Citrus Sinensis ID: 044509

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320---
Protein Sequence
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Secondary Structure (PSIPRED)
cEEcccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccEEEEEEEHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHEEEEEccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHEEEEEEc
Secondary Structure Prediction (SSPRO)
ccEHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHcccccEEEccEEEEEccccccHHHHHHHEEEEEHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHEEEEEEEEEEc
Coil and Loop (DISEMBL)
miltgfiltpgidilsipyalssggWLSLIILVLIAATACFTALLLRqcmdkdpdtiTSYIDIVghafghkdekdvphfdlklgkltidgRHAFVVLGGVMilptmwlndlGILSFVSAGGVLSSIIVTVCAFCvgatkgvgfhgkrrlfnlngipttlslYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYgqnvqsqitlnlpieqvsSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Flexible Loop (DISEMBL)
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATkgvgfhgkrRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Low Complexity Region (SEG)
MILTGFILTPGIDILSIPYAlssggwlsliilvliAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMsllvstvvlatvFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Disordered region (IsUnstruct)
*ILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLL*
Disordered Region (DISOPRED)
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Disordered Region (DISEMBL)
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Disordered Region (DISPRO)
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	323	2.2.26 [Sep-21-2011]
P47082	602	Vacuolar amino acid trans	yes	no	0.897	0.481	0.25	2e-12
Q6DIV6	518	Vesicular inhibitory amin	yes	no	0.873	0.544	0.2	1e-08
Q6PF45	518	Vesicular inhibitory amin	N/A	no	0.873	0.544	0.191	3e-07
Q9FKS8	446	Lysine histidine transpor	no	no	0.894	0.647	0.204	1e-06
O22719	451	Lysine histidine transpor	no	no	0.947	0.678	0.199	3e-06
P34579	486	Vesicular GABA transporte	yes	no	0.904	0.600	0.218	7e-06
Q7Z2H8	476	Proton-coupled amino acid	yes	no	0.380	0.258	0.328	2e-05
Q9H598	525	Vesicular inhibitory amin	no	no	0.860	0.529	0.189	9e-05
O35458	525	Vesicular inhibitory amin	yes	no	0.860	0.529	0.189	0.0001
Q495M3	483	Proton-coupled amino acid	no	no	0.442	0.296	0.296	0.0001

>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 160/352 (45%), Gaps = 62/352 (17%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACF-TALLLRQCMDKDPDTITSYIDIVGHAFG 69
           GI +L++P  L   GW+  + ++ I A A F TA LL +C+D DP T+ SY D+   AFG
Sbjct: 223 GIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDP-TLISYADLGYAAFG 281

Query: 70  HKDEK--------DVPHFDLKLGKLTIDGRHA---------FVVLGGVMILPTMWLNDLG 112
            K           D+    + L  L  D  +A         F ++   ++ P +++  L 
Sbjct: 282 TKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTFFKIVSFFIVTPPVFI-PLS 340

Query: 113 ILSFVSAGGVLSS----IIVTVCAFCVGATKGV---GFHGKRRLFNLNGIPTTLSLYTFC 165
           +LS +S  G+LS+    +++  C     ++ G             +L  +  ++ L + C
Sbjct: 341 VLSNISLLGILSTTGTVLVICCCGLYKSSSPGSLVNPMETSMWPIDLKHLCLSIGLLSAC 400

Query: 166 YGAHHV-----------------LLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPI 208
           +G H V                 L  ++ I ++T +  AV+G+L++G  V+ +IT N+ +
Sbjct: 401 WGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGTAVIGFLMFGNLVKDEITKNVLL 460

Query: 209 EQVSSKV------AIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMS-- 260
            +   K       A+ TI+  PIAK  L    I + ++  ++  + D  +++I  R +  
Sbjct: 461 TEGYPKFVYGLISALMTII--PIAKTPLNARPIVSVLDVLMNVQHIDEAASAIKRRAAKG 518

Query: 261 --------LLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304
                   + V  V++A  FP F  + + +GA L   +  +LPC  YL + +
Sbjct: 519 LQVFNRIFINVVFVLIAINFPEFDKIIAFLGAGLCFTICLILPCWFYLRLCK 570

Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1

 Score = 60.8 bits (146), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 72/360 (20%), Positives = 147/360 (40%), Gaps = 78/360 (21%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCM---DKDPDTI---TSYIDIV 64
           G+ +L +PYA+  GG+L L +++  A   C+T  +L  C+   ++D +T+    SY+DI 
Sbjct: 124 GMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGETVRVRDSYVDIA 183

Query: 65  GHAFGHKDEKDVPHFDLKLGKLTID-------------------------------GRHA 93
                       P F  KLG   ++                                + +
Sbjct: 184 NACCA-------PRFP-KLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPSLPISQKS 235

Query: 94  FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVC--AFCVGATKGVGFHGKRRLFN 151
           + ++   M+LP  +L +L  +S  S    L+  ++ V   A+C+   +   +   +   +
Sbjct: 236 WSIIATAMLLPCAFLKNLKAVSKFSLLCTLAHFVINVLVIAYCLSRARDWAWDKVKFYID 295

Query: 152 LNGIPTTLSLYTFCYGA-----------------HHVLLLSFVICTITYLTMAVLGYLIY 194
           +   P ++ +  F Y +                 H ++  + +   I     A++ YL +
Sbjct: 296 VKKFPISIGIIVFSYTSQIFLPSLEGNMQSPKEFHCMMNWTHIAACILKGLFALVAYLTW 355

Query: 195 GQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQL-----SASYKD 249
               +  IT NLP   + + V ++ ++A  +  Y L   +    +E+ L      A + +
Sbjct: 356 ADETKEVITDNLP-STIRAVVNLF-LVAKALLSYPLPFFAAVEVLEKSLFQEGARAFFPN 413

Query: 250 C-------RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNI 302
           C       +S  + +R +L+V T+++A   P F  +  L G+     + FLLP + +L +
Sbjct: 414 CYGGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLKL 473

Involved in the uptake of GABA and glycine into the synaptic vesicles.

Xenopus tropicalis (taxid: 8364)

>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 69/360 (19%), Positives = 147/360 (40%), Gaps = 78/360 (21%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCM---DKDPDTI---TSYIDIV 64
           G+ +L +PYA+  GG+L L +++  A   C+T  +L  C+   ++D +T+    SY+DI 
Sbjct: 124 GMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGETVRVRDSYVDIA 183

Query: 65  GHAFGHKDEKDVPHFDLKLGKLTID-------------------------------GRHA 93
                       P F  KLG   ++                                + +
Sbjct: 184 NACCA-------PRFP-KLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPNLPISQKS 235

Query: 94  FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT--VCAFCVGATKGVGFHGKRRLFN 151
           + ++   ++LP  +L +L  +S  S    ++  ++   V A+C+   +   +   +   +
Sbjct: 236 WSIMATAVLLPCAFLKNLKAVSKFSLLCTVAHFVINILVIAYCLSRARDWAWDKVKFYID 295

Query: 152 LNGIPTTLSLYTFCYGA-----------------HHVLLLSFVICTITYLTMAVLGYLIY 194
           +   P ++ +  F Y +                 H ++  + +   I     A++ YL +
Sbjct: 296 VKKFPISIGIIVFSYTSQIFLPSLEGNMQSPREFHCMMNWTHIAACILKGLFALVAYLTW 355

Query: 195 GQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQL-----SASYKD 249
               +  IT NLP   + + V ++ +++  +  Y L   +    +E+ L      A + +
Sbjct: 356 ADETKEVITDNLP-STIRAVVNLF-LVSKALLSYPLPFFAAVEVLEKSLFQEGARAFFPN 413

Query: 250 C-------RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNI 302
           C       +S  + +R +L+V T+++A   P F  +  L G+     + FLLP + +L +
Sbjct: 414 CYGGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSLFHLKL 473

Involved in the uptake of GABA and glycine into the synaptic vesicles.

Xenopus laevis (taxid: 8355)

>sp|Q9FKS8|LHT1_ARATH Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/357 (20%), Positives = 134/357 (37%), Gaps = 68/357 (19%)

Query: 11  GIDILSIPYALSSGGW-LSLIILVLIAATACFTALLLRQCMDKDP-DTITSYIDIVGHAF 68
           G  +L +PYA+S  GW   + +LVL      +T   + +  +  P      Y ++  HAF
Sbjct: 51  GAGVLGLPYAMSQLGWGPGIAVLVLSWVITLYTLWQMVEMHEMVPGKRFDRYHELGQHAF 110

Query: 69  GHK------------------------DEKDVPHF------DLKLGKLTIDGRHAFVVLG 98
           G K                          K +  F      D K  KLT      F+++ 
Sbjct: 111 GEKLGLYIVVPQQLIVEIGVCIVYMVTGGKSLKKFHELVCDDCKPIKLTY-----FIMIF 165

Query: 99  GVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGV------GFHGKRRLFNL 152
             +      L +   +S VS    + S+  +  A+   A+KGV      G+  K     +
Sbjct: 166 ASVHFVLSHLPNFNSISGVSLAAAVMSLSYSTIAWASSASKGVQEDVQYGYKAKTTAGTV 225

Query: 153 NGIPTTLSLYTFCYGAHHVLL-----------------------LSFVICTITYLTMAVL 189
               + L    F Y  H+V+L                       +++++  + Y  +A++
Sbjct: 226 FNFFSGLGDVAFAYAGHNVVLEIQATIPSTPEKPSKGPMWRGVIVAYIVVALCYFPVALV 285

Query: 190 GYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQL--SASY 247
           GY I+G  V+  I ++L         A   ++   I  Y +  M +   +E  L    ++
Sbjct: 286 GYYIFGNGVEDNILMSLKKPAWLIATANIFVVIHVIGSYQIYAMPVFDMMETLLVKKLNF 345

Query: 248 KDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304
           +   +    +R   + +T+ +   FP F  + +  G F     ++ LPCV +L I +
Sbjct: 346 RPTTTLRFFVRNFYVAATMFVGMTFPFFGGLLAFFGGFAFAPTTYFLPCVIWLAIYK 402

Amino acid-proton symporter. Transporter with a broad specificity for histidine, lysine, glutamic acid, alanine, serine, proline and glycine. Involved in both apoplastic transport of amino acids in leaves and their uptake by roots.

Arabidopsis thaliana (taxid: 3702)

>sp|O22719|LHTL3_ARATH Lysine histidine transporter-like 3 OS=Arabidopsis thaliana GN=At1g61270 PE=3 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/386 (19%), Positives = 151/386 (39%), Gaps = 80/386 (20%)

Query: 11  GIDILSIPYALSSGGW-LSLIILVLIAATACFTALLLRQCMDK-DPDTITSYIDIVGHAF 68
           G  +L +PYA+S  GW   +++L+L      +T   + +  +  +      Y ++   AF
Sbjct: 51  GAGVLGLPYAMSELGWGPGVVVLILSWVITLYTFWQMIEMHEMFEGKRFDRYHELGQAAF 110

Query: 69  GHK---------------------------DEKDVPHF---DLKLGKLTIDGRHAFVVLG 98
           G K                             K +      D +  KL +  RH  ++  
Sbjct: 111 GKKLGLYIVVPLQLLVETSACIVYMVTGGESLKKIHQLSVGDYECRKLKV--RHFILIFA 168

Query: 99  GVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVG----FHGKRRLFNLNG 154
               + ++ L +   +S VS    + S+  +  A+    TKGV     +  KRR  N   
Sbjct: 169 SSQFVLSL-LKNFNSISGVSLVAAVMSMSYSTIAWVASLTKGVANNVEYGYKRR--NNTS 225

Query: 155 IP----TTLSLYTFCYGAHHVLL-----------------------LSFVICTITYLTMA 187
           +P      L    F Y  H+V+L                       ++++I    Y  +A
Sbjct: 226 VPLAFLGALGEMAFAYAGHNVVLEIQATIPSTPENPSKRPMWKGAIVAYIIVAFCYFPVA 285

Query: 188 VLGYLIYGQNVQSQITLNLPIEQ---VSSKVAIYTILAGPIAKYALTVMSIATAIERQLS 244
           ++G+  +G NV+  I   L   +   + + + +   L G    YA+ V  +  ++  +  
Sbjct: 286 LVGFWTFGNNVEENILKTLRGPKGLIIVANIFVIIHLMGSYQVYAMPVFDMIESVMIK-K 344

Query: 245 ASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304
             +   R     IR + + +T+ +A   P F ++ S  G F+    ++ +PC+ +L + +
Sbjct: 345 WHFSPTRVLRFTIRWTFVAATMGIAVALPHFSALLSFFGGFIFAPTTYFIPCIIWLILKK 404

Query: 305 VYR-------NWGYELIGILAIMLLA 323
             R       NW   ++G+L +M++A
Sbjct: 405 PKRFSLSWCINWICIILGVL-VMIIA 429

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 140/343 (40%), Gaps = 51/343 (14%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMD----KDPDTITSYIDIVGH 66
           G+ I+ +P A+  GGW S+  +V +A    +T +LL +C+     K   T     D    
Sbjct: 104 GMFIVGLPIAVKVGGWWSIGAMVGVAYVCYWTGVLLIECLYENGVKKRKTYREIADFYKP 163

Query: 67  AFGHKDEKD-------------VPHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGI 113
            FG                   V   DL         +  ++++    +L   +L+DL I
Sbjct: 164 GFGKWVLAAQLTELLSTCIIYLVLAADLLQSCFPSVDKAGWMMITSASLLTCSFLDDLQI 223

Query: 114 LSFVSAGGVLSSIIVTVCA--FCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH-- 169
           +S +S    +S +IV +    +C+       F       N+N +PT + +  F Y +H  
Sbjct: 224 VSRLSFFNAISHLIVNLIMVLYCLSFVSQWSFSTITFSLNINTLPTIVGMVVFGYTSHIF 283

Query: 170 --------------HVLL-LSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSK 214
                         +V+L  S +   +  +   +LG+L +G+  Q +I+ +LP +  S K
Sbjct: 284 LPNLEGNMKNPAQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEEISNSLPNQ--SFK 341

Query: 215 VAIYTILA-GPIAKYALTVMSIATAIERQLSASY------------KDCRSASILIRMSL 261
           + +  IL    +  Y L   +    ++  L   Y            K  R  ++ +R+ L
Sbjct: 342 ILVNLILVVKALLSYPLPFYAAVQLLKNNLFLGYPQTPFTSCYSPDKSLREWAVTLRIIL 401

Query: 262 LVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304
           ++ T+ +A   P    +  L+G     ++SF+ P + +L I E
Sbjct: 402 VLFTLFVALSVPYLVELMGLVGNITGTMLSFIWPALFHLYIKE 444

Involved in the uptake of GABA into the synaptic vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q7Z2H8|S36A1_HUMAN Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 5/128 (3%)

Query: 171 VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVA-IYTILAGPIAKYA 229
           +L L  VI TI Y+++  LGYL +G N+Q  ITLNLP   +   V  +Y+I  G    YA
Sbjct: 291 ILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSI--GIFFTYA 348

Query: 230 LTVMSIAT-AIERQLSASYKDCR-SASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLK 287
           L     A   I   +S + + C     + +R  L+  T +LA + P    V SL+G+   
Sbjct: 349 LQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSS 408

Query: 288 VVVSFLLP 295
             ++ ++P
Sbjct: 409 SALALIIP 416

Neutral amino acid/proton symporter. Has a pH-dependent electrogenic transport activity for small amino acids such as glycine, alanine and proline. Besides small apolar L-amino acids, it also recognize their D-enantiomers and selected amino acid derivatives such as gamma-aminobutyric acid.

Homo sapiens (taxid: 9606)

>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 141/354 (39%), Gaps = 76/354 (21%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCM---DKDPDTI---TSYIDIV 64
           G+ +L +PYA+  GG+L L +++  A   C+T  +L  C+   ++D + +    SY+ I 
Sbjct: 131 GMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIA 190

Query: 65  GHAFGHKDEKDVPHFDLKLGKLT-----------------IDG-------------RHAF 94
                       P F    G++                  + G             + ++
Sbjct: 191 NACCA-------PRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSW 243

Query: 95  VVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT--VCAFCVGATKGVGFHGKRRLFNL 152
            ++   ++LP  +L +L  +S  S    L+  ++   V A+C+   +   +   +   ++
Sbjct: 244 SIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDV 303

Query: 153 NGIPTTLSLYTFCYGA-----------------HHVLLLSFVICTITYLTMAVLGYLIYG 195
              P ++ +  F Y +                 H ++  + +   +     A++ YL + 
Sbjct: 304 KKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWA 363

Query: 196 QNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQL-----SASYKDC 250
              +  IT NLP   + + V I+ ++A  +  Y L   +    +E+ L      A +  C
Sbjct: 364 DETKEVITDNLP-GSIRAVVNIF-LVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPAC 421

Query: 251 -------RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCV 297
                  +S  + +R +L+V T+++A   P F  +  L G+     + FLLP +
Sbjct: 422 YSGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSL 475

Involved in the uptake of GABA and glycine into the synaptic vesicles.

Homo sapiens (taxid: 9606)

>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/354 (18%), Positives = 141/354 (39%), Gaps = 76/354 (21%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCM---DKDPDTI---TSYIDIV 64
           G+ +L +PYA+  GG+L L +++  A   C+T  +L  C+   ++D + +    SY+ I 
Sbjct: 131 GMFVLGLPYAILHGGYLGLFLIIFAAVVCCYTGKILIACLYEENEDGEVVRVRDSYVAIA 190

Query: 65  GHAFGHKDEKDVPHFDLKLGKLT-----------------IDG-------------RHAF 94
                       P F    G++                  + G             + ++
Sbjct: 191 NACC-------APRFPTLGGRVVNVAQIIELVMTCILYVVVSGNLMYNSFPGLPVSQKSW 243

Query: 95  VVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT--VCAFCVGATKGVGFHGKRRLFNL 152
            ++   ++LP  +L +L  +S  S    L+  ++   V A+C+   +   +   +   ++
Sbjct: 244 SIIATAVLLPCAFLKNLKAVSKFSLLCTLAHFVINILVIAYCLSRARDWAWEKVKFYIDV 303

Query: 153 NGIPTTLSLYTFCYGA-----------------HHVLLLSFVICTITYLTMAVLGYLIYG 195
              P ++ +  F Y +                 H ++  + +   +     A++ YL + 
Sbjct: 304 KKFPISIGIIVFSYTSQIFLPSLEGNMQQPSEFHCMMNWTHIAACVLKGLFALVAYLTWA 363

Query: 196 QNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQL-----SASYKDC 250
              +  IT NLP   + + V I+ ++A  +  Y L   +    +E+ L      A +  C
Sbjct: 364 DETKEVITDNLP-GSIRAVVNIF-LVAKALLSYPLPFFAAVEVLEKSLFQEGSRAFFPAC 421

Query: 251 -------RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCV 297
                  +S  + +R +L+V T+++A   P F  +  L G+     + FLLP +
Sbjct: 422 YGGDGRLKSWGLTLRCALVVFTLLMAIYVPHFALLMGLTGSLTGAGLCFLLPSL 475

Involved in the uptake of GABA and glycine into the synaptic vesicles.

