Citrus Sinensis ID: 044550

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660--
Protein Sequence
VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccEEEEEEccccccccccHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHcccccccEEEEEcccHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEccHHHHHHHHHHHccEEEEEEccccccccccccccEEEEEEEccccccccccccccccccccHHHHccccEEEEEcccccccccccccccccccccccccccccccccHHccccccEEEcccccccccccHHHHcccccccEEcccccccccccccccccccccccccEEEcccccccccccccccccccccccccccEEccccccccHHHHHHcccccccccccEEEEEccccccccccccHHHHHHcccccccccEEEEEEcccccccccccccccccEEEEEccccccccccccccccccEEEccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcEEEccccccccccccccEEEcccHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHccccccEEEEEEccHHHHHHHccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEHHHHHHHHHHHHccccEEEEEcccccccccccccccEEEcccccccccccEHHHHcccccccccHHcccccEEEEEccccccccccccccccccEEEEcccccccccccccccccccEEEEcccccHHcccccccccccccEEEEcccccHccccccccccccccEEEEEEccccccccccccHHHHHHHHHcccccccccccccccccHHHHHHccccccccccEEEcccccccccccccccHHHHHHHccccccccEEEEEccccccccHHHccccccEEEEEccccccccccccccccccEEEEccccccccccHHHccc
Coil and Loop (DISEMBL)
vrlvtgvdEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQlkdssddmedieavdddnalalaphkkkVRSFFCAvsncfgsfkqlsLRHHIAVKIREISEKLDEIAARKDRFKFVENvsnsvkkperertislidegevcgrvdEKNELLSKLLCESSEQQKGLHVISLvglggiepFFLRLknglhgskIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFgrsfedreklEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQgylnakedeEMEMIGEECFNILAARSFFQEfkknddddimsckmhDIVHDFAQFVSSKECLWLQINGTKESVINSFgdnvrhlglnfqrgasfpmsihRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNlqkldirgcqylrgLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVvgggvdgggtcRLESLKNLQLLRKCSIeglkglsnvshvdevERLQLYNKKNLLRlglqfggdiegrrknEKDKQLLEAlqpplnveeLEIESyrgnifpkwltsLTNLRELKLSLcvncehlpplgklpleklqLKNLKSVKRvgneflgi
Flexible Loop (DISEMBL)
vrlvtgvdeevkkltinleAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIaarkdrfkfvenvsnsvkkperertislidegevcgrvDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMgrkiarkckglPLAAKVignllrskstvKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVgggvdgggtCRLESLKNLQLLRKCSIeglkglsnvshvdeVERLQlynkknllrlglqfggdiegrrKNEKDKQLLealqpplnveELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLpplgklpleklqlknlksvkrvgneflgi
Low Complexity Region (SEG)
VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSddmedieavdddNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDeknellskllcesseQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKedeememigeeCFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFvvgggvdgggTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHlpplgklpleklqlkNLKSVKRVGNEFLGI
Disordered region (IsUnstruct)
*********EVKKLTINLEAIRAVLED********DKAVTLWLDQ******************ALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVE**************ISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI******************PLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNL*************
Disordered Region (DISOPRED)
VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNA**************************LSLRHHIAVKIREISEKLDEIAARKDRFKFV*******************DEGEVCGRVDEKNELLS********QQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLA*************PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKE*EEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQI*********SFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE*****EKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI
Disordered Region (DISEMBL)
VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI
Disordered Region (DISPRO)
VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VRLVTGVDEExxxxxxxxxxxxxxxxxxxxxQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	662	2.2.26 [Sep-21-2011]
Q7XA42	979	Putative disease resistan	N/A	no	0.643	0.435	0.330	2e-54
Q7XA40	992	Putative disease resistan	N/A	no	0.663	0.442	0.335	1e-53
Q7XA39	988	Putative disease resistan	N/A	no	0.652	0.437	0.313	4e-52
Q7XBQ9	970	Disease resistance protei	N/A	no	0.643	0.439	0.312	1e-48
Q9LRR5	1424	Putative disease resistan	yes	no	0.699	0.325	0.300	7e-47
Q9LRR4	1054	Putative disease resistan	no	no	0.687	0.431	0.281	6e-45
Q38834	852	Disease resistance RPP13-	no	no	0.592	0.460	0.274	9e-30
Q39214	926	Disease resistance protei	no	no	0.487	0.348	0.250	3e-19
Q9C646	899	Probable disease resistan	no	no	0.522	0.384	0.271	1e-18
Q8W3K3	910	Putative disease resistan	no	no	0.519	0.378	0.25	9e-18

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score =  214 bits (544), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 169/512 (33%), Positives = 245/512 (47%), Gaps = 86/512 (16%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLE 247
           LK G  G+ +  TTR E V  +MG+     +  L+ E+CW LF Q AF G   E    L 
Sbjct: 278 LKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAF-GHQEEINPNLM 336

Query: 248 PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLE-------------- 293
            +G++I +KC G+PLAAK +G +LR K   +EW+ + +S +W + +              
Sbjct: 337 AIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYH 396

Query: 294 -------------------------------IGQGYLNAKEDEEMEMIGEECFNILAARS 322
                                          +  G+L +K + E+E +G E +N L  RS
Sbjct: 397 HLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRS 456

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLN 382
           FFQE +          KMHD++HD A  + S                N+   N+R +  N
Sbjct: 457 FFQEIEVESGKTYF--KMHDLIHDLATSLFSA---------------NTSSSNIREINAN 499

Query: 383 FQRGASFPMSIHRFNRFSILS-ELFSKLVFLRA--LRNW-IREIPENVGKLIHLKYLNLS 438
           +     + MSI      S  S  L  K V LR   LRN  + ++P ++G L+HL+YL+LS
Sbjct: 500 YD---GYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLS 556

Query: 439 -ELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI 497
              RI  +P+ LC+L NLQ LD+  C  L  LP    KL ++R+LL DG  L    P  I
Sbjct: 557 GNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTS-TPPRI 615

Query: 498 SRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQL 557
             LT L++L  FV+G         +L  LKNL L    SI     L  V    + +   L
Sbjct: 616 GLLTCLKSLSCFVIGKRKGH----QLGELKNLNLYGSISI---TKLDRVKKDTDAKEANL 668

Query: 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL--TS 615
             K NL  L L +  D++G  K+  D ++LEAL+P  N++ LEI  + G   P W+  + 
Sbjct: 669 SAKANLHSLCLSW--DLDG--KHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSV 724

Query: 616 LTNLRELKLSLCVNCEHLPPLGKLP-LEKLQL 646
           L N+  +++  C NC  LPP G+LP LE L+L
Sbjct: 725 LKNVVSIRIRGCENCSCLPPFGELPCLESLEL 756

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.
Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score =  211 bits (537), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 172/513 (33%), Positives = 255/513 (49%), Gaps = 74/513 (14%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLE 247
           LK G  G+ I +TTR E +  +MG+  +  +  L++E+CW LFKQ AF  ++ E   KL 
Sbjct: 278 LKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQT-ETSPKLM 336

Query: 248 PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV---------------- 291
            +G++I +KC G+PLAAK +G LLR K    EW+ + +SE+W +                
Sbjct: 337 EIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYH 396

Query: 292 -----------------------------LEIGQGYLNAKEDEEMEMIGEECFNILAARS 322
                                        L +   +L +K + E+E +G E +N L  RS
Sbjct: 397 HLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRS 456

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGD-NVRHLGL 381
           FFQE +          KMHD++HD A  + S       I       IN   D ++  +  
Sbjct: 457 FFQEIEVKSGKTYF--KMHDLIHDLATSMFSASASSRSIRQ-----INVKDDEDMMFIVT 509

Query: 382 NFQRGASFPMSIHRFNRFSILSELFSKLVFLRALR---NWIREIPENVGKLIHLKYLNLS 438
           N++   S   S    + +S    LF + V LR L    +   ++P +VG L+HL+YL+LS
Sbjct: 510 NYKDMMSIGFS-EVVSSYS--PSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLS 566

Query: 439 ELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGIS 498
             +I  +P+ LC+L NLQ LD+  CQ L  LP    KL ++R+L+ D   L   MP  I 
Sbjct: 567 GNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTS-MPPRIG 625

Query: 499 RLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY 558
            LT L+TL  FVVG   +  G  +L  L+NL L    SI  L+ + N     E     L 
Sbjct: 626 LLTCLKTLGYFVVG---ERKGY-QLGELRNLNLRGAISITHLERVKNDMEAKEA---NLS 678

Query: 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL--TSL 616
            K NL  L + +  D   R ++E+ K +LEAL+P  N++ LEI  + G   P W+  + L
Sbjct: 679 AKANLHSLSMSW--DRPNRYESEEVK-VLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVL 735

Query: 617 TNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
            N+  + +S C NC  LPP G+LP LE L+L++
Sbjct: 736 KNVVSILISGCENCSCLPPFGELPCLESLELQD 768

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score =  206 bits (525), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 160/511 (31%), Positives = 241/511 (47%), Gaps = 79/511 (15%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLE 247
           L  G  G+ I  TTR E V  +MG+     +  L+  +   LF Q AF G+  E    L 
Sbjct: 280 LTVGARGASILATTRLEKVGSIMGTLQPYHLSNLSPHDSLLLFMQRAF-GQQKEANPNLV 338

Query: 248 PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV---------------- 291
            +G++I +KC G+PLAAK +G LLR K    EW+ + ++E+W +                
Sbjct: 339 AIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDNEIWSLPQDESSILPALRLSYH 398

Query: 292 -----------------------------LEIGQGYLNAKEDEEMEMIGEECFNILAARS 322
                                        L +  G+L +K + E+E +G E +N L  RS
Sbjct: 399 HLPLDLRQCFAYCAVFPKDTKMIKENLITLWMAHGFLLSKGNLELEDVGNEVWNELYLRS 458

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQ--FVSSKECLWLQINGTKESVINSFGDNVRHLG 380
           FFQE +    +     K+HD++HD A   F +S  C        +E  +  +   V  +G
Sbjct: 459 FFQEIEAKSGNTYF--KIHDLIHDLATSLFSASASC-----GNIREINVKDYKHTVS-IG 510

Query: 381 LNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSEL 440
                 +  P  + +F    +L+  +SKL           ++P ++G L+HL+YL+LS  
Sbjct: 511 FAAVVSSYSPSLLKKFVSLRVLNLSYSKL----------EQLPSSIGDLLHLRYLDLSCN 560

Query: 441 RIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRL 500
               +PE LC+L NLQ LD+  C  L  LP    KL ++R L+ DG  L    P  I  L
Sbjct: 561 NFRSLPERLCKLQNLQTLDVHNCYSLNCLPKQTSKLSSLRHLVVDGCPLTS-TPPRIGLL 619

Query: 501 TSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK 560
           T L+TL  F+VG         +L  LKNL L    SI  L+ + N    D      L  K
Sbjct: 620 TCLKTLGFFIVG----SKKGYQLGELKNLNLCGSISITHLERVKN----DTDAEANLSAK 671

Query: 561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL--TSLTN 618
            NL  L + +  D   R ++ K+ ++LEAL+P  N++ LEI ++ G  FP W+  + L  
Sbjct: 672 ANLQSLSMSWDNDGPNRYES-KEVKVLEALKPHPNLKYLEIIAFGGFRFPSWINHSVLEK 730

Query: 619 LRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
           +  +++  C NC  LPP G+LP LE L+L+N
Sbjct: 731 VISVRIKSCKNCLCLPPFGELPCLENLELQN 761

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score =  195 bits (495), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 161/515 (31%), Positives = 238/515 (46%), Gaps = 89/515 (17%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLE 247
           LK G  G+ +  TTR E V  +MG+     +  L++E+CW LF Q A FG   E    L 
Sbjct: 279 LKVGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRA-FGHQEEINPNLV 337

Query: 248 PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV---------------- 291
            +G++I +K  G+PLAAK +G +L  K   + W+ + +S +W +                
Sbjct: 338 AIGKEIVKKSGGVPLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYH 397

Query: 292 -----------------------------LEIGQGYLNAKEDEEMEMIGEECFNILAARS 322
                                        L +  G+L +K + E+E +G+E +  L  RS
Sbjct: 398 QLPLDLKQCFAYCAVFPKDAKMEKEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRS 457

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLN 382
           FFQE +  D       KMHD++HD A  + S                N+   N+R +   
Sbjct: 458 FFQEIEVKDGKTYF--KMHDLIHDLATSLFSA---------------NTSSSNIREIN-- 498

Query: 383 FQRGASFPMSI--HRFNRFSILSELFSKLVFLRALR---NWIREIPENVGKLIHLKYLNL 437
            +   +  MSI       F  L  L  K + LR L    +   ++P ++G L+HL+YLNL
Sbjct: 499 -KHSYTHMMSIGFAEVVFFYTLPPL-EKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNL 556

Query: 438 SELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI 497
               +  +P+ LC+L NLQ LD++ C  L  LP    KL ++R+LL DG+  L  MP  I
Sbjct: 557 YGSGMRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRI 616

Query: 498 SRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQL 557
             LT L+TL +FVVG         +L  L NL L     I  L+ + N     E     L
Sbjct: 617 GSLTCLKTLGQFVVG----RKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEA---NL 669

Query: 558 YNKKNLLRLGLQ---FGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL- 613
             K NL  L +    FG  I       ++ ++LEAL+P  N+  L+I  +RG   P+W+ 
Sbjct: 670 SAKGNLHSLSMSWNNFGPHI----YESEEVKVLEALKPHSNLTSLKIYGFRGIHLPEWMN 725

Query: 614 -TSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQL 646
            + L N+  + +S   NC  LPP G LP LE L+L
Sbjct: 726 HSVLKNIVSILISNFRNCSCLPPFGDLPCLESLEL 760

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  189 bits (480), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 167/555 (30%), Positives = 260/555 (46%), Gaps = 92/555 (16%)

Query: 182 EPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFE 241
           E F +   +   GSKI +TTR+E V+ +  +  I  +K +  EECW L  + AF   S  
Sbjct: 290 ESFQVAFTDAEEGSKIVLTTRSEIVSTVAKAEKIYQMKLMTNEECWELISRFAFGNISVG 349

Query: 242 D-REKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRI------LESEMWKVLEI 294
              ++LE +G++IA +CKGLPLAA+ I + LRSK    +W  +        + +  VL++
Sbjct: 350 SINQELEGIGKRIAEQCKGLPLAARAIASHLRSKPNPDDWYAVSKNFSSYTNSILPVLKL 409

Query: 295 G-------------------QGYLNAKED-----------------EEMEMIGEECFNIL 318
                               +G++  +E+                   +E IG +    L
Sbjct: 410 SYDSLPPQLKRCFALCSIFPKGHVFDREELVLLWMAIDLLYQPRSSRRLEDIGNDYLGDL 469

Query: 319 AARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRH 378
            A+SFFQ      D  + S  MHD+++D A+ VS   C  L+ +   E          RH
Sbjct: 470 VAQSFFQRL----DITMTSFVMHDLMNDLAKAVSGDFCFRLEDDNIPE-----IPSTTRH 520

Query: 379 LGLNFQR-----------GASFPMSIHRFNRFS----------ILSELFSKLVFLRAL-- 415
              +  +           GA F  +I  FN  +          +L+ L + L  LR L  
Sbjct: 521 FSFSRSQCDASVAFRSICGAEFLRTILPFNSPTSLESLQLTEKVLNPLLNALSGLRILSL 580

Query: 416 -RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIR 474
               I  +P+++  L  L+YL+LS  +I+ +PE +C L NLQ L +  C+ L  LP  I 
Sbjct: 581 SHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQTLLLSNCRDLTSLPKSIA 640

Query: 475 KLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRK 534
           +L+N+R L   GT L++ MP GI +L SL+ L  FV+ G + G G   L  LK L  LR 
Sbjct: 641 ELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVI-GRLSGAG---LHELKELSHLR- 694

Query: 535 CSIEGLKGLSNVSHVDEVERLQLYNKKNL----LRLGLQFGGDIEGRRKNEK--DKQLLE 588
                +  L NV+   E +   L  K  L    L+  ++  G + G         K++L 
Sbjct: 695 -GTLRISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGFVPGSFNALACDQKEVLR 753

Query: 589 ALQPPLNVEELEIESYRGNIFPKWL--TSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQ 645
            L+P  +++   IESY+G  FPKWL  +S   +  + LS C  C  LPP+G+LP L+ L 
Sbjct: 754 MLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNLCISLPPVGQLPSLKYLS 813

Query: 646 LKNLKSVKRVGNEFL 660
           ++    +++VG +F 
Sbjct: 814 IEKFNILQKVGLDFF 828

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRR4|R13L1_ARATH Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=3 SV=1

 Score =  182 bits (463), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 157/558 (28%), Positives = 257/558 (46%), Gaps = 103/558 (18%)

Query: 182 EPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFE 241
           +PF     +   GS+I VTTR++ VA +M + ++ +++ L++ +CWSLF +  F  +   
Sbjct: 299 QPFI----HAAQGSQILVTTRSQRVASIMCAVHVHNLQPLSDGDCWSLFMKTVFGNQEPC 354

Query: 242 DREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW----------KV 291
              ++  +  +I  KC+GLPLA K +G +LR +  V EW+R+L S +W           V
Sbjct: 355 LNREIGDLAERIVHKCRGLPLAVKTLGGVLRFEGKVIEWERVLSSRIWDLPADKSNLLPV 414

Query: 292 LEIGQGYLNA------------------------------------KEDEEMEMIGEECF 315
           L +   YL A                                    +  + +E +G E F
Sbjct: 415 LRVSYYYLPAHLKRCFAYCSIFPKGHAFEKDKVVLLWMAEGFLQQTRSSKNLEELGNEYF 474

Query: 316 NILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDN 375
           + L +RS  Q+ K           MHD +++ AQF S +     + +G K  V     + 
Sbjct: 475 SELESRSLLQKTKTR-------YIMHDFINELAQFASGEFSSKFE-DGCKLQV----SER 522

Query: 376 VRHLGL---NFQRGASF-------------PMSIHRFNRFSILSELFSK-----LVFLRA 414
            R+L     N+     F             P+S+   +R   L ++ S+     L  LR 
Sbjct: 523 TRYLSYLRDNYAEPMEFEALREVKFLRTFLPLSLTNSSRSCCLDQMVSEKLLPTLTRLRV 582

Query: 415 L---RNWIREIPENVGKLI-HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP 470
           L      I  +P +  K I H ++L+LS   +E++P++LC +YNLQ L +  C  L+ LP
Sbjct: 583 LSLSHYKIARLPPDFFKNISHARFLDLSRTELEKLPKSLCYMYNLQTLLLSYCSSLKELP 642

Query: 471 AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ 530
             I  L+N+R L   GT  L+ MP    RL SL+TL  F V    DG     L  L +L 
Sbjct: 643 TDISNLINLRYLDLIGTK-LRQMPRRFGRLKSLQTLTTFFVSAS-DGSRISELGGLHDLH 700

Query: 531 LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL------LRLGLQFGGDIEGRRKNEKDK 584
              K  I  L+ + +V+   E     L +KK+L       R G     +     + + + 
Sbjct: 701 --GKLKIVELQRVVDVADAAEA---NLNSKKHLREIDFVWRTGSSSSENNTNPHRTQNEA 755

Query: 585 QLLEALQPPLNVEELEIESYRGNIFPKWLT--SLTNLRELKLSLCVNCEHLPPLGKLP-L 641
           ++ E L+P  ++E+L IE Y+G  FP WL+  S + +  ++L  C  C  LP LG+LP L
Sbjct: 756 EVFEKLRPHRHIEKLAIERYKGRRFPDWLSDPSFSRIVCIRLRECQYCTSLPSLGQLPCL 815

Query: 642 EKLQLKNLKSVKRVGNEF 659
           ++L +  +  ++ +G +F
Sbjct: 816 KELHISGMVGLQSIGRKF 833

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38834|R13L4_ARATH Disease resistance RPP13-like protein 4 OS=Arabidopsis thaliana GN=RPP13L4 PE=2 SV=2

 Score =  132 bits (332), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 213/502 (42%), Gaps = 110/502 (21%)

Query: 193 HGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAFFGRSFE-DREKLEPM 249
            G  + VTTR+ESVA+ + + +  + +   L+ +  W LF  +AF       +R +LE +
Sbjct: 288 QGGSVIVTTRSESVAKRVQARDDKTHRPELLSPDNSWLLFCNVAFAANDGTCERPELEDV 347

Query: 250 GRKIARKCKGLPLAAKVIGNLLRSKSTV-KEWQRILE----------SEMWKVLE----- 293
           G++I  KCKGLPL  K +G LL  K  V  EW+RI E          SE   V+      
Sbjct: 348 GKEIVTKCKGLPLTIKAVGGLLLCKDHVYHEWRRIAEHFQDELRGNTSETDNVMSSLQLS 407

Query: 294 ---------------------------------IGQGYLNAKEDEEMEMIGEECFNILAA 320
                                            IG+G++  +        GE+CF+ L  
Sbjct: 408 YDELPSHLKSCILTLSLYPEDCVIPKQQLVHGWIGEGFVMWRNGRSATESGEDCFSGLTN 467

Query: 321 RSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLG 380
           R   +   K     I++CK+HD+V D    ++            K+S  N  G N RHLG
Sbjct: 468 RCLIEVVDKTYSGTIITCKIHDMVRDLVIDIAK-----------KDSFSNPEGLNCRHLG 516

Query: 381 L--NFQ----------RGASFPMSIHRFNRF-SILSELFSKLVFLRAL-------RNWIR 420
           +  NF           RG          N+  S L++ F+   +LR L          + 
Sbjct: 517 ISGNFDEKQIKVNHKLRGVVSTTKTGEVNKLNSDLAKKFTDCKYLRVLDISKSIFDAPLS 576

Query: 421 EIPENVGKLIHLKYLNLSELR-IERIPETLCELYNLQKLDIRGCQYLRGLPAGI---RKL 476
           EI + +  L HL  L+LS    + + P ++ +L+NLQ LD   CQ L+ L   I   +KL
Sbjct: 577 EILDEIASLQHLACLSLSNTHPLIQFPRSMEDLHNLQILDASYCQNLKQLQPCIVLFKKL 636

