFGYQEVGHLRC----------------------------GHALLQCHKVCASSR 121
           R +I +FG QE+GHLR                             GH L       A+  
Sbjct: 93  RDVILQFGVQEIGHLRAIKSTVRGFPRPLLDLSKSSFAKIMDSAFGHPLHPPFDPYANDI 152

Query: 122 NFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGR 181
           N+L ++      Y++PYVGL GY G+NP L    +K+L AGLL  E+GQD ++R  L+ R
Sbjct: 153 NYLIAS------YVIPYVGLTGYVGANPLLRNATSKKLVAGLLGVEAGQDAVIRTLLYER 206

Query: 182 ADQIVKPYNYTVARMKGFLSLRSLELNRRLV-----AMSRPWA-------FNSFSYPRSP 229
               V PY  TVA     +S    +L    V       + P++        NS SYPR+P
Sbjct: 207 RAWKVHPYGVTVAEFTNRISTLRNKLGNEGVKDEGLGFTSPFSGNILSADNNSLSYPRTP 266

Query: 230 EEILRISYGTGNEHVPGRFFPQGGKWKNCK 259
           +EILRI YG+GNE VPG F+P+G   +  +
Sbjct: 267 QEILRIIYGSGNESVPGGFYPKGADGRIAR 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	276
TAIR|locus:2081645	317	AT3G62730 "AT3G62730" [Arabido	0.264	0.230	0.437	1.8e-23
TAIR|locus:2202593	315	AT1G47980 "AT1G47980" [Arabido	0.221	0.193	0.557	1.9e-20

TAIR|locus:2081645 AT3G62730 "AT3G62730" [Arabidopsis thaliana (taxid:3702)]

 Score = 152 (58.6 bits), Expect = 1.8e-23, Sum P(3) = 1.8e-23
 Identities = 35/80 (43%), Positives = 50/80 (62%)

Query:   118 ASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY 177
             A+S N+L     +  YY +PYVGL GY G+ P+L  +  K+L AGLL  ESGQD ++R  
Sbjct:   144 ANSLNYL-----LASYY-IPYVGLTGYVGTIPYLVYFNIKKLVAGLLGVESGQDAVIRTL 197

Query:   178 LFGRADQIVKPYN-YTVARM 196
             L+ R ++ V+ Y   TVA +
Sbjct:   198 LYERQNEKVEEYGGVTVAEL 217

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2202593 AT1G47980 "AT1G47980" [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
 Identities = 34/61 (55%), Positives = 42/61 (68%)

Query:   134 YMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKPYNYTV 193
             Y+VPYVGL GY G+NP L    +++L AGLL  ESGQD ++R  L+ RA  IV PY  TV
Sbjct:   163 YLVPYVGLTGYVGANPKLQCPASRKLVAGLLGVESGQDAVIRGMLYARAAHIVYPYGVTV 222

Query:   194 A 194
             A
Sbjct:   223 A 223

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	276
pfam13668	137	pfam13668, Ferritin_2, Ferritin-like domain	3e-23

>gnl|CDD|222304 pfam13668, Ferritin_2, Ferritin-like domain

 Score = 91.9 bits (229), Expect = 3e-23
 Identities = 47/145 (32%), Positives = 63/145 (43%), Gaps = 20/145 (13%)

Query: 46  DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLR 105
            DVD L FA +LE+LEA  +L    G+GLD  A   KA LD   RA+  E    EV H+R
Sbjct: 1   SDVDILNFALTLEYLEAAFYLQALAGFGLDDFA---KAGLDAAVRALAEEIADHEVAHVR 57

Query: 106 CGHALLQCHKV--C---------ASSRNFLPSAPIMTRYYMVPYVGLNGYTGSNPFLCGY 154
              A L    V                +FL  A      Y++  VG++ Y G+ P L   
Sbjct: 58  FLKAALGGAPVPRPTFDFPFDPFTDRLSFLALA------YVLEDVGVSAYLGAAPLLSNK 111

Query: 155 LAKRLAAGLLSPESGQDRIVREYLF 179
                AA +L  E+    ++R  L 
Sbjct: 112 DYLAAAASILGVEARHAAVIRTLLG 136

This family contains ferritins and other ferritin-like proteins such as members of the DPS family and bacterioferritins. Length = 137

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	276
PF13668	137	Ferritin_2: Ferritin-like domain	99.96
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	98.5
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	98.5
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	97.55
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	97.33
PRK13456	186	DNA protection protein DPS; Provisional	96.44
cd01048	135	Ferritin_like_AB2 Uncharacterized family of ferrit	96.43
cd01052	148	DPSL DPS-like protein, ferritin-like diiron-bindin	96.16
cd00907	153	Bacterioferritin Bacterioferritin, ferritin-like d	96.13
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.93
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	95.82
COG1633	176	Uncharacterized conserved protein [Function unknow	95.57
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	94.33
PF13668	137	Ferritin_2: Ferritin-like domain	94.23
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	92.86
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	92.75
PF00210	142	Ferritin: Ferritin-like domain; InterPro: IPR00833	91.62
PRK10635	158	bacterioferritin; Provisional	90.6
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	88.95
PF02915	137	Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Ru	88.59
TIGR02284	139	conserved hypothetical protein. Members of this pr	87.0
TIGR00754	157	bfr bacterioferritin. Bacterioferritin is a homomu	85.02
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	80.79
cd01041	134	Rubrerythrin Rubrerythrin, ferritin-like diiron-bi	80.43

>PF13668 Ferritin_2: Ferritin-like domain

Probab=99.96  E-value=4.6e-30  Score=211.71  Aligned_cols=128  Identities=29%  Similarity=0.384  Sum_probs=114.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh-cCCc---CCC
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH-KVCA---SSR  121 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL-g~~P---~~~  121 (276)
                      +|++||||||+|||||.+||.+++.|.+++. .   +..+++.+++++++|+.||..|+++   |++.+ |+.|   +..
T Consensus         1 ~D~~iL~~Al~lE~l~~~fY~~~~~~~~~~~-~---~~~~~~~~~~~~~~i~~~E~~H~~~---l~~~l~g~~~~~~~~~   73 (137)
T PF13668_consen    1 GDLDILNFALNLEYLEADFYQQAAEGFTLQD-N---KAALDPEVRDLFQEIADQEQGHVDF---LQAALEGGRPVPPPAY   73 (137)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHhcCChhh-h---hccCCHHHHHHHHHHHHHHHHHHHH---HHHHhcCCCCCCCCcc
Confidence            5999999999999999999999998887765 2   4678999999999999999999999   99999 7554   444


Q ss_pred             CC---CCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          122 NF---LPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       122 ~F---~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      +|   +..|+  ||.+|+.||++|+++|+|++++++|++++.++++|++||+||+++||++|++
T Consensus        74 ~~~~~~~~~~~~~L~~A~~~E~~~~~~Y~g~~~~~~~~~~~~~~~~i~~~Ea~H~~~ir~ll~~  137 (137)
T PF13668_consen   74 DFPFDPFTDDASFLRLAYTLEDVGVSAYKGAAPQIEDPELKALAASIAGVEARHAAWIRNLLGQ  137 (137)
T ss_pred             ccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            55   22233  9999999999999999999999999999999999999999999999999985

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=98.50  E-value=9.9e-07  Score=70.15  Aligned_cols=117  Identities=17%  Similarity=0.121  Sum_probs=94.6

Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CCcCC--CCC-
Q 044495           49 DNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VCASS--RNF-  123 (276)
Q Consensus        49 diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~P~~--~~F-  123 (276)
                      ++||+|+.+|..-..||.+.+.            ..-++.++.+++.++.+|..|.+.+.++...++  +.|..  ..+ 
T Consensus         1 ~~l~~a~~~E~~~~~~Y~~~a~------------~~~~~~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~   68 (139)
T cd01045           1 EILALAIKMEEEAAEFYLELAE------------KAKDPELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYK   68 (139)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHh------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHH
Confidence            5899999999999999998751            223568999999999999999999555545554  34510  000 


Q ss_pred             --------------CCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495          124 --------------LPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY  177 (276)
Q Consensus       124 --------------~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l  177 (276)
                                    ...|+  .|..+.-+|..++.-|.-.+..+.++....+...|...|.+|...+|.+
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~~~~~~d~~~~~~~~~l~~~E~~H~~~l~~~  138 (139)
T cd01045          69 EEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEELAEKAEDPEVKKLFEELAEEERGHLRLLEEL  138 (139)
T ss_pred             HHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence                          01222  8899999999999999999999999999999999999999999999975

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=98.50  E-value=1.4e-06  Score=66.09  Aligned_cols=117  Identities=15%  Similarity=0.011  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC-CC-----C-
Q 044495           50 NLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS-SR-----N-  122 (276)
Q Consensus        50 iLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~-~~-----~-  122 (276)
                      +||-++..|+-...+|.....           .. -++.++.++.+++.+|..|.+.+..+-..+|+.|. ..     . 
T Consensus         2 ~L~~~~~~E~~a~~~y~~~~~-----------~~-~~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~~~~~   69 (130)
T cd00657           2 LLNDALAGEYAAIIAYGQLAA-----------RA-PDPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHLLAAY   69 (130)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH-----------Hc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhc
Confidence            689999999999999998652           11 26889999999999999999994444444555551 11     1 


Q ss_pred             ---CCCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          123 ---FLPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       123 ---F~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                         ....|+  .+..+...|..+...|........+++.......|...|.+|...++.++
T Consensus        70 ~~~~~~~~~~~~l~~~~~~E~~~~~~y~~~~~~~~d~~~~~~~~~~~~~E~~H~~~~~~~~  130 (130)
T cd00657          70 ALPKTSDDPAEALRAALEVEARAIAAYRELIEQADDPELRRLLERILADEQRHAAWFRKLL  130 (130)
T ss_pred             ccCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence               113344  78888999999999999999888899999999999999999999998753

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=97.55  E-value=0.00039  Score=55.30  Aligned_cols=115  Identities=13%  Similarity=0.098  Sum_probs=92.3

Q ss_pred             hHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcC-----Cc----
Q 044495           49 DNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKV-----CA----  118 (276)
Q Consensus        49 diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~-----~P----  118 (276)
                      ++|+.|+..|.-...||...+.           .+.-+ |.++.++..++.+|..|..+   +.+.+..     .|    
T Consensus         1 e~L~~A~~~E~~~~~~Y~~~a~-----------~~~~~~p~~~~~f~~lA~~E~~H~~~---~~~l~~~~~~~~~~~~~~   66 (137)
T PF02915_consen    1 EILEMAIKMELEAAKFYRELAE-----------KAKDEGPELKELFRRLAEEEQEHAKF---LEKLLRKLGPGEEPPFLE   66 (137)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-----------HHHHTTHHHHHHHHHHHHHHHHHHHH---HHHHHCHCSTTHHTHCHC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH-----------HhhhcccHHHHHHHHHHHHHHHHHHH---HHHHHHhhccccCcchhh
Confidence            6899999999999999998641           11112 88999999999999999999   6666551     12    


Q ss_pred             --CCCCCCC-------chH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495          119 --SSRNFLP-------SAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY  177 (276)
Q Consensus       119 --~~~~F~~-------~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l  177 (276)
                        ....|..       .++  .+..+...|.-++.-|.-.+..+.++......-.|...|.+|...++.+
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~~a~~~~~~~~~~~~~~l~~~E~~H~~~l~~l  136 (137)
T PF02915_consen   67 EKVEYSFFPKLEEETDENLEEALEMAIKEEKDAYEFYAELARKAPDPEIRKLFEELAKEEKEHEDLLEKL  136 (137)
T ss_dssp             CCCCHCCCCTCCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1111221       123  8888899999999999999999999999999999999999999999865

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=97.33  E-value=0.0022  Score=53.95  Aligned_cols=121  Identities=13%  Similarity=0.028  Sum_probs=90.6

Q ss_pred             hhHHHHHHH---HHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-----C
Q 044495           48 VDNLQFAQS---LEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-----S  119 (276)
Q Consensus        48 ~diLNfALn---LEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-----~  119 (276)
                      ...|+=.+.   -|+--..+|.+-...          ...-++..++++.+++.+|..|.+.+..+...||+.|     .
T Consensus        15 ~~~~~~~~~g~~~E~~ai~~Y~y~~~~----------~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~   84 (154)
T cd07908          15 AELLLDDYAGTNSELTAISQYIYQHLI----------SEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSS   84 (154)
T ss_pred             HHHHHHHhCCcchHHHHHHHHHHHHHH----------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhc
Confidence            344444444   566666666654211          1123689999999999999999999666666677777     1


Q ss_pred             CCCCC---------CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          120 SRNFL---------PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       120 ~~~F~---------~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                      ...|.         ..|+  .|..+..+|.-++.-|..++..+.|++.+...-.|+.=|-+|..++..+|
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~~d~~~r~ll~~I~~eE~~H~~~L~~~l  154 (154)
T cd07908          85 SDKFTYWTGKYVNYGESIKEMLKLDIASEKAAIAKYKRQAETIKDPYIRALLNRIILDEKLHIKILEELL  154 (154)
T ss_pred             cccCCcCCccccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            11121         2233  88999999999999999999999999999999999999999999987654

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>PRK13456 DNA protection protein DPS; Provisional

Probab=96.44  E-value=0.023  Score=51.01  Aligned_cols=126  Identities=15%  Similarity=0.038  Sum_probs=93.2

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-------
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-------  118 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-------  118 (276)
                      =++.||=||.-||+=.=.|.....          ...++ .+.+...+.+-+.+|..|...|..=-..|||.|       
T Consensus        21 li~lLn~AlA~E~~a~~~Y~~~a~----------~~~G~~~e~V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~   90 (186)
T PRK13456         21 LVELLVKNAAAEFTTYYYYTILRA----------HLIGLEGEGLKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREF   90 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------HHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHH
Confidence            468899999999998777776431          01233 467888999999999999999543335588887       


Q ss_pred             ---CCCCCC--Cc---hH--HHHHHhhcccchhhhhcccccccC--CHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          119 ---SSRNFL--PS---AP--IMTRYYMVPYVGLNGYTGSNPFLC--GYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       119 ---~~~~F~--~~---dp--fL~~A~~lE~vGvsAY~Gaap~l~--~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                         ++++|.  +.   |.  +|...-.=|..-+..|.=....+.  |+.-...+-.||+-|-.|...+..+|..+.
T Consensus        91 ~~ls~~~~~~~p~d~tdv~~mL~~~L~AEr~AI~~Y~eii~~~~~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~  166 (186)
T PRK13456         91 HDISACPDAYLPENPTDPKEILKVLLEAERCAIRTYTEICDMTAGKDPRTYDLALAILQEEIEHEAWFSELLGGGP  166 (186)
T ss_pred             hhhhcCccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence               244553  22   33  777777777888888875555443  566788999999999999999999998654

>cd01048 Ferritin_like_AB2 Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=96.43  E-value=0.01  Score=49.77  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=82.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CC--c----C
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VC--A----S  119 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~--P----~  119 (276)
                      .++|.||+..|++.-+||.....-+           +    .+.++..|+..|..|...   |+..+.  +.  |    .
T Consensus         2 ~~~L~~Ale~Ek~a~~~Y~~~~~k~-----------~----~~~~F~~la~~E~~H~~~---l~~L~~~~~~~~p~~~~~   63 (135)
T cd01048           2 IAALLYALEEEKLARDVYLALYEKF-----------G----GLRPFSNIAESEQRHMDA---LKTLLERYGLPDPVDPFS   63 (135)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-----------c----CcchHHHHHHHHHHHHHH---HHHHHHHcCCCCCCCccc
Confidence            5789999999999999999875221           1    467899999999999999   776665  33  3    2


Q ss_pred             CCCCC------------CchH-HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhH
Q 044495          120 SRNFL------------PSAP-IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDR  172 (276)
Q Consensus       120 ~~~F~------------~~dp-fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa  172 (276)
                      ...|.            ..+. -+..+..+|...+.=|.-++...+|++++..--.+..-|-.|-.
T Consensus        64 ~~~f~~~~~~~l~~~~~~s~~~al~~g~~~E~~~i~~ye~~~~~~~d~d~k~v~~~L~~~e~~H~~  129 (135)
T cd01048          64 GGVFTNPQYNQLVEQGPKSLQDALEVGVLIEELDIADYDRLLERTQNPDIRDVFENLQAASRNHHL  129 (135)
T ss_pred             cccccchhHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            23332            1122 77788889999999999999999999998888888888877743

Ferritin-like domain found in archaea and bacteria, subgroup 2 (Ferritin_like_AB2). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. The conserved residues of a diiron center are present within the putative active site.