Rattus norvegicus (taxid: 10116)

>sp|Q495M3|S36A2_HUMAN Proton-coupled amino acid transporter 2 OS=Homo sapiens GN=SLC36A2 PE=1 SV=1

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/155 (29%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 149 LFNLNGIPTTLSLYTFCYGAHH---VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLN 205
           +F+   I   L L      A H   +L L   I T  Y+ MA LGYL +G ++++ I+LN
Sbjct: 273 IFSFESIGVVLPLENKMKNARHFPAILSLGMSIVTSLYIGMAALGYLRFGDDIKASISLN 332

Query: 206 LPIEQVSSKVAIYTILAGPIAKYALTV-----MSIATAIERQLSASYKDCRSASILIRMS 260
           LP   +   V +  I AG +  YAL       + I  AI R    S +      + IR+ 
Sbjct: 333 LPNCWLYQSVKLLYI-AGILCTYALQFYVPAEIIIPFAISR---VSTRWALPLDLSIRLV 388

Query: 261 LLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLP 295
           ++  T +LA + P    V SL+G+     ++ ++P
Sbjct: 389 MVCLTCLLAILIPRLDLVISLVGSVSGTALALIIP 423

Involved in a pH-dependent electrogenic neuronal transport and sequestration of small amino acids. Transports glycine and proline. Inhibited by sarcosine.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
224143853	395	amino acid transporter [Populus trichoca	0.965	0.789	0.602	1e-101
225465048	406	PREDICTED: vacuolar amino acid transport	0.965	0.768	0.452	2e-76
359488998	417	PREDICTED: vacuolar amino acid transport	0.962	0.745	0.459	1e-75
359494481	407	PREDICTED: vacuolar amino acid transport	0.969	0.769	0.434	4e-75
225452805	428	PREDICTED: vacuolar amino acid transport	0.962	0.726	0.456	5e-75
359494485	407	PREDICTED: vacuolar amino acid transport	0.928	0.737	0.431	4e-73
255562864	492	amino acid transporter, putative [Ricinu	0.959	0.630	0.436	1e-72
225465052	404	PREDICTED: vacuolar amino acid transport	0.962	0.769	0.432	1e-72
224112271	412	amino acid transporter [Populus trichoca	0.959	0.752	0.470	4e-72
296082673	450	unnamed protein product [Vitis vinifera]	0.962	0.691	0.432	4e-72

>gi|224143853|ref|XP_002325097.1| amino acid transporter [Populus trichocarpa] gi|222866531|gb|EEF03662.1| amino acid transporter [Populus trichocarpa]

 Score =  375 bits (962), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 215/357 (60%), Positives = 261/357 (73%), Gaps = 45/357 (12%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           GI ILSIPYALS+GGWLSLI+L+LIAA ACFT LL+R+CMD++P+ +TSY DI  HAFG 
Sbjct: 21  GIGILSIPYALSAGGWLSLILLILIAAAACFTGLLMRRCMDRNPN-VTSYSDIASHAFGR 79

Query: 71  KDE---------------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           + +                           K  P+F LKLG L+IDGRH+FV+L G++IL
Sbjct: 80  RGKLVASFFTSLELYFVATGFLIMEGDSLHKLSPNFALKLGSLSIDGRHSFVILSGILIL 139

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           PTMWL++LG++S+VSA GVLSS++V VC  CVG TKGVGFHGK  L NL G+PT LSLY 
Sbjct: 140 PTMWLSNLGVMSYVSACGVLSSLVVVVCVLCVGVTKGVGFHGKGSLINLQGVPTALSLYA 199

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
           FCYGAH                  V+ +SFVICTIT L+MAVLGYLIYGQNVQSQ+TLNL
Sbjct: 200 FCYGAHALFPSIYNSMRKKNQFSKVMFVSFVICTITNLSMAVLGYLIYGQNVQSQVTLNL 259

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           P +++SSK+AIY+ILAGPIAKYALT+  IATAIE  L   Y+D +S  IL+RMSLL+STV
Sbjct: 260 PTQKLSSKIAIYSILAGPIAKYALTITPIATAIESVLPDRYQDSKSIGILVRMSLLISTV 319

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           V+A VFPSFQS+TSL GA L V+VSF LPC  YL I +VY+ WG EL GIL IML++
Sbjct: 320 VMAMVFPSFQSLTSLSGAALIVIVSFFLPCACYLKIFKVYQKWGIELAGILTIMLMS 376

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465048|ref|XP_002265140.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|147833560|emb|CAN75004.1| hypothetical protein VITISV_015127 [Vitis vinifera]

 Score =  291 bits (746), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 162/358 (45%), Positives = 221/358 (61%), Gaps = 46/358 (12%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           GI +L++PYALSSGGWLSLI+  LIA    +T +LL++CM+ DP +I SY+DI   AFG 
Sbjct: 33  GIGLLTVPYALSSGGWLSLILFFLIAIMTFYTGILLKRCMEADP-SIRSYLDIAERAFGM 91

Query: 71  KDE---------------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                             K  P F +KLG+LT DGR +FV++  ++I 
Sbjct: 92  KGRIIVMIIMNSELYLVAIGLLILEGDNLHKLFPKFMIKLGELTADGRQSFVLITALVIF 151

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           P+M L DL ILS+VSA GV S +I+ V  FCVG   GVGFH K  L N+  +PT +SLY 
Sbjct: 152 PSMLLTDLSILSYVSATGVFSCLIILVSIFCVGLFNGVGFHEKGTLLNVKSLPTGVSLYI 211

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
            C+  H                  VLL SFV+ T TYL MA++GYL+YG +V+SQITL+L
Sbjct: 212 VCFAGHPVIPSIYTSMRNTYQFSKVLLFSFVLTTFTYLAMAMVGYLMYGDSVESQITLSL 271

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           P  +V ++VAIYT L  PI +YAL V  +ATAIE  LS +YK+ R+  +LIR+ LL+STV
Sbjct: 272 PTSKVCAEVAIYTTLLIPITRYALMVTPVATAIEGGLSENYKNQRTVRLLIRVGLLISTV 331

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYR-NWGYELIGILAIMLLA 323
           ++A VFP ++S+ +++G+   V  SFLLPC+ YL I+   R  W  E +GI+ I++  
Sbjct: 332 IVAYVFPYYESLMAIVGSIFVVSASFLLPCLCYLRINSDLRWGWNCEQMGIVGILVFG 389

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359488998|ref|XP_003633855.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082909|emb|CBI22210.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (740), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 164/357 (45%), Positives = 220/357 (61%), Gaps = 46/357 (12%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           G+ ILSIPYALSSGGWLSL++L++IA    +T LLLR+CMD  P+ I +Y D+   AFG 
Sbjct: 44  GVGILSIPYALSSGGWLSLVLLLVIATATFYTGLLLRRCMDAHPN-IRTYPDVGERAFGK 102

Query: 71  KD----------------------EKD-----VPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                       E D      P+  L++  L IDGR +F+++ G++IL
Sbjct: 103 KGRLLVSVFMYTELYLVATGFLILEGDNLHNLFPNMGLEIWGLMIDGRQSFIIIVGLVIL 162

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           P++W+N+L ILS++SA GVL+ II+       GA  GVGF  K    N  GIPT +SLY 
Sbjct: 163 PSVWVNNLSILSYISASGVLACIIILGSILWTGAFDGVGFDEKGTSLNWQGIPTAVSLYA 222

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
           FCY AH                 +VLL+ F+ CTITY  MA+LGYL++G NVQSQITLNL
Sbjct: 223 FCYCAHPVFPTLYTSMRKKHQFSNVLLVCFIFCTITYAAMAILGYLMFGSNVQSQITLNL 282

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           PIE++SS++AIYT L  PI+KYAL V  I  A E  L   YK  R  S++IR +L+ ST+
Sbjct: 283 PIEKLSSRIAIYTTLVNPISKYALMVTPIVNATENWLPYYYKK-RPFSLIIRSTLVFSTI 341

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           ++A   P F S+ SL+GA L V  S LLPC+ YL IS +Y  +G EL+ I+ ++L+ 
Sbjct: 342 IVALTVPFFGSLMSLVGALLSVPASILLPCLCYLKISGIYHKFGVELVIIIGVVLMG 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494481|ref|XP_003634786.1| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082671|emb|CBI21676.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (735), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/359 (43%), Positives = 223/359 (62%), Gaps = 46/359 (12%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDK-DPDTITSYIDIVGHAFG 69
           GI  L++PYALS+GGWLSL+   L+A    +T +LL++CM+  D  +ITSY+DI GHAFG
Sbjct: 32  GISYLTVPYALSTGGWLSLMPFSLVAIMTFYTGILLKRCMEAADHPSITSYLDIAGHAFG 91

Query: 70  HKDE---------------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMI 102
            K                             K  P F + LG+LT+DGR +F ++  ++I
Sbjct: 92  TKGRITVMIIMNLEMYLVAVGLLILEVDNLRKLFPEFMINLGELTVDGRQSFAIITFLII 151

Query: 103 LPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRR-LFNLNGIPTTLSL 161
           LPT++L DL ILS++SA G  S +++ V  FCVGA  GVGFH K   L N++ +P T+SL
Sbjct: 152 LPTIFLTDLSILSYISATGFFSCLVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSL 211

Query: 162 YTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITL 204
           Y   +G H                  VLL SFV+ T+TY++MA++GYL+YG  V+S+ITL
Sbjct: 212 YIVSFGGHPVIPPIYVSMRDRYQFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITL 271

Query: 205 NLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVS 264
           NLP  +VS+++AIYT L  PIA+YAL +  IATAIE  +S +YK+ R+  + IR++LL S
Sbjct: 272 NLPTSKVSARIAIYTTLVIPIARYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFS 331

Query: 265 TVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           T ++A  FP ++S+ +++G+   V  SFLLPC+ YL IS++   W  E IGI  I+L  
Sbjct: 332 TAIVAYYFPYYESLMAIVGSIFVVSGSFLLPCLCYLKISDLNWGWNCEQIGIRGIILFG 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452805|ref|XP_002283468.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|296082904|emb|CBI22205.3| unnamed protein product [Vitis vinifera]

 Score =  287 bits (734), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 163/357 (45%), Positives = 219/357 (61%), Gaps = 46/357 (12%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           G+ ILS PYALSSGGWLSL++L++IA    +T LLLR+CMD  P+ I +Y D+   AFG 
Sbjct: 55  GVGILSTPYALSSGGWLSLVLLLVIATATFYTGLLLRRCMDAHPN-IRTYPDVGERAFGK 113

Query: 71  KD----------------------EKD-----VPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
                                   E D      P+  L++  L IDGR +F+++ G++IL
Sbjct: 114 MGRLLVSVFMYTELYLVATGFLILEGDNLHNLFPNMGLEIWGLMIDGRQSFIIIVGLVIL 173

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           P++W+N+L ILS++SA GVL+ II+       GA  GVGF  K    N  GIPT +SLY 
Sbjct: 174 PSVWVNNLNILSYISASGVLACIIILGSILWTGAFDGVGFDEKGTSLNWQGIPTAVSLYA 233

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
           FCY AH                 +VLL+ F+ CTITY  MA+LGYL++G NVQSQITLNL
Sbjct: 234 FCYCAHPVFPTLYTSMRKKHQFSNVLLVCFIFCTITYAAMAILGYLMFGSNVQSQITLNL 293

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           PIE++SS++AIYT L  PI+KYAL V  I  A E  L   YK  R  S++IR +L+ ST+
Sbjct: 294 PIEKLSSRIAIYTTLVNPISKYALMVTPIVDATENWLPYYYKK-RPFSLIIRSTLVFSTI 352

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           ++A   P F S+ SL+GAFL V  S LLPC+ YL IS +Y  +G EL+ I+ ++L+ 
Sbjct: 353 IVALTVPFFGSLMSLVGAFLSVTASILLPCLCYLKISGIYHKFGVELVIIIGVVLMG 409

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494485|ref|XP_002265224.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] gi|296082672|emb|CBI21677.3| unnamed protein product [Vitis vinifera]

 Score =  281 bits (718), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 150/348 (43%), Positives = 219/348 (62%), Gaps = 48/348 (13%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDK-DPDTITSYIDIVGHAFG 69
           G+  L++PYALS+GGWLSL++  L+A    +T +LL++CM+  D  +ITSY+DI GHAFG
Sbjct: 32  GMSYLTVPYALSTGGWLSLMLFSLVAIMTFYTGILLKRCMEAADHPSITSYLDIAGHAFG 91

Query: 70  HKDE---------------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMI 102
            K                             K  P F + LG+LT+DGR +F ++  ++I
Sbjct: 92  TKGRITVMIIMNLEIYLVAVGLLIQEVDSLRKLFPEFMINLGELTVDGRQSFAIITFLII 151

Query: 103 LPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRR-LFNLNGIPTTLSL 161
           LPT++L DL ILS++SA G  S +++ V  FCVGA  GVGFH K   L N++ +P T+SL
Sbjct: 152 LPTIFLTDLSILSYISATGFYSCLVILVSIFCVGAFNGVGFHAKGSILLNVDRLPITVSL 211

Query: 162 YTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITL 204
           Y   +G H                  VLL SFV+ T+TY++MA++GYL+YG  V+S+ITL
Sbjct: 212 YIVSFGGHPVIPPIYVSMRDRYQFSKVLLFSFVLATLTYMSMAIVGYLMYGDRVESEITL 271

Query: 205 NLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVS 264
           NLP  +VS+++ IYT L  PIA+YAL +  IATAIE  +S +YK+ R+  + IR++LL S
Sbjct: 272 NLPTSKVSARITIYTTLVIPIARYALVLTPIATAIEGGISENYKNKRAVRLFIRVALLFS 331

Query: 265 TVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYE 312
           T ++A  FP ++S+ +++G+   V  SFLLPC+ YL IS++  NWG+ 
Sbjct: 332 TAIVAYYFPYYESLMAIVGSIFVVSGSFLLPCLCYLKISDL--NWGWN 377

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255562864|ref|XP_002522437.1| amino acid transporter, putative [Ricinus communis] gi|223538322|gb|EEF39929.1| amino acid transporter, putative [Ricinus communis]

 Score =  279 bits (714), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 156/357 (43%), Positives = 213/357 (59%), Gaps = 47/357 (13%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           G+ ILSIPYALS GGW+SLI+L L+A    +T LLLR+CMD DP  I +Y DI   AFG+
Sbjct: 32  GVGILSIPYALSQGGWVSLILLFLVAILCWYTGLLLRRCMDADP-VIKTYPDIGQRAFGY 90

Query: 71  KDE---------------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                             K  P   LK+  + I G+  F++L  ++IL
Sbjct: 91  KGRALVSIFMYLELYLVAVEFLILEGDNLYKLFPDMSLKVAGVKIGGKQGFILLTALVIL 150

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           PT WL  LG+L++VSAGGVL+S+++  C   VGA  GVGFH    L+N  G+PT  SL+ 
Sbjct: 151 PTTWLRSLGMLAYVSAGGVLASVVLLGCVLWVGAVDGVGFHEGDVLWNWGGLPTATSLFA 210

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
           FCY  H                  VLL+ F+  T TY +MAVLGYL+YG+ ++SQ+TLNL
Sbjct: 211 FCYCGHAVFPTLCNSMKDKSQFSKVLLVCFITSTFTYASMAVLGYLMYGEYLKSQVTLNL 270

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           PI ++S+K+AIYT L  P+ KYA+    +A AIE     +  D +S SILIR ++++ST+
Sbjct: 271 PIRKISAKIAIYTTLVNPLTKYAVVTAPVAKAIEDAFRLN--DSKSLSILIRTAIMISTL 328

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           V+A   P F  V + IGAFL V VS LLPC+ YL I++  R +G EL+ I+ I++  
Sbjct: 329 VVALTIPFFGYVMAFIGAFLSVTVSMLLPCLCYLRINKAARTFGLELVVIVGILIFG 385

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465052|ref|XP_002265265.1| PREDICTED: vacuolar amino acid transporter 1 [Vitis vinifera] gi|147833562|emb|CAN75006.1| hypothetical protein VITISV_015129 [Vitis vinifera]

 Score =  279 bits (713), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 155/358 (43%), Positives = 220/358 (61%), Gaps = 47/358 (13%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           GI  L+IPYALSSGGWLSL++   IAA   +T LLL +CM+ DP +I SY DI   AFG 
Sbjct: 32  GIGFLTIPYALSSGGWLSLVLFFSIAAMTFYTGLLLVRCMEVDP-SILSYYDIAERAFGM 90

Query: 71  KD---------------------------EKDVPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                            +K  P F +KLG+LT+DG+ +FV++ G++  
Sbjct: 91  KGRMIVMFMMNAEMYLIATGFLILEGDNLQKLFPEFMIKLGELTLDGKQSFVIITGLLFS 150

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRR-LFNLNGIPTTLSLY 162
             M L DL +LS++SA GV S +++ V  FCVGA  GVGFH K   L NL+ +PT + LY
Sbjct: 151 ALMLLTDLSMLSYISATGVFSCLVIVVSIFCVGAFDGVGFHAKGSVLLNLDTLPTAVGLY 210

Query: 163 TFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLN 205
              +G H                  VL+ SF++ T+ Y+T+A+LGYL+YG  ++S+ITLN
Sbjct: 211 IVSFGGHPVIPSIYMSMRDSCQFSKVLVFSFILATLNYMTIAILGYLMYGDGIESEITLN 270

Query: 206 LPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVST 265
           LP  +VS +VAIYT L  P+ +Y+L V  IATAIE  LS  YK+ +   +LIR++LL+ST
Sbjct: 271 LP-TKVSGRVAIYTTLLIPVTRYSLLVAPIATAIEGGLSEKYKNQKPVRLLIRVALLIST 329

Query: 266 VVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           V++A VFP ++S+ +++G+   V  SFLLPC+ YL IS++  NW  E +GI+ I++  
Sbjct: 330 VIVACVFPYYESLMAIVGSVFVVSASFLLPCLCYLKISDLNWNWNCEQMGIVGIIVFG 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112271|ref|XP_002316138.1| amino acid transporter [Populus trichocarpa] gi|222865178|gb|EEF02309.1| amino acid transporter [Populus trichocarpa]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 168/357 (47%), Positives = 218/357 (61%), Gaps = 47/357 (13%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           G+ ILSIPYALS GGWLSLI+L L+A    +T LLLR+CMD DP  I SY DI   AFG+
Sbjct: 40  GVGILSIPYALSQGGWLSLILLFLVAVLCWYTGLLLRRCMDSDP-LIRSYPDIGERAFGY 98

Query: 71  K-------------------------DEKD--VPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                         D  D   P+  +K   L I G+ AFV+L  ++IL
Sbjct: 99  KGRTLVSIFMYLELYLVAVEFLILEGDNLDRLFPNTGVKFAGLYIGGKTAFVLLTALVIL 158

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYT 163
           PT WL  LG+L++VSAGGV++S+++  C   VGA  GVGFH    L N  G+PTTLSL+T
Sbjct: 159 PTTWLKSLGMLAYVSAGGVMASVLLVGCVLWVGAVDGVGFHENGVLLNGGGLPTTLSLFT 218

Query: 164 FCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNL 206
           FCY  H                  VLL+ FV  TITY +MAVLGYL+YG+ ++SQ+TLNL
Sbjct: 219 FCYCGHAVFPTLCNSMKDRSQFSKVLLICFVTSTITYGSMAVLGYLMYGEYLKSQVTLNL 278

Query: 207 PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV 266
           PI ++ SK+AIYT L  P+ KYA+    IATAIE  L   +++ R  SILIR  +++STV
Sbjct: 279 PIRKIGSKIAIYTTLINPLTKYAVITAPIATAIEDTL--VFRNSRYLSILIRTVIVISTV 336

Query: 267 VLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           V+A   P F  V + IGAFL V VS LLPC+ YL I +  R +G EL+ I+ I+++ 
Sbjct: 337 VVALTIPFFGYVMAFIGAFLSVTVSMLLPCLCYLRIDKSARRFGLELVLIVGILIVG 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082673|emb|CBI21678.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (709), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 155/358 (43%), Positives = 220/358 (61%), Gaps = 47/358 (13%)

Query: 11  GIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGH 70
           GI  L+IPYALSSGGWLSL++   IAA   +T LLL +CM+ DP +I SY DI   AFG 
Sbjct: 32  GIGFLTIPYALSSGGWLSLVLFFSIAAMTFYTGLLLVRCMEVDP-SILSYYDIAERAFGM 90

Query: 71  KD---------------------------EKDVPHFDLKLGKLTIDGRHAFVVLGGVMIL 103
           K                            +K  P F +KLG+LT+DG+ +FV++ G++  
Sbjct: 91  KGRMIVMFMMNAEMYLIATGFLILEGDNLQKLFPEFMIKLGELTLDGKQSFVIITGLLFS 150

Query: 104 PTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKRR-LFNLNGIPTTLSLY 162
             M L DL +LS++SA GV S +++ V  FCVGA  GVGFH K   L NL+ +PT + LY
Sbjct: 151 ALMLLTDLSMLSYISATGVFSCLVIVVSIFCVGAFDGVGFHAKGSVLLNLDTLPTAVGLY 210

Query: 163 TFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLN 205
              +G H                  VL+ SF++ T+ Y+T+A+LGYL+YG  ++S+ITLN
Sbjct: 211 IVSFGGHPVIPSIYMSMRDSCQFSKVLVFSFILATLNYMTIAILGYLMYGDGIESEITLN 270

Query: 206 LPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVST 265
           LP  +VS +VAIYT L  P+ +Y+L V  IATAIE  LS  YK+ +   +LIR++LL+ST
Sbjct: 271 LP-TKVSGRVAIYTTLLIPVTRYSLLVAPIATAIEGGLSEKYKNQKPVRLLIRVALLIST 329

Query: 266 VVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
           V++A VFP ++S+ +++G+   V  SFLLPC+ YL IS++  NW  E +GI+ I++  
Sbjct: 330 VIVACVFPYYESLMAIVGSVFVVSASFLLPCLCYLKISDLNWNWNCEQMGIVGIIVFG 387

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	323
TAIR|locus:2150911	423	AT5G15240 [Arabidopsis thalian	0.470	0.359	0.421	1.9e-57
TAIR|locus:2087012	405	AT3G28960 "AT3G28960" [Arabido	0.523	0.417	0.408	6.8e-51
TAIR|locus:2056118	550	AT2G39130 [Arabidopsis thalian	0.294	0.172	0.421	1.7e-48
TAIR|locus:2185143	526	AT5G02170 [Arabidopsis thalian	0.464	0.285	0.337	6.6e-48
TAIR|locus:2083529	524	AT3G09330 "AT3G09330" [Arabido	0.405	0.25	0.373	3.4e-46
TAIR|locus:2082652	546	AT3G54830 "AT3G54830" [Arabido	0.294	0.173	0.410	7.6e-45
TAIR|locus:2063255	536	AT2G41190 [Arabidopsis thalian	0.294	0.177	0.410	4e-43
TAIR|locus:2185158	550	AT5G02180 [Arabidopsis thalian	0.640	0.376	0.318	7.9e-29
TAIR|locus:2083549	528	AT3G09340 "AT3G09340" [Arabido	0.616	0.376	0.304	2e-27
TAIR|locus:2149045	426	AT5G16740 [Arabidopsis thalian	0.476	0.361	0.308	6.6e-13

TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.9e-57, Sum P(3) = 1.9e-57
 Identities = 64/152 (42%), Positives = 93/152 (61%)

Query:   170 HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYA 229
             +V+++ F ICT  Y ++AVLGYL+YG +V+SQITLNLP +++SSKVAI+T L  PIAK+A
Sbjct:   251 NVMIICFTICTFIYASVAVLGYLMYGSDVESQITLNLPTDKLSSKVAIWTTLVNPIAKFA 310

Query:   230 LTVMSIATAIERQLSASYKDCRSASILIRMXXXXXXXXXXXXFPSFQSVTSLIGAFLKVV 289
             L V  I  A+  + S    + R++  L+               P F  + SL+GAFL   
Sbjct:   311 LMVTPIIDAMRSRFSRVLPNKRASGFLLSTILVTSNVIVALLLPFFGDLMSLVGAFLSAS 370

Query:   290 VSFLLPCVSYLNISEVYRNWGYELIGILAIML 321
              S +LPC+ YL IS  Y+  G+E + ++ I L
Sbjct:   371 ASVILPCLCYLKISGKYQRLGFETLVLIGITL 402

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS;RCA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015824 "proline transport" evidence=RCA

TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)]

 Score = 314 (115.6 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 69/169 (40%), Positives = 94/169 (55%)

Query:   155 IPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSK 214
             +PT  S     +  ++VLL+ F++CTI Y +MAVLGYL+YG    SQITLNLPI + SSK
Sbjct:   218 LPTLYSSMKSKHQFNNVLLICFILCTIGYTSMAVLGYLMYGSQTLSQITLNLPIHKTSSK 277

Query:   215 VAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMXXXXXXXXXXXXFPS 274
             VAIYT L  P+AKYAL +      I+    + Y       +LI               P 
Sbjct:   278 VAIYTTLVNPVAKYALMITPTVNTIKDWFPSRYSKKAYLHLLISTFFIISSVVIAETLPF 337

Query:   275 FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA 323
             F  + SL+GA L V VS LLPC+ YL I   Y+  G E I +  +++++
Sbjct:   338 FGYMMSLVGALLSVTVSILLPCLCYLKIFGNYKKIGCETIMLFGMVVMS 386

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.7e-48, Sum P(3) = 1.7e-48
 Identities = 40/95 (42%), Positives = 60/95 (63%)

Query:    77 PHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVG 136
             P+  L +G   +D RH F +L  + +LPT+WL DL +LS++SAGGV++S++V +C F +G
Sbjct:   267 PNAALSIGGFQLDARHLFALLTTLAVLPTVWLRDLSVLSYISAGGVIASVLVVLCLFWIG 326

Query:   137 ATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHV 171
                 VG H K    NL+ +P  + LY +CY  H V
Sbjct:   327 LVDEVGIHSKGTTLNLSTLPVAIGLYGYCYSGHAV 361

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 6.6e-48, Sum P(3) = 6.6e-48
 Identities = 52/154 (33%), Positives = 93/154 (60%)

Query:   171 VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYAL 230
             VLL+SF  CT+ Y+ +AV G+ ++G  +QSQ TLN+P    SSK+A++T +  P+ KYAL
Sbjct:   353 VLLISFAFCTLFYIAVAVCGFTMFGDAIQSQFTLNMPPHFTSSKIAVWTAVVTPMTKYAL 412

Query:   231 TVMSIATAIERQLSASYKDCRS--ASILIRMXXXXXXXXXXXXFPSFQSVTSLIGAFLKV 288
             T+  +  ++E  + +S +  RS   S+L R              P F +V +LIG+F+ +
Sbjct:   413 TITPVMLSLEELIPSSSRKMRSKGVSMLFRTILVLSTLVVALTVPFFATVAALIGSFIAM 472

Query:   289 VVSFLLPCVSYLNISEVYRNWGYELIGILAIMLL 322
             +++ + PC+ Y++I +  R   ++ IGI  ++++
Sbjct:   473 LIALIFPCLCYISIMKG-RLTNFQ-IGICILIVI 504

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 3.4e-46, Sum P(3) = 3.4e-46
 Identities = 50/134 (37%), Positives = 79/134 (58%)

Query:   171 VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYAL 230
             VLL+SF  C   Y+ +A+ GY ++G+ +QSQ TLN+P +  +SK+A++T +  P+ KYAL
Sbjct:   352 VLLISFGFCVFFYIVVAICGYSMFGEAIQSQFTLNMPQQYTASKIAVWTAVVVPMTKYAL 411

Query:   231 TVMSIATAIERQLSASYKDCRS--ASILIRMXXXXXXXXXXXXFPSFQSVTSLIGAFLKV 288
              +  I   +E  +  S K  RS   SI I+             FP F  + +L+G+FL +
Sbjct:   412 ALTPIVLGLEELMLPSEK-MRSYGVSIFIKTILVLSTLVVALTFPFFAIMGALMGSFLAM 470

Query:   289 VVSFLLPCVSYLNI 302
             +V F+ PC+ YL+I
Sbjct:   471 LVDFIFPCLCYLSI 484

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 7.6e-45, Sum P(3) = 7.6e-45
 Identities = 39/95 (41%), Positives = 58/95 (61%)

Query:    77 PHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVG 136
             P+  L +G   +D    F +L  + +LPT+WL DL +LS++SAGGV++S++V +C F VG
Sbjct:   257 PNASLSIGGFHLDAPRLFALLTTLAVLPTVWLRDLSVLSYISAGGVIASVLVVLCLFWVG 316

Query:   137 ATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHV 171
                 VG H K    NL  +P ++ LY +CY  H V
Sbjct:   317 LVDDVGIHSKGTPLNLATLPVSVGLYGYCYSGHGV 351

GO:0005275 "amine transmembrane transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 4.0e-43, Sum P(3) = 4.0e-43
 Identities = 39/95 (41%), Positives = 59/95 (62%)

Query:    77 PHFDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVG 136
             P   L L    +D +H F +L  +++LPT+WL DL I+S++SAGGV+++ ++ V  F +G
Sbjct:   254 PGTSLDLLGFRLDSKHLFGILTALIVLPTVWLKDLRIISYLSAGGVIATALIAVSVFFLG 313

Query:   137 ATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHV 171
              T G+GFH   +    NGIP  + +Y FCY  H V
Sbjct:   314 TTGGIGFHHTGQAVKWNGIPFAIGIYGFCYSGHSV 348

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)]

 Score = 267 (99.0 bits), Expect = 7.9e-29, Sum P(2) = 7.9e-29
 Identities = 72/226 (31%), Positives = 114/226 (50%)

Query:    80 DLKL-GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGV--LSSIIVTVCAFCVG 136
             DL L   L++ G  A ++LG    +   W+  +  + F + G V  LS++ VT+  F   
Sbjct:   300 DLSLLSYLSVGGVLASILLG----ICLFWVGAVDGIGFHATGRVFDLSNLPVTIGIF--- 352

Query:   137 ATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQ 196
                G G+ G     N+       S +        VL++ F  CT+ Y+ +AV GY ++G+
Sbjct:   353 ---GFGYSGHSVFPNIYSSMKDPSRFPL------VLVICFSFCTVLYIAVAVCGYTMFGE 403

Query:   197 NVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASIL 256
              V+SQ TLN+P     SKVA++T +  P+ KYALT+  I  ++E  +  +    R  SIL
Sbjct:   404 AVESQFTLNMPKHFFPSKVAVWTAVITPMTKYALTITPIVMSLEELIPTAKMRSRGVSIL 463

Query:   257 IRMXXXXXXXXXXXXFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNI 302
              R              P F  V +LIG+FL ++V+ + PC+ YL+I
Sbjct:   464 FRTMLVTSTLVVALSVPFFAIVAALIGSFLAMLVALIFPCLCYLSI 509

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)]

 Score = 244 (91.0 bits), Expect = 2.0e-27, Sum P(2) = 2.0e-27
 Identities = 66/217 (30%), Positives = 107/217 (49%)

Query:    93 AFVVLGGVMI-----LPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHGKR 147
             +++  GGV +     L   W+  +  + F + G  L    + V    +G   G GF G  
Sbjct:   279 SYLSAGGVFVSILLALCLFWVGSVDGVGFHTGGKALDLANLPVA---IGIF-GFGFSGHA 334

Query:   148 RLFNLNGIPTTLSLYTFCYGAHHVLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLNLP 207
              L ++       S +        VLL+SF  C   Y+ +A+ GY ++G+ +QSQ TLN+P
Sbjct:   335 VLPSIYSSMKEPSKFPL------VLLISFGFCVFFYIAVAICGYSMFGEAIQSQFTLNMP 388

Query:   208 IEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRS--ASILIRMXXXXXX 265
              +  +SK+A++T +  P+ KYAL +  I   +E  +  S K  RS   SI I+       
Sbjct:   389 QQYTASKIAVWTAVVVPMTKYALALTPIVLGLEELMPPSEK-MRSYGVSIFIKTILVLST 447

Query:   266 XXXXXXFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNI 302
                   FP F  + +L+G+FL  +V F+ PC+ YL+I
Sbjct:   448 LVVALTFPFFAIMGALMGSFLATLVDFIFPCLCYLSI 484

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 6.6e-13, Sum P(2) = 6.6e-13
 Identities = 49/159 (30%), Positives = 74/159 (46%)

Query:   149 LFNLNGIPTTLSLYTFCYGAHH---VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITLN 205
             LF+  G     +LYT          V ++SF   T  Y  +A+ G  ++G +V SQITL+
Sbjct:   223 LFSFGGHIVFPNLYTSMKDPSKFTKVSIVSFATVTALYGALAITGAKMFGPSVNSQITLS 282

Query:   206 LPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRS--ASILIRMXXXX 263
             LP   V +K+A++  +  P+ KYAL    +A  +ER L ++  D     A  L+      
Sbjct:   283 LPKHLVVTKIALWATVLTPMTKYALEFAPLAIQLERSLPSTMTDRTKLVARGLMGSALLL 342

Query:   264 XXXXXXXXFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNI 302
                      P F  V SL G+ + V ++  LP   YL I
Sbjct:   343 VILALALTVPYFGYVLSLTGSLVSVTIAVTLPSAFYLKI 381

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	323
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-18
COG0814	415	COG0814, SdaC, Amino acid permeases [Amino acid tr	3e-05

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 84/358 (23%), Positives = 141/358 (39%), Gaps = 59/358 (16%)

Query: 11  GIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDP----DTITSYIDIVG 65
           G  +LS+PYA    GW+  LI+LV++   + +T  LL QC             SY D+  
Sbjct: 18  GAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKYVDKVKGKRRKSYGDLGY 77

Query: 66  HAFGHKDE-----------------------KDVPH-FDLKLGKLTIDGRHAFVVLGGVM 101
             FG K +                        ++P  FD       I   +  ++ G + 
Sbjct: 78  RLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFDTCHISLVYFIIIFGLIF 137

Query: 102 ILPTMW--LNDLGILSFVSAGGVLSSIIVTVCAF--CVGATKGVGFHGKRRLFNLNGIPT 157
           I  +    L+ L ILS V+A   L  +I+ +      V   +GVG  G +    L  +  
Sbjct: 138 IPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVLTAQGVGSLGAKTNIKLARLFL 197

Query: 158 TLSLYTFCYGAHHVLL--------------------LSFVICTITYLTMAVLGYLIYGQN 197
            + +  F +  H VLL                     + +I T+ Y+ + ++GYL +G N
Sbjct: 198 AIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAIIIVTVLYILVGLVGYLAFGNN 257

Query: 198 VQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDC------R 251
           V+  I LNLP       +A   ++   +  Y L    I   +E  L             +
Sbjct: 258 VKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIRQIVENLLFRKGASGKHNPKSK 317

Query: 252 SASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNW 309
              ++IR  L+V T ++A   P      SL+GA     ++F+LP + +L + +  +  
Sbjct: 318 LLRVVIRSGLVVITYLIAISVPFLGDFLSLVGATSGAPLTFILPPLFHLKLKKTKKKS 375

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism]

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 54/377 (14%), Positives = 113/377 (29%), Gaps = 68/377 (18%)

Query: 11  GIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFG 69
           G  +L +P A   GG+   L++L++       + LLL + +   P+   S   +V    G
Sbjct: 24  GAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLG 83

Query: 70  HKDE-----------------------KDVPHFDLKLGKLTIDGRHAFVVLGGVMILPTM 106
            K                           +  F      L    R    ++  +++    
Sbjct: 84  KKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLS 143

Query: 107 WLNDLGILSFVSA-GGVLSSIIVTVCAFCVGATKGVGFHGKRRL--FNLNGIPTTLSLYT 163
           WL  L +L   S         +V +  + +                     +   + ++ 
Sbjct: 144 WLGTLAVLKITSLLVFGKVIYLVLLVVYLIPHWNPANLFALPSASQSFWKYLLLAIPVFV 203

Query: 164 FCYGAHH-------------------VLLLSFVICTITYLTMAVLGYLIYGQNVQSQITL 204
           F +G H                     +L+  +I  + Y+ +    +  +G  V   I  
Sbjct: 204 FSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILA 263

Query: 205 NLPIEQVSSKVAIYTILAGPIAKYALTV---MSIATA-----------------IERQLS 244
               + +S   A+  ++  PI   AL +    +IAT+                       
Sbjct: 264 AKE-QNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKP 322

Query: 245 ASYKDCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISE 304
              K      +   +  L+     A        + + IGA +   + F+ P      +  
Sbjct: 323 GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLP- 381

Query: 305 VYRNWGYELIGILAIML 321
             + +G   + +L ++L
Sbjct: 382 ALKVYGGNFLLLLLVLL 398

Length = 415

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	323
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1305	411	consensus Amino acid transporter protein [Amino ac	100.0
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	100.0
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.92
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	99.79
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	99.78
PRK10483	414	tryptophan permease; Provisional	99.74
PRK09664	415	tryptophan permease TnaB; Provisional	99.73
PRK15132	403	tyrosine transporter TyrP; Provisional	99.71
TIGR00814	397	stp serine transporter. The HAAAP family includes	99.51
PRK13629	443	threonine/serine transporter TdcC; Provisional	99.38
TIGR00912	359	2A0309 spore germination protein (amino acid perme	98.4
KOG3832	319	consensus Predicted amino acid transporter [Genera	98.13
PRK11021	410	putative transporter; Provisional	98.13
PRK10655	438	potE putrescine transporter; Provisional	97.96
TIGR00909	429	2A0306 amino acid transporter.	97.94
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.87
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.77
PRK10644	445	arginine:agmatin antiporter; Provisional	97.76
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	97.76
PRK10746	461	putative transport protein YifK; Provisional	97.72
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.71
PRK10249	458	phenylalanine transporter; Provisional	97.68
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.66
PF03845	320	Spore_permease: Spore germination protein; InterPr	97.59
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	97.53
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.48
TIGR00913	478	2A0310 amino acid permease (yeast).	97.43
KOG1287	479	consensus Amino acid transporters [Amino acid tran	97.41
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.39
PRK10580	457	proY putative proline-specific permease; Provision	97.38
PRK10238	456	aromatic amino acid transporter; Provisional	97.34
PRK11387	471	S-methylmethionine transporter; Provisional	97.33
PRK15049	499	L-asparagine permease; Provisional	97.31
PRK10836	489	lysine transporter; Provisional	97.3
TIGR00930	953	2a30 K-Cl cotransporter.	97.13
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.04
TIGR00911	501	2A0308 L-type amino acid transporter.	97.03
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	96.94
PRK15238	496	inner membrane transporter YjeM; Provisional	96.38
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	96.19
COG0531	466	PotE Amino acid transporters [Amino acid transport	95.41
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	93.16
COG3949	349	Uncharacterized membrane protein [Function unknown	92.87
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	92.8
COG1953	497	FUI1 Cytosine/uracil/thiamine/allantoin permeases	91.66
KOG1286	554	consensus Amino acid transporters [Amino acid tran	89.63
COG0833	541	LysP Amino acid transporters [Amino acid transport	83.87
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	83.07

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-48  Score=357.23  Aligned_cols=320  Identities=19%  Similarity=0.262  Sum_probs=276.4

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhC----CCCCCCHHHHHHhhcC--cc---
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKD----PDTITSYIDIVGHAFG--HK---   71 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~----~~~~~~y~~l~~~~~G--~~---   71 (323)
                      ..|+.|.++|+|+|++|+||+++||+ |.+...+++.++.|+++++++|.++.    +++..+|+|.++.++.  ++   
T Consensus        53 l~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a~~~~~~~~r  132 (449)
T KOG1304|consen   53 LIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESAMEGGPGWLR  132 (449)
T ss_pred             HHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHHHcCCcHHHH
Confidence            46999999999999999999999998 99999999999999999999998763    2335789999987752  22   


Q ss_pred             -----c------------------cccccccccc-ccc---ccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHH
Q 044509           72 -----D------------------EKDVPHFDLK-LGK---LTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLS  124 (323)
Q Consensus        72 -----~------------------~~l~~~~~~~-~~~---~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~  124 (323)
                           +                  +.+|.+.+++ +.+   ...-+.+.++++..+..+|++++|++|.|+.+|.++.+.
T Consensus       133 ~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~Lk~Lsp~Sl~Anv~  212 (449)
T KOG1304|consen  133 KYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRNLKILSPFSLFANVF  212 (449)
T ss_pred             hhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHH
Confidence                 2                  1233333332 222   112246789999999999999999999999999999999


Q ss_pred             HHHHhhhheeecccccccccCcccCCCCCChhhhhhhheeeccch--------------------hhhHHHHHHHHHHHH
Q 044509          125 SIIVTVCAFCVGATKGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH--------------------HVLLLSFVICTITYL  184 (323)
Q Consensus       125 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~--------------------~~~~~~~~i~~~~y~  184 (323)
                      .+...++++++.+.+.++.++.+...++.+++.++|+.+|||+++                    ++++.+|.++.++|.
T Consensus       213 ~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~gVLn~~M~~V~~ly~  292 (449)
T KOG1304|consen  213 ILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFGVLNLGMGIVTLLYI  292 (449)
T ss_pred             HHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccchHHHHHHHHHHHHH
Confidence            999999999999888777788888888999999999999999998                    899999999999999


Q ss_pred             HHHhHHHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC--CCchhhhhHHHHHH
Q 044509          185 TMAVLGYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK--DCRSASILIRMSLL  262 (323)
Q Consensus       185 ~~g~~gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  262 (323)
                      .+|++||++|||++++.++.|+|+ ++..+.+++++++.+.++||+|++|..|.+|+.+.+|-+  ++++..+.+|..++
T Consensus       293 ~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~~~~~~~~~~R~~lV  371 (449)
T KOG1304|consen  293 FLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSENRKKLLEYALRVFLV  371 (449)
T ss_pred             HHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcchhHHHHHHHHHHHH
Confidence            999999999999999999999999 677788999999999999999999999999997665422  25677899999999


Q ss_pred             HHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhccccc--ccceeeEEeEEEEEe
Q 044509          263 VSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYR--NWGYELIGILAIMLL  322 (323)
Q Consensus       263 ~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~--~~~~~~~~~~~ii~~  322 (323)
                      ++++.+|..+||++.+++++||++++.+++++|++++++.+++++  ..+|+++.|.+++++
T Consensus       372 llt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~  433 (449)
T KOG1304|consen  372 LLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVF  433 (449)
T ss_pred             HHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998764  456777777655443

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=1.1e-47  Score=365.12  Aligned_cols=317  Identities=19%  Similarity=0.264  Sum_probs=248.8

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc----
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV----   76 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~----   76 (323)
                      +||++|+++|+|+|++|+||+++||+ |++++++++.++.||.++|.+++++.+.  ++|+|++++++|++++.+.    
T Consensus        66 ~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~~--~sY~~la~~~~G~~g~~~v~~~~  143 (467)
T PTZ00206         66 AFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTNI--RTYEGVARVLLGPWGSYYVAATR  143 (467)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CCHHHHHHHHhCHHHHHHHHHHH
Confidence            68999999999999999999999999 9999999999999999999999998665  8999999999999883211    


Q ss_pred             --------------cccccc-cc------c---ccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhh
Q 044509           77 --------------PHFDLK-LG------K---LTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCA  132 (323)
Q Consensus        77 --------------~~~~~~-~~------~---~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v  132 (323)
                                    .....+ ..      +   ...+.+..+.+++.++++|++++|++++++++|.+|+.++++.++.+
T Consensus       144 ~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S~i~~~~i~~~vi~i  223 (467)
T PTZ00206        144 AFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAVSFMVYLVIVI  223 (467)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHHHHHHHHHHHHHHHhhh
Confidence                          110000 00      0   01112333455677889999999999999999999999888877777


Q ss_pred             eeeccccccc--ccC-------ccc--CC-CCCChhhhhhhheeeccch-------------------hhhHHHHHHHHH
Q 044509          133 FCVGATKGVG--FHG-------KRR--LF-NLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTI  181 (323)
Q Consensus       133 ~~~~~~~~~~--~~~-------~~~--~~-~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~  181 (323)
                      ++++..++.+  .++       .+.  .. ...+.+.++|+++|||.||                   +++..++.++.+
T Consensus       224 vi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~~~~~~v~~~s~~i~~~  303 (467)
T PTZ00206        224 VVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLASTIAMGMCFT  303 (467)
T ss_pred             hhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccchhHHHHHHHHHHHHHHH
Confidence            6655433211  111       010  11 1235788999999999999                   677889999999


