Citrus Sinensis ID: 044515

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MSGLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Secondary Structure (PSIPRED)
cccccccccHHcccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEEcccccccccccHHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEcccccHcccccccHHEcccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccHHHcccccHHHccccccccccccccccccccccccccccccEEEHHHcccccEEEEEcccccccHHHHHHHHHHccccccccccEEEc
Coil and Loop (DISEMBL)
MSGLFPGLWVMVNQRRKINKQCrkvslcrrcesplmvtdrrqplVTRISDLDANALRARKRLEQKlgylqpysrsgvlpqnmrsgrnlkagmkctclgsklfgsrwplklrrcrsCRKICSVCLEGFQDKQQIAKLSCshkfhldcvlpwlaahphcpycrtpvlvs
Flexible Loop (DISEMBL)
MSGLFPGLWVMvnqrrkinkqcrkvslcrrcesplmvtdrrqplvtrisdldanALRARKRLEqklgylqpysrsgvlpqNMRSGRNLKAGMKCTCLgsklfgsrwplklRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Low Complexity Region (SEG)
MSGLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Disordered region (IsUnstruct)
***LFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARKRLEQKLGYLQPY**************NLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL**
Disordered Region (DISOPRED)
**GLFPGLWV*******************************************NALRARKRL*****************************************************CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV*
Disordered Region (DISEMBL)
MSGLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Disordered Region (DISPRO)
***LFPGLWVMVNQRRKINKQCRKVSLCRRCESPLM****RQPLVTRISDLDANALRARKRLEQKLG*********************************************CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9LX93	301	E3 ubiquitin-protein liga	no	no	0.281	0.156	0.5	6e-08
Q7T037	757	E3 ubiquitin-protein liga	N/A	no	0.299	0.066	0.42	8e-08
Q8LPN7	328	E3 ubiquitin-protein liga	no	no	0.287	0.146	0.437	9e-08
Q641J8	622	E3 ubiquitin-protein liga	N/A	no	0.299	0.080	0.42	9e-08
Q9Y6U7	377	RING finger protein 215 O	yes	no	0.347	0.153	0.441	1e-07
Q9Y252	685	E3 ubiquitin-protein liga	no	no	0.299	0.072	0.44	1e-07
Q5SPX3	379	RING finger protein 215 O	yes	no	0.347	0.153	0.441	2e-07
Q07G42	639	E3 ubiquitin-protein liga	yes	no	0.299	0.078	0.42	2e-07
Q68DV7	783	E3 ubiquitin-protein liga	no	no	0.329	0.070	0.428	2e-07
Q5NCP0	784	E3 ubiquitin-protein liga	no	no	0.335	0.071	0.421	3e-07

>sp|Q9LX93|ATL55_ARATH E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana GN=ATL55 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
           CSVCL  F++ + +  L  CSH FHL+C+  WL +H +CP CR PVL+
Sbjct: 135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLL 182

E3 ubiquitin-protein ligase that may be involved in positive regulation of programmed cell death (PCD) by facilitating degradation of negative regulators of PCD. May be involved in the early steps of the plant defense signaling pathway. Undergoes auto-ubiquitination.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q7T037|RF12B_XENLA E3 ubiquitin-protein ligase RNF12-B OS=Xenopus laevis GN=rnf12-b PE=2 SV=1

 Score = 56.2 bits (134), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           K CSVC+  + +  ++ KL CSH++H+ C+  WL+ +  CP CR  VLV+
Sbjct: 701 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVA 750

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 21/48 (43%), Positives = 30/48 (62%)

Query: 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
           +S    C+VC++ F+D   + ++ C H FH DC+LPWL  H  CP CR
Sbjct: 210 KSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCR 257

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q641J8|RF12A_XENLA E3 ubiquitin-protein ligase RNF12-A OS=Xenopus laevis GN=rnf12-a PE=1 SV=1

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           K CSVC+  + +  ++ KL CSH++H+ C+  WL+ +  CP CR  VLV+
Sbjct: 566 KTCSVCITEYTEGNKLRKLPCSHEYHIHCIDRWLSENSTCPICRRAVLVA 615

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9Y6U7|RN215_HUMAN RING finger protein 215 OS=Homo sapiens GN=RNF215 PE=2 SV=2

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 108 LKLRRCRSCR----------KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
           LK RRCR  R          + C+VCL+ F +KQ +  L C H+FH DCV PWL     C
Sbjct: 303 LKTRRCRLSRAAQGLPDPGAETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTC 362

Query: 158 PYCRTPVL 165
           P C+  VL
Sbjct: 363 PLCKFNVL 370

Homo sapiens (taxid: 9606)

>sp|Q9Y252|RNF6_HUMAN E3 ubiquitin-protein ligase RNF6 OS=Homo sapiens GN=RNF6 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/50 (44%), Positives = 32/50 (64%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           KICSVC+  +    ++ +L C H+FH+ C+  WL+ +  CP CR PVL S
Sbjct: 630 KICSVCISDYVTGNKLRQLPCMHEFHIHCIDRWLSENCTCPICRQPVLGS 679

E3 ubiquitin-protein ligase mediating 'Lys-48'-linked polyubiquitination of LIMK1 and its subsequent targeting to the proteasome for degradation. Negatively regulates axonal outgrowth through regulation of the LIMK1 turnover. Mediates 'Lys-6' and 'Lys-27'-linked polyubiquitination of AR/androgen receptor thereby modulating its transcriptional activity. May also bind DNA and function as a transcriptional regulator.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5SPX3|RN215_MOUSE RING finger protein 215 OS=Mus musculus GN=Rnf215 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 37/68 (54%), Gaps = 10/68 (14%)

Query: 108 LKLRRCRSCR----------KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHC 157
           LK RRCR  R          + C+VCL+ F +KQ +  L C H+FH DCV PWL     C
Sbjct: 305 LKTRRCRLSRAAHSLPEPGTETCAVCLDYFCNKQWLRVLPCKHEFHRDCVDPWLMLQQTC 364

Query: 158 PYCRTPVL 165
           P C+  VL
Sbjct: 365 PLCKFNVL 372

Mus musculus (taxid: 10090)

>sp|Q07G42|RNF12_XENTR E3 ubiquitin-protein ligase RNF12 OS=Xenopus tropicalis GN=rnf12 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 33/50 (66%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           K CSVC+  + +  ++ KL CSH++H+ C+  WL+ +  CP CR  VLV+
Sbjct: 583 KTCSVCITEYTEGNKLRKLPCSHEYHVHCIDRWLSENSTCPICRRAVLVA 632

Acts as a E3 ubiquitin-protein ligase specific for ldb1, mediating ubiquitination and proteasome-dependent degradation of excess ldb1 in a RING-dependent manner. Does not degrade ldb1 bound to lhx1/lim1, nor lim1 itself and thus contributes to the establishment of proper ldb1-lhx1/lim1 stoichiometry and the formation of a ldb1-lhx1/lim1 complex. Interferes with Spemann organizer function and suppresses secondary axis formation induced by ldb1 and lhx1/lim1.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q68DV7|RNF43_HUMAN E3 ubiquitin-protein ligase RNF43 OS=Homo sapiens GN=RNF43 PE=1 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%)

Query: 105 RWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYC 160
            WP     C S   +C++CLE F + Q++  +SC H+FH +CV PWL  H  CP C
Sbjct: 258 EWPDSGSSCSSA-PVCAICLEEFSEGQELRVISCLHEFHRNCVDPWLHQHRTCPLC 312

Probable E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Homo sapiens (taxid: 9606)

>sp|Q5NCP0|RNF43_MOUSE E3 ubiquitin-protein ligase RNF43 OS=Mus musculus GN=Rnf43 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 1/57 (1%)

Query: 104 SRWPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYC 160
           + WP     C S   +C++CLE F + Q++  +SC H+FH  CV PWL  H  CP C
Sbjct: 257 AEWPDSGSSCSST-PVCAICLEEFSEGQELRVISCLHEFHRTCVDPWLYQHRTCPLC 312

Probable E3 ubiquitin-protein ligase. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfer the ubiquitin to targeted substrates.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
351727246	166	uncharacterized protein LOC100527548 [Gl	0.970	0.975	0.391	2e-24
388500134	152	unknown [Lotus japonicus]	0.682	0.75	0.478	3e-22
225432770	164	PREDICTED: RING finger protein 126 [Viti	0.946	0.963	0.407	1e-21
356535980	173	PREDICTED: RING finger protein 43-like [	0.994	0.959	0.372	2e-21
255638348	173	unknown [Glycine max]	0.994	0.959	0.366	4e-21
217069846	161	unknown [Medicago truncatula] gi|2170723	0.952	0.987	0.359	7e-21
147775249	164	hypothetical protein VITISV_025062 [Viti	0.946	0.963	0.401	7e-21
403371961	559	putative zinc finger protein [Oxytricha	0.269	0.080	0.533	3e-09
403348913	559	putative zinc finger protein [Oxytricha	0.269	0.080	0.533	3e-09
225463022	193	PREDICTED: E3 ubiquitin-protein ligase a	0.694	0.601	0.330	1e-08

>gi|351727246|ref|NP_001237666.1| uncharacterized protein LOC100527548 [Glycine max] gi|255632588|gb|ACU16644.1| unknown [Glycine max]

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 94/166 (56%), Gaps = 4/166 (2%)

Query: 1   MSGLFPGLWVMVNQRRKINK--QCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRA 58
           M+G  PG+ ++  +R + N   + +  + CR  +S  +     +P    ++ LD  AL+A
Sbjct: 1   MAGRLPGVGLLARKRTEQNHRYEHQHHATCR--QSYHLGESSLEPPWIPLTVLDETALKA 58

Query: 59  RKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRK 118
           R+RL +KLG+     RS   P+            K   +G KL  S W L+  + +  RK
Sbjct: 59  RQRLHKKLGHFFSSYRSSENPRKEGKVNQSSYEKKDGGIGRKLLESSWLLRGNKFKKDRK 118

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           +C+VCLE    +QQ+  LSCSHK+H  C+LPWLAAHPHCPYCRTPV
Sbjct: 119 VCAVCLEDLGQEQQVMNLSCSHKYHSACLLPWLAAHPHCPYCRTPV 164

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388500134|gb|AFK38133.1| unknown [Lotus japonicus]

 Score =  110 bits (274), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 57/119 (47%), Positives = 75/119 (63%), Gaps = 5/119 (4%)

Query: 46  TRISDLDANALRARKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSR 105
           + ++ LD  A++AR+RL++KLG+     RS   P    S +   AG     LG KL  S 
Sbjct: 38  SSVTALDETAIQARQRLQKKLGHFFSSFRSDDNPNKEVSLQKKDAG-----LGRKLLESS 92

Query: 106 WPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           W L+  + +  RK+C+VCLE FQ KQQ+  LSCSHK+H  C+LPWL AHPHCP CRT V
Sbjct: 93  WLLRGTKFKKERKVCAVCLEDFQQKQQVMNLSCSHKYHSACLLPWLEAHPHCPCCRTSV 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432770|ref|XP_002283255.1| PREDICTED: RING finger protein 126 [Vitis vinifera]

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 68/167 (40%), Positives = 95/167 (56%), Gaps = 9/167 (5%)

Query: 1   MSGLFPGLWVMVNQRRKINKQCRKVS-LCRRCESPLMVTDRRQPLVTRISDLDANALRAR 59
           M+G  PG  V V  RR  + + R+   L  R   PL    +    VT    +   AL AR
Sbjct: 1   MAGTLPG--VGVGSRRMSHHRHRQDDPLVFREPPPLRERLQHSTTVT----MGETALMAR 54

Query: 60  KRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMK-CTCLGSKLFGSRWPLKLRR-CRSCR 117
           +RL++KL + +  SRS     N     N K   K  + +GSK+ G  W L+L    +S  
Sbjct: 55  QRLDRKLAHYRASSRSSKQGANGSRESNHKERTKRNSSIGSKILGRPWKLQLNTGSKSNG 114

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           ++CSVCLE F+ +QQ+ +LSCSHK+H +C++PWLA+HPHCP CR PV
Sbjct: 115 EMCSVCLEDFEGEQQMMELSCSHKYHSNCLMPWLASHPHCPTCRNPV 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535980|ref|XP_003536519.1| PREDICTED: RING finger protein 43-like [Glycine max]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 91/169 (53%), Gaps = 3/169 (1%)

Query: 1   MSGLFPGLWVMVNQRRKINKQCRKVSL--CRRCESPLMVTDRRQPLVTRISDLDANALRA 58
           M+G  PG+ ++  +R + N +     L  CR    P   +    P +  ++ LD  AL+A
Sbjct: 1   MAGRLPGVGLLARKRTEKNYRYEHQYLPTCRHSYYPRESSSFDPPWIP-LTVLDETALKA 59

Query: 59  RKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRK 118
           R+RL +KL +     RS   P+        +   K   +G KL    W L+  + +  RK
Sbjct: 60  RQRLHKKLEHFFSSYRSSENPRKEGKVSQNRYEKKDGGIGRKLLECSWLLRGNKLKKDRK 119

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           +C+VCLE    +QQ+  LSCSHK+H  C+L WLA+HPHCPYCRTPV  S
Sbjct: 120 VCAVCLEDLGLEQQVMNLSCSHKYHSACLLRWLASHPHCPYCRTPVQPS 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638348|gb|ACU19486.1| unknown [Glycine max]

 Score =  106 bits (264), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 90/169 (53%), Gaps = 3/169 (1%)

Query: 1   MSGLFPGLWVMVNQRRKINKQCRKVSL--CRRCESPLMVTDRRQPLVTRISDLDANALRA 58
           M+G  PG+ ++  +R + N +     L  CR    P   +    P +  ++ LD  AL+A
Sbjct: 1   MAGRLPGVGLLARKRTEKNYRYEHQYLPTCRHSYYPRESSSFDPPWIP-LTVLDETALKA 59

Query: 59  RKRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRK 118
           R+RL +KL +     RS   P+        +   K   +G KL    W L+  + +  RK
Sbjct: 60  RQRLHKKLEHFFSSYRSSENPRKEGKVSQNRYEKKDGGIGRKLLECSWLLRGNKLKKDRK 119

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           +C+VCLE    +QQ+  LSCSHK+H  C+  WLA+HPHCPYCRTPV  S
Sbjct: 120 VCAVCLEDLGLEQQVMNLSCSHKYHSACLFRWLASHPHCPYCRTPVQPS 168

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217069846|gb|ACJ83283.1| unknown [Medicago truncatula] gi|217072378|gb|ACJ84549.1| unknown [Medicago truncatula] gi|388521239|gb|AFK48681.1| unknown [Medicago truncatula]

 Score =  105 bits (262), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 59/164 (35%), Positives = 86/164 (52%), Gaps = 5/164 (3%)

Query: 1   MSGLFPGLWVMVNQRRKINKQCRKVSLCRRCESPLMVTDRRQPLVTRISDLDANALRARK 60
           M+G  PG  V ++ R++      +           +      P  +  + LD  A +A++
Sbjct: 1   MAGRLPG--VGLSPRKRSEHYHNRHEHYATYRDSYLKESLDAPWTSMTTTLDETAFKAKQ 58

Query: 61  RLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMKCTCLGSKLFGSRWPLKLRRCRSCRKIC 120
           RL++KLG+    SRS       + G+  +   K   LG KL  S W L+  + +  RKIC
Sbjct: 59  RLQKKLGHFFSSSRSSE-HNPKKEGKEFQK--KDAGLGRKLLESSWLLRGNKFKKERKIC 115

Query: 121 SVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           +VCLE F   +++  LSCSHK+H  C+LPWL  HPHCPYCRT V
Sbjct: 116 AVCLEDFLQDEEVMNLSCSHKYHSACLLPWLETHPHCPYCRTIV 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147775249|emb|CAN74781.1| hypothetical protein VITISV_025062 [Vitis vinifera]

 Score =  105 bits (261), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 67/167 (40%), Positives = 93/167 (55%), Gaps = 9/167 (5%)

Query: 1   MSGLFPGLWVMVNQRRKINKQCRKVS-LCRRCESPLMVTDRRQPLVTRISDLDANALRAR 59
           M+G  PG  V V  RR  + + R+   L  R   PL    +    VT    +   AL AR
Sbjct: 1   MAGTLPG--VGVGSRRMSHHRHRQDDPLVFREPPPLRERLQHSTTVT----MGETALMAR 54

Query: 60  KRLEQKLGYLQPYSRSGVLPQNMRSGRNLKAGMK-CTCLGSKLFGSRWPLKLRR-CRSCR 117
           +RL++KL + +  SRS     N     N K   K  +  GS + G  W L+L    +S  
Sbjct: 55  QRLDRKLAHYRASSRSSKQGANGSRESNHKERTKRNSSTGSXILGRPWKLQLNTGSKSNG 114

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           ++CSVCLE F+ +QQ+ +LSCSHK+H +C++PWLA+HPHCP CR PV
Sbjct: 115 EMCSVCLEDFEGEQQMMELSCSHKYHSNCLMPWLASHPHCPTCRNPV 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|403371961|gb|EJY85865.1| putative zinc finger protein [Oxytricha trifallax]

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
           +K C VC E F+D+ +  KL C H FH+DC+LPWL  H  CP CR
Sbjct: 453 KKECQVCFEQFKDEDKFYKLPCKHLFHVDCILPWLDKHNTCPSCR 497

Source: Oxytricha trifallax

Species: Oxytricha trifallax

Genus: Oxytricha

Family: Oxytrichidae

Order: Sporadotrichida

Class: Spirotrichea

Superkingdom: Eukaryota

>gi|403348913|gb|EJY73902.1| putative zinc finger protein [Oxytricha trifallax]

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 24/45 (53%), Positives = 30/45 (66%)

Query: 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
           +K C VC E F+D+ +  KL C H FH+DC+LPWL  H  CP CR
Sbjct: 453 KKECQVCFEQFKDEDKFYKLPCKHLFHVDCILPWLDKHNTCPSCR 497

Source: Oxytricha trifallax

Species: Oxytricha trifallax

Genus: Oxytricha

Family: Oxytrichidae

Order: Sporadotrichida

Class: Spirotrichea

Superkingdom: Eukaryota

>gi|225463022|ref|XP_002266038.1| PREDICTED: E3 ubiquitin-protein ligase arkadia-like isoform 1 [Vitis vinifera]

 Score = 64.7 bits (156), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/124 (33%), Positives = 64/124 (51%), Gaps = 8/124 (6%)

Query: 51  LDANALRARKRLEQKLGYL---QPYSRSGVLPQNMRSGRNLKAG-MKCTCLGSKLFGSR- 105
           L   A  A++RL+++L      +P          +  GR +  G ++    GSK  GS+ 
Sbjct: 71  LGGVAREAKERLDERLRTQRKSEPTRNKSKESLRIVDGRAMVVGELQTEVFGSKRSGSKR 130

Query: 106 --WPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTP 163
             W  KL    S +  C++CLEGF+  + +  L C+H+FH  C++PWL  + HCP CR  
Sbjct: 131 FSWG-KLSWKASDQVECAICLEGFKAGESLVHLPCAHRFHSRCLMPWLETNAHCPCCRMG 189

Query: 164 VLVS 167
           + VS
Sbjct: 190 IFVS 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2053583	196	AT2G15580 [Arabidopsis thalian	0.658	0.561	0.35	2.4e-12
TAIR|locus:2161058	396	ATCRT1 [Arabidopsis thaliana (	0.251	0.106	0.476	1.6e-10
TAIR|locus:2131463	356	AT4G26400 [Arabidopsis thalian	0.251	0.117	0.452	1.7e-10
MGI|MGI:1921382	667	Rnf6 "ring finger protein (C3H	0.287	0.071	0.416	4.3e-10
TAIR|locus:2142449	301	RING1 [Arabidopsis thaliana (t	0.281	0.156	0.5	5.9e-10
UNIPROTKB|F6RQU6	293	RNF115 "Uncharacterized protei	0.251	0.143	0.428	9.5e-10
UNIPROTKB|F1ND85	233	RNF215 "Uncharacterized protei	0.353	0.253	0.433	1e-09
TAIR|locus:2040736	235	AT2G37580 [Arabidopsis thalian	0.281	0.2	0.520	1.1e-09
TAIR|locus:2092895	315	AT3G13430 [Arabidopsis thalian	0.251	0.133	0.523	1.1e-09
UNIPROTKB|I3LDQ5	293	LOC100739432 "Uncharacterized	0.251	0.143	0.428	1.2e-09

TAIR|locus:2053583 AT2G15580 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/120 (35%), Positives = 66/120 (55%)

Query:    51 LDANALRARKRLEQKLGYLQPYSR-SGVLPQN-MRSGRNLKAG-MKCTCLGSKLFGSR-- 105
             LD  A  A++RL ++L  + P +R +G    N +  G+    G +    +G K    R  
Sbjct:    79 LDGAAKEAKQRLNKRLR-IPPRTRQNGKDKGNKLEQGKGKPLGDLPTEVVGLKKSRGRLM 137