>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain

Probab=96.16  E-value=0.06  Score=44.38  Aligned_cols=121  Identities=13%  Similarity=0.020  Sum_probs=89.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCC----
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSR----  121 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~----  121 (276)
                      ++.||-+|+.|+--...|..-..         . ..+. -..+...+.+++.+|..|+..+.+.-..|||.| .+.    
T Consensus         8 ~~~Ln~~la~e~~~~~~y~~~~~---------~-~~g~~f~~l~~~~~~~~~ee~~Had~laEri~~lGg~p~~~~~~~~   77 (148)
T cd01052           8 IELLNKAFADEWLAYYYYTILAK---------H-VKGPEGEGIKEELEEAAEEELNHAELLAERIYELGGTPPRDPKDWY   77 (148)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH---------H-HcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHH
Confidence            46799999999998777776321         0 1111 246888999999999999999777777899888 111    


Q ss_pred             -----CC-----CCchH--HHHHHhhcccchhhhhccccccc--CCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          122 -----NF-----LPSAP--IMTRYYMVPYVGLNGYTGSNPFL--CGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       122 -----~F-----~~~dp--fL~~A~~lE~vGvsAY~Gaap~l--~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                           .+     ...|.  .+.....-|...+..|.......  .|.......-.|+.-|-.|..+++++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~l~~~~~~e~~~i~~~~~~~~~a~~~D~~t~~ll~~~l~de~~h~~~~~~~~  148 (148)
T cd01052          78 EISGCKCGYLPPDPPDVKGILKVNLKAERCAIKVYKELCDMTHGKDPVTYDLALAILNEEIEHEEDLEELL  148 (148)
T ss_pred             HHhcccccCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence                 11     12232  77788888888889998777655  566677888899999999999999875

DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical

>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain

Probab=96.13  E-value=0.084  Score=43.75  Aligned_cols=124  Identities=10%  Similarity=-0.008  Sum_probs=90.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccC-CHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CCCCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANL-DNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SSRNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l-~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~~~F  123 (276)
                      =++.||-+++.||--...|.+...-          ..+. -+.+...+.+++.+|..|..-+.+.-..+||.|  +....
T Consensus         6 ~~~~Ln~~l~~E~~a~~~Y~~~a~~----------~~~~~~~~~~~~f~~~a~ee~~Ha~~lae~i~~lGg~p~~~~~~~   75 (153)
T cd00907           6 VIEALNKALTGELTAINQYFLHARM----------LEDWGLEKLAERFRKESIEEMKHADKLIERILFLEGLPNLQRLGK   75 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------HHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcCCC
Confidence            3578999999999998888853210          0111 256788999999999999999666666678887  11111


Q ss_pred             C--CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L--PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~--~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      .  ..|+  .+..+.-.|.--+..|.-...   -..|+......-.|+..|-.|..++|.++..
T Consensus        76 ~~~~~~~~~~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~~~~~e~~h~~~l~~~l~~  139 (153)
T cd00907          76 LRIGEDVPEMLENDLALEYEAIAALNEAIALCEEVGDYVSRDLLEEILEDEEEHIDWLETQLDL  139 (153)
T ss_pred             CCcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1  1122  667777777777888887644   3578888899999999999999999988764

Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.93  E-value=0.043  Score=59.73  Aligned_cols=126  Identities=11%  Similarity=0.101  Sum_probs=101.3

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC-Cc-CC
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKV-CA-SS  120 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~-~P-~~  120 (276)
                      ...++.+||.+|+.+|-=--+||.+.+            ...-++.+++++.++|..|..|.+.   |++.+.. .| ..
T Consensus       857 ~~~~~~eil~~Ai~mE~~g~~FY~~~A------------~~a~~~~~K~lF~~LA~eE~~H~~~---l~~~~~~~~~~~~  921 (1006)
T PRK12775        857 EDAAALEAIRTAFEIELGGMAFYARAA------------KETSDPVLKELFLKFAGMEQEHMAT---LARRYHAAAPSPT  921 (1006)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHhhccCCcc
Confidence            346789999999999999999999975            1234789999999999999999999   6666552 23 11


Q ss_pred             CCC--------C-----CchH--HHHHHhhcccchhhhhcccccccCCHH-HHHHHHhhhhhhhhhhHHHHHHhhhccc
Q 044495          121 RNF--------L-----PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYL-AKRLAAGLLSPESGQDRIVREYLFGRAD  183 (276)
Q Consensus       121 ~~F--------~-----~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~-~l~aAa~IlsVEArHaa~IR~lL~~~~~  183 (276)
                      ..|        .     ..++  .|..|.-+|.=.+.=|..++...++++ .+++...|..-|..|-..+..++.+...
T Consensus       922 ~~~~~~~~~~~~~~~~~~~~~~~al~lAm~~Ekdai~fY~~la~~~~d~e~~k~l~~~LA~EEk~Hl~~L~~~~d~~~~ 1000 (1006)
T PRK12775        922 EGFKIERAAIMAGVKGRPDDPGNLFRIAIEFERRAVKFFKERVAETPDGSVERQLYKELAAEEREHVALLTTEFERWKQ 1000 (1006)
T ss_pred             cccccchhhhhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            111        1     1223  888999999999999999999999986 6899999999999999999988776553

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=95.82  E-value=0.069  Score=43.69  Aligned_cols=112  Identities=15%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCCC-----
Q 044495           50 NLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFL-----  124 (276)
Q Consensus        50 iLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F~-----  124 (276)
                      .+|=.+.-|.-...||.+.+            ...-++..+.++.++|.+|..|..++..+...+|+.|....+.     
T Consensus         2 ~~~~~~~~E~~~~~~Y~~la------------~~~~~~~~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~~~~~~~~~~~   69 (125)
T cd01044           2 RLRKFQKDEITEAAIYRKLA------------KREKDPENREILLKLAEDERRHAEFWKKFLGKRGVPPPRPKLKIFFYK   69 (125)
T ss_pred             HHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCccHHHHHHH
Confidence            46678899999999999864            1234788999999999999999999333333344443211111     


Q ss_pred             ----CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495          125 ----PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLF  179 (276)
Q Consensus       125 ----~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~  179 (276)
                          .+++  .+..+.-.|.-+..-|......      ......|..-|-.|-..++.++.
T Consensus        70 ~l~~~~g~~~~l~~~~~~E~~ai~~Y~~~~~~------~~~~~~Ii~dE~~H~~~L~~~~~  124 (125)
T cd01044          70 LLARIFGPTFVLKLLERGEERAIEKYDRLLEE------RPELKEIIADELEHEEVLIALLD  124 (125)
T ss_pred             HHHHHHhHHHHHHHHHHhHHhhHhhHHhhhhh------hHHHHHHHHHHHHHHHHHHHhhh
Confidence                1111  3344445666677777766544      44567799999999999887753

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>COG1633 Uncharacterized conserved protein [Function unknown]

Probab=95.57  E-value=0.14  Score=45.27  Aligned_cols=123  Identities=15%  Similarity=0.011  Sum_probs=93.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc---C--C
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK---V--C  117 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg---~--~  117 (276)
                      ...+-.++|++|+..|.=.-.||.+.+            +-.-++.++.++.+|+.+|..|.+-   +++.+.   .  +
T Consensus        21 ~~~~~~e~L~~Ai~~E~eA~~fY~~la------------e~~~~~~~rk~~~~la~eE~~H~~~---f~~l~~~~~~~~~   85 (176)
T COG1633          21 KELSIEELLAIAIRGELEAIKFYEELA------------ERIEDEEIRKLFEDLADEEMRHLRK---FEKLLEKLTPKEV   85 (176)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCHhHHHHHHHHHHHHHHHHHH---HHHHHHHhcCCcc
Confidence            345789999999999999999999864            2335679999999999999999999   665544   2  1


Q ss_pred             cC--------CCCCC-Cch---------H--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495          118 AS--------SRNFL-PSA---------P--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREY  177 (276)
Q Consensus       118 P~--------~~~F~-~~d---------p--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~l  177 (276)
                      +.        ...+. ..+         .  -+..|.--|--.+--|...+-.+.|.+...+.-.|...|-+|...++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~a~~~E~~t~~~Y~~~~~~~~~~~~~~~~~~~a~~E~~H~~~l~~~  165 (176)
T COG1633          86 SSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELLDELVNEEAKKLFKTIADDEKGHASGLLSL  165 (176)
T ss_pred             chhhhhcchhhhhccccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            21        00111 111         1  3444555577777889999999999999999999999999999999987


Q ss_pred             hhh
Q 044495          178 LFG  180 (276)
Q Consensus       178 L~~  180 (276)
                      +..
T Consensus       166 ~~~  168 (176)
T COG1633         166 YNR  168 (176)
T ss_pred             HHH
Confidence            654

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=94.33  E-value=0.26  Score=42.63  Aligned_cols=96  Identities=14%  Similarity=0.039  Sum_probs=78.4

Q ss_pred             CCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC----CcCCCCCC--CchH--HHHHHhhcccchhhhhcccccccCCHHH
Q 044495           85 LDNLTRAIITEFGYQEVGHLRCGHALLQCHKV----CASSRNFL--PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLA  156 (276)
Q Consensus        85 l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~----~P~~~~F~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~  156 (276)
                      -++.+++.+.+|+.+|..|++.+...-..||+    .|-++.+-  ..|+  .|......|.-...-|.=....++|+.+
T Consensus        51 ~~~~~~d~l~~ia~eEm~H~e~la~~I~~Lg~~~~g~pw~~~yv~~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~~Dp~v  130 (156)
T cd01051          51 EDPKYRDLLLDIGTEELSHLEMVATLIAMLLKDSQGVPWTAAYIQSSGNLVADLRSNIAAESRARLTYERLYEMTDDPGV  130 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCCcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence            46889999999999999999996666666774    44222221  2344  7778888999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          157 KRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       157 l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      +....-|+.=|-.|.-.++.+|.+
T Consensus       131 ~~~l~~I~~rE~~H~~~f~~~l~~  154 (156)
T cd01051         131 KDTLSFLLVREIVHQNAFGKALES  154 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999988753

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>PF13668 Ferritin_2: Ferritin-like domain

Probab=94.23  E-value=0.15  Score=41.96  Aligned_cols=56  Identities=20%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK  115 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg  115 (276)
                      .+|.++|++|+.+|..=..+|..++            ...-++..+..+..|+..|..|...   ||..|+
T Consensus        81 ~~~~~~L~~A~~~E~~~~~~Y~g~~------------~~~~~~~~~~~~~~i~~~Ea~H~~~---ir~ll~  136 (137)
T PF13668_consen   81 TDDASFLRLAYTLEDVGVSAYKGAA------------PQIEDPELKALAASIAGVEARHAAW---IRNLLG  136 (137)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHhc
Confidence            4799999999999999999998764            1223788999999999999999999   998875

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=92.86  E-value=0.33  Score=40.82  Aligned_cols=56  Identities=14%  Similarity=0.111  Sum_probs=47.2

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495           44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH  114 (276)
Q Consensus        44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL  114 (276)
                      ..+..++|.+++..|.=--+||.+.+            ....++.+++++.+|..+|..|.+.   |++.|
T Consensus        99 ~~~~~~~L~~~~~~E~~ai~~Y~~~~------------~~~~d~~~r~ll~~I~~eE~~H~~~---L~~~l  154 (154)
T cd07908          99 GESIKEMLKLDIASEKAAIAKYKRQA------------ETIKDPYIRALLNRIILDEKLHIKI---LEELL  154 (154)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHhhC
Confidence            34678899999999999999999875            1235789999999999999999999   76543

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=92.75  E-value=0.36  Score=38.06  Aligned_cols=55  Identities=24%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHH
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQ  112 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~  112 (276)
                      ...++.++|..|+..|---.+||...+.            ...++.++.++.+|..+|..|...   |+.
T Consensus        83 ~~~~~~~~l~~a~~~E~~~~~~Y~~~~~------------~~~d~~~~~~~~~l~~~E~~H~~~---l~~  137 (139)
T cd01045          83 SLMDPLEALRLAIEIEKDAIEFYEELAE------------KAEDPEVKKLFEELAEEERGHLRL---LEE  137 (139)
T ss_pred             hccCHHHHHHHHHHHHHHHHHHHHHHHH------------HcCCHHHHHHHHHHHHHHHHHHHH---HHH
Confidence            4467899999999999999999998751            234789999999999999999999   764

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []

Probab=91.62  E-value=2.8  Score=33.25  Aligned_cols=120  Identities=10%  Similarity=-0.018  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC------
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS------  120 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~------  120 (276)
                      ++.||-+++.|+--...|.....          ...+.. +.+..++++.+.+|..|..-+.+.-..+||.|..      
T Consensus         1 i~~Ln~~l~~e~~~~~~y~~~~~----------~~~~~~~~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg~p~~~~~~~~   70 (142)
T PF00210_consen    1 IEALNEQLALELQASQQYLNMHW----------NFDGPNFPGLAKFFQDQAEEEREHADELAERILMLGGKPSGSPVEIP   70 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----------HHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-SSTSHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHH----------HhcCCCchhhHHHhHHHHHHHHHHHHHHHHHHhcCCCCCCCcHHHhh
Confidence            46899999999888888876521          011222 5688899999999999999966666778887711      


Q ss_pred             -----CCCCCchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495          121 -----RNFLPSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLF  179 (276)
Q Consensus       121 -----~~F~~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~  179 (276)
                           ..+.  |+  .+..+.-.|......|.......   .|+......-.++.-|..|.-.++..|.
T Consensus        71 ~~~~~~~~~--~~~~~l~~~l~~e~~~~~~~~~l~~~a~~~~D~~t~~~~~~~l~~~~~~~~~l~~~l~  137 (142)
T PF00210_consen   71 EIPKPPEWT--DPREALEAALEDEKEIIEEYRELIKLAEKEGDPETADFLDEFLEEEEKHIWMLQAHLT  137 (142)
T ss_dssp             HHHSSSSSS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhccccCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1222  33  66666666667777777666655   5666667777777777777777776654

It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....