Q ss_pred             HHHHHHhHHHhhccccchhHhHhcC-CCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-CCCchhhhhHHH
Q 044509          182 TYLTMAVLGYLIYGQNVQSQITLNL-PIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASY-KDCRSASILIRM  259 (323)
Q Consensus       182 ~y~~~g~~gy~~fG~~~~~~i~~n~-~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  259 (323)
                      +|..+|++||++||++++++++.|+ |.++....+++....+.++.+||++.+|+|+.+++....+. +.+++++...+.
T Consensus       304 lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~~~~~~~~~~~~~~~~  383 (467)
T PTZ00206        304 MYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGWDARKVAFWKHCIAVV  383 (467)
T ss_pred             HHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCCCcccCchhhHHHHHH
Confidence            9999999999999999999999999 56666667888888999999999999999999999874432 334556666677


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhc--ccccccceeeEEeEEEE
Q 044509          260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNIS--EVYRNWGYELIGILAIM  320 (323)
Q Consensus       260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~--~~~~~~~~~~~~~~~ii  320 (323)
                      .+.+++.++|+.+||++.+++++||++++.++|++|+++|++..  +.++.++++++.+++++
T Consensus       384 ~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~ll  446 (467)
T PTZ00206        384 TLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVL  446 (467)
T ss_pred             HHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHH
Confidence            77788899999999999999999999999999999999999842  12223444445555444

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5.2e-44  Score=331.95  Aligned_cols=305  Identities=30%  Similarity=0.507  Sum_probs=257.5

Q ss_pred             CccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCC----CCCCHHHHHHhhcCcccccc
Q 044509            1 MILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPD----TITSYIDIVGHAFGHKDEKD   75 (323)
Q Consensus         1 ~ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~----~~~~y~~l~~~~~G~~~~~l   75 (323)
                      .+||.+|.++|.|+|+||+|+++.||+ |+++++..++++.||..+|.+|.+.++.    |.++|+|+++++||++++.+
T Consensus        43 a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl~~~afG~~~~~i  122 (437)
T KOG1303|consen   43 AAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDLGQAAFGPKGRLL  122 (437)
T ss_pred             hhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHHHHHHhCCCceEe
Confidence            368999999999999999999999999 8999999999999999999999988654    56779999999999888321


Q ss_pred             c------------------cccccc-c---c--cc-cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhh
Q 044509           76 V------------------PHFDLK-L---G--KL-TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTV  130 (323)
Q Consensus        76 ~------------------~~~~~~-~---~--~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~  130 (323)
                      .                  ...+++ +   .  +. ..+ .+.|+.+++++.+|++++|+++.+++.|..|.+.......
T Consensus       123 v~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~-~~~f~iif~~i~~~~s~lp~~~~l~~~S~~~avmS~~~a~  201 (437)
T KOG1303|consen  123 VSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLD-KQYFIIIFGLIVLPLSQLPNFHSLSYLSLVGAVMSTLYAV  201 (437)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-ceehhhhHHHHHHHHHHCCCcchhHHHHHHHHHHHHHHHH
Confidence            1                  011111 0   0  11 122 5678999999999999999999999999999988877777


Q ss_pred             hheeecccccccccCc-ccCCCCCC--h-hhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhH
Q 044509          131 CAFCVGATKGVGFHGK-RRLFNLNG--I-PTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVL  189 (323)
Q Consensus       131 ~v~~~~~~~~~~~~~~-~~~~~~~~--~-~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~  189 (323)
                      +..+.+..++.+.+++ ....+...  . ++++|++.|+|++|                 |++..++.+++.+|+..++.
T Consensus       202 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~~~~~~y~~vai~  281 (437)
T KOG1303|consen  202 ILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYIIVTFLYFPVAII  281 (437)
T ss_pred             HHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHHHHHHHHHHHHHh
Confidence            7777776665433221 12222222  2 69999999999999                 89999999999999999999


Q ss_pred             HHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC----CCchhhhhHHHHHHHHH
Q 044509          190 GYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK----DCRSASILIRMSLLVST  265 (323)
Q Consensus       190 gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~  265 (323)
                      ||++|||+++|+++.|++++.+....+++++.+|++.+++.+.+|+.+.+|+....+++    +....|...|..+++.+
T Consensus       282 GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~~~~~~~~~R~~~Rt~~v~~~  361 (437)
T KOG1303|consen  282 GYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPDFKKRSLVLRLLVRTFFVAVT  361 (437)
T ss_pred             hhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCccccccccceeeehhhHHHHHH
Confidence            99999999999999999755677889999999999999999999999999999876544    24458999999999999


Q ss_pred             HHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509          266 VVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY  306 (323)
Q Consensus       266 ~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~  306 (323)
                      .++|+.+|+|+++.+++||+...++++++|+++|++.+|.+
T Consensus       362 ~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~  402 (437)
T KOG1303|consen  362 TFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPK  402 (437)
T ss_pred             HHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999987654

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=100.00  E-value=1e-44  Score=341.23  Aligned_cols=305  Identities=28%  Similarity=0.479  Sum_probs=252.6

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCC--CCCCCHHHHHHhhcCcccccccc-
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDP--DTITSYIDIVGHAFGHKDEKDVP-   77 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~--~~~~~y~~l~~~~~G~~~~~l~~-   77 (323)
                      .+|++|+++|+|+|++|++|+++||+ |++++++++.++.||.++|.|++++.+  ++.++|+|++++.+|++++.+.. 
T Consensus         9 ~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~   88 (409)
T PF01490_consen    9 FFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNGTGRRSYGDLARRAFGPKGKWFVDI   88 (409)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccccccc
Confidence            58999999999999999999999999 999999999999999999999998742  34699999999999998843211 


Q ss_pred             -----------------cccc-ccccc----cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheee
Q 044509           78 -----------------HFDL-KLGKL----TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCV  135 (323)
Q Consensus        78 -----------------~~~~-~~~~~----~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~  135 (323)
                                       .... ++.+.    ...++..+..+.+++++|++++|+++++++.|.+|.+++.+....+...
T Consensus        89 ~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~~~~~~~~~~~~~~~  168 (409)
T PF01490_consen   89 CIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILGLFSIFYFIVIVVIY  168 (409)
T ss_pred             hheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhhhhccceeeeeecce
Confidence                             0000 01111    1123556777888999999999999999999999998877742222222


Q ss_pred             cccc----cccccCc--ccCCCCCChhhhhhhheeeccch--------------------hhhHHHHHHHHHHHHHHHhH
Q 044509          136 GATK----GVGFHGK--RRLFNLNGIPTTLSLYTFCYGAH--------------------HVLLLSFVICTITYLTMAVL  189 (323)
Q Consensus       136 ~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~faf~~~--------------------~~~~~~~~i~~~~y~~~g~~  189 (323)
                      ....    +.+.+++  ....++.+++.++|+++|||.+|                    |+...++.++.++|..+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s~~~~~~~y~~~g~~  248 (409)
T PF01490_consen  169 IISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSISMIICFIIYLLFGIF  248 (409)
T ss_pred             eeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeehhhhhhHHhhhhhhc
Confidence            2111    1111111  12455678999999999999999                    57788999999999999999


Q ss_pred             HHhhccccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc----------cCCCchhhhhHHH
Q 044509          190 GYLIYGQNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS----------YKDCRSASILIRM  259 (323)
Q Consensus       190 gy~~fG~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~  259 (323)
                      ||++||+++++|+++|+|++++...+++.++.++++.+||++.+|.++.+++.+.++          ++.++++|+..|.
T Consensus       249 gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  328 (409)
T PF01490_consen  249 GYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSPKNTPSSRWLRYLIRI  328 (409)
T ss_pred             ccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheeccccccccccccccccceeeeeeec
Confidence            999999999999999999988777899999999999999999999999999988642          2224677999999


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509          260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY  306 (323)
Q Consensus       260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~  306 (323)
                      .++..+.++|..+||++++++++|++++..++|++|+++|++.+|++
T Consensus       329 ~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~  375 (409)
T PF01490_consen  329 ILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRK  375 (409)
T ss_pred             chhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhccc
Confidence            99999999999999999999999999999999999999999998876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=1.2e-40  Score=315.78  Aligned_cols=317  Identities=14%  Similarity=0.177  Sum_probs=245.3

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhh----CCCCC-------CCHHHHHHhhcC
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDK----DPDTI-------TSYIDIVGHAFG   69 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~----~~~~~-------~~y~~l~~~~~G   69 (323)
                      -+|++|..+|.|+|+||+||+++||+ |++.+++++.++.||.+++.+++++    .+++.       .+|.|+++..+|
T Consensus        52 ~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e~~~~~~G  131 (473)
T PLN03074         52 WFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFEVLDGLLG  131 (473)
T ss_pred             HHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHHHHHHhcC
Confidence            37899999999999999999999999 9999999999999999999987543    22111       267999999999


Q ss_pred             ccccccc----------cc--------cccccccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhh
Q 044509           70 HKDEKDV----------PH--------FDLKLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVC  131 (323)
Q Consensus        70 ~~~~~l~----------~~--------~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~  131 (323)
                      |++....          ..        .+....+... +++.|+.++..+..|++++|++++++++|.+|+.++++..+.
T Consensus       132 ~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~~~-~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ig~~~tl~~av~  210 (473)
T PLN03074        132 PYWKNVGLAFNCTFLLFGSVIQLIACASNIYYINDNL-DKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLLMTTYTAWY  210 (473)
T ss_pred             hhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCCCc-CCCeEEeehHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHH
Confidence            9873211          00        0001011122 367888889999999999999999999999998876654333


Q ss_pred             heeeccccc--ccccCcccCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHh
Q 044509          132 AFCVGATKG--VGFHGKRRLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYL  192 (323)
Q Consensus       132 v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~  192 (323)
                      ++.....++  ++.++. ...++..++.++++++|+|++|                 +++..+...+...|+.+|+.||+
T Consensus       211 i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~~~y~~~~~~gY~  289 (473)
T PLN03074        211 MTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVLTLTLPSAAAVYW  289 (473)
T ss_pred             HHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHHHHHHHHHHeeee
Confidence            333322221  122111 1223445667778899999999                 67778888889999999999999


Q ss_pred             hccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHHHHHh
Q 044509          193 IYGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLAT  270 (323)
Q Consensus       193 ~fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~  270 (323)
                      .|||++++  +.+.|+|++++ .++++.+++++.+.+||++.+|+.+.+|+..+.++++....|+.+|..++++++++|+
T Consensus       290 ~fG~~~~~~s~~l~~lp~~~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~  368 (473)
T PLN03074        290 AFGDELLTHSNAFSLLPRSGW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVHDTKSICLRALARLPVVVPIWFLAI  368 (473)
T ss_pred             eechhhhhchhHHhcCCCchH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence            99999764  56777987665 4788999999999999999999999998887655333556799999999999999999


Q ss_pred             hcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc------------cccc--eeeEEeEEEEE
Q 044509          271 VFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY------------RNWG--YELIGILAIML  321 (323)
Q Consensus       271 ~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~------------~~~~--~~~~~~~~ii~  321 (323)
                      .+|+|+.+++++||++++.+++++|+++|++.++++            ..++  |+.+.|+++++
T Consensus       369 ~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv  433 (473)
T PLN03074        369 IFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVV  433 (473)
T ss_pred             HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHH
Confidence            999999999999999999999999999999866442            0223  35688877765

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=100.00  E-value=1.8e-37  Score=286.86  Aligned_cols=302  Identities=21%  Similarity=0.331  Sum_probs=253.2

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP---   77 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~---   77 (323)
                      ++|+.|+++|+|++++|+||++.|.+ |++++..++.++.++.+++.+++++.++  ++|++++++.+|+.+.....   
T Consensus        12 v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~~--~ty~~l~~~~~g~~g~~~~~v~~   89 (411)
T KOG1305|consen   12 VFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSGE--RTYSSLGDLIFGKLGKVDAAVAV   89 (411)
T ss_pred             HHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcCC--CCHHHHHHHHcCCCceeeehhhH
Confidence            79999999999999999999999988 9999999999999999999999999998  59999999999998821100   


Q ss_pred             ---ccc-cc----------------ccccc----ccccch-hHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhh
Q 044509           78 ---HFD-LK----------------LGKLT----IDGRHA-FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCA  132 (323)
Q Consensus        78 ---~~~-~~----------------~~~~~----~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v  132 (323)
                         ..+ ..                ..+.+    +.++.. +++....+..|+++.|+++++++.|.++.+++++.++.+
T Consensus        90 ~~~~~g~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~tS~~s~~~~~~fv~~v  169 (411)
T KOG1305|consen   90 KCFGVGMVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDSLKYTSALSLASVVYFVVLV  169 (411)
T ss_pred             HhhhccceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence               000 00                00011    222334 577888999999999999999999999999999999888


Q ss_pred             eeecccccc----cccCcccCCCCCChhhhhhhheeeccch-------------------hhhHHHHHHHHHHHHHHHhH
Q 044509          133 FCVGATKGV----GFHGKRRLFNLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTITYLTMAVL  189 (323)
Q Consensus       133 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~~y~~~g~~  189 (323)
                      +++.+..+.    ...+.+...++.+.+.++++++|+|.||                   ++...+...+.++|...|.+
T Consensus       170 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~v~~~~~~~~~~iy~~~g~~  249 (411)
T KOG1305|consen  170 VYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQRVSNIAIILATLIYLLTGLF  249 (411)
T ss_pred             HHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            888876432    1112222233368999999999999999                   67788888899999999999


Q ss_pred             HHhhccccchhHhHhcCCCchhH------HHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccC----CCchhhhhHHH
Q 044509          190 GYLIYGQNVQSQITLNLPIEQVS------SKVAIYTILAGPIAKYALTVMSIATAIERQLSASYK----DCRSASILIRM  259 (323)
Q Consensus       190 gy~~fG~~~~~~i~~n~~~~~~~------~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~  259 (323)
                      ||+.|||++.+|++.++|+++..      ....+..+.++.+..+|++.+|+|+.+++...+++.    +++.++.+++.
T Consensus       250 GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~~~~s~~r~~~itl  329 (411)
T KOG1305|consen  250 GYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGLTSFSGKRHFVITL  329 (411)
T ss_pred             hhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCCCCccceehhHHHH
Confidence            99999999999999999875432      367889999999999999999999998887765432    35567899999


Q ss_pred             HHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509          260 SLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEV  305 (323)
Q Consensus       260 ~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~  305 (323)
                      .+...+.+.|+.+||++.+++++||++++.++|++|+++|++..|+
T Consensus       330 ~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~  375 (411)
T KOG1305|consen  330 LLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK  375 (411)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc
Confidence            9999999999999999999999999999999999999999999885

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-36  Score=262.00  Aligned_cols=319  Identities=21%  Similarity=0.361  Sum_probs=265.4

Q ss_pred             ccccchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCC------CCCCHHHHHHhhcCccc--c
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPD------TITSYIDIVGHAFGHKD--E   73 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~------~~~~y~~l~~~~~G~~~--~   73 (323)
                      ..|..|++-|.=+++||+|..-.||.++..++.++..+.||..+|++|..+.++      .+++|.+++..+++++-  +
T Consensus       123 aWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvRdsYvaIA~~C~~P~lGgr  202 (524)
T KOG4303|consen  123 AWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVRDSYVAIADFCYKPGLGGR  202 (524)
T ss_pred             hhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEeehhHHHHHHHhcCCCcchh
Confidence            369999999999999999999999999999999999999999999999987542      46799999999987753  1


Q ss_pred             -----ccc---ccccc------c-----cccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhhee
Q 044509           74 -----KDV---PHFDL------K-----LGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFC  134 (323)
Q Consensus        74 -----~l~---~~~~~------~-----~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~  134 (323)
                           ++.   ....+      +     +.+... +++-|+++.....+|.+++|++|..+..|.+.+.+-+..-++++.
T Consensus       203 ~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~sv-d~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct~sH~viN~i~v~  281 (524)
T KOG4303|consen  203 WVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSV-DKASWMMITSASLLPCSFLKDLKIVSRLSFFCTISHLVINLIMVL  281 (524)
T ss_pred             eeeHHHHHHHHHHHHhhhheechhhhccCCCCCc-cccchhhhhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 110   00000      0     111223 367899999999999999999999999999999888877777776


Q ss_pred             eccc--ccccccCcccCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhcc
Q 044509          135 VGAT--KGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYG  195 (323)
Q Consensus       135 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG  195 (323)
                      ++..  .+++|+......|...++-++|.++|+|..|                 -.+.++-....++-..+|..||++||
T Consensus       282 YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~  361 (524)
T KOG4303|consen  282 YCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFKVVFGMLGFLTFG  361 (524)
T ss_pred             HHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHHHHHHHheeeeec
Confidence            6643  3566766666678889999999999999999                 56889999999999999999999999


Q ss_pred             ccchhHhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-C---------CC--chhhhhHHHHHHH
Q 044509          196 QNVQSQITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASY-K---------DC--RSASILIRMSLLV  263 (323)
Q Consensus       196 ~~~~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~---------~~--~~~~~~~~~~~~~  263 (323)
                      +.+++.+++|+|+..+. .+++++.++..+.|||+.++...+.+|+-+.... +         ++  +-+.+.+|..+++
T Consensus       362 ~~TqevItnnLp~qsfk-~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~WgltlR~~lvv  440 (524)
T KOG4303|consen  362 ELTQEVITNNLPNQSFK-ILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKEWGLTLRIILVV  440 (524)
T ss_pred             hhhHHHHhcCCCccchh-hhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhhheeeeeeHHHH
Confidence            99999999999997665 6778999999999999999999999988765321 1         12  2335678999999


Q ss_pred             HHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceeeEEeEEEEEeC
Q 044509          264 STVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYELIGILAIMLLA  323 (323)
Q Consensus       264 ~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~ii~~~  323 (323)
                      .+.+.|+.+|++..+++++|+++++.++|+.|+++|++++++. ....|+..+..+++++
T Consensus       441 fTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~-L~~~e~~fD~~Ii~~G  499 (524)
T KOG4303|consen  441 FTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKT-LNNFEKRFDQGIIIMG  499 (524)
T ss_pred             HHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHh-hhhHHHhhheeEEEEe
Confidence            9999999999999999999999999999999999999998776 6667777777777664

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.92  E-value=1.3e-23  Score=196.78  Aligned_cols=305  Identities=14%  Similarity=0.138  Sum_probs=223.1

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP---   77 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~---   77 (323)
                      +.|+.++++|+|+|++|++++..|+. +++++++.+.++.++.+++.|+.++.+++..++.|++++.+||+++.+..   
T Consensus        15 vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~   94 (415)
T COG0814          15 VLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSY   94 (415)
T ss_pred             HHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHH
Confidence            57899999999999999999999988 99999999999999999999999999883359999999999999843210   


Q ss_pred             ---------------cccc-cc----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509           78 ---------------HFDL-KL----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA  137 (323)
Q Consensus        78 ---------------~~~~-~~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~  137 (323)
                                     .... +.    .+.+..+|+...++...++.++++.++...++..+.+....+.+.++.+.+...
T Consensus        95 ~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~~~~~~  174 (415)
T COG0814          95 FFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITSLLVFGKVIYLVLLVVYLIP  174 (415)
T ss_pred             HHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                           0000 00    111102366777788888888999999999999999998888777766665554


Q ss_pred             cccccc-cCccc--CCCCCChhhhhhhheeeccch-------------------hhhHHHHHHHHHHHHHHHhHHHhhcc
Q 044509          138 TKGVGF-HGKRR--LFNLNGIPTTLSLYTFCYGAH-------------------HVLLLSFVICTITYLTMAVLGYLIYG  195 (323)
Q Consensus       138 ~~~~~~-~~~~~--~~~~~~~~~~~~~~~faf~~~-------------------~~~~~~~~i~~~~y~~~g~~gy~~fG  195 (323)
                      ..+++. +..+.  ..++..+..++|.++|||+||                   |+...+..+..+.|...+.++|..+|
T Consensus       175 ~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~  254 (415)
T COG0814         175 HWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG  254 (415)
T ss_pred             ccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            322211 11111  356778899999999999999                   67777888889999999999999999


Q ss_pred             ccchhHhHhcCCCchhHH-------------HHHHHHHHHHHhhhhccchhHHHHHHHHhccc-ccCC---Cc--hhhhh
Q 044509          196 QNVQSQITLNLPIEQVSS-------------KVAIYTILAGPIAKYALTVMSIATAIERQLSA-SYKD---CR--SASIL  256 (323)
Q Consensus       196 ~~~~~~i~~n~~~~~~~~-------------~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~-~~~~---~~--~~~~~  256 (323)
                      +.+.++++++.++++...             ...+..-.+.+..||--+....+|..++.+.+ +.++   +.  .....
T Consensus       255 ~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~~r~~~~~~~~~~  334 (415)
T COG0814         255 SLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKPGRKKTGLLTFLP  334 (415)
T ss_pred             cccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcccchhhhhhhHHH
Confidence            999999999998764321             22233333333444333334444555555543 1111   11  12334