Query: 477 MNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCS 536
           + +  + N G+  L+  P GI  L  L  L  F      +G   C+L  +KNL  LRK  
Sbjct: 637 LVL-DMTNCGS--LECFPKGIGSLVKLEVLLGFKPARSNNG---CKLSEVKNLTNLRKLG 690

Query: 537 IEGLKGLSNVSHVDEVERLQLYNKKNLLRLGL----QFGGDIEGRRKNEKDKQLLEALQP 592
           +   +G      ++E E   L N   L+ + +     +G D+  +         ++AL P
Sbjct: 691 LSLTRG----DQIEEEELDSLINLSKLMSISINCYDSYGDDLITK---------IDALTP 737

Query: 593 PLNVEELEIESYRGNIFPKWLT 614
           P  + EL ++ Y G   P WL+
Sbjct: 738 PHQLHELSLQFYPGKSSPSWLS 759

Disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39214|RPM1_ARATH Disease resistance protein RPM1 OS=Arabidopsis thaliana GN=RPM1 PE=1 SV=1

 Score = 97.4 bits (241), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 178/399 (44%), Gaps = 76/399 (19%)

Query: 154 ELLSKLLCESSEQQKGLHVISLVGLGGI-EPFFLRLKNGLHGSKIFVTTRNESVARM--- 209
           EL+ KL+ E  + ++ + V+  V   G+     + L +G++GS++ +TTR+ +VA     
Sbjct: 267 ELVEKLV-EYLQSKRYIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYG 325

Query: 210 MGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDR-EKLEPMGRKIARKCKGLPLAAKVIG 268
           +GST    I+ L E+E W LF   AF     + R + LEP+ RK+  +C+GLPLA   +G
Sbjct: 326 IGSTKH-EIELLKEDEAWVLFSNKAFPASLEQCRTQNLEPIARKLVERCQGLPLAIASLG 384

Query: 269 NLLRSKSTVKEWQRILESEMWKV------------------------------------- 291
           +++ +K    EW+++  +  W++                                     
Sbjct: 385 SMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIMFLSFNDLPYPLKRCFLYCSLFPVN 444

Query: 292 ----------LEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMH 341
                     + + Q ++      + E + +   N L  R+  Q    N      + KMH
Sbjct: 445 YRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVILWNPFGRPKAFKMH 504

Query: 342 DIVHDFAQFVSSKECLWLQINGTKES-----VINSFGDNVRHLGLNFQRGASFPMSIHRF 396
           D++ + A  VS  E      N   +       + ++G   RHL +  +     P SI   
Sbjct: 505 DVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGS--RHLCIQKEMT---PDSIRAT 559

Query: 397 NRFSIL--------SELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERI 445
           N  S+L         EL   L  LRAL    + I ++P+ +  + +LKYLNLS+ +++ +
Sbjct: 560 NLHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKEL 619

Query: 446 PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN 484
           P+   +L NL+ L+ +  + +  LP G+ KL  +R L+ 
Sbjct: 620 PKNFHKLVNLETLNTKHSK-IEELPLGMWKLKKLRYLIT 657

Disease resistance (R) protein that specifically recognizes the AvrRpm1 type III effector avirulence protein from Pseudomonas syringae. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Acts via its interaction with RIN4, and probably triggers the plant resistance when RIN4 is phosphorylated by AvrRpm1. It is then degraded at the onset of the hypersensitive response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C646|RX24L_ARATH Probable disease resistance protein RXW24L OS=Arabidopsis thaliana GN=RXW24L PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 125/461 (27%), Positives = 204/461 (44%), Gaps = 115/461 (24%)

Query: 181 IEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAFFGR 238
           I+P F   K    G K+ +T+R ES+A M G T  IS K   L+  + W+LF+ +A   +
Sbjct: 283 IKPIFPPKK----GWKVLLTSRTESIA-MRGDTTYISFKPKCLSIPDSWTLFQSIAMPRK 337

Query: 239 S---FEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIG 295
               F+  E++E MG+K+ + C GL LA KV+G LL +K T+ +W+R+ E+    ++E  
Sbjct: 338 DTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSENIGSHIVERT 397

Query: 296 QGYLNAKEDEEMEMIGEE-------CFNILA----------------------------- 319
            G  N+  D  + +  EE       CF  LA                             
Sbjct: 398 SGN-NSSIDHVLSVSFEELPNYLKHCFLYLAHFPEDHEIDVEKLHYYWAAEGISERRRYD 456

Query: 320 -------ARSFFQEFKKND----DDDIM-----SCKMHDIVHDFAQFVSSKECLWLQI-- 361
                    S+ +E  + +    + D+M     +C++HD++ +   F  +KE  +LQI  
Sbjct: 457 GETIRDTGDSYIEELVRRNMVISERDVMTSRFETCRLHDMMREICLF-KAKEENFLQIVS 515

Query: 362 NGTKESVINSFGDNVRHLGLNFQRGASFPMSIH--RF-----------------NRFSIL 402
           N +  S   + G + R +  N       P ++H  R+                 NR  +L
Sbjct: 516 NHSPTSNPQTLGASRRFVLHN-------PTTLHVERYKNNPKLRSLVVVYDDIGNRRWML 568

Query: 403 S-ELFSKLVFLRALRNWIR------EIPENVGKLIHLKYLNLSELRIERIPETLCELYNL 455
           S  +F+++  LR L + ++      ++P ++GKLIHL+YL+L + ++  +P +L  L  L
Sbjct: 569 SGSIFTRVKLLRVL-DLVQAKFKGGKLPSDIGKLIHLRYLSLKDAKVSHLPSSLRNLVLL 627

Query: 456 QKLDIRGCQYLRGLPAGIRKLMNMRSL--LNDGTYLLKYMPIGISRLTSLRTLEKFVVGG 513
             LDIR       +P      M MR L  L    ++ +   + +S L  L  LE F    
Sbjct: 628 IYLDIRTDFTDIFVP---NVFMGMRELRYLELPRFMHEKTKLELSNLEKLEALENFSTKS 684

Query: 514 GV--DGGGTCRLESL-------KNLQLLRKCSIEGLKGLSN 545
               D  G  RL +L        +LQ L   S+ GL+ L N
Sbjct: 685 SSLEDLRGMVRLRTLVIILSEGTSLQTL-SASVCGLRHLEN 724

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8W3K3|DRL8_ARATH Putative disease resistance protein At1g58400 OS=Arabidopsis thaliana GN=At1g58400 PE=3 SV=1

 Score = 92.4 bits (228), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 185/452 (40%), Gaps = 108/452 (23%)

Query: 179 GGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAFF 236
           G I P F   K    G K+ +T+R E++A M G+   ++ K   L   E W LF+++A  
Sbjct: 283 GLINPIFPPKK----GWKVLITSRTETIA-MHGNRRYVNFKPECLTILESWILFQRIAMP 337

Query: 237 ---GRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILE-------- 285
                 F+  +++E MG+++ + C GLPLA KV+G LL +K T  +W+R+ E        
Sbjct: 338 RVDESEFKVDKEMEMMGKQMIKYCGGLPLAVKVLGGLLAAKYTFHDWKRLSENIGCHIVG 397

Query: 286 ---------SEMWKVLEIG----QGYL--------NAKEDEEMEM--------------- 309
                    S ++ VL +       YL        +  ED  +++               
Sbjct: 398 RTDFSDGNNSSVYHVLSLSFEELPSYLKHCFLYLAHFPEDHNIKVEKLSYCWAAEGILEP 457

Query: 310 ----------IGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWL 359
                     +GE     L  R+     +        +C +HD++ +    + +KE  ++
Sbjct: 458 RHYHGQTIRDVGESYIEELVRRNMVIAERDVTTLRFEACHLHDMMREVC-LLKAKEENFV 516

Query: 360 QINGTKESVINSFGDNVRHLGLNFQRGASFPMSIH-------------------RFNRFS 400
           QI        NS     ++ G + +  +  P ++H                   R   + 
Sbjct: 517 QIASILPPTANS-----QYPGTSRRFVSQNPTTLHVSRDINNPKLQSLLIVWENRRKSWK 571

Query: 401 ILSELFSKLVFLRALRNWI-----REIPENVGKLIHLKYLNLSELRIERIPETLCELYNL 455
           +L   F +L  LR L  +      R +P  +GKLIHL+YLNL   R+ R+P +L  L  L
Sbjct: 572 LLGSSFIRLELLRVLDLYKAKFEGRNLPSGIGKLIHLRYLNLDLARVSRLPSSLGNLRLL 631

Query: 456 QKLDIRGCQYLRGLP---AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVG 512
             LDI  C     +P    G+ +L  +R   N      K + +G+  L +L TLE F   
Sbjct: 632 IYLDINVCTKSLFVPNCLMGMHELRYLRLPFNTS----KEIKLGLCNLVNLETLENF--- 684

Query: 513 GGVDGGGTCRLESLKNLQLLRKCSIEGLKGLS 544
                     LE L+ +  LR  +I   K +S
Sbjct: 685 ----STENSSLEDLRGMVSLRTLTIGLFKHIS 712

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
224110248	888	cc-nbs-lrr resistance protein [Populus t	0.968	0.721	0.376	1e-112
224115608	922	cc-nbs-lrr resistance protein [Populus t	0.966	0.694	0.334	7e-95
255558785	661	leucine-rich repeat containing protein,	0.688	0.689	0.430	7e-94
224114824	941	cc-nbs-lrr resistance protein [Populus t	0.685	0.482	0.402	2e-91
359482769	904	PREDICTED: putative disease resistance p	0.696	0.509	0.398	3e-91
224101679	788	nbs-lrr resistance protein [Populus tric	0.918	0.771	0.371	7e-91
359482792	922	PREDICTED: putative disease resistance p	0.694	0.498	0.403	8e-91
224134406	987	cc-nbs-lrr resistance protein [Populus t	0.805	0.540	0.380	3e-90
359482790	923	PREDICTED: putative disease resistance p	0.699	0.501	0.393	3e-90
224122712	945	cc-nbs-lrr resistance protein [Populus t	0.694	0.486	0.395	4e-90

>gi|224110248|ref|XP_002333128.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222834939|gb|EEE73388.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 288/765 (37%), Positives = 416/765 (54%), Gaps = 124/765 (16%)

Query: 1   VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVD 60
           V LV GV ++  KL  NL  I++VLEDA ++Q++ DKAV  W+D+LKD+  DM+D+  +D
Sbjct: 25  VNLVVGVKKQCDKLKSNLLDIQSVLEDADRKQVK-DKAVRNWVDKLKDACYDMDDV--LD 81

Query: 61  DDNALAL----------APHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDE 110
           + +   L             ++K++  F   S CF  F Q+  R  IA+KI+E+SEK+D+
Sbjct: 82  EWSTAILRWKMEEAEENTHSRQKIQCSFLG-SPCF-CFNQVVRRRDIALKIKEVSEKVDD 139

Query: 111 IAARKDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCES------- 163
           IA  K+R K+  ++     + +R  T S +DE  V GR  EK  ++SKLL E        
Sbjct: 140 IA--KERAKYGFDLYKGTDELQRLTTTSFVDESSVIGRDGEKRNVVSKLLAERRPTNLVE 197

Query: 164 --------SEQQKGLHVISLV------GLGGIEPFFLRLKNGLHGSKIFVTTRNESVARM 209
                   SE   G  ++ ++        G  E     L     GS+I VTTR ++VA M
Sbjct: 198 LQSLLQGVSESITGKRLLLVLDDVWTENHGQWEQLKPSLTGCARGSRILVTTRKDAVATM 257

Query: 210 MGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN 269
           MG+ + I+I++L++E C S+F  +AF  RS ++RE+L  +G KIA KCKGLPLAAKV+G 
Sbjct: 258 MGTDHRINIEKLSDEICRSIFNHVAFQERSEDERERLTDIGDKIANKCKGLPLAAKVLGG 317

Query: 270 LLRSKSTVKEWQRILESEMWKVLEI----------------------------------- 294
           L++SK T +EW+R+L SE+W++ E+                                   
Sbjct: 318 LMQSKRTREEWERVLSSELWRLDEVDRDQVESRIFIPLLLSYYDLPSVVRRCFLYCAMFP 377

Query: 295 ---------------GQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCK 339
                           QGY+      +ME++GE  F++LAARSFFQ+F+  D  + M  K
Sbjct: 378 KDFEMVKDELVKMWMAQGYIKETSGGDMELVGERYFHVLAARSFFQDFE-TDRFEGMKFK 436

Query: 340 MHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRF 399
           MHDIVHDFAQ+++  ECL + +N    + + +  + VRHL +      SFP+SIH+    
Sbjct: 437 MHDIVHDFAQYMTKNECLTVDVNTLGGATVETSIERVRHLSMMVSEETSFPVSIHKAKGL 496

Query: 400 -------------SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSEL-RI 442
                        + L +LF +L  +R+L    + I+EIP  VGKLIHL+++NL+    +
Sbjct: 497 RSLLIDTRDPSFGAALPDLFKQLTCIRSLDLSASSIKEIPNEVGKLIHLRHVNLARCGEL 556

Query: 443 ERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL--LNDGTYLLKYMPIGISRL 500
           E +PET+C+L NLQ LD+  C+ L+ LP  I KL+ +R L     G   + ++P GI R+
Sbjct: 557 ESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIYRSG---VDFIPKGIERI 613

Query: 501 TSLRTLEKF-VVGGGVDGGGTCRLESLKNLQLLRKC-SIEGLKGLSNVSHVDEVERLQLY 558
           T LRTL+ F V GGG +      L  LKNL  +    SI  L G   +    +    QL 
Sbjct: 614 TCLRTLDVFKVCGGGENESKAANLRELKNLNHIGGSFSIRNLGG--GIEDASDAAEAQLK 671

Query: 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTN 618
           NKK LLRL L F         N+++  L+EALQPP ++E L I SY G   P W+ +LT 
Sbjct: 672 NKKRLLRLELGFD-------YNQENGILIEALQPPSDLECLTISSYGGLDLPHWMMTLTR 724

Query: 619 LRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLGI 662
           L+EL+L  C N E L PLG LP LE L L +LK V+R+   FLGI
Sbjct: 725 LQELRLDDCTNLEVLRPLGGLPNLEILVLSSLK-VRRLDAGFLGI 768

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115608|ref|XP_002332098.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222874918|gb|EEF12049.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  354 bits (909), Expect = 7e-95,   Method: Compositional matrix adjust.
 Identities = 269/803 (33%), Positives = 414/803 (51%), Gaps = 163/803 (20%)

Query: 1   VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVD 60
           VRLV GV  EVKKLT N +AI+ VL DA++RQ++ D ++  W+DQLK  S DM+D+  +D
Sbjct: 25  VRLVVGVKNEVKKLTSNFQAIQDVLADAEERQLK-DGSIKRWIDQLKGVSYDMDDV--LD 81

Query: 61  D------DNALALAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAAR 114
           +       + + +  H +K     C++   +  F+++ LR  IA KI+E++E++D I   
Sbjct: 82  EWGTSIAKSQMKVNEHPRKTARKVCSMIFSYLCFREVGLRRDIAHKIKELNERIDGIVIE 141

Query: 115 KDRFKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVIS 174
           KD+F F ++    +K+ E ++T S+ID  E  GR  +K+ +++ LL ESS Q   L  IS
Sbjct: 142 KDKFHF-KSSEVGIKQLEYQKTTSVIDATETKGREKDKDRVINMLLSESS-QGLALRTIS 199

Query: 175 LVGLGGIEPFFL-------RLKNGLHGSKIFVTTRNE----SVAR-----MMGST-NIIS 217
           LVG+GGI    L       R+       +I+V   +      +A+     +MGST N+  
Sbjct: 200 LVGMGGIGKTTLAQLVYNDRVVESYFEKRIWVCVSDPFDEIRIAKAILEGLMGSTQNLNE 259

Query: 218 IKQLAEEECWSLFKQLAFFGRSF---------EDREKLEPM------------------- 249
           ++ L +        Q +  G+ F         ED  K E +                   
Sbjct: 260 LQNLVQH------VQQSIRGKKFLLVLDDVWNEDSSKWEQLKNSLKCGCLPGSRILVTTR 313

Query: 250 GRKIAR--------------------KCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW 289
            RK+A                     KCKGLPLAAK +G+LLR K +  EWQ +L S +W
Sbjct: 314 KRKVANCMGSSSADILELGLLSTDESKCKGLPLAAKSLGSLLRFKRSRAEWQSVLNSHVW 373

Query: 290 KV---------------------------------------------LEIGQGYLNAKED 304
           +                                              L + QG+L  K++
Sbjct: 374 ETEEAESKILASLQLSYHDLPSDMRRCFSYCAVFPKDFKFQRDTLIKLWMAQGFLREKQN 433

Query: 305 EEMEMIGEECFNILAARSFFQEFKKNDDD-DIMSCKMHDIVHDFAQFVSSKECLWLQING 363
           EEME+ G ECF  LAARSFFQ+F+K+ +D  I +CKMHD+VHDFAQ ++  EC  ++I+G
Sbjct: 434 EEMEVKGRECFEALAARSFFQDFEKDKNDGSIYACKMHDMVHDFAQSLTKNECFSVEIDG 493

Query: 364 TKESVINSFGDNVRHLGL---NFQRGASFPMSIHRFNRF-------------SILSELFS 407
           + ES I SF  + RH  +   N++     P +IH F +              + L  L +
Sbjct: 494 STESKIYSFSRDARHFMVVLRNYETDP-LPATIHSFKKLRSLIVDGYPSLMNAALPNLIA 552

Query: 408 KLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQ 464
            L  LR L   R  + E+P N+GKLIHL++++LS   I  +PE +CELYN+  L++  C+
Sbjct: 553 NLSCLRTLKFPRCGVEEVPSNIGKLIHLRHVDLSFNLIRELPEEMCELYNMLTLNVSFCE 612

Query: 465 YLRGLPAGIRKLMNMRSL----LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGT 520
            L  LP  + +L+ +R L      D +  +K    G+  L+SLR L++F V G    G  
Sbjct: 613 KLERLPDNMGRLVKLRHLRVGIYWDDSSFVKMS--GVEGLSSLRELDEFHVSG---TGKV 667

Query: 521 CRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKN 580
             +  LK+L  L+      +K L +V   +EV++ ++ +KK+L RL L F    +  + N
Sbjct: 668 SNIGDLKDLNHLQGSLT--IKWLGDVKDPNEVKKAEMKSKKHLTRLDLFFQSRTDREKIN 725

Query: 581 EKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP 640
             D ++LEAL+PP N+E L++ +Y+G I P + + +  LR ++L      E+LPPLGKLP
Sbjct: 726 --DDEVLEALEPPPNLESLDLSNYQG-IIPVFPSCINKLRVVRLWDWGKIENLPPLGKLP 782

Query: 641 -LEKLQLKNLKSVKRVGNEFLGI 662
            LE+L + +++ V RVG EFLG+
Sbjct: 783 SLEELTVGDMECVGRVGREFLGL 805

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558785|ref|XP_002520416.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223540401|gb|EEF41971.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 212/493 (43%), Positives = 302/493 (61%), Gaps = 37/493 (7%)

Query: 194 GSKIFVTTRNESVARMMGST--NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGR 251
           GS I V TR+ESVA  MG T  ++  +  L  EECWS+F ++AFF ++ ++R +LE +GR
Sbjct: 128 GSSILVITRDESVAINMGCTRDHLFKLGNLFLEECWSIFSEIAFFEKNNDERVQLEAIGR 187

Query: 252 KIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKEDEEMEMIG 311
           +I +KC GLPLAAK +GNLLR K + +EWQ +L SE+W++    +GYL     ++ME IG
Sbjct: 188 EIVKKCDGLPLAAKTLGNLLRFKDSRQEWQSVLNSEVWEL----EGYLRQTHVDDMERIG 243

Query: 312 EECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINS 371
           E+  + LA  S F+  +K D   +MSCKM++IVHDFAQ++   EC  +++N  +E  + S
Sbjct: 244 EKYLHNLAGHSSFEVVQKIDCGHVMSCKMYNIVHDFAQYIVKNECFSIEVNDEEELKMMS 303

Query: 372 FGDNVRHLGLNFQRGASFPMSIHRFNRF--------------SILSELFSKLVFLRALR- 416
               VRHL +   +  SFP SI+R                  + LS LF +L  LR+L  
Sbjct: 304 LHKEVRHLRVMLGKDVSFPSSIYRLKDLRTLWVQCKGNSKVGAALSNLFGRLTCLRSLNL 363

Query: 417 ---NWIREIPENVGKLIHLKYLNLSELR-IERIPETLCELYNLQKLDIRGCQYLRGLPAG 472
              N + EIP ++ KLIHL+ ++LS  + ++ +PE LCEL NLQ L++ GC  L  LP G
Sbjct: 364 SNCN-LAEIPSSISKLIHLRQIDLSYNKDLKGLPEALCELDNLQTLNMDGCFSLVKLPRG 422

Query: 473 IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLL 532
           + KL+N+R L N G      +P GIS+LT LR+L +F +G   D    C L  LKNL  L
Sbjct: 423 VEKLINLRHLHNGG--FEGVLPKGISKLTCLRSLNRFSIGQ--DNQEACNLGDLKNLNHL 478

Query: 533 RKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG-GDIEGRRKNEKDKQLLEALQ 591
           + C    + GL  V+ V E ++ +L  K  + RL L+FG GD E R+ +  D +LL AL+
Sbjct: 479 QGCVC--IMGLEIVADVGEAKQAELRKKTEVTRLELRFGKGDAEWRKHH--DDELLLALE 534

Query: 592 PPLNVEELEIESYRG-NIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL 649
           P   VEEL I  Y+G  +FP W+  L+NL+ + L+ C  CEHLPPLGKLP LE L++  +
Sbjct: 535 PSPYVEELGIYDYQGRTVFPSWMIFLSNLKTVILTNCKTCEHLPPLGKLPFLENLRIWGM 594

Query: 650 KSVKRVGNEFLGI 662
             V++VG EFLG+
Sbjct: 595 DGVQKVGLEFLGL 607

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114824|ref|XP_002332291.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222832453|gb|EEE70930.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  343 bits (880), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 218/542 (40%), Positives = 306/542 (56%), Gaps = 88/542 (16%)