>PRK10635 bacterioferritin; Provisional

Probab=90.60  E-value=3.6  Score=35.62  Aligned_cols=124  Identities=10%  Similarity=0.061  Sum_probs=88.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhccc---cCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC--C-
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGG---LGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS--S-  120 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~---~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~--~-  120 (276)
                      =++.||-+|+.|+.-..-|..-+   .+.           +++..-. .+..-+.+|..|...+..=--.|||.|.  . 
T Consensus         7 vi~~LN~~L~~El~Ai~QY~~ha~~~~~~-----------G~~~la~-~~~~ea~eEm~HA~~l~eRIl~LgG~P~~~~~   74 (158)
T PRK10635          7 IINYLNKLLGNELVAINQYFLHARMFKNW-----------GLMRLND-VEYHESIDEMKHADKYIERILFLEGIPNLQDL   74 (158)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------CcHHHHH-HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence            46889999999999888776532   122           2322222 3333388999999882222233778881  1 


Q ss_pred             CCCC-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          121 RNFL-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       121 ~~F~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                      .... ..|+  .+.....+|.-.+.-|+=+..+   ..|...+.+...|+.-|-.|.-++.+.|....
T Consensus        75 ~~~~~g~~v~eml~~dl~~E~~ai~~y~e~i~~a~~~~D~~s~~ll~~iL~dEe~H~~~le~~l~~i~  142 (158)
T PRK10635         75 GKLNIGEDVEEMLRSDLRLELEGAKDLREAIAYADSVHDYVSRDMMIEILADEEGHIDWLETELDLIG  142 (158)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1122 3455  8999999999999999988776   56788899999999999999999999887543

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=88.95  E-value=1.9  Score=32.09  Aligned_cols=56  Identities=14%  Similarity=0.030  Sum_probs=45.8

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC  113 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a  113 (276)
                      ...++.++|.+++..|---..+|.....            ..-++.+++++..+..+|..|+..   ++..
T Consensus        74 ~~~~~~~~l~~~~~~E~~~~~~y~~~~~------------~~~d~~~~~~~~~~~~~E~~H~~~---~~~~  129 (130)
T cd00657          74 TSDDPAEALRAALEVEARAIAAYRELIE------------QADDPELRRLLERILADEQRHAAW---FRKL  129 (130)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHH------------hcCChHHHHHHHHHHHHHHHHHHH---HHhh
Confidence            3467788999999999999999987541            123789999999999999999999   7654

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>PF02915 Rubrerythrin: Rubrerythrin; InterPro: IPR003251 Rubrerythrin (Rr), found in anaerobic sulphate-reducing bacteria [], is a fusion protein containing an N-terminal diiron-binding domain and a C-terminal domain homologous to rubredoxin []

Probab=88.59  E-value=1  Score=35.57  Aligned_cols=53  Identities=19%  Similarity=0.154  Sum_probs=44.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC  113 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a  113 (276)
                      +...+|..|+..|.--..||...+            ...-++.+++++..|+.+|..|+..   |++.
T Consensus        84 ~~~~~l~~a~~~E~~~~~~Y~~~a------------~~~~~~~~~~~~~~l~~~E~~H~~~---l~~l  136 (137)
T PF02915_consen   84 NLEEALEMAIKEEKDAYEFYAELA------------RKAPDPEIRKLFEELAKEEKEHEDL---LEKL  136 (137)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHH------------HHTTSHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHh
Confidence            467889999999999999999865            2345799999999999999999999   7653

The physiological role of Rr has not been identified. The 3-D structure of Desulphovibrio vulgaris rubrerythrin has been solved []. The structure reveals a tetramer of two-domain subunits. In each monomer, the N-terminal 146 residues form a four-alpha-helix bundle containing the diiron-oxo site (centre I), and the C-terminal 45 residues form a rubredoxin-like FeS4 domain.; GO: 0016491 oxidoreductase activity, 0046872 metal ion binding, 0055114 oxidation-reduction process; PDB: 1VJX_A 2FZF_A 3SID_B 3QHC_B 3QHB_B 4DI0_A 1J30_B 1YV1_A 1YUZ_B 1YUX_B ....

>TIGR02284 conserved hypothetical protein

Probab=87.00  E-value=5.6  Score=33.55  Aligned_cols=118  Identities=7%  Similarity=-0.017  Sum_probs=82.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCCCCC--
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSRNFL--  124 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~~F~--  124 (276)
                      ++.||=-+...|=--++|..++     +       .--++..+.++++++.+=..|+.-|++.-..+|+.| ..++|.  
T Consensus         2 i~~Ln~Lie~~~D~~~gY~~aa-----e-------~v~~~~lk~~f~~~~~~~~~~~~eL~~~v~~lGg~p~~~gs~~g~   69 (139)
T TIGR02284         2 IHSLNDLIEISIDGKDGFEESA-----E-------EVKDPELATLFRRIAGEKSAIVSELQQVVASLGGKPEDHGSMVGS   69 (139)
T ss_pred             hHHHHHHHHHcccHHHHHHHHH-----H-------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcHHHH
Confidence            4566766666666677888764     1       113689999999999999999999555556677888 344433  


Q ss_pred             -------------C--chHHHHHHhhcccchhhhhccccccc-CCHHHHHHHHhhhhhhhhhhHHHHHH
Q 044495          125 -------------P--SAPIMTRYYMVPYVGLNGYTGSNPFL-CGYLAKRLAAGLLSPESGQDRIVREY  177 (276)
Q Consensus       125 -------------~--~dpfL~~A~~lE~vGvsAY~Gaap~l-~~~~~l~aAa~IlsVEArHaa~IR~l  177 (276)
                                   .  .+.+|...--=|+..+.+|.-+...- -.+++....-..+.-+-+|...||.+
T Consensus        70 lhr~w~~lks~~~~~~d~aiL~~~e~gEd~~~~~y~~aL~~~~l~~~~r~~l~~q~~~i~~~~d~i~~l  138 (139)
T TIGR02284        70 LHQFWGKIRATLTPNDDYVVLEEAERGEDRAKKAYDETLADQDTPAAARDVALRQYPGVRACHDVIRAL  138 (139)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHhHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHhc
Confidence                         1  12277777788888888888877654 46667777777777767776666653

Members of this protein family are found mostly in the Proteobacteria, although one member is found in the the marine planctomycete Pirellula sp. strain 1. The function is unknown.

>TIGR00754 bfr bacterioferritin

Probab=85.02  E-value=15  Score=30.89  Aligned_cols=125  Identities=10%  Similarity=-0.040  Sum_probs=86.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC-CCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS-RNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~-~~F  123 (276)
                      =++.||=+|+-||--...|..-..-.  .      .-++ +.....+...+.+|..|..-+.+--..+||.|  +. ...
T Consensus         7 ~~~~LN~~l~~E~~a~~~Y~~~~~~~--~------~~~~-~g~a~~~~~~a~EE~~Ha~~laeri~~lGg~p~~~~i~~~   77 (157)
T TIGR00754         7 VIQHLNKQLTNELTAINQYFLHARMQ--K------NWGL-KELADHEYHESIDEMKHADEIIERILFLEGLPNLQDLGKL   77 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH--H------cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcCCCC
Confidence            45889999999996655555432100  0      0111 34455677788899999988555555678888  11 111


Q ss_pred             C-CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      . ..|+  .+....-.|......|.....   ...|+.....--.|+.-|-.|.-++|+.|..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~e~i~~A~~~~D~~t~~ll~~~i~eee~h~~~l~~~l~~  140 (157)
T TIGR00754        78 RIGETVREMLEADLALELDVLNRLKEAIAYAEEVRDYVSRDLLEEILEDEEEHIDWLETQLEL  140 (157)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233  777788888888889988754   5778888888889999999999999998874

Bacterioferritin is a homomultimer most species. In Neisseria gonorrhoeae, Synechocystis PCC6803, Magnetospirillum magnetotacticum, and Pseudomonas aeruginosa, two types of subunit are found in a heteromultimeric complex, with each species having one member of each type. At present, both types of subunit are including in this single model.

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=80.79  E-value=25  Score=28.78  Aligned_cols=121  Identities=11%  Similarity=-0.106  Sum_probs=82.8

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh---cCCcC--CC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH---KVCAS--SR  121 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL---g~~P~--~~  121 (276)
                      ..+.||=|+.-|+-....|..-.      ....  ..++ +.+.+.+..++..|..|..-   +.+.|   ||.|.  ..
T Consensus         2 t~~~L~~a~~~E~~a~~~Y~~~a------~~a~--~~g~-~~~a~~f~~~a~eE~~HA~~---~~~~l~~l~g~~~~~~~   69 (134)
T cd01041           2 TEKNLLAAFAGESQARNRYTYFA------EKAR--KEGY-EQIARLFRATAENEKEHAKG---HFKLLKGLGGGDTGPPI   69 (134)
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHH------HHHH--HCCH-HHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCCcCCCC
Confidence            35789999999999877776532      1100  1222 46778899999999999988   55554   46664  12


Q ss_pred             CCCCchHHHHHHhhcccc-hhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495          122 NFLPSAPIMTRYYMVPYV-GLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLF  179 (276)
Q Consensus       122 ~F~~~dpfL~~A~~lE~v-GvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~  179 (276)
                      .|.+....+..+..-|.- -...|.-.+.   .-.+.......-.|+-.|.+|..++..+|.
T Consensus        70 ~~~~~~~~l~~~~~~E~~e~~~~y~~~~~~A~~e~d~~~~~~f~~i~~~E~~H~~~l~~~l~  131 (134)
T cd01041          70 GIGDTLENLKAAIAGETYEYTEMYPEFAEVAEEEGFKEAARSFEAIAEAEKVHAERYKKALE  131 (134)
T ss_pred             CcchHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            233222266667777753 4466665444   456677788888999999999999988875

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

>cd01041 Rubrerythrin Rubrerythrin, ferritin-like diiron-binding domain

Probab=80.43  E-value=7  Score=32.09  Aligned_cols=59  Identities=19%  Similarity=0.075  Sum_probs=46.7

Q ss_pred             CCchhHHHHHHHHHHHHH-HHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495           45 RDDVDNLQFAQSLEHLEA-ELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK  115 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA-~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg  115 (276)
                      .+..++|..++..|.-|+ +.|...+.      ..   ...-+...++.+++|..+|..|++-   |+..|+
T Consensus        72 ~~~~~~l~~~~~~E~~e~~~~y~~~~~------~A---~~e~d~~~~~~f~~i~~~E~~H~~~---l~~~l~  131 (134)
T cd01041          72 GDTLENLKAAIAGETYEYTEMYPEFAE------VA---EEEGFKEAARSFEAIAEAEKVHAER---YKKALE  131 (134)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHH------HH---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHhh
Confidence            456699999999999887 78876431      10   2345778999999999999999999   888875

Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	276
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 8e-08
 Identities = 43/246 (17%), Positives = 76/246 (30%), Gaps = 73/246 (29%)

Query: 59  HLEAELFLGGGLGYGLDKVAPYL----KANLD-----NLTRAIITEFGYQEVGHLRCGHA 109
           H++ E    G   Y    +          N D     ++ ++I+++   +E+ H+     
Sbjct: 6   HMDFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK---EEIDHI----- 54

Query: 110 LLQCHKVCASSRNF--LPSAPIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPE 167
           ++    V  + R F  L S         V  V    Y         +L   +      P 
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINY--------KFLMSPIKTEQRQPS 106

Query: 168 SGQDRIV--REYLFGRADQIVKPYNYTVARMKGFLSLRS--LELNRRLVAMSRPWAFNSF 223
                 +  R+ L+   +Q+   YN  V+R++ +L LR   LEL                
Sbjct: 107 MMTRMYIEQRDRLY-NDNQVFAKYN--VSRLQPYLKLRQALLEL---------------- 147

Query: 224 SYPRSPEEILRISYGTG------------NEHVPGRFFPQGGKW---KNCKTSKEENLML 268
                P + + I  G                +           W   KNC + +    ML
Sbjct: 148 ----RPAKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202

Query: 269 QLLCRK 274
           Q L  +
Sbjct: 203 QKLLYQ 208

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	276
2ib0_A	170	Conserved hypothetical alanine rich protein; 4-hel	98.03
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	97.81
2fzf_A	175	Hypothetical protein; structural genomics, southea	97.72
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	97.58
4etr_A	153	Putative uncharacterized protein; DUF2383, domain	96.36
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	96.21
1nfv_A	179	Bacterioferritin; 24 subunits in the active molecu	96.17
2y3q_A	158	Bacterioferritin; metal binding protein, redox; HE	96.05
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	95.93
3fse_A	365	Two-domain protein containing DJ-1/THIJ/PFPI-like	95.82
3uoi_A	161	Bacterioferritin, BFR; structural genomics, TB str	95.71
2fkz_A	155	Bacterioferritin; ferroxidase, DIIRON site, iron T	95.59
3gvy_A	161	Bacterioferritin; iron storage, DI-iron, ferroxida	95.29
3qb9_A	174	Bacterioferritin, BFR; cytosol, structural genomic	95.12
3r2k_A	154	Bacterioferritin, BFR; bacterial ferritin, iron bi	94.37
2vzb_A	170	Putative bacterioferritin-related protein; DPS, DP	94.33
4am5_A	159	Bacterioferritin; metal binding protein, ferroxida	93.97
2oh3_A	167	Rubrerythrin, COG1633: uncharacterized conserved p	93.24
3fvb_A	182	Bacterioferritin; niaid, ssgcid, decode, structura	92.99
1vjx_A	157	Putative ferritin-like DIIRON-carboxylate protein;	92.93
1ji5_A	142	DLP-1; dodecamer, four-helix bundle, metal transpo	91.39
3q4o_A	196	Uncharacterized protein MJ0754; ferritin-like prot	90.52
2fzf_A	175	Hypothetical protein; structural genomics, southea	89.95
1n1q_A	149	DPS protein; four-helix bundle, unknown function;	89.24
1jig_A	146	DLP-2; dodecamer, four-helix bundle, metal transpo	87.55
3ak8_A	167	DNA protection during starvation protein; DPS-like	86.19
1j30_A	144	144AA long hypothetical rubrerythrin; sulerythrin,	85.83
3oj5_A	189	Ferritin family protein; ferroxidase, cytosol, oxi	83.72
2jd6_0	174	Ferritin homolog, ferritin; metal transport, iron,	83.42
2qqy_A	149	Sigma B operon; dodecameric alpha-helical, ferriti	82.32
2vxx_A	192	Starvation induced DNA binding protein; stress res	80.41
1jgc_A	161	Bacterioferritin, BFR; iron storage protein, metal	80.15

>2ib0_A Conserved hypothetical alanine rich protein; 4-helix bundle, structural genomics, PSI-2, protein structur initiative; 2.00A {Mycobacterium tuberculosis} SCOP: a.25.1.9

Probab=98.03  E-value=2.9e-06  Score=73.47  Aligned_cols=126  Identities=13%  Similarity=-0.018  Sum_probs=100.4

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc----C
Q 044495           44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA----S  119 (276)
Q Consensus        44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P----~  119 (276)
                      ...|+++||-||..||  +.-|-+     |+.      -+.+++.+++.+.+...+-..|+..|...-..+|+.|    .
T Consensus        19 ~~~d~~aL~~ALaaEh--aAIyaY-----Gv~------~a~l~~~~~~~a~~~~~~HrarRD~L~~~l~~~G~~pp~a~a   85 (170)
T 2ib0_A           19 GSADNAALCDALAVEH--ATIYGY-----GIV------SALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAA   85 (170)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHH-----HHH------HHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCS
T ss_pred             CchHHHHHHHHHHHHH--HHHHHH-----HHH------HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcC
Confidence            4578999999999998  333433     332      2567888999999998899999999333333345564    4