Query:   106 -WPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
              W  K RR R  ++ C++CL+ F+  + +  L C+HKFH  C+LPWL  + +CPYCRT +
Sbjct:   138 EW-FK-RRVRE-QQDCAICLDRFKKGETLVHLPCAHKFHSICLLPWLDTNVYCPYCRTDI 194

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2161058 ATCRT1 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
 Identities = 20/42 (47%), Positives = 28/42 (66%)

Query:   120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
             CSVCL+ F+   +  ++ C HKFH+ C++PWL  H  CP CR
Sbjct:   259 CSVCLDDFEKGTEAKEMPCKHKFHVRCIVPWLELHSSCPVCR 300

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2131463 AT4G26400 [Arabidopsis thaliana (taxid:3702)]

 Score = 139 (54.0 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
 Identities = 19/42 (45%), Positives = 27/42 (64%)

Query:   120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
             CS+CL+ F    +  ++ C HKFH+ C++PWL  H  CP CR
Sbjct:   241 CSICLDDFDKGSEAKEMPCKHKFHIRCIVPWLELHSSCPVCR 282

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

MGI|MGI:1921382 Rnf6 "ring finger protein (C3H2C3 type) 6" [Mus musculus (taxid:10090)]

 Score = 129 (50.5 bits), Expect = 4.3e-10, Sum P(2) = 4.3e-10
 Identities = 20/48 (41%), Positives = 31/48 (64%)

Query:   118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
             K+CSVC+  +    ++ +L C H+FH+ C+  WL+ +  CP CR PVL
Sbjct:   612 KVCSVCISDYVAGNKLRQLPCLHEFHIHCIDRWLSENCTCPVCRRPVL 659

GO:0003677 "DNA binding" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0016874 "ligase activity" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030517 "negative regulation of axon extension" evidence=IGI;IMP

GO:0042995 "cell projection" evidence=IEA

GO:0044314 "protein K27-linked ubiquitination" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050681 "androgen receptor binding" evidence=ISO

GO:0060765 "regulation of androgen receptor signaling pathway" evidence=ISO

GO:0070936 "protein K48-linked ubiquitination" evidence=IMP

GO:0085020 "protein K6-linked ubiquitination" evidence=ISO

TAIR|locus:2142449 RING1 [Arabidopsis thaliana (taxid:3702)]

 Score = 147 (56.8 bits), Expect = 5.9e-10, P = 5.9e-10
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query:   120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
             CSVCL  F++ + +  L  CSH FHL+C+  WL +H +CP CR PVL+
Sbjct:   135 CSVCLNEFEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLL 182

GO:0005576 "extracellular region" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP

GO:0002238 "response to molecule of fungal origin" evidence=IEP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP;RCA

GO:0012501 "programmed cell death" evidence=IC

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0043068 "positive regulation of programmed cell death" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

UNIPROTKB|F6RQU6 RNF115 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 128 (50.1 bits), Expect = 9.5e-10, Sum P(2) = 9.5e-10
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query:   120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
             C VC E +  ++++ +L C+H FH  C++PWL  H  CP CR
Sbjct:   217 CPVCKEDYTVEEEVRQLPCNHYFHSSCIVPWLELHDACPVCR 258

GO:0051865 "protein autoubiquitination" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1ND85 RNF215 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 141 (54.7 bits), Expect = 1.0e-09, P = 1.0e-09
 Identities = 26/60 (43%), Positives = 34/60 (56%)

Query:   107 PLKLRRCRSCR-KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
             P +  R R+C    C+VCL+ F   Q +  L CSH+FH DCV PWL     CP C+  +L
Sbjct:   167 PGRALRSRACEIDSCAVCLDQFSKSQWLRVLPCSHEFHRDCVDPWLLLQQTCPLCKHNIL 226

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2040736 AT2G37580 [Arabidopsis thaliana (taxid:3702)]

 Score = 141 (54.7 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/48 (52%), Positives = 31/48 (64%)

Query:   120 CSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
             CSVCL  F D  ++ +LS C H FH+ C+  WL  HP+CP CRT V V
Sbjct:   142 CSVCLMVFTDSDELRQLSECKHAFHVLCIETWLKDHPNCPICRTDVSV 189

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS

TAIR|locus:2092895 AT3G13430 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 22/42 (52%), Positives = 28/42 (66%)

Query:   120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
             CSVCL+ F+   +  ++ C HKFH DC+LPWL  H  CP CR
Sbjct:   225 CSVCLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCR 266

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

UNIPROTKB|I3LDQ5 LOC100739432 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 127 (49.8 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 18/42 (42%), Positives = 27/42 (64%)

Query:   120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
             C VC E +  ++++ +L C+H FH  C++PWL  H  CP CR
Sbjct:   217 CPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDACPVCR 258

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	5e-11
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	7e-09
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	1e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	3e-05
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	7e-05
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	6e-04
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	0.002

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 54.3 bits (131), Expect = 5e-11
 Identities = 17/44 (38%), Positives = 26/44 (59%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTP 163
           C +CL+ F+  +++  L C H FH +C+  WL +   CP CR P
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 53.5 bits (128), Expect = 7e-09
 Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPH-CPYCRTPV 164
           C++C+  F    ++  L C H+FH+ CV  WL  + + CP CRT +
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL-AAHPHCPYCRTPV 164
           C +CLE F++   +  L C H F   C+  WL +    CP CRTP+
Sbjct: 2   CPICLEEFREPVVL--LPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 43.0 bits (101), Expect = 3e-05
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 118 KICSVCLEGF--QDKQQIA--------KLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
           + C++C++     D + +         +L C H  HL C+  WL     CP CR PV+
Sbjct: 288 RTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI 345

Length = 491

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 38.9 bits (91), Expect = 7e-05
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 104 SRWPLKLRRCRSCRK-ICSVCLEGFQDKQQ--IAKLSCSHKFHLDCVLPWLAAHPHCPYC 160
             W ++   C  CR      C E         +    C H FHL C+  WL     CP C
Sbjct: 13  WSWDIEDDVCAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLC 72

Query: 161 R 161
           R
Sbjct: 73  R 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 38.6 bits (90), Expect = 6e-04
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 114 RSCRKICSVCLEGFQDKQQIAKL-----SCSHKFHLDCVLPWLAAHPHCPYCRTP 163
           RS  K C++C+E   DK+          +C+H F ++C+  W      CP CRTP
Sbjct: 171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT 162
              C +CL+  +D   +    C H F  +C+L +L     CP CRT
Sbjct: 2   ELECPICLDLLRDP--VVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.55
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.47
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.32
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.26
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.23
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	99.21
PHA02929	238	N1R/p28-like protein; Provisional	99.19
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.07
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.06
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	99.03
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.0
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	99.0
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.99
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.97
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.89
PHA02926	242	zinc finger-like protein; Provisional	98.87
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.85
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.82
PF14634	44	zf-RING_5: zinc-RING finger domain	98.79
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.77
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.74
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.71
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.66
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.64
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.62
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.6
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.49
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.39
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.36
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.36
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.34
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	98.32
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	98.29
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.29
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.26
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.25
COG5219	1525	Uncharacterized conserved protein, contains RING Z	98.21
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	98.11
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	98.04
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.84
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.81
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.73
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.59
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.52
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.5
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.45
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.4
KOG2660	331	consensus Locus-specific chromosome binding protei	97.4
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.36
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.29
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.21
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.17
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	97.15
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	97.15
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.87
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	96.79
COG5152	259	Uncharacterized conserved protein, contains RING a	96.76
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	96.69
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	96.37
KOG1002	791	consensus Nucleotide excision repair protein RAD16	96.37
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	96.37
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	96.26
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	96.22
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	96.2
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.17
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.95
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.94
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	95.9
PHA03096	284	p28-like protein; Provisional	95.88
PHA02862	156	5L protein; Provisional	95.77
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	95.57
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.42
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	95.25
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	95.16
COG5236	493	Uncharacterized conserved protein, contains RING Z	95.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.04
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	94.83
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.8
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.75
KOG1940	276	consensus Zn-finger protein [General function pred	94.74
COG5222	427	Uncharacterized conserved protein, contains RING Z	94.62
PF04641	260	Rtf2: Rtf2 RING-finger	94.47
KOG3002	299	consensus Zn finger protein [General function pred	94.36
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	93.54
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	93.05
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	93.0
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.89
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.33
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	91.89
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	91.16
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	90.34
KOG0298	1394	consensus DEAD box-containing helicase-like transc	89.44
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.42
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	89.17
KOG3053	293	consensus Uncharacterized conserved protein [Funct	88.83
KOG1812	384	consensus Predicted E3 ubiquitin ligase [Posttrans	88.64
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	88.41
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	87.93
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	87.55
KOG1609	323	consensus Protein involved in mRNA turnover and st	86.81
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	86.74
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	85.5
KOG4718	235	consensus Non-SMC (structural maintenance of chrom	85.41
KOG3899	381	consensus Uncharacterized conserved protein [Funct	84.66
KOG0825	1134	consensus PHD Zn-finger protein [General function	83.59
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	82.17
KOG3579	352	consensus Predicted E3 ubiquitin ligase [Posttrans	80.93

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.55  E-value=1.8e-15  Score=92.45  Aligned_cols=44  Identities=43%  Similarity=1.123  Sum_probs=40.2

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR  161 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR  161 (167)
                      ++|+||++.|..++.++.++|+|.||.+||..|++.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999888899999999999999999999999999997

...

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.47  E-value=4.6e-14  Score=119.87  Aligned_cols=49  Identities=37%  Similarity=1.057  Sum_probs=45.1

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCccC
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVLV  166 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~~  166 (167)
                      ..|+||+|+|..+++++.|||+|.||..||.+|+.+.. .||+|+..+..
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            58999999999999999999999999999999998775 59999998753

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.32  E-value=1.1e-12  Score=88.60  Aligned_cols=46  Identities=35%  Similarity=0.891  Sum_probs=36.4

Q ss_pred             cccccceeccccccC----------CceEEecCCCcccHHhHHHHHhcCCCCCCcc
Q 044515          116 CRKICSVCLEGFQDK----------QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR  161 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~----------~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR  161 (167)
                      .++.|+||++.|.+.          -.+...+|+|.||..||.+|+..+.+||+||
T Consensus        18 ~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   18 ADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             cCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            355699999999432          2344457999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.26  E-value=3.2e-12  Score=106.22  Aligned_cols=51  Identities=33%  Similarity=0.864  Sum_probs=47.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~~  166 (167)
                      ..-+|+|||+.|...+++..+||.|.||..|+.+|+. -+..||+||.+++|
T Consensus       322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            4578999999999999999999999999999999997 57799999999986

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=5e-12  Score=107.55  Aligned_cols=52  Identities=31%  Similarity=0.933  Sum_probs=44.1

Q ss_pred             cccccccceecccc-ccC---------CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGF-QDK---------QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~-~~~---------~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..++..|.||++++ ..+         .+...|||||+||.+|++.|++.+++||+||.++.
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~i  345 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVI  345 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCccc
Confidence            45678999999994 433         14578999999999999999999999999999854

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=8.7e-12  Score=102.91  Aligned_cols=59  Identities=29%  Similarity=0.658  Sum_probs=49.7

Q ss_pred             CccccccccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccCC
Q 044515          106 WPLKLRRCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS  167 (167)
Q Consensus       106 ~~~~~~~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~s  167 (167)
                      |.............|.||++...++   ..+||||+||++||..|......||+||.++.|+
T Consensus       228 ~s~~~~~i~~a~~kC~LCLe~~~~p---SaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~ps  286 (293)
T KOG0317|consen  228 DSNSLSSIPEATRKCSLCLENRSNP---SATPCGHIFCWSCILEWCSEKAECPLCREKFQPS  286 (293)
T ss_pred             hccCCccCCCCCCceEEEecCCCCC---CcCcCcchHHHHHHHHHHccccCCCcccccCCCc
Confidence            4434444556678999999998877   7789999999999999999999999999998764

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.19  E-value=1.4e-11  Score=100.32  Aligned_cols=51  Identities=35%  Similarity=0.809  Sum_probs=41.7

Q ss_pred             ccccccceeccccccCCc-----eEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQ-----IAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~-----~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..+.+|+||++.+..+..     .+..+|+|.||..||..|+..+.+||+||.++.
T Consensus       172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~  227 (238)
T PHA02929        172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence            346789999999875431     233469999999999999999999999998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.07  E-value=7.4e-11  Score=73.80  Aligned_cols=46  Identities=33%  Similarity=0.821  Sum_probs=39.2

Q ss_pred             ccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      +..|.||++...+   .+.+||+|. ||..|+..|+.....||+||.+|.
T Consensus         2 ~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPRD---VVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBSS---EEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCCc---eEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            5689999998655   488899999 999999999999999999999874

...

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.06  E-value=1.2e-10  Score=91.82  Aligned_cols=50  Identities=30%  Similarity=0.718  Sum_probs=41.6

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhc----------------CCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA----------------HPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~----------------~~~CP~CR~~v~  165 (167)
                      ...++..|+||++.+.++   +.++|+|.||..||..|+..                ...||+||..|.
T Consensus        14 ~~~~~~~CpICld~~~dP---VvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is   79 (193)
T PLN03208         14 DSGGDFDCNICLDQVRDP---VVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVS   79 (193)
T ss_pred             cCCCccCCccCCCcCCCc---EEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCC
Confidence            334567899999998877   77889999999999999852                247999999875

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=99.03  E-value=2.1e-10  Score=79.28  Aligned_cols=52  Identities=33%  Similarity=0.876  Sum_probs=40.4

Q ss_pred             cccccccceecccccc--------CC--ceEEecCCCcccHHhHHHHHhc---CCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQD--------KQ--QIAKLSCSHKFHLDCVLPWLAA---HPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~--------~~--~~~~lpC~H~Fh~~Ci~~Wl~~---~~~CP~CR~~v~  165 (167)
                      ..+++.|.||+..|..        ++  .++.-.|+|.||.+||.+|+.+   +..||+||++..
T Consensus        18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            3458899999999973        11  2333359999999999999975   468999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.00  E-value=2.2e-10  Score=69.43  Aligned_cols=38  Identities=34%  Similarity=0.864  Sum_probs=30.4

Q ss_pred             cceeccccccCCceEEecCCCcccHHhHHHHHhcC----CCCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH----PHCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~----~~CP~C  160 (167)
                      |+||++.|.++   +.|+|||+|+..||..|+...    ..||.|
T Consensus         1 CpiC~~~~~~P---v~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDP---VSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSE---EE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCc---cccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            89999999999   999999999999999999754    369987

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=99.00  E-value=3.9e-10  Score=67.22  Aligned_cols=44  Identities=41%  Similarity=1.087  Sum_probs=35.8

Q ss_pred             ccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCc
Q 044515          119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPV  164 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v  164 (167)
                      .|+||++.+...  ....+|+|.||..|+..|+.. ...||+|+..+
T Consensus         1 ~C~iC~~~~~~~--~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREP--VVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCc--eEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998433  344459999999999999987 67899998764

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.99  E-value=2.7e-10  Score=67.72  Aligned_cols=39  Identities=33%  Similarity=1.048  Sum_probs=32.9

Q ss_pred             cceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~C  160 (167)
                      |+||++.+.++  ++.++|||.||..||..|++.+..||+|
T Consensus         1 C~iC~~~~~~~--~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDP--VVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSE--EEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCc--CEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            89999998764  3567899999999999999998899998

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=3.6e-10  Score=90.87  Aligned_cols=49  Identities=29%  Similarity=0.689  Sum_probs=41.7

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~v~  165 (167)
                      .....+|.||++.-.++   ++..|||.||+.||.+|+..+   +.||+|+..|.
T Consensus        44 ~~~~FdCNICLd~akdP---VvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs   95 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDP---VVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVS   95 (230)
T ss_pred             CCCceeeeeeccccCCC---EEeecccceehHHHHHHHhhcCCCeeCCccccccc
Confidence            45577899999997777   777899999999999999753   47999998774

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=6.7e-10  Score=100.12  Aligned_cols=53  Identities=30%  Similarity=0.807  Sum_probs=45.1

Q ss_pred             ccccccccceeccccccCCc--eEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQ--IAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~--~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ....+..|+||++.+..+..  ...++|+|+||..|+..|++.+++||+||..+.
T Consensus       287 ~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  287 LALSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hhhcCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence            33457899999999987543  478999999999999999999999999998543

>PHA02926 zinc finger-like protein; Provisional

Probab=98.87  E-value=1.2e-09  Score=87.67  Aligned_cols=51  Identities=35%  Similarity=0.757  Sum_probs=38.3

Q ss_pred             ccccccceeccccccC-----CceEEe-cCCCcccHHhHHHHHhcC------CCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDK-----QQIAKL-SCSHKFHLDCVLPWLAAH------PHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~-----~~~~~l-pC~H~Fh~~Ci~~Wl~~~------~~CP~CR~~v~  165 (167)
                      +.+.+|+||++....+     .....| +|+|.||..||..|....      .+||+||..+.
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            4568899999986432     122345 599999999999998753      36999998653

>smart00504 Ubox Modified RING finger domain

Probab=98.85  E-value=3e-09  Score=68.90  Aligned_cols=45  Identities=22%  Similarity=0.487  Sum_probs=41.0

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..|+||.+.+.++   +.++|||+|+..||..|+..+.+||+|+.++.
T Consensus         2 ~~Cpi~~~~~~~P---v~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~   46 (63)
T smart00504        2 FLCPISLEVMKDP---VILPSGQTYERRAIEKWLLSHGTDPVTGQPLT   46 (63)
T ss_pred             cCCcCCCCcCCCC---EECCCCCEEeHHHHHHHHHHCCCCCCCcCCCC
Confidence            4699999999987   78899999999999999988889999998774

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.82  E-value=2.3e-09  Score=63.99  Aligned_cols=39  Identities=44%  Similarity=1.109  Sum_probs=33.6

Q ss_pred             cceeccccccCCceEEecCCCcccHHhHHHHHh--cCCCCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA--AHPHCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~--~~~~CP~C  160 (167)
                      |+||++.+..+.  ..++|+|.||..||..|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~--~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPV--ILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEE--EETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCC--EEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999988772  3788999999999999998  45589988

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.79  E-value=4.8e-09  Score=63.96  Aligned_cols=44  Identities=27%  Similarity=0.739  Sum_probs=37.5

Q ss_pred             ccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCccc
Q 044515          119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT  162 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~  162 (167)
                      .|.||++.|........++|+|+||..|+..+......||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            48999999955556778889999999999998856679999984

>smart00184 RING Ring finger

Probab=98.77  E-value=6.9e-09  Score=59.63  Aligned_cols=38  Identities=37%  Similarity=1.051  Sum_probs=32.2

Q ss_pred             cceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~C  160 (167)
                      |+||++...   ....++|+|.||..|+..|+. ....||+|
T Consensus         1 C~iC~~~~~---~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELK---DPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCC---CcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            789998843   347889999999999999998 56689987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=5.3e-09  Score=81.21  Aligned_cols=49  Identities=27%  Similarity=0.660  Sum_probs=41.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ....|+|||+.+..... +-..|||+||..||+.-+.....||+|+..|.
T Consensus       130 ~~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt  178 (187)
T KOG0320|consen  130 GTYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKIT  178 (187)
T ss_pred             cccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccc
Confidence            45789999999876521 33569999999999999999999999997664

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.71  E-value=8.2e-09  Score=89.69  Aligned_cols=49  Identities=31%  Similarity=0.631  Sum_probs=43.2

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ......|+||.+.|..+   +.++|+|.||..||..|+.....||+|+..+.
T Consensus        23 Le~~l~C~IC~d~~~~P---vitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~   71 (397)
T TIGR00599        23 LDTSLRCHICKDFFDVP---VLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQ   71 (397)
T ss_pred             cccccCCCcCchhhhCc---cCCCCCCchhHHHHHHHHhCCCCCCCCCCccc
Confidence            34567899999999877   67899999999999999988889999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.66  E-value=5.7e-09  Score=85.80  Aligned_cols=50  Identities=34%  Similarity=0.784  Sum_probs=42.1

Q ss_pred             cccccceeccccccCC-------ceEEecCCCcccHHhHHHHH--hcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQ-------QIAKLSCSHKFHLDCVLPWL--AAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~-------~~~~lpC~H~Fh~~Ci~~Wl--~~~~~CP~CR~~v~  165 (167)
                      ++..|+||-..+....       ++.+|.|+|+||..||.-|.  ...++||+|+..|+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVd  281 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVD  281 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhh
Confidence            4668999998887554       56789999999999999996  46779999998876

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.64  E-value=1.9e-08  Score=82.45  Aligned_cols=49  Identities=33%  Similarity=0.695  Sum_probs=42.2

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHH-HHhcCCC-CCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLP-WLAAHPH-CPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~-Wl~~~~~-CP~CR~~v~~  166 (167)
                      ..+..|+||++....+   ..++|||+||..||.. |-..+.. ||+||+.+.+
T Consensus       213 ~~d~kC~lC~e~~~~p---s~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVP---SCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCc---ccccccchhhHHHHHHHHHhhccccCchhhhhccc
Confidence            4578899999997777   7889999999999999 8766654 9999998865