Query: 194 GSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKI 253
           GS+I VTTR  SVA MMG+ ++I++++L++E C S+F  +AF  RS ++RE+L   G KI
Sbjct: 302 GSRILVTTRKHSVATMMGTGHVINLEKLSDEVCRSIFNHVAFQQRSKDERERLTDTGDKI 361

Query: 254 ARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLE-------------------- 293
           A KCKGLPLAAKV+G L++SK T +EW+R+  SE+W + E                    
Sbjct: 362 ANKCKGLPLAAKVLGGLMQSKRTREEWERVFCSELWGLDEVDRDQVERGIFLPLLLSYYD 421

Query: 294 ------------------------------IGQGYLNAKEDEEMEMIGEECFNILAARSF 323
                                         I QGYL      +ME +GE+ F +LAARSF
Sbjct: 422 LPSMVRRCFLYCAMFPKDYEMRKYELVKMWIAQGYLKETSGGDMEAVGEQYFQVLAARSF 481

Query: 324 FQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNF 383
           FQ+FK  D +D+   KMHDIVHDFAQ+++  ECL + +N  +E+ + +  + VRHL +  
Sbjct: 482 FQDFKTYDREDV-RFKMHDIVHDFAQYMTKNECLTVDVNNLREATVETSIERVRHLSMML 540

Query: 384 QRGASFPMSIHRFNRF-------------SILSELFSKLVFLRALR---NWIREIPENVG 427
            +   FP+SIH+                 + L ++F +L  +R+L    + I+EIP  VG
Sbjct: 541 SKETYFPVSIHKAKGLRSLFIDARDPWLGAALPDVFKQLTCIRSLNLSMSLIKEIPNEVG 600

Query: 428 KLIHLKYLNLSE-LRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG 486
           KLIHL++LNL++  ++E +PE +C+L  LQ LD+  C+ L  LP  I KL+ +R L   G
Sbjct: 601 KLIHLRHLNLADCYKLESLPEIMCDLCKLQSLDVTTCRSLWELPKAIGKLIKLRHLRICG 660

Query: 487 TYLLKYMPIGISRLTSLRTLEKFVV-GGGVDGGGTCRLESLKNLQ----LLRKCSIEGLK 541
           + ++ +MP GI R+T LRTL+ F V GGG D      L  LKNL      LR  ++ G  
Sbjct: 661 S-IVAFMPKGIERITCLRTLDWFAVCGGGEDESKAANLRELKNLNHIGGSLRVYNLRG-- 717

Query: 542 GLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEI 601
           GL       E    QL NKK L  L L F  D    R+N+    L+EALQPP ++E L I
Sbjct: 718 GLEGARDAAEA---QLKNKKRLRCLQLYFDFD----RENDI---LIEALQPPSDLEYLTI 767

Query: 602 ESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFL 660
             Y G  FP W+ +LT L+EL L   VN + LPPLG+LP LE L+L+ LK V+R+   F+
Sbjct: 768 SRYGGLDFPNWMMTLTRLQELTLDYYVNLKVLPPLGRLPNLESLELRGLK-VRRLDVGFI 826

Query: 661 GI 662
           GI
Sbjct: 827 GI 828

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482769|ref|XP_003632834.1| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  342 bits (878), Expect = 3e-91,   Method: Compositional matrix adjust.
 Identities = 215/539 (39%), Positives = 307/539 (56%), Gaps = 78/539 (14%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFF-GRSFEDREKL 246
           L +G  GS+I VTTR ESV +MMG+T + S+ +L+ E+  +LF Q+AFF  RS+E  E+L
Sbjct: 279 LTSGAVGSRILVTTRKESVVKMMGTTYMHSLGELSLEQSRALFHQIAFFEKRSWEKEEEL 338

Query: 247 EPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV--------------- 291
           + +G KIA KCKGLPLA K +GNLLR K++ +EW+ +L SE+W++               
Sbjct: 339 KEIGEKIADKCKGLPLAIKTLGNLLRIKNSEEEWKNVLNSEVWQLDEFERDISPALLLSY 398

Query: 292 ------------------------------LEIGQGYLNAKEDEEMEMIGEECFNILAAR 321
                                         L + Q YL +   +EMEM+G   F  LAAR
Sbjct: 399 YDLPPAIQRCFSFCAVFPKDSVIVRAELIKLWMAQSYLKSDGRKEMEMVGRTYFEYLAAR 458

Query: 322 SFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGL 381
           SFFQ+F+K+ D +I+ C+MHDIVHDFAQF++  EC  ++++  K+  ++ F   +RH  L
Sbjct: 459 SFFQDFEKDTDGNIIRCEMHDIVHDFAQFLTQNECFIVEVDNQKKGSMDLFFQKIRHATL 518

Query: 382 NFQRGA-SFPMSIHRFNRFSILS---------ELFSKLVFLRAL----RNWIREIPENVG 427
             +    +F  + +  N  ++L+         E    L  LRAL     +WI E+P+ VG
Sbjct: 519 VVRESTPNFASTCNMKNLHTLLAKEAFDSRVLEALGNLTCLRALDLSSNDWIEELPKEVG 578

Query: 428 KLIHLKYLNLSELR-IERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG 486
           KLIHL+YLNLS    +  +PET+C+LYNLQ L+I GC  L+ LP  + KL+N+R L N  
Sbjct: 579 KLIHLRYLNLSWCESLRELPETICDLYNLQTLNIEGCSSLQKLPHAMGKLINLRHLEN-Y 637

Query: 487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLR-KCSIEGLKGLSN 545
           T  LK +P GI RL+SL+TL+ F+V     G   C++  L+NL  LR + S+E   GL  
Sbjct: 638 TRSLKGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIGDLRNLNNLRGRLSVE---GLDE 692

Query: 546 VSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR 605
           V    E E+ +L N+ +   L L+FG       + E  K + EALQP  N++ L I  Y 
Sbjct: 693 VKDAGEPEKAELKNRVHFQYLTLEFG-------EKEGTKGVAEALQPHPNLKSLGIVDYG 745

Query: 606 GNIFPKWL--TSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG 661
              +P W+  +SL  L+ L L  C  C  LPPLG+LP LEKL +  +  VK +G+EFLG
Sbjct: 746 DREWPNWMMGSSLAQLKILHLWFCKRCPCLPPLGQLPVLEKLYIWGMDGVKYIGSEFLG 804

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224101679|ref|XP_002334255.1| nbs-lrr resistance protein [Populus trichocarpa] gi|222870330|gb|EEF07461.1| nbs-lrr resistance protein [Populus trichocarpa]

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 255/687 (37%), Positives = 383/687 (55%), Gaps = 79/687 (11%)

Query: 1   VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVD 60
           VRL  GV  EV+KLT +  AI+AV  DA++RQ++ D+ V  WLDQLKD S DM+D+  +D
Sbjct: 25  VRLFVGVKNEVEKLTSSFRAIQAVFADAEERQLK-DQFVKHWLDQLKDVSYDMDDV--LD 81

Query: 61  D-DNALA--LAPHKKKVRSFFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDR 117
           + D A+A   + + +KV SF   + +CF  F+++ LRH +A KI+E++E++D I   K+R
Sbjct: 82  EWDTAIAKLQSKNTRKVCSFM--IFSCF-HFREVGLRHRVAYKIKELNERIDGIVVEKNR 138

Query: 118 FKFVENVSNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVG 177
           F F + +   +K+ E   T S+ID  EV GR  +K  ++  LL ESS Q   L  ISLVG
Sbjct: 139 FHF-KLLEAGIKQLEHHETASVIDVKEVKGREKDKVRVIKTLLSESS-QGPALRTISLVG 196

Query: 178 LGGIEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNI-ISIKQLAEEECWSLFKQLAFF 236
           +GGI    L          +F    N+ V +   +  I + +    +E    + K++   
Sbjct: 197 MGGIGKTTL-------AKLVF----NDHVVKTHFNRRIWVCVSDPFDET--RIAKEILEA 243

Query: 237 GRSFEDREKLEPMGRKIARKCKGLPLAAKVI-GNLLRSKSTVKEWQRILESEMWKVLEIG 295
             S+ D   L    R+    C   P       G+L++               +W    + 
Sbjct: 244 HMSYHD---LPSEVRRCFSYCAVFPKDFTFYRGDLIK---------------LW----MA 281

Query: 296 QGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKND-DDDIMSCKMHDIVHDFAQFVSSK 354
           QG+L   +++EME++G ECF  LAARSFFQ+FKK + DD I +CKMHD+VHDFAQF++  
Sbjct: 282 QGFLRETQNKEMEVMGRECFEALAARSFFQDFKKEEGDDSIYACKMHDMVHDFAQFLTKN 341

Query: 355 ECLWLQINGTKESVINSFGDNVRH--LGLNFQRGASFPMSIHRFNRF------------- 399
           E   ++I+G  ES I+SF  + RH  + L   +  SFP +IH   +              
Sbjct: 342 ESFNVEIDGAAESKIDSFSRDARHSMVVLRKYKTYSFPETIHSLKKLRSLIVDGYPSSMN 401

Query: 400 SILSELFSKLVFLRALR---NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQ 456
           + L  L + L  LR LR     I E+P N+GKLIHL++++LS   I  +PE +CELYN+ 
Sbjct: 402 ATLPNLIANLSCLRTLRLSRCGIEEVPSNIGKLIHLRHVDLSGNLIRELPEEMCELYNML 461

Query: 457 KLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD 516
            LD+  C+ L  LP  + KL+ +R  L+ G   +K    G+  L+SLR L++F V G  +
Sbjct: 462 TLDVSDCEKLERLPDNMEKLVKLRH-LSVGRLFVKMR--GVEGLSSLRELDEFHVSGSGE 518

Query: 517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG 576
                 L +L +LQ   K     ++ L +V   DEV++  L +K++L  L L F   I+ 
Sbjct: 519 VSNFGDLRNLNHLQGSLK-----IRWLGDVKDPDEVKKALLKSKEHLTCLRLWFESRID- 572

Query: 577 RRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPL 636
            +    D ++LEAL+PP N+E LEI  YRG I P + + +  LR ++LS     E+LPPL
Sbjct: 573 -KGTIHDDEVLEALEPPPNLEFLEIRYYRG-IDPVFSSCINKLRVVELSEWGKIENLPPL 630

Query: 637 GKLP-LEKLQLKNLKSVKRVGNEFLGI 662
           GKLP LE+L +  ++ VK++G+EFLG+
Sbjct: 631 GKLPSLEELTISWMECVKKMGDEFLGL 657

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482792|ref|XP_002268589.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  341 bits (874), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 217/538 (40%), Positives = 308/538 (57%), Gaps = 78/538 (14%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLE 247
           L  G  GS+I  TTR ESV +M+G+T   S+++L+ E+  +LF Q+AFF +S E  E+L 
Sbjct: 299 LNCGGVGSRILATTRKESVVKMVGTTYTHSLEELSREQARALFHQIAFFEKSREKVEELN 358

Query: 248 PMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV---------------- 291
            +G  IA KCKGLPLA K +GNL+RSK   +EW+ +L SE+W +                
Sbjct: 359 EIGENIADKCKGLPLAIKTLGNLMRSKHNREEWENVLCSEVWHLDEFERDISPALLLSYH 418

Query: 292 -----------------------------LEIGQGYLNAKEDEEMEMIGEECFNILAARS 322
                                        L + Q YL +   +EMEM+G   F  LAARS
Sbjct: 419 DLPPAIQRCFSFCAVFPKDSVIVRAELIKLWMAQSYLKSDGCKEMEMVGRTYFEYLAARS 478

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLN 382
           FFQ+F+K+DD +I+ CKMHDIVHDFAQF++  EC  ++++  K+  ++ F   +RH  L 
Sbjct: 479 FFQDFEKDDDGNIIRCKMHDIVHDFAQFLTQNECFIVEVDNQKKGSMDLFFQKIRHATLV 538

Query: 383 FQRGA-SFPMSIHRFNRFSILS---------ELFSKLVFLRAL---RN-WIREIPENVGK 428
            +    +F  + +  N  ++L+         E    L  LRAL   RN  I E+P+ VGK
Sbjct: 539 VRESTPNFASTCNMKNLHTLLAKKAFDSRVLEALGNLTCLRALDLSRNRLIEELPKEVGK 598

Query: 429 LIHLKYLNLSE-LRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT 487
           LIHL+YLNLS    +  +PET+C+LYNLQ L+I+GC  +R LP  + KL+N+R L N  T
Sbjct: 599 LIHLRYLNLSLCYSLRELPETICDLYNLQTLNIQGC-IIRKLPQAMGKLINLRHLENYNT 657

Query: 488 YLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLR-KCSIEGLKGLSNV 546
             LK +P GI RL+SL+TL+ F+V     G   C++  L+NL  LR + SI+   GL  V
Sbjct: 658 R-LKGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIGDLRNLNNLRGRLSIQ---GLDEV 711

Query: 547 SHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG 606
               E E+ +L NK  L RL L+FGG+       E  K + EALQP  N++ L+I +Y  
Sbjct: 712 KDAGEAEKAELKNKVYLQRLELKFGGE-------EGTKGVAEALQPHPNLKSLDIFNYGD 764

Query: 607 NIFPKWL--TSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG 661
             +P W+  +SL  L+ L L  C+ C  LPPLG+LP LE+L + N+  V+ +G+EFLG
Sbjct: 765 REWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQLPILEELGILNMHGVQYIGSEFLG 822

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134406|ref|XP_002321815.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222868811|gb|EEF05942.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 232/610 (38%), Positives = 328/610 (53%), Gaps = 77/610 (12%)

Query: 108 LDEIAARKDRFK--FVENVSNSVKKPERERTISLIDEGEVCGRVDEKNEL--LSKLLCES 163
           L ++A   D  K  F + +   V  P  E T++     ++ G      EL  L K + ES
Sbjct: 239 LAQLAYNADEIKTYFEKRIWVCVSHPFDENTVAKAIIEDLSGAAPNLVELEPLCKRISES 298

Query: 164 SEQQKGLHVISLVGLGG---IEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ 220
            E +K L V+  V        EP    LK G  GS+I VTTR ++VA+MM S   + + +
Sbjct: 299 IEGKKFLLVLDDVWEDNPRKWEPLKESLKCGAPGSRILVTTRKDTVAKMMESDYSLLLGK 358

Query: 221 LAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEW 280
           L +EECWS+F Q+AF+GRS +  E    +GR+I  +CKGLPLAAK +G L++SK+T ++W
Sbjct: 359 LTDEECWSVFSQVAFYGRSQDACEMFTEIGRQIVYRCKGLPLAAKTLGGLMQSKTTTEDW 418

Query: 281 QRILESEMWKVLEI---------------------------------------------G 295
             IL +E+W++ E+                                              
Sbjct: 419 DNILSNELWEIEEVEKGIFPPLLLSYYDLPVAIRSCFTYCAMFPKDHVMERGKLIKMWMA 478

Query: 296 QGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKE 355
           QGYL A   +EME++G+  F ILA R+FFQ+F++ D+D I   KMHDIVHDFAQF+   E
Sbjct: 479 QGYLKASPSKEMELVGKGYFEILATRAFFQDFQETDEDSI-KFKMHDIVHDFAQFLMKDE 537

Query: 356 CLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHR-----------FNRFSI--- 401
           C  ++ +  K     SF +  RH  +     A FP SI++           FN  +I   
Sbjct: 538 CFTVETDVLKRQKTESFYERARHAIMTVSNWARFPQSIYKAGKLRSLLIRSFNDTAISKP 597

Query: 402 LSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELR-IERIPETLCELYNLQK 457
           L EL  KL +LR      + I EIP +VGKL+HL+YL+ S  + ++ +PET+ +LYNLQ 
Sbjct: 598 LLELLRKLTYLRLFDLSASQIEEIPSDVGKLLHLRYLDFSYCKWLKELPETISDLYNLQS 657

Query: 458 LDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDG 517
           LD+  C  L+ LP  +RKL+ +R L   G+ +  ++P GI  LTSLRTL  F+V GG   
Sbjct: 658 LDLTWCVALKKLPQKMRKLIRLRHLEIFGSGV-AFLPRGIEELTSLRTLTNFIVSGGGGQ 716

Query: 518 GGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGR 577
            G   L  L NL  LR      ++ L NV  V+E  + ++  KK L+ L L F  D    
Sbjct: 717 SGAANLGELGNLSHLR--GTLWIEKLLNVRDVNEAVKAEIKKKKYLIGLYLLFNRDETDL 774

Query: 578 RKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLG 637
           R +E    L+EALQPP N++ L I  +RG + PKW+ SLT LR L +S C + E LPP G
Sbjct: 775 RVDEN--ALVEALQPPSNLQVLCISEFRGTLLPKWIMSLTKLRGLDISHCGSFEVLPPFG 832

Query: 638 KLP-LEKLQL 646
           +LP LEKL++
Sbjct: 833 RLPYLEKLKI 842

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482790|ref|XP_002268671.2| PREDICTED: putative disease resistance protein RGA4-like [Vitis vinifera]

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 214/544 (39%), Positives = 309/544 (56%), Gaps = 81/544 (14%)

Query: 187 RLKNGLH----GSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRS-FE 241
           +LKN LH    GS+I  TTR ESV +MM +T    + +L+ E+  +LF Q+AF+ RS +E
Sbjct: 294 QLKNTLHCGAAGSRILATTRKESVVKMMRATYKHPLGELSSEQSRALFHQIAFYERSTWE 353

Query: 242 DREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV---------- 291
             E+L+ +G KIA KCKGLPLA K +GNLLR K++ +EW+ +L SE+W++          
Sbjct: 354 KEEELKEIGEKIADKCKGLPLAIKTLGNLLRIKNSEEEWKNVLNSEVWQLDEFERDISPA 413

Query: 292 -----------------------------------LEIGQGYLNAKEDEEMEMIGEECFN 316
                                              L + Q YL +   +EMEM+G   F 
Sbjct: 414 LLLSYYDLPPAIQRCFSFCAVFPKDSVIERDELIKLWMAQSYLKSDGSKEMEMVGRTYFE 473

Query: 317 ILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNV 376
            LAARSFFQ+F+K+DD +I+ CKMHDIVHDFAQF++  EC  ++++  K+  ++ F   +
Sbjct: 474 YLAARSFFQDFEKDDDGNIIHCKMHDIVHDFAQFLTLNECFIVEVDNQKKGSMDLFFQKI 533

Query: 377 RHLGLNFQRGA-SFPMSIHRFNRFSILS---------ELFSKLVFLRAL----RNWIREI 422
           RH  L  +    +F  + +  N  ++L+         E    L  LRAL       I E+
Sbjct: 534 RHATLVVRESTPNFASTCNMKNLHTLLAKRAFDSRVLEALGHLTCLRALDLRSNQLIEEL 593

Query: 423 PENVGKLIHLKYLNLSEL-RIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRS 481
           P+ VGKLIHL+YLNLS    +  +PET+C+LYNLQ L+I+ C  L+ LP  + KL+N+R 
Sbjct: 594 PKEVGKLIHLRYLNLSYCDSLRELPETICDLYNLQTLNIQACSRLQKLPQAMGKLINLRH 653

Query: 482 LLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLR-KCSIEGL 540
           L N     L+ +P GI RL+SL+TL+ F+V     G   C++E L+NL  LR + SI+  
Sbjct: 654 LENYDADDLQGLPKGIGRLSSLQTLDVFIVSS--HGNDECQIEDLRNLNNLRGRLSIQ-- 709

Query: 541 KGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE 600
            GL  V    E E+ +L N+ +L RL L+FGG+       E  K + EALQP  N++ L 
Sbjct: 710 -GLDEVKDAGEAEKAELQNRVHLQRLTLEFGGE-------EGTKGVAEALQPHPNLKFLC 761

Query: 601 IESYRGNIFPKWL--TSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGN 657
           I  Y    +P W+  +SL  L+ L L  C+ C  LPPLG+LP LE+L +  +  +K +G+
Sbjct: 762 IIRYGDREWPNWMMGSSLAQLKILHLRFCIRCPCLPPLGQLPVLEELGICFMYGLKYIGS 821

Query: 658 EFLG 661
           EFLG
Sbjct: 822 EFLG 825

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122712|ref|XP_002318907.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222859580|gb|EEE97127.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 214/541 (39%), Positives = 303/541 (56%), Gaps = 81/541 (14%)

Query: 194 GSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKI 253
           GS+I VTTR ++VA MMG+ + I+I++L++E C S+F  +AF  RS ++RE+L  +G KI
Sbjct: 306 GSRILVTTRKDAVATMMGTDHRINIEKLSDEICRSIFNHVAFQERSEDERERLTDIGDKI 365

Query: 254 ARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEI------------------- 294
           A KCKGLPLAAKV+G L++SK T +EW+R+L SE+W++ E+                   
Sbjct: 366 ANKCKGLPLAAKVLGGLMQSKRTREEWERVLSSELWRLDEVDRDQVESRIFIPLLLSYYD 425

Query: 295 -------------------------------GQGYLNAKEDEEMEMIGEECFNILAARSF 323
                                           QGY+      +ME++GE  F++LAARSF
Sbjct: 426 LPSVVRRCFLYCAMFPKDYEMGKYELVKMWMAQGYIKETSGGDMELVGERYFHVLAARSF 485

Query: 324 FQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNF 383
           FQ+F+  D  + M  KMHDIVHDFAQ+++  ECL + +N    + + +  + VRHL +  
Sbjct: 486 FQDFE-TDIFEGMKFKMHDIVHDFAQYMTKNECLTVDVNTLGGATVETSIERVRHLSMMV 544

Query: 384 QRGASFPMSIHRFNRF-------------SILSELFSKLVFLRALR---NWIREIPENVG 427
               SFP+SIH+                 + L +LF +L  +R+L    + I+EIP  VG
Sbjct: 545 SEETSFPVSIHKAKGLRSLLIDTRDPSLGAALPDLFKQLTCIRSLNLSASSIKEIPNEVG 604

Query: 428 KLIHLKYLNLSEL-RIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL--LN 484
           KLIHL+++NL+    +E +PET+C+L NLQ LD+  C+ L+ LP  I KL+ +R L    
Sbjct: 605 KLIHLRHVNLARCGELESLPETMCDLCNLQSLDVTWCRSLKELPNAIGKLIKLRHLRIYR 664