Q ss_pred             CCCCC--CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          120 SRNFL--PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       120 ~~~F~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                      .|.|+  ..||  -+..+..+|.=...+|.+..+.-++++.++.|+++|.-++.|....|..+.+..
T Consensus        86 aY~lP~~v~d~asa~~lAa~lE~~~A~ay~~~v~~a~~~~~R~~A~~aL~~aAvr~a~wr~alG~~P  152 (170)
T 2ib0_A           86 GYQLPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVLGAWP  152 (170)
T ss_dssp             SCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            56665  4555  777888999999999999999999999999999999999999999999998765

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=97.81  E-value=9e-05  Score=61.82  Aligned_cols=124  Identities=15%  Similarity=0.053  Sum_probs=99.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC--Cc----C
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKV--CA----S  119 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~--~P----~  119 (276)
                      +..++|++|+..|.=...||...+.         .+...-++.++.++.+++.+|..|.+.   |++..+.  .|    .
T Consensus         5 ~~~e~L~~Ai~~E~~~~~~Y~~lA~---------~~~~~~~~~~k~~f~~LA~eE~~H~~~---l~~~~~~~~~~~~~~~   72 (167)
T 2oh3_A            5 TLAEFLAHAIALETEAAERYVELAD---------MMEAHNNLDTATVFRDMARFSTLHGDE---IKQRSRALELPKLMSW   72 (167)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHHHTTSCCCCCCGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhCCCHHHHHHHHHHHHHHHHHHHH---HHHHHhcCCCCccccc
Confidence            4788999999999999999988641         001234789999999999999999999   7766553  23    1


Q ss_pred             CC------CC----C---CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          120 SR------NF----L---PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       120 ~~------~F----~---~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                      ..      .+    .   .+++  .+..|.-.|.-+..-|.-++....|+..+.+...|..-|.+|...++.++...
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~A~~~E~~a~~fY~~~a~~~~d~~~k~~~~~la~eE~~H~~~l~~~~~~~  149 (167)
T 2oh3_A           73 QYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKT  149 (167)
T ss_dssp             GTSCCCCCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             cccCCCcHhhhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            11      11    0   1122  78899999999999999999999999999999999999999999999887643

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=97.72  E-value=0.00022  Score=59.68  Aligned_cols=124  Identities=13%  Similarity=-0.097  Sum_probs=98.2

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh-cCCc--CC-
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH-KVCA--SS-  120 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL-g~~P--~~-  120 (276)
                      .+-.++|++|+..|.-...||...+.            ..-++.++.++.+++.+|..|.+.+..+...+ |+.|  .. 
T Consensus        19 ~~~~e~L~~A~~~E~~a~~~Y~~~A~------------~~~~~~~~~~f~~lA~~E~~H~~~l~~~~~~l~g~~~~~~~~   86 (175)
T 2fzf_A           19 FSLEELLGMAIKAEIGAREFYKSLAE------------KIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPK   86 (175)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHHHH------------SCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH------------HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchh
Confidence            46789999999999999999998652            22358899999999999999999944443333 3333  11 


Q ss_pred             -CCCC----------C-chH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          121 -RNFL----------P-SAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       121 -~~F~----------~-~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                       ..|.          . .++  .|..+.-.|.-...-|.-.+....++.++.+.-.|...|.+|...++.++..
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~L~~ai~~E~~a~~~Y~~~a~~~~d~~~r~l~~~ia~eE~~H~~~l~~~l~~  160 (175)
T 2fzf_A           87 EHIGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYEL  160 (175)
T ss_dssp             CCBSCCCCCCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhHHhccccCCHHHHHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1222          1 122  7888889999999999999999999999999999999999999999988764

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=97.58  E-value=0.00039  Score=57.53  Aligned_cols=120  Identities=14%  Similarity=0.013  Sum_probs=98.4

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc-CC-c----
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK-VC-A----  118 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg-~~-P----  118 (276)
                      .+..++|.+|+..|.-...||...+.             .-++.+++++.++|.+|..|.+.   |++..+ +. |    
T Consensus        13 ~~~~e~L~~Ai~~E~~~~~~Y~~lA~-------------~~~~~~k~lF~~LA~eE~~H~~~---l~~l~~~~~~~~~~~   76 (157)
T 1vjx_A           13 MKVSDILTVAIRLEEEGERFYRELSE-------------HFNGEIKKTFLELADQERIHAEI---FRKMSDQENWDEVDS   76 (157)
T ss_dssp             CBHHHHHHHHHHHHHHHHHHHHHHTT-------------SCCSHHHHHHHHHHHHHHHHHHH---HHHHHHHSCHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-------------cCCHHHHHHHHHHHHHHHHHHHH---HHHhhccCcchhHHH
Confidence            57889999999999999999998752             24689999999999999999999   555533 21 2    


Q ss_pred             ------CCCCCC---C------chH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          119 ------SSRNFL---P------SAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       119 ------~~~~F~---~------~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                            ....|.   .      .+.  .+..|.-.|.-.+.-|.-.+..+.++..+.+...|..-|..|...++.++.+
T Consensus        77 ~l~~~~~~~~f~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~~a~~~~d~~~k~l~~~la~eE~~H~~~l~~~~~~  155 (157)
T 1vjx_A           77 YLAGYAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE  155 (157)
T ss_dssp             BCCSBCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhccchhhhhhcccccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                  112232   1      122  7888999999999999999999999999999999999999999999987654

>4etr_A Putative uncharacterized protein; DUF2383, domain of unknown function, cytoplasmic, unknown FU; 2.25A {Pseudomonas aeruginosa}

Probab=96.36  E-value=0.034  Score=45.98  Aligned_cols=124  Identities=10%  Similarity=-0.078  Sum_probs=97.3

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CCCCC
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SSRNF  123 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~~~F  123 (276)
                      ...++.||=.+..++==-++|.+++..            --++.++.++++++.+...|+.-|.+.-..+|+.| ...+|
T Consensus        10 ~~~i~~Ln~Li~~~~D~~~gY~~aae~------------~~d~~lk~~f~~~a~~~~~~~~eL~~~i~~lGg~p~~~~s~   77 (153)
T 4etr_A           10 DDTLDVLNDLLQTSKDGEAGFHACAED------------LRDPQLKAAMLEQSRDCAAAADELERIVLELGGKPKDSTSF   77 (153)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC------
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHH------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCcH
Confidence            357899999999999999999997521            23689999999999999999999666666688888 22222


Q ss_pred             C---------------Cch--HHHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L---------------PSA--PIMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~---------------~~d--pfL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      .               ..|  .+|..+..=|+..+.+|.-+..---.+++..+...++.-+-+|...|+.+-..
T Consensus        78 ~g~~hr~~~~lks~~~~~~~~~iL~~~~~gE~~~~~~Y~~al~~~lp~~~r~ll~~q~~~~~~~~d~~~~Lr~~  151 (153)
T 4etr_A           78 AGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKSLPAEIHQVIERQYQGVLRHHDRVRALRDA  151 (153)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            2               111  28888999999999999988775567888999999999999999999887544

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=96.21  E-value=0.053  Score=42.75  Aligned_cols=124  Identities=8%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC--CCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS--RNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~--~~F  123 (276)
                      -++.||-+++.|+--..+|.....-          ..+.. +.+...+.+++.+|..|...+.+....+|+.|..  ..+
T Consensus        11 ~~~~Ln~~l~~E~~a~~~Y~~~a~~----------~~~~~~~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~   80 (149)
T 2qqy_A           11 LIEGLNEDLAGEYSAIIMYNHNAAT----------VSGIYRQVLKPFFESEISDEQGHALYLAEKIKTLGGTPTTIPLRV   80 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH----------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----------HcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCCCCC
Confidence            3678999999999999999875310          01111 4688899999999999999855555667888721  111


Q ss_pred             C-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      . ..++  .+..+.-.|.-.+..|.-....   ..|+......-.|+..|-.|.-+++.++.+
T Consensus        81 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  143 (149)
T 2qqy_A           81 KQAEDVREMLEYARQSEYETIKRYEKRKEQAANLNMTELVVKLEDMIADETNHMEELDRLLND  143 (149)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            1 1222  7788888888888889887666   578888888999999999999999998864

>1nfv_A Bacterioferritin; 24 subunits in the active molecule, DIIRON HAEM Fe-coproporphyrin III cofactor, iron storage-electron complex; HET: FEC; 1.95A {Desulfovibrio desulfuricans} SCOP: a.25.1.1 PDB: 1nf6_A* 1nf4_A*

Probab=96.17  E-value=0.027  Score=46.71  Aligned_cols=125  Identities=10%  Similarity=0.024  Sum_probs=94.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCC---C
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRN---F  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~---F  123 (276)
                      -++.||-+++.|+--..+|.....     .+.   ..++ +.+..++.+++.+|..|...+.+....+|+.|....   .
T Consensus        12 ~~~~Ln~~l~~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~   82 (179)
T 1nfv_A           12 VIEVLNKARAMELHAIHQYMNQHY-----SLD---DMDY-GELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKV   82 (179)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTB-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHh---cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCcCCCCCcC
Confidence            368899999999999999987531     000   1122 578999999999999999986666666788772111   1


Q ss_pred             C-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      . ..++  .|..+.-.|.-.+..|.-....   ..|+......-.|+..|-.|.-+++.+|..
T Consensus        83 ~~~~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~  145 (179)
T 1nfv_A           83 VTGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSH  145 (179)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233  8888888899888889876663   578888888889999999999999988764

>2y3q_A Bacterioferritin; metal binding protein, redox; HET: HEM; 1.55A {Escherichia coli} PDB: 1bfr_A* 1bcf_A* 2htn_A* 2vxi_A* 3e1j_A* 3e1l_A* 3e1m_A* 3e1n_A* 3e1o_A* 3e1p_A* 3ghq_A* 3e1q_A* 3e2c_A* 3isf_A* 3is8_A* 3ise_A* 3is7_A*

Probab=96.05  E-value=0.046  Score=43.76  Aligned_cols=124  Identities=9%  Similarity=0.019  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC---CCCC
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS---RNFL  124 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~---~~F~  124 (276)
                      .+.||-+++.|+--..+|.....     .+.   ..++ +.+...+.+++.+|..|...+......+|+.|..   ....
T Consensus         8 ~~~Ln~~l~~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~~   78 (158)
T 2y3q_A            8 INYLNKLLGNELVAINQYFLHAR-----MFK---NWGL-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKLN   78 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHh---hcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcCC
Confidence            68899999999999999987531     000   1223 5788999999999999999855555667887721   1111


Q ss_pred             -CchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          125 -PSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       125 -~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                       ..|+  .+..+.-.|.-....|.-.....   .|+......-.|+..|-.|...++.++..
T Consensus        79 ~~~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~  140 (158)
T 2y3q_A           79 IGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDL  140 (158)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1333  78888888888889998877663   78888888889999999999999998764

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=95.93  E-value=0.056  Score=43.39  Aligned_cols=125  Identities=13%  Similarity=0.017  Sum_probs=93.4

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC---CCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS---RNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~---~~F  123 (276)
                      =++.||-+++.|+--...|.....     .+.   ..++ +.+...+.+++.+|..|...+......+|+.|..   ...
T Consensus         7 ~~~~Ln~~l~~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~ee~~Ha~~l~e~i~~lgg~p~~~~~~~~   77 (161)
T 1jgc_A            7 VIEFLNAALRSELTAISQYWVHFR-----LQE---DWGL-AKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPL   77 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHh---CCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCcC
Confidence            368899999999999999987531     000   1122 5678889999999999999855555567887721   111


Q ss_pred             C-CchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      . ..++  .+..+.-.|.-.+..|.-.....   .|+......-.|+..|-.|..+++.++..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~  140 (161)
T 1jgc_A           78 RIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISL  140 (161)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233  78888888888888998877665   68888888889999999999999998864

>3fse_A Two-domain protein containing DJ-1/THIJ/PFPI-like ferritin-like domains; structural genomics; HET: MSE CSX; 1.90A {Anabaena variabilis atcc 29413}

Probab=95.82  E-value=0.055  Score=51.30  Aligned_cols=131  Identities=15%  Similarity=0.054  Sum_probs=97.3

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC-C----
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS-S----  120 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~-~----  120 (276)
                      .=+..||.|+.=|++..+.|.+-+            ..--|+.++.++++|..++..|+.-|...-+.+|+.|+ .    
T Consensus       210 ~~v~~ln~a~~ge~~~~~a~e~~a------------~~~~d~~~~~~~~~i~~~~~~h~~~l~~~~~~~g~~~~~~~~~~  277 (365)
T 3fse_A          210 DIVRGLNTALGGERYSLEALEKYT------------EKESDVEAKALFQEMITNKQRHIEYLETYLTRLGEKPSLSANIA  277 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGSCC--
T ss_pred             hhhHHHHHHhhcChhHHHHHHHHH------------HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCcCcchh
Confidence            345679999999999999998743            12248999999999999999999995555566788881 1    


Q ss_pred             C-------CCCCchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhccccccCC
Q 044495          121 R-------NFLPSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRADQIVKP  188 (276)
Q Consensus       121 ~-------~F~~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~~~~v~P  188 (276)
                      .       .|...|+  .|.-++--|..|+.=+.=.....+||......--|+.--+.|...+-.+...|....++|
T Consensus       278 ~~~a~~~~~~~~~~~~~~l~~al~~~~~gi~~~~~l~~~~~dp~~~~i~~~i~~~l~~~e~~~~~l~~~~~~~~~~~  354 (365)
T 3fse_A          278 NQYAKVKTALTGSDDIYQIRSALGDIQTGIGDIGNLCAMYTDPIATAIFKEIYKDLVKYEQRLVSLYRTRTNATVQP  354 (365)
T ss_dssp             -------------CHHHHHHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred             HHHHHHHHHhcCCChHHHHHHHhcchhhhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence            1       2334555  688888889999988887888899999999999999877777777766555555434443

>3uoi_A Bacterioferritin, BFR; structural genomics, TB structural genomics consortium, TBSG ferroxidation and iron storage, cytosol; HET: HEM; 1.90A {Mycobacterium tuberculosis} PDB: 3uof_A* 3qb9_A* 2wtl_A* 3bkn_A*

Probab=95.71  E-value=0.086  Score=42.57  Aligned_cols=125  Identities=9%  Similarity=-0.090  Sum_probs=90.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCCC---
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNFL---  124 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F~---  124 (276)
                      ++.||-+++.|+--..-|..-..     .+.   ..++ +.+...+.+++.+|..|..-+......+||.|......   
T Consensus        10 ~~~Ln~~la~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~ee~~Had~l~e~i~~lGg~p~~~~~~~~~   80 (161)
T 3uoi_A           10 LRLLNEQLTSELTAINQYFLHSK-----MQD---NWGF-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSLR   80 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHH---hCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcCCCCCCCC
Confidence            68999999999888777764320     000   0112 56788999999999999998555556688887211111   


Q ss_pred             -CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          125 -PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       125 -~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                       ..++  .+..+.-.|.-....|.....   -..|+......-.|+..|-.|..+++..|...
T Consensus        81 ~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~i  143 (161)
T 3uoi_A           81 IGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM  143 (161)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1233  777777778888888887744   45688899999999999999999999987753