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.62  E-value=2.9e-08  Score=67.55  Aligned_cols=49  Identities=24%  Similarity=0.676  Sum_probs=38.5

Q ss_pred             ccccceecccccc-----------CCce-EEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          117 RKICSVCLEGFQD-----------KQQI-AKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       117 ~~~C~IC~e~~~~-----------~~~~-~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      -+.|+||...|..           ++.. +.. -|+|.||.+||..||..+..||+++++..
T Consensus        20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~   81 (88)
T COG5194          20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWV   81 (88)
T ss_pred             cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeE
Confidence            4789999988753           2222 222 39999999999999999999999998764

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=1.8e-08  Score=71.78  Aligned_cols=52  Identities=23%  Similarity=0.614  Sum_probs=39.9

Q ss_pred             ccccccccceecccccc------------CCceEE-e-cCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQD------------KQQIAK-L-SCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~------------~~~~~~-l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      .+...+.|+||...+.+            .+.... . .|+|.||..||..|+++++.||+|..+-
T Consensus        42 WDi~vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW  107 (114)
T KOG2930|consen   42 WDIVVDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEW  107 (114)
T ss_pred             eeeeechhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence            45567899999987642            112222 2 3999999999999999999999997754

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.49  E-value=4.3e-08  Score=82.96  Aligned_cols=47  Identities=32%  Similarity=0.664  Sum_probs=43.1

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .-..|.||.+.|..+   .+.||+|.||.-||..+|..+..||.|..++.
T Consensus        22 ~lLRC~IC~eyf~ip---~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~   68 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIP---MITPCSHTFCSLCIRKFLSYKPQCPTCCVTVT   68 (442)
T ss_pred             HHHHHhHHHHHhcCc---eeccccchHHHHHHHHHhccCCCCCceecccc
Confidence            456799999999999   88899999999999999999999999998765

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=7.2e-08  Score=65.14  Aligned_cols=51  Identities=29%  Similarity=0.767  Sum_probs=38.0

Q ss_pred             ccccccceecccccc--------CCc-eEEec-CCCcccHHhHHHHHhc---CCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQD--------KQQ-IAKLS-CSHKFHLDCVLPWLAA---HPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~--------~~~-~~~lp-C~H~Fh~~Ci~~Wl~~---~~~CP~CR~~v~  165 (167)
                      ..++.|.||...|..        ++. ..++. |.|.||..||.+|+..   +..||+||+...
T Consensus        18 ~~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   18 APDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            345699999999874        222 12233 9999999999999964   458999998754

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.8e-07  Score=82.72  Aligned_cols=47  Identities=28%  Similarity=0.682  Sum_probs=39.1

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-----CCCCCcccCccC
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-----PHCPYCRTPVLV  166 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~v~~  166 (167)
                      +..|+||++....+   ..+.|||+||..||.++|...     ..||+|+..|.+
T Consensus       186 ~~~CPICL~~~~~p---~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~  237 (513)
T KOG2164|consen  186 DMQCPICLEPPSVP---VRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITL  237 (513)
T ss_pred             CCcCCcccCCCCcc---cccccCceeeHHHHHHHHhhhcccCCccCCchhhhccc
Confidence            77899999997766   556699999999999988654     389999987753

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.36  E-value=3.1e-07  Score=55.94  Aligned_cols=38  Identities=32%  Similarity=0.737  Sum_probs=22.4

Q ss_pred             cceecccccc-CCceEEecCCCcccHHhHHHHHhcC----CCCC
Q 044515          120 CSVCLEGFQD-KQQIAKLSCSHKFHLDCVLPWLAAH----PHCP  158 (167)
Q Consensus       120 C~IC~e~~~~-~~~~~~lpC~H~Fh~~Ci~~Wl~~~----~~CP  158 (167)
                      |+||.+ |.. .+..+.|+|||.|+.+||..++..+    ..||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 755 3345889999999999999998743    2676

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=2.1e-07  Score=82.07  Aligned_cols=52  Identities=27%  Similarity=0.713  Sum_probs=40.7

Q ss_pred             ccccccceeccccccCC--------------ceEEecCCCcccHHhHHHHHhcC-CCCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQ--------------QIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~--------------~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~~  166 (167)
                      .....|+|||..+.-..              .....||.|+||..|+.+|+..- -.||+||.++++
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            34568999999875311              13446899999999999999854 499999999875

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=98.32  E-value=5.7e-08  Score=65.10  Aligned_cols=50  Identities=32%  Similarity=0.752  Sum_probs=23.4

Q ss_pred             ccccceeccccc-cCCceE-Ee---cCCCcccHHhHHHHHhc---C--------CCCCCcccCccC
Q 044515          117 RKICSVCLEGFQ-DKQQIA-KL---SCSHKFHLDCVLPWLAA---H--------PHCPYCRTPVLV  166 (167)
Q Consensus       117 ~~~C~IC~e~~~-~~~~~~-~l---pC~H~Fh~~Ci~~Wl~~---~--------~~CP~CR~~v~~  166 (167)
                      +..|.||+..+. .++... .-   .|+..||..||..|+..   .        ..||+|+.+|..
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~   67 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW   67 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence            457999999876 332211 11   38999999999999863   1        159999998754

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=98.29  E-value=4e-07  Score=61.30  Aligned_cols=46  Identities=22%  Similarity=0.470  Sum_probs=37.5

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      +..|+|+.+.+.++   +.+++||.|...||..|+.. ..+||+|+.++.
T Consensus         4 ~f~CpIt~~lM~dP---Vi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~   50 (73)
T PF04564_consen    4 EFLCPITGELMRDP---VILPSGHTYERSAIERWLEQNGGTDPFTRQPLS   50 (73)
T ss_dssp             GGB-TTTSSB-SSE---EEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-S
T ss_pred             ccCCcCcCcHhhCc---eeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCC
Confidence            56799999999999   89999999999999999988 789999988765

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.29  E-value=3e-07  Score=76.57  Aligned_cols=45  Identities=27%  Similarity=0.623  Sum_probs=41.5

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      -..|-||-+.|..+   ...+|||.||.-||...|..+..||+||.+.
T Consensus        25 ~lrC~IC~~~i~ip---~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~   69 (391)
T COG5432          25 MLRCRICDCRISIP---CETTCGHTFCSLCIRRHLGTQPFCPVCREDP   69 (391)
T ss_pred             HHHhhhhhheeecc---eecccccchhHHHHHHHhcCCCCCccccccH
Confidence            45799999999988   7888999999999999999999999999864

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.26  E-value=8.9e-07  Score=55.32  Aligned_cols=42  Identities=24%  Similarity=0.723  Sum_probs=32.3

Q ss_pred             ccceeccccccCCceEEecCC-----CcccHHhHHHHHhcC--CCCCCcc
Q 044515          119 ICSVCLEGFQDKQQIAKLSCS-----HKFHLDCVLPWLAAH--PHCPYCR  161 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR  161 (167)
                      .|.||++ ...++.....||.     |.||..|+..|+...  .+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998 3344445678874     889999999999654  4899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=3.5e-07  Score=73.28  Aligned_cols=45  Identities=31%  Similarity=0.710  Sum_probs=40.0

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR  161 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR  161 (167)
                      ..+...|+||++.|..+   ..++|+|.||..||..++.....||.||
T Consensus        10 ~~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             ccccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            34677899999999998   7899999999999999988556899999

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.21  E-value=2e-07  Score=87.38  Aligned_cols=56  Identities=25%  Similarity=0.711  Sum_probs=41.1

Q ss_pred             cccccccccccceeccccccCC---ceEEec-CCCcccHHhHHHHHhc--CCCCCCcccCcc
Q 044515          110 LRRCRSCRKICSVCLEGFQDKQ---QIAKLS-CSHKFHLDCVLPWLAA--HPHCPYCRTPVL  165 (167)
Q Consensus       110 ~~~~~~~~~~C~IC~e~~~~~~---~~~~lp-C~H~Fh~~Ci~~Wl~~--~~~CP~CR~~v~  165 (167)
                      .....++..+|+||+..+..-+   .-...+ |.|.||..|+.+|+..  +.+||+||..+.
T Consensus      1462 i~~~fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1462 IDEKFSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             hhhhcCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            3344567889999998776211   012233 9999999999999975  458999998875

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=2.4e-06  Score=72.72  Aligned_cols=48  Identities=29%  Similarity=0.659  Sum_probs=40.3

Q ss_pred             ccccccceeccccccCCceEEecCCC-cccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSH-KFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H-~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      +...+|.||+.+..+-   .+|||.| -.|..|.+...-+.+.||+||++|.
T Consensus       288 ~~gkeCVIClse~rdt---~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~  336 (349)
T KOG4265|consen  288 ESGKECVICLSESRDT---VVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE  336 (349)
T ss_pred             cCCCeeEEEecCCcce---EEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence            4467899999986554   8999999 5799999887767889999999875

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=98.04  E-value=2e-06  Score=75.21  Aligned_cols=50  Identities=32%  Similarity=0.765  Sum_probs=39.2

Q ss_pred             cccccccceeccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQ-QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~-~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..+-.+|+||+|.+...- .+....|.|.||..|+..|  ...+||+||....
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            345689999999987653 3344569999999999999  5578999987544

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.84  E-value=6.5e-06  Score=70.52  Aligned_cols=51  Identities=35%  Similarity=0.981  Sum_probs=38.8

Q ss_pred             cccccccceeccccccCC----ceEEec-CCCcccHHhHHHHHh--c-----CCCCCCcccCc
Q 044515          114 RSCRKICSVCLEGFQDKQ----QIAKLS-CSHKFHLDCVLPWLA--A-----HPHCPYCRTPV  164 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~----~~~~lp-C~H~Fh~~Ci~~Wl~--~-----~~~CP~CR~~v  164 (167)
                      ...+..|.||++.+....    ...+|| |.|.||..||..|-.  +     .+.||.||...
T Consensus       158 ~s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s  220 (344)
T KOG1039|consen  158 KSSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS  220 (344)
T ss_pred             ccccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence            356789999999876553    123345 999999999999973  3     46899999754

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.81  E-value=2.5e-06  Score=55.96  Aligned_cols=43  Identities=30%  Similarity=0.805  Sum_probs=22.8

Q ss_pred             ccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          117 RKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      -..|++|.+.+..+   +.+ .|.|+||..||..-+.  ..||+|..+.
T Consensus         7 lLrCs~C~~~l~~p---v~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEP---VCLGGCEHIFCSSCIRDCIG--SECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS----B---SSS--B-TTTGGGGTT--TB-SSS--B-
T ss_pred             hcCCcHHHHHhcCC---ceeccCccHHHHHHhHHhcC--CCCCCcCChH
Confidence            34699999998877   544 5999999999988554  3499998765

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=4e-06  Score=71.39  Aligned_cols=49  Identities=29%  Similarity=0.748  Sum_probs=40.0

Q ss_pred             cccccccceeccccccCCceEEec-CCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-AHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~  165 (167)
                      ...+..|+||++.+...   +..+ |.|.||.+||..-+. .++.||.||..+.
T Consensus        40 ~~~~v~c~icl~llk~t---mttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~   90 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKT---MTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV   90 (381)
T ss_pred             hhhhhccHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence            34567899999998765   4555 999999999998875 5679999998765

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.59  E-value=1.4e-05  Score=74.05  Aligned_cols=50  Identities=24%  Similarity=0.500  Sum_probs=43.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ....|++|+..+.+.......+|+|.||..||..|....++||+||..+.
T Consensus       122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~  171 (1134)
T KOG0825|consen  122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFG  171 (1134)
T ss_pred             hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence            45679999999887765566679999999999999999999999998764

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=2.4e-05  Score=72.17  Aligned_cols=49  Identities=27%  Similarity=0.564  Sum_probs=40.1

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCccCC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVLVS  167 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~~s  167 (167)
                      +-..|+.|-..+.+.   ++..|+|.||..|+..-+.. +..||.|..+|.++
T Consensus       642 ~~LkCs~Cn~R~Kd~---vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDA---VITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             hceeCCCccCchhhH---HHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            456899999776655   66679999999999999864 56999999988653

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=2.7e-05  Score=49.58  Aligned_cols=45  Identities=31%  Similarity=0.708  Sum_probs=34.4

Q ss_pred             cccceeccccccCCceEEecCCC-cccHHhHHHHHh-cCCCCCCcccCcc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSH-KFHLDCVLPWLA-AHPHCPYCRTPVL  165 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H-~Fh~~Ci~~Wl~-~~~~CP~CR~~v~  165 (167)
                      ++|.||++.-.+.   +...||| -+|..|-...+. .+..||+||++|.
T Consensus         8 dECTICye~pvds---VlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    8 DECTICYEHPVDS---VLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             cceeeeccCcchH---HHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            6899999985544   5556999 468888766554 6789999999863

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.45  E-value=5.1e-05  Score=63.64  Aligned_cols=50  Identities=28%  Similarity=0.746  Sum_probs=41.8

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhc-----------------------CCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-----------------------HPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-----------------------~~~CP~CR~~v~  165 (167)
                      ....|.||+-.|.++...++.+|.|.||..|+..+|..                       ...||+||..|.
T Consensus       114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            45689999999999998899999999999999877641                       126999998764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=8.4e-05  Score=64.92  Aligned_cols=48  Identities=27%  Similarity=0.656  Sum_probs=43.1

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..+..|.||+..+..+   +.+||||.||..||..-+.....||.||..+.
T Consensus        82 ~sef~c~vc~~~l~~p---v~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~  129 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPP---VVTPCGHSFCLECLDRSLDQETECPLCRDELV  129 (398)
T ss_pred             cchhhhhhhHhhcCCC---ccccccccccHHHHHHHhccCCCCcccccccc
Confidence            4577899999999888   78899999999999998888889999999875

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=97.40  E-value=4.3e-05  Score=64.63  Aligned_cols=49  Identities=22%  Similarity=0.585  Sum_probs=41.5

Q ss_pred             cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ......|.+|--.|.+.   .++. |-|.||.+||...+....+||.|...|-
T Consensus        12 ~n~~itC~LC~GYliDA---TTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih   61 (331)
T KOG2660|consen   12 LNPHITCRLCGGYLIDA---TTITECLHTFCKSCIVKYLEESKYCPTCDIVIH   61 (331)
T ss_pred             cccceehhhccceeecc---hhHHHHHHHHHHHHHHHHHHHhccCCccceecc
Confidence            34567899999999887   4444 9999999999999999999999987653

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.36  E-value=4.1e-05  Score=66.43  Aligned_cols=50  Identities=24%  Similarity=0.738  Sum_probs=38.8

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhc--CCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--HPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--~~~CP~CR~~v~  165 (167)
                      +...-..|-||-+.   ...+.+-||||..|..|+..|-..  .++||.||..|.
T Consensus       365 MgsTFeLCKICaen---dKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIK  416 (563)
T KOG1785|consen  365 MGSTFELCKICAEN---DKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIK  416 (563)
T ss_pred             ccchHHHHHHhhcc---CCCcccccccchHHHHHHHhhcccCCCCCCCceeeEec
Confidence            34455679999987   233466789999999999999743  569999998763

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.29  E-value=9.9e-05  Score=64.43  Aligned_cols=50  Identities=28%  Similarity=0.763  Sum_probs=42.9

Q ss_pred             cccccccceeccccccCCceEE-ecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ..++..|+||+..+.++   .. ..|+|.||..|+..|+..+..||.|+..+..
T Consensus        18 ~~~~l~C~~C~~vl~~p---~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~   68 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDP---VQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQ   68 (391)
T ss_pred             CcccccCccccccccCC---CCCCCCCCcccccccchhhccCcCCcccccccch
Confidence            34578899999999988   44 4799999999999999999999999887653

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.21  E-value=8.8e-05  Score=64.24  Aligned_cols=49  Identities=35%  Similarity=0.769  Sum_probs=39.9

Q ss_pred             cccccccceeccccccC-CceEEecCCCcccHHhHHHHHhcC--CCCCCccc
Q 044515          114 RSCRKICSVCLEGFQDK-QQIAKLSCSHKFHLDCVLPWLAAH--PHCPYCRT  162 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~  162 (167)
                      .+.+..|..|-+.+.-. +.+-.|||.|+||..|+...+.++  .+||-||.
T Consensus       362 ~e~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crk  413 (518)
T KOG1941|consen  362 EETELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRK  413 (518)
T ss_pred             HHHhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            34567899999988654 456678999999999999999765  48999983

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.17  E-value=0.00037  Score=57.80  Aligned_cols=52  Identities=23%  Similarity=0.358  Sum_probs=40.5

Q ss_pred             cccccccccceeccccccCCceEEecCCCcccHHhHHHHHh--cCCCCCCcccCcc
Q 044515          112 RCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA--AHPHCPYCRTPVL  165 (167)
Q Consensus       112 ~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~--~~~~CP~CR~~v~  165 (167)
                      .....+.+|++|-+.=..+  .+..+|+|+||..||..-+.  ...+||.|..++.
T Consensus       234 s~~t~~~~C~~Cg~~PtiP--~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  234 STGTSDTECPVCGEPPTIP--HVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccccCCceeeccCCCCCCC--eeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            3445678999999985555  24456999999999998764  4579999988775

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.15  E-value=0.00038  Score=56.43  Aligned_cols=53  Identities=23%  Similarity=0.545  Sum_probs=42.9

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhc--------CCCCCCcccCccC
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--------HPHCPYCRTPVLV  166 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--------~~~CP~CR~~v~~  166 (167)
                      +.+....|..|-..+..++. +.|-|-|.||+.|+..|-.+        ...||.|..+|+|
T Consensus        46 DsDY~pNC~LC~t~La~gdt-~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFP  106 (299)
T KOG3970|consen   46 DSDYNPNCRLCNTPLASGDT-TRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFP  106 (299)
T ss_pred             hcCCCCCCceeCCccccCcc-eeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCC
Confidence            34456789999999988764 66889999999999999753        2379999998875

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=97.15  E-value=0.00031  Score=69.09  Aligned_cols=53  Identities=26%  Similarity=0.653  Sum_probs=41.9

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC----------CCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH----------PHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~----------~~CP~CR~~v~  165 (167)
                      ....++.|.||+.+--.....+.|.|+|+||..|...-+++.          ..||+|+.+|-
T Consensus      3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            344678999999886666667889999999999998766542          27999998763

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.87  E-value=0.00051  Score=44.18  Aligned_cols=41  Identities=24%  Similarity=0.692  Sum_probs=27.7

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhc--CCCCCC
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--HPHCPY  159 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--~~~CP~  159 (167)
                      ...|+|.+..|.++  +....|+|.|-+..|.+|+..  ...||+
T Consensus        11 ~~~CPiT~~~~~~P--V~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFEDP--VKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-SSE--EEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhhCC--cCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            56799999999988  233469999999999999944  347998

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0007  Score=58.15  Aligned_cols=50  Identities=26%  Similarity=0.617  Sum_probs=42.4

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+.++..|+||+-.-...   +..||+|.=|..||.+.+-+.+.|=+|+..+.
T Consensus       418 p~sEd~lCpICyA~pi~A---vf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~  467 (489)
T KOG4692|consen  418 PDSEDNLCPICYAGPINA---VFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI  467 (489)
T ss_pred             CCcccccCcceecccchh---hccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence            446788999999874444   67899999999999999999999999998764

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.76  E-value=0.00047  Score=54.93  Aligned_cols=43  Identities=19%  Similarity=0.576  Sum_probs=38.2

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccC
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTP  163 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~  163 (167)
                      ..|.||-++|..+   +...|||.||..|...-++....|-+|...
T Consensus       197 F~C~iCKkdy~sp---vvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~  239 (259)
T COG5152         197 FLCGICKKDYESP---VVTECGHSFCSLCAIRKYQKGDECGVCGKA  239 (259)
T ss_pred             eeehhchhhccch---hhhhcchhHHHHHHHHHhccCCcceecchh
Confidence            3799999999988   778899999999999988888899999653

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=96.69  E-value=0.00073  Score=41.97  Aligned_cols=44  Identities=25%  Similarity=0.583  Sum_probs=21.9

Q ss_pred             cceeccccccCCceEEec--CCCcccHHhHHHHHh-cCCCCCCcccCc
Q 044515          120 CSVCLEGFQDKQQIAKLS--CSHKFHLDCVLPWLA-AHPHCPYCRTPV  164 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v  164 (167)
                      |++|.+++...+ ...+|  |++.++..|...-+. ....||-||.+.
T Consensus         1 cp~C~e~~d~~d-~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETD-KDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCC-TT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCC-CccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984432 23455  899999999888775 467999999875

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0011  Score=55.65  Aligned_cols=44  Identities=23%  Similarity=0.431  Sum_probs=39.3

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      ..|-||..+|..+   ++..|+|.||..|...-++....|++|.+..
T Consensus       242 f~c~icr~~f~~p---Vvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRP---VVTKCGHYFCEVCALKPYQKGEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccc---hhhcCCceeehhhhccccccCCcceeccccc
Confidence            3599999999999   8888999999999999888889999997654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=96.37  E-value=0.0014  Score=58.92  Aligned_cols=49  Identities=24%  Similarity=0.586  Sum_probs=39.0