Query: 485 DGTYLLKYMPIGISRLTSLRTLEKF-VVGGGVDGGGTCRLESLKNLQLLR-KCSIEGLKG 542
            G   + ++P GI R+T LRTL+ F V GGG +      L  LKNL  +    +I  L G
Sbjct: 665 SG---VDFIPKGIERITCLRTLDVFKVCGGGENESKAANLRELKNLNHIGGSLNIRNLGG 721

Query: 543 LSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIE 602
              +    +    QL NKK L RL L F  D E       +  L+EALQPP N+E L I 
Sbjct: 722 --GIEDASDAAEAQLKNKKRLRRLELVF--DREKTELQANEGSLIEALQPPSNLEYLTIS 777

Query: 603 SYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG 661
           SY G   P W+ +LT L  L+L  C   E LPPLG+LP LE+L L++LK V+R+   FLG
Sbjct: 778 SYGGFDLPNWMMTLTRLLALELHDCTKLEVLPPLGRLPNLERLALRSLK-VRRLDAGFLG 836

Query: 662 I 662
           I
Sbjct: 837 I 837

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	662
TAIR|locus:2091672	1054	AT3G14470 [Arabidopsis thalian	0.351	0.221	0.305	2.5e-39
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.336	0.156	0.327	2.7e-32
TAIR|locus:2078012	852	ZAR1 "HOPZ-ACTIVATED RESISTANC	0.462	0.359	0.283	4.1e-27
TAIR|locus:2077572	926	RPM1 "RESISTANCE TO P. SYRINGA	0.158	0.113	0.345	3.2e-20
TAIR|locus:2011982	857	AT1G50180 [Arabidopsis thalian	0.140	0.108	0.412	1.4e-18
TAIR|locus:2037623	899	AT1G58410 [Arabidopsis thalian	0.152	0.112	0.387	1.9e-17
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.163	0.059	0.379	2e-17
TAIR|locus:504956184	1017	AT1G58807 "AT1G58807" [Arabido	0.152	0.099	0.369	6.9e-17
TAIR|locus:2827038	1017	AT1G59124 "AT1G59124" [Arabido	0.152	0.099	0.369	6.9e-17
TAIR|locus:2176486	908	RPP8 "RECOGNITION OF PERONOSPO	0.140	0.102	0.381	4.5e-16

TAIR|locus:2091672 AT3G14470 [Arabidopsis thaliana (taxid:3702)]

 Score = 232 (86.7 bits), Expect = 2.5e-39, Sum P(3) = 2.5e-39
 Identities = 79/259 (30%), Positives = 128/259 (49%)

Query:   390 PMSIHRFNRFSILSELFSK-----LVFLR--ALRNW-IREIPENVGKLI-HLKYLNLSEL 440
             P+S+   +R   L ++ S+     L  LR  +L ++ I  +P +  K I H ++L+LS  
Sbjct:   553 PLSLTNSSRSCCLDQMVSEKLLPTLTRLRVLSLSHYKIARLPPDFFKNISHARFLDLSRT 612

Query:   441 RIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRL 500
              +E++P++LC +YNLQ L +  C  L+ LP  I  L+N+R L   GT L + MP    RL
Sbjct:   613 ELEKLPKSLCYMYNLQTLLLSYCSSLKELPTDISNLINLRYLDLIGTKL-RQMPRRFGRL 671

Query:   501 TSLRTLEKFXXXXXXXXXXTCRLESLKNLQLLR-KCSIEGLKGLSNVSHVDEVERLQLYN 559
              SL+TL  F            R+  L  L  L  K  I  L+ + +V+   E     L +
Sbjct:   672 KSLQTLTTFFVSASDGS----RISELGGLHDLHGKLKIVELQRVVDVADAAEAN---LNS 724

Query:   560 KKNLL------RLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL 613
             KK+L       R G     +     + + + ++ E L+P  ++E+L IE Y+G  FP WL
Sbjct:   725 KKHLREIDFVWRTGSSSSENNTNPHRTQNEAEVFEKLRPHRHIEKLAIERYKGRRFPDWL 784

Query:   614 T--SLTNLRELKLSLCVNC 630
             +  S + +  ++L  C  C
Sbjct:   785 SDPSFSRIVCIRLRECQYC 803

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.7e-32, Sum P(3) = 2.7e-32
 Identities = 79/241 (32%), Positives = 123/241 (51%)

Query:   401 ILSELFSKLVFLR--ALRNW-IREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQK 457
             +L+ L + L  LR  +L ++ I  +P+++  L  L+YL+LS  +I+ +PE +C L NLQ 
Sbjct:   564 VLNPLLNALSGLRILSLSHYQITNLPKSLKGLKLLRYLDLSSTKIKELPEFVCTLCNLQT 623

Query:   458 LDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFXXXXXXXX 517
             L +  C+ L  LP  I +L+N+R L   GT L++ MP GI +L SL+ L  F        
Sbjct:   624 LLLSNCRDLTSLPKSIAELINLRLLDLVGTPLVE-MPPGIKKLRSLQKLSNFVIGRLSGA 682

Query:   518 XXTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL----LRLGLQFGGD 573
                  L  LK L  LR  ++  +  L NV+   E +   L  K  L    L+  ++  G 
Sbjct:   683 G----LHELKELSHLRG-TLR-ISELQNVAFASEAKDAGLKRKPFLDGLILKWTVKGSGF 736

Query:   574 IEGRRKNEK--DKQLLEALQPPLNVEELEIESYRGNIFPKWL--TSLTNLRELKLSLCVN 629
             + G         K++L  L+P  +++   IESY+G  FPKWL  +S   +  + LS C  
Sbjct:   737 VPGSFNALACDQKEVLRMLEPHPHLKTFCIESYQGGAFPKWLGDSSFFGITSVTLSSCNL 796

Query:   630 C 630
             C
Sbjct:   797 C 797

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2078012 ZAR1 "HOPZ-ACTIVATED RESISTANCE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 4.1e-27, Sum P(3) = 4.1e-27
 Identities = 102/360 (28%), Positives = 156/360 (43%)

Query:   294 IGQGYLNAKXXXXXXXXXXXCFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSS 353
             IG+G++  +           CF+ L  R   +   K     I++CK+HD+V D       
Sbjct:   441 IGEGFVMWRNGRSATESGEDCFSGLTNRCLIEVVDKTYSGTIITCKIHDMVRD------- 493

Query:   354 KECLWLQINGTKESVINSFGDNVRHLGL--NFQ----------RGASFPMSIHRFNRF-S 400
                L + I   K+S  N  G N RHLG+  NF           RG          N+  S
Sbjct:   494 ---LVIDI-AKKDSFSNPEGLNCRHLGISGNFDEKQIKVNHKLRGVVSTTKTGEVNKLNS 549

Query:   401 ILSELFSKLVFLRAL---RNW----IREIPENVGKLIHLKYLNLSELR-IERIPETLCEL 452
              L++ F+   +LR L   ++     + EI + +  L HL  L+LS    + + P ++ +L
Sbjct:   550 DLAKKFTDCKYLRVLDISKSIFDAPLSEILDEIASLQHLACLSLSNTHPLIQFPRSMEDL 609

Query:   453 YNLQKLDIRGCQYLRGLPAGI---RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF 509
             +NLQ LD   CQ L+ L   I   +KL+ +  + N G+  L+  P GI  L  L  L  F
Sbjct:   610 HNLQILDASYCQNLKQLQPCIVLFKKLLVL-DMTNCGS--LECFPKGIGSLVKLEVLLGF 666

Query:   510 XXXXXXXXXXTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQ 569
                        C+L  +KNL  LRK  +   +G      ++E E   L N   L+ + + 
Sbjct:   667 KPARSNNG---CKLSEVKNLTNLRKLGLSLTRG----DQIEEEELDSLINLSKLMSISIN 719

Query:   570 FGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLT--SLTNLRELKLSLC 627
                D  G     K    ++AL PP  + EL ++ Y G   P WL+   L  LR +  S+C
Sbjct:   720 CY-DSYGDDLITK----IDALTPPHQLHELSLQFYPGKSSPSWLSPHKLPMLRYM--SIC 772

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2077572 RPM1 "RESISTANCE TO P. SYRINGAE PV MACULICOLA 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 3.2e-20, Sum P(3) = 3.2e-20
 Identities = 38/110 (34%), Positives = 67/110 (60%)

Query:   186 LRLKNGLHGSKIFVTTRNESVARM---MGSTNIISIKQLAEEECWSLFKQLAFFGRSFED 242
             + L +G++GS++ +TTR+ +VA     +GST    I+ L E+E W LF   AF     + 
Sbjct:   299 IALPDGIYGSRVMMTTRDMNVASFPYGIGSTKH-EIELLKEDEAWVLFSNKAFPASLEQC 357

Query:   243 R-EKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV 291
             R + LEP+ RK+  +C+GLPLA   +G+++ +K    EW+++  +  W++
Sbjct:   358 RTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWEL 407

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009626 "plant-type hypersensitive response" evidence=IDA

TAIR|locus:2011982 AT1G50180 [Arabidopsis thaliana (taxid:3702)]

 Score = 179 (68.1 bits), Expect = 1.4e-18, Sum P(3) = 1.4e-18
 Identities = 40/97 (41%), Positives = 60/97 (61%)

Query:   194 GSKIFVTTRNESVARMMGSTNIISIKQLAE-EECWSLFKQLAFFGR-SFEDR--EKLEPM 249
             GS+I +TTRN+ VA       ++   QL   EE W L ++++  GR + E    +K+E +
Sbjct:   295 GSEIILTTRNKEVALYADPRGVLHEPQLLTCEESWELLEKISLSGRENIEPMLVKKMEEI 354

Query:   250 GRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES 286
             G++I  +C GLPLA  V+G LL +KST  EWQR+ E+
Sbjct:   355 GKQIVVRCGGLPLAITVLGGLLATKSTWNEWQRVCEN 391

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2037623 AT1G58410 [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.9e-17, Sum P(3) = 1.9e-17
 Identities = 43/111 (38%), Positives = 67/111 (60%)

Query:   181 IEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAFFGR 238
             I+P F   K    G K+ +T+R ES+A M G T  IS K   L+  + W+LF+ +A   +
Sbjct:   283 IKPIFPPKK----GWKVLLTSRTESIA-MRGDTTYISFKPKCLSIPDSWTLFQSIAMPRK 337

Query:   239 S---FEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES 286
                 F+  E++E MG+K+ + C GL LA KV+G LL +K T+ +W+R+ E+
Sbjct:   338 DTSEFKVDEEMENMGKKMIKHCGGLSLAVKVLGGLLAAKYTLHDWKRLSEN 388

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 212 (79.7 bits), Expect = 2.0e-17, Sum P(3) = 2.0e-17
 Identities = 41/108 (37%), Positives = 67/108 (62%)

Query:   194 GSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKI 253
             G+ I +TTR +S+A+ +G+   I ++ L +++ WSLFK  AF     +    L+ +G++I
Sbjct:   438 GNMIILTTRIQSIAKSLGTVQSIKLEALKDDDIWSLFKVHAFGNDKHDSSPGLQVLGKQI 497

Query:   254 ARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNA 301
             A + KG PLAAK +G+LL +  T+  W  I++SE WK L+   G + A
Sbjct:   498 ASELKGNPLAAKTVGSLLGTNLTIDHWDSIIKSEEWKSLQQAYGIMQA 545

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:504956184 AT1G58807 "AT1G58807" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
 Identities = 41/111 (36%), Positives = 66/111 (59%)

Query:   181 IEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAF--- 235
             I+P F   K    G K+ +T+RNESVA M  +T+ I+ K   L  E+ W+LF+++A    
Sbjct:   284 IKPIFPPTK----GWKVLLTSRNESVA-MRRNTSYINFKPECLTTEDSWTLFQRIALPMK 338

Query:   236 FGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES 286
                 F+  E+ E +G+ + + C GLPLA +V+G +L  K T  +W+R+ E+
Sbjct:   339 DAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSEN 389

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827038 AT1G59124 "AT1G59124" [Arabidopsis thaliana (taxid:3702)]

 Score = 166 (63.5 bits), Expect = 6.9e-17, Sum P(3) = 6.9e-17
 Identities = 41/111 (36%), Positives = 66/111 (59%)

Query:   181 IEPFFLRLKNGLHGSKIFVTTRNESVARMMGSTNIISIKQ--LAEEECWSLFKQLAF--- 235
             I+P F   K    G K+ +T+RNESVA M  +T+ I+ K   L  E+ W+LF+++A    
Sbjct:   284 IKPIFPPTK----GWKVLLTSRNESVA-MRRNTSYINFKPECLTTEDSWTLFQRIALPMK 338

Query:   236 FGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES 286
                 F+  E+ E +G+ + + C GLPLA +V+G +L  K T  +W+R+ E+
Sbjct:   339 DAAEFKIDEEKEELGKLMIKHCGGLPLAIRVLGGMLAEKYTSHDWRRLSEN 389

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2176486 RPP8 "RECOGNITION OF PERONOSPORA PARASITICA 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 4.5e-16, Sum P(4) = 4.5e-16
 Identities = 37/97 (38%), Positives = 55/97 (56%)

Query:   194 GSKIFVTTRNESVARMMGSTNI-ISIKQLAEEECWSLFKQLAFFGRS-FEDR--EKLEPM 249
             G K+ +T+RNE V      T +      L  EE W L +++ F  R   E R  E++E M
Sbjct:   293 GWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEMEAM 352

Query:   250 GRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES 286
             G+++   C GLPLA K +G LL +K TV EW+R+ ++
Sbjct:   353 GKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDN 389

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0043531 "ADP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051707 "response to other organism" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	662
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	4e-23
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	9e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.004

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score = 99.7 bits (249), Expect = 4e-23
 Identities = 53/134 (39%), Positives = 71/134 (52%), Gaps = 10/134 (7%)

Query: 194 GSKIFVTTRNESVARMMGSTN-IISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRK 252
           GS++ VTTR+ESVA  MG T+    ++ L  EE W LF    F        E LE + ++
Sbjct: 128 GSRVIVTTRSESVAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPE-LEEVAKE 186

Query: 253 IARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKVLEIGQGYLNAKED------EE 306
           I  KCKGLPLA KV+G LL  KSTV+EW+ +LE    +    G+  LN          + 
Sbjct: 187 IVEKCKGLPLALKVLGGLLAFKSTVQEWEHVLEQLNNE--LAGRDGLNEVLSILSLSYDN 244

Query: 307 MEMIGEECFNILAA 320
           + M  + CF  LA 
Sbjct: 245 LPMHLKRCFLYLAL 258

Length = 285

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 9e-05
 Identities = 33/120 (27%), Positives = 54/120 (45%), Gaps = 2/120 (1%)

Query: 391 MSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLC 450
           +S ++ +      EL S L  L    N I E+  ++  L +L  L LS  ++E +PE++ 
Sbjct: 193 LSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG 252

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV 510
            L NL+ LD+   Q      + +  L N+R L   G  L   +P+    L  L  L   +
Sbjct: 253 NLSNLETLDLSNNQISS--ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLL 310

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.003
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 416 RNWIREIPENV-GKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQ 464
            N +  IP+     L +LK L+LS   +  I PE    L +L+ LD+ G  
Sbjct: 9   NNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 1/74 (1%)

Query: 422 IPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMR 480
           IP ++ KL HL+ +NLS   I   IP +L  + +L+ LD+    +   +P  + +L ++R
Sbjct: 434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493

Query: 481 SLLNDGTYLLKYMP 494
            L  +G  L   +P
Sbjct: 494 ILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.004
 Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 4/137 (2%)

Query: 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRK 475
            N I  +P  +  L +LK L+LS   +  +P+ L  L NL  LD+ G + +  LP  I  
Sbjct: 149 DNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNK-ISDLPPEIEL 207

Query: 476 LMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRK- 534
           L  +  L      +++ +   +S L +L  LE               L +L+ L L    
Sbjct: 208 LSALEELDLSNNSIIE-LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ 266

Query: 535 -CSIEGLKGLSNVSHVD 550
             SI  L  L+N+  +D
Sbjct: 267 ISSISSLGSLTNLRELD 283

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	662
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	99.74
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.66
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.65
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.64
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.57
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.43
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.38
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.33
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.27
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.23
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.14
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.12
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.11
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.11
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.96
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.84
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.59
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.55
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.52
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.4
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.22
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.22
PRK15386	426	type III secretion protein GogB; Provisional	98.19
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.13
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.05
PLN03150	623	hypothetical protein; Provisional	97.96
PLN03150	623	hypothetical protein; Provisional	97.86
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.85
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.71
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.63
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.5
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.45
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.44
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.39
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.06
PRK15386	426	type III secretion protein GogB; Provisional	97.06
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.05
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	96.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.6
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	96.5
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.47
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.38
PF12061	402	DUF3542: Protein of unknown function (DUF3542); In	96.15
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.08
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.48
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	95.45
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.67
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	94.67
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	94.59
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.46
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	93.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.86
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.69
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.66
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	92.35
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	92.35
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	91.16
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.1
smart00370	26	LRR Leucine-rich repeats, outliers.	90.1
KOG2123	388	consensus Uncharacterized conserved protein [Funct	89.82
PRK04841	903	transcriptional regulator MalT; Provisional	89.81
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.41
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	86.18
KOG0473	326	consensus Leucine-rich repeat protein [Function un	84.64
smart00370	26	LRR Leucine-rich repeats, outliers.	83.96
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.96
PRK00411	394	cdc6 cell division control protein 6; Reviewed	83.8
KOG1947	482	consensus Leucine rich repeat proteins, some prote	82.88
KOG4341	483	consensus F-box protein containing LRR [General fu	81.82
PRK06893	229	DNA replication initiation factor; Validated	80.99

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=7.8e-59  Score=520.20  Aligned_cols=602  Identities=24%  Similarity=0.310  Sum_probs=410.1

Q ss_pred             cccChHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHHHHHHHHHHhccccccccchhhhhhhhhccccccccCccccccc
Q 044550            3 LVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVS   82 (662)
Q Consensus         3 l~~~v~~~~~~l~~~L~~i~a~L~~a~~~~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~~~~~~~~~~~~~~   82 (662)
                      .+.|+++.+..|+++|..++.+++||++++.. ...+..|...+++++|++||.  ++.|.......+..+.-.......
T Consensus        22 ~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~-~~~~~~~~e~~~~~~~~~e~~--~~~~~v~~~~~~~~~~l~~~~~~~   98 (889)
T KOG4658|consen   22 CLDGKDNYILELKENLKALQSALEDLDAKRDD-LERRVNWEEDVGDLVYLAEDI--IWLFLVEEIERKANDLLSTRSVER   98 (889)
T ss_pred             HHhchHHHHHHHHHHHHHHHHHHHHHHhhcch-HHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhHHhhhhHHHH
Confidence            46788999999999999999999999999887 889999999999999999999  999998876653221100000122


Q ss_pred             cccccccchhhhHHHHHHHHHHHHHHHHHHHhcccCCceecc---CCCCCCCCCCCccccccCCceecccchHHHHHHHH
Q 044550           83 NCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENV---SNSVKKPERERTISLIDEGEVCGRVDEKNELLSKL  159 (662)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L  159 (662)
                      +.+ |  -..++++.+..+..+.+++..+......|......   +........+++.+...+.. ||.+..++++++.|
T Consensus        99 ~~~-c--~~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~kl~~~L  174 (889)
T KOG4658|consen   99 QRL-C--LCGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEKLWNRL  174 (889)
T ss_pred             HHH-h--hhhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHHHHHHh
Confidence            222 1  12567788888888888888887777777644322   11122233455566665656 99999999999999


Q ss_pred             hccCccCCCCeEEEEEecCCCc-----------------ccch-------------------------------------
Q 044550          160 LCESSEQQKGLHVISLVGLGGI-----------------EPFF-------------------------------------  185 (662)
Q Consensus       160 ~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~-------------------------------------  185 (662)
                      +.++.      .++||+||||+                 ++||                                     
T Consensus       175 ~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~  248 (889)
T KOG4658|consen  175 MEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWEDKEED  248 (889)
T ss_pred             ccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccchhhHH
Confidence            97653      89999999999                 3344                                     


Q ss_pred             --------------------------------hhhhcCCCCceEEEEcccHHHHhh-hCCCCeeeCCCCChHHHHHHHHH
Q 044550          186 --------------------------------LRLKNGLHGSKIFVTTRNESVARM-MGSTNIISIKQLAEEECWSLFKQ  232 (662)
Q Consensus       186 --------------------------------~~l~~~~~gSrIivTTR~~~v~~~-~~~~~~~~l~~L~~~~s~~Lf~~  232 (662)
                                                      .++|....||||++|||++.||.. |++...++++.|..+|||.||++
T Consensus       249 ~~~~~i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~  328 (889)
T KOG4658|consen  249 ELASKLLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQK  328 (889)
T ss_pred             HHHHHHHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHH
Confidence                                            778888899999999999999999 88889999999999999999999


Q ss_pred             HhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhhhh-------hh------------
Q 044550          233 LAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWKV-------LE------------  293 (662)
Q Consensus       233 ~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~~~-------~~------------  293 (662)
                      +||.... ...+.++++|++|+++|+|+|||++++|+.|+.|++..+|+++.+...+.+       .+            
T Consensus       329 ~v~~~~~-~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~  407 (889)
T KOG4658|consen  329 KVGPNTL-GSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDN  407 (889)
T ss_pred             hhccccc-cccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhh
Confidence            9997644 233459999999999999999999999999999999999999987543331       00            


Q ss_pred             ------------------------------hhcCcccCCC-CchHHHHHHHHHHHHHhcCcccccccCCCCCeeeEEcCh
Q 044550          294 ------------------------------IGQGYLNAKE-DEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHD  342 (662)
Q Consensus       294 ------------------------------iaeg~i~~~~-~~~~~~~~~~~~~~L~~rsli~~~~~~~~~~~~~~~mHd  342 (662)
                                                    |||||+.+.+ +.++++.|..|+.+|++++|++.....  ++..+|+|||
T Consensus       408 L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHD  485 (889)
T KOG4658|consen  408 LPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHD  485 (889)
T ss_pred             hhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeH
Confidence                                          9999999854 889999999999999999999987754  6778999999