>2fkz_A Bacterioferritin; ferroxidase, DIIRON site, iron T metal binding protein; HET: HEM; 2.00A {Azotobacter vinelandii} SCOP: a.25.1.1 PDB: 2fl0_A* 1sof_A*

Probab=95.59  E-value=0.1  Score=41.36  Aligned_cols=125  Identities=10%  Similarity=0.017  Sum_probs=92.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC---CCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS---RNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~---~~F  123 (276)
                      =++.||-+++.|+--..+|.....     .+ .  ..++ +.+...+.+.+.+|..|..-+.+....+|+.|..   ...
T Consensus         7 ~~~~Ln~~l~~E~~a~~~Y~~~a~-----~~-~--~~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~~~~~   77 (155)
T 2fkz_A            7 VIQHLNKILGNELIAINQYFLHAR-----MY-E--DWGL-EKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKL   77 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HH-H--HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HH-H--hCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCC
Confidence            368899999999999999986531     00 0  1122 4577889999999999999855555567888721   111


Q ss_pred             C-CchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      . ..++  .+..+.-.|.-.+..|.-.....   .|+......-.|+..|-.|..+++..+..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~eee~h~~~l~~~l~~  140 (155)
T 2fkz_A           78 LIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDL  140 (155)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233  77888888888888898877666   68888888889999999999999988764

>3gvy_A Bacterioferritin; iron storage, DI-iron, ferroxida activity, heme, metal binding protein; HET: HEM; 2.80A {Rhodobacter sphaeroides} SCOP: a.25.1.1

Probab=95.29  E-value=0.084  Score=42.71  Aligned_cols=123  Identities=10%  Similarity=-0.044  Sum_probs=89.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhccc---cCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGG---LGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~---~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F  123 (276)
                      =++.||-+|+.|+--..-|..-.   .|.           ++ +.+...+.+++.+|..|+.-+...-..+||.|.....
T Consensus         7 ~~~~Ln~~la~E~~a~~~Y~~~a~~~~~~-----------~~-~~l~~~f~~~a~ee~~Had~l~eri~~lGg~p~~~~~   74 (161)
T 3gvy_A            7 VIEYLNAALRSELTAVSQYWLHYRLQEDW-----------GF-GSIAHKSRKESIEEMHHADKLIQRIIFLGGHPNLQRL   74 (161)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----------TC-TTHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----------Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCccCCC
Confidence            36789999999988777775321   121           22 3567889999999999999855555668888721111


Q ss_pred             C----CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          124 L----PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       124 ~----~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                      .    ..++  .+..+.-.|...+..|.-...   -..|+......-.|+..|-.|..+++..+...
T Consensus        75 ~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~~~eEe~h~~~l~~~l~~i  141 (161)
T 3gvy_A           75 NPLRIGQTLRETLDADLAAEHDARTLYIEARDHCEKVRDYPSKMLFEELIADEEGHIDYLETQIDLM  141 (161)
T ss_dssp             CCCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1    1233  777888888888888988444   46788889999999999999999999887643

>3qb9_A Bacterioferritin, BFR; cytosol, structural genomics, TB structural genomics consort TBSGC, metal binding protein; HET: HEM; 2.11A {Mycobacterium tuberculosis} PDB: 2wtl_A* 3bkn_A*

Probab=95.12  E-value=0.11  Score=42.58  Aligned_cols=126  Identities=9%  Similarity=-0.087  Sum_probs=93.3

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCC---CC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSR---NF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~---~F  123 (276)
                      =.+.||-+++.|+--..+|.....     .+.   ..++ +.+..++.+++.+|..|...+.+....+|+.|...   ..
T Consensus         9 ~~~~Ln~~l~~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~eE~~Ha~~l~e~i~~lgg~p~~~~i~~~   79 (174)
T 3qb9_A            9 VLRLLNEQLTSELTAINQYFLHSK-----MQD---NWGF-TELAAHTRAESFDEMRHAEEITDRILLLDGLPNYQRIGSL   79 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHh---CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccCCCCC
Confidence            368899999999999999986431     000   1223 57889999999999999998666666678877211   11


Q ss_pred             C-CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          124 L-PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       124 ~-~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                      . ..++  .+..+.-.|.-....|.-...   ...|+......-.|+..|-.|...++..+..-
T Consensus        80 ~~~~~~~e~l~~al~~E~~~~~~y~~l~~~a~~~~D~~t~~~l~~~l~eEe~h~~~l~~~l~~i  143 (174)
T 3qb9_A           80 RIGQTLREQFEADLAIEYDVLNRLKPGIVMCREKQDTTSAVLLEKIVADEEEHIDYLETQLELM  143 (174)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1233  788888888888888987764   34688888888889999999999999887643

>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A

Probab=94.37  E-value=0.33  Score=38.84  Aligned_cols=125  Identities=6%  Similarity=-0.054  Sum_probs=90.6

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC--CCCC-
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS--RNFL-  124 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~--~~F~-  124 (276)
                      ++.||=+|+.|+--..-|..-..     .+ .  ..++ +.+...+.+.+.+|..|..-+......+||.|..  .... 
T Consensus         8 ~~~Ln~~la~E~~a~~~Y~~~a~-----~~-~--~~~~-~~l~~~f~~~a~ee~~had~l~eri~~lGg~p~~~~~~~~~   78 (154)
T 3r2k_A            8 IDYLNTLLTGELAARDQYFIHSR-----MY-E--DWGF-SKLYERLNHEMEEETQHADALLRRILLLEGTPRMRPDDIHP   78 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HH-H--HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HH-H--cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            57899999999887777765320     00 0  0112 4678889999999999999855555578888821  1111 


Q ss_pred             CchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhh-hhhhhHHHHHHhhhc
Q 044495          125 PSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSP-ESGQDRIVREYLFGR  181 (276)
Q Consensus       125 ~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsV-EArHaa~IR~lL~~~  181 (276)
                      ..++  .+..+.-.|.-....|.......   .|+......-.|+.. |-.|..+++..+...
T Consensus        79 ~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~~~e~ee~h~~~l~~~l~~i  141 (154)
T 3r2k_A           79 GTTVPEMLEADLKLERHVRAALAKGIALCEQHKDFVSRDILKAQLADTEEDHAYWLEQQLGLI  141 (154)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1233  67777788888888888877664   688888999999999 999999999887643

>2vzb_A Putative bacterioferritin-related protein; DPS, DPSL, iron, oxidative stress, metal transport; 2.30A {Bacteroides fragilis}

Probab=94.33  E-value=0.36  Score=38.97  Aligned_cols=123  Identities=15%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC----
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS----  120 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~----  120 (276)
                      ++.||-+|+.|+--...|.....=          ..+.. ..+...+.+.+.+|..|..-+.+....+|+.|  ..    
T Consensus        19 ~~~Ln~~l~~E~~a~~~Y~~~a~~----------~~~~~~~~l~~~f~~~a~ee~~Had~lae~i~~lGg~p~~~~~~~~   88 (170)
T 2vzb_A           19 IDQLNAALSEEWLAYYQYWVGALV----------VEGAMRADVQGEFEEHAEEERHHAQLIADRIIELEGVPVLDPKKWF   88 (170)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----------CBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH----------hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCHHHHH
Confidence            678999999999999998875310          01111 35778899999999999998666666688877  11    


Q ss_pred             ----CCC-C--CchH--HHHHHhhcccchhhhhcccccccC--CHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          121 ----RNF-L--PSAP--IMTRYYMVPYVGLNGYTGSNPFLC--GYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       121 ----~~F-~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~--~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                          ..+ .  ..++  .+..+.-.|.-....|.-.....+  |+......-.|+..|-.|..+++.++..
T Consensus        89 ~~~~~~~~~~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~D~~t~~~l~~~~~ee~~h~~~l~~~l~~  159 (170)
T 2vzb_A           89 ELARCKYDSPTAFDSVSLLNQNVSSERCAILRYQEIANFTNGKDYTTCDIAKHILAEEEEHEQDLQDYLTD  159 (170)
T ss_dssp             HHCSSCCCCCCSCBHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111 1  1233  677777777778888887766553  6677777789999999999999988763

>4am5_A Bacterioferritin; metal binding protein, ferroxidase centre, iron storage, DI centre, iron channel, heme binding; HET: HEM; 1.58A {Blastochloris viridis} PDB: 4am2_A* 4am4_A*

Probab=93.97  E-value=0.37  Score=39.32  Aligned_cols=127  Identities=9%  Similarity=-0.054  Sum_probs=90.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC----
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS----  120 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~----  120 (276)
                      =++.||=+++.|+--..-|..-+.      ...  ..++ +.+...+.+.+.+|..|..-+-.....+||.|  ..    
T Consensus         7 vi~~LN~~l~~El~A~~~Y~~~a~------~~~--~~g~-~~~a~~f~~~a~eE~~HA~~l~~~i~~lGG~p~~~~~~~~   77 (159)
T 4am5_A            7 VIEYLNRGLRSELTAVSQYWLHYR------MLE--DWGY-KDLAKKWRAESIEEMAHADKFVERILFLEGLPNLQTLDPL   77 (159)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------HHH--HHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHh--cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc
Confidence            468899999999998888865321      000  1122 45778899999999999987444444578888  11    


Q ss_pred             CCCCCchHHHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          121 RNFLPSAPIMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       121 ~~F~~~dpfL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                      ..|.+..-.+..+.-.|.-.+..|.-....   ..|+......-.|+..|-.|..++++.|....
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eEeeH~~~l~~~L~~i~  142 (159)
T 4am5_A           78 RIGQTVKEVLESDLAAEREARALYQEGAAYAASVGDFPSKNLFEELMGDEEHHIDFLETQLDLVS  142 (159)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            112222227788888888888899875554   56788888888999999999999998877533

>2oh3_A Rubrerythrin, COG1633: uncharacterized conserved protein; ZP_00055496.1, COG1633: uncharacterized conSer protein; HET: MSE PGE; 2.00A {Magnetospirillum magnetotacticum} SCOP: a.25.1.8

Probab=93.24  E-value=0.17  Score=41.76  Aligned_cols=56  Identities=16%  Similarity=0.195  Sum_probs=48.1

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK  115 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg  115 (276)
                      .++.++|..|+..|.--.+||...+            ...-|+.++.++.+|+.+|..|...   |++.+.
T Consensus        92 ~~~~~~l~~A~~~E~~a~~fY~~~a------------~~~~d~~~k~~~~~la~eE~~H~~~---l~~~~~  147 (167)
T 2oh3_A           92 MTPYHALRYARDNEIRGMEYYKEAA------------ANSADPEVKRLGADFAAEEAEHVVA---LDKWIE  147 (167)
T ss_dssp             GSHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            3688999999999999999999874            2335899999999999999999999   666654

>3fvb_A Bacterioferritin; niaid, ssgcid, decode, structural genomics, seattle structural genomics center for infectious disease; HET: HEM; 1.81A {Brucella melitensis biovar ABORTUS2308}

Probab=92.99  E-value=0.87  Score=38.04  Aligned_cols=127  Identities=15%  Similarity=0.020  Sum_probs=92.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCC---C
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSR---N  122 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~---~  122 (276)
                      .=++.||-+|+.|+--...|..-..     .+.   ..++ +.+...+.+.+.+|..|..-+......+||.|...   .
T Consensus        27 ~~~~~LN~~la~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~eE~~Had~laeri~~lGg~p~~~~~~~   97 (182)
T 3fvb_A           27 KVIERLNEALFLELGAVNQYWLHYR-----LLN---DWGY-TRLAKKEREESIEEMHHADKLIDRIIFLEGFPNLQTVSP   97 (182)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HHH---CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCcCCCCCC
Confidence            3468899999999888877765320     000   0122 46788999999999999998555556688887211   1


Q ss_pred             CC-CchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          123 FL-PSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       123 F~-~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                      .. ..++  .+..+.-.|...+..|.-...   ...|+......-.|+..|-.|..+++..+...
T Consensus        98 ~~~~~~~~e~l~~~l~~E~~~~~~y~~~i~~A~~~~D~~t~~~L~~il~eEe~h~~~l~~~l~~i  162 (182)
T 3fvb_A           98 LRIGQNVKEVLEADLKGEYDARASYKESREICDKLGDYVSKQLFDELLADEEGHIDFLETQLDLL  162 (182)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            11 1233  777788888888888987544   45788899999999999999999999887643

>1vjx_A Putative ferritin-like DIIRON-carboxylate protein; structural genomics, joint center for structural genomics, J protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.25.1.1

Probab=92.93  E-value=0.22  Score=40.79  Aligned_cols=56  Identities=21%  Similarity=0.137  Sum_probs=48.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495           44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH  114 (276)
Q Consensus        44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL  114 (276)
                      ..++.++|.+|+..|.--..||...+            ...-++.++.++.+|+.+|..|...   |++.+
T Consensus        98 ~~~~~~~l~~ai~~E~~a~~~Y~~~a------------~~~~d~~~k~l~~~la~eE~~H~~~---l~~~~  153 (157)
T 1vjx_A           98 DLTLKEVLDIAISVEKDSIILYYELK------------DGLVNSDAQKTVKKIIDQEKEHLRK---LLEMK  153 (157)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHH------------HHCCSHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHH------------HhCCCHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            35689999999999999999999875            2235789999999999999999999   76654

>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1

Probab=91.39  E-value=2.2  Score=33.52  Aligned_cols=119  Identities=8%  Similarity=-0.060  Sum_probs=71.8

Q ss_pred             hhHHHHHHHHHH---HHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC----
Q 044495           48 VDNLQFAQSLEH---LEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS----  120 (276)
Q Consensus        48 ~diLNfALnLEy---LEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~----  120 (276)
                      ++.||=.|+-|+   +-..-|.+-+.|.++            +.+...+.+.+.+|..|+.-+.+--..+||.|..    
T Consensus         3 ~~~Ln~~la~e~~~~~~~~~~hw~v~g~~f------------~~l~~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~   70 (142)
T 1ji5_A            3 IEVLNKQVADWSVLFTKLHNFHWYVKGPQF------------FTLHEKFEELYTESATHIDEIAERILAIGGKPVATMKE   70 (142)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhcccCCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Confidence            578999999995   444444443434332            4577889999999999999866666678888821    


Q ss_pred             ------CC-CC-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          121 ------RN-FL-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       121 ------~~-F~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                            .. .. .+++  .+....--|......|.-....   ..|+......-.|+.-|-.|.-++|..|
T Consensus        71 ~~~~s~i~~~~~~~~~~e~l~~~l~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~e~ek~~w~l~~~l  141 (142)
T 1ji5_A           71 YLEISSIQEAAYGETAEGMVEAIMKDYEMMLVELKKGMEIAQNSDDEMTSDLLLGIYTELEKHAWMLRAFL  141 (142)
T ss_dssp             HHHHCCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  10 00 1122  4444444444555555544433   2455555666666666666666666554

>3q4o_A Uncharacterized protein MJ0754; ferritin-like protein, four-helix bundle, metal binding, DIN center, unknown function; HET: B3P; 1.34A {Methanocaldococcus jannaschii} PDB: 3q4q_A* 3q4r_A* 3q4n_A

Probab=90.52  E-value=1.7  Score=38.23  Aligned_cols=139  Identities=10%  Similarity=0.032  Sum_probs=97.2