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-----CCCCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-----HPHCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-----~~~CP~CR~~v  164 (167)
                      ...++..|.+|.+.-.+.   +...|.|.||..||..++..     +-+||+|...+
T Consensus       532 enk~~~~C~lc~d~aed~---i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDY---IESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cccCceeecccCChhhhh---HhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccc
Confidence            445677899999986665   67789999999999988752     34899997654

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=96.37  E-value=0.0015  Score=46.04  Aligned_cols=34  Identities=24%  Similarity=0.556  Sum_probs=27.9

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHH
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVL  148 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~  148 (167)
                      ..++..|++|...+.. ......||+|.||..|+.
T Consensus        75 i~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   75 ITESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             ECCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            3456679999999987 466778999999999974

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.003  Score=49.64  Aligned_cols=49  Identities=29%  Similarity=0.790  Sum_probs=33.7

Q ss_pred             ccccceeccccccCC----ceEEecCCCcccHHhHHHHHhc----C-------CCCCCcccCcc
Q 044515          117 RKICSVCLEGFQDKQ----QIAKLSCSHKFHLDCVLPWLAA----H-------PHCPYCRTPVL  165 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~----~~~~lpC~H~Fh~~Ci~~Wl~~----~-------~~CP~CR~~v~  165 (167)
                      -..|.||+..--++.    ..-...|+..||.-|+..||..    .       ..||+|..+|-
T Consensus       165 ~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pia  228 (234)
T KOG3268|consen  165 LGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIA  228 (234)
T ss_pred             hhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcce
Confidence            345777776543332    2223569999999999999863    1       26999998874

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.22  E-value=0.0033  Score=54.86  Aligned_cols=48  Identities=23%  Similarity=0.501  Sum_probs=37.9

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc--------CCCCCCccc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--------HPHCPYCRT  162 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--------~~~CP~CR~  162 (167)
                      .....|.||+++.....-...+||+|.||..|+..++..        .-.||-+.-
T Consensus       182 ~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  182 NSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            345689999999877677888999999999999999752        126876643

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=96.20  E-value=0.0026  Score=59.73  Aligned_cols=50  Identities=28%  Similarity=0.749  Sum_probs=36.5

Q ss_pred             ccccccccceeccccccCCceEE-ecCCCcccHHhHHHHHhcCC-------CCCCccc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHP-------HCPYCRT  162 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~~-------~CP~CR~  162 (167)
                      ......+|.||++.+.....+-. -.|-|+||..||..|..+..       .||.|..
T Consensus       187 l~~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqs  244 (950)
T KOG1952|consen  187 LSNRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQS  244 (950)
T ss_pred             HhcCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccc
Confidence            34456889999999876543222 23899999999999975421       6999984

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.17  E-value=0.0029  Score=38.96  Aligned_cols=40  Identities=28%  Similarity=0.803  Sum_probs=26.5

Q ss_pred             cceeccccccCCceEEecC--CC---cccHHhHHHHHhc--CCCCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSC--SH---KFHLDCVLPWLAA--HPHCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC--~H---~Fh~~Ci~~Wl~~--~~~CP~C  160 (167)
                      |-||++.-.+.. ....||  .-   ..|..|+..|+..  +..|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            678998866554 345675  44   7899999999974  4579887

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.95  E-value=0.0071  Score=46.57  Aligned_cols=48  Identities=21%  Similarity=0.609  Sum_probs=34.5

Q ss_pred             cccccccceeccccccCCceEEec--CCC---cccHHhHHHHHhcC--CCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS--CSH---KFHLDCVLPWLAAH--PHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp--C~H---~Fh~~Ci~~Wl~~~--~~CP~CR~~v~  165 (167)
                      ...+..|-||+++-.+    ..-|  |..   ..|.+|+..|+..+  ..|++|+.++.
T Consensus         5 s~~~~~CRIC~~~~~~----~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          5 SLMDKCCWICKDEYDV----VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCCeeEecCCCCCC----ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            3456789999988432    1246  444   55999999999754  48999988653

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.94  E-value=0.0048  Score=46.24  Aligned_cols=36  Identities=17%  Similarity=0.530  Sum_probs=30.0

Q ss_pred             ccccceeccccccCCceEEecCC------CcccHHhHHHHHh
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCS------HKFHLDCVLPWLA  152 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~------H~Fh~~Ci~~Wl~  152 (167)
                      ..+|.||++.+.....++.++|+      |.||.+|+..|-.
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~   67 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRR   67 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHh
Confidence            45799999999985667777775      8999999999943

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.0057  Score=52.51  Aligned_cols=47  Identities=28%  Similarity=0.613  Sum_probs=34.7

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .......|.||.+...+.   +.+||||.-|  |..-- +....||+||..|.
T Consensus       301 ~~~~p~lcVVcl~e~~~~---~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSA---VFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             ccCCCCceEEecCCccce---eeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            444567899999987664   8899999876  55443 33456999998764

>PHA03096 p28-like protein; Provisional

Probab=95.88  E-value=0.0037  Score=52.46  Aligned_cols=44  Identities=34%  Similarity=0.718  Sum_probs=31.3

Q ss_pred             cccceeccccccC----CceEEec-CCCcccHHhHHHHHhcC---CCCCCcc
Q 044515          118 KICSVCLEGFQDK----QQIAKLS-CSHKFHLDCVLPWLAAH---PHCPYCR  161 (167)
Q Consensus       118 ~~C~IC~e~~~~~----~~~~~lp-C~H~Fh~~Ci~~Wl~~~---~~CP~CR  161 (167)
                      ..|.||++.....    ..-..|+ |.|.||..|+..|....   .+||.|+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~  230 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENR  230 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCcccc
Confidence            6899999986543    2334566 99999999999997532   2444443

>PHA02862 5L protein; Provisional

Probab=95.77  E-value=0.0083  Score=45.55  Aligned_cols=48  Identities=19%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             ccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcC--CCCCCcccCc
Q 044515          117 RKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAH--PHCPYCRTPV  164 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v  164 (167)
                      .+.|-||++.-.+....-.- .-....|..|+..|+...  ..|+.|+.++
T Consensus         2 ~diCWIC~~~~~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY   52 (156)
T PHA02862          2 SDICWICNDVCDERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKY   52 (156)
T ss_pred             CCEEEEecCcCCCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeE
Confidence            35799999984333100000 003567999999999643  4899999865

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=95.57  E-value=0.0042  Score=37.60  Aligned_cols=41  Identities=27%  Similarity=0.729  Sum_probs=22.9

Q ss_pred             cceeccccccCCceEEecCCCcccHHhHHHHHhcCC--CCCCc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP--HCPYC  160 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~--~CP~C  160 (167)
                      |.+|.+....+..-....|+-.+|..|+..++....  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            667777777663222224999999999999997655  79987

; PDB: 3NW0_A 2CT0_A.

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.42  E-value=0.0084  Score=38.21  Aligned_cols=45  Identities=24%  Similarity=0.457  Sum_probs=33.0

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ...|..|...-..+   ..+||+|..+..|..-+  .-+.||+|..++..
T Consensus         7 ~~~~~~~~~~~~~~---~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKG---TVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEcccccccc---ccccccceeeccccChh--hccCCCCCCCcccC
Confidence            34566666654444   78999999999996553  55689999988764

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.0061  Score=47.19  Aligned_cols=31  Identities=29%  Similarity=0.682  Sum_probs=27.6

Q ss_pred             cccccccceeccccccCCceEEecCCCcccH
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHL  144 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~  144 (167)
                      .....+|.||+|++..++.+..|||-.+||+
T Consensus       174 ~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  174 KDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            3456789999999999999999999999996

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=95.16  E-value=0.015  Score=49.46  Aligned_cols=45  Identities=29%  Similarity=0.664  Sum_probs=37.0

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTP  163 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~  163 (167)
                      ....|+||+....++   ..+. -|-+||..||...+.+.+.||+=..+
T Consensus       299 ~~~~CpvClk~r~Np---tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p  344 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNP---TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYP  344 (357)
T ss_pred             ccccChhHHhccCCC---ceEEecceEEeHHHHHHHHHhcCCCCccCCc
Confidence            456899999998877   4444 69999999999999999999975433

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.09  E-value=0.02  Score=49.27  Aligned_cols=49  Identities=24%  Similarity=0.573  Sum_probs=38.4

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHH--HhcCCCCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPW--LAAHPHCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~W--l~~~~~CP~CR~~v  164 (167)
                      .++++..|.||-+.+.-.   ..+||+|..|.-|....  |-..+.||+||..-
T Consensus        57 tDEen~~C~ICA~~~TYs---~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~  107 (493)
T COG5236          57 TDEENMNCQICAGSTTYS---ARYPCGHQICHACAVRLRALYMQKGCPLCRTET  107 (493)
T ss_pred             cccccceeEEecCCceEE---EeccCCchHHHHHHHHHHHHHhccCCCcccccc
Confidence            445667899999986544   67899999999997664  45678999999753

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.04  E-value=0.012  Score=55.49  Aligned_cols=43  Identities=23%  Similarity=0.605  Sum_probs=35.4

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTP  163 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~  163 (167)
                      ....|.+|--.+.-|  .++..|+|.||.+|+.   .....||-|+..
T Consensus       839 q~skCs~C~~~LdlP--~VhF~CgHsyHqhC~e---~~~~~CP~C~~e  881 (933)
T KOG2114|consen  839 QVSKCSACEGTLDLP--FVHFLCGHSYHQHCLE---DKEDKCPKCLPE  881 (933)
T ss_pred             eeeeecccCCccccc--eeeeecccHHHHHhhc---cCcccCCccchh
Confidence            346899999988877  4778899999999988   456789999863

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.83  E-value=0.0051  Score=51.67  Aligned_cols=42  Identities=26%  Similarity=0.748  Sum_probs=31.5

Q ss_pred             ccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ...|.|||+.-.   ..+.|+|||. -|..|-...    +.||+||+.|.
T Consensus       300 ~~LC~ICmDaP~---DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAPR---DCVFLECGHMVTCTKCGKRM----NECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCCc---ceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence            678999998744   4489999994 477775442    38999998654

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.80  E-value=0.018  Score=49.50  Aligned_cols=51  Identities=18%  Similarity=0.363  Sum_probs=36.3

Q ss_pred             ccccccceeccccccCCce-EEecCCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQI-AKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~-~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~  165 (167)
                      .+++.|++|++.+...++- .-.+||...|..|...--+ -+..||-||....
T Consensus        12 deed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~   64 (480)
T COG5175          12 DEEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD   64 (480)
T ss_pred             cccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence            3455699999998766542 2245899999999666433 3568999998654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.75  E-value=0.032  Score=46.01  Aligned_cols=49  Identities=22%  Similarity=0.354  Sum_probs=43.0

Q ss_pred             cccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          116 CRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      ....|+||.+.+.+......| ||||+|+..|+...+.....||+|-.++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~pl  269 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPL  269 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcC
Confidence            457899999999988777777 4999999999999999999999997765

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=94.74  E-value=0.017  Score=48.28  Aligned_cols=47  Identities=23%  Similarity=0.504  Sum_probs=38.0

Q ss_pred             cccccceeccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCCCccc
Q 044515          116 CRKICSVCLEGFQDKQ-QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT  162 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~-~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~  162 (167)
                      ....|+||.+.+-... .+..++|+|..|..|+........+||+|..
T Consensus       157 ~~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  157 SEFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             ccCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            3455999999876543 4456889999999999998877799999977

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.62  E-value=0.018  Score=48.65  Aligned_cols=42  Identities=26%  Similarity=0.622  Sum_probs=35.0

Q ss_pred             cccceeccccccCCceEEec-CCCcccHHhHHHHH-hcCCCCCCccc
Q 044515          118 KICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWL-AAHPHCPYCRT  162 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl-~~~~~CP~CR~  162 (167)
                      ..|+.|...+..+   ...+ |+|.||..||..-| .....||.|..
T Consensus       275 LkCplc~~Llrnp---~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNP---MKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCc---ccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            6799999998877   5556 89999999999876 45679999954

>PF04641 Rtf2: Rtf2 RING-finger

Probab=94.47  E-value=0.043  Score=45.29  Aligned_cols=51  Identities=25%  Similarity=0.509  Sum_probs=40.2

Q ss_pred             cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ......|||....|......+.| +|||+|...+|... .....||+|-.++.
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~  161 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFT  161 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccc
Confidence            34567899999999666555555 69999999999996 23568999988764

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=94.36  E-value=0.025  Score=47.87  Aligned_cols=44  Identities=25%  Similarity=0.545  Sum_probs=35.6

Q ss_pred             ccccccceeccccccCCceEEecC--CCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSC--SHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC--~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+-.+|+||.+.+..+    +..|  ||.-|..|-.+   ....||.|+.++.
T Consensus        46 ~~lleCPvC~~~l~~P----i~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g   91 (299)
T KOG3002|consen   46 LDLLDCPVCFNPLSPP----IFQCDNGHLACSSCRTK---VSNKCPTCRLPIG   91 (299)
T ss_pred             hhhccCchhhccCccc----ceecCCCcEehhhhhhh---hcccCCccccccc
Confidence            3456899999999888    4566  79999999654   5779999998875

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=93.54  E-value=0.084  Score=33.54  Aligned_cols=34  Identities=29%  Similarity=0.573  Sum_probs=28.5

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHH
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLP  149 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~  149 (167)
                      ....|.+|-+.|.+++.+++-| |+-.+|+.|...
T Consensus         4 ~~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    4 EGCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             cCccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            3457999999998888888888 999999999543

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=93.05  E-value=0.074  Score=39.87  Aligned_cols=48  Identities=23%  Similarity=0.452  Sum_probs=36.9

Q ss_pred             cccccceeccccccCCceEEe-c---CCCcccHHhHHHHHhc---CCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKL-S---CSHKFHLDCVLPWLAA---HPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~l-p---C~H~Fh~~Ci~~Wl~~---~~~CP~CR~~v~~  166 (167)
                      .-.+|.||.|...+.   ..| |   ||-..|.-|-...|+.   ...||+|+..+-.
T Consensus        79 ~lYeCnIC~etS~ee---~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs  133 (140)
T PF05290_consen   79 KLYECNICKETSAEE---RFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS  133 (140)
T ss_pred             CceeccCcccccchh---hcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence            456899999986655   334 3   8999999998887664   4589999988754

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.00  E-value=0.075  Score=46.64  Aligned_cols=32  Identities=34%  Similarity=0.913  Sum_probs=25.3

Q ss_pred             ceEEecCCCcccHHhHHHHHhc--CCCCCCcccC
Q 044515          132 QIAKLSCSHKFHLDCVLPWLAA--HPHCPYCRTP  163 (167)
Q Consensus       132 ~~~~lpC~H~Fh~~Ci~~Wl~~--~~~CP~CR~~  163 (167)
                      .++.+.|+|.|..+||..|+.+  ...||.|...
T Consensus        21 r~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen   21 RIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             EEeeecccccccHHHHHHHHhhhhhhhCcccCCh
Confidence            3456779999999999999953  2379999754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.89  E-value=0.0065  Score=52.80  Aligned_cols=50  Identities=26%  Similarity=0.608  Sum_probs=42.4

Q ss_pred             cccccceeccccccC-CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDK-QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ....|+||.+.+... +.+..+-|+|.+|..||.+|+.....||.|+..++
T Consensus       195 lv~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~  245 (465)
T KOG0827|consen  195 LVGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELP  245 (465)
T ss_pred             HHhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhh
Confidence            356899999998765 45556779999999999999999889999998775

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.33  E-value=0.057  Score=50.44  Aligned_cols=43  Identities=23%  Similarity=0.722  Sum_probs=34.3

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcC--CCCCCcccCc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH--PHCPYCRTPV  164 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v  164 (167)
                      ..|.||++    .+.....+|+|.||..|+..-+...  ..||.|+..+
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l  499 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVL  499 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHH
Confidence            78999999    2334777899999999999987543  3699998755

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.89  E-value=0.15  Score=44.53  Aligned_cols=49  Identities=27%  Similarity=0.412  Sum_probs=40.2

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcccCc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPV  164 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~v  164 (167)
                      ....|||=.+.-.+.+.+..|.|||+...+-|.....+.   ..||+|-...
T Consensus       333 SvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~  384 (394)
T KOG2817|consen  333 SVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQ  384 (394)
T ss_pred             ceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCccc
Confidence            456799999888888888999999999999999976543   4799996543

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.16  E-value=0.11  Score=49.53  Aligned_cols=37  Identities=24%  Similarity=0.513  Sum_probs=29.4

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHH
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL  151 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl  151 (167)
                      .+.++.|.+|...+... .-...||+|.||.+||..-.
T Consensus       814 ~ep~d~C~~C~~~ll~~-pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLIK-PFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ecCccchHHhcchhhcC-cceeeeccchHHHHHHHHHH
Confidence            34567899999987654 45678999999999998764

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=0.11  Score=44.24  Aligned_cols=43  Identities=26%  Similarity=0.578  Sum_probs=29.9

Q ss_pred             cccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCc
Q 044515          118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV  164 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v  164 (167)
                      -.|.-|--.+..-  -..+||.|+||.+|...  ...+.||.|-..|
T Consensus        91 HfCd~Cd~PI~IY--GRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFPIAIY--GRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCcceee--ecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            4566665544321  25679999999999765  3467999997765

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=89.44  E-value=0.12  Score=50.93  Aligned_cols=45  Identities=27%  Similarity=0.738  Sum_probs=38.1

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCccc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT  162 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~  162 (167)
                      ....|.||.+.+..-.  .+..|+|.+|..|+..|+..+..||.|+.
T Consensus      1152 ~~~~c~ic~dil~~~~--~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQG--GIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cccchHHHHHHHHhcC--CeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            4558999999987321  56679999999999999999999999974

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.42  E-value=0.23  Score=43.08  Aligned_cols=28  Identities=32%  Similarity=0.915  Sum_probs=21.6

Q ss_pred             CCCcccHHhHHHHHhcCC-------------CCCCcccCcc
Q 044515          138 CSHKFHLDCVLPWLAAHP-------------HCPYCRTPVL  165 (167)
Q Consensus       138 C~H~Fh~~Ci~~Wl~~~~-------------~CP~CR~~v~  165 (167)
                      |.-.+|.+|+.+|+...+             .||+||+.+-
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FC  351 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFC  351 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccce
Confidence            556679999999986432             7999999763

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.17  E-value=0.19  Score=40.35  Aligned_cols=39  Identities=31%  Similarity=0.628  Sum_probs=27.8

Q ss_pred             cceeccccccCCceEEecCCC-cccHHhHHHHHhcCCCCCCcccCcc
Q 044515          120 CSVCLEGFQDKQQIAKLSCSH-KFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       120 C~IC~e~~~~~~~~~~lpC~H-~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      |-+|-+.   ...+..+||.| .+|..|-..    -..||+|+....
T Consensus       161 Cr~C~~~---~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~  200 (207)
T KOG1100|consen  161 CRKCGER---EATVLLLPCRHLCLCGICDES----LRICPICRSPKT  200 (207)
T ss_pred             ceecCcC---CceEEeecccceEeccccccc----CccCCCCcChhh
Confidence            8888776   34467789988 667777433    457999987653

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.83  E-value=0.2  Score=41.50  Aligned_cols=52  Identities=21%  Similarity=0.595  Sum_probs=34.9

Q ss_pred             ccccccccceeccccccCCce-EEecC-----CCcccHHhHHHHHhcCC--------CCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQI-AKLSC-----SHKFHLDCVLPWLAAHP--------HCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~-~~lpC-----~H~Fh~~Ci~~Wl~~~~--------~CP~CR~~v  164 (167)
                      ..+.+..|-||+..=++.... -+-||     .|=.|..|+..|+..++        +||.|+...
T Consensus        16 ~~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY   81 (293)
T KOG3053|consen   16 NQELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY   81 (293)
T ss_pred             ccccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence            344577899999864443211 12255     47789999999985322        699998764

>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.64  E-value=0.16  Score=44.39  Aligned_cols=38  Identities=24%  Similarity=0.610  Sum_probs=27.5

Q ss_pred             cccccceeccccccC-CceEEecCCCcccHHhHHHHHhc
Q 044515          116 CRKICSVCLEGFQDK-QQIAKLSCSHKFHLDCVLPWLAA  153 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~  153 (167)
                      ...+|.||+.+.... .......|+|.||..|+.+.+..
T Consensus       145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev  183 (384)
T KOG1812|consen  145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV  183 (384)
T ss_pred             ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence            356899999544433 33334569999999999998864

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=88.41  E-value=0.32  Score=45.91  Aligned_cols=26  Identities=27%  Similarity=0.678  Sum_probs=22.6

Q ss_pred             EEecCCCcccHHhHHHHHhcCCCCCC
Q 044515          134 AKLSCSHKFHLDCVLPWLAAHPHCPY  159 (167)
Q Consensus       134 ~~lpC~H~Fh~~Ci~~Wl~~~~~CP~  159 (167)
                      +...|+|..|.+|...|+.....||.
T Consensus      1044 ~Cg~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1044 FCGTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred             hhccccccccHHHHHHHHhcCCcCCC
Confidence            34569999999999999999999983