Q ss_pred             HHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509          257 IRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVY  306 (323)
Q Consensus       257 ~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~  306 (323)
                      ............+...|..+.+.+.+|+.....+.++.|...+.+....+
T Consensus       335 ~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~  384 (415)
T COG0814         335 PLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALK  384 (415)
T ss_pred             HHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcee
Confidence            44555666777888889999999999999999999999998887765443

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=99.79  E-value=1.3e-17  Score=155.43  Aligned_cols=303  Identities=16%  Similarity=0.194  Sum_probs=205.2

Q ss_pred             cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc------
Q 044509            5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP------   77 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~------   77 (323)
                      +..+++|+|+|+||.+.+..|.. +.+++++++..+.+|..++.|+..+.++ ..++.+++++.+||+++.+..      
T Consensus        12 i~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-~~~~~~~a~~~lG~~g~~~~~~~~~~~   90 (394)
T PF03222_consen   12 IAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-GSSLTSMAEKYLGKKGGIVIGISYLFL   90 (394)
T ss_pred             HHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHHHHHHHHHHHHH
Confidence            56799999999999999999988 9999999999999999999999988876 689999999999998842110      


Q ss_pred             ---------ccc---c-ccc----cccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccc-
Q 044509           78 ---------HFD---L-KLG----KLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATK-  139 (323)
Q Consensus        78 ---------~~~---~-~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~-  139 (323)
                               ...   . +..    +.+.+ ++.-.++..++...+... .-+...+.+..-+...+..++......+.+ 
T Consensus        91 ~y~ll~AYisg~g~~~~~~l~~~~~~~~~-~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv~~~i~~~~~l~~~~~p~~  168 (394)
T PF03222_consen   91 LYALLVAYISGGGSILSSLLGNQLGTDLS-PWLSSLLFTIIFGGIVYF-GTKAVDRINRVLVFGMIISFIILVVYLIPHW  168 (394)
T ss_pred             HHHHHHHHHHccHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence                     000   0 011    11122 222222233332222222 233445555444433333333333333211 


Q ss_pred             ccc--ccCcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHH--hHH-------
Q 044509          140 GVG--FHGKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMA--VLG-------  190 (323)
Q Consensus       140 ~~~--~~~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g--~~g-------  190 (323)
                      +.+  .+.++...++...+.+++..++||+.|                  |++..+..+..++|+..-  ..|       
T Consensus       169 ~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~  248 (394)
T PF03222_consen  169 NPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQF  248 (394)
T ss_pred             CHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHH
Confidence            111  111223467788889999999999998                  777888888888887643  333       


Q ss_pred             --Hhhccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHH
Q 044509          191 --YLIYGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV  266 (323)
Q Consensus       191 --y~~fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
                        -..-+++.++  ..+.+..++++...+...+-.+.+.+||--.....+|.+++.++.++  +...|........+.+.
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~~~--~~~~r~~~~~ltf~ppl  326 (394)
T PF03222_consen  249 AEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKLKN--NSSGRLKTWLLTFLPPL  326 (394)
T ss_pred             HHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc--cccchHHHHHHHHHhHH
Confidence              1122222221  23344444556667778888889999999999999999999987633  33455556667778899


Q ss_pred             HHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee
Q 044509          267 VLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL  313 (323)
Q Consensus       267 ~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~  313 (323)
                      ++|...|| +...+++.| .....+..++|+++.+|.+|++++.+++.
T Consensus       327 ~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~~~~~~~  373 (394)
T PF03222_consen  327 IFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKPKQPYRV  373 (394)
T ss_pred             HHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccCCCCeEE
Confidence            99999997 789999999 99999999999999999987764445553

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>TIGR00837 araaP aromatic amino acid transport protein

Probab=99.78  E-value=1.4e-17  Score=155.46  Aligned_cols=299  Identities=12%  Similarity=0.093  Sum_probs=204.6

Q ss_pred             ccccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc---
Q 044509            2 ILTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP---   77 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~---   77 (323)
                      +...+++++|+|++++|.++++.|+. +.+.+++.+..+.++...+.|+.++.|+ ..++.|.+++.+||++..+..   
T Consensus         3 ~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-~~~~~~~~~~~~G~~~g~~~~~~~   81 (381)
T TIGR00837         3 ALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-GASFNTIAKDLLGKTGNIIAGLSL   81 (381)
T ss_pred             eEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCHHHHHHHHHHH
Confidence            45678999999999999999999988 8888999999999999999999988875 579999999999998732210   


Q ss_pred             ---------------cccc-ccc----cccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509           78 ---------------HFDL-KLG----KLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA  137 (323)
Q Consensus        78 ---------------~~~~-~~~----~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~  137 (323)
                                     .... ++.    +...+ ++...++...++.++. .+..+..++++.+.+...+..++.++....
T Consensus        82 ~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~  159 (381)
T TIGR00837        82 LFVLYILTYAYISGGGSILSRLIGEYFGFPWS-ARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGKIIAFALVFSGLL  159 (381)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                           0000 011    11111 2223333333444443 457788888887776665555444333332


Q ss_pred             cc-cc-cccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509          138 TK-GV-GFHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQ  196 (323)
Q Consensus       138 ~~-~~-~~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~  196 (323)
                      .+ +. ...+.. ...++.+...+++...++|++|                  |+...+..++.++|+..........+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~  239 (381)
T TIGR00837       160 PHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQLATMGNLPR  239 (381)
T ss_pred             hhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence            21 11 111100 1124456777888888888776                  788889999999999876655544443


Q ss_pred             cchhHhH-------------hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHH
Q 044509          197 NVQSQIT-------------LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLV  263 (323)
Q Consensus       197 ~~~~~i~-------------~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                      +.-++..             .+.-++++...+......+.+..++.-...+.+|..++.++++++  +.+|.....+..+
T Consensus       240 ~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~--~~~~~~~~~~~~~  317 (381)
T TIGR00837       240 SEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDS--KKGRFKTGLLTFL  317 (381)
T ss_pred             HHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--cCCCchhhhhhHH
Confidence            2211111             111112234456667777888899999999999998888876443  2235666777788


Q ss_pred             HHHHHHhhcCchh-HHHHHhhhhHHHHHHHhhhhhhhhhhcccc
Q 044509          264 STVVLATVFPSFQ-SVTSLIGAFLKVVVSFLLPCVSYLNISEVY  306 (323)
Q Consensus       264 ~~~~~A~~vp~~~-~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~  306 (323)
                      .+.++|...|+.. ..++..| +..+.+.+++|++++++.+|++
T Consensus       318 ~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~~  360 (381)
T TIGR00837       318 PPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKKF  360 (381)
T ss_pred             hHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999866 8999999 8899999999999999987653

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PRK10483 tryptophan permease; Provisional

Probab=99.74  E-value=1.9e-16  Score=146.76  Aligned_cols=301  Identities=12%  Similarity=0.070  Sum_probs=203.1

Q ss_pred             cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------c-
Q 044509            5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------V-   76 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~-   76 (323)
                      +..|++|+|+|++|.+-++.|+. +++++++++....||..++.|+..+.++ ..++.+++++.+||+++.+      | 
T Consensus        20 IaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-g~~~~tma~~~LG~~g~~i~~~s~lfl   98 (414)
T PRK10483         20 IGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-GSSFDTITKDLLGKGWNVVNGISIAFV   98 (414)
T ss_pred             HHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence            56789999999999999999999 9999999999999999999999988765 6899999999999988321      0 


Q ss_pred             --------cccc---c-c-c--ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccccc
Q 044509           77 --------PHFD---L-K-L--GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGV  141 (323)
Q Consensus        77 --------~~~~---~-~-~--~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~  141 (323)
                              .+..   . + +  .+.+.+ ++.-.++++++.-.+... ..+...+.+..=+...+..++..+.....+ .
T Consensus        99 ~Y~Ll~AYisg~g~il~~~l~~~~~~i~-~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l~~~~i~~f~~~~~~l~~~-i  175 (414)
T PRK10483         99 LYILTYAYISASGSILHHTFAEMSLNVP-ARAAGFGFALLVAFVVWL-STKAVSRMTAIVLGAKVITFFLTFGSLLGH-V  175 (414)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence                    0000   0 0 0  111222 223333444444444443 446666666554444444443333222211 1


Q ss_pred             cc----cCc-ccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhh-----
Q 044509          142 GF----HGK-RRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLI-----  193 (323)
Q Consensus       142 ~~----~~~-~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~-----  193 (323)
                      +.    +.+ ....++.....+.+.+++||+.|                  |++..+..+..++|+..=......     
T Consensus       176 ~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~  255 (414)
T PRK10483        176 QPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGTLMALALYTIWLLATMGNIPRPE  255 (414)
T ss_pred             CHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence            11    111 11122345778999999999999                  788888899999998733222221     


Q ss_pred             ------ccccchh--HhHhcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHH
Q 044509          194 ------YGQNVQS--QITLNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVST  265 (323)
Q Consensus       194 ------fG~~~~~--~i~~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (323)
                            -|++.+.  +.+.+..+++....+..++..+.+.+||--.....+|.+++.++.+++  +..|...-....+.+
T Consensus       256 ~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~~~~--~~~r~~~~~ltflPP  333 (414)
T PRK10483        256 FIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGFDDS--AMGRFKTALLTFLPP  333 (414)
T ss_pred             HHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHhhH
Confidence                  2333321  112222334455566778888899999999999999999999876543  334555666788899


Q ss_pred             HHHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccccccccee
Q 044509          266 VVLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYE  312 (323)
Q Consensus       266 ~~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~  312 (323)
                      .++|...|| |-..++..|.. ...+.-++|+++.++.+|++..+.|+
T Consensus       334 l~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~  380 (414)
T PRK10483        334 VVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKRFGSPKFR  380 (414)
T ss_pred             HHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCce
Confidence            999999998 88999999976 66788899999999998763234454

>PRK09664 tryptophan permease TnaB; Provisional

Probab=99.73  E-value=4e-16  Score=144.49  Aligned_cols=302  Identities=13%  Similarity=0.137  Sum_probs=200.2

Q ss_pred             cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------c-
Q 044509            5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------V-   76 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~-   76 (323)
                      +..|++|+|+|++|.+-++.|+. +++++++++..+.||..++.|+..+.++ ..++.+++++.+||+++.+      | 
T Consensus        18 IaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-g~~l~tma~~~LG~~g~~i~~~~~~fl   96 (415)
T PRK09664         18 IAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-GSSFNTITKDLIGNTWNIISGITVAFV   96 (415)
T ss_pred             hhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCHHHHHHHHcChHHHHHHHHHHHHH
Confidence            56799999999999999999999 9999999999999999999999988876 6899999999999988321      0 


Q ss_pred             --------ccc-c--c-cc----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccc-
Q 044509           77 --------PHF-D--L-KL----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATK-  139 (323)
Q Consensus        77 --------~~~-~--~-~~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~-  139 (323)
                              .+. +  . +.    .+.+.+ ++.-.++++++.-++... ..+...+.+..=+...+..++..+.....+ 
T Consensus        97 ~Y~Ll~AYisggG~il~~~l~~~~~~~i~-~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l~~~~ii~f~~~~~~l~~~i  174 (415)
T PRK09664         97 LYILTYAYISANGAIISETISMNLGYHAN-PRIVGICTAIFVASVLWI-SSLAASRITSLFLGLKIISFVIVFGSFFFQV  174 (415)
T ss_pred             HHHHHHHHHhccHHHHHHHHhhhccCCCc-HHHHHHHHHHHHHHHHHh-chhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence                    000 0  0 01    111222 223334445555555444 346666666544433333333322222111 


Q ss_pred             ccc-ccCcccCC----CCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHH--HHhHH----
Q 044509          140 GVG-FHGKRRLF----NLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLT--MAVLG----  190 (323)
Q Consensus       140 ~~~-~~~~~~~~----~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~--~g~~g----  190 (323)
                      +++ ..+.+...    .+.....+++.+.+||+.|                  |++..+..+..++|+.  ....|    
T Consensus       175 ~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~  254 (415)
T PRK09664        175 DYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVVFGSLLALVIYLFWLYCTMGNIPR  254 (415)
T ss_pred             cHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence            111 11111111    0224677899999999999                  6677777777777753  22222    


Q ss_pred             -----HhhccccchhHhH--hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHH
Q 044509          191 -----YLIYGQNVQSQIT--LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLV  263 (323)
Q Consensus       191 -----y~~fG~~~~~~i~--~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (323)
                           -..-|+++++-+.  .+-.++++...+..++..+.+.+||--.....+|.+.+.++.+++  +..|...-.+.++
T Consensus       255 ~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~~~~--~~~r~~~~~ltfl  332 (415)
T PRK09664        255 ESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKIDNS--HGGRFKTVLLTFL  332 (415)
T ss_pred             HHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--cccceeeehhhHh
Confidence                 1233444433212  111334455667778888899999999999999999999876543  3346666667888


Q ss_pred             HHHHHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccccccccee
Q 044509          264 STVVLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYE  312 (323)
Q Consensus       264 ~~~~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~  312 (323)
                      .+.++|...|| |-..++..|.. .+.+.-++|+++-+|.+|++....++
T Consensus       333 PPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~~~y~  381 (415)
T PRK09664        333 PPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPNQMFT  381 (415)
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCCce
Confidence            99999999998 88999999986 66789999999999998763234444

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=99.71  E-value=4.6e-16  Score=144.61  Aligned_cols=296  Identities=13%  Similarity=0.131  Sum_probs=194.4

Q ss_pred             cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc-----
Q 044509            3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV-----   76 (323)
Q Consensus         3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~-----   76 (323)
                      +-+..|++|+|+|+||.+.+..|.. +.+++++++.+..|+.+.+.|+..+.++ ..++.+++++.+||++..+.     
T Consensus        10 ~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-~~~~~~~a~~~LG~~g~~i~~~~y~   88 (403)
T PRK15132         10 FIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-DTGLGTLAKRYLGRYGQWLTGFSMM   88 (403)
T ss_pred             HHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-CCCHHHHHHHHhChHHHHHHHHHHH
Confidence            4567899999999999999999988 9999999999899999999998777654 58999999999999883211     


Q ss_pred             ----c------cc--c-c-----ccccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc
Q 044509           77 ----P------HF--D-L-----KLGKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT  138 (323)
Q Consensus        77 ----~------~~--~-~-----~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~  138 (323)
                          +      ..  + .     ++.+.+.+.. ...+.+.++....... ..+...+.+..=+...+..++....... 
T Consensus        89 fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~-~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ii~~~~~~~~l~-  165 (403)
T PRK15132         89 FLMYALTAAYISGAGELLASSISDWTGISMSPT-AGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAKIIFLVVMLALMM-  165 (403)
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHhccCCCChH-HHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                0      00  0 0     0112222322 2222222222222222 3344555554433333332222222221 


Q ss_pred             ccccccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccccc-
Q 044509          139 KGVGFHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQNV-  198 (323)
Q Consensus       139 ~~~~~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~-  198 (323)
                      .+.+.+... ...+......+++.+.+||+.|                  |++..+..+..++|+..=......-+.+. 
T Consensus       166 p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~  245 (403)
T PRK15132        166 PHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTF  245 (403)
T ss_pred             HhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence            111111110 0112234889999999999999                  78888888888888865544443333221 


Q ss_pred             ----hh-----HhHhc---CCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHH
Q 044509          199 ----QS-----QITLN---LPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTV  266 (323)
Q Consensus       199 ----~~-----~i~~n---~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (323)
                          ++     +.+..   ..++++...+......+.+.+||--.....+|.+++.++++++  +..|.....+..+.+.
T Consensus       246 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~--~~~r~~~~~l~flppl  323 (403)
T PRK15132        246 MGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNT--VGGRLQTGLITFLPPL  323 (403)
T ss_pred             HHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcc--ccCCchhehhhHHHHH
Confidence                11     12222   2234455567778888899999999999999999998865433  3346667778889999


Q ss_pred             HHHhhcCc-hhHHHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509          267 VLATVFPS-FQSVTSLIGAFLKVVVSFLLPCVSYLNISEV  305 (323)
Q Consensus       267 ~~A~~vp~-~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~  305 (323)
                      ++|...|| +....++.|. ..+.+.+++|+++.+|.+|+
T Consensus       324 i~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~  362 (403)
T PRK15132        324 AFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQ  362 (403)
T ss_pred             HHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhc
Confidence            99999998 7889999886 57889999999999998764

>TIGR00814 stp serine transporter

Probab=99.51  E-value=9.9e-13  Score=122.62  Aligned_cols=316  Identities=12%  Similarity=0.086  Sum_probs=196.9

Q ss_pred             cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc----
Q 044509            3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP----   77 (323)
Q Consensus         3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~----   77 (323)
                      +.+..+++|+|+|++|...++.||. .++..++...+++++..++.|.....+++..++.|++++.+||++..+..    
T Consensus        10 ~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~   89 (397)
T TIGR00814        10 LGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYF   89 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHH
Confidence            5678899999999999999999999 67777778888889989899985554433589999999999998732110    


Q ss_pred             -----------ccccc----c----ccccccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc
Q 044509           78 -----------HFDLK----L----GKLTIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT  138 (323)
Q Consensus        78 -----------~~~~~----~----~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~  138 (323)
                                 ....+    +    ...+.+ .+....+..++..-....+..+.+.+++.+-+...+...+........
T Consensus        90 ~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p-~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip  168 (397)
T TIGR00814        90 FAIYPILLIYSVAITNDSASFLVNQLGTAPP-LRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIP  168 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       00000    0    111111 222222222222223334466666676665554433333333333322


Q ss_pred             cccccc---Cccc-CCCCCChhhhhhhheeeccch-------------------------hhhHHHHHHHHHHHHHHHhH
Q 044509          139 KGVGFH---GKRR-LFNLNGIPTTLSLYTFCYGAH-------------------------HVLLLSFVICTITYLTMAVL  189 (323)
Q Consensus       139 ~~~~~~---~~~~-~~~~~~~~~~~~~~~faf~~~-------------------------~~~~~~~~i~~~~y~~~g~~  189 (323)
                      + .+.+   ..|. ...+.++..+.+...+||.+|                         |+...+..+..++|+..-..
T Consensus       169 ~-~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s  247 (397)
T TIGR00814       169 H-WNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFS  247 (397)
T ss_pred             H-cCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1 1111   1111 112356788889999999887                         34566677777777776666


Q ss_pred             HHhhccccchh-----H--hHh---cCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcc----ccc--CCCchh
Q 044509          190 GYLIYGQNVQS-----Q--ITL---NLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLS----ASY--KDCRSA  253 (323)
Q Consensus       190 gy~~fG~~~~~-----~--i~~---n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~----~~~--~~~~~~  253 (323)
                      +-...+++.-.     |  .+.   |-.++++...+....-.+.+..||--+....+|.+++.+.    .++  .+++..
T Consensus       248 ~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~~~~~~~~~~~  327 (397)
T TIGR00814       248 CVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKMKGKKINIRKL  327 (397)
T ss_pred             HhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccccCHHHH
Confidence            65555543211     1  111   1123344455666667778889999999999998888772    111  123344


Q ss_pred             hhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee-EEeEEEEEeC
Q 044509          254 SILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL-IGILAIMLLA  323 (323)
Q Consensus       254 ~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~-~~~~~ii~~~  323 (323)
                      +.....+.++.+...|..=|++-.+++-+|+-....+.|++|...-.|..   ...++|. ..+++++++|
T Consensus       328 ~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v~---~l~~~~~~~~~~fv~~~g  395 (397)
T TIGR00814       328 NRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKVP---ALKKYRGRISNVFVTVIG  395 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHccH---HHHHhCCCcchheeEeee
Confidence            56677777888899999999999999977777777889999997766653   2333433 4466666543

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=99.38  E-value=5.7e-12  Score=117.20  Aligned_cols=299  Identities=13%  Similarity=0.106  Sum_probs=187.5

Q ss_pred             cccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc-----
Q 044509            3 LTGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV-----   76 (323)
Q Consensus         3 fnl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~-----   76 (323)
                      ..+..+.+|+|+|+||......|.. .++++++++.+++|+...+.|...+.+++..++.|++++.+||++..+.     
T Consensus        26 l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYf  105 (443)
T PRK13629         26 LGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYF  105 (443)
T ss_pred             HHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHH
Confidence            4567899999999999999999977 9999999999999999999998877633368999999999999883211     


Q ss_pred             ----c----------cccccc----ccc-cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecc
Q 044509           77 ----P----------HFDLKL----GKL-TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGA  137 (323)
Q Consensus        77 ----~----------~~~~~~----~~~-~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~  137 (323)
                          +          +...+.    .+. ..+ +....++...++...... .-+.+.+++..=+...+..++....+.+
T Consensus       106 f~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~-r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~~i~~l~~l~~~Li  183 (443)
T PRK13629        106 FAICPLLWIYGVTITNTFMTFWENQLGFAPLN-RGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWPFIASLVLISLSLI  183 (443)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCcCCcc-HHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                0          000000    111 122 333333333333333332 3355555554433333333333333332