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc--CCc-
Q 044495           42 PLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK--VCA-  118 (276)
Q Consensus        42 ~~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg--~~P-  118 (276)
                      +.+..+.+-|-|++-=|||--++|.....-+|                ...+..|+.-|..|...   ++..+.  ++| 
T Consensus        23 ~Ls~~E~~~Ll~m~EEEklArdvY~~l~e~~g----------------~~~F~NIa~SEq~H~da---l~~Ll~rYgl~~   83 (196)
T 3q4o_A           23 PISEEEKEGLIEMREEEKLARDVYLTLYNKWK----------------LQIFKNIAESEQTHMDA---VKYLLEKYNIPD   83 (196)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHH---HHHHHHHTTCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----------------CchHHHHHHHHHHHHHH---HHHHHHHhCCCC
Confidence            46667889999999999999999987642222                24688899999999999   777776  544 


Q ss_pred             -C----CCCCCCch------H-----------HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHH
Q 044495          119 -S----SRNFLPSA------P-----------IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVRE  176 (276)
Q Consensus       119 -~----~~~F~~~d------p-----------fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~  176 (276)
                       .    .+.|..-+      -           =+.....+|.+-+.=|.-.....++++++..--.+...-.+|-...+.
T Consensus        84 P~~~~~~G~f~~p~lq~LY~~L~e~G~~S~~dAl~vGa~iEe~dI~dl~~~l~~t~~~Di~~Vy~nL~~gS~nHLrAF~r  163 (196)
T 3q4o_A           84 PVKNDSIGVFSNPKFEELYKKLVEKGDKSEVDALKVGATIEDLDIADLEKWINKTDNEDIKFVYENLMKGSRNHMRAFVR  163 (196)
T ss_dssp             SCSCCSTTCCSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCeeccHhHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence             2    23455221      0           223345666666666777778888999988888887776699777766


Q ss_pred             HhhhccccccCCcchhHHHHhhHh
Q 044495          177 YLFGRADQIVKPYNYTVARMKGFL  200 (276)
Q Consensus       177 lL~~~~~~~v~Py~~Tva~ft~~i  200 (276)
                      .|...+ ....|--++-.+|-.-|
T Consensus       164 ~L~~~G-~~Y~pq~ls~~e~~~i~  186 (196)
T 3q4o_A          164 MLNNYG-SNYTPQYISKEEYEEII  186 (196)
T ss_dssp             HHHHTT-CCCCCSSSCHHHHHHHH
T ss_pred             HHHHCC-CCCCCccCCHHHHHHHH
Confidence            665443 44577777777776444

>2fzf_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.70A {Pyrococcus furiosus} SCOP: a.25.1.1

Probab=89.95  E-value=0.51  Score=38.93  Aligned_cols=54  Identities=20%  Similarity=0.225  Sum_probs=46.1

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH  114 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL  114 (276)
                      ++.++|..|+..|.--.+||...+.            ..-++.++.++.+|+.+|..|.+.   |++.+
T Consensus       105 ~~~~~L~~ai~~E~~a~~~Y~~~a~------------~~~d~~~r~l~~~ia~eE~~H~~~---l~~~l  158 (175)
T 2fzf_A          105 DIIDLIRWAMKAEEIAAEFYLKLEE------------MVKEEEKKRLMRYLADMERGHYYT---LRAEY  158 (175)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH------------TSCSHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHh------------hCCCHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            5789999999999999999998751            224789999999999999999999   66554

>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1

Probab=89.24  E-value=3.3  Score=32.94  Aligned_cols=119  Identities=6%  Similarity=-0.099  Sum_probs=75.5

Q ss_pred             hhHHHHHHHHH---HHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CC---
Q 044495           48 VDNLQFAQSLE---HLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SS---  120 (276)
Q Consensus        48 ~diLNfALnLE---yLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~---  120 (276)
                      ++.||=.|+-|   |+--.-|.+-+.|.|+            ..+...+.+.+.+|..|+.-+.+--..|||.| .+   
T Consensus        10 ~~~LN~~la~e~~~~~~~~~~hw~v~g~~f------------~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~   77 (149)
T 1n1q_A           10 AVLLNRQVANWVVLYVKLHNFHWNVNGPNF------------FTLHEKFEELYTEASGHIDTLAERVLSIGGSPIATLAA   77 (149)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhccchheeCCCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Confidence            57899999999   4444444444555443            35677899999999999998666666788888 11   


Q ss_pred             ------C-CCC-CchH--HHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          121 ------R-NFL-PSAP--IMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       121 ------~-~F~-~~dp--fL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                            . ... .+++  .+....--|...+..|.-+....   .|+......-.|+.-|-.|.-++|+.|
T Consensus        78 ~~~~s~i~~~~~~~~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~ek~~w~l~~~l  148 (149)
T 1n1q_A           78 SLEEASIKEATGGESAAEMVSSVVNDFVDLVGELKVARDVADEADDEATADMLDAIEAGLEKHVWMLEAFL  148 (149)
T ss_dssp             HHHHCCSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  0 111 1233  44444444555555565544432   356666667777777777777777654

>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1

Probab=87.55  E-value=4.9  Score=31.76  Aligned_cols=119  Identities=5%  Similarity=-0.114  Sum_probs=73.2

Q ss_pred             hhHHHHHHHHH---HHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-CC---
Q 044495           48 VDNLQFAQSLE---HLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-SS---  120 (276)
Q Consensus        48 ~diLNfALnLE---yLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~~---  120 (276)
                      ++.||=.|+-|   |+--.-|.+-+.|.|+            ..+...+.+.+.+|..|+.-+.+--..|||.| .+   
T Consensus         7 ~~~LN~~la~~~~~~~~~~~~hw~v~g~~f------------~~lh~~~~~~~~ee~~had~laeri~~lGg~p~~~~~~   74 (146)
T 1jig_A            7 VEVLNKQVANWNVLYVKLHNYHWYVTGPHF------------FTLHEKFEEFYNEAGTYIDELAERILALEGKPLATMKE   74 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhcccCcCH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHH
Confidence            57899999999   4444444444555443            35677899999999999998666666788888 11   


Q ss_pred             ------C-CCC-CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          121 ------R-NFL-PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       121 ------~-~F~-~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                            . ... .+++  .+....--|...+..|.-+...   ..|+......-.|+.-|-.|.-++|+.|
T Consensus        75 ~~~~s~i~~~~~~~~~~e~l~~~l~~e~~~~~~~~~~i~~a~~~~D~~T~~ll~~~l~e~ek~~w~l~~~l  145 (146)
T 1jig_A           75 YLATSSVNEGTSKESAEEMVQTLVNDYSALIQELKEGMEVAGEAGDATSADMLLAIHTTLEQHVWMLSAFL  145 (146)
T ss_dssp             HHHHCCSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHhHCcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                  0 111 1233  4444444444445555544433   2355566666677777777777776654

>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*

Probab=86.19  E-value=6.8  Score=32.39  Aligned_cols=119  Identities=8%  Similarity=-0.173  Sum_probs=78.2

Q ss_pred             hhHHHHHHHHHHHHH---HHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-C----
Q 044495           48 VDNLQFAQSLEHLEA---ELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-S----  119 (276)
Q Consensus        48 ~diLNfALnLEyLEA---~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~----  119 (276)
                      ++.||=+|.-|+.-.   .-|.+-+.|.++            ..+...+.+.+.+|..|+.-+.+--..|||.| .    
T Consensus        30 i~~Ln~~LA~~~~l~~k~~~~hw~v~G~~f------------~~lh~~~ee~~~e~~~~aD~lAERI~~LGg~P~~t~~~   97 (167)
T 3ak8_A           30 VELLNRQVIQFIDLSLITKQAHWNMRGANF------------IAVHEMLDGFRTALTDHLDTMAERAVQLGGVALGTTQV   97 (167)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCBSTTH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhheeECCCh------------HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHH
Confidence            677999999887766   677777766543            35778899999999999999666667799988 1    


Q ss_pred             -----CC-CCC--CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHh
Q 044495          120 -----SR-NFL--PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYL  178 (276)
Q Consensus       120 -----~~-~F~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL  178 (276)
                           .. ..+  ..++  .+..-.--+..-+..|.-+.....|+....+.-.|+.-+-.|.-++|+.|
T Consensus        98 ~~~~s~i~e~~~~~~~~~eml~~~l~~~~~~i~~~r~~i~~a~D~~T~dll~~il~~~Ek~~w~L~a~L  166 (167)
T 3ak8_A           98 INSKTPLKSYPLDIHNVQDHLKELADRYAVVANDVRKAIGEAKDEDTADIFTAASRDLDKFLWFIESNI  166 (167)
T ss_dssp             HHHHCCSCCCCSSCCBHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                 11 111  1232  33333333334444454444444466677777788888888877777654

>1j30_A 144AA long hypothetical rubrerythrin; sulerythrin, sulfolobus tokodaii strain 7, FOU bundle, domain swapping, metal binding site plasticity; 1.70A {Sulfolobus tokodaii} SCOP: a.25.1.1

Probab=85.83  E-value=5  Score=32.10  Aligned_cols=122  Identities=11%  Similarity=-0.013  Sum_probs=86.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc----CCcC-CC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK----VCAS-SR  121 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg----~~P~-~~  121 (276)
                      =.+.||=+++.|.-....|..-+      ....  ..++ +.+..++.+.+.+|..|..-   +-+.|.    |.|. ..
T Consensus         9 ~~~~Ln~a~~~E~~A~~~Y~~~A------~~a~--~~g~-~~~a~~f~~~A~eE~~HA~~---~~~~l~~~~lg~p~~~~   76 (144)
T 1j30_A            9 TAENLKQGFIGESMANRRYLYFA------KRAD--EEGY-PEIAGLLRSIAEGETAHAFG---HLDFIRQGGLTDPATDK   76 (144)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHTC-HHHHHHHHHHHHHHHHHHHH---HHHHHHHTTCBCTTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHH--HCCH-HHHHHHHHHHHHHHHHHHHH---HHHHHhhcccCCCCcCC
Confidence            56889999999999999998643      1100  1233 56888999999999999976   433321    3362 11


Q ss_pred             CCCCchHHHHHHhhcccch-hhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          122 NFLPSAPIMTRYYMVPYVG-LNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       122 ~F~~~dpfL~~A~~lE~vG-vsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      .|.+.--.|..+.-.|.-- ..-|...+.   .-.++.+....-.|+..|..|..+++.+|..
T Consensus        77 p~~~~~e~L~~al~~E~~~~~~~y~~~~~~A~~egd~~~~~~f~~i~~~E~~H~~~~~~~l~~  139 (144)
T 1j30_A           77 PIGTLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQ  139 (144)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2432222777788888777 466665544   4557888888889999999999999998864

>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A

Probab=83.72  E-value=8.5  Score=32.09  Aligned_cols=125  Identities=8%  Similarity=-0.062  Sum_probs=84.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC----
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS----  120 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~----  120 (276)
                      =++.||=.|+.|+--...|..-..     .+.   ..++ +.+..++.+.+.+|..|..-+.+....+||.|  +.    
T Consensus        11 v~~~LN~~la~El~a~~~Yl~~a~-----~~~---~~gf-~~l~~~f~~~a~ee~~Had~laeri~~lGg~p~~~~i~~~   81 (189)
T 3oj5_A           11 FHALMQEQIHNEFTAAQQYVAIAV-----YFD---SEDL-PQLAKHFYSQAVEERNHAMMLVQHLLDRDLRVEIPGVDTV   81 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHc---cCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecCCCCCC
Confidence            467899999999877777764210     000   1222 56788999999999999988666666688887  11    


Q ss_pred             -CCCCCchHHHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          121 -RNFLPSAPIMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       121 -~~F~~~dpfL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                       ..|.+..-.+..+.-.|......|.-...   -..|+......-.|+..|-.|...++.++..
T Consensus        82 ~~~~~~~~e~l~~~l~~E~~~~~~~~~l~~~A~~~~D~~t~~~l~~~l~eqe~~~~~l~~~l~~  145 (189)
T 3oj5_A           82 RNQFDRPREALALALDQERTVTDQVGRLTAVARDEGDFLGEQFMQWFLQEQIEEVALMATLVRV  145 (189)
T ss_dssp             CCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12322222666666666666666665433   3456777777778999999999999988764

>2jd6_0 Ferritin homolog, ferritin; metal transport, iron, pores, archaeon, entry channels, thermostability, hyperthermophIle, ferroxidase center; 2.75A {Pyrococcus furiosus} PDB: 2jd7_0 2jd8_0 2x17_0

Probab=83.42  E-value=8.8  Score=31.22  Aligned_cols=124  Identities=10%  Similarity=0.005  Sum_probs=83.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC-----
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS-----  120 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~-----  120 (276)
                      .+.||=.++.|+--...|..-..     .+.   ..++ +.+..++.+.+.+|..|..-+.+....+||.|  +.     
T Consensus         7 ~~~Ln~~l~~El~a~~~Yl~~a~-----~~~---~~~~-~~l~~~f~~~a~ee~~had~laeri~~lGg~p~~~~i~~~~   77 (174)
T 2jd6_0            7 LKALNDQLNRELYSAYLYFAMAA-----YFE---DLGL-EGFANWMKAQAEEEIGHALRFYNYIYDRNGRVELDEIPKPP   77 (174)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCBCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-----HHh---hCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCCC
Confidence            57899999999877777765321     000   1122 46788999999999999988666666688887  11     


Q ss_pred             CCCCCchHHHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          121 RNFLPSAPIMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       121 ~~F~~~dpfL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      ..|.+..-.+..+.-.|.-....|.-...   -..|+......-.|+.-|-.|..+++.++..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~A~~~~D~~t~~~l~~~l~eq~e~~~~l~~~l~~  140 (174)
T 2jd6_0           78 KEWESPLKAFEAAYEHEKFISKSIYELAALAEEEKDYSTRAFLEWFINEQVEEEASVKKILDK  140 (174)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12332222666666666666666665433   3456767777777888888888888888764

>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}

Probab=82.32  E-value=6.6  Score=30.41  Aligned_cols=61  Identities=13%  Similarity=0.038  Sum_probs=49.1

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcC
Q 044495           44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKV  116 (276)
Q Consensus        44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~  116 (276)
                      ..+..++|..++..|.--.++|....     +. .   ...-|+.++++++.+..+|..|+..   |++.|+.
T Consensus        83 ~~~~~e~l~~~l~~E~~~~~~~~~~~-----~~-a---~~~~D~~t~~~l~~~~~eee~h~~~---l~~~l~~  143 (149)
T 2qqy_A           83 AEDVREMLEYARQSEYETIKRYEKRK-----EQ-A---ANLNMTELVVKLEDMIADETNHMEE---LDRLLND  143 (149)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHHHHHHH-----HH-H---HHTTCHHHHHHHHHHHHHHHHHHHH---HHHHHC-
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH-----HH-H---HHCCCHHHHHHHHHHHHHHHHHHHH---HHHHhcc
Confidence            35778999999999999999999864     10 0   1134889999999999999999999   8888764

>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}

Probab=80.41  E-value=11  Score=31.63  Aligned_cols=123  Identities=5%  Similarity=-0.090  Sum_probs=86.3