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=87.93  E-value=0.18  Score=46.73  Aligned_cols=43  Identities=26%  Similarity=0.612  Sum_probs=31.5

Q ss_pred             ccccceeccccccCC-ceEEecCCCcccHHhHHHHHhcCCCCCCccc
Q 044515          117 RKICSVCLEGFQDKQ-QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT  162 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~-~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~  162 (167)
                      -..|.||+..|.... ..+.|.|||..|..|+..-  -+.+|| |+.
T Consensus        11 ~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~   54 (861)
T KOG3161|consen   11 LLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR   54 (861)
T ss_pred             HhhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence            457999988876543 3355679999999999875  456777 543

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=87.55  E-value=0.2  Score=31.04  Aligned_cols=32  Identities=28%  Similarity=0.756  Sum_probs=23.2

Q ss_pred             EecC-CCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          135 KLSC-SHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       135 ~lpC-~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      .+.| .|..|..|+...+.....||+|..+++.
T Consensus        15 Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt   47 (50)
T PF03854_consen   15 LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT   47 (50)
T ss_dssp             EEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred             eeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence            4457 5899999999999999999999998864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=86.81  E-value=0.39  Score=39.77  Aligned_cols=48  Identities=23%  Similarity=0.627  Sum_probs=35.0

Q ss_pred             ccccceeccccccCCc-eEEecCC-----CcccHHhHHHHHh--cCCCCCCcccCc
Q 044515          117 RKICSVCLEGFQDKQQ-IAKLSCS-----HKFHLDCVLPWLA--AHPHCPYCRTPV  164 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~-~~~lpC~-----H~Fh~~Ci~~Wl~--~~~~CP~CR~~v  164 (167)
                      +..|-||.++...... ....||.     +..|..|+..|+.  ....|.+|....
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~  133 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFF  133 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccc
Confidence            5689999997654321 3456653     5679999999997  556899997754

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=86.74  E-value=0.17  Score=47.12  Aligned_cols=46  Identities=24%  Similarity=0.631  Sum_probs=37.4

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcC---CCCCCcccCc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPV  164 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~v  164 (167)
                      ...+|+||...+..+   ..+.|.|.|+..|+..-+...   ..||+|+..+
T Consensus        20 k~lEc~ic~~~~~~p---~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~   68 (684)
T KOG4362|consen   20 KILECPICLEHVKEP---SLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDI   68 (684)
T ss_pred             hhccCCceeEEeecc---chhhhhHHHHhhhhhceeeccCccccchhhhhhh
Confidence            366899999999888   778899999999987765433   4799998655

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=85.50  E-value=0.53  Score=38.83  Aligned_cols=46  Identities=26%  Similarity=0.635  Sum_probs=33.3

Q ss_pred             cccccceeccc-cccCC-ceEEec-CCCcccHHhHHHHHhcCC-CCC--Ccc
Q 044515          116 CRKICSVCLEG-FQDKQ-QIAKLS-CSHKFHLDCVLPWLAAHP-HCP--YCR  161 (167)
Q Consensus       116 ~~~~C~IC~e~-~~~~~-~~~~lp-C~H~Fh~~Ci~~Wl~~~~-~CP--~CR  161 (167)
                      .+..|+||..+ |-.++ ++.+-| |-|.+|.+|+..-+.... .||  -|.
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~   60 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCG   60 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence            35689999986 34444 333336 999999999999887654 799  564

>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]

Probab=85.41  E-value=0.44  Score=38.48  Aligned_cols=43  Identities=26%  Similarity=0.617  Sum_probs=35.8

Q ss_pred             cccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCR  161 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR  161 (167)
                      .-..|.+|.+-...+   +.. .|+-.+|..|+...++....||.|.
T Consensus       180 nlk~Cn~Ch~LvIqg---~rCg~c~i~~h~~c~qty~q~~~~cphc~  223 (235)
T KOG4718|consen  180 NLKNCNLCHCLVIQG---IRCGSCNIQYHRGCIQTYLQRRDICPHCG  223 (235)
T ss_pred             HHHHHhHhHHHhhee---eccCcccchhhhHHHHHHhcccCcCCchh
Confidence            346899999987766   333 4889999999999999999999994

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.66  E-value=0.53  Score=39.85  Aligned_cols=27  Identities=22%  Similarity=0.673  Sum_probs=21.3

Q ss_pred             CCCcccHHhHHHHHhc-------------CCCCCCcccCc
Q 044515          138 CSHKFHLDCVLPWLAA-------------HPHCPYCRTPV  164 (167)
Q Consensus       138 C~H~Fh~~Ci~~Wl~~-------------~~~CP~CR~~v  164 (167)
                      |...+|.+|+.+|+..             +-+||+||+.+
T Consensus       325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~f  364 (381)
T KOG3899|consen  325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNF  364 (381)
T ss_pred             cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhce
Confidence            5677889999999853             23799999875

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=83.59  E-value=0.84  Score=43.40  Aligned_cols=49  Identities=12%  Similarity=0.159  Sum_probs=34.4

Q ss_pred             cccccceeccccccCC-ceEEec---CCCcccHHhHHHHHhc------CCCCCCcccCc
Q 044515          116 CRKICSVCLEGFQDKQ-QIAKLS---CSHKFHLDCVLPWLAA------HPHCPYCRTPV  164 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~-~~~~lp---C~H~Fh~~Ci~~Wl~~------~~~CP~CR~~v  164 (167)
                      ....|.||..++.++. ....+|   |.|.||..||..|..+      .-.|++|..-|
T Consensus        95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci  153 (1134)
T KOG0825|consen   95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV  153 (1134)
T ss_pred             cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence            4567888887777632 223344   9999999999999753      23688887654

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=82.17  E-value=1  Score=42.98  Aligned_cols=51  Identities=16%  Similarity=0.559  Sum_probs=36.5

Q ss_pred             ccccccccceeccccccCCceEEecCC-----CcccHHhHHHHHhcC--CCCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCS-----HKFHLDCVLPWLAAH--PHCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~v  164 (167)
                      ..+++..|-||..+-..++.+- -||.     ...|.+|+.+|+.-.  ..|-+|..++
T Consensus         8 mN~d~~~CRICr~e~~~d~pLf-hPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~   65 (1175)
T COG5183           8 MNEDKRSCRICRTEDIRDDPLF-HPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEY   65 (1175)
T ss_pred             CCccchhceeecCCCCCCCcCc-ccccccchhHHHHHHHHHHHHhcCCCcceeeeccee
Confidence            4455688999998865554433 3543     357999999999744  4799998765

>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=80.93  E-value=0.86  Score=38.45  Aligned_cols=37  Identities=27%  Similarity=0.595  Sum_probs=29.4

Q ss_pred             cccccceeccccccCCceEEecC----CCcccHHhHHHHHhcCC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSC----SHKFHLDCVLPWLAAHP  155 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC----~H~Fh~~Ci~~Wl~~~~  155 (167)
                      .-..|.+|.|.+++.   ..+.|    .|.||..|-.+.++.+.
T Consensus       267 apLcCTLC~ERLEDT---HFVQCPSVp~HKFCFPCSResIK~Qg  307 (352)
T KOG3579|consen  267 APLCCTLCHERLEDT---HFVQCPSVPSHKFCFPCSRESIKQQG  307 (352)
T ss_pred             CceeehhhhhhhccC---ceeecCCCcccceecccCHHHHHhhc
Confidence            447899999999877   44455    79999999999887543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	167
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		3e-06
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		6e-06
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		2e-05
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		4e-05
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		2e-04

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 28/49 (57%)
Query: 117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
            ++C+VCLE F+ + ++    C H FH  C++ WL     CP C  PVL
Sbjct: 15  HELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCR 161
           C VC E +   + + +L C+H FH  C++PWL  H  CP CR
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCR 59

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
           C+VCL   +D ++   L  C H FH +CV  WL +H  CP CR  V+V
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRT 162
           +S + +C VC+  F+ +Q +  L C+H+FH  CV  WL A+  CP CR 
Sbjct: 20  QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C++CL   ++ + + +L C H FH  CV  WL  +  CP CR  +
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDI 61

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-15
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	2e-15
2ect_A	78	Ring finger protein 126; metal binding protein, st	2e-15
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	5e-15
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	2e-14
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	8e-14
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	1e-11
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-11
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	4e-09
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	5e-09
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	3e-08
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	9e-08
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	1e-07
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-07
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	5e-07
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-07
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-07
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	1e-06
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-06
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	5e-06
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	2e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	3e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	3e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	4e-05
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	9e-05
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	9e-05
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	5e-04

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 19/51 (37%), Positives = 29/51 (56%)

Query: 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
           +  ++C+VCLE F+ + ++    C H FH  C++ WL     CP C  PVL
Sbjct: 13  NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL 63

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 66.6 bits (163), Expect = 2e-15
 Identities = 15/45 (33%), Positives = 18/45 (40%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C   +       +L C H FH  CV  WL     CP CR   
Sbjct: 43  CPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMF 87

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 65.9 bits (161), Expect = 2e-15
 Identities = 18/45 (40%), Positives = 26/45 (57%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C VC E +   + + +L C+H FH  C++PWL  H  CP CR  +
Sbjct: 18  CPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 65.1 bits (159), Expect = 5e-15
 Identities = 16/48 (33%), Positives = 25/48 (52%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS 167
           C++CL   ++ + + +L C H FH  CV  WL  +  CP CR  +   
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
           C VC+  F+ +Q +  L C+H+FH  CV  WL A+  CP CR    
Sbjct: 26  CVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSG 71

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 61.4 bits (150), Expect = 8e-14
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
           C+VCL   +D ++   L  C H FH +CV  WL +H  CP CR  V+V
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 58.6 bits (142), Expect = 1e-12
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL 165
           C +C++G  D      L C+H F   C+  W   H +CP CR  + 
Sbjct: 18  CCICMDGRADL----ILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 56.3 bits (136), Expect = 1e-11
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +CLE   +      L C H F   C+  W+  +P CP C+ PV
Sbjct: 8   CPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 54.2 bits (131), Expect = 6e-11
 Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 120 CSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +CLE     + +A  L C H  H  C    L     CP C  P 
Sbjct: 8   CPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPS 53

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 49.5 bits (118), Expect = 4e-09
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 120 CSVCLEGFQDKQQ----IAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C++G+ +  Q    I    C H F   C+   L     CP CR  +
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 66

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 49.9 bits (119), Expect = 5e-09
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 105 RWPLKLRRCRSCR----KICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPY 159
            W ++   C  CR      C  C    + +  +     C+H FH  C+  W+  +  CP 
Sbjct: 10  SWDVECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPL 69

Query: 160 CRTP 163
           C+  
Sbjct: 70  CQQD 73

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 47.5 bits (113), Expect = 3e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 120 CSVCLEGFQD----KQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C++G+ +     + I    C H F   C+   L     CP CR  +
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 45.9 bits (109), Expect = 9e-08
 Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 120 CSVCLEGFQD----KQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C++G+ +     + I    C H F   C+   L     CP CR  +
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 46.7 bits (110), Expect = 1e-07
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 8/68 (11%)

Query: 104 SRWPLKLRRCRSCRKICSVCLEGFQ--------DKQQIAKLSCSHKFHLDCVLPWLAAHP 155
             W + +  C  CR          Q        ++  +A   C+H FH  C+  WL    
Sbjct: 31  WAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 90

Query: 156 HCPYCRTP 163
            CP     
Sbjct: 91  VCPLDNRE 98

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 46.4 bits (109), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 8/67 (11%)

Query: 105 RWPLKLRRCRSCRKICSVCLEGFQ--------DKQQIAKLSCSHKFHLDCVLPWLAAHPH 156
            W + +  C  CR          Q        ++  +A   C+H FH  C+  WL     
Sbjct: 43  AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 102

Query: 157 CPYCRTP 163
           CP     
Sbjct: 103 CPLDNRE 109

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           +CS+C     D   I    C H F   C++        CP C   V
Sbjct: 17  LCSICKGYLIDATTI--TECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 44.4 bits (105), Expect = 5e-07
 Identities = 14/45 (31%), Positives = 17/45 (37%), Gaps = 3/45 (6%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C + FQ+        C H F   C L    A P C  C  P 
Sbjct: 18  CFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPT 59

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 43.3 bits (102), Expect = 9e-07
 Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 3/45 (6%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C++CL+          L C H F   CV         C  CR  +
Sbjct: 18  CAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 16/64 (25%)

Query: 120 CSVCLEGFQDKQQIAK-----LSCSHKFHLDCVLPWLAA-----------HPHCPYCRTP 163
           C++C     D  ++         C  K H  C+  W                 CP+C+  
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAK 370

Query: 164 VLVS 167
           +  S
Sbjct: 371 LSTS 374

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVLVS 167
           C +C+E  +D +      CS      C+  WL      CP+CR P+ + 
Sbjct: 25  CFICMEKLRDARLC--PHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 44.4 bits (104), Expect = 5e-06
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPH-CPYCRTPV 164
             S  ++C +C E  +D   +    C H     C+  W  +    CP+CR  +
Sbjct: 328 MGSTFQLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 377

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 41.6 bits (97), Expect = 2e-05
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +C E F +      L+C+H F   C+  W+     CP CR  +
Sbjct: 67  CIICSEYFIE---AVTLNCAHSFCSYCINEWMKRKIECPICRKDI 108

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
            C +C E F     I    CSH +   C+  +L+    CP C   V
Sbjct: 24  RCGICFEYFNIAMII--PQCSHNYCSLCIRKFLSYKTQCPTCCVTV 67

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 120 CSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAHP---HCPYCRTPVLVS 167
           C +C+E F ++Q   K L C H     C+   LA+      CP+C     ++
Sbjct: 18  CPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 2/46 (4%)

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           +C +C   F D   I  + C H F   C++ +L    +CP C   V
Sbjct: 17  MCVLCGGYFIDATTI--IECLHSFCKTCIVRYLETSKYCPICDVQV 60

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 38.4 bits (89), Expect = 9e-05
 Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH--PHCPYCRTP 163
           KIC++C       Q  +  +C  + HL CV  +  ++  P CP+C   
Sbjct: 16  KICNICHSLL--IQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 61

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 39.1 bits (90), Expect = 9e-05
 Identities = 15/65 (23%), Positives = 19/65 (29%), Gaps = 20/65 (30%)

Query: 120 CSVCLE---------------GFQDKQQIAKLSCSHKFHLDCVLPWLAA-----HPHCPY 159
           C +C+E                           CSH FHL C+L             CP 
Sbjct: 28  CIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPS 87

Query: 160 CRTPV 164
           C+T  
Sbjct: 88  CKTIY 92

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 37.6 bits (86), Expect = 5e-04
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 129 DKQQIAKLSCSHKFHLDCVLPWLA 152
           +KQ + KL  S K + D   P LA
Sbjct: 18  EKQALKKLQASLKLYADDSAPALA 41

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.6
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.58
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.55
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.54
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.54
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.51
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.49
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.45
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.44
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.43
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.4
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.4
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.4
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.4
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.39
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.35
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.35
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.35
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.34
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.33
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.33
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.33
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.32
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.3
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.3
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.28
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.28
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.28
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.27
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.25
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.25
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.25
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.25
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.24
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.23
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.23
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.21
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.17
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.16
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.15
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.15
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.15
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.14
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.12
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.1
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.09
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.08
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.06
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.04
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.03
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.02
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.02
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.99
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.98
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.96
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.96
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.94
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.9
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.86
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.86
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.79
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.74
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.71
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.71
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.67
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.65
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.64
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.48
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.48
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.39
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	98.07
3nw0_A	238	Non-structural maintenance of chromosomes element	97.89
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	94.97
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	94.29
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	92.93
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	92.86
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	90.26
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	88.01
1we9_A	64	PHD finger family protein; structural genomics, PH	87.08
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	86.46
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	86.06
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	84.74
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	83.53
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	83.26
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	82.32
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	81.68
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	81.09
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	80.92

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=4.2e-16  Score=103.87  Aligned_cols=55  Identities=38%  Similarity=0.841  Sum_probs=49.3

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccCC
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLVS  167 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~s  167 (167)
                      ...++..|+||++.|..++.+..++|+|.||..||..|+..+.+||+||..+.++
T Consensus        19 ~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             ccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            3446778999999999888888899999999999999999999999999998764

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.58  E-value=1.3e-15  Score=105.53  Aligned_cols=71  Identities=21%  Similarity=0.452  Sum_probs=56.0

Q ss_pred             ccccchhcCcCccccc---cccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515           96 CLGSKLFGSRWPLKLR---RCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus        96 g~~~~~~~s~~~~~~~---~~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      +++++.+.+.+.....   ....++..|+||++.|..++.+..++|+|.||..||..|+..+.+||+||..+.+
T Consensus        16 ~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           16 PASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             CCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            5555555554443322   1234567899999999988888889999999999999999999999999999875

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.55  E-value=1.8e-15  Score=94.69  Aligned_cols=50  Identities=40%  Similarity=0.916  Sum_probs=45.8

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|+||++.|..++....++ |+|.||..||..|+..+.+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            4568999999999888888898 9999999999999999999999999875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=3.9e-15  Score=98.67  Aligned_cols=52  Identities=37%  Similarity=0.998  Sum_probs=47.2

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ...+..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||.+|.
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~   63 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVL   63 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCS
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccc
Confidence            3456789999999998888888899999999999999999999999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.54  E-value=5.2e-15  Score=96.80  Aligned_cols=52  Identities=31%  Similarity=0.841  Sum_probs=46.7

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ...+..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||..|.
T Consensus        11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   62 (69)
T 2kiz_A           11 EDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIE   62 (69)
T ss_dssp             TTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSC
T ss_pred             CCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCcccc
Confidence            3456789999999988778888999999999999999999999999999875

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.51  E-value=9.4e-15  Score=97.75  Aligned_cols=53  Identities=34%  Similarity=0.855  Sum_probs=47.3

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ..++..|+||++.|..+..+..++|+|.||..||..|+..+.+||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~   64 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTG   64 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCC
Confidence            34567899999999988888889999999999999999999999999998753

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-14  Score=98.08  Aligned_cols=51  Identities=24%  Similarity=0.663  Sum_probs=42.5

Q ss_pred             ccccccceecccccc-----------CCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQD-----------KQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~-----------~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|..           ++.++.++ |+|.||..||.+|+..+.+||+||.++.
T Consensus        13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   75 (81)
T 2ecl_A           13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWV   75 (81)
T ss_dssp             CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcc
Confidence            456789999998864           33455665 9999999999999999999999999875

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.45  E-value=4e-14  Score=88.38  Aligned_cols=50  Identities=28%  Similarity=0.595  Sum_probs=43.1

Q ss_pred             cccccceeccccccC-CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDK-QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~-~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|+||++.|.+. +....++|+|.||..||..|+....+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            456899999998654 34677889999999999999999999999999874

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.44  E-value=4.5e-14  Score=92.49  Aligned_cols=52  Identities=27%  Similarity=0.667  Sum_probs=44.9

Q ss_pred             ccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      .++..|+||++.+.++    +..+.++|+|.||..||..|+..+.+||+||..+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccCh
Confidence            4567899999998764    455778999999999999999999999999998764

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=7.8e-14  Score=90.61  Aligned_cols=53  Identities=26%  Similarity=0.649  Sum_probs=45.1

Q ss_pred             cccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ..+...|+||++.|.++    ..++.++|+|.||..||..|+..+.+||+||.+|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            34567899999998864    344778999999999999999999999999998854

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=88.36  Aligned_cols=51  Identities=25%  Similarity=0.673  Sum_probs=43.8

Q ss_pred             cccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ++..|+||++.+.++    +....++|+|.||..||..|+..+.+||+||.++..
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   56 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   56 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTT
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCc
Confidence            356899999998764    445778999999999999999999999999998753

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.40  E-value=1.6e-13  Score=97.99  Aligned_cols=52  Identities=25%  Similarity=0.557  Sum_probs=43.7

Q ss_pred             cccccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      +.++..|+||++.|...-               .++.++|+|.||..||..|+..+.+||+||..+.
T Consensus        34 d~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           34 DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             SSCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence            346788999999988541               3566789999999999999999999999999853

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.40  E-value=1.9e-13  Score=97.62  Aligned_cols=50  Identities=30%  Similarity=0.584  Sum_probs=40.5

Q ss_pred             cccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHh-----cCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLA-----AHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~v~  165 (167)
                      .+..|+||++.|..+.               .+..++|+|.||..||..|+.     .+.+||+||..+.
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            3568999999997642               233678999999999999994     4669999998774

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=1.2e-13  Score=90.97  Aligned_cols=48  Identities=25%  Similarity=0.495  Sum_probs=43.1

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.+.++   +.++|+|.||..||..|+.....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (71)
T 2d8t_A           13 LTVPECAICLQTCVHP---VSLPCKHVFCYLCVKGASWLGKRCALCRQEIP   60 (71)
T ss_dssp             SSCCBCSSSSSBCSSE---EEETTTEEEEHHHHHHCTTCSSBCSSSCCBCC
T ss_pred             CCCCCCccCCcccCCC---EEccCCCHHHHHHHHHHHHCCCcCcCcCchhC
Confidence            4567899999998776   78899999999999999998899999999874