Q ss_pred             HHHHHHHHhhc-----cceEEEecC-CccccccccCCCceeEEEEecCCCCCcccccc--cccccc----------cchH
Q 044550          343 IVHDFAQFVSS-----KECLWLQIN-GTKESVINSFGDNVRHLGLNFQRGASFPMSIH--RFNRFS----------ILSE  404 (662)
Q Consensus       343 ll~dl~~~i~~-----~e~~~~~~~-~~~~~~~~~~~~~~r~l~l~~~~~~~~~~~~~--~l~~l~----------~~~~  404 (662)
                      +|||||.++|.     +|+.+.... +....+....+..+|++++.++....++....  ++++|-          ....
T Consensus       486 vvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~  565 (889)
T KOG4658|consen  486 VVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGE  565 (889)
T ss_pred             HHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHH
Confidence            99999999999     666555543 22223334446789999999988764433222  233331          2233


Q ss_pred             hhhcCccccccc---c-cccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccccc
Q 044550          405 LFSKLVFLRALR---N-WIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMR  480 (662)
Q Consensus       405 ~~~~l~~Lrvl~---~-~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~  480 (662)
                      +|..++.||||+   | .+.++|.+|++|.|||||+++++.++.+|.++++|+.|.+||+..+..+..+|.....|.+||
T Consensus       566 ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  566 FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            456666666662   2 455666666666666666666666666666666666666666666655555555445566666


Q ss_pred             EEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccc
Q 044550          481 SLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK  560 (662)
Q Consensus       481 ~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~  560 (662)
                      +|.+..... ..-...++.+.+|++|..+......    ...+..+..++.|+.+.+.-..  ..  .......+.+..+
T Consensus       646 ~L~l~~s~~-~~~~~~l~el~~Le~L~~ls~~~~s----~~~~e~l~~~~~L~~~~~~l~~--~~--~~~~~~~~~~~~l  716 (889)
T KOG4658|consen  646 VLRLPRSAL-SNDKLLLKELENLEHLENLSITISS----VLLLEDLLGMTRLRSLLQSLSI--EG--CSKRTLISSLGSL  716 (889)
T ss_pred             EEEeecccc-ccchhhHHhhhcccchhhheeecch----hHhHhhhhhhHHHHHHhHhhhh--cc--cccceeecccccc
Confidence            666644320 0001112222333333222221111    0011122222222211110000  00  1112234556778


Q ss_pred             ccCCcEEEEecCCCCCCCCchhHHHHhhhCC---CCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCC-CCC
Q 044550          561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ---PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEH-LPP  635 (662)
Q Consensus       561 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~---~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~-lp~  635 (662)
                      .+|+.|.+..++......      ...+...   .++++.++.+.++...+.|.|....++|+.|.+..|...+. +|.
T Consensus       717 ~~L~~L~i~~~~~~e~~~------~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~  789 (889)
T KOG4658|consen  717 GNLEELSILDCGISEIVI------EWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPK  789 (889)
T ss_pred             cCcceEEEEcCCCchhhc------ccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCH
Confidence            899999998776521110      0111111   24467777777777777788888888999999998886653 443

>PLN03210 Resistant to P

Probab=100.00  E-value=1.4e-43  Score=419.12  Aligned_cols=529  Identities=20%  Similarity=0.230  Sum_probs=338.6

Q ss_pred             HHHHHHHHHHHHHHHHhcccCCceecc-------CCCCCCCCCCCccccccCCceecccchHHHHHHHHhccCccCCCCe
Q 044550           98 AVKIREISEKLDEIAARKDRFKFVENV-------SNSVKKPERERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGL  170 (662)
Q Consensus        98 ~~~i~~i~~~l~~i~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~  170 (662)
                      ..+++++++.+.+++...+ |.+....       .....+...-..++..+.+++|||++.++++..+|..+..    ++
T Consensus       133 ~~~~~~w~~al~~~~~~~g-~~~~~~~~E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~~~----~~  207 (1153)
T PLN03210        133 EDEKIQWKQALTDVANILG-YHSQNWPNEAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLESE----EV  207 (1153)
T ss_pred             hhHHHHHHHHHHHHhCcCc-eecCCCCCHHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccccC----ce
Confidence            3578889999988887643 2221100       0001111111122334456799999999999999865543    78


Q ss_pred             EEEEEecCCCc--------------ccch---------------------------------------------------
Q 044550          171 HVISLVGLGGI--------------EPFF---------------------------------------------------  185 (662)
Q Consensus       171 ~vi~I~G~gGi--------------~~F~---------------------------------------------------  185 (662)
                      +||+||||||+              .+|+                                                   
T Consensus       208 ~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~  287 (1153)
T PLN03210        208 RMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLG  287 (1153)
T ss_pred             EEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCCHH
Confidence            99999999999              1221                                                   


Q ss_pred             ------------------------hhh----hcCCCCceEEEEcccHHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcC
Q 044550          186 ------------------------LRL----KNGLHGSKIFVTTRNESVARMMGSTNIISIKQLAEEECWSLFKQLAFFG  237 (662)
Q Consensus       186 ------------------------~~l----~~~~~gSrIivTTR~~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~  237 (662)
                                              .++    ...++|||||||||+++++..++++++|+++.|++++||+||+++||+.
T Consensus       288 ~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~  367 (1153)
T PLN03210        288 AMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKK  367 (1153)
T ss_pred             HHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence                                    111    1236799999999999999988888999999999999999999999976


Q ss_pred             CCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh-------hhhhhhcCcccCC--------
Q 044550          238 RSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW-------KVLEIGQGYLNAK--------  302 (662)
Q Consensus       238 ~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~-------~~~~iaeg~i~~~--------  302 (662)
                      ..  .++++++++++|+++|+|+|||++++|+.|+++ +..+|+.++++..+       ...++++.-+...        
T Consensus       368 ~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~Fl~  444 (1153)
T PLN03210        368 NS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRH  444 (1153)
T ss_pred             CC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhhhe
Confidence            43  356789999999999999999999999999988 68999999876443       2223444333221        


Q ss_pred             ---------CCchHHHHH------HHHHHHHHhcCcccccccCCCCCeeeEEcChHHHHHHHHhhccce-------EEEe
Q 044550          303 ---------EDEEMEMIG------EECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKEC-------LWLQ  360 (662)
Q Consensus       303 ---------~~~~~~~~~------~~~~~~L~~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~~~e~-------~~~~  360 (662)
                               ........+      +..++.|+++||++...       ..++|||++|+||+.+++++.       +...
T Consensus       445 ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~  517 (1153)
T PLN03210        445 IACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD  517 (1153)
T ss_pred             ehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence                     111111112      12367899999998753       258999999999999997763       2111


Q ss_pred             cCCc-cccccccCCCceeEEEEecCCCCCcc---ccc---ccccccc--------------cchHhhhcC-cccccc---
Q 044550          361 INGT-KESVINSFGDNVRHLGLNFQRGASFP---MSI---HRFNRFS--------------ILSELFSKL-VFLRAL---  415 (662)
Q Consensus       361 ~~~~-~~~~~~~~~~~~r~l~l~~~~~~~~~---~~~---~~l~~l~--------------~~~~~~~~l-~~Lrvl---  415 (662)
                      .... ...........+++++++......+.   ..+   .+++.+.              .+|..|..+ ..||.+   
T Consensus       518 ~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~  597 (1153)
T PLN03210        518 AKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD  597 (1153)
T ss_pred             HHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence            1110 01111233566788877655543221   112   2222211              112222222 235554   


Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      .+.++.+|..+ .+.+|++|++++|.+..+|..+..+++|+.|++++|..++.+|. ++.+++|+.|++++|..+..+|.
T Consensus       598 ~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~  675 (1153)
T PLN03210        598 KYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS  675 (1153)
T ss_pred             CCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence            45677777776 46788888888888888888888888888888888777777775 77788888888888877788888


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCCh-hhhhhccc-----------cccccC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHV-DEVERLQL-----------YNKKNL  563 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~-~~~~~~~l-----------~~~~~L  563 (662)
                      .++.+++|+.|++..+.+  ....+..+    ++++|+.|.++++..+..+... ..+....+           ..+.+|
T Consensus       676 si~~L~~L~~L~L~~c~~--L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L  749 (1153)
T PLN03210        676 SIQYLNKLEDLDMSRCEN--LEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENL  749 (1153)
T ss_pred             hhhccCCCCEEeCCCCCC--cCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCeeecCCCcccccccccccccc
Confidence            888888888887443222  11122222    4555666666665322221110 00000000           012334


Q ss_pred             CcEEEEecCCC--CCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCcccccccCccEEEecCCCCCCCCCCCCCcc
Q 044550          564 LRLGLQFGGDI--EGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP  640 (662)
Q Consensus       564 ~~L~l~~~~~~--~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp  640 (662)
                      +.|.+..+...  .......    .......+++|+.|++++|. ...+|.+++++++|+.|+|++|..++.+|....++
T Consensus       750 ~~L~l~~~~~~~l~~~~~~l----~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~  825 (1153)
T PLN03210        750 DELILCEMKSEKLWERVQPL----TPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE  825 (1153)
T ss_pred             ccccccccchhhcccccccc----chhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCcc
Confidence            44444321100  0000000    00011235789999999985 45689999999999999999999888898877888


Q ss_pred             -cceeecccccCcc
Q 044550          641 -LEKLQLKNLKSVK  653 (662)
Q Consensus       641 -L~~l~l~~l~~L~  653 (662)
                       |+.|.+.+|..+.
T Consensus       826 sL~~L~Ls~c~~L~  839 (1153)
T PLN03210        826 SLESLDLSGCSRLR  839 (1153)
T ss_pred             ccCEEECCCCCccc
Confidence             9999998876654

syringae 6; Provisional

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=99.74  E-value=1.1e-18  Score=177.41  Aligned_cols=138  Identities=43%  Similarity=0.599  Sum_probs=107.4

Q ss_pred             ccchHHHHHHHHhccCccCCCCeEEEEEecCCCc----------------ccch--------------------------
Q 044550          148 RVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI----------------EPFF--------------------------  185 (662)
Q Consensus       148 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi----------------~~F~--------------------------  185 (662)
                      ||.++++|.++|.....    +.++|+|+||||+                ++|+                          
T Consensus         1 re~~~~~l~~~L~~~~~----~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~   76 (287)
T PF00931_consen    1 REKEIEKLKDWLLDNSN----EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE   76 (287)
T ss_dssp             -HHHHHHHHHHHHTTTT----SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHhhCCCC----CeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence            68899999999997543    7899999999999                2333                          


Q ss_pred             --------------------------------------------hhhhcCCCCceEEEEcccHHHHhhhCC-CCeeeCCC
Q 044550          186 --------------------------------------------LRLKNGLHGSKIFVTTRNESVARMMGS-TNIISIKQ  220 (662)
Q Consensus       186 --------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~~~~-~~~~~l~~  220 (662)
                                                                  ..++....||+||||||+..++..++. ...|++++
T Consensus        77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~  156 (287)
T PF00931_consen   77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEP  156 (287)
T ss_dssp             C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS
T ss_pred             cccccccccccccccccchhhhccccceeeeeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                        334555679999999999999988765 67999999


Q ss_pred             CChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhhh
Q 044550          221 LAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMWK  290 (662)
Q Consensus       221 L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~~  290 (662)
                      |++++|++||++.++... ....+.+.+++++|+++|+|+|||++++|++|+.+.+..+|+.+++...+.
T Consensus       157 L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~  225 (287)
T PF00931_consen  157 LSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENS  225 (287)
T ss_dssp             --HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHC
T ss_pred             cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            999999999999998655 223455678899999999999999999999997776788999988764443

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.66  E-value=5e-18  Score=174.02  Aligned_cols=245  Identities=22%  Similarity=0.270  Sum_probs=154.4

Q ss_pred             CCceeEEEEecCCCCCcccccccccccc-------c---chHhhhcCcccccc---ccccc--ccCcccCCCCccceeee
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFS-------I---LSELFSKLVFLRAL---RNWIR--EIPENVGKLIHLKYLNL  437 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~-------~---~~~~~~~l~~Lrvl---~~~~~--~lp~~i~~l~~Lr~L~L  437 (662)
                      ...+++|.++...+..+|..+.++..|.       .   +..-++.++.||.+   .|.++  -+|+.|..|..|..|+|
T Consensus        31 Mt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDL  110 (1255)
T KOG0444|consen   31 MTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDL  110 (1255)
T ss_pred             hhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeec
Confidence            3457788888888888887776666542       1   11224555566655   45443  47888999999999999


Q ss_pred             cCCCCcccchhhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccC
Q 044550          438 SELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD  516 (662)
Q Consensus       438 ~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~  516 (662)
                      |+|++.+.|..+.+-+++-.|+|++|+ +..+|..+ .+|+.|-+|++++|.. ..+|+.+..|..|++|.+  .+|.. 
T Consensus       111 ShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~lfinLtDLLfLDLS~NrL-e~LPPQ~RRL~~LqtL~L--s~NPL-  185 (1255)
T KOG0444|consen  111 SHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNSLFINLTDLLFLDLSNNRL-EMLPPQIRRLSMLQTLKL--SNNPL-  185 (1255)
T ss_pred             chhhhhhcchhhhhhcCcEEEEcccCc-cccCCchHHHhhHhHhhhccccchh-hhcCHHHHHHhhhhhhhc--CCChh-
Confidence            999999999999999999999999887 88888754 5888999999998864 889999999999999974  33322 


Q ss_pred             CCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCC--
Q 044550          517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL--  594 (662)
Q Consensus       517 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~--  594 (662)
                        ...-+..|+.++.|..|.+++...      .-.-...++..+.+|..++++.++.          ..+++.+...+  
T Consensus       186 --~hfQLrQLPsmtsL~vLhms~TqR------Tl~N~Ptsld~l~NL~dvDlS~N~L----------p~vPecly~l~~L  247 (1255)
T KOG0444|consen  186 --NHFQLRQLPSMTSLSVLHMSNTQR------TLDNIPTSLDDLHNLRDVDLSENNL----------PIVPECLYKLRNL  247 (1255)
T ss_pred             --hHHHHhcCccchhhhhhhcccccc------hhhcCCCchhhhhhhhhccccccCC----------CcchHHHhhhhhh
Confidence              133455666666666666655411      0111122334444555555544432          12233333334  


Q ss_pred             ---------------------CCcEEEEeecCCCCCCcccccccCccEEEecCCCCC-CCCCC-CCCcc
Q 044550          595 ---------------------NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC-EHLPP-LGKLP  640 (662)
Q Consensus       595 ---------------------~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~-~~lp~-l~~Lp  640 (662)
                                           +|++|+++.|..+.+|..+..|+.|++|.+.+|+.. +.+|+ +|+|-
T Consensus       248 rrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~  316 (1255)
T KOG0444|consen  248 RRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI  316 (1255)
T ss_pred             heeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence                                 455555555555555555555666666665555532 34443 34444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.65  E-value=2.5e-16  Score=187.16  Aligned_cols=87  Identities=28%  Similarity=0.442  Sum_probs=48.2

Q ss_pred             ccCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCC
Q 044550          421 EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISR  499 (662)
Q Consensus       421 ~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~  499 (662)
                      .+|..++++.+|++|++++|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.
T Consensus       155 ~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             cCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            34555555555555555555543 44555555555555555555544445555555555555555555544455555555


Q ss_pred             CCCCCccC
Q 044550          500 LTSLRTLE  507 (662)
Q Consensus       500 L~~L~~L~  507 (662)
                      +++|++|+
T Consensus       235 l~~L~~L~  242 (968)
T PLN00113        235 LTSLNHLD  242 (968)
T ss_pred             CCCCCEEE
Confidence            55555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.64  E-value=4e-16  Score=185.41  Aligned_cols=262  Identities=20%  Similarity=0.212  Sum_probs=145.1

Q ss_pred             CCceeEEEEecCCCC-Cccc-ccccccccc--------cchHhhhcCcccccc---cccc-cccCcccCCCCccceeeec
Q 044550          373 GDNVRHLGLNFQRGA-SFPM-SIHRFNRFS--------ILSELFSKLVFLRAL---RNWI-REIPENVGKLIHLKYLNLS  438 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~-~~~~-~~~~l~~l~--------~~~~~~~~l~~Lrvl---~~~~-~~lp~~i~~l~~Lr~L~L~  438 (662)
                      ...+|+|.+..+... .+|. .+.+++.|.        .++..+.++++|++|   +|.+ ..+|..++++++|++|+|+
T Consensus       117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~  196 (968)
T PLN00113        117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLA  196 (968)
T ss_pred             CCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeecc
Confidence            345666666555443 2221 223333321        334446667777776   3444 4567778888888888888


Q ss_pred             CCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCC
Q 044550          439 ELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDG  517 (662)
Q Consensus       439 ~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~  517 (662)
                      +|.+. .+|..++++++|++|++++|.....+|..++++++|++|++++|.....+|..++.+++|++|++.  .+...+
T Consensus       197 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~--~n~l~~  274 (968)
T PLN00113        197 SNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY--QNKLSG  274 (968)
T ss_pred             CCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc--CCeeec
Confidence            88765 567788888888888888877556778788888888888888887666777778888888887643  222222


Q ss_pred             CCccCccccccCcccCccccccCCCCCCCC----C-------------hhhhhhccccccccCCcEEEEecCCCCCCCCc
Q 044550          518 GGTCRLESLKNLQLLRKCSIEGLKGLSNVS----H-------------VDEVERLQLYNKKNLLRLGLQFGGDIEGRRKN  580 (662)
Q Consensus       518 ~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~----~-------------~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~  580 (662)
                      ..+..+..   +++|+.|.+++..-.....    .             ........+..+++|+.|+++.+..       
T Consensus       275 ~~p~~l~~---l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l-------  344 (968)
T PLN00113        275 PIPPSIFS---LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF-------  344 (968)
T ss_pred             cCchhHhh---ccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCC-------
Confidence            22333333   3344444443321000000    0             0000111233344455555544321       


Q ss_pred             hhHHHHhhhCCCCCCCcEEEEeecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeeccc
Q 044550          581 EKDKQLLEALQPPLNVEELEIESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKN  648 (662)
Q Consensus       581 ~~~~~~l~~l~~~~~L~~L~l~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~~  648 (662)
                        .......+..+++|+.|++++|... .+|.++..+++|+.|++++|.....+|. ++.+| |+.|.+.+
T Consensus       345 --~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~  413 (968)
T PLN00113        345 --SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQD  413 (968)
T ss_pred             --cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcC
Confidence              0111223344556666666666533 3466666666666666666665444443 55666 66665543

>PLN03210 Resistant to P

Probab=99.62  E-value=4.1e-15  Score=177.20  Aligned_cols=234  Identities=21%  Similarity=0.283  Sum_probs=134.2

Q ss_pred             cccccccCcccCCCCccceeeecCCC-CcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELR-IERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~-i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      ++.+..+|.++..+++|++|+|+++. +..+|. ++.+++|++|++.+|..+..+|..++++++|++|++++|..+..+|
T Consensus       620 ~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp  698 (1153)
T PLN03210        620 GSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP  698 (1153)
T ss_pred             CccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccC
Confidence            45666677777777777777777654 555553 6667777777777776677777777777777777777776666666


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCcc-------------Cccccc---cCcccCccccccCCC---------C------
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTC-------------RLESLK---NLQLLRKCSIEGLKG---------L------  543 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~-------------~l~~L~---~L~~L~~L~i~~~~~---------~------  543 (662)
                      ..+ ++++|+.|++..+..  ....+.             .+..++   .+.+|..|.+..+..         +      
T Consensus       699 ~~i-~l~sL~~L~Lsgc~~--L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~  775 (1153)
T PLN03210        699 TGI-NLKSLYRLNLSGCSR--LKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTM  775 (1153)
T ss_pred             CcC-CCCCCCEEeCCCCCC--ccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhh
Confidence            655 566666665332211  000000             000100   122222222221100         0      


Q ss_pred             --CCCC-----Ch--hhhhhccccccccCCcEEEEecCCCCC---CCC--c-----hhHHHHhhhC-CCCCCCcEEEEee
Q 044550          544 --SNVS-----HV--DEVERLQLYNKKNLLRLGLQFGGDIEG---RRK--N-----EKDKQLLEAL-QPPLNVEELEIES  603 (662)
Q Consensus       544 --~~~~-----~~--~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~--~-----~~~~~~l~~l-~~~~~L~~L~l~~  603 (662)
                        .++.     ..  .......+.++++|+.|+++.|..+..   ...  .     ......+..+ ..+.+|+.|++++
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~  855 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR  855 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCC
Confidence              0000     00  000122345566777777765542111   000  0     0000001111 1236799999999


Q ss_pred             cCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecccccCcc
Q 044550          604 YRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKNLKSVK  653 (662)
Q Consensus       604 ~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~~l~~L~  653 (662)
                      +....+|.|+..+++|+.|+|++|+.+..+|. ++.++ |+.+.+.+|..|.
T Consensus       856 n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~  907 (1153)
T PLN03210        856 TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALT  907 (1153)
T ss_pred             CCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccc
Confidence            99889999999999999999999998887765 67888 9999999998886

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.57  E-value=6.2e-17  Score=166.13  Aligned_cols=248  Identities=24%  Similarity=0.234  Sum_probs=162.2

Q ss_pred             CCceeEEEEecCCCCCcc---ccccccccc---------ccchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550          373 GDNVRHLGLNFQRGASFP---MSIHRFNRF---------SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL  437 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~---~~~~~l~~l---------~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L  437 (662)
                      ..++.||++..+.+..+.   .++.++|++         +.+|.-+.++..|.++   +|.+++.|..+..-+++-.|+|
T Consensus        54 lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNL  133 (1255)
T KOG0444|consen   54 LQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNL  133 (1255)
T ss_pred             HhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEc
Confidence            346778888777665332   334444443         2344446777777777   5899999999999999999999