Q ss_pred             cc--cccccCcc-----cCCCC---CChhhhhhhheeeccch----------------------------hhhHHHHHHH
Q 044509          138 TK--GVGFHGKR-----RLFNL---NGIPTTLSLYTFCYGAH----------------------------HVLLLSFVIC  179 (323)
Q Consensus       138 ~~--~~~~~~~~-----~~~~~---~~~~~~~~~~~faf~~~----------------------------~~~~~~~~i~  179 (323)
                      .+  .....+.+     ...+.   .....+++..++||+-|                            |++..+..+.
T Consensus       184 P~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~  263 (443)
T PRK13629        184 PYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLM  263 (443)
T ss_pred             HHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHH
Confidence            11  00011111     00011   13566778888887766                            4566777777


Q ss_pred             HHHHHHHHhHHHhhccccc-----hhHh--H----hcCCCc--------hhHHHHHHHHHHHHHhhhhccchhHHHHHHH
Q 044509          180 TITYLTMAVLGYLIYGQNV-----QSQI--T----LNLPIE--------QVSSKVAIYTILAGPIAKYALTVMSIATAIE  240 (323)
Q Consensus       180 ~~~y~~~g~~gy~~fG~~~-----~~~i--~----~n~~~~--------~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~  240 (323)
                      .++|+..-+.+-..-+++.     ++|.  +    +.+++.        +....+..+...+.+..||--+....+|.++
T Consensus       264 lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~  343 (443)
T PRK13629        264 VAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLN  343 (443)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7888776665555444322     1111  1    112221        3445566666777889999999999999887


Q ss_pred             Hhccc----ccC---CCchhhhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhc
Q 044509          241 RQLSA----SYK---DCRSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNIS  303 (323)
Q Consensus       241 ~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~  303 (323)
                      ....+    +++   +++..+.....++++.+...|..=|++-.+++-+|+-....+.|++|....+|..
T Consensus       344 gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp  413 (443)
T PRK13629        344 GLILKFGYKGDKTKVSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAP  413 (443)
T ss_pred             HHHHHHHhhccccccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccH
Confidence            77631    111   2334466777788888999999999999999977777788899999998777764

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=98.40  E-value=2.2e-05  Score=72.85  Aligned_cols=291  Identities=12%  Similarity=0.177  Sum_probs=153.3

Q ss_pred             ccchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc-----
Q 044509            4 TGFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP-----   77 (323)
Q Consensus         4 nl~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~-----   77 (323)
                      -++.+++|+|++.+|....+.+-- +.+..++.+.........+.+..++.|+  ++..|..++.+||+...++.     
T Consensus        11 l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~--~~~~~~~~~~~Gk~~g~~~~~~~~~   88 (359)
T TIGR00912        11 LISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE--KNFSEILSKYLGKILGRLLSILFIL   88 (359)
T ss_pred             HHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhhHHHHHHHHHHHHH
Confidence            356789999999999987664433 5555566777777778888888888887  68999999999997632211     


Q ss_pred             -----c-ccc----cccc-ccccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHh-hhheeeccccccccc
Q 044509           78 -----H-FDL----KLGK-LTIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT-VCAFCVGATKGVGFH  144 (323)
Q Consensus        78 -----~-~~~----~~~~-~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~-~~v~~~~~~~~~~~~  144 (323)
                           . ...    +... ...++...+.. +..++..-....+.++...+++.+-+...+... +.+......+ .+.+
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~l~~tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~~i~~~~~il~~~~~~~-~~~~  167 (359)
T TIGR00912        89 YFFLIAAYLIRIFADFIKTYLLPRTPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLIIFLILFILVLILLAPKL-GNIK  167 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-ccHH
Confidence                 0 000    0000 01111222322 222222223344577777777766554443331 2222212111 1111


Q ss_pred             C--cccCCCCCChhhhhh-hheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhccccchhHh--
Q 044509          145 G--KRRLFNLNGIPTTLS-LYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQI--  202 (323)
Q Consensus       145 ~--~~~~~~~~~~~~~~~-~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~~~~i--  202 (323)
                      .  |-...++.+...+.- ...++|.+.                 |....+..++..+|...-...-..+|.+..++.  
T Consensus       168 ~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~~~~~  247 (359)
T TIGR00912       168 NLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTKNLYW  247 (359)
T ss_pred             HccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhhhhcc
Confidence            1  111233444333332 555666543                 788888888889999888777777775432221  


Q ss_pred             -----HhcCCCchhHH---HHHHHHHHHHHhhhhccchhHHHHHHHHhcccccCCCchhhhhHHHHHHHHHHHHHhhcCc
Q 044509          203 -----TLNLPIEQVSS---KVAIYTILAGPIAKYALTVMSIATAIERQLSASYKDCRSASILIRMSLLVSTVVLATVFPS  274 (323)
Q Consensus       203 -----~~n~~~~~~~~---~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~vp~  274 (323)
                           .+...-++...   .+.-..-......+..+..+...+.+++.++.++.  +  ..+.....  +.+.++. .||
T Consensus       248 P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~--~~~~~~~-~~~  320 (359)
T TIGR00912       248 PTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFKKRKY--S--ILILPVLM--VIFSISF-FPD  320 (359)
T ss_pred             cHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc--c--hhHHHHHH--HHHHHHH-ccc
Confidence                 11111111211   11112233455666666777777888888765442  1  12222222  2333333 444


Q ss_pred             -hhH---HHHHhhhhHHHHHHHhhhhhhhhhhccc
Q 044509          275 -FQS---VTSLIGAFLKVVVSFLLPCVSYLNISEV  305 (323)
Q Consensus       275 -~~~---v~~lvGa~~~~~l~~i~P~l~~l~~~~~  305 (323)
                       .+.   ..+..+ ..+....+++|.++.+...-+
T Consensus       321 ~~~~~~~~~~~~~-~~~~~~~~~~P~ll~~i~~ik  354 (359)
T TIGR00912       321 SSNQLFDYLEFLP-IIAIVFFLLLPLILFIIVKIK  354 (359)
T ss_pred             hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence             332   112222 334456778999877766533

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG3832 consensus Predicted amino acid transporter [General function prediction only]

Probab=98.13  E-value=7.3e-06  Score=67.78  Aligned_cols=46  Identities=28%  Similarity=0.572  Sum_probs=42.1

Q ss_pred             cchhcccccccchhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhh
Q 044509            5 GFILTPGIDILSIPYALSSGGWL-SLIILVLIAATACFTALLLRQCM   50 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~   50 (323)
                      +.|.++|+|.|++|.+|+..||+ ++.++.+.+.+++.+....+++.
T Consensus        21 mfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfvieal   67 (319)
T KOG3832|consen   21 MFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEAL   67 (319)
T ss_pred             hhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778999999999999999999 99999999999999998888764

>PRK11021 putative transporter; Provisional

Probab=98.13  E-value=0.00061  Score=64.39  Aligned_cols=184  Identities=16%  Similarity=0.181  Sum_probs=97.5

Q ss_pred             cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc------cc-
Q 044509            5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK------DV-   76 (323)
Q Consensus         5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~------l~-   76 (323)
                      .+++++|+|++.+|. +.++.|-..+...++.+.........+.|...+.|+ .-...+-+++.+|++...      +. 
T Consensus        10 ~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG~y~y~~~~~G~~~gf~~gw~~~~~   88 (410)
T PRK11021         10 LSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHFPH-AGGPAHFVGMAFGPRLGRVTGWLFLSV   88 (410)
T ss_pred             HHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHhHHHHhCchhHHHHHHHHHHH
Confidence            468899999999994 555556435666677777777777778888887776 446666778889987621      00 


Q ss_pred             -----ccc---ccccccc--cccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeecccccccccC
Q 044509           77 -----PHF---DLKLGKL--TIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFHG  145 (323)
Q Consensus        77 -----~~~---~~~~~~~--~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~~  145 (323)
                           +..   ..+....  ..+....+.. +.....+-..-.+..+..++++....+..+............+..+.+.
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  168 (410)
T PRK11021         89 IPVGLPAALQIAAGFGQALFGWSSWQLLLAELLTLALLWLLNLRGASSSANLQTVIALLIVALVVAIWWAGDIKPADIPF  168 (410)
T ss_pred             HHhhHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhcCCC
Confidence                 000   0000000  0111111111 1111112222334555555544432222111111111111111111111


Q ss_pred             c-ccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhH
Q 044509          146 K-RRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVL  189 (323)
Q Consensus       146 ~-~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~  189 (323)
                      + ....++.++..++....|+|.+.                  |++..+..++.++|+.....
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        169 PAPGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             CCCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHH
Confidence            1 11234566778888889999876                  88888888899999987654

>PRK10655 potE putrescine transporter; Provisional

Probab=97.96  E-value=0.0013  Score=62.61  Aligned_cols=67  Identities=18%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++.+|...++.|-.+++..++.+.+......-+.|...+.|+ .-...+-.++.+|+..
T Consensus        17 ~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~GG~y~y~~~~~G~~~   83 (438)
T PRK10655         17 TAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGMFSRK-SGGMGGYAEYAFGKSG   83 (438)
T ss_pred             HHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-CCchHHHHHHHcCcch
Confidence            468899999999999898888656666777777777777777777766655 3455666678899865

>TIGR00909 2A0306 amino acid transporter

Probab=97.94  E-value=0.0013  Score=62.42  Aligned_cols=185  Identities=17%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             cchhcccccccchhHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------cc
Q 044509            5 GFILTPGIDILSIPYALS-SGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------VP   77 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~-~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~~   77 (323)
                      .+++++|+|++.+|.... ..|....+..++.+.........+.|..++.|+ .-...+-.++.+||+...+      +.
T Consensus        14 ~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~gw~~~~~   92 (429)
T TIGR00909        14 GIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAMLPV-AGSPYTYAYEAMGELTAFIIGWSLWLE   92 (429)
T ss_pred             HHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCcceeeHHHHhCcHHHHHHHHHHHHH
Confidence            357789999999996544 344434445566666776777778888877765 3355566677888865210      00


Q ss_pred             -----c-------cccc-ccc---cccccc--------ch--hHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhh
Q 044509           78 -----H-------FDLK-LGK---LTIDGR--------HA--FVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVC  131 (323)
Q Consensus        78 -----~-------~~~~-~~~---~~~~~~--------~~--~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~  131 (323)
                           .       ...+ +.+   .+.+..        ..  +..+...+..-....+..+..++++.+.....+...+.
T Consensus        93 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~  172 (429)
T TIGR00909        93 YGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGAKESGKVNDILVVLKVAALLL  172 (429)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence                 0       0000 000   111100        00  11122222223334456777777776655544443332


Q ss_pred             heeeccc--ccccccCcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHH
Q 044509          132 AFCVGAT--KGVGFHGKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGY  191 (323)
Q Consensus       132 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy  191 (323)
                      ++.....  +..++++. ...++.++..++....++|.+.                  |++..+..++.++|........
T Consensus       173 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       173 FAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             hhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            2222221  11122111 1224456677778888888765                  7888888899999998775443

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.87  E-value=0.0024  Score=61.08  Aligned_cols=66  Identities=15%  Similarity=0.178  Sum_probs=54.9

Q ss_pred             chhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +.+++|+|++-.|. +.++.|...++..++.+.+.......+.|...+.|+ .-...+-+++.+|+..
T Consensus         4 ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~P~-~Gg~y~y~~~~~G~~~   70 (446)
T PRK10197          4 IAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPD-TGSFSTYADKAIGRWA   70 (446)
T ss_pred             ecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHcChHH
Confidence            57899999999995 888888656777888888888888888898888776 4577888889999865

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.77  E-value=0.0031  Score=59.79  Aligned_cols=190  Identities=16%  Similarity=0.130  Sum_probs=98.4

Q ss_pred             cchhcccccccchhHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc------
Q 044509            5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATA-CFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP------   77 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~-~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~------   77 (323)
                      .++.++|+|+...| ...+.|....+..++.+.+. ........|..++.|+ .-...+-.++.+||+......      
T Consensus        10 ~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~g~~~~~~~~~~   87 (426)
T PF13520_consen   10 VIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSAYPS-AGGIYVWVSRAFGPFWGFIVGWLYWVA   87 (426)
T ss_dssp             HHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTS-STTHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC-cCeeeehhhhcccccchhcccceeEEE
Confidence            35678999999999 77777754443333333333 4455555666665555 456777888889987621100      


Q ss_pred             -------------ccccccccccccccc-hhHH--HHHHHHhhhcccccCCchhHHHHHHHHHHH-HHhhhheeec---c
Q 044509           78 -------------HFDLKLGKLTIDGRH-AFVV--LGGVMILPTMWLNDLGILSFVSAGGVLSSI-IVTVCAFCVG---A  137 (323)
Q Consensus        78 -------------~~~~~~~~~~~~~~~-~~~~--i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~-~~~~~v~~~~---~  137 (323)
                                   +......+.+.+... ...+  +..++..-..-.+..|..++.+.......+ ...+.++...   .
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~  167 (426)
T PF13520_consen   88 YILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSF  167 (426)
T ss_dssp             HHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             eeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeee
Confidence                         000011111221111 1122  222222223334456666666555444433 2211111111   1


Q ss_pred             c-cccc---c-cCcccCCCCCChhhhhhhheeeccch----------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509          138 T-KGVG---F-HGKRRLFNLNGIPTTLSLYTFCYGAH----------------HVLLLSFVICTITYLTMAVLGYLIYGQ  196 (323)
Q Consensus       138 ~-~~~~---~-~~~~~~~~~~~~~~~~~~~~faf~~~----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~  196 (323)
                      . +..+   . .+......+.+...++....|+|.+-                |++..+..++.++|......-....++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~  247 (426)
T PF13520_consen  168 SFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKNKTIPRAIIISIIIVAIIYILFSIALLGALPD  247 (426)
T ss_dssp             TCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTH
T ss_pred             cccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccchhheeecccchhHHHHHHhhhhheeeecccc
Confidence            1 1111   0 01112234456778889999999976                778888888889998887665555544

...

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.76  E-value=0.0025  Score=60.96  Aligned_cols=67  Identities=15%  Similarity=0.092  Sum_probs=45.4

Q ss_pred             cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++.+|....+.|...+...++.+.........+.|.....|+ .-...+-+++.+|+..
T Consensus        19 ~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~~P~-aGG~y~~~~~~~g~~~   85 (445)
T PRK10644         19 VAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSLDPS-PGGSYAYARRCFGPFL   85 (445)
T ss_pred             HHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHHHcCchH
Confidence            468999999999998888877433344444555555556666777777665 2234444777888865

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=97.76  E-value=0.0067  Score=58.08  Aligned_cols=67  Identities=19%  Similarity=0.241  Sum_probs=54.0

Q ss_pred             cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++.+| .+.++.|-.+.+..++.+.+......-+.|...+.|+ .-...+-+++.+|+..
T Consensus        23 ~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~Gg~~~~~~~~~g~~~   90 (452)
T TIGR01773        23 SIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVANPD-TGSFSTYADDAIGRWA   90 (452)
T ss_pred             HHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHH
Confidence            46789999999999 7788888656667777788888888888888877776 4577788889999876

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10746 putative transport protein YifK; Provisional

Probab=97.72  E-value=0.0092  Score=57.34  Aligned_cols=66  Identities=12%  Similarity=0.038  Sum_probs=50.6

Q ss_pred             chhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +..++|+|++..| .+.+.+|-..++..++.+++.+....-+.|.....|+ .-++.+-+++.+|+..
T Consensus        22 ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sGg~~~y~~~~~g~~~   88 (461)
T PRK10746         22 LGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLEPV-TGSFAVYAHRYMSPFF   88 (461)
T ss_pred             HHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHhCcHH
Confidence            5678999999988 6666777644455666777777777888888888776 5678888999999865

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.71  E-value=0.0035  Score=59.78  Aligned_cols=66  Identities=18%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++.+|...++.|-..+...++.++........+.|...+.|+ .-...+-+++ +|+..
T Consensus        16 ~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~GG~y~y~~~-~g~~~   81 (435)
T PRK10435         16 VAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QGGPIAYAGE-ISPAF   81 (435)
T ss_pred             HHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCChhHHHHH-HCcHH
Confidence            468899999999999999887545555566666666666777787777776 3344445555 67644

>PRK10249 phenylalanine transporter; Provisional

Probab=97.68  E-value=0.011  Score=56.79  Aligned_cols=67  Identities=13%  Similarity=0.041  Sum_probs=51.7

Q ss_pred             cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+..++|+|++..| .+.+++|-...+..++.+.+......-+.|...+.|+ .-...+-+++.+|+..
T Consensus        32 ~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~P~-~Gg~~~y~~~~~g~~~   99 (458)
T PRK10249         32 ALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEEPV-SGSFAHFAYKYWGPFA   99 (458)
T ss_pred             hhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhChHH
Confidence            46789999999999 4555667545566677788888888888898888876 4577778889999865

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.66  E-value=0.0069  Score=58.32  Aligned_cols=67  Identities=18%  Similarity=0.168  Sum_probs=47.8

Q ss_pred             cchhcccccccchhHHHH-hccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCC-CHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYALS-SGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTIT-SYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~-~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~-~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++.+|.... ..|.. .++..++.+.........+.|...+.|+ .. ...+-+++.+|+..
T Consensus        12 ~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~-~gGG~y~y~~~~fG~~~   81 (468)
T TIGR03810        12 VVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPE-LDGGVYSYAKAGFGPFM   81 (468)
T ss_pred             HHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCChhhhHHhHcCcHH
Confidence            468999999999997644 45544 3445667777777777777888777775 22 45666888999865

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=97.59  E-value=0.0023  Score=58.40  Aligned_cols=238  Identities=14%  Similarity=0.211  Sum_probs=125.7

Q ss_pred             cchhcccccccchhHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccc----
Q 044509            5 GFILTPGIDILSIPYALSSG---GWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVP----   77 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~---G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~----   77 (323)
                      +..+++|+|++.+|....+.   ||++.++   .+.....-..+..+..++.|+  ++..|..++.+||+...++.    
T Consensus        11 ~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll---~~~~~l~~~~l~~~l~~~~p~--~~l~~~~~~~~Gk~lg~ii~~~~~   85 (320)
T PF03845_consen   11 LISSIIGTGILFLPAILAEQAGDAWISVLL---GGLIGLLLALLIYYLLKRFPG--KTLVEISEKLFGKWLGKIINLLYI   85 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHHHHHHHHHHHHCCC--CCHHHHHHHHhCcHHHHHHHHHHH
Confidence            45788999999999887665   4764433   333444445566667777776  89999999999997633211    


Q ss_pred             -------cccc----cccc-ccccccchhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccccccccc
Q 044509           78 -------HFDL----KLGK-LTIDGRHAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGATKGVGFH  144 (323)
Q Consensus        78 -------~~~~----~~~~-~~~~~~~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~~~~~~~  144 (323)
                             ....    +... ...++...+.. ...++..--.-.+.++.+.+.+.+-....+...+.+...... +.+++
T Consensus        86 l~~l~~~~~~lr~~~~~i~~~~lp~TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~-~~~~~  164 (320)
T PF03845_consen   86 LYFLLISALVLREFSEFIKTYLLPETPIWVIILLFLLVAAYAARKGIEVIARVAEILFPIFLILLLLILLLSIP-NIDWD  164 (320)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-cCCHH
Confidence                   0000    0111 11111223332 222333333456677777775554443333333333322222 22222


Q ss_pred             Ccc--cCCCCCChhhhhhhheeeccch-----------------hhhHHHHHHHHHHHHHHHhHHHhhccccchhH----
Q 044509          145 GKR--RLFNLNGIPTTLSLYTFCYGAH-----------------HVLLLSFVICTITYLTMAVLGYLIYGQNVQSQ----  201 (323)
Q Consensus       145 ~~~--~~~~~~~~~~~~~~~~faf~~~-----------------~~~~~~~~i~~~~y~~~g~~gy~~fG~~~~~~----  201 (323)
                      +..  ...++.+...+.-...+.|.+-                 |....+.....++|...-+..-..||.+..++    
T Consensus       165 ~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~~~~~~~~P  244 (320)
T PF03845_consen  165 NLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGLFLLFIIFITIGVFGPELAKKLTYP  244 (320)
T ss_pred             HeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHhceecH
Confidence            211  2344445555544444444432                 66777777777777777777777777543221    


Q ss_pred             hH---hcCCCchhHHH---HHHHHHHHHHhhhhccchhHHHHHHHHhcccccC
Q 044509          202 IT---LNLPIEQVSSK---VAIYTILAGPIAKYALTVMSIATAIERQLSASYK  248 (323)
Q Consensus       202 i~---~n~~~~~~~~~---v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~  248 (323)
                      ..   +..+-++....   +.-..-......+..+..+-..+.+.+.++.+++
T Consensus       245 ~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~~~~~  297 (320)
T PF03845_consen  245 VLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFKLKDY  297 (320)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            11   11111111111   1112233455666677778888888888876543

A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=97.53  E-value=0.008  Score=57.94  Aligned_cols=69  Identities=17%  Similarity=0.093  Sum_probs=47.6