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=3e-13  Score=89.25  Aligned_cols=50  Identities=24%  Similarity=0.540  Sum_probs=43.7

Q ss_pred             ccccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ...++..|+||++.+.++   +.+ +|+|.||..||..|+..+..||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDA---TTITECLHTFCKSCIVRHFYYSNRCPKCNIVVH   61 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSC---EECSSSCCEECHHHHHHHHHHCSSCTTTCCCCC
T ss_pred             hcCCCCCCCCCChHHHCc---CEECCCCCHHHHHHHHHHHHcCCcCCCcCcccC
Confidence            334567899999999876   666 89999999999999999999999999875

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=4.6e-13  Score=90.24  Aligned_cols=49  Identities=29%  Similarity=0.622  Sum_probs=43.2

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ......|+||++.|.++   +.++|+|.||..||..|+.....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           12 EEIPFRCFICRQAFQNP---VVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCCSBCSSSCSBCCSE---EECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCCcCCCchhcCe---eEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34467899999999876   77899999999999999999999999999863

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.35  E-value=3.2e-13  Score=87.85  Aligned_cols=48  Identities=33%  Similarity=0.880  Sum_probs=42.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+..|+||++.+.++  ...++|+|.||..||..|+..+.+||+||..+.
T Consensus         4 ~~~~C~IC~~~~~~~--~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCC--cEecCCCCeeHHHHHHHHHhCcCcCcCCChhhH
Confidence            456899999998754  367899999999999999999999999998874

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.35  E-value=2.2e-13  Score=100.85  Aligned_cols=47  Identities=30%  Similarity=0.772  Sum_probs=42.7

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|+||++.|.++   +.++|||.||..||..|+..+.+||+||.++.
T Consensus        52 ~~~~C~iC~~~~~~~---~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   98 (138)
T 4ayc_A           52 NELQCIICSEYFIEA---VTLNCAHSFCSYCINEWMKRKIECPICRKDIK   98 (138)
T ss_dssp             HHSBCTTTCSBCSSE---EEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred             ccCCCcccCcccCCc---eECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence            456799999999877   78999999999999999999999999999874

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=88.79  Aligned_cols=53  Identities=26%  Similarity=0.597  Sum_probs=44.4

Q ss_pred             ccccccccceeccccccCCc-eEEecCCCcccHHhHHHHHhcC---CCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQ-IAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~-~~~lpC~H~Fh~~Ci~~Wl~~~---~~CP~CR~~v~  165 (167)
                      ...+...|+||++.|.+.+. .+.++|+|.||..||..|+...   ..||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            33456789999999987543 5788999999999999999876   79999999764

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8e-13  Score=85.70  Aligned_cols=50  Identities=20%  Similarity=0.548  Sum_probs=42.5

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~~  166 (167)
                      ..++..|+||++.+.++   +.++|+|.||..||..|+. ....||+||..+..
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSP---KQTECGHRFCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             CCCCEECTTTCCEESSC---CCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             CCcCCCCCCCChHhcCe---eECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            34567899999999877   5589999999999999994 56799999998753

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.33  E-value=9.5e-13  Score=87.45  Aligned_cols=49  Identities=18%  Similarity=0.522  Sum_probs=42.7

Q ss_pred             cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH--PHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~  165 (167)
                      ..++..|+||++.|.++   +.++ |+|.||..||..|+..+  ..||+||.++.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   63 (74)
T 2yur_A           12 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   63 (74)
T ss_dssp             SCGGGSCSSSCCCCTTC---EECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred             CCCCCCCcCCChHHhCC---eEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence            34567899999999887   7899 99999999999999865  69999999764

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=8e-13  Score=86.96  Aligned_cols=51  Identities=29%  Similarity=0.656  Sum_probs=43.1

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCcccCccC
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYCRTPVLV  166 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~CR~~v~~  166 (167)
                      ...++..|+||++.+.++   +.++|+|.||..||..|+.   ....||+||..+..
T Consensus        16 ~~~~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSE---EECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCe---EEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            334567899999999876   7789999999999999996   45589999998864

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.32  E-value=3.5e-13  Score=88.21  Aligned_cols=48  Identities=31%  Similarity=0.832  Sum_probs=42.4

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.+.+    +.++|+|.||..||..|+.....||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   59 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMT   59 (70)
T ss_dssp             CCCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTT
T ss_pred             CCCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCccc
Confidence            3456789999999876    67899999999999999998999999998875

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1e-12  Score=89.30  Aligned_cols=52  Identities=23%  Similarity=0.636  Sum_probs=43.3

Q ss_pred             ccccccccceeccccccCCceEEecCC-----CcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCS-----HKFHLDCVLPWLAAH--PHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~-----H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~  165 (167)
                      ...++..|.||+++|..++.+ .+||.     |.||..||.+|+..+  .+||+||..+.
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~   69 (80)
T 2d8s_A           11 TPSSQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI   69 (80)
T ss_dssp             CCTTSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred             CCCCCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence            444567899999999876665 58996     999999999999765  49999999875

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.30  E-value=1.3e-12  Score=87.16  Aligned_cols=48  Identities=25%  Similarity=0.509  Sum_probs=42.8

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.++|||.||..||..|+.. ..+||+|+.++.
T Consensus         6 ~~~~~C~IC~~~~~~P---v~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~   54 (78)
T 1t1h_A            6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL   54 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred             cccCCCCCccccccCC---EEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence            4567899999999887   78899999999999999986 779999999875

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.28  E-value=2.9e-13  Score=98.34  Aligned_cols=53  Identities=25%  Similarity=0.540  Sum_probs=2.5

Q ss_pred             ccccccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+..++.|+||++.|..+.               .+..++|+|.||..||..|+..+.+||+||.++.
T Consensus        44 wd~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           44 WDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ECCCC---------------------------------------------------------------
T ss_pred             ecCCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence            3345789999999997531               2233579999999999999999999999999853

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.28  E-value=1e-12  Score=92.22  Aligned_cols=50  Identities=28%  Similarity=0.709  Sum_probs=43.4

Q ss_pred             ccccccccceeccccccCCceEE-ecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~-lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~  165 (167)
                      ...++..|+||++.|.++   +. ++|||.||..||..|+... ..||+||.++.
T Consensus        18 ~l~~~~~C~IC~~~~~~p---~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDA---RLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ   69 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCCCCCCCccCCccccCc---cccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence            334577899999999876   67 8899999999999999887 69999999874

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.28  E-value=2.6e-12  Score=86.33  Aligned_cols=49  Identities=27%  Similarity=0.656  Sum_probs=42.9

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA------HPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.|.++   +.++|+|.||..||..|+..      ...||+||..+.
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecw_A           16 IKEEVTCPICLELLKEP---VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP   70 (85)
T ss_dssp             CCTTTSCTTTCSCCSSC---EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred             CccCCCCcCCChhhCcc---eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence            34567899999999877   68899999999999999987      669999999875

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=3.4e-12  Score=81.85  Aligned_cols=45  Identities=29%  Similarity=0.706  Sum_probs=38.8

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYC  160 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C  160 (167)
                      ...++..|+||++.+.++   +.++|+|.||..||..|+.   ....||+|
T Consensus        16 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKP---VTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSC---EECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             hCccCCCCCcCCchhCCe---EEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            344577899999999877   7789999999999999998   45589998

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.25  E-value=8.8e-13  Score=87.93  Aligned_cols=49  Identities=22%  Similarity=0.527  Sum_probs=42.4

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-------CCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-------HPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-------~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.|.++   +.++|+|.||..||..|+..       ...||+||..+.
T Consensus         9 ~~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~   64 (79)
T 2egp_A            9 VQEEVTCPICLELLTEP---LSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS   64 (79)
T ss_dssp             CCCCCEETTTTEECSSC---CCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred             cccCCCCcCCCcccCCe---eECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence            34567899999999877   66899999999999999976       568999999875

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.25  E-value=3.5e-12  Score=90.36  Aligned_cols=49  Identities=27%  Similarity=0.650  Sum_probs=43.3

Q ss_pred             cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.|.++   +.+ +|||.||..||..|+..+..||+||..+.
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   61 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDA---TTIIECLHSFCKTCIVRYLETSKYCPICDVQVH   61 (108)
T ss_dssp             HGGGTBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred             cCCcCCCccCChHHhCc---CEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence            34577899999999876   676 89999999999999999999999998875

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.25  E-value=4.5e-12  Score=87.10  Aligned_cols=48  Identities=19%  Similarity=0.520  Sum_probs=42.0

Q ss_pred             cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC--CCCCCcccCc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH--PHCPYCRTPV  164 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v  164 (167)
                      ..++..|+||++.|.++   +.++ |||.||..||..|+...  ..||+||..+
T Consensus        10 ~~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~   60 (92)
T 3ztg_A           10 IPDELLCLICKDIMTDA---VVIPCCGNSYCDECIRTALLESDEHTCPTCHQND   60 (92)
T ss_dssp             CCTTTEETTTTEECSSC---EECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSS
T ss_pred             CCcCCCCCCCChhhcCc---eECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcC
Confidence            34567899999999987   8899 99999999999999754  5999999986

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.25  E-value=2.5e-12  Score=89.70  Aligned_cols=48  Identities=27%  Similarity=0.622  Sum_probs=42.6

Q ss_pred             ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.+ +|||.||..||..|+..+..||+||..+.
T Consensus        20 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   68 (99)
T 2y43_A           20 DDLLRCGICFEYFNIA---MIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVT   68 (99)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCcccCChhhCCc---CEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCC
Confidence            4567899999999876   666 89999999999999998899999998775

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=4.2e-12  Score=85.25  Aligned_cols=49  Identities=27%  Similarity=0.601  Sum_probs=42.7

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc------CCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA------HPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~------~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.+.++   +.++|+|.||..||..|+..      ...||+||..+.
T Consensus        16 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~   70 (85)
T 2ecv_A           16 VKEEVTCPICLELLTQP---LSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ   70 (85)
T ss_dssp             CCCCCCCTTTCSCCSSC---BCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred             ccCCCCCCCCCcccCCc---eeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence            34567899999999876   66899999999999999987      679999999875

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.23  E-value=3.3e-12  Score=92.59  Aligned_cols=49  Identities=24%  Similarity=0.396  Sum_probs=42.5

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~~  166 (167)
                      .++..|+||++.|.++   +.++|||.||..||..|+.... .||+||..+..
T Consensus        50 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           50 EETFQCICCQELVFRP---ITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCCCCcCChHHcCc---EEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            4567899999999877   7889999999999999998554 99999998753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.23  E-value=3.9e-12  Score=91.99  Aligned_cols=52  Identities=27%  Similarity=0.667  Sum_probs=44.8

Q ss_pred             ccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      .++..|+||++.|.++    ...+.++|||.||..||..|+..+.+||+||..+..
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   60 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   60 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTT
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcc
Confidence            3467899999999765    455788999999999999999999999999998753

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=5.6e-12  Score=79.19  Aligned_cols=44  Identities=32%  Similarity=0.813  Sum_probs=37.4

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHh---cCCCCCCc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA---AHPHCPYC  160 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~---~~~~CP~C  160 (167)
                      ..++..|+||++.+.++   +.++|+|.||..||..|+.   ....||+|
T Consensus        12 ~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           12 LQVEASCSVCLEYLKEP---VIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCCCCBCSSSCCBCSSC---CCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             cccCCCCccCCcccCcc---EeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            34567899999999887   6689999999999999954   45689998

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=1.7e-11  Score=79.16  Aligned_cols=50  Identities=22%  Similarity=0.485  Sum_probs=40.5

Q ss_pred             ccccceecc-ccccCCce-EEecCCCcccHHhHHHHHhc-CCCCCCcccCccC
Q 044515          117 RKICSVCLE-GFQDKQQI-AKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVLV  166 (167)
Q Consensus       117 ~~~C~IC~e-~~~~~~~~-~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~~  166 (167)
                      +..|+||++ .+.++... +.++|||.||..||..|+.. ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            567999999 77776533 45789999999999999764 4689999998753

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.16  E-value=1.1e-11  Score=93.99  Aligned_cols=48  Identities=27%  Similarity=0.817  Sum_probs=41.7

Q ss_pred             ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.+ +|+|.||..||..|+.. ...||+||..+.
T Consensus        52 ~~~~~C~IC~~~~~~p---~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~  101 (165)
T 2ckl_B           52 HSELMCPICLDMLKNT---MTTKECLHRFCADCIITALRSGNKECPTCRKKLV  101 (165)
T ss_dssp             HHHHBCTTTSSBCSSE---EEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             CCCCCCcccChHhhCc---CEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCC
Confidence            3567899999999876   666 89999999999999987 778999999874

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.15  E-value=1e-11  Score=87.86  Aligned_cols=47  Identities=28%  Similarity=0.665  Sum_probs=41.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC---CCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP---HCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~v~  165 (167)
                      +...|+||++.+.++   +.++|||.||..||..|+....   .||+||..+.
T Consensus        20 ~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (112)
T 1jm7_A           20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (112)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CCCCCcccChhhcCe---EECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence            456899999999877   6689999999999999998654   8999999875

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.15  E-value=1.8e-11  Score=88.17  Aligned_cols=50  Identities=20%  Similarity=0.561  Sum_probs=43.4

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~  165 (167)
                      ...++..|+||++.+.++   +.++|+|.||..||..|+.... .||+||.++.
T Consensus        14 ~~~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (118)
T 3hct_A           14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCcCChhhcCe---EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcC
Confidence            445577899999999877   7789999999999999998765 9999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.15  E-value=5.1e-12  Score=90.38  Aligned_cols=49  Identities=24%  Similarity=0.617  Sum_probs=42.5

Q ss_pred             cccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      ..++..|+||++.|.++   +.++|||.||..||..|+.. ...||+||..+.
T Consensus        12 ~~~~~~C~iC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   61 (115)
T 3l11_A           12 SLSECQCGICMEILVEP---VTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS   61 (115)
T ss_dssp             CHHHHBCTTTCSBCSSC---EECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred             CCCCCCCccCCcccCce---eEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence            34567899999999877   78899999999999999976 668999999864

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.14  E-value=1.7e-11  Score=92.22  Aligned_cols=49  Identities=24%  Similarity=0.476  Sum_probs=42.6

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v~~  166 (167)
                      .++..|+||++.|.++   +.++|+|.||..||..|+.... .||+||..+..
T Consensus        76 ~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~  125 (150)
T 1z6u_A           76 EQSFMCVCCQELVYQP---VTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ  125 (150)
T ss_dssp             HHHTBCTTTSSBCSSE---EECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             ccCCEeecCChhhcCC---EEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence            3467899999999877   7799999999999999998664 89999998753

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.12  E-value=2.5e-11  Score=81.32  Aligned_cols=48  Identities=29%  Similarity=0.686  Sum_probs=40.0

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcC--CCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH--PHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--~~CP~CR~~v~  165 (167)
                      ....|+||++.|..+..  -..|+|.||..||.+||+.+  .+||+|+..+.
T Consensus        14 ~i~~C~IC~~~i~~g~~--C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQS--CETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             SSCBCSSSCCBCSSSEE--CSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CCCcCcchhhHcccCCc--cCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            45689999999987632  22699999999999999877  79999998764

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.10  E-value=3e-11  Score=86.43  Aligned_cols=48  Identities=31%  Similarity=0.647  Sum_probs=42.3

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      .++..|+||++.+.++   +.++|||.||..||..|+.. ...||+||.++.
T Consensus        21 ~~~~~C~IC~~~~~~p---~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   69 (116)
T 1rmd_A           21 VKSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (116)
T ss_dssp             HHHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCCCCCCCCCcHhcCc---EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCC
Confidence            3467899999999877   77899999999999999987 679999999875

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.09  E-value=5.7e-11  Score=81.19  Aligned_cols=48  Identities=15%  Similarity=0.124  Sum_probs=43.7

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus        12 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   59 (85)
T 2kr4_A           12 PDEFRDPLMDTLMTDP---VRLPSGTVMDRSIILRHLLNSPTDPFNRQMLT   59 (85)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             chheECcccCchhcCC---eECCCCCEECHHHHHHHHhcCCCCCCCcCCCC
Confidence            3467899999999998   88999999999999999998899999998764

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.08  E-value=4e-11  Score=86.61  Aligned_cols=52  Identities=27%  Similarity=0.674  Sum_probs=44.3

Q ss_pred             cccccccceeccccccC----CceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDK----QQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~----~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..+...|+||++.|..+    ...+.++|+|.||..||..|+....+||+||..+.
T Consensus        69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~  124 (133)
T 4ap4_A           69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN  124 (133)
T ss_dssp             SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence            34567899999998763    34467889999999999999999999999999875

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.06  E-value=6.8e-11  Score=83.31  Aligned_cols=48  Identities=15%  Similarity=0.139  Sum_probs=44.0

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.++|||.|+..||..|+..+.+||+|+.++.
T Consensus        27 p~~~~CpI~~~~m~dP---V~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~   74 (100)
T 2kre_A           27 PDEFRDPLMDTLMTDP---VRLPSGTIMDRSIILRHLLNSPTDPFNRQTLT   74 (100)
T ss_dssp             STTTBCTTTCSBCSSE---EEETTTEEEEHHHHHHHTTSCSBCSSSCCBCC
T ss_pred             cHhhCCcCccCcccCC---eECCCCCEEchHHHHHHHHcCCCCCCCCCCCC
Confidence            3567899999999999   88999999999999999998889999999875

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.04  E-value=1.9e-10  Score=80.74  Aligned_cols=48  Identities=15%  Similarity=0.144  Sum_probs=43.8

Q ss_pred             ccccccceeccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCS-HKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.++|| |.|+..||..|+..+.+||+|+.++.
T Consensus        20 p~~~~CpI~~~~m~dP---V~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~   68 (98)
T 1wgm_A           20 CDEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLT   68 (98)
T ss_dssp             CTTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCC
T ss_pred             cHhcCCcCccccccCC---eECCCCCeEECHHHHHHHHHhCCCCCCCCCCCC
Confidence            3567899999999999   889999 99999999999998889999999875

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.03  E-value=9.9e-11  Score=75.87  Aligned_cols=47  Identities=19%  Similarity=0.480  Sum_probs=40.6

Q ss_pred             cccccceeccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKL--SCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|.||++...+.   +.+  ||||. ||..|+..|+..+..||+||.++.
T Consensus         7 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPKNG---CIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCSCE---EEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCCCE---EEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            466899999987655   555  99999 899999999998899999999874

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.02  E-value=7.5e-11  Score=87.88  Aligned_cols=49  Identities=20%  Similarity=0.529  Sum_probs=42.6

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC-CCCCcccCc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP-HCPYCRTPV  164 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~-~CP~CR~~v  164 (167)
                      ...++..|+||++.+.++   +.++|||.||..||..|+.... .||+||.++
T Consensus        27 ~l~~~~~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRP---FQAQCGHRYCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             cCCcCcCCCCCChhhcCc---EECCCCCccCHHHHHHHHhcCCCCCCCCCCcc
Confidence            345677899999999888   7789999999999999998665 899999865

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.02  E-value=1.3e-10  Score=78.36  Aligned_cols=52  Identities=19%  Similarity=0.410  Sum_probs=40.0

Q ss_pred             cccccccceeccccccCCceEEe--cCCCcccHHhHHHHHh-cCCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKL--SCSHKFHLDCVLPWLA-AHPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~l--pC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~~  166 (167)
                      ..++..|+||++.+...+. ..+  +|||.||..|+..++. ....||.||.++..
T Consensus         8 ~~~~~~CpICle~~~~~d~-~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~   62 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDI-NFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   62 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTT-TCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred             cccCCcCCccCccCccccc-cccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence            3456789999998864322 334  4999999999999875 35689999998753

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.99  E-value=1.7e-10  Score=74.55  Aligned_cols=47  Identities=23%  Similarity=0.466  Sum_probs=40.1

Q ss_pred             cccccceeccccccCCceEEe--cCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKL--SCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~l--pC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+..|.||++...+.   ..+  ||||. ||..|+..|...+..||+||.+|.
T Consensus         6 ~~~~C~IC~~~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDG---NIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCE---EEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCe---EEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            456899999986655   455  99998 999999999988889999999874

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.98  E-value=5.3e-11  Score=75.05  Aligned_cols=45  Identities=22%  Similarity=0.427  Sum_probs=38.9

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.++|+|.||..||..|   ...||+||..+.
T Consensus         4 ~~~~~C~IC~~~~~~p---~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCe---EEcCCCCcccHHHHccC---CCCCCcCCcEee
Confidence            4567899999999887   77899999999999883   668999999875

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.96  E-value=3e-10  Score=97.31  Aligned_cols=47  Identities=26%  Similarity=0.726  Sum_probs=41.5