Q ss_pred             cCCCCcccchh-hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccC
Q 044550          438 SELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD  516 (662)
Q Consensus       438 ~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~  516 (662)
                      |+|+|..+|.+ +-+|..|-+|||++|+ +..+|+.+..|.+|+.|.+++|....---..+..|++|++|.+....... 
T Consensus       134 S~N~IetIPn~lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl-  211 (1255)
T KOG0444|consen  134 SYNNIETIPNSLFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL-  211 (1255)
T ss_pred             ccCccccCCchHHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh-
Confidence            99999999986 4589999999999998 99999999999999999999997532211234457788888754443332 


Q ss_pred             CCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCC-------------CCCchhH
Q 044550          517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG-------------RRKNEKD  583 (662)
Q Consensus       517 ~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-------------~~~~~~~  583 (662)
                      ...+.++..|.+|..+. |+.+++   +.++       ..+.++.+|+.|+++.+.....             ......-
T Consensus       212 ~N~Ptsld~l~NL~dvD-lS~N~L---p~vP-------ecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQL  280 (1255)
T KOG0444|consen  212 DNIPTSLDDLHNLRDVD-LSENNL---PIVP-------ECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQL  280 (1255)
T ss_pred             hcCCCchhhhhhhhhcc-ccccCC---Ccch-------HHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchh
Confidence            12233444444443332 333343   2221       1233444555555544321100             0000011


Q ss_pred             HHHhhhCCCCCCCcEEEEeecC--CCCCCcccccccCccEEEecCCCCCCCCC
Q 044550          584 KQLLEALQPPLNVEELEIESYR--GNIFPKWLTSLTNLRELKLSLCVNCEHLP  634 (662)
Q Consensus       584 ~~~l~~l~~~~~L~~L~l~~~~--~~~lP~~i~~l~~L~~L~L~~~~~~~~lp  634 (662)
                      ...+..++.++.|++|.+.+|.  +..+|+.|+.|.+|+++...+|+ ++-+|
T Consensus       281 t~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVP  332 (1255)
T KOG0444|consen  281 TVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVP  332 (1255)
T ss_pred             ccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCc
Confidence            2234456778899999999886  56789999999999999999886 33344

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.43  E-value=8.9e-15  Score=143.35  Aligned_cols=217  Identities=22%  Similarity=0.270  Sum_probs=120.6

Q ss_pred             eeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCc
Q 044550          376 VRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNL  455 (662)
Q Consensus       376 ~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L  455 (662)
                      +..+.++.+....+|..+.+          +.+++.|.|.++.+.++|+.++.+..|+.|+.+.|.+.++|++|+.+..|
T Consensus        70 l~vl~~~~n~l~~lp~aig~----------l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l  139 (565)
T KOG0472|consen   70 LTVLNVHDNKLSQLPAAIGE----------LEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDL  139 (565)
T ss_pred             eeEEEeccchhhhCCHHHHH----------HHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhh
Confidence            34455566666666555433          34445555556666666777777777777777777666777777777777


Q ss_pred             cEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCcc
Q 044550          456 QKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKC  535 (662)
Q Consensus       456 ~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L  535 (662)
                      +.|+..+|. +..+|.+++.+.+|..|++.+|.. +.+|+..-.|+.|++|+.  +.+ ..+..|..++.+..|.-|. |
T Consensus       140 ~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~l-~~l~~~~i~m~~L~~ld~--~~N-~L~tlP~~lg~l~~L~~Ly-L  213 (565)
T KOG0472|consen  140 EDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNKL-KALPENHIAMKRLKHLDC--NSN-LLETLPPELGGLESLELLY-L  213 (565)
T ss_pred             hhhhccccc-cccCchHHHHHHHHHHhhccccch-hhCCHHHHHHHHHHhccc--chh-hhhcCChhhcchhhhHHHH-h
Confidence            777666665 666666666666666666666654 455544444666666652  222 2222333333333333221 1


Q ss_pred             ccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccccc
Q 044550          536 SIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTS  615 (662)
Q Consensus       536 ~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~  615 (662)
                      .-..+..++.           +.+|..|..|+++-+.         ...-..+..+..++|..|++..|....+|..+.-
T Consensus       214 ~~Nki~~lPe-----------f~gcs~L~Elh~g~N~---------i~~lpae~~~~L~~l~vLDLRdNklke~Pde~cl  273 (565)
T KOG0472|consen  214 RRNKIRFLPE-----------FPGCSLLKELHVGENQ---------IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICL  273 (565)
T ss_pred             hhcccccCCC-----------CCccHHHHHHHhcccH---------HHhhHHHHhcccccceeeeccccccccCchHHHH
Confidence            1111111121           2334444444443221         1111223344567777777777777777777777


Q ss_pred             ccCccEEEecCCC
Q 044550          616 LTNLRELKLSLCV  628 (662)
Q Consensus       616 l~~L~~L~L~~~~  628 (662)
                      +.+|.+|++++|.
T Consensus       274 LrsL~rLDlSNN~  286 (565)
T KOG0472|consen  274 LRSLERLDLSNND  286 (565)
T ss_pred             hhhhhhhcccCCc
Confidence            7777777777776

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.38  E-value=1.4e-13  Score=141.04  Aligned_cols=200  Identities=23%  Similarity=0.317  Sum_probs=126.8

Q ss_pred             hhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccc
Q 044550          406 FSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNM  479 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L  479 (662)
                      +..+..||++   .|.+..+|. ++..=.++++|+|++|.|+.+- ..+.+|.+|.+|.|+.|+ +..+|.. +.+|++|
T Consensus       145 L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNr-ittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNR-ITTLPQRSFKRLPKL  223 (873)
T ss_pred             HHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCc-ccccCHHHhhhcchh
Confidence            3444445555   466666653 3444567888888888888663 367778888888888877 7777764 4458888


Q ss_pred             cEEecCCCcccccc-CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc
Q 044550          480 RSLLNDGTYLLKYM-PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY  558 (662)
Q Consensus       480 ~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  558 (662)
                      +.|++..|.+ ..+ -..|.+|++|+.|.+-.  |.........+-.+.++..|. |..+         .+..+..-.+.
T Consensus       224 ~~LdLnrN~i-rive~ltFqgL~Sl~nlklqr--N~I~kL~DG~Fy~l~kme~l~-L~~N---------~l~~vn~g~lf  290 (873)
T KOG4194|consen  224 ESLDLNRNRI-RIVEGLTFQGLPSLQNLKLQR--NDISKLDDGAFYGLEKMEHLN-LETN---------RLQAVNEGWLF  290 (873)
T ss_pred             hhhhccccce-eeehhhhhcCchhhhhhhhhh--cCcccccCcceeeecccceee-cccc---------hhhhhhccccc
Confidence            8888888764 322 24467788888776432  222111122333344444333 2222         22334445677


Q ss_pred             ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCC
Q 044550          559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCV  628 (662)
Q Consensus       559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~  628 (662)
                      +++.|+.|+++++..         ..-..+++.-.++|+.|+|++|.++++|. .+..|+.|+.|.|++|.
T Consensus       291 gLt~L~~L~lS~NaI---------~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns  352 (873)
T KOG4194|consen  291 GLTSLEQLDLSYNAI---------QRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNS  352 (873)
T ss_pred             ccchhhhhccchhhh---------heeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccc
Confidence            888999999988753         22234567778899999999999888865 34466777777777765

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.38  E-value=1.7e-14  Score=125.37  Aligned_cols=157  Identities=23%  Similarity=0.251  Sum_probs=109.2

Q ss_pred             ccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550          425 NVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR  504 (662)
Q Consensus       425 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~  504 (662)
                      ++..+.+...|.|++|.++.+|+.|..|.+|+.|++.+|+ ++++|.+++.|++|++|+++-|. +..+|.+||.++.|+
T Consensus        28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~le  105 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALE  105 (264)
T ss_pred             cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCchhh
Confidence            3456777888899999999999999999999999999888 89999999999999999998875 478999999999999


Q ss_pred             ccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHH
Q 044550          505 TLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDK  584 (662)
Q Consensus       505 ~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~  584 (662)
                      .|++.+.+-+.    ....+++-.++.|+.                               |+++.++.          +
T Consensus       106 vldltynnl~e----~~lpgnff~m~tlra-------------------------------lyl~dndf----------e  140 (264)
T KOG0617|consen  106 VLDLTYNNLNE----NSLPGNFFYMTTLRA-------------------------------LYLGDNDF----------E  140 (264)
T ss_pred             hhhcccccccc----ccCCcchhHHHHHHH-------------------------------HHhcCCCc----------c
Confidence            99854432221    111222223333333                               22222211          1


Q ss_pred             HHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          585 QLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       585 ~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      ..+.....+.+|+.|.+..|....+|..++.+..|+.|++.+|+
T Consensus       141 ~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr  184 (264)
T KOG0617|consen  141 ILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR  184 (264)
T ss_pred             cCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce
Confidence            11223344566666666666666777777777777777777776

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.33  E-value=2.7e-14  Score=139.97  Aligned_cols=214  Identities=22%  Similarity=0.298  Sum_probs=163.0

Q ss_pred             EEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEE
Q 044550          379 LGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKL  458 (662)
Q Consensus       379 l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L  458 (662)
                      +.+..+....+|..+..          ..++.+|...++.+.++|++|+.+..|..|+..+|++..+|++++++..|..|
T Consensus        96 l~vs~n~ls~lp~~i~s----------~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l  165 (565)
T KOG0472|consen   96 LNVSHNKLSELPEQIGS----------LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKL  165 (565)
T ss_pred             hhcccchHhhccHHHhh----------hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHh
Confidence            33444455555544432          33444555557889999999999999999999999999999999999999999


Q ss_pred             eccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccc
Q 044550          459 DIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIE  538 (662)
Q Consensus       459 ~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~  538 (662)
                      ++.+++ ++.+|+..-.++.|++|+...|- ++.+|+.+|.|.+|.-|++....-.+    -..|..+..|..|+ .+. 
T Consensus       166 ~~~~n~-l~~l~~~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki~~----lPef~gcs~L~Elh-~g~-  237 (565)
T KOG0472|consen  166 DLEGNK-LKALPENHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKIRF----LPEFPGCSLLKELH-VGE-  237 (565)
T ss_pred             hccccc-hhhCCHHHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccccc----CCCCCccHHHHHHH-hcc-
Confidence            999998 88898888889999999998885 58999999999999998754333322    12555555555554 222 


Q ss_pred             cCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccC
Q 044550          539 GLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTN  618 (662)
Q Consensus       539 ~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~  618 (662)
                              ...+.+....++++.+|..|++..+..          .++++.++...+|++|++++|.++.+|..++++ +
T Consensus       238 --------N~i~~lpae~~~~L~~l~vLDLRdNkl----------ke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-h  298 (565)
T KOG0472|consen  238 --------NQIEMLPAEHLKHLNSLLVLDLRDNKL----------KEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-H  298 (565)
T ss_pred             --------cHHHhhHHHHhcccccceeeecccccc----------ccCchHHHHhhhhhhhcccCCccccCCcccccc-e
Confidence                    223334445566778888888876643          345566677889999999999999999999999 9


Q ss_pred             ccEEEecCCCC
Q 044550          619 LRELKLSLCVN  629 (662)
Q Consensus       619 L~~L~L~~~~~  629 (662)
                      |+.|-+.+|+.
T Consensus       299 L~~L~leGNPl  309 (565)
T KOG0472|consen  299 LKFLALEGNPL  309 (565)
T ss_pred             eeehhhcCCch
Confidence            99999999973

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.27  E-value=2.6e-12  Score=131.82  Aligned_cols=257  Identities=19%  Similarity=0.196  Sum_probs=146.9

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccc-hh
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIP-ET  448 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~  448 (662)
                      +...+.|.+..+.+..+.            ...|.++.+|..+   .|.++.+|......-||+.|+|.+|.|.++- ++
T Consensus        77 p~~t~~LdlsnNkl~~id------------~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~  144 (873)
T KOG4194|consen   77 PSQTQTLDLSNNKLSHID------------FEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEE  144 (873)
T ss_pred             ccceeeeeccccccccCc------------HHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHH
Confidence            444555555555554331            1225556666655   4677777776666777777777777777663 35


Q ss_pred             hhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccc
Q 044550          449 LCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLK  527 (662)
Q Consensus       449 i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~  527 (662)
                      +.-+..|++|||+.|. +.++|. ++..=.++++|++++|.+...--..|..+.+|-+|.  ...|.........+..|.
T Consensus       145 L~~l~alrslDLSrN~-is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlk--LsrNrittLp~r~Fk~L~  221 (873)
T KOG4194|consen  145 LSALPALRSLDLSRNL-ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLK--LSRNRITTLPQRSFKRLP  221 (873)
T ss_pred             HHhHhhhhhhhhhhch-hhcccCCCCCCCCCceEEeeccccccccccccccccchheeee--cccCcccccCHHHhhhcc
Confidence            6677777777777766 666654 333446677777777765333334466666666665  333333333344444455


Q ss_pred             cCcccCc----cc------cccCCCCCCC----CChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC
Q 044550          528 NLQLLRK----CS------IEGLKGLSNV----SHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP  593 (662)
Q Consensus       528 ~L~~L~~----L~------i~~~~~~~~~----~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~  593 (662)
                      +|+.|..    +.      ..++..++++    .....+..-.+..+.+++.|+|..+..         ..-.-..+..+
T Consensus       222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l---------~~vn~g~lfgL  292 (873)
T KOG4194|consen  222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRL---------QAVNEGWLFGL  292 (873)
T ss_pred             hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchh---------hhhhccccccc
Confidence            5544431    11      1111111111    011223333455677888888876642         11112345567


Q ss_pred             CCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecccccCccEeCCccc
Q 044550          594 LNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFL  660 (662)
Q Consensus       594 ~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~~L~~~~n~~~  660 (662)
                      ..|+.|++++|.+.++ ++.....++|+.|+|++|.       +..|+ -.+-.|+.++.|.+..|.+.
T Consensus       293 t~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~-------i~~l~~~sf~~L~~Le~LnLs~Nsi~  354 (873)
T KOG4194|consen  293 TSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNR-------ITRLDEGSFRVLSQLEELNLSHNSID  354 (873)
T ss_pred             chhhhhccchhhhheeecchhhhcccceeEeccccc-------cccCChhHHHHHHHhhhhcccccchH
Confidence            8899999999987665 3333466899999999997       44555 44445566667777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.23  E-value=3.6e-13  Score=117.15  Aligned_cols=146  Identities=23%  Similarity=0.372  Sum_probs=110.7

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC  450 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~  450 (662)
                      +.+.++.++.+.+..+|..             +..+++|.++   .|.++++|.+|++|+.||.|+++-|.+..+|..+|
T Consensus        33 s~ITrLtLSHNKl~~vppn-------------ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPN-------------IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             hhhhhhhcccCceeecCCc-------------HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccC
Confidence            4455566655555544333             5666777777   57899999999999999999999999999999999


Q ss_pred             cCCCccEEeccCCCCC-ccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC
Q 044550          451 ELYNLQKLDIRGCQYL-RGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL  529 (662)
Q Consensus       451 ~L~~L~~L~l~~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L  529 (662)
                      .++-|+.||+..|+.- ..+|..+..|+.|+-|+++.|.. ..+|..+|+|++||.|.+  ..+..    -....+++.|
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~l--rdndl----l~lpkeig~l  172 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSL--RDNDL----LSLPKEIGDL  172 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEee--ccCch----hhCcHHHHHH
Confidence            9999999999987632 46899999999999999999865 889999999999999963  33322    2233455555


Q ss_pred             cccCcccccc
Q 044550          530 QLLRKCSIEG  539 (662)
Q Consensus       530 ~~L~~L~i~~  539 (662)
                      +.|+.|.|.+
T Consensus       173 t~lrelhiqg  182 (264)
T KOG0617|consen  173 TRLRELHIQG  182 (264)
T ss_pred             HHHHHHhccc
Confidence            6666655554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.14  E-value=6.8e-11  Score=132.35  Aligned_cols=207  Identities=20%  Similarity=0.232  Sum_probs=129.6

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      +..++.|.+..+.+..+|..+            +.+++.|.+.+|.++.+|..+.  .+|+.|+|++|.+..+|..+.  
T Consensus       198 p~~L~~L~Ls~N~LtsLP~~l------------~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--  261 (754)
T PRK15370        198 PEQITTLILDNNELKSLPENL------------QGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--  261 (754)
T ss_pred             ccCCcEEEecCCCCCcCChhh------------ccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--
Confidence            456788888888777665432            3455555555677888887654  478999999999999888775  


Q ss_pred             CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCccc
Q 044550          453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLL  532 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L  532 (662)
                      .+|++|++++|+ +..+|..+.  .+|++|++++|.. ..+|..+.  ++|+.|++.  .+.... .+..+  .   .+|
T Consensus       262 s~L~~L~Ls~N~-L~~LP~~l~--~sL~~L~Ls~N~L-t~LP~~lp--~sL~~L~Ls--~N~Lt~-LP~~l--~---~sL  327 (754)
T PRK15370        262 SALQSLDLFHNK-ISCLPENLP--EELRYLSVYDNSI-RTLPAHLP--SGITHLNVQ--SNSLTA-LPETL--P---PGL  327 (754)
T ss_pred             CCCCEEECcCCc-cCccccccC--CCCcEEECCCCcc-ccCcccch--hhHHHHHhc--CCcccc-CCccc--c---ccc
Confidence            579999999876 778887664  5899999998864 66776543  467777533  232211 11111  1   234


Q ss_pred             CccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550          533 RKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW  612 (662)
Q Consensus       533 ~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~  612 (662)
                      +.|.+.+..    +..++.    .+  .++|+.|+++.+...          .+...+  +++|+.|++++|....+|..
T Consensus       328 ~~L~Ls~N~----Lt~LP~----~l--~~sL~~L~Ls~N~L~----------~LP~~l--p~~L~~LdLs~N~Lt~LP~~  385 (754)
T PRK15370        328 KTLEAGENA----LTSLPA----SL--PPELQVLDVSKNQIT----------VLPETL--PPTITTLDVSRNALTNLPEN  385 (754)
T ss_pred             eeccccCCc----cccCCh----hh--cCcccEEECCCCCCC----------cCChhh--cCCcCEEECCCCcCCCCCHh
Confidence            444443321    111111    11  257888888766421          011111  35788888888888888876


Q ss_pred             cccccCccEEEecCCCCCCCCC
Q 044550          613 LTSLTNLRELKLSLCVNCEHLP  634 (662)
Q Consensus       613 i~~l~~L~~L~L~~~~~~~~lp  634 (662)
                      +.  .+|+.|++++|... .+|
T Consensus       386 l~--~sL~~LdLs~N~L~-~LP  404 (754)
T PRK15370        386 LP--AALQIMQASRNNLV-RLP  404 (754)
T ss_pred             HH--HHHHHHhhccCCcc-cCc
Confidence            54  36888888888633 444

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.12  E-value=1.7e-10  Score=129.25  Aligned_cols=205  Identities=19%  Similarity=0.256  Sum_probs=132.7

Q ss_pred             ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCC
Q 044550          375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN  454 (662)
Q Consensus       375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~  454 (662)
                      +...+.+....+..+|..+            ...+..|.+-+|.++.+|..+.  .+|++|++++|.++.+|..+.  .+
T Consensus       179 ~~~~L~L~~~~LtsLP~~I------------p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~  242 (754)
T PRK15370        179 NKTELRLKILGLTTIPACI------------PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DT  242 (754)
T ss_pred             CceEEEeCCCCcCcCCccc------------ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--cc
Confidence            3445666555555554332            2344455555788888988765  589999999999999998765  47


Q ss_pred             ccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCc
Q 044550          455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRK  534 (662)
Q Consensus       455 L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~  534 (662)
                      |+.|++++|. +..+|..+.  .+|+.|++++|.. ..+|..+.  ++|+.|++.  ++... ..+..+   .  ..|..
T Consensus       243 L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~L-~~LP~~l~--~sL~~L~Ls--~N~Lt-~LP~~l---p--~sL~~  308 (754)
T PRK15370        243 IQEMELSINR-ITELPERLP--SALQSLDLFHNKI-SCLPENLP--EELRYLSVY--DNSIR-TLPAHL---P--SGITH  308 (754)
T ss_pred             ccEEECcCCc-cCcCChhHh--CCCCEEECcCCcc-CccccccC--CCCcEEECC--CCccc-cCcccc---h--hhHHH
Confidence            9999999998 778998764  5899999998865 67887664  478888643  33321 111111   1  12333


Q ss_pred             cccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccc
Q 044550          535 CSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLT  614 (662)
Q Consensus       535 L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~  614 (662)
                      |.+.+.    .+..++.    .  -.++|+.|.++.+...          .+...+  +++|+.|++++|.+..+|..+.
T Consensus       309 L~Ls~N----~Lt~LP~----~--l~~sL~~L~Ls~N~Lt----------~LP~~l--~~sL~~L~Ls~N~L~~LP~~lp  366 (754)
T PRK15370        309 LNVQSN----SLTALPE----T--LPPGLKTLEAGENALT----------SLPASL--PPELQVLDVSKNQITVLPETLP  366 (754)
T ss_pred             HHhcCC----ccccCCc----c--ccccceeccccCCccc----------cCChhh--cCcccEEECCCCCCCcCChhhc
Confidence            443331    1111111    0  1257888888766431          011112  3689999999999988897663


Q ss_pred             cccCccEEEecCCCCCCCCC
Q 044550          615 SLTNLRELKLSLCVNCEHLP  634 (662)
Q Consensus       615 ~l~~L~~L~L~~~~~~~~lp  634 (662)
                        ++|++|+|++|... .+|
T Consensus       367 --~~L~~LdLs~N~Lt-~LP  383 (754)
T PRK15370        367 --PTITTLDVSRNALT-NLP  383 (754)
T ss_pred             --CCcCEEECCCCcCC-CCC
Confidence              68999999999743 455

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=9.6e-11  Score=133.25  Aligned_cols=246  Identities=28%  Similarity=0.316  Sum_probs=131.2