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCC-HHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCC------
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLD-NLTRAIITEFGYQEVGHLRCGHALLQCHKVCASS------  120 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~-~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~------  120 (276)
                      ++.||=.|+.|+--..-|.....-          ..+.. ..+...+.+.+.+|..|+.-+.+--..||+.|..      
T Consensus        30 i~~LN~~La~e~~a~~~y~~~hw~----------v~g~~f~~lh~~~~~~~~ee~~had~laErI~~LGg~p~~~~~~~~   99 (192)
T 2vxx_A           30 CEGMNRLLASFQALYLQYQKHHFV----------VEGAEFYPLHQFFQDCYEQVQDHVHALGERLNGLGGVPVAGFQQLA   99 (192)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH----------CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh----------hcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence            688999999998877777654210          11112 4567789999999999999966666678888811      


Q ss_pred             ----C-----CCCCchHHHHHHhhcccchhhhhccccccc---CCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          121 ----R-----NFLPSAPIMTRYYMVPYVGLNGYTGSNPFL---CGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       121 ----~-----~F~~~dpfL~~A~~lE~vGvsAY~Gaap~l---~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                          .     .|.+.+-.+....--|..-+..|.-+....   .|+......-.|+.-|-.|.-+++..|..
T Consensus       100 ~~s~i~e~~~~~~~~~e~l~~~l~~e~~~i~~~~~~i~~a~~~~D~~T~~lL~~~l~eeEkh~w~L~~~L~~  171 (192)
T 2vxx_A          100 ALCCFTPEPEGAFNCRQMLSNDLQAEQAIIGVLRQQATQAESLGDRATAYLYDQILLKTEERAYHIGHFLAN  171 (192)
T ss_dssp             HHCSSCCCCSSBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHCcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                1     122222266666666667777777665543   47777888889999999999999998874

>1jgc_A Bacterioferritin, BFR; iron storage protein, metal binding protein; HET: HEM; 2.60A {Rhodobacter capsulatus} SCOP: a.25.1.1

Probab=80.15  E-value=6.7  Score=30.92  Aligned_cols=59  Identities=17%  Similarity=0.116  Sum_probs=47.5

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK  115 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg  115 (276)
                      .+..++|..++..|.--.++|.....     . .   ...-|+.++++++.|..+|..|+..   |++.|+
T Consensus        81 ~~~~e~l~~~l~~E~~~~~~~~~~~~-----~-a---~~~~D~~t~~~l~~~~~ee~~h~~~---l~~~l~  139 (161)
T 1jgc_A           81 EGPRETLECDLAGEHDALKLYREARD-----Y-C---AEVGDIVSKNIFESLITDEEGHVDF---LETQIS  139 (161)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHHHHHHH-----H-H---HHHTCHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH-----H-H---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            56789999999999999999998641     0 0   1124889999999999999999999   766654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	276
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	99.75
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	98.66
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	98.64
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	98.5
d1nf4a_	169	Bacterioferritin (cytochrome b1) {Desulfovibrio de	96.72
d2ib0a1	142	Hypothetical protein Rv2844 {Mycobacterium tubercu	96.3
d2fkza1	154	Bacterioferritin (cytochrome b1) {Azotobacter vine	96.17
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	95.59
d1jgca_	160	Bacterioferritin (cytochrome b1) {Rhodobacter caps	95.38
d2oh3a1	152	Uncharacterized protein AMB4284 homologue {Magneto	95.32
d1vjxa_	149	Hypothetical protein TM1526 {Thermotoga maritima [	94.85
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	94.36
d2fzfa1	158	Hypothetical protein PF1190 {Archaeon Pyrococcus f	92.8
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	92.6
d1j30a_	141	Hypothetical rubrerythrin {Archaeon Sulfolobus tok	90.7
d1jkva_	266	Manganese catalase (T-catalase) {Lactobacillus pla	84.15
d2htna1	158	Bacterioferritin (cytochrome b1) {Escherichia coli	83.25

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=1.1e-18  Score=141.78  Aligned_cols=125  Identities=14%  Similarity=-0.019  Sum_probs=104.9

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc----CC
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA----SS  120 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P----~~  120 (276)
                      .+|.++||+||++||  +.||.+++.           ...+++.+++++++++.||..|++.|..+-..+|+.|    ..
T Consensus         4 ~~d~~~L~~AL~~E~--aaiy~Y~~a-----------~~~~~~~~~~~~~~~~~~e~~H~~~L~~~i~~lgg~p~~~~~~   70 (142)
T d2ib0a1           4 SADNAALCDALAVEH--ATIYGYGIV-----------SALSPPGVNFLVADALKQHRHRRDDVIVMLSARGVTAPIAAAG   70 (142)
T ss_dssp             HHHHHHHHHHHHHHH--HHHHHHHHH-----------HHHSCGGGHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSS
T ss_pred             chHHHHHHHHHHHHH--HHHHHHHHH-----------hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            469999999999999  668887531           2456888999999999999999999444434566766    33


Q ss_pred             CCCC--CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          121 RNFL--PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       121 ~~F~--~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                      +.|.  ..|+  +|..+..+|..++.+|.++...++|++++.++++|+++||+|++++|..+....
T Consensus        71 ~~~~~~~td~~~~l~~a~~~E~~a~~~Y~~~~~~~~d~~~r~la~~il~~ea~ha~~~r~~~~~~p  136 (142)
T d2ib0a1          71 YQLPMQVSSAADAARLAVRMENDGATAWRAVVEHAETADDRVFASTALTESAVMATRWNRVLGAWP  136 (142)
T ss_dssp             CCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4443  3455  999999999999999999999999999999999999999999999999998765

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.66  E-value=6.5e-08  Score=76.03  Aligned_cols=121  Identities=13%  Similarity=-0.063  Sum_probs=96.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CCC---
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SSR---  121 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~~---  121 (276)
                      =.++|++|+..|+.-.+||...+.            ..-++..++++.+++.+|..|.+.+.++...+++.|  ...   
T Consensus        12 l~e~l~~ai~~E~~a~~~Y~~~a~------------~~~~~~~~~~f~~la~eE~~H~~~~~~~~~~~~~~~~~~~~~~~   79 (158)
T d2fzfa1          12 LEELLGMAIKAEIGAREFYKSLAE------------KIKIEALKEKINWLAEEEKKHEALLRKLYSQMFPGKEVVFPKEH   79 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------------SCCCTTHHHHHHHHHHHTHHHHHHHHHHHHHHSTTCCCCCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------------HCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccchhhh
Confidence            467899999999999999998642            223678999999999999999999444444455443  110   


Q ss_pred             ---C---CC----C-chH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhh
Q 044495          122 ---N---FL----P-SAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLF  179 (276)
Q Consensus       122 ---~---F~----~-~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~  179 (276)
                         .   +.    . .+.  .+..+...|..++..|...+..+.|+..+.+.-.|...|.+|..+++.++.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~a~~~Y~~la~~~~d~~~~~l~~~i~~~E~~H~~~l~~~~d  150 (158)
T d2fzfa1          80 IGPELQPVARELEKVQDIIDLIRWAMKAEEIAAEFYLKLEEMVKEEEKKRLMRYLADMERGHYYTLRAEYE  150 (158)
T ss_dssp             BSCCCCCCCSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhhhHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0   10    1 111  899999999999999999999999999999999999999999999997654

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=98.64  E-value=1.3e-07  Score=74.22  Aligned_cols=125  Identities=14%  Similarity=0.054  Sum_probs=98.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc---CCc----
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK---VCA----  118 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg---~~P----  118 (276)
                      |-.++||.|+.+|.--..||...+.         .....-.+.+++++..++.+|..|...   |.+.+.   +.|    
T Consensus         2 t~~e~L~~Ai~~E~~a~~~Y~~~a~---------~~~~~~~~~~~~~f~~la~eE~~H~~~---l~~~~~~~~~~~~~~~   69 (152)
T d2oh3a1           2 TLAEFLAHAIALETEAAERYVELAD---------MMEAHNNLDTATVFRDMARFSTLHGDE---IKQRSRALELPKLMSW   69 (152)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHTTCHHHHHHHHHHHHHHHHHHHH---HHHHHTTSCCCCCCGG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHH---------HHhhcCHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCCCcchh
Confidence            4578999999999999999987531         011223578999999999999999999   655544   333    


Q ss_pred             -CCCCCC-----------CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          119 -SSRNFL-----------PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       119 -~~~~F~-----------~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                       ....|.           ..|+  .|..|...|..++.-|...+..+.|+.++.+...|...|.+|..+++.++.+-.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~Al~~E~~a~~~Y~~~a~~~~d~~~r~~~~~l~~~E~~H~~~l~~~l~~~~  147 (152)
T d2oh3a1          70 QYRWKTPPEVGDENDIHYLMTPYHALRYARDNEIRGMEYYKEAAANSADPEVKRLGADFAAEEAEHVVALDKWIEKTP  147 (152)
T ss_dssp             GTSCCCCCCSSCC---CGGGSHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             hhccccchhHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence             111111           1223  899999999999999999999999999999999999999999999999887643

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=98.50  E-value=2.1e-07  Score=73.04  Aligned_cols=122  Identities=14%  Similarity=0.005  Sum_probs=96.6

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-------
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-------  118 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-------  118 (276)
                      +-.++|++|+.+|.....||...+             ...++.+++++..++.+|..|...+.++.+.+++.+       
T Consensus         6 ~~~e~l~~Ai~~E~~~~~~Y~~~a-------------~~~~~~~~~~f~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~   72 (149)
T d1vjxa_           6 KVSDILTVAIRLEEEGERFYRELS-------------EHFNGEIKKTFLELADQERIHAEIFRKMSDQENWDEVDSYLAG   72 (149)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHHHHT-------------TSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTCBCCS
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH-------------HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHH
Confidence            356899999999999999999864             123567899999999999999999444444444211       


Q ss_pred             --CCCCCC---------CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          119 --SSRNFL---------PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       119 --~~~~F~---------~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                        ....+.         ..++  .|..|..+|..+..-|...+..+.++.++...-.|...|.+|...++.+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~E~~a~~~Y~~l~~~~~d~~~r~~~~~i~~eE~~H~~~l~~l~~~  147 (149)
T d1vjxa_          73 YAFYEVFPDTSEILRRKDLTLKEVLDIAISVEKDSIILYYELKDGLVNSDAQKTVKKIIDQEKEHLRKLLEMKRE  147 (149)
T ss_dssp             BCCCCCCCCCTTGGGCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence              001111         1223  8888999999999999999999999999999999999999999999987653

>d1nf4a_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Desulfovibrio desulfuricans [TaxId: 876]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=96.72  E-value=0.0031  Score=50.33  Aligned_cols=125  Identities=11%  Similarity=0.017  Sum_probs=94.7

Q ss_pred             hhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CCCCC--
Q 044495           48 VDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SSRNF--  123 (276)
Q Consensus        48 ~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~~~F--  123 (276)
                      ++.||=+|+.|+--...|.....-  ++      ..++ +.+.+.+++.+..|..|..-+...-..+||.|  .....  
T Consensus        10 i~~Ln~~l~~E~~a~~~Y~~~a~~--~~------~~~~-~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~~   80 (169)
T d1nf4a_          10 IEVLNKARAMELHAIHQYMNQHYS--LD------DMDY-GELAANMKLIAIDEMRHAENFAERIKELGGEPTTQKEGKVV   80 (169)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HH------HHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH--Hh------ccCc-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccccccc
Confidence            679999999999999988764210  00      0112 56888999999999999998666666788888  22111  


Q ss_pred             CCchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          124 LPSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       124 ~~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                      ...++  .+..+.-.|.-.+..|......   ..|+......-.|+.-|-.|..++..+|...
T Consensus        81 ~~~~~~e~l~~~l~~E~~~~~~y~~~~~~A~~~~D~~t~~~l~~il~eE~~H~~~~e~~l~~i  143 (169)
T d1nf4a_          81 TGQAVPVIYESDADQEDATIEAYSQFLKVCKEQGDIVTARLFERIIEEEQAHLTYYENIGSHI  143 (169)
T ss_dssp             CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            12333  8888888999999999876654   4588899999999999999999999988753

>d2ib0a1 a.25.1.9 (A:17-158) Hypothetical protein Rv2844 {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Rv2844-like
domain: Hypothetical protein Rv2844
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.30  E-value=0.0099  Score=46.14  Aligned_cols=66  Identities=9%  Similarity=-0.053  Sum_probs=56.8

Q ss_pred             CCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCCC
Q 044495           44 CRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRNF  123 (276)
Q Consensus        44 ~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~F  123 (276)
                      ..++.++|.+++.+|..-..+|...+            ...-|+..+.++..|..+|..|...   +|..+|..|....|
T Consensus        77 ~td~~~~l~~a~~~E~~a~~~Y~~~~------------~~~~d~~~r~la~~il~~ea~ha~~---~r~~~~~~p~~~~f  141 (142)
T d2ib0a1          77 VSSAADAARLAVRMENDGATAWRAVV------------EHAETADDRVFASTALTESAVMATR---WNRVLGAWPITAAF  141 (142)
T ss_dssp             CCSHHHHHHHHHHHHHHHHHHHHHHH------------HHCCSHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCCCCCC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHH------------HhcCCHHHHHHHHHHHHHHHHHHHH---HHHhcCCCCCCCCC
Confidence            34678899999999999999999875            2235889999999999999999999   99999988866666


Q ss_pred             C
Q 044495          124 L  124 (276)
Q Consensus       124 ~  124 (276)
                      +
T Consensus       142 p  142 (142)
T d2ib0a1         142 P  142 (142)
T ss_dssp             C
T ss_pred             C
Confidence            4

>d2fkza1 a.25.1.1 (A:1-154) Bacterioferritin (cytochrome b1) {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.17  E-value=0.02  Score=44.45  Aligned_cols=125  Identities=10%  Similarity=-0.007  Sum_probs=91.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc-C-C-CCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA-S-S-RNF  123 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P-~-~-~~F  123 (276)
                      =++.||-+++.|+--...|.....-     +.   ..++ +.+...+++.+.+|..|..-+...-..+||.| . . ...
T Consensus         7 ii~~Ln~~l~~E~~A~~~Y~~~a~~-----~~---~~~~-~~la~~f~~~a~eE~~Ha~~l~~~i~~lGg~p~~~~~~~~   77 (154)
T d2fkza1           7 VIQHLNKILGNELIAINQYFLHARM-----YE---DWGL-EKLGKHEYHESIDEMKHADKLIKRILFLEGLPNLQELGKL   77 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-----HH---HcCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccccc
Confidence            3789999999999999999875310     00   1112 56778899999999999988555555678877 1 1 111


Q ss_pred             -CCchH--HHHHHhhcccchhhhhcccc---cccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          124 -LPSAP--IMTRYYMVPYVGLNGYTGSN---PFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       124 -~~~dp--fL~~A~~lE~vGvsAY~Gaa---p~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                       ...|+  .+..+.-.|......|.-..   ....|+......-.|+.-|-.|...+++.|..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~y~~~~~~a~~~~D~~t~~~l~~il~eE~~h~~~l~~~L~~  140 (154)
T d2fkza1          78 LIGEHTKEMLECDLKLEQAGLPDLKAAIAYCESVGDYASRELLEDILESEEDHIDWLETQLDL  140 (154)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             12344  77777778877777777444   44678888888899999999999999988774

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.034  Score=43.29  Aligned_cols=126  Identities=10%  Similarity=0.017  Sum_probs=92.1