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~  165 (167)
                      ....|+||++.+.++   +.+||||.||..|+..|+. ....||+||.++.
T Consensus       331 ~~~~C~ICle~~~~p---v~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~  378 (389)
T 2y1n_A          331 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK  378 (389)
T ss_dssp             SSSBCTTTSSSBCCE---EEETTCCEECHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCcCCCCe---EEeCCCChhhHHHHHHHHhcCCCCCCCCCCccC
Confidence            346899999998766   8899999999999999998 6789999999874

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=7e-11  Score=84.87  Aligned_cols=46  Identities=30%  Similarity=0.638  Sum_probs=40.9

Q ss_pred             ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.|.++   +.+ +|||.||..||..|+.  ..||+||..+.
T Consensus        20 ~~~~~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hhCCCCCCCChHhhCc---cEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence            4577899999999887   777 8999999999999987  88999998874

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.94  E-value=1.6e-10  Score=76.75  Aligned_cols=44  Identities=23%  Similarity=0.565  Sum_probs=38.6

Q ss_pred             ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.+.+.   +.+||+|. ||..|+..|    ..||+||.++.
T Consensus        22 ~~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   66 (74)
T 4ic3_A           22 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEAV----DKCPMCYTVIT   66 (74)
T ss_dssp             HHHTBCTTTSSSBCCE---EEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred             ccCCCCCCCCCCCCCE---EEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence            3467899999998776   88899999 999999998    88999999874

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.90  E-value=5.8e-10  Score=84.70  Aligned_cols=50  Identities=20%  Similarity=0.564  Sum_probs=43.3

Q ss_pred             ccccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~  165 (167)
                      ...++..|+||++.|.++   +.++|||.||..||..|+... ..||+||..+.
T Consensus        14 ~~~~~~~C~IC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~   64 (170)
T 3hcs_A           14 PLESKYECPICLMALREA---VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILL   64 (170)
T ss_dssp             CCCGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCC
T ss_pred             CCCCCCCCCCCChhhcCc---EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcc
Confidence            445678999999999887   778999999999999999764 49999998875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.86  E-value=8.8e-10  Score=88.65  Aligned_cols=48  Identities=10%  Similarity=0.099  Sum_probs=42.4

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~  165 (167)
                      .....|+||++.|.++   ++++|||+||..||..|+..+ .+||+|+.++.
T Consensus       206 ~~~~~c~i~~~~~~dP---v~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~  254 (281)
T 2c2l_A          206 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT  254 (281)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CcccCCcCcCCHhcCC---eECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence            3567899999999998   889999999999999999864 45999999875

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.86  E-value=1e-09  Score=76.15  Aligned_cols=45  Identities=20%  Similarity=0.547  Sum_probs=39.2

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC------CCCCC--cccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH------PHCPY--CRTP  163 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~------~~CP~--CR~~  163 (167)
                      ++..|+||++.|.++   +.++ |||.|+..||..|+..+      .+||+  |+..
T Consensus         6 ~~~~CPI~~~~~~dP---V~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            6 SGFTCPITKEEMKKP---VKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SCCBCTTTCSBCSSE---EEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             cEeECcCcCchhcCC---EEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            466899999999988   8886 99999999999999754      48999  9855

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.79  E-value=5.7e-10  Score=94.12  Aligned_cols=52  Identities=21%  Similarity=0.619  Sum_probs=40.1

Q ss_pred             ccccccceeccccccCCceE-----EecCCCcccHHhHHHHHhcC-----------CCCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQQIA-----KLSCSHKFHLDCVLPWLAAH-----------PHCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~-----~lpC~H~Fh~~Ci~~Wl~~~-----------~~CP~CR~~v~~  166 (167)
                      +...+|+||++.+.+...+.     ...|+|.||..||.+|+...           .+||+|+.+|..
T Consensus       306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            45678999999988732221     23599999999999999742           379999998764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.74  E-value=1.9e-09  Score=71.57  Aligned_cols=44  Identities=23%  Similarity=0.569  Sum_probs=37.0

Q ss_pred             ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.+.+.   +.+||+|. ||..|+..    ...||+||.++.
T Consensus        23 ~~~~~C~IC~~~~~~~---~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~   67 (75)
T 2ecg_A           23 QEEKLCKICMDRNIAI---VFVPCGHLVTCKQCAEA----VDKCPMCYTVIT   67 (75)
T ss_dssp             HHHHSCSSSCSSCCCB---CCSSSCCCCBCHHHHHH----CSBCTTTCCBCC
T ss_pred             CCCCCCCcCCCCCCCE---EEecCCCHHHHHHHhhC----CCCCccCCceec
Confidence            3466899999998776   77899999 99999964    478999998875

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.71  E-value=6.9e-09  Score=67.96  Aligned_cols=46  Identities=33%  Similarity=0.614  Sum_probs=38.1

Q ss_pred             ccccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ...++..|.||++...+.   +.+||+|. ||..|+..    ...||+||..|.
T Consensus        11 ~~~~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~   57 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNW---VLLPCRHTCLCDGCVKY----FQQCPMCRQFVQ   57 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCC---EETTTTBCCSCTTHHHH----CSSCTTTCCCCC
T ss_pred             cCCCCCCCCCcCcCCCCE---EEECCCChhhhHHHHhc----CCCCCCCCcchh
Confidence            334567899999987665   88999999 99999884    579999999875

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.71  E-value=6.9e-09  Score=80.31  Aligned_cols=48  Identities=10%  Similarity=0.089  Sum_probs=42.4

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~  165 (167)
                      .+...|+||++.|.++   +.++|||+|+..||..|+..+ .+||+|+.++.
T Consensus       104 p~~f~CPI~~elm~DP---V~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~  152 (179)
T 2f42_A          104 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT  152 (179)
T ss_dssp             CGGGBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cHhhcccCccccCCCC---eECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence            4567899999999988   889999999999999999764 47999998874

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.67  E-value=1.2e-08  Score=65.45  Aligned_cols=50  Identities=20%  Similarity=0.537  Sum_probs=38.3

Q ss_pred             cccccccceeccccccCCceEEecCC--C---cccHHhHHHHHhc--CCCCCCcccCccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLSCS--H---KFHLDCVLPWLAA--HPHCPYCRTPVLV  166 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lpC~--H---~Fh~~Ci~~Wl~~--~~~CP~CR~~v~~  166 (167)
                      +++...|.||+++..+  . ..+||.  +   .||..||..|+..  +.+||+|+..+..
T Consensus         3 ~~~~~~CrIC~~~~~~--~-l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            3 DEDVPVCWICNEELGN--E-RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             TCSCCEETTTTEECSC--C-CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCEeEEeecCCCC--c-eecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            3456789999998432  3 358854  4   9999999999964  5789999998753

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.65  E-value=7.8e-09  Score=71.31  Aligned_cols=47  Identities=21%  Similarity=0.512  Sum_probs=37.6

Q ss_pred             ccccceeccccccCCceEEecCCCcccHHhHHHHHhc--------CCCCCC--cccC
Q 044515          117 RKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA--------HPHCPY--CRTP  163 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~--------~~~CP~--CR~~  163 (167)
                      ...|+||++.+..+..+...+|+|.||..|+..++..        ...||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            5579999999887654333479999999999999863        137999  9987

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.64  E-value=4.3e-09  Score=70.87  Aligned_cols=43  Identities=28%  Similarity=0.581  Sum_probs=36.8

Q ss_pred             cccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|.||++.+.+.   +.+||||. ||..|+..|    ..||+||.++.
T Consensus        17 ~~~~C~IC~~~~~~~---v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~   60 (79)
T 2yho_A           17 EAMLCMVCCEEEINS---TFCPCGHTVCCESCAAQL----QSCPVCRSRVE   60 (79)
T ss_dssp             HHTBCTTTSSSBCCE---EEETTCBCCBCHHHHTTC----SBCTTTCCBCC
T ss_pred             CCCEeEEeCcccCcE---EEECCCCHHHHHHHHHhc----CcCCCCCchhh
Confidence            456899999987765   88999999 999999876    39999999874

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.48  E-value=4.1e-08  Score=80.03  Aligned_cols=48  Identities=21%  Similarity=0.480  Sum_probs=40.7

Q ss_pred             ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcC--CCCCC--cccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAH--PHCPY--CRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~--~~CP~--CR~~v~  165 (167)
                      ..+..|+||++.|.++   +.. .|||+|+..||..|+..+  ..||+  |+..+.
T Consensus       179 ~~el~CPIcl~~f~DP---Vts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYEAP---LISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCSSE---EEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCcccCC---eeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            3567899999999988   664 899999999999999764  47999  998664

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.48  E-value=1.8e-08  Score=85.10  Aligned_cols=44  Identities=23%  Similarity=0.609  Sum_probs=38.8

Q ss_pred             ccccccceeccccccCCceEEecCCCc-ccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHK-FHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~-Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .++..|+||++.+.++   +.+||||. ||..|+..|    ..||+||.++.
T Consensus       293 ~~~~~C~IC~~~~~~~---v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~  337 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSV---VFIPCGHLVVCQECAPSL----RKCPICRGIIK  337 (345)
T ss_dssp             HTTCBCTTTSSSBCCE---EEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred             cCCCCCCccCCcCCce---EEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence            4567899999998776   88899999 999999987    78999999874

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.39  E-value=9.8e-08  Score=61.23  Aligned_cols=45  Identities=9%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             cccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          118 KICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       118 ~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..|+||++.+.++   +.+ +|||.|.+.||.+|+..+.+||+.+.++.
T Consensus         4 ~~CpIs~~~m~dP---V~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~   49 (61)
T 2bay_A            4 MLCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   49 (61)
T ss_dssp             CCCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             EEecCCCCCCCCC---EEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCC
Confidence            4699999999987   778 79999999999999988889999998774

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=98.07  E-value=2.5e-06  Score=59.81  Aligned_cols=45  Identities=27%  Similarity=0.574  Sum_probs=36.5

Q ss_pred             ccceeccccccCCceEEecCCCcccHHhHHHHHh-cCCCCCCcccCcc
Q 044515          119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLA-AHPHCPYCRTPVL  165 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~-~~~~CP~CR~~v~  165 (167)
                      .|.+|--.+..-  ...+||.|.||.+|+..|.+ ..++||.|+.+|.
T Consensus         3 fC~~C~~Pi~iy--gRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEE--EEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEE--eeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            477787776543  46789999999999999985 4679999999874

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.89  E-value=6.9e-06  Score=65.95  Aligned_cols=47  Identities=26%  Similarity=0.648  Sum_probs=39.1

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC--CCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP--HCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~--~CP~CR~~v~  165 (167)
                      ....|.||.+-+..+   ...+ |+|.||..|+..|+..+.  .||.|+....
T Consensus       179 ~i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~  228 (238)
T 3nw0_A          179 AVKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP  228 (238)
T ss_dssp             TCCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCC
T ss_pred             CCCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCC
Confidence            367899999998877   4444 999999999999997654  9999998754

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=94.97  E-value=0.014  Score=39.76  Aligned_cols=35  Identities=11%  Similarity=0.353  Sum_probs=25.4

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHH
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPW  150 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~W  150 (167)
                      ++..|.||.+.+..+....-+.|+|.||..|+..+
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~   36 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT   36 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence            35689999986433322223889999999999983

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=94.29  E-value=0.03  Score=35.97  Aligned_cols=46  Identities=28%  Similarity=0.694  Sum_probs=32.6

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~v~  165 (167)
                      ....|.||.+.   + .++.-. |...||..|+.+.+....    .||.|.....
T Consensus        11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~   61 (66)
T 2lri_C           11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT   61 (66)
T ss_dssp             TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred             CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence            35579999753   2 333333 999999999988776433    7999976543

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=92.93  E-value=0.085  Score=35.62  Aligned_cols=33  Identities=21%  Similarity=0.499  Sum_probs=24.0

Q ss_pred             cccccccceeccccccCCceEEec---CCCcccHHhHHHH
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS---CSHKFHLDCVLPW  150 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp---C~H~Fh~~Ci~~W  150 (167)
                      ...+..|.||--. ...   ..+|   |+-+||..|+.+-
T Consensus        12 ~~~D~~C~VC~~~-t~~---~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           12 VVNDEMCDVCEVW-TAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTTCCC-CSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCCcccCccccc-ccc---ceeccccccccccHhhcccc
Confidence            3467889998643 223   3455   8999999999996

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=90.26  E-value=0.14  Score=32.09  Aligned_cols=46  Identities=26%  Similarity=0.681  Sum_probs=31.5

Q ss_pred             cccccccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCcccC
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRTP  163 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~~  163 (167)
                      ...+..|.||...   + .++.-. |...||..|+..-+...    -.||.|...
T Consensus         8 ~~~~~~C~vC~~~---g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~   58 (61)
T 2l5u_A            8 TDHQDYCEVCQQG---G-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE   58 (61)
T ss_dssp             SCCCSSCTTTSCC---S-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred             CCCCCCCccCCCC---C-cEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence            3456789999874   2 333333 89999999998754322    279999653

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=88.01  E-value=0.14  Score=33.17  Aligned_cols=49  Identities=22%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             ccccccceeccccccCCceEEec-CCCcccHHhHHHHHhc----CCCCCCcccCc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAA----HPHCPYCRTPV  164 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~----~~~CP~CR~~v  164 (167)
                      .+...|.||..... +..++.-. |..-||..|+..-...    .-.||.|...+
T Consensus        16 ~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~   69 (75)
T 2k16_A           16 NQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKI   69 (75)
T ss_dssp             CEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHH
T ss_pred             CCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCch
Confidence            44567999987753 33334433 8999999999764432    34799997654

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=87.08  E-value=0.088  Score=33.06  Aligned_cols=49  Identities=24%  Similarity=0.462  Sum_probs=33.8

Q ss_pred             ccccccceeccccccCCceEEec-CCCcccHHhHHHHHh-----cCCCCCCcccC
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLA-----AHPHCPYCRTP  163 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~-----~~~~CP~CR~~  163 (167)
                      .+...|+||...+.+....+.-. |..=||..|+.--..     ....||.|+..
T Consensus         4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            45667999998876544444443 899999999864322     34579999653

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=86.46  E-value=0.09  Score=32.97  Aligned_cols=48  Identities=29%  Similarity=0.733  Sum_probs=31.8

Q ss_pred             cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcC----CCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAH----PHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~----~~CP~CR~~v~  165 (167)
                      +..+..|.||...   + .++.- .|...||..|+.+-+...    -.||.|.....
T Consensus         6 d~~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~   58 (61)
T 1mm2_A            6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPAL   58 (61)
T ss_dssp             CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCC
T ss_pred             cCCCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchh
Confidence            4456789999863   2 22222 389999999998644332    26999976543

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=86.06  E-value=0.27  Score=29.32  Aligned_cols=43  Identities=33%  Similarity=0.700  Sum_probs=28.0

Q ss_pred             ccceeccccccCCceEEec-CCCcccHHhHHHHHhcC----CCCCCccc
Q 044515          119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAH----PHCPYCRT  162 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~----~~CP~CR~  162 (167)
                      .|.||...-..+ .++.-. |...||..|+.+=+...    -.||.|..
T Consensus         2 ~C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCCC-CEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            488888753322 333333 99999999997644332    26999965

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=84.74  E-value=0.36  Score=32.32  Aligned_cols=37  Identities=27%  Similarity=0.523  Sum_probs=28.2

Q ss_pred             cccccceeccccccCCceEEec--CCCcccHHhHHHHHhc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS--CSHKFHLDCVLPWLAA  153 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~  153 (167)
                      ....|.+|.+.+++.. .+..|  =.|.||..|-...++.
T Consensus        14 a~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sIk~   52 (93)
T 2cs3_A           14 GPLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA   52 (93)
T ss_dssp             CSCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred             CeeEeecchhhhccCc-eeeCCCccCCeeeccccHHHHHh
Confidence            4567999999998763 23344  3799999999998864

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=83.53  E-value=0.75  Score=30.44  Aligned_cols=38  Identities=16%  Similarity=0.169  Sum_probs=28.2

Q ss_pred             ccccccccceeccccccCCceEEec-CCCcccHHhHHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPW  150 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~W  150 (167)
                      .+.+...|.+|...|..-..-.+-. ||++||..|....
T Consensus        17 pd~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~   55 (84)
T 1z2q_A           17 EDEDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR   55 (84)
T ss_dssp             CTTTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred             cCCCCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence            4455678999999998654434444 9999999997553

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=83.26  E-value=0.52  Score=31.06  Aligned_cols=37  Identities=19%  Similarity=0.363  Sum_probs=27.4

Q ss_pred             ccccccccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP  149 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~  149 (167)
                      .+.+...|.+|...|..-..-.+- .||.+||..|...
T Consensus        15 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~   52 (82)
T 2yw8_A           15 KDDEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN   52 (82)
T ss_dssp             CCCCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred             cCccCCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence            444566899999999865443444 4999999999754

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=82.32  E-value=0.93  Score=42.81  Aligned_cols=47  Identities=15%  Similarity=0.181  Sum_probs=41.2

Q ss_pred             cccccceeccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCS-HKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ++..|+|-++-+.++   +++|.| +.|-+.+|..|+..+.+||.=|.++.
T Consensus       890 ~~F~cPIs~~lM~DP---VilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~  937 (968)
T 3m62_A          890 DEFLDPLMYTIMKDP---VILPASKMNIDRSTIKAHLLSDSTDPFNRMPLK  937 (968)
T ss_dssp             GGGBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCC
T ss_pred             HHhCCcchhhHHhCC---eEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCC
Confidence            466799999999999   899987 68999999999998899998877664

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=81.68  E-value=0.81  Score=32.65  Aligned_cols=37  Identities=19%  Similarity=0.392  Sum_probs=27.3

Q ss_pred             ccccccccceeccccccCCceEEec-CCCcccHHhHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLP  149 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~  149 (167)
                      .+.+...|.+|...|..-..-.+-. ||++||..|...
T Consensus        65 ~d~~~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~  102 (125)
T 1joc_A           65 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK  102 (125)
T ss_dssp             CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred             cCCCCCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence            3445568999999998654434544 999999999654

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=81.09  E-value=0.96  Score=30.34  Aligned_cols=38  Identities=18%  Similarity=0.199  Sum_probs=27.4

Q ss_pred             ccccccccceeccccccCCceEEe-cCCCcccHHhHHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPW  150 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~W  150 (167)
                      .+.+...|.+|...|..-..-.+- .||++||..|....
T Consensus        16 ~d~~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~   54 (90)
T 3t7l_A           16 PDSEAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRK   54 (90)
T ss_dssp             CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred             ccccCCcCcCCCCcccchhhCccccCCCCEECCcccCCe
Confidence            334556899999998765433444 49999999997654

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=80.92  E-value=0.91  Score=29.96  Aligned_cols=37  Identities=16%  Similarity=0.276  Sum_probs=27.1

Q ss_pred             ccccccccceeccccccCCceEEe-cCCCcccHHhHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLP  149 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~  149 (167)
                      .+.+...|.+|...|..-..-.+- .||.+||..|...
T Consensus        10 pd~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~   47 (84)
T 1x4u_A           10 PTNNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCSF   47 (84)
T ss_dssp             SCCCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSCE
T ss_pred             cCCCCCcCcCcCCccccchhhhhhcCCCcEEChhhcCC
Confidence            445567899999999755433444 4999999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	167
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	2e-12
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	7e-10
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-07
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-05
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	3e-05
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	2e-04
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	2e-04
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	3e-04
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	3e-04
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-04
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	0.003

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 56.8 bits (137), Expect = 2e-12
 Identities = 21/48 (43%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 120 CSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVLV 166
           C+VCL   +D ++   L  C H FH +CV  WL +H  CP CR  V+V
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV 55

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 50.3 bits (120), Expect = 7e-10
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
           C +CLE   +      L C H F   C+  W+  +P CP C+ PV
Sbjct: 8   CPICLEDPSNYSMA--LPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (104), Expect = 2e-07
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 118 KICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPV 164
           ++C +C E  +D   +    C H     C+  W  +    CP+CR  +
Sbjct: 24  QLCKICAENDKD---VKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.7 bits (97), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 18/49 (36%)

Query: 115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTP 163
            C +  +       ++  +A   C+H FH  C+  WL     CP     
Sbjct: 34  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 82

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 6/46 (13%)

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPV 164
            C  C    +       L C H     C+         CP C+ P 
Sbjct: 8   RCQQCQAEAKC---PKLLPCLHTLCSGCLEAS---GMQCPICQAPW 47

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-05
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 3/48 (6%)

Query: 120 CSVCLEGFQDKQQIAKL--SCSHKFHLDCVLPWLAA-HPHCPYCRTPV 164
           C  C         +  +   C H     CV         +CP C TP+
Sbjct: 6   CPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 36.0 bits (82), Expect = 2e-04
 Identities = 9/49 (18%), Positives = 15/49 (30%), Gaps = 4/49 (8%)

Query: 119 ICSVCLEGFQD--KQQIAKLSCSHKFHLDCVLPWLAAHPH--CPYCRTP 163
           +C +C E   +   +           H  C+  WL    +  C  C   
Sbjct: 8   VCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 2e-04
 Identities = 10/47 (21%), Positives = 17/47 (36%), Gaps = 2/47 (4%)