Q ss_pred             ccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCC-cccchhhhcCCCccEEeccCCCCCccCCccccc
Q 044550          400 SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRI-ERIPETLCELYNLQKLDIRGCQYLRGLPAGIRK  475 (662)
Q Consensus       400 ~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i-~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~  475 (662)
                      ..+|..++++-+||.|   +..+.++|.++++|+.|.||++..+.. ..+|..+..|.+|++|.+.... ...--..++.
T Consensus       585 ~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~e  663 (889)
T KOG4658|consen  585 SKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKE  663 (889)
T ss_pred             CcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc-cccchhhHHh
Confidence            4677778888999988   468899999999999999999999874 3556666669999999998654 2111223344


Q ss_pred             cccccEEecCCCcccc-ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCC-------
Q 044550          476 LMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVS-------  547 (662)
Q Consensus       476 L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~-------  547 (662)
                      +.+|++|..-.+.... .+-..+..++.|.++........  ......+..+..|.+|+.|.|..+...+...       
T Consensus       664 l~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~--~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~  741 (889)
T KOG4658|consen  664 LENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEG--CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLI  741 (889)
T ss_pred             hhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcc--cccceeecccccccCcceEEEEcCCCchhhcccccccc
Confidence            4444444433221111 11122334444443332222100  1113344455555556566666554321100       


Q ss_pred             --C-hhhhhhcc------------ccccccCCcEEEEecCCCCCCCCchhHHHHhh-hCCCCCCCcEEE-EeecCCCCCC
Q 044550          548 --H-VDEVERLQ------------LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE-ALQPPLNVEELE-IESYRGNIFP  610 (662)
Q Consensus       548 --~-~~~~~~~~------------l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~-~l~~~~~L~~L~-l~~~~~~~lP  610 (662)
                        . +.......            ....++|++|++..+..+............+. ...|+.++..+. +.+..+  +|
T Consensus       742 ~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~--l~  819 (889)
T KOG4658|consen  742 VLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGG--LP  819 (889)
T ss_pred             hhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCC--Cc
Confidence              0 10111111            11336888888888765433322222222222 234566676663 444332  33


Q ss_pred             c--ccc-cccCccEEEecCCCCCCCCCCCCCcc-cceeecccc-cCccEeC
Q 044550          611 K--WLT-SLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL-KSVKRVG  656 (662)
Q Consensus       611 ~--~i~-~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l-~~L~~~~  656 (662)
                      .  |.. .+++|..+.+..|+.      ++.+| +..+.+.+| ..+....
T Consensus       820 ~i~~~~l~~~~l~~~~ve~~p~------l~~~P~~~~~~i~~~~~~~~~~~  864 (889)
T KOG4658|consen  820 QLYWLPLSFLKLEELIVEECPK------LGKLPLLSTLTIVGCEEKLKEYP  864 (889)
T ss_pred             eeEecccCccchhheehhcCcc------cccCccccccceeccccceeecC
Confidence            2  222 344577777777654      56677 666777775 4444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.11  E-value=5.2e-10  Score=124.62  Aligned_cols=35  Identities=14%  Similarity=0.075  Sum_probs=19.6

Q ss_pred             CCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          595 NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       595 ~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      +|+.|++++|.+..+|..+..+++|+.|+|++|+.
T Consensus       423 ~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~L  457 (788)
T PRK15387        423 GLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPL  457 (788)
T ss_pred             hhhhhhhccCcccccChHHhhccCCCeEECCCCCC
Confidence            45555555555555555555555555555555553

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.11  E-value=8.1e-12  Score=135.04  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=34.1

Q ss_pred             CCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          592 PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       592 ~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      -+.+|++++++.+....+|.|+..+.+|+.|.+.+|..
T Consensus       239 ~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l  276 (1081)
T KOG0618|consen  239 VPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL  276 (1081)
T ss_pred             ccccceeeecchhhhhcchHHHHhcccceEecccchhH
Confidence            35789999999999999999999999999999999873

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.96  E-value=2.3e-09  Score=119.64  Aligned_cols=199  Identities=19%  Similarity=0.124  Sum_probs=114.9

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|.+..|.+..+|..   +..|++|++++|.++.+|..   +++|+.|++++|. +..+|...   .+|+.|+++
T Consensus       261 p~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls  330 (788)
T PRK15387        261 PPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLPALP---SELCKLWAY  330 (788)
T ss_pred             ccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCc-cccCCCCc---ccccccccc
Confidence            34455555556666666653   24677788888888877763   4678888888876 66676532   356677777


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|.. ..+|..   ..+|+.|++.  +|... ..+.....      |..|.+.+.    .+..++.       ...+|+.
T Consensus       331 ~N~L-~~LP~l---p~~Lq~LdLS--~N~Ls-~LP~lp~~------L~~L~Ls~N----~L~~LP~-------l~~~L~~  386 (788)
T PRK15387        331 NNQL-TSLPTL---PSGLQELSVS--DNQLA-SLPTLPSE------LYKLWAYNN----RLTSLPA-------LPSGLKE  386 (788)
T ss_pred             cCcc-cccccc---ccccceEecC--CCccC-CCCCCCcc------cceehhhcc----ccccCcc-------cccccce
Confidence            7754 556642   2467777632  23221 11221222      222222211    0011111       1246788


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcccceee
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQ  645 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~LpL~~l~  645 (662)
                      |+++.+...           .+.  ..+++|+.|++++|.+..+|..   ..+|+.|+|++|..       ..||-....
T Consensus       387 LdLs~N~Lt-----------~LP--~l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqL-------t~LP~sl~~  443 (788)
T PRK15387        387 LIVSGNRLT-----------SLP--VLPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQL-------TRLPESLIH  443 (788)
T ss_pred             EEecCCccc-----------CCC--CcccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcc-------cccChHHhh
Confidence            888765420           011  1246899999999999888864   35788999999973       344422334


Q ss_pred             cccccCccEeCCcccC
Q 044550          646 LKNLKSVKRVGNEFLG  661 (662)
Q Consensus       646 l~~l~~L~~~~n~~~g  661 (662)
                      +.++..|++.+|.|+|
T Consensus       444 L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        444 LSSETTVNLEGNPLSE  459 (788)
T ss_pred             ccCCCeEECCCCCCCc
Confidence            4566667777787775

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.84  E-value=1e-10  Score=126.66  Aligned_cols=203  Identities=21%  Similarity=0.231  Sum_probs=103.9

Q ss_pred             cchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccc-
Q 044550          401 ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKL-  476 (662)
Q Consensus       401 ~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L-  476 (662)
                      .+|.+...+.+|..+   .|.+..+|..+..+..|++|++..|.++.+|+...++++|++|||..|+ +..+|+.+-.. 
T Consensus       255 ~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~-L~~lp~~~l~v~  333 (1081)
T KOG0618|consen  255 NLPEWIGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNN-LPSLPDNFLAVL  333 (1081)
T ss_pred             cchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcc-ccccchHHHhhh
Confidence            344445555555555   4566667777777777777777777777777777777777777777766 66666633221 


Q ss_pred             c-cccEEecCCCccccccCC-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhh
Q 044550          477 M-NMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVER  554 (662)
Q Consensus       477 ~-~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~  554 (662)
                      . .|+.|+.+.+.. ..+|. +=..+..|+.|.  .++|....   ..+.-+.+...|+.|.+..-    .+.   ....
T Consensus       334 ~~~l~~ln~s~n~l-~~lp~~~e~~~~~Lq~Ly--lanN~Ltd---~c~p~l~~~~hLKVLhLsyN----rL~---~fpa  400 (1081)
T KOG0618|consen  334 NASLNTLNVSSNKL-STLPSYEENNHAALQELY--LANNHLTD---SCFPVLVNFKHLKVLHLSYN----RLN---SFPA  400 (1081)
T ss_pred             hHHHHHHhhhhccc-cccccccchhhHHHHHHH--HhcCcccc---cchhhhccccceeeeeeccc----ccc---cCCH
Confidence            1 245555554432 33331 112344555553  34443322   22233333334444333321    001   1112


Q ss_pred             ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      ..+.++..|+.|+++.+..          ....+.+..++.|+.|...+|....+| .+..++.|+.++|+.|.
T Consensus       401 s~~~kle~LeeL~LSGNkL----------~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  401 SKLRKLEELEELNLSGNKL----------TTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             HHHhchHHhHHHhcccchh----------hhhhHHHHhhhhhHHHhhcCCceeech-hhhhcCcceEEecccch
Confidence            2344445555555554432          112233344455666666666666666 55566666666666665

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.79  E-value=4.3e-10  Score=115.71  Aligned_cols=89  Identities=34%  Similarity=0.525  Sum_probs=60.3

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      .|.+..+|..+++|..|.||+|+.|++..+|..++.|+ |+.|-+++|+ ++.+|..++.+.+|.+|+.+.|.. ..+|.
T Consensus       107 ~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei-~slps  183 (722)
T KOG0532|consen  107 HNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEI-QSLPS  183 (722)
T ss_pred             hccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhh-hhchH
Confidence            46666677777777777777777777777777776654 6777777666 667777777667777777776653 55666


Q ss_pred             cCCCCCCCCccC
Q 044550          496 GISRLTSLRTLE  507 (662)
Q Consensus       496 ~i~~L~~L~~L~  507 (662)
                      .++.|.+|+.|.
T Consensus       184 ql~~l~slr~l~  195 (722)
T KOG0532|consen  184 QLGYLTSLRDLN  195 (722)
T ss_pred             HhhhHHHHHHHH
Confidence            666666666553

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.74  E-value=4.3e-10  Score=110.81  Aligned_cols=76  Identities=29%  Similarity=0.404  Sum_probs=38.9

Q ss_pred             cccccccccccCcc-cCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCC
Q 044550          412 LRALRNWIREIPEN-VGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGT  487 (662)
Q Consensus       412 Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~  487 (662)
                      +|.-.|.|+.+|+. |+.++.||.|+|++|.|+.| |..+.+|.+|..|-+-+++.++.+|. .++.|..|+.|.+.-|
T Consensus        72 irLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan  150 (498)
T KOG4237|consen   72 IRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN  150 (498)
T ss_pred             EEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence            33334555555432 34455566666666665554 44555555555555555333555554 2345555555544444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.63  E-value=3.6e-09  Score=109.22  Aligned_cols=242  Identities=20%  Similarity=0.154  Sum_probs=143.3

Q ss_pred             hhcCcccccc---cccc-----cccCcccCCCCccceeeecCCCCcc-------cchhhhcCCCccEEeccCCCCCccCC
Q 044550          406 FSKLVFLRAL---RNWI-----REIPENVGKLIHLKYLNLSELRIER-------IPETLCELYNLQKLDIRGCQYLRGLP  470 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~-----~~lp~~i~~l~~Lr~L~L~~~~i~~-------lp~~i~~L~~L~~L~l~~~~~l~~lP  470 (662)
                      +..+..|+.+   ++.+     ..++..+...+.|++|+++++.+..       ++..+.++.+|+.|++++|......+
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~   98 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC   98 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence            4444445555   3443     3456667778889999999887652       44567889999999999998444556


Q ss_pred             cccccccc---ccEEecCCCcccc----ccCCcCCCC-CCCCccCceeecCccCCCC-ccCccccccCcccCccccccCC
Q 044550          471 AGIRKLMN---MRSLLNDGTYLLK----YMPIGISRL-TSLRTLEKFVVGGGVDGGG-TCRLESLKNLQLLRKCSIEGLK  541 (662)
Q Consensus       471 ~~i~~L~~---L~~L~l~~~~~~~----~~p~~i~~L-~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~~~  541 (662)
                      ..+..+.+   |++|++++|....    .+...+..+ ++|+.|++.  ++...... ......+..++.|+.|.+.+. 
T Consensus        99 ~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~--~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-  175 (319)
T cd00116          99 GVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLG--RNRLEGASCEALAKALRANRDLKELNLANN-  175 (319)
T ss_pred             HHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcC--CCcCCchHHHHHHHHHHhCCCcCEEECcCC-
Confidence            66666665   9999999986531    223345566 788888643  33221111 112223444555666666553 


Q ss_pred             CCCCCCC-hhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-Ccccc-----
Q 044550          542 GLSNVSH-VDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLT-----  614 (662)
Q Consensus       542 ~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~-----  614 (662)
                         .+.. ........+..+.+|+.|+++.+..     .......+...+...++|+.|++++|..... +..+.     
T Consensus       176 ---~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-----~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~  247 (319)
T cd00116         176 ---GIGDAGIRALAEGLKANCNLEVLDLNNNGL-----TDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLS  247 (319)
T ss_pred             ---CCchHHHHHHHHHHHhCCCCCEEeccCCcc-----ChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhc
Confidence               1111 1111222345567999999987643     1122334455566778999999999875421 11222     


Q ss_pred             cccCccEEEecCCCCCCCCCCCCCcccceeecccccCccEeCCccc
Q 044550          615 SLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFL  660 (662)
Q Consensus       615 ~l~~L~~L~L~~~~~~~~lp~l~~LpL~~l~l~~l~~L~~~~n~~~  660 (662)
                      ..+.|++|++++|.....  ....++-..-.+.++..+++.+|.|.
T Consensus       248 ~~~~L~~L~l~~n~i~~~--~~~~l~~~~~~~~~L~~l~l~~N~l~  291 (319)
T cd00116         248 PNISLLTLSLSCNDITDD--GAKDLAEVLAEKESLLELDLRGNKFG  291 (319)
T ss_pred             cCCCceEEEccCCCCCcH--HHHHHHHHHhcCCCccEEECCCCCCc
Confidence            247999999999973310  01112201112267888888888876

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.59  E-value=5.5e-09  Score=107.86  Aligned_cols=197  Identities=20%  Similarity=0.153  Sum_probs=125.4

Q ss_pred             cCcccCCCCccceeeecCCCCc-ccchhhhcCCC---ccEEeccCCCCCc-----cCCcccccc-ccccEEecCCCccc-
Q 044550          422 IPENVGKLIHLKYLNLSELRIE-RIPETLCELYN---LQKLDIRGCQYLR-----GLPAGIRKL-MNMRSLLNDGTYLL-  490 (662)
Q Consensus       422 lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~---L~~L~l~~~~~l~-----~lP~~i~~L-~~L~~L~l~~~~~~-  490 (662)
                      ++..+..+++|++|++++|.+. ..+..+..+..   |+.|++++|. +.     .+...+..+ ++|+.|++++|... 
T Consensus        73 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  151 (319)
T cd00116          73 LLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEG  151 (319)
T ss_pred             HHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHHHHHhCCCCceEEEcCCCcCCc
Confidence            4556777899999999999986 45556666665   9999999998 43     233455667 89999999999753 


Q ss_pred             ---cccCCcCCCCCCCCccCceeecCccCCCC-ccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550          491 ---KYMPIGISRLTSLRTLEKFVVGGGVDGGG-TCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL  566 (662)
Q Consensus       491 ---~~~p~~i~~L~~L~~L~~~~~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  566 (662)
                         ..++..+..+++|++|++.  .+...... ......+..+..|+.|++.+... .  ..........+..+++|+.|
T Consensus       152 ~~~~~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i-~--~~~~~~l~~~~~~~~~L~~L  226 (319)
T cd00116         152 ASCEALAKALRANRDLKELNLA--NNGIGDAGIRALAEGLKANCNLEVLDLNNNGL-T--DEGASALAETLASLKSLEVL  226 (319)
T ss_pred             hHHHHHHHHHHhCCCcCEEECc--CCCCchHHHHHHHHHHHhCCCCCEEeccCCcc-C--hHHHHHHHHHhcccCCCCEE
Confidence               1344456677889988743  33321100 11122345556777777766511 1  11112233446678899999


Q ss_pred             EEEecCCCCCCCCchhHHHHhhhC-CCCCCCcEEEEeecCCC-----CCCcccccccCccEEEecCCCC
Q 044550          567 GLQFGGDIEGRRKNEKDKQLLEAL-QPPLNVEELEIESYRGN-----IFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       567 ~l~~~~~~~~~~~~~~~~~~l~~l-~~~~~L~~L~l~~~~~~-----~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      +++.+..     ...........+ .+.+.|++|++++|...     .++..+..+++|++|++++|..
T Consensus       227 ~ls~n~l-----~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l  290 (319)
T cd00116         227 NLGDNNL-----TDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF  290 (319)
T ss_pred             ecCCCcC-----chHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCC
Confidence            9988653     111112222222 24589999999999764     1233444678999999999974

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.55  E-value=7.9e-09  Score=106.64  Aligned_cols=183  Identities=26%  Similarity=0.355  Sum_probs=137.5

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      .|.+..+|..++.+..|..|.|..|.+..+|..+++|..|.+|||+.|. +..+|..+..|+ |+.|-+++|.+ +.+|+
T Consensus        84 rNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq-lS~lp~~lC~lp-Lkvli~sNNkl-~~lp~  160 (722)
T KOG0532|consen   84 RNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ-LSHLPDGLCDLP-LKVLIVSNNKL-TSLPE  160 (722)
T ss_pred             ccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch-hhcCChhhhcCc-ceeEEEecCcc-ccCCc
Confidence            4778889999999999999999999999999999999999999999998 999999999886 99999998864 89999


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      +++.+..|..|+  ...|..    ......+..|..|+.|.+..-                     +|            
T Consensus       161 ~ig~~~tl~~ld--~s~nei----~slpsql~~l~slr~l~vrRn---------------------~l------------  201 (722)
T KOG0532|consen  161 EIGLLPTLAHLD--VSKNEI----QSLPSQLGYLTSLRDLNVRRN---------------------HL------------  201 (722)
T ss_pred             ccccchhHHHhh--hhhhhh----hhchHHhhhHHHHHHHHHhhh---------------------hh------------
Confidence            999888998887  333333    334445555665655444321                     00            


Q ss_pred             CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCC---CCCCCCCcc-cceeecccc
Q 044550          576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCE---HLPPLGKLP-LEKLQLKNL  649 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~---~lp~l~~Lp-L~~l~l~~l  649 (662)
                              ..+++.+. .-.|.+|+++.|....+|-+|..+..|++|.|.+|.+..   ++-.-|.+. .++|...-|
T Consensus       202 --------~~lp~El~-~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  202 --------EDLPEELC-SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             --------hhCCHHHh-CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence                    01111222 234778888888888889888889999999998887542   112256777 888887776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.52  E-value=6.1e-08  Score=103.22  Aligned_cols=96  Identities=34%  Similarity=0.458  Sum_probs=81.5

Q ss_pred             cccccccccccccCcccCCCC-ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550          410 VFLRALRNWIREIPENVGKLI-HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       410 ~~Lrvl~~~~~~lp~~i~~l~-~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~  488 (662)
                      ..|....+.+.++|+.++.+. +|++|++++|.+..+|..++.+++|+.|++.+|. +..+|...+.+++|+.|++++|.
T Consensus       119 ~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~ls~N~  197 (394)
T COG4886         119 TSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSGNK  197 (394)
T ss_pred             eEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheeccCCc
Confidence            333333678899988888885 9999999999999999889999999999999998 88899877789999999999996


Q ss_pred             cccccCCcCCCCCCCCccC
Q 044550          489 LLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       489 ~~~~~p~~i~~L~~L~~L~  507 (662)
                      . ..+|..++.+..|++|.
T Consensus       198 i-~~l~~~~~~~~~L~~l~  215 (394)
T COG4886         198 I-SDLPPEIELLSALEELD  215 (394)
T ss_pred             c-ccCchhhhhhhhhhhhh
Confidence            5 78888777777788885

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.40  E-value=4e-08  Score=89.90  Aligned_cols=57  Identities=26%  Similarity=0.417  Sum_probs=14.4

Q ss_pred             CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccc-ccccccEEecCCC
Q 044550          429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIR-KLMNMRSLLNDGT  487 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~-~L~~L~~L~l~~~  487 (662)
                      +.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+. .+++|++|++++|
T Consensus        41 l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             -TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS
T ss_pred             hcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEEECcCC
Confidence            444444444444444442 34444444444444444 444433232 3444444444444

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.24  E-value=1.3e-06  Score=65.38  Aligned_cols=58  Identities=29%  Similarity=0.459  Sum_probs=49.6

Q ss_pred             CccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCc
Q 044550          430 IHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       430 ~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~  488 (662)
                      ++|++|++++|.++.+|+ .+.++++|++|++++|. +..+|. .+..+++|++|++++|.
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHHcCCCCCCEEeCcCCc
Confidence            478999999999999985 77889999999999888 666654 67899999999999885

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.22  E-value=7.6e-07  Score=94.84  Aligned_cols=192  Identities=28%  Similarity=0.299  Sum_probs=127.7

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      +.+...+..+..+..+..|++.++.++.+|+.++.+. +|+.|+++++. +..+|..++.+++|+.|++++|.. ..+|.
T Consensus       103 ~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~  180 (394)
T COG4886         103 NRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFNDL-SDLPK  180 (394)
T ss_pred             cccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccc-hhhhhhhhhccccccccccCCchh-hhhhh
Confidence            3333334445566889999999999999999999885 99999999998 888988899999999999999975 77888


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      ..+.+++|+.|++  .++.. ...+..+   ..+..|..+.+.+-.        .......+.++.++..|.+..+..  
T Consensus       181 ~~~~~~~L~~L~l--s~N~i-~~l~~~~---~~~~~L~~l~~~~N~--------~~~~~~~~~~~~~l~~l~l~~n~~--  244 (394)
T COG4886         181 LLSNLSNLNNLDL--SGNKI-SDLPPEI---ELLSALEELDLSNNS--------IIELLSSLSNLKNLSGLELSNNKL--  244 (394)
T ss_pred             hhhhhhhhhheec--cCCcc-ccCchhh---hhhhhhhhhhhcCCc--------ceecchhhhhcccccccccCCcee--
Confidence            7778889998863  22221 1111111   112223333332210        000111233444444454332211  


Q ss_pred             CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC
Q 044550          576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP  635 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~  635 (662)
                              ......+..+++|+.|++++|.+..++. ++.+.+|+.|+++++.....+|.
T Consensus       245 --------~~~~~~~~~l~~l~~L~~s~n~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         245 --------EDLPESIGNLSNLETLDLSNNQISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             --------eeccchhccccccceecccccccccccc-ccccCccCEEeccCccccccchh
Confidence                    1113455667789999999999888776 88999999999999876554443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.22  E-value=1.2e-06  Score=80.27  Aligned_cols=127  Identities=28%  Similarity=0.280  Sum_probs=48.9