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CCCCCC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SSRNFL  124 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~~~F~  124 (276)
                      =++.||=+++.|+--...|.....     .+ .  ..++ ..+...+.+.+.+|..|..-+...-..|||.|  ....+.
T Consensus         7 ii~~Ln~~l~~E~~A~~~Y~~~a~-----~~-~--~~~~-~~la~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~   77 (158)
T d2htna1           7 VINYLNKLLGNELVAINQYFLHAR-----MF-K--NWGL-KRLNDVEYHESIDEMKHADRYIERILFLEGLPNLQDLGKL   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HH-H--HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HH-H--cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccc
Confidence            478899999999999999987531     00 0  1122 56778899999999999999666666788888  111111


Q ss_pred             --CchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhhc
Q 044495          125 --PSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFGR  181 (276)
Q Consensus       125 --~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~  181 (276)
                        ..++  .+..+.-.|......|.-....   ..|+......=.|+.-|-.|...++..|...
T Consensus        78 ~~~~~~~~~l~~~~~~e~~~~~~~~~~~~~a~~~~D~~t~~~l~~il~eee~h~~~l~~~L~~~  141 (158)
T d2htna1          78 NIGEDVEEMLRSDLALELDGAKNLREAIGYADSVHDYVSRDMMIEILRDEEGHIDWLETELDLI  141 (158)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1222  7777777888878888655554   4588888888899999999999999888743

>d1jgca_ a.25.1.1 (A:) Bacterioferritin (cytochrome b1) {Rhodobacter capsulatus [TaxId: 1061]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.38  E-value=0.056  Score=42.37  Aligned_cols=125  Identities=13%  Similarity=0.022  Sum_probs=92.5

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCc--CC--CC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCA--SS--RN  122 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P--~~--~~  122 (276)
                      =++.||-+|+.|+--...|.+...     .+.   ..++ +.+...+.+.+.+|..|..-+...-..+||.|  ..  +.
T Consensus         7 vi~~LN~~l~~E~~a~~~Y~~~a~-----~~~---~~~~-~~l~~~f~~~a~eE~~Ha~~l~eri~~lGg~p~~~~~~~~   77 (160)
T d1jgca_           7 VIEFLNAALRSELTAISQYWVHFR-----LQE---DWGL-AKMAKKSREESIEEMGHADKIIARILFLEGHPNLQKLDPL   77 (160)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----HHH---HTTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHh---cCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcccccccc
Confidence            478899999999999988887531     000   0112 56778899999999999988555555678887  11  11


Q ss_pred             CCCchH--HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          123 FLPSAP--IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       123 F~~~dp--fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                      ....||  +|..+.-.|.-.+..|......   ..|+......=.|+.-|-.|..++.+.|..
T Consensus        78 ~~~~~~~e~l~~~l~~E~~~~~~~~~~~~~a~~~~D~~t~~~l~~~l~eee~h~~~l~~~l~~  140 (160)
T d1jgca_          78 RIGEGPRETLECDLAGEHDALKLYREARDYCAEVGDIVSKNIFESLITDEEGHVDFLETQISL  140 (160)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            123455  8888889999999999877765   457777788889999999999999877653

>d2oh3a1 a.25.1.8 (A:3-154) Uncharacterized protein AMB4284 homologue {Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: AMB4284-like
domain: Uncharacterized protein AMB4284 homologue
species: Magnetospirillum magnetotacticum ms-1 [TaxId: 272627]

Probab=95.32  E-value=0.017  Score=43.80  Aligned_cols=60  Identities=15%  Similarity=0.162  Sum_probs=50.7

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCC
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVC  117 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~  117 (276)
                      ...++.++|++|+-.|.-=-+||.+.+            ...-|+.++.++.+|+.+|..|+..   |++.+...
T Consensus        87 ~~~~~~~~l~~Al~~E~~a~~~Y~~~a------------~~~~d~~~r~~~~~l~~~E~~H~~~---l~~~l~~~  146 (152)
T d2oh3a1          87 YLMTPYHALRYARDNEIRGMEYYKEAA------------ANSADPEVKRLGADFAAEEAEHVVA---LDKWIEKT  146 (152)
T ss_dssp             GGGSHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHS
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHHHH------------HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHHhc
Confidence            344688999999999999999999864            1234899999999999999999999   88887743

>d1vjxa_ a.25.1.1 (A:) Hypothetical protein TM1526 {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein TM1526
species: Thermotoga maritima [TaxId: 2336]

Probab=94.85  E-value=0.028  Score=42.61  Aligned_cols=56  Identities=21%  Similarity=0.121  Sum_probs=47.6

Q ss_pred             CCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh
Q 044495           43 LCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC  113 (276)
Q Consensus        43 ~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a  113 (276)
                      ...++.++|+.|+..|..-..||...+            ....+|.+++++..|+.+|..|++.   |++.
T Consensus        89 ~~~~~~~~l~~ai~~E~~a~~~Y~~l~------------~~~~d~~~r~~~~~i~~eE~~H~~~---l~~l  144 (149)
T d1vjxa_          89 KDLTLKEVLDIAISVEKDSIILYYELK------------DGLVNSDAQKTVKKIIDQEKEHLRK---LLEM  144 (149)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHHHHHHH------------HHCCSHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHH------------HHCCCHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence            445788999999999999999998764            2335899999999999999999999   6554

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=94.36  E-value=0.1  Score=39.99  Aligned_cols=125  Identities=13%  Similarity=-0.013  Sum_probs=88.9

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHh---hcCCcC---C
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQC---HKVCAS---S  120 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~a---Lg~~P~---~  120 (276)
                      =.+.||-|+.-|+-...-|..-+.      ...  ..++ +.+...+..++.+|..|..-   |.+.   +|+.|.   .
T Consensus         8 t~~~L~~a~~~E~~A~~~Y~~~A~------~a~--~~g~-~~ia~~f~~~A~eE~~HA~~---l~~~l~~lg~~p~~~~~   75 (146)
T d1lkoa1           8 TEKNILTAFAGESQARNRYNYFGG------QAK--KDGF-VQISDIFAETADQEREHAKR---LFKFLEGGDLEIVAAFP   75 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------HHH--HTTC-HHHHHHHHHHHHHHHHHHHH---HHHHCCSSCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HHH--HCCc-HHHHHHHHHHHHHHHHHHHH---HHHHHHccCCCcCCCCC
Confidence            467899999999999999987421      000  1122 67888999999999999988   5555   456661   1


Q ss_pred             CCCCCchH--HHHHHhhcccchhhhhccccc---ccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhccc
Q 044495          121 RNFLPSAP--IMTRYYMVPYVGLNGYTGSNP---FLCGYLAKRLAAGLLSPESGQDRIVREYLFGRAD  183 (276)
Q Consensus       121 ~~F~~~dp--fL~~A~~lE~vGvsAY~Gaap---~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~~  183 (276)
                      +.....++  ++..+..-|.--+..|.-.+.   ...++.+....-.|+..|-+|+..++.++..-.+
T Consensus        76 ~~~~~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~~~~D~~~~~~f~~i~~~E~~H~~~f~~~l~~l~~  143 (146)
T d1lkoa1          76 AGIIADTHANLIASAAGEHHEYTEMYPSFARIAREEGYEEIARVFASIAVAEEFHEKRFLDFARNIKE  143 (146)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            22223333  666666666666777775555   4578888999999999999999999998876443

>d2fzfa1 a.25.1.1 (A:10-167) Hypothetical protein PF1190 {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical protein PF1190
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=92.80  E-value=0.087  Score=39.73  Aligned_cols=55  Identities=20%  Similarity=0.230  Sum_probs=46.6

Q ss_pred             CCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhh
Q 044495           45 RDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCH  114 (276)
Q Consensus        45 ~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aL  114 (276)
                      .+..++|..|+..|.--.+||...+.            ...|+.+++++..|+.+|..|+..   |++.+
T Consensus        95 ~~~~~~l~~a~~~E~~a~~~Y~~la~------------~~~d~~~~~l~~~i~~~E~~H~~~---l~~~~  149 (158)
T d2fzfa1          95 QDIIDLIRWAMKAEEIAAEFYLKLEE------------MVKEEEKKRLMRYLADMERGHYYT---LRAEY  149 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH------------TSCSHHHHHHHHHHHHHHHHHHHH---HHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHH------------hcCcHHHHHHHHHHHHHHHHHHHH---HHHHH
Confidence            35778999999999999999998642            235899999999999999999999   76554

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=92.60  E-value=0.38  Score=36.08  Aligned_cols=119  Identities=12%  Similarity=-0.046  Sum_probs=78.7

Q ss_pred             CchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcC-----C
Q 044495           46 DDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCAS-----S  120 (276)
Q Consensus        46 ~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~-----~  120 (276)
                      +=++.||-|++.|+--..-|+.-+.      ...  ..+ -+.+...+.+++..|..|...+-.+-..+|+.|.     .
T Consensus         6 ~t~e~L~~a~~~E~~A~~~Yl~~A~------~~~--~~g-~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~   76 (135)
T d1yuza1           6 STLENLKAAIAGETGAHAKYTAFAK------AAR--EQG-YEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAA   76 (135)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHH------HHH--HTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHh--HCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccc
Confidence            3488999999999999999976431      000  112 2678889999999999999884444455667661     1


Q ss_pred             CCCCCchH-HHHHHhhcccchhhhhcccccc---cCCHHHHHHHHhhhhhhhhhhHH
Q 044495          121 RNFLPSAP-IMTRYYMVPYVGLNGYTGSNPF---LCGYLAKRLAAGLLSPESGQDRI  173 (276)
Q Consensus       121 ~~F~~~dp-fL~~A~~lE~vGvsAY~Gaap~---l~~~~~l~aAa~IlsVEArHaa~  173 (276)
                      +....... .+.....-|.--+..|......   ..++.....--.|+..|-.|+-.
T Consensus        77 ~~~~~~~~~L~~~~~~ee~e~~~~Y~~~~~~A~~~~d~~~~~~f~~i~~~E~~H~e~  133 (135)
T d1yuza1          77 PSAYSCDLNLISGANGEIYETSDMYPAFIRKAQEEGNSKAVHVFTRAKLAESVHAER  133 (135)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence            11111111 3333333344456667666554   45888888888999999999864

>d1j30a_ a.25.1.1 (A:) Hypothetical rubrerythrin {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Hypothetical rubrerythrin
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=90.70  E-value=0.83  Score=34.19  Aligned_cols=125  Identities=11%  Similarity=-0.013  Sum_probs=80.6

Q ss_pred             chhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhcCCcCCCC--CC
Q 044495           47 DVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHKVCASSRN--FL  124 (276)
Q Consensus        47 D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg~~P~~~~--F~  124 (276)
                      =.+.||=|++-|+-...-|..-+      ....  ..++ +.+...+.+++.+|..|..-+..+-..+|+.|....  +.
T Consensus         7 t~~~L~~a~~~E~~A~~~Y~~~a------~~a~--~~g~-~~iA~~f~~~A~eE~~HA~~~~~~i~~lg~~p~~~~~~~~   77 (141)
T d1j30a_           7 TAENLKQGFIGESMANRRYLYFA------KRAD--EEGY-PEIAGLLRSIAEGETAHAFGHLDFIRQGGLTDPATDKPIG   77 (141)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------HHHH--HHTC-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCTTTSCBCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------HHHH--HCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcCcC
Confidence            35789999999999999998742      1110  1222 578889999999999999773333334667772211  21


Q ss_pred             -CchHHHHHHhhcccchh---hhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhh
Q 044495          125 -PSAPIMTRYYMVPYVGL---NGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFG  180 (276)
Q Consensus       125 -~~dpfL~~A~~lE~vGv---sAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~  180 (276)
                       ..+.......--+.--.   ..|...+....++.+...--.|+..|-.|+.+++.+|..
T Consensus        78 ~~~~~l~~~~~~e~~e~~~~y~~~~~~A~~e~d~~~~~~~~~i~~~E~~H~~~f~~~l~~  137 (141)
T d1j30a_          78 TLEQMIESAIAGETYEWTQMYPGFAKVAREEGFPEVAEWFETLARAEKSHAEKFQNVLKQ  137 (141)
T ss_dssp             SHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             11111111111111122   234455666788999999999999999999999998864

>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Lactobacillus plantarum [TaxId: 1590]

Probab=84.15  E-value=1.8  Score=37.49  Aligned_cols=97  Identities=7%  Similarity=-0.051  Sum_probs=74.0

Q ss_pred             CHHHHHHHHHHHHhhhhhhHhhHHhHHhhc-CC---------------------c--------------C-CCCCC----
Q 044495           86 DNLTRAIITEFGYQEVGHLRCGHALLQCHK-VC---------------------A--------------S-SRNFL----  124 (276)
Q Consensus        86 ~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg-~~---------------------P--------------~-~~~F~----  124 (276)
                      ...+++++.+|+..|.+|++.+..+-..|. +.                     |              + ...|+    
T Consensus        52 ~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~~~G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv  131 (266)
T d1jkva_          52 AEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYV  131 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHHHSCHHHHHTTSSCCCSBCTTCCBCBGGGC
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHhcCCCcceeeeccCcccccCCCCCCCCcccc
Confidence            356899999999999999998555554441 11                     1              0 01132    


Q ss_pred             --CchH--HHHHHhhcccchhhhhcccccccCCHHHHHHHHhhhhhhhhhhHHHHHHhhhcc
Q 044495          125 --PSAP--IMTRYYMVPYVGLNGYTGSNPFLCGYLAKRLAAGLLSPESGQDRIVREYLFGRA  182 (276)
Q Consensus       125 --~~dp--fL~~A~~lE~vGvsAY~Gaap~l~~~~~l~aAa~IlsVEArHaa~IR~lL~~~~  182 (276)
                        .-|+  =|..-...|.-+..-|.-....++|+.++..-.-|+.=|-.|....+.+|.+-.
T Consensus       132 ~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~tdDp~vk~~L~fL~~rE~~H~~~f~~aLe~l~  193 (266)
T d1jkva_         132 TSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELE  193 (266)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence              2333  466667788999999999999999999999999999999999999888887654

>d2htna1 a.25.1.1 (A:1-158) Bacterioferritin (cytochrome b1) {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Bacterioferritin (cytochrome b1)
species: Escherichia coli [TaxId: 562]

Probab=83.25  E-value=2.1  Score=32.38  Aligned_cols=62  Identities=21%  Similarity=0.114  Sum_probs=49.3

Q ss_pred             CCCCCchhHHHHHHHHHHHHHHHHhccccCCCcccchhhhhccCCHHHHHHHHHHHHhhhhhhHhhHHhHHhhc
Q 044495           42 PLCRDDVDNLQFAQSLEHLEAELFLGGGLGYGLDKVAPYLKANLDNLTRAIITEFGYQEVGHLRCGHALLQCHK  115 (276)
Q Consensus        42 ~~~~~D~diLNfALnLEyLEA~FY~~a~~G~gL~~~~~~~~a~l~~~~~~~~~eia~~E~~Hv~~~~~L~~aLg  115 (276)
                      ....+-.++|..++..|.-..+.|.....      ..   ...-|+.+++++++|..+|..|+.+   |++.|+
T Consensus        78 ~~~~~~~~~l~~~~~~e~~~~~~~~~~~~------~a---~~~~D~~t~~~l~~il~eee~h~~~---l~~~L~  139 (158)
T d2htna1          78 NIGEDVEEMLRSDLALELDGAKNLREAIG------YA---DSVHDYVSRDMMIEILRDEEGHIDW---LETELD  139 (158)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHHHHH------HH---HHTTCHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHHHHH------HH---HHcCCHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence            34456789999999999999999987531      00   1223899999999999999999999   887776