Q ss_pred             ccchhcccccccchhHHHHhcc-HH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            4 TGFILTPGIDILSIPYALSSGG-WL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         4 nl~~~~iG~GiL~lP~af~~~G-~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      -.+++++|+|++.+|....+.| -. .++..++.+.........+.|...+.|++.-...+-.++.+||+.
T Consensus        17 l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG~y~y~~~~~G~~~   87 (473)
T TIGR00905        17 LVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGGIYAYAREGFGPYI   87 (473)
T ss_pred             HHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCChhhhHHhHccccc
Confidence            3568999999999998877655 32 344456666666666777778777766522335556688999875

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.48  E-value=0.033  Score=54.83  Aligned_cols=183  Identities=15%  Similarity=0.178  Sum_probs=92.4

Q ss_pred             chhcccccccchhHHH--HhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc------cc-
Q 044509            6 FILTPGIDILSIPYAL--SSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK------DV-   76 (323)
Q Consensus         6 ~~~~iG~GiL~lP~af--~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~------l~-   76 (323)
                      +..++|+|++.+|-..  ...|-...+..++.+..+.....-..|...+.|+ .-+...-.++.+|+....      +. 
T Consensus        40 ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~P~-sGg~Y~y~~~~~G~~~gfi~GW~~~l~  118 (557)
T TIGR00906        40 IGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARVPK-AGSAYLYSYVTVGELWAFITGWNLILE  118 (557)
T ss_pred             hhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcceeeHHHHhCcHHHHHHHHHHHHH
Confidence            5678999999999543  3577443444556666666666666776666554 112222234456664310      00 


Q ss_pred             ---ccc--------c----cc--cc-------ccccc---ccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHh
Q 044509           77 ---PHF--------D----LK--LG-------KLTID---GRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT  129 (323)
Q Consensus        77 ---~~~--------~----~~--~~-------~~~~~---~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~  129 (323)
                         ...        .    ..  ..       +...+   .......+..++..-....+..+..++++.+.+...+...
T Consensus       119 ~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~ln~~Gik~s~~v~~i~~~iki~~l  198 (557)
T TIGR00906       119 YVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVLLSFGVKESAWVNKIFTAINILVL  198 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHH
Confidence               000        0    00  00       00001   0111111112222223345677777777766554433333


Q ss_pred             hhheeeccc--cccccc-----Cccc--CCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHH
Q 044509          130 VCAFCVGAT--KGVGFH-----GKRR--LFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTIT  182 (323)
Q Consensus       130 ~~v~~~~~~--~~~~~~-----~~~~--~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~  182 (323)
                      +.++..+..  +..+++     +.++  +.++.++..+.....|+|.+-                  |.+..+..++.++
T Consensus       199 ~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~r~iP~aii~sl~i~~vl  278 (557)
T TIGR00906       199 LFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGEEVKNPQRAIPIGIVTSLLVCFVA  278 (557)
T ss_pred             HHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHHhccCccccccHHHHHHHHHHHHH
Confidence            333333221  111111     1111  123345777788888999865                  7888899999999


Q ss_pred             HHHHHhH
Q 044509          183 YLTMAVL  189 (323)
Q Consensus       183 y~~~g~~  189 (323)
                      |..+...
T Consensus       279 Y~lv~~~  285 (557)
T TIGR00906       279 YFLMSAA  285 (557)
T ss_pred             HHHHHHH
Confidence            9887654

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.43  E-value=0.036  Score=53.47  Aligned_cols=67  Identities=18%  Similarity=0.083  Sum_probs=51.3

Q ss_pred             chhcccccccchh-HHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIP-YALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP-~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +..++|+|++..| .+.++.|..+ +...++.+.+......-+.|.....|+..-.|.+-+++.+|+..
T Consensus        14 vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~gG~~~~~~~~~~g~~~   82 (478)
T TIGR00913        14 LGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVSGSFATYASRFVDPAF   82 (478)
T ss_pred             HhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHcCcHH
Confidence            5679999999877 6777777554 55567777777777777888888887423478888999999875

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=97.41  E-value=0.032  Score=52.95  Aligned_cols=303  Identities=12%  Similarity=0.068  Sum_probs=156.5

Q ss_pred             ccccchhcccccccchhHHHHhc-cHH--HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc--
Q 044509            2 ILTGFILTPGIDILSIPYALSSG-GWL--SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV--   76 (323)
Q Consensus         2 ifnl~~~~iG~GiL~lP~af~~~-G~~--g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~--   76 (323)
                      ++.+++.++|+|++.-|.+..+. |-+  +.+.-++++.++.-+..-..|.-...++.--+|.=+.+ +||+....++  
T Consensus        20 v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELGT~ipksGgd~ayi~~-afg~~~aF~~~w   98 (479)
T KOG1287|consen   20 VSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGGDYAYISE-AFGPFPAFLFLW   98 (479)
T ss_pred             eeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCcchhhHHH-HhccchhHHHHH
Confidence            45678899999999999666554 444  56667899999999888888866554431123333333 5776542111  


Q ss_pred             -------ccc-c---ccc----ccc---cccccch-hHHHHHHHHhhhcccccCCchhHHHHHHHH---HHHHHhhhhee
Q 044509           77 -------PHF-D---LKL----GKL---TIDGRHA-FVVLGGVMILPTMWLNDLGILSFVSAGGVL---SSIIVTVCAFC  134 (323)
Q Consensus        77 -------~~~-~---~~~----~~~---~~~~~~~-~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~---~~~~~~~~v~~  134 (323)
                             ++. .   ..+    .+.   ..+..+. -.++.+.+...+.. +|....++.+.+=.+   +-+.+...++.
T Consensus        99 vs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~-~n~~~V~~a~~vq~~ft~~Kl~al~lIii  177 (479)
T KOG1287|consen   99 VSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTL-INSFSVKWATRVQIVFTIAKLLALLLIII  177 (479)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                   110 0   000    010   1121222 22333333334443 366666665544332   22222222322


Q ss_pred             ecc----ccccc---cc-CcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHh
Q 044509          135 VGA----TKGVG---FH-GKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAV  188 (323)
Q Consensus       135 ~~~----~~~~~---~~-~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~  188 (323)
                      .+.    ....+   .+ ......+..++..++-...|||.+=                  |++..++.++++.|+.+=+
T Consensus       178 ~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktLP~Ai~isi~lvt~iYil~Nv  257 (479)
T KOG1287|consen  178 TGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTLPRAILISIPLVTVIYVLVNV  257 (479)
T ss_pred             hchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccchHHHHHhhHHHHHHHHHhHh
Confidence            222    11111   11 2223455566788888888888864                  8899999999999998766


Q ss_pred             HHHhhccccchhHhHhc------CCC---chhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhccc---------ccCCC
Q 044509          189 LGYLIYGQNVQSQITLN------LPI---EQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSA---------SYKDC  250 (323)
Q Consensus       189 ~gy~~fG~~~~~~i~~n------~~~---~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~---------~~~~~  250 (323)
                      ..+.+-   +.|.++.+      +.+   +++. ...-+...++.+.+.--..+..-+.+...-.+         .++++
T Consensus       258 Ay~~vl---s~~e~l~S~aVav~Fa~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~  333 (479)
T KOG1287|consen  258 AYFTVL---SPDEILSSDAVAVTFADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRR  333 (479)
T ss_pred             heeEec---CHHHhcccchHHHHHHHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCC
Confidence            443222   22222211      100   1121 22333344444433332222221111111111         11101


Q ss_pred             chhhhhHHHHHHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhhhhhhhhhhcccccccceee
Q 044509          251 RSASILIRMSLLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLLPCVSYLNISEVYRNWGYEL  313 (323)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~~~~~~~~~~  313 (323)
                      ...+  ..+++.....++....+|++.+++.++=.-.....+.+=+++|++.+|++ .++.-|
T Consensus       334 ~TP~--~allf~~~~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~-~~rPiK  393 (479)
T KOG1287|consen  334 FTPR--PALLFSGLLSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP-LPRPIK  393 (479)
T ss_pred             CCCh--HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCCCEe
Confidence            0111  12233344445555667999999998877777888888899999988877 444433

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.39  E-value=0.035  Score=53.48  Aligned_cols=67  Identities=12%  Similarity=0.136  Sum_probs=46.4

Q ss_pred             cchhcccccccchh-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIP-YALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP-~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++..| .+.+++|...+...++++.+......-+.|.....+. ..++.+.+++.+|+..
T Consensus        31 ~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~~s~aEl~s~~~~-~~~~~~ya~~~~g~~~   98 (469)
T PRK11049         31 AIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVMRAMGELLLSNLE-YKSFSDFASDLLGPWA   98 (469)
T ss_pred             HHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCcHHHHHHHHhCcHH
Confidence            36789999999987 5788888643444555566565555556666554444 3567788999999865

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.38  E-value=0.06  Score=51.62  Aligned_cols=67  Identities=12%  Similarity=0.115  Sum_probs=49.5

Q ss_pred             cchhcccccccchhHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYA-LSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~a-f~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+.+++|+|++.+|.. .+.+|-...+..++.+........-+.|...+.|+ .-...+-+++.+|+..
T Consensus        20 ~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~Gg~y~y~~~~~G~~~   87 (457)
T PRK10580         20 ALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-ASSFSRYAQENLGPLA   87 (457)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHcCcHH
Confidence            4678899999999854 56666545566677777777777778888877775 4566667788899865

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.34  E-value=0.065  Score=51.42  Aligned_cols=67  Identities=12%  Similarity=0.060  Sum_probs=47.9

Q ss_pred             cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+++++|+|++-.|. +.+++|-..+...++.+........-+.|...+.|. .-++.+-+++.+|+..
T Consensus        23 ~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aGg~y~~~~~~~g~~~   90 (456)
T PRK10238         23 ALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEEPV-AGSFSHFAYKYWGSFA   90 (456)
T ss_pred             HhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHcCcHH
Confidence            367899999999984 555556423445666677777777777888777776 4567777788899865

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.33  E-value=0.048  Score=52.52  Aligned_cols=67  Identities=12%  Similarity=0.074  Sum_probs=49.9

Q ss_pred             cchhcccccccchhHH-HHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPYA-LSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~a-f~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .++.++|+|++..|.. .+.+|-. ..+..++.+.+......-+.|...+.|+ .-.+.+-.++.+|+..
T Consensus        25 ~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aGG~y~y~~~~~g~~~   93 (471)
T PRK11387         25 SLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TGAFHVYAARYLGPAT   93 (471)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHhcChHH
Confidence            3578999999988854 5677754 4555677777777777777888887776 4567778888899865

>PRK15049 L-asparagine permease; Provisional

Probab=97.31  E-value=0.038  Score=53.71  Aligned_cols=67  Identities=13%  Similarity=0.127  Sum_probs=52.8

Q ss_pred             cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+..++|+|++..|. +.++.|-.+++..++.+.+......-+.|.....|+ .-...+-+++.+|++.
T Consensus        39 ~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~P~-aGg~y~y~~~~~G~~~  106 (499)
T PRK15049         39 AIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHRPS-SGSFVSYAREFLGEKA  106 (499)
T ss_pred             hhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHHhCcHh
Confidence            357899999999985 777788656666777788888888888898888876 5677778888999865

>PRK10836 lysine transporter; Provisional

Probab=97.30  E-value=0.076  Score=51.43  Aligned_cols=67  Identities=15%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             cchhcccccccchhH-HHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            5 GFILTPGIDILSIPY-ALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         5 l~~~~iG~GiL~lP~-af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      .+.+++|+|++..|. +.++.|-. .+...++.+++......-+.|...+.|+ .-...+-+++.+|+..
T Consensus        26 ~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg~y~y~~~~~g~~~   94 (489)
T PRK10836         26 AIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGSFATYGQNYVEEGF   94 (489)
T ss_pred             HHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHcChHH
Confidence            467899999999994 77788865 5667788888888888888998888876 4455555666666543

>TIGR00930 2a30 K-Cl cotransporter

Probab=97.13  E-value=0.096  Score=54.73  Aligned_cols=66  Identities=14%  Similarity=0.167  Sum_probs=47.2

Q ss_pred             chhcccccccchh-HHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhh-CCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIP-YALSSGGWL-SLIILVLIAATACFTALLLRQCMDK-DPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP-~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~-~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +.+++|+|++--| +...++|.. +.+..+++++++..+..=+.+.+.. .++ .-.-....++++|+..
T Consensus        89 ~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~-aGG~Y~yisralGp~~  157 (953)
T TIGR00930        89 LLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVK-GGGAYYLISRSLGPEF  157 (953)
T ss_pred             hHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-ccHHHHHHHHHhCcHH
Confidence            6788999997665 777899977 7888888888888888877776654 332 1223344566777743

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.04  E-value=0.081  Score=50.52  Aligned_cols=64  Identities=13%  Similarity=0.029  Sum_probs=39.0

Q ss_pred             chhcccccccchhHH-HHhccH-H-HHHHHHHHHHHHHHHHHHHHHhhhhCCCC--CCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIPYA-LSSGGW-L-SLIILVLIAATACFTALLLRQCMDKDPDT--ITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP~a-f~~~G~-~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~--~~~y~~l~~~~~G~~~   72 (323)
                      +..++|+|++..|.. .++.|- . .+...++.+.+......-..|.....|+.  ...|   .++.+|+..
T Consensus        20 vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~~GG~y~y---~~~~~g~~~   88 (445)
T PRK11357         20 VGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPENGADYVY---LKNAGSRPL   88 (445)
T ss_pred             HHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCceee---HHHhcCChh
Confidence            456789999999976 445563 2 34445555666666666666666555431  2344   346677754

>TIGR00911 2A0308 L-type amino acid transporter

Probab=97.03  E-value=0.12  Score=50.16  Aligned_cols=66  Identities=18%  Similarity=0.170  Sum_probs=44.6

Q ss_pred             chhcccccccchhHH-HHhccHHH--HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIPYA-LSSGGWLS--LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP~a-f~~~G~~g--~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +++++|+|++..|.. .+++|-.|  .+..++.+.........+.|.....|+ .-...+-.++.+|+..
T Consensus        54 vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sGG~y~~~~~~~g~~~  122 (501)
T TIGR00911        54 VGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SGGEYNYILEVFGPLL  122 (501)
T ss_pred             eeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhHHhHhCCHH
Confidence            467899999999965 56667433  334456666777777777888777765 2344555566788864

>TIGR00908 2A0305 ethanolamine permease

Probab=96.94  E-value=0.25  Score=47.14  Aligned_cols=65  Identities=18%  Similarity=0.211  Sum_probs=44.1

Q ss_pred             hhcccccccchhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            7 ILTPGIDILSIPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         7 ~~~iG~GiL~lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      ..++|......+.+.++.|+.+ +...++.+........-+.|...+.|+ .-...+-+++.+|+..
T Consensus        20 ~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~Gg~y~~~~~~~G~~~   85 (442)
T TIGR00908        20 GYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AGGGYGFARRAFGPWG   85 (442)
T ss_pred             HHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCCHHHHHHHHhCcHH
Confidence            4456644455678888999874 344555555666666667888877776 4566667788999865

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.38  E-value=1  Score=43.76  Aligned_cols=65  Identities=18%  Similarity=0.131  Sum_probs=39.1

Q ss_pred             chhcccccccchhHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIPYALSSGGWLSLIILVLIAATA-CFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~-~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +++++|.+  .+|.++++.|..+++..++.+.+. .-....+.|.....|+..-.-.+=.++.+|++.
T Consensus        19 ~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aGG~Y~w~~~~~G~~~   84 (496)
T PRK15238         19 FTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAFKDEKGGIYSWMNKSVGPKF   84 (496)
T ss_pred             HHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHcCchH
Confidence            35666755  569889998876555555555443 334445667766655311345555666788765

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=96.19  E-value=0.09  Score=49.43  Aligned_cols=294  Identities=16%  Similarity=0.163  Sum_probs=146.0

Q ss_pred             hhccccccc-chhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccc------cc--
Q 044509            7 ILTPGIDIL-SIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKD------VP--   77 (323)
Q Consensus         7 ~~~iG~GiL-~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l------~~--   77 (323)
                      ...||+|.+ .--.+.+.+|--=++.-+++|.+.+.=++.|.|...++|+ ..++.|.+++.+|+++...      +.  
T Consensus        26 GGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~-~gSF~~~a~~~lG~~Agf~tgW~YW~~wv  104 (462)
T COG1113          26 GGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPV-SGSFSDYARKYLGPWAGFLTGWTYWFFWV  104 (462)
T ss_pred             hhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            456777754 2223444444323444678888899999999999988887 7899999999999987211      00  


Q ss_pred             -ccccc------cccccccccchhHHH--HHHHHhh--hcccccCCchhHH-HHHHHHHHHHHhhh---heeecccccc-
Q 044509           78 -HFDLK------LGKLTIDGRHAFVVL--GGVMILP--TMWLNDLGILSFV-SAGGVLSSIIVTVC---AFCVGATKGV-  141 (323)
Q Consensus        78 -~~~~~------~~~~~~~~~~~~~~i--~~~i~~p--l~~~~~l~~l~~~-s~~~~~~~~~~~~~---v~~~~~~~~~-  141 (323)
                       ....+      ..+.+.++...|+..  ..++..-  +.-.|...++.++ +.+=+++++..++.   .+...+..+. 
T Consensus       105 ~v~~ae~tAi~~y~~~WfP~vP~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~g~~~~~~  184 (462)
T COG1113         105 LVGIAELTAIGIYLQFWFPDVPQWVFALAAVVLLLAVNLISVKVFGELEFWFALIKVAAIIAFIVVGIVLLFGGFGGGGG  184 (462)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCC
Confidence             00001      122344444455432  2222222  3445666666553 33333333332221   2222222211 


Q ss_pred             --ccc---Ccc--cCCCCCChhhhhhhheeeccch------------------hhhHH-----HHHHHHHHHHHHHhHHH
Q 044509          142 --GFH---GKR--RLFNLNGIPTTLSLYTFCYGAH------------------HVLLL-----SFVICTITYLTMAVLGY  191 (323)
Q Consensus       142 --~~~---~~~--~~~~~~~~~~~~~~~~faf~~~------------------~~~~~-----~~~i~~~~y~~~g~~gy  191 (323)
                        +.+   +++  .+..+.++..++-..+|||++.                  |+.+-     ..+-+..+.+.+.+.-+
T Consensus       185 ~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW  264 (462)
T COG1113         185 AAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPKAINSVIWRILIFYVGSLFVILSLYPW  264 (462)
T ss_pred             CccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHHHHhhhhHHHHHHHHHHHHHHheeccc
Confidence              111   122  2556778889999999999987                  32222     22223333445555556


Q ss_pred             hhccccchhHhH--hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc---------cCCC-chhhhhHHH
Q 044509          192 LIYGQNVQSQIT--LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS---------YKDC-RSASILIRM  259 (323)
Q Consensus       192 ~~fG~~~~~~i~--~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~---------~~~~-~~~~~~~~~  259 (323)
                      -.++++.++-+.  .... -+....+.|+......+.+.-=-.+..-+.+..+-.+.         +|++ .+.-+.+..
T Consensus       265 ~~~~~~~SPFV~~f~~iG-i~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk~~~klsk~gVP~~ai~~s~  343 (462)
T COG1113         265 NQIGEDGSPFVTVFSLIG-IPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPKAFAKLSKRGVPVNAILLSA  343 (462)
T ss_pred             cccCCCCCcHHHHHHHcC-CcccccceeEEEeechhhcccccccccchHHHHHhhcCcccHhHhhccccCCCHHHHHHHH
Confidence            555554333222  2221 11222222322222222222222222223333322111         1111 223466777


Q ss_pred             HHHHHHHHHHhhcCc--hhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509          260 SLLVSTVVLATVFPS--FQSVTSLIGAFLKVVVSFLLPCVSYLNISE  304 (323)
Q Consensus       260 ~~~~~~~~~A~~vp~--~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~  304 (323)
                      +...+..++....|+  ++.+.+..+..  ......+=.+.|+|.+|
T Consensus       344 ~~~~~~V~Lny~~P~~vF~~v~s~s~~~--~l~vW~~I~~s~l~~rk  388 (462)
T COG1113         344 VVLLLGVVLNYILPEKVFELVTSSSGLG--LLFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHh
Confidence            777888888889993  44555443332  22344455667888776

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=95.41  E-value=2.2  Score=40.61  Aligned_cols=66  Identities=14%  Similarity=0.109  Sum_probs=41.6

Q ss_pred             chhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +.+++|.|++.+|......+.......++.+.+.........|...+.++ .-.+.+-.++.+|++.
T Consensus        25 ~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~GG~y~~~~~~~g~~~   90 (466)
T COG0531          25 VGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSSAIPS-AGGAYAYAKRALGPRL   90 (466)
T ss_pred             HHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCeeeehhhhcCcch
Confidence            45678899999998888775112222344444444445666666665554 3456777788888754

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=93.16  E-value=0.23  Score=47.85  Aligned_cols=66  Identities=12%  Similarity=0.146  Sum_probs=50.4

Q ss_pred             chhcccccccc-hhHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509            6 FILTPGIDILS-IPYALSSGGWL-SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus         6 ~~~~iG~GiL~-lP~af~~~G~~-g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      +..++|+|.+. .+.+..+.|.. ..+..++.++....+..-+.|..++.++ .-++.+.+++.+|+..
T Consensus         7 ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p~-~Gg~y~y~~~~lg~~~   74 (478)
T PF00324_consen    7 IGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFPS-AGGFYAYASRGLGPAL   74 (478)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhcc-ccchhhhhhhccCCcC
Confidence            45677888764 45788888887 6667788888888888888888888775 5577788888999865