Query: 120 CSVCLEGFQDKQQIAK-LSCSHKFHLDCVLPWL-AAHPHCPYCRTPV 164
           C +C+E  +         +C ++    C        +  CP CR P 
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY 49

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 3e-04
 Identities = 12/58 (20%), Positives = 16/58 (27%), Gaps = 5/58 (8%)

Query: 112 RCRSCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWL-----AAHPHCPYCRTPV 164
              +         +            CSH FHL C+L             CP C+T  
Sbjct: 35  LAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIY 92

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (83), Expect = 3e-04
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH---PHCPYCRTPV 164
           C +CLE  ++        C H F   C+L  L        CP C+  +
Sbjct: 24  CPICLELIKE---PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDI 68

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.3 bits (81), Expect = 5e-04
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 4/47 (8%)

Query: 119 ICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPV 164
            C +C     D     + SC H F   C+L  L     +CP CR P 
Sbjct: 25  SCQICEHILAD---PVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 10/52 (19%), Positives = 16/52 (30%), Gaps = 8/52 (15%)

Query: 120 CSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP--------HCPYCRTP 163
           C +CL  +  +Q      C   F   C+  ++             CP    P
Sbjct: 8   CKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.66
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.48
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.44
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.39
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.39
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.35
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.27
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.25
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.25
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.21
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	99.12
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.1
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.08
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.02
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.8
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.54
d1wila_	89	Hypothetical protein KIAA1045 {Human (Homo sapiens	93.28
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	91.99
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	91.59
d1mm2a_	61	Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606	85.84
d2cs3a1	80	Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [	85.69
d1z60a1	59	TFIIH p44 subunit cysteine-rich domain {Human (Hom	84.25
d1wema_	76	Death associated transcription factor 1, Datf1 (DI	82.66
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	82.2
d1wepa_	79	PHD finger protein 8 {Mouse (Mus musculus) [TaxId:	81.88
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	81.46

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.66  E-value=1.4e-17  Score=104.34  Aligned_cols=51  Identities=41%  Similarity=0.920  Sum_probs=46.1

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ++.+|+||+++|..++.+..++ |+|.||..||..|++.+.+||+||.+|+.
T Consensus         4 d~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~v   55 (55)
T d1iyma_           4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVVV   55 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSCC
T ss_pred             CCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeEC
Confidence            4567999999999988888876 99999999999999999999999999863

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.48  E-value=6.5e-15  Score=95.52  Aligned_cols=48  Identities=33%  Similarity=0.880  Sum_probs=41.6

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..+.|+||++.|.++  .+.++|+|.||..||..|++.+.+||+||.++.
T Consensus         4 ~~d~C~IC~~~~~~~--~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~   51 (68)
T d1chca_           4 VAERCPICLEDPSNY--SMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSC--EEETTTTEEESTTHHHHHHHHSCSTTTTCCCCC
T ss_pred             CCCCCccCCcCccCC--cEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchH
Confidence            345799999998754  456799999999999999999999999999874

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=3.1e-14  Score=96.69  Aligned_cols=51  Identities=25%  Similarity=0.570  Sum_probs=42.5

Q ss_pred             ccccccceeccccccCC---------------ceEEecCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQ---------------QIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~---------------~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      ..++.|+||++.+....               .+..++|+|.||..||..|+..+.+||+||+++.
T Consensus        19 ~~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          19 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCccc
Confidence            45667999999886532               3566789999999999999999999999999864

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.2e-13  Score=88.80  Aligned_cols=50  Identities=22%  Similarity=0.444  Sum_probs=39.7

Q ss_pred             cccccceeccccccC-C-ceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDK-Q-QIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~-~-~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      ++..|+||++.+..+ + ....++|+|.||..||..|+.. +..||+||.++.
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~   54 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR   54 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcc
Confidence            457899999986433 2 3455689999999999999965 558999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.5e-14  Score=86.98  Aligned_cols=48  Identities=21%  Similarity=0.423  Sum_probs=39.9

Q ss_pred             ccceeccccccCCce-EEecCCCcccHHhHHHHHhc-CCCCCCcccCccC
Q 044515          119 ICSVCLEGFQDKQQI-AKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVLV  166 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~-~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~~  166 (167)
                      +|+||+++|..++.. ..++|+|.||..||..|+.. +..||+||.++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            699999999766543 44579999999999999985 4579999998864

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=91.92  Aligned_cols=47  Identities=26%  Similarity=0.734  Sum_probs=40.7

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      ....|+||++.+.+.   +.++|||.||..||..|+.. .+.||+||..|.
T Consensus        22 ~~~~C~IC~~~~~~~---~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~   69 (79)
T d1fbva4          22 TFQLCKICAENDKDV---KIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIK   69 (79)
T ss_dssp             CTTBCTTTSSSBCCE---ECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCC
T ss_pred             CCCCCccCCCcCCCe---EEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCcc
Confidence            345799999998765   88999999999999999974 568999999885

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.3e-13  Score=95.92  Aligned_cols=50  Identities=30%  Similarity=0.559  Sum_probs=39.3

Q ss_pred             cccccceeccccccC---------------CceEEecCCCcccHHhHHHHHhcC-----CCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDK---------------QQIAKLSCSHKFHLDCVLPWLAAH-----PHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~---------------~~~~~lpC~H~Fh~~Ci~~Wl~~~-----~~CP~CR~~v~  165 (167)
                      .+..|+||++.|...               ..+..++|+|.||..||..|+...     .+||+||..+.
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            356799999998542               234567899999999999999753     37999998764

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.27  E-value=5.3e-13  Score=90.36  Aligned_cols=47  Identities=32%  Similarity=0.667  Sum_probs=41.4

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      +...|+||++.+.++   +.++|||.||..||..|++. ...||+||.++.
T Consensus        22 ~~l~C~IC~~~~~~p---v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~   69 (86)
T d1rmda2          22 KSISCQICEHILADP---VETSCKHLFCRICILRCLKVMGSYCPSCRYPCF   69 (86)
T ss_dssp             HHTBCTTTCSBCSSE---EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             cCcCCccCCcchhcc---eecCCCChhhHHHHHHHHhhCCCcCcccCCCCC
Confidence            456899999999877   88999999999999999975 458999999875

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=6.1e-13  Score=82.95  Aligned_cols=44  Identities=9%  Similarity=0.161  Sum_probs=40.2

Q ss_pred             ccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .|+||++.+.++   +.++ |||.||..||.+|+..+.+||+||.++.
T Consensus         2 ~C~Ic~~~~~~P---v~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~   46 (56)
T d2baya1           2 LCAISGKVPRRP---VLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLS   46 (56)
T ss_dssp             CCTTTCSCCSSE---EEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCC
T ss_pred             CCccCCchHHhc---CccCCCCCcccHHHHHHHHhhccCCCccCCcCC
Confidence            599999999887   7775 9999999999999999999999999875

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=7.7e-13  Score=91.85  Aligned_cols=47  Identities=28%  Similarity=0.665  Sum_probs=40.9

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCC---CCCCcccCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHP---HCPYCRTPVL  165 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~---~CP~CR~~v~  165 (167)
                      +...|+||++.|.++   +.++|||.||..||..|+....   .||+||.++.
T Consensus        20 ~~l~CpIC~~~~~~p---v~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          20 KILECPICLELIKEP---VSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HHTSCSSSCCCCSSC---CBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             cCcCCCccCchhCCe---EEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            456799999999887   6789999999999999997653   8999999875

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=5.1e-13  Score=83.49  Aligned_cols=45  Identities=22%  Similarity=0.461  Sum_probs=38.7

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      +...|+||++.|.++   +.++|+|.||..||..|   +..||+||.++..
T Consensus         5 ~~l~C~IC~~~~~~p---~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCP---KLLPCLHTLCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCC---SCSTTSCCSBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCC---EEecCCCHHhHHHHHcC---CCcCcCCCCcccC
Confidence            345899999999877   77899999999999765   6689999999864

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=99.12  E-value=1.1e-11  Score=77.96  Aligned_cols=49  Identities=18%  Similarity=0.442  Sum_probs=38.3

Q ss_pred             cccccccceeccccccCCceEEec-----CCCcccHHhHHHHHh--cCCCCCCcccCcc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS-----CSHKFHLDCVLPWLA--AHPHCPYCRTPVL  165 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp-----C~H~Fh~~Ci~~Wl~--~~~~CP~CR~~v~  165 (167)
                      +++...|.||++.+...   ...+     |+|.||..||..|+.  .+.+||+||+++.
T Consensus         3 ded~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           3 DEDVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             TCSCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            44567899999988755   2334     459999999999995  3558999999874

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.10  E-value=2.6e-11  Score=79.92  Aligned_cols=49  Identities=22%  Similarity=0.435  Sum_probs=42.8

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhcC-CCCCCcccCccC
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH-PHCPYCRTPVLV  166 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~-~~CP~CR~~v~~  166 (167)
                      .++..|+||++.|.++   +.++|||.||..||..|+..+ ..||.|+.++..
T Consensus         6 P~~l~CpIc~~~m~dP---V~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           6 PEYFRCPISLELMKDP---VIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             SSSSSCTTTSCCCSSE---EEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CccCCCcCcCchhhCc---eEccCCCcchHHHHHHHHHHCCCCCCcccccCCc
Confidence            3577899999999988   889999999999999999764 579999988753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.08  E-value=2.3e-11  Score=80.54  Aligned_cols=48  Identities=10%  Similarity=0.103  Sum_probs=42.2

Q ss_pred             ccccccceeccccccCCceEEecCCCcccHHhHHHHHhc-CCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAA-HPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~-~~~CP~CR~~v~  165 (167)
                      -++..|+||++.|.++   +.++|||.|+..||..|+.. ..+||.|+.++.
T Consensus         5 P~~l~CpIc~~l~~dP---v~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~   53 (80)
T d2c2la2           5 PDYLCGKISFELMREP---CITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT   53 (80)
T ss_dssp             CSTTBCTTTCSBCSSE---EECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred             CccccCcCcCchhhhh---cccCCcCeecHHHHHHHHhcCCccCCCcccccc
Confidence            3567899999999988   88999999999999999975 458999998874

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.2e-11  Score=84.72  Aligned_cols=46  Identities=30%  Similarity=0.638  Sum_probs=38.5

Q ss_pred             ccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhcCCCCCCcccCcc
Q 044515          115 SCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAAHPHCPYCRTPVL  165 (167)
Q Consensus       115 ~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~~~~CP~CR~~v~  165 (167)
                      .+...|+||++.|.++   +.+ +|||.||..||..|+.  ..||.||.++.
T Consensus        20 ~~~l~C~IC~~~~~~p---v~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~   66 (97)
T d1jm7b_          20 EKLLRCSRCTNILREP---VCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW   66 (97)
T ss_dssp             HHTTSCSSSCSCCSSC---BCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hhcCCCccCCchhhcC---ceeCCCCCchhHHHHHHHHh--ccccccCCcCc
Confidence            3456899999999887   555 7999999999999984  45999998764

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=1.3e-09  Score=74.84  Aligned_cols=48  Identities=15%  Similarity=0.154  Sum_probs=42.7

Q ss_pred             cccccceeccccccCCceEEecCC-CcccHHhHHHHHhcCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCS-HKFHLDCVLPWLAAHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~-H~Fh~~Ci~~Wl~~~~~CP~CR~~v~~  166 (167)
                      ++..|+||.+.|.++   ++++|+ |.|+..||..|+..+.+||+|+.++..
T Consensus        21 ~~f~CPI~~~lm~dP---V~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          21 DEFLDPIMSTLMCDP---VVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             TTTBCTTTCSBCSSE---EECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             HHhCCcCchhHHHHH---HhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            467899999999999   889865 589999999999999999999998753

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=7.8e-09  Score=69.68  Aligned_cols=46  Identities=20%  Similarity=0.424  Sum_probs=35.7

Q ss_pred             cccccceeccccccCCceEEecCCCcccHHhHHHHHhcC--------CCCCCcc
Q 044515          116 CRKICSVCLEGFQDKQQIAKLSCSHKFHLDCVLPWLAAH--------PHCPYCR  161 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lpC~H~Fh~~Ci~~Wl~~~--------~~CP~CR  161 (167)
                      ....|+||++++...+.+..++|+|.||..||..|+..+        -.||.|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~   57 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA   57 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTT
T ss_pred             CCCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCC
Confidence            345799999998766555556799999999999998631        1699864

>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: variant PHD-like domain
domain: Hypothetical protein KIAA1045
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.28  E-value=0.018  Score=37.10  Aligned_cols=33  Identities=24%  Similarity=0.626  Sum_probs=25.6

Q ss_pred             cccccccceeccccccCCceEEec---CCCcccHHhHHHH
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKLS---CSHKFHLDCVLPW  150 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~lp---C~H~Fh~~Ci~~W  150 (167)
                      ...+..|.|| +.|...   ..+|   |+.+||..|+..-
T Consensus        12 v~~D~mC~vC-~v~t~~---~l~pCRvCtRv~H~~CL~r~   47 (89)
T d1wila_          12 VVNDEMCDVC-EVWTAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCCSCCCTTT-CCCCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCcCcccccc-Cccccc---ceecceeecchhhHHHHHHh
Confidence            4457789999 666655   3456   7999999999986

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.99  E-value=0.0089  Score=36.29  Aligned_cols=51  Identities=22%  Similarity=0.378  Sum_probs=35.5

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHH---h--cCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWL---A--AHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl---~--~~~~CP~CR~~v~~  166 (167)
                      ....|.||.......+..+.-. |+.-||..|+..-.   .  ....||.|+..-.|
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~~~~p   61 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP   61 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcCcCCC
Confidence            3457999998876665545444 99999999985321   1  23489999776544

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.59  E-value=0.027  Score=32.46  Aligned_cols=43  Identities=35%  Similarity=0.797  Sum_probs=29.4

Q ss_pred             ccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCccc
Q 044515          119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRT  162 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~  162 (167)
                      .|.||...-... .++.-. |...||..|+.+-+....    .||.|+.
T Consensus         2 ~C~vC~~~~~~~-~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGEDD-KLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCCC-CEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            488887654333 334333 999999999988654322    6999975

>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Mi2-beta (CHD4)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.84  E-value=0.038  Score=33.10  Aligned_cols=47  Identities=28%  Similarity=0.738  Sum_probs=30.9

Q ss_pred             cccccccceeccccccCCceEEe-cCCCcccHHhHHHHHhc----CCCCCCcccCc
Q 044515          114 RSCRKICSVCLEGFQDKQQIAKL-SCSHKFHLDCVLPWLAA----HPHCPYCRTPV  164 (167)
Q Consensus       114 ~~~~~~C~IC~e~~~~~~~~~~l-pC~H~Fh~~Ci~~Wl~~----~~~CP~CR~~v  164 (167)
                      +..+..|.||.+.   + .++.- .|...||..|+...+..    .-.||.|+..-
T Consensus         6 d~~~~~C~~C~~~---g-~lv~Cd~C~~~~H~~C~~~~~~~~~~~~W~C~~C~~~~   57 (61)
T d1mm2a_           6 DHHMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             CSSCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             cCCcCCCcCCCCC---C-eEEEeCCCCccCchhhcCCCcCcCCCCcEECCCCcCcc
Confidence            3445679999853   3 22333 38999999998765442    23799997653

>d2cs3a1 g.44.1.3 (A:8-87) Protein c14orf4 (KIAA1865) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: Protein c14orf4 (KIAA1865)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.69  E-value=0.12  Score=32.23  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=27.5

Q ss_pred             ccccceeccccccCCceEEec--CCCcccHHhHHHHHhc
Q 044515          117 RKICSVCLEGFQDKQQIAKLS--CSHKFHLDCVLPWLAA  153 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lp--C~H~Fh~~Ci~~Wl~~  153 (167)
                      ...|.+|.+.+.+.. .+..|  =.|.||..|-...++.
T Consensus         8 ~l~CtlC~erLEdtH-FVQCPsv~~HkFCFpCsr~sik~   45 (80)
T d2cs3a1           8 PLCCTICHERLEDTH-FVQCPSVPSHKFCFPCSRESIKA   45 (80)
T ss_dssp             SCCCSSSCSCCSSTT-SEECSSCSSCEECHHHHHHHHHH
T ss_pred             ceeeeeehhhhcCCc-eEeCCCCcCCceeccccHHHHHh
Confidence            357999999988763 23334  3799999999998864

>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: TFIIH p44 subunit cysteine-rich domain
domain: TFIIH p44 subunit cysteine-rich domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.25  E-value=0.13  Score=30.77  Aligned_cols=43  Identities=23%  Similarity=0.570  Sum_probs=30.4

Q ss_pred             ccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCCCCCCc
Q 044515          117 RKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHPHCPYC  160 (167)
Q Consensus       117 ~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~~CP~C  160 (167)
                      ...|--|+..+.+... ..-+ |++.||.+|=.---+.-..||-|
T Consensus        15 ~~~C~gC~~~l~~~~~-y~C~~C~~~FC~dCD~fiHe~lh~CpgC   58 (59)
T d1z60a1          15 ERFCYGCQGELKDQHV-YVCAVCQNVFCVDCDVFVHDSLHSCPGC   58 (59)
T ss_dssp             CCEETTTTEECTTSEE-ECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred             CCCccCCCCcCCCCce-EECcCCCCccccccchhhhhhhcCCCCC
Confidence            4579999988865522 2233 99999999965543455689988

>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Death associated transcription factor 1, Datf1 (DIO-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.66  E-value=0.42  Score=29.13  Aligned_cols=49  Identities=24%  Similarity=0.470  Sum_probs=30.4

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHH------HHH---hcCCCCCCcccCccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVL------PWL---AAHPHCPYCRTPVLV  166 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~------~Wl---~~~~~CP~CR~~v~~  166 (167)
                      +...| ||......+ .++.-. |.--||..|+.      ...   .....||.|+....+
T Consensus        15 ~~~~C-iC~~~~~~~-~mi~Cd~C~~w~H~~Cvg~~~~~~~~~~~~~~~w~C~~C~~~~~p   73 (76)
T d1wema_          15 NALYC-ICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP   73 (76)
T ss_dssp             TCCCS-TTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred             CcCEE-ECCCccCCC-eEEEECCCCCcCCccccCCCcccccccCCCCCcEECCCCcCcCCC
Confidence            34457 888765433 334433 89999999982      111   234689999765444

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.20  E-value=0.16  Score=31.07  Aligned_cols=44  Identities=36%  Similarity=0.811  Sum_probs=29.2

Q ss_pred             cccccceeccccccCCceEEec-CCCcccHHhHHHHHhcCC----CCCCcccC
Q 044515          116 CRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPWLAAHP----HCPYCRTP  163 (167)
Q Consensus       116 ~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~Wl~~~~----~CP~CR~~  163 (167)
                      ....|.||...   + .++.-. |...||..|+.+.+....    .||.|+..
T Consensus         6 ~c~~C~~C~~~---~-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~   54 (70)
T d1fp0a1           6 SATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL   54 (70)
T ss_dssp             SSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred             CCCCCCCCCCc---C-EEEECCCCChhhccccCCCCcCcCCCCCEECcCCcCc
Confidence            34567777643   3 233333 999999999998764332    69999653

>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.88  E-value=1.4  Score=27.09  Aligned_cols=47  Identities=21%  Similarity=0.436  Sum_probs=30.9

Q ss_pred             ccceeccccccCCceEEec-CCCcccHHhHHH--H-Hh--cCCCCCCcccCcc
Q 044515          119 ICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLP--W-LA--AHPHCPYCRTPVL  165 (167)
Q Consensus       119 ~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~--W-l~--~~~~CP~CR~~v~  165 (167)
                      .+.||...+......+.-. |.--||..|+..  . ..  ....||.|+....
T Consensus        13 v~CiC~~~~~~~~~mI~Cd~C~~W~H~~C~g~~~~~~~~~~~~~C~~C~~~~g   65 (79)
T d1wepa_          13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG   65 (79)
T ss_dssp             CCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred             eEeECCCccCCCCcEEECCCCCCcEeccccCcchhcCCCCCEEECccCcCCcC
Confidence            4449998765554444444 999999999842  1 11  2358999987543

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.46  E-value=0.42  Score=28.56  Aligned_cols=38  Identities=18%  Similarity=0.350  Sum_probs=27.3

Q ss_pred             ccccccccceeccccccCCceEEec-CCCcccHHhHHHH
Q 044515          113 CRSCRKICSVCLEGFQDKQQIAKLS-CSHKFHLDCVLPW  150 (167)
Q Consensus       113 ~~~~~~~C~IC~e~~~~~~~~~~lp-C~H~Fh~~Ci~~W  150 (167)
                      .+++...|.+|...|..-..-.+-. ||++||..|....
T Consensus         4 ~d~~~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~Cs~~~   42 (64)
T d1joca1           4 EDNEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKN   42 (64)
T ss_dssp             CGGGCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEE
T ss_pred             CcccCCcCcCcCCcccCCccccchhhhCCeecccccCCc
Confidence            3344567999999987654434444 9999999996543