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG3949 Uncharacterized membrane protein [Function unknown]

Probab=92.87  E-value=7.2  Score=35.43  Aligned_cols=68  Identities=19%  Similarity=0.088  Sum_probs=51.8

Q ss_pred             cchhcccccccchhHH---HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccc
Q 044509            5 GFILTPGIDILSIPYA---LSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEK   74 (323)
Q Consensus         5 l~~~~iG~GiL~lP~a---f~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~   74 (323)
                      .+.+++|+|-=+==--   |..-|+-|+.-.++++.+-..++....+..++.+.  .+|+|.-++.+|++..+
T Consensus        12 ~ig~~vGAGfAsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a--~~y~~~~~~v~~~~~~k   82 (349)
T COG3949          12 FIGTVVGAGFASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNA--TSYREILKYVSGPKFAK   82 (349)
T ss_pred             HHHHhhcccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcc--cchHHHHHHHhhHHHHH
Confidence            3456777776553333   33445557888888888888999999999999886  99999999999998743

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=92.80  E-value=9.6  Score=36.69  Aligned_cols=58  Identities=17%  Similarity=0.193  Sum_probs=32.7

Q ss_pred             cccchhHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc
Q 044509           13 DILSIPYALSSGGWLSLIILVLIAATAC-FTALLLRQCMDKDPDTITSYIDIVGHAFGHKD   72 (323)
Q Consensus        13 GiL~lP~af~~~G~~g~~~l~~~~~~~~-~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~   72 (323)
                      ++-.+|.+ ++.|...++..++.+.+.. -......|.....|+ .-...+-.++.+|++.
T Consensus        18 ~~~~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~GG~y~~~~~a~G~~~   76 (474)
T TIGR03813        18 SLRGLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KGGVFRWVGEAFGARW   76 (474)
T ss_pred             HhhcchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCceeeHhhhcChhH
Confidence            45556755 6777654444444444332 244455666666655 3455566677888765

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]

Probab=91.66  E-value=11  Score=36.39  Aligned_cols=109  Identities=16%  Similarity=0.204  Sum_probs=50.8

Q ss_pred             HHHhHHHhhccccc--hhHhHhcCCCchhHHHHHHHHHHHHHhhhhc-cch-hHHHHHHHHhcccccCCCchhhhhHHHH
Q 044509          185 TMAVLGYLIYGQNV--QSQITLNLPIEQVSSKVAIYTILAGPIAKYA-LTV-MSIATAIERQLSASYKDCRSASILIRMS  260 (323)
Q Consensus       185 ~~g~~gy~~fG~~~--~~~i~~n~~~~~~~~~v~~~~~~i~~~~s~p-l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (323)
                      ..+..++..||++.  +.++..+++++....-++-+.+++..+..-- -.. -|..| +...+++.-+-+|-..+.....
T Consensus       294 v~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~aN~vsp~~D-~s~l~Pk~in~krg~liaA~ia  372 (497)
T COG1953         294 VVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAANIVSPGYD-LSALFPKYINIKRGGLIAAIIA  372 (497)
T ss_pred             hHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHhccCChHHH-HHHhcccccchhhhHHHHHHHH
Confidence            34456688999984  5577788876533221222222222221111 111 22333 4444443221111122233333


Q ss_pred             HHHHHHHHHhhcCchhHHHHHhhhhHHHHHHHhh
Q 044509          261 LLVSTVVLATVFPSFQSVTSLIGAFLKVVVSFLL  294 (323)
Q Consensus       261 ~~~~~~~~A~~vp~~~~v~~lvGa~~~~~l~~i~  294 (323)
                      +.+.+.-+=..-..+...++..|++.+....-++
T Consensus       373 l~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmi  406 (497)
T COG1953         373 LLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMI  406 (497)
T ss_pred             HHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444445567777766777666555444

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=89.63  E-value=23  Score=35.02  Aligned_cols=295  Identities=16%  Similarity=0.170  Sum_probs=140.8

Q ss_pred             chhcccccccc-hhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccc-----cc---
Q 044509            6 FILTPGIDILS-IPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDE-----KD---   75 (323)
Q Consensus         6 ~~~~iG~GiL~-lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~-----~l---   75 (323)
                      +.+++|+|++= ...+.++.|-.+ ++-.++.+.....+..=+.|..-+.|...-++..-+++..|+...     +.   
T Consensus        42 iGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs~~~ya~~~i~e~~aF~~gWny~l~  121 (554)
T KOG1286|consen   42 IGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGSFYTYAYRFVGESLAFAIGWNYLLE  121 (554)
T ss_pred             ecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccccceeeeeeeeCcHHHHHHHHHHHHH
Confidence            46788999864 457788888764 445677777788888878887777775112233334444554330     00   


Q ss_pred             --c--cc------cccc-cc-------c-ccccccchhH--HHHHHHHhhhcccccCCchhHHHHHH----HHHHHHHhh
Q 044509           76 --V--PH------FDLK-LG-------K-LTIDGRHAFV--VLGGVMILPTMWLNDLGILSFVSAGG----VLSSIIVTV  130 (323)
Q Consensus        76 --~--~~------~~~~-~~-------~-~~~~~~~~~~--~i~~~i~~pl~~~~~l~~l~~~s~~~----~~~~~~~~~  130 (323)
                        .  +.      ..++ +.       . ...+ .-.|.  ....++.+-+.-.|-..+.++.....    .+..+. ..
T Consensus       122 y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~-~~~~~~~fla~~v~in~~gv~~~ge~ef~~~~~kvl~~v~~~I-l~  199 (554)
T KOG1286|consen  122 YVIGLAAEARAWSSYLDYWTGASLIGILVDTVN-PGGWIPDFLAFILIINLFGVLAYGEVEFSLAFNKILTAVGFII-LA  199 (554)
T ss_pred             HHHhhhHHHHHHHHHHHHHhccccccccccCCC-CCccHHHHHHHHHHHHHHHHhhccceeehHHHHHHHHHHHHHH-hh
Confidence              0  00      0001 10       0 0111 11222  22233333333344433333333222    222222 22


Q ss_pred             hheeec-ccccc-cc------cCccc--CCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHH
Q 044509          131 CAFCVG-ATKGV-GF------HGKRR--LFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTIT  182 (323)
Q Consensus       131 ~v~~~~-~~~~~-~~------~~~~~--~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~  182 (323)
                      +++..+ ..++. ++      +++..  +..+.++...+-+..|+|.+-                  ++...++..+..+
T Consensus       200 iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP~k~IP~ai~~s~~ri~~~  279 (554)
T KOG1286|consen  200 IVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEEAKNPRKAIPKAIKQSLLRILLF  279 (554)
T ss_pred             eeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHhccCCcccccHHHHHHHHHHHHH
Confidence            222333 22221 22      22222  233788889999999999976                  7788889999999


Q ss_pred             HHHHHhHH-Hh-hcccc-chhHh-----H---hcCCCchhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc-----
Q 044509          183 YLTMAVLG-YL-IYGQN-VQSQI-----T---LNLPIEQVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS-----  246 (323)
Q Consensus       183 y~~~g~~g-y~-~fG~~-~~~~i-----~---~n~~~~~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~-----  246 (323)
                      |....+.- -. -|.|. ..++.     .   .+...-+....+.+....+.+..+----.++.-+.+..+-++.     
T Consensus       280 Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~  359 (554)
T KOG1286|consen  280 YILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGLAPKF  359 (554)
T ss_pred             HHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCCcchH
Confidence            99877632 21 22220 11111     0   0111111111244555555555554444555555444443221     


Q ss_pred             --cCCCchhhhhHHHHHHHHHHHHHhhcCc-----hhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509          247 --YKDCRSASILIRMSLLVSTVVLATVFPS-----FQSVTSLIGAFLKVVVSFLLPCVSYLNISE  304 (323)
Q Consensus       247 --~~~~~~~~~~~~~~~~~~~~~~A~~vp~-----~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~  304 (323)
                        +-+++-.-+....+..+...+.++....     ++.++++.|-  ++.+++..=++.|+..++
T Consensus       360 f~~v~~~g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~si--~tl~~w~~i~~~~i~~R~  422 (554)
T KOG1286|consen  360 FARVDRRGVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSSI--GTLFAWTLVALSHLRFRY  422 (554)
T ss_pred             HhhcCCCCCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHhH--HHHHHHHHHHHHHeeeee
Confidence              0111211223333333444444444433     6888888764  444566666666666654

>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]

Probab=83.87  E-value=45  Score=32.58  Aligned_cols=296  Identities=14%  Similarity=0.147  Sum_probs=156.0

Q ss_pred             chhccccccc-chhHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccc---------c
Q 044509            6 FILTPGIDIL-SIPYALSSGGWLS-LIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDE---------K   74 (323)
Q Consensus         6 ~~~~iG~GiL-~lP~af~~~G~~g-~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~---------~   74 (323)
                      +...||+|.+ +.-.+.+++|-.| ++.-++++.+.+..+.=|.|.+-..|. .-++.+-+.+..++...         +
T Consensus        56 iGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P~-sGsF~~ya~rfvdpa~GFa~gWnYw~~  134 (541)
T COG0833          56 IGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYPV-SGSFSTYATRFVDPAFGFALGWNYWLN  134 (541)
T ss_pred             hccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCchhhhhhhhcCchHHHHHHHHHHHH
Confidence            4567888874 7779999999884 666899999999999999999988885 45688888888776431         0


Q ss_pred             cccccccc------cccccc-c--ccchhHHHHHHHHhhh--cccccCCchhH-HHHHHHHHHHHHhhh--heeecccc-
Q 044509           75 DVPHFDLK------LGKLTI-D--GRHAFVVLGGVMILPT--MWLNDLGILSF-VSAGGVLSSIIVTVC--AFCVGATK-  139 (323)
Q Consensus        75 l~~~~~~~------~~~~~~-~--~~~~~~~i~~~i~~pl--~~~~~l~~l~~-~s~~~~~~~~~~~~~--v~~~~~~~-  139 (323)
                      .......+      ....+. +  ....|+.++.++++-+  .-.|...+..+ +|.+=+++++..+++  ++..+..+ 
T Consensus       135 w~v~~~~El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii~gii~~~Gg~~~  214 (541)
T COG0833         135 WAVTLPLELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFIILGIIIICGGGPT  214 (541)
T ss_pred             HHHHhhHHHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            11000111      111121 1  1335666655555444  34566666554 344444443333332  22222221 


Q ss_pred             -cc---c-ccCcc-cCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHh-HHHh-h
Q 044509          140 -GV---G-FHGKR-RLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAV-LGYL-I  193 (323)
Q Consensus       140 -~~---~-~~~~~-~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~-~gy~-~  193 (323)
                       ++   . ++++. ...++.++...+-+..|+|.+.                  |++.-.+.=..++|+..-+ .|.. -
T Consensus       215 ~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkAik~vfwRIl~FYi~si~~ig~lvP  294 (541)
T COG0833         215 HGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKAIKQVFWRILLFYILSIFVIGLLVP  294 (541)
T ss_pred             CCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHHHHHHHHHHHHHHHHHHHHheEEcc
Confidence             11   1 12222 3456677888888999999986                  5555555556666664332 2222 2


Q ss_pred             cccc----------chhHhHhcCCCc--hhHHHHHHHHHHHHHhhhhccchhHHHHHHHHhcccc---------cCCCch
Q 044509          194 YGQN----------VQSQITLNLPIE--QVSSKVAIYTILAGPIAKYALTVMSIATAIERQLSAS---------YKDCRS  252 (323)
Q Consensus       194 fG~~----------~~~~i~~n~~~~--~~~~~v~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~---------~~~~~~  252 (323)
                      |.|.          .+++....+.+.  +....+.|..++.+++.+--=-++..-+.+.++-++.         +++.++
T Consensus       295 y~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~f~~~~r~GvP  374 (541)
T COG0833         295 YNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSRMLYSLAKQGKAPKIFAKVDRRGVP  374 (541)
T ss_pred             CCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCCCchHHHhhCCCCCc
Confidence            3221          011111111111  1223444544444444333333344444444443321         222334


Q ss_pred             h-hhhHHHHHHHHHHHHHhhcC--chhHHHHHhhhhHHHHHHHhhhhhhhhhhcc
Q 044509          253 A-SILIRMSLLVSTVVLATVFP--SFQSVTSLIGAFLKVVVSFLLPCVSYLNISE  304 (323)
Q Consensus       253 ~-~~~~~~~~~~~~~~~A~~vp--~~~~v~~lvGa~~~~~l~~i~P~l~~l~~~~  304 (323)
                      . -+.++.++-+++++-+..-.  -++-++++.|-..  .++.+-=++.|++-+|
T Consensus       375 ~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~s~--~i~W~~I~~shirFR~  427 (541)
T COG0833         375 LVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGLSG--FIAWGSICLSHIRFRR  427 (541)
T ss_pred             hHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            4 34555555566665555522  2677777776443  3455666777777664

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=83.07  E-value=48  Score=32.31  Aligned_cols=59  Identities=15%  Similarity=0.226  Sum_probs=30.6

Q ss_pred             ccccchhHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHhhhhCC-CCCCCHHHHHHhhcCccc
Q 044509           12 IDILSIPYALSSGGWLSLIILVLIAAT-ACFTALLLRQCMDKDP-DTITSYIDIVGHAFGHKD   72 (323)
Q Consensus        12 ~GiL~lP~af~~~G~~g~~~l~~~~~~-~~~t~~~L~~~~~~~~-~~~~~y~~l~~~~~G~~~   72 (323)
                      .++-.+| .+++.|+-.+...++.+++ ..-......|.....+ + .-...+=+++++|++.
T Consensus        20 ~~~~~~~-~~a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~-~GG~y~wv~~a~G~~~   80 (507)
T TIGR00910        20 LAVYEYP-TFATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWE-EGGIFAWVSNTLGERF   80 (507)
T ss_pred             HHHHhhH-HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC-CCCeeeehhhccCccH
Confidence            3666778 5778886544443333332 2224445556554432 2 1334444567778755

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	323
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.62
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.98
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	96.94
2jln_A	501	MHP1; hydantoin, transporter, membrane protein, nu	86.92

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.62  E-value=2.5e-06  Score=79.82  Aligned_cols=191  Identities=12%  Similarity=0.076  Sum_probs=107.9

Q ss_pred             cchhcccccccchhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccccccc--------
Q 044509            5 GFILTPGIDILSIPYALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDV--------   76 (323)
Q Consensus         5 l~~~~iG~GiL~lP~af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~--------   76 (323)
                      .+.+++|+|++.+|...++.|..+.+..++.+.........+.|...+.|+ .-...+..++.+||+...+.        
T Consensus        19 ~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~-~Gg~y~~~~~~~G~~~g~~~g~~~~~~~   97 (445)
T 3l1l_A           19 VSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPS-PGGSYAYARRCFGPFLGYQTNVLYWLAC   97 (445)
T ss_dssp             HHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-TTTHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred             HHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CCCchhhHHhHcCChHHHHHHHHHHHHH
Confidence            467889999999999888888657777778888888888888898888886 45788888999998752110        


Q ss_pred             --cccc-----cccccc---ccccc-chhHH-HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc--cccc
Q 044509           77 --PHFD-----LKLGKL---TIDGR-HAFVV-LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT--KGVG  142 (323)
Q Consensus        77 --~~~~-----~~~~~~---~~~~~-~~~~~-i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~--~~~~  142 (323)
                        ....     .+....   +.+.. ..+.. +..++..-..-.+..+....++.......+...+.++.....  ++..
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~~~  177 (445)
T 3l1l_A           98 WIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGET  177 (445)
T ss_dssp             HHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhh
Confidence              0000     000010   11111 11111 111112222233455555555544433333322222222211  1111


Q ss_pred             ccC---cccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509          143 FHG---KRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQ  196 (323)
Q Consensus       143 ~~~---~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~  196 (323)
                      ..+   +....++.++..++....|+|.+.                  |.+..+..++.++|+..........+.
T Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~  252 (445)
T 3l1l_A          178 YMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN  252 (445)
T ss_dssp             CCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCT
T ss_pred             cccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence            111   111123567888889999999886                  778888888899999888776666554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.98  E-value=0.00012  Score=68.27  Aligned_cols=190  Identities=13%  Similarity=0.059  Sum_probs=103.9

Q ss_pred             cchhcccccccchhH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCccc--cc-----cc
Q 044509            5 GFILTPGIDILSIPY-ALSSGGWLSLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKD--EK-----DV   76 (323)
Q Consensus         5 l~~~~iG~GiL~lP~-af~~~G~~g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~--~~-----l~   76 (323)
                      .+++++|+|++..|. +.++.|-.+.+..++.+.+.......+.|...+.|+ .-...+..++.+|++.  ..     .+
T Consensus        17 ~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P~-~Gg~y~~~~~~~G~~~~~g~~~~~~~~   95 (444)
T 3gia_A           17 AVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIVS-NAGPIAFIHKAIGDNIITGALSILLWM   95 (444)
T ss_dssp             HHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCCC-TTTHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCcHHHhHHHHhCcchHHHHHHHHHHH
Confidence            356789999999884 445556545666777888888888888999988886 4567788899999862  10     00


Q ss_pred             c---cccc------c-ccc-ccccccchhH-H--HHHHHHhhhcccccCCchhHHHHHHHHHHHHHhhhheeeccc--cc
Q 044509           77 P---HFDL------K-LGK-LTIDGRHAFV-V--LGGVMILPTMWLNDLGILSFVSAGGVLSSIIVTVCAFCVGAT--KG  140 (323)
Q Consensus        77 ~---~~~~------~-~~~-~~~~~~~~~~-~--i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~~~v~~~~~~--~~  140 (323)
                      .   ....      + +.. ........+. +  +...+..-..-.+..+.....+.......+...+.++.....  +.
T Consensus        96 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~  175 (444)
T 3gia_A           96 SYVISIALFAKGFAGYFLPLINAPINTFNIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHP  175 (444)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh
Confidence            0   0000      0 000 0011111221 1  111222222333455555555544433333322222222211  11


Q ss_pred             ccccCcccCCCCCChhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhcc
Q 044509          141 VGFHGKRRLFNLNGIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYG  195 (323)
Q Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG  195 (323)
                      .+.++.....++.++..++....++|.+.                  |.+..+..++.++|....+......+
T Consensus       176 ~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          176 SYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             GGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             hhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            11111111223345677788888999876                  77888888888999987766554443

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=96.94  E-value=0.14  Score=48.18  Aligned_cols=43  Identities=12%  Similarity=0.080  Sum_probs=32.5

Q ss_pred             Chhhhhhhheeeccch------------------hhhHHHHHHHHHHHHHHHhHHHhhccc
Q 044509          154 GIPTTLSLYTFCYGAH------------------HVLLLSFVICTITYLTMAVLGYLIYGQ  196 (323)
Q Consensus       154 ~~~~~~~~~~faf~~~------------------~~~~~~~~i~~~~y~~~g~~gy~~fG~  196 (323)
                      +...++....++|.+.                  |++..+..++.++|+...+.-....++
T Consensus       202 ~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~  262 (511)
T 4djk_A          202 GTLVVFVAFILSYMGVEASATHVNEMSNPGRDYPLAMLLLMVAAICLSSVGGLSIAMVIPG  262 (511)
T ss_dssp             TTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTTHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHeecCH
Confidence            3445667778888876                  788888889999999888766665554

>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A

Probab=86.92  E-value=20  Score=33.49  Aligned_cols=98  Identities=7%  Similarity=0.122  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhCCCCCCCHHHHHHhhcCcccccccccc---------ccc----------ccc-c-
Q 044509           28 SLIILVLIAATACFTALLLRQCMDKDPDTITSYIDIVGHAFGHKDEKDVPHF---------DLK----------LGK-L-   86 (323)
Q Consensus        28 g~~~l~~~~~~~~~t~~~L~~~~~~~~~~~~~y~~l~~~~~G~~~~~l~~~~---------~~~----------~~~-~-   86 (323)
                      +++..++-.++...-.-+......+.+   .++.++.+..||+++..+..-.         ..+          ..+ . 
T Consensus        61 a~lai~lG~li~~~~~~l~~~~G~~~G---l~~~v~~R~~FG~~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~  137 (501)
T 2jln_A           61 VIVAIAAGCTIAVILLFFTQSAAIRWG---INFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLT  137 (501)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHC---CCHHHHTTTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHhhcC---CChhhhhHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            554444444443333334444444554   5799999999999995421100         000          000 0 


Q ss_pred             cccccchhHHHHHHHHhhhcccccCCchhHHHHHHHHHHHHHh
Q 044509           87 TIDGRHAFVVLGGVMILPTMWLNDLGILSFVSAGGVLSSIIVT  129 (323)
Q Consensus        87 ~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~~~~~  129 (323)
                      ..+......++..++.++..+. .++.++++........+...
T Consensus       138 g~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~~~p~~~i~~  179 (501)
T 2jln_A          138 GFTNLPLWIVIFGAIQVVTTFY-GITFIRWMNVFASPVLLAMG  179 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHh-CHHHHHHHHHHHHHHHHHHH
Confidence            1111223455566677776644 66777666666544433333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00