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhh-c
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLC-E  451 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~-~  451 (662)
                      +.+.|.|+++++.+..+ ..+.         ..+.+++.|...+|.+..+. ++..+++|+.|++++|.|+.+++.+. .
T Consensus        18 ~~~~~~L~L~~n~I~~I-e~L~---------~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen   18 PVKLRELNLRGNQISTI-ENLG---------ATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             -------------------S-----------TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH
T ss_pred             ccccccccccccccccc-cchh---------hhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHh
Confidence            34567888888777544 2211         11333444444468888874 68889999999999999999977664 6


Q ss_pred             CCCccEEeccCCCCCccCC--ccccccccccEEecCCCccccccCC----cCCCCCCCCccCceeec
Q 044550          452 LYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTYLLKYMPI----GISRLTSLRTLEKFVVG  512 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~~~  512 (662)
                      +++|+.|++++|+ +..+-  ..+..+++|+.|++.+|+.. ..+.    -+..+++|+.|+...+.
T Consensus        87 lp~L~~L~L~~N~-I~~l~~l~~L~~l~~L~~L~L~~NPv~-~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   87 LPNLQELYLSNNK-ISDLNELEPLSSLPKLRVLSLEGNPVC-EKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             -TT--EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GGG-GSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             CCcCCEEECcCCc-CCChHHhHHHHcCCCcceeeccCCccc-chhhHHHHHHHHcChhheeCCEEcc
Confidence            9999999999988 65543  34678999999999999763 2222    25567778887755443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.19  E-value=3.5e-06  Score=86.61  Aligned_cols=67  Identities=21%  Similarity=0.297  Sum_probs=53.0

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI  497 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i  497 (662)
                      +..+.++++|++++|.++.+|. +  -.+|+.|.+++|..+..+|..+  ..+|++|++++|..+..+|..+
T Consensus        48 ~~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~sL  114 (426)
T PRK15386         48 IEEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPESV  114 (426)
T ss_pred             HHHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccccc
Confidence            3446889999999999999983 2  2369999999999888888765  3589999999996667777643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.13  E-value=8.8e-08  Score=94.85  Aligned_cols=124  Identities=23%  Similarity=0.245  Sum_probs=96.3

Q ss_pred             cCCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecC-CCCccc
Q 044550          371 SFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSE-LRIERI  445 (662)
Q Consensus       371 ~~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~-~~i~~l  445 (662)
                      ..+....-+.+..+.+..+|..            .|..++.||.+   +|.|..+ |..|..|..|-.|-+-+ |.|+.+
T Consensus        64 ~LP~~tveirLdqN~I~~iP~~------------aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   64 NLPPETVEIRLDQNQISSIPPG------------AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             cCCCcceEEEeccCCcccCChh------------hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            3467778888888888877643            37778888887   4778777 88888888887776666 889999


Q ss_pred             ch-hhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC-cCCCCCCCCccC
Q 044550          446 PE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLE  507 (662)
Q Consensus       446 p~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~  507 (662)
                      |+ .+++|..|+.|.+.-|+......+.+..|++|..|.+..|.. ..++. .+..+.+++++.
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~-q~i~~~tf~~l~~i~tlh  194 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKI-QSICKGTFQGLAAIKTLH  194 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhh-hhhccccccchhccchHh
Confidence            87 688999999999988774444456788999999999988864 66666 577788888775

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.05  E-value=5.4e-06  Score=56.85  Aligned_cols=40  Identities=28%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC
Q 044550          430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP  470 (662)
Q Consensus       430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP  470 (662)
                      ++|++|++++|.|+.+|+.+++|++|++|++++|. +..+|
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence            47899999999999998889999999999999987 66554

...

>PLN03150 hypothetical protein; Provisional

Probab=97.96  E-value=7.5e-06  Score=91.67  Aligned_cols=76  Identities=30%  Similarity=0.501  Sum_probs=35.5

Q ss_pred             cCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC
Q 044550          422 IPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI  497 (662)
Q Consensus       422 lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i  497 (662)
                      +|..++.|.+|++|+|++|.+. .+|..++++.+|+.|+|++|.....+|..+++|++|++|++++|.....+|..+
T Consensus       434 ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l  510 (623)
T PLN03150        434 IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL  510 (623)
T ss_pred             CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence            3444444444444444444443 444444444444444444444333444444444444444444444433444443

>PLN03150 hypothetical protein; Provisional

Probab=97.86  E-value=1.7e-05  Score=88.78  Aligned_cols=92  Identities=22%  Similarity=0.341  Sum_probs=77.6

Q ss_pred             ccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCce
Q 044550          431 HLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF  509 (662)
Q Consensus       431 ~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~  509 (662)
                      .+..|+|++|.+. .+|..+++|.+|+.|+|++|.....+|..++.+++|+.|++++|.....+|..+++|++|+.|++ 
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L-  497 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL-  497 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC-
Confidence            4788999999987 78999999999999999999855689999999999999999999887789999999999999974 


Q ss_pred             eecCccCCCCccCcc
Q 044550          510 VVGGGVDGGGTCRLE  524 (662)
Q Consensus       510 ~~~~~~~~~~~~~l~  524 (662)
                       ..+...+..+..+.
T Consensus       498 -s~N~l~g~iP~~l~  511 (623)
T PLN03150        498 -NGNSLSGRVPAALG  511 (623)
T ss_pred             -cCCcccccCChHHh
Confidence             34444444444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.85  E-value=2.8e-06  Score=81.30  Aligned_cols=77  Identities=22%  Similarity=0.206  Sum_probs=53.4

Q ss_pred             CCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          428 KLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       428 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      -...|..|||++|.|+.+-+++.-++.++.|++++|. +..+-. +..|.+|.+|++++|.. ..+.-.-.+|.+.++|.
T Consensus       282 TWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n-La~L~~L~~LDLS~N~L-s~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN-LAELPQLQLLDLSGNLL-AECVGWHLKLGNIKTLK  358 (490)
T ss_pred             hHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh-hhhcccceEeecccchh-HhhhhhHhhhcCEeeee
Confidence            3456888888888888888888888888888888887 555533 77788888888888753 33322223444555553

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.71  E-value=3.7e-05  Score=57.39  Aligned_cols=55  Identities=31%  Similarity=0.414  Sum_probs=46.2

Q ss_pred             cccccccccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCC
Q 044550          410 VFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       410 ~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~  464 (662)
                      +.|.+-+|.+..+|+ .+..+++|++|++++|.++.+|+ .+.++++|++|++++|+
T Consensus         4 ~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    4 ESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             SEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            344444678888874 66889999999999999999865 78999999999999986

...

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=1e-05  Score=81.72  Aligned_cols=39  Identities=23%  Similarity=0.273  Sum_probs=21.7

Q ss_pred             CCCCCCCcEEEEeecCCCCCCc--ccccccCccEEEecCCC
Q 044550          590 LQPPLNVEELEIESYRGNIFPK--WLTSLTNLRELKLSLCV  628 (662)
Q Consensus       590 l~~~~~L~~L~l~~~~~~~lP~--~i~~l~~L~~L~L~~~~  628 (662)
                      ...+++|++|.+..|.....|+  .+..+++|+.|.+-.+.
T Consensus       297 t~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~  337 (505)
T KOG3207|consen  297 THTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNY  337 (505)
T ss_pred             hcccccceeeecccCccccccccchhhccchhhhhhccccc
Confidence            3445677777777776543332  23355666666655443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.50  E-value=2.6e-05  Score=76.72  Aligned_cols=70  Identities=27%  Similarity=0.288  Sum_probs=43.9

Q ss_pred             ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCCC
Q 044550          555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      ..+...+.|+.+.+..++..+     .......+.+..+++|+.|+|..|.++.     +-.-+..+++|+.|++++|..
T Consensus       179 ~~~~~~~~leevr~~qN~I~~-----eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll  253 (382)
T KOG1909|consen  179 EAFQSHPTLEEVRLSQNGIRP-----EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLL  253 (382)
T ss_pred             HHHHhccccceEEEecccccC-----chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccc
Confidence            344555777888777765422     1123445667778888888888887543     111223557888888888863

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.45  E-value=2e-05  Score=79.64  Aligned_cols=65  Identities=18%  Similarity=0.181  Sum_probs=50.3

Q ss_pred             cccCCCCccceeeecCCCCcccch--hhhcCCCccEEeccCCCCCcc---CCccccccccccEEecCCCcc
Q 044550          424 ENVGKLIHLKYLNLSELRIERIPE--TLCELYNLQKLDIRGCQYLRG---LPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       424 ~~i~~l~~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~L~l~~~~~  489 (662)
                      ..-.++..|+...|+++.+...+.  ....|++++.|||++|- +..   +-.-...|++|+.|+++.|..
T Consensus       115 akQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNls~Nrl  184 (505)
T KOG3207|consen  115 AKQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNLSSNRL  184 (505)
T ss_pred             HHhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhcccccccc
Confidence            334578899999999999887774  77889999999999875 322   222346789999999999864

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.44  E-value=4.9e-05  Score=85.00  Aligned_cols=105  Identities=29%  Similarity=0.272  Sum_probs=70.0

Q ss_pred             CccceeeecCCC-C-cccchhhh-cCCCccEEeccCCCCC-ccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550          430 IHLKYLNLSELR-I-ERIPETLC-ELYNLQKLDIRGCQYL-RGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT  505 (662)
Q Consensus       430 ~~Lr~L~L~~~~-i-~~lp~~i~-~L~~L~~L~l~~~~~l-~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~  505 (662)
                      .+|++|+++|.. + ...|..++ .|++|++|.+.+-... ..+-.-..++++|+.||+++++. ..+ .++++|++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI-~nl-~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI-SNL-SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc-cCc-HHHhccccHHH
Confidence            578888888865 2 24455555 4888999999874421 11223345788999999999864 334 78888999998


Q ss_pred             cCceeecCccCCCCccCccccccCcccCccccccC
Q 044550          506 LEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGL  540 (662)
Q Consensus       506 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~  540 (662)
                      |.+....-..    ...+..|-+|++|+.|+|+.-
T Consensus       200 L~mrnLe~e~----~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  200 LSMRNLEFES----YQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             HhccCCCCCc----hhhHHHHhcccCCCeeecccc
Confidence            8755433322    345666777777777777764

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=1.7e-05  Score=76.16  Aligned_cols=62  Identities=21%  Similarity=0.191  Sum_probs=44.0

Q ss_pred             cccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc---ccccCccEEEecCCC
Q 044550          558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL---TSLTNLRELKLSLCV  628 (662)
Q Consensus       558 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i---~~l~~L~~L~L~~~~  628 (662)
                      ..+++|..|+++.+..+        .......+-.++.|++|.++.|.+.. |..+   .+.|.|++|++.+|-
T Consensus       310 ~rcp~l~~LDLSD~v~l--------~~~~~~~~~kf~~L~~lSlsRCY~i~-p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVML--------KNDCFQEFFKFNYLQHLSLSRCYDII-PETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeecccccccc--------CchHHHHHHhcchheeeehhhhcCCC-hHHeeeeccCcceEEEEecccc
Confidence            46788888888877542        12445566678889999998887542 5443   367889999988885

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.39  E-value=4.6e-05  Score=81.47  Aligned_cols=78  Identities=32%  Similarity=0.474  Sum_probs=41.3

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT  505 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~  505 (662)
                      ++.+.+|.+|++.+|.|..+...+..+.+|++|++++|. +..+. ++..++.|+.|++++|.. ..+ .++..+++|+.
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~-~l~~l~~L~~L~l~~N~i-~~~-~~~~~l~~L~~  166 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLE-GLSTLTLLKELNLSGNLI-SDI-SGLESLKSLKL  166 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccc-ccccc-chhhccchhhheeccCcc-hhc-cCCccchhhhc
Confidence            455556666666666665554445556666666666655 44442 245555566666666543 222 23444555555


Q ss_pred             cC
Q 044550          506 LE  507 (662)
Q Consensus       506 L~  507 (662)
                      ++
T Consensus       167 l~  168 (414)
T KOG0531|consen  167 LD  168 (414)
T ss_pred             cc
Confidence            54

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.39  E-value=3.3e-05  Score=74.18  Aligned_cols=98  Identities=32%  Similarity=0.343  Sum_probs=64.5

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +..+..|....|.++.+-+++.-++.+|.|+++.|.|..+-. +..|++|+.||+++|. +..+...-.+|-|.+.|.++
T Consensus       283 Wq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~-Ls~~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  283 WQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNL-LAECVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             HhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccch-hHhhhhhHhhhcCEeeeehh
Confidence            334444444456777776666667788888888888777643 7778888888888876 55554434466677777777


Q ss_pred             CCccccccCCcCCCCCCCCccC
Q 044550          486 GTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      +|.. ..+ .++++|-+|..|+
T Consensus       361 ~N~i-E~L-SGL~KLYSLvnLD  380 (490)
T KOG1259|consen  361 QNKI-ETL-SGLRKLYSLVNLD  380 (490)
T ss_pred             hhhH-hhh-hhhHhhhhheecc
Confidence            7743 222 4566666666666

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.28  E-value=0.00025  Score=48.56  Aligned_cols=35  Identities=34%  Similarity=0.395  Sum_probs=30.9

Q ss_pred             CCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          594 LNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       594 ~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      ++|++|++++|.+..+|..+..|++|+.|++++|+
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            47999999999999999889999999999999997

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.12  E-value=6.8e-05  Score=80.14  Aligned_cols=98  Identities=29%  Similarity=0.375  Sum_probs=73.8

Q ss_pred             hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550          406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL  482 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L  482 (662)
                      +..++.|..+   +|.+..+...+..+++|++|++++|.|+.+ ..+..+..|+.|++.+|. +..++. +..+++|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISG-LESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccC-Cccchhhhcc
Confidence            3445555555   567777765578899999999999999988 458888899999999998 776654 6679999999


Q ss_pred             ecCCCccccccCCc-CCCCCCCCccC
Q 044550          483 LNDGTYLLKYMPIG-ISRLTSLRTLE  507 (662)
Q Consensus       483 ~l~~~~~~~~~p~~-i~~L~~L~~L~  507 (662)
                      ++++|.. ..++.. ...+.+|+.+.
T Consensus       168 ~l~~n~i-~~ie~~~~~~~~~l~~l~  192 (414)
T KOG0531|consen  168 DLSYNRI-VDIENDELSELISLEELD  192 (414)
T ss_pred             cCCcchh-hhhhhhhhhhccchHHHh
Confidence            9999975 333332 46677777774

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.06  E-value=3.6e-05  Score=75.74  Aligned_cols=193  Identities=17%  Similarity=0.114  Sum_probs=92.0

Q ss_pred             ccCCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCccCC--------------ccccccccccEEecC
Q 044550          425 NVGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRGLP--------------AGIRKLMNMRSLLND  485 (662)
Q Consensus       425 ~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP--------------~~i~~L~~L~~L~l~  485 (662)
                      .+-..++|++|+||.|.+.     .+-.-|.+++.|+.|.+.+|. +...-              .-+.+-++||.+...
T Consensus        87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            3445668999999998755     223346678888888888887 43211              112234567777666


Q ss_pred             CCccccccC-----CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCC-hhhhhhccccc
Q 044550          486 GTYLLKYMP-----IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSH-VDEVERLQLYN  559 (662)
Q Consensus       486 ~~~~~~~~p-----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~  559 (662)
                      +|+. ..-+     ..+...+.|+++.+..++....+. ......+.+.+.|++|++..-    .+.. -.......++.
T Consensus       166 rNrl-en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~-~al~eal~~~~~LevLdl~DN----tft~egs~~LakaL~s  239 (382)
T KOG1909|consen  166 RNRL-ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGV-TALAEALEHCPHLEVLDLRDN----TFTLEGSVALAKALSS  239 (382)
T ss_pred             cccc-ccccHHHHHHHHHhccccceEEEecccccCchh-HHHHHHHHhCCcceeeecccc----hhhhHHHHHHHHHhcc
Confidence            6643 2211     223344555555432222211000 011223344444444444321    0000 01122233445


Q ss_pred             cccCCcEEEEecCCCCCCCCchhHHHHhhhCC-CCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCCC
Q 044550          560 KKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ-PPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       560 ~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      .++|+.|++++|..     .+.....+.+.+. ..|+|+.|.+.+|..+.     +-.++...+.|.+|+|++|..
T Consensus       240 ~~~L~El~l~dcll-----~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLL-----ENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeeccccccc-----ccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            55666666665532     1112222333322 24666666666665432     122344566666666666653

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.06  E-value=0.0019  Score=66.78  Aligned_cols=160  Identities=18%  Similarity=0.263  Sum_probs=91.3

Q ss_pred             hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccccc
Q 044550          449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKN  528 (662)
Q Consensus       449 i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~  528 (662)
                      +..+.++..|++++|. +..+|.   -..+|+.|.+++|..+..+|..+  ..+|+.|.+..  +......+.       
T Consensus        48 ~~~~~~l~~L~Is~c~-L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~--Cs~L~sLP~-------  112 (426)
T PRK15386         48 IEEARASGRLYIKDCD-IESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCH--CPEISGLPE-------  112 (426)
T ss_pred             HHHhcCCCEEEeCCCC-CcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccC--ccccccccc-------
Confidence            5567899999999996 999983   23469999999998888888755  35788886432  211111121       


Q ss_pred             CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC
Q 044550          529 LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI  608 (662)
Q Consensus       529 L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~  608 (662)
                        .|..|.+.+. ....+..+          -.+|+.|.+.....       . ...... -.-|++|+.|.+.+|....
T Consensus       113 --sLe~L~L~~n-~~~~L~~L----------PssLk~L~I~~~n~-------~-~~~~lp-~~LPsSLk~L~Is~c~~i~  170 (426)
T PRK15386        113 --SVRSLEIKGS-ATDSIKNV----------PNGLTSLSINSYNP-------E-NQARID-NLISPSLKTLSLTGCSNII  170 (426)
T ss_pred             --ccceEEeCCC-CCcccccC----------cchHhheecccccc-------c-cccccc-cccCCcccEEEecCCCccc
Confidence              1222222211 00111111          12455565532110       0 000000 0135799999999998776


Q ss_pred             CCcccccccCccEEEecCCCCCC-CCCCCCCcc--cceeecccc
Q 044550          609 FPKWLTSLTNLRELKLSLCVNCE-HLPPLGKLP--LEKLQLKNL  649 (662)
Q Consensus       609 lP~~i~~l~~L~~L~L~~~~~~~-~lp~l~~Lp--L~~l~l~~l  649 (662)
                      +|..+.  .+|+.|+++.|.... .++ .+.+|  + .+.+.+|
T Consensus       171 LP~~LP--~SLk~L~ls~n~~~sLeI~-~~sLP~nl-~L~f~n~  210 (426)
T PRK15386        171 LPEKLP--ESLQSITLHIEQKTTWNIS-FEGFPDGL-DIDLQNS  210 (426)
T ss_pred             Cccccc--ccCcEEEecccccccccCc-cccccccc-Eechhhh
Confidence            675544  589999998763111 122 34566  5 7777766

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.05  E-value=5.7e-05  Score=80.95  Aligned_cols=87  Identities=28%  Similarity=0.318  Sum_probs=60.3

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      |.+..+-.++.-+++|+.|+|++|++...- .+..|.+|++|||+.|. +..+|. +.... +|..|++++|.. ..+ .
T Consensus       174 N~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc-~L~~L~lrnN~l-~tL-~  248 (1096)
T KOG1859|consen  174 NRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNC-LRHVPQLSMVGC-KLQLLNLRNNAL-TTL-R  248 (1096)
T ss_pred             hhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccch-hccccccchhhh-hheeeeecccHH-Hhh-h
Confidence            444444455666788888888888877764 67788888888888877 777775 22233 388888888754 333 5


Q ss_pred             cCCCCCCCCccCc
Q 044550          496 GISRLTSLRTLEK  508 (662)
Q Consensus       496 ~i~~L~~L~~L~~  508 (662)
                      ++.+|++|+.|++
T Consensus       249 gie~LksL~~LDl  261 (1096)
T KOG1859|consen  249 GIENLKSLYGLDL  261 (1096)
T ss_pred             hHHhhhhhhccch
Confidence            6778888888874

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=96.89  E-value=1.8e-05  Score=75.95  Aligned_cols=59  Identities=20%  Similarity=0.189  Sum_probs=39.3

Q ss_pred             CCCCCCcEEEEeecCCCCCCcccc---cccCccEEEecCCCCCC--CCCCCCCcc-cceeeccccc
Q 044550          591 QPPLNVEELEIESYRGNIFPKWLT---SLTNLRELKLSLCVNCE--HLPPLGKLP-LEKLQLKNLK  650 (662)
Q Consensus       591 ~~~~~L~~L~l~~~~~~~lP~~i~---~l~~L~~L~L~~~~~~~--~lp~l~~Lp-L~~l~l~~l~  650 (662)
                      ..+++|..|+++.+.-.+ |..+.   .|+.|++|.|+.|....  .+-.++..| |.+|++.+|-
T Consensus       310 ~rcp~l~~LDLSD~v~l~-~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  310 RRCPNLVHLDLSDSVMLK-NDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             HhCCceeeeccccccccC-chHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            356788888888776433 44433   67888888888887431  222367788 8888877653

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.60  E-value=0.00015  Score=61.72  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=45.2

Q ss_pred             CCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT  505 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~  505 (662)
                      ....+|...+|++|.++.+|+.+.... .+++|++.+|. +..+|.++..++.|+.|+++.|.. ...|.-|..|.+|-.
T Consensus        50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE~Aam~aLr~lNl~~N~l-~~~p~vi~~L~~l~~  127 (177)
T KOG4579|consen   50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEELAAMPALRSLNLRFNPL-NAEPRVIAPLIKLDM  127 (177)
T ss_pred             hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHHHhhhHHhhhcccccCcc-ccchHHHHHHHhHHH
Confidence            344556666666666666666555433 56666666665 666666666666666666666653 444444444444444


Q ss_pred             c
Q 044550          506 L  506 (662)
Q Consensus       506 L  506 (662)
                      |
T Consensus       128 L  128 (177)
T KOG4579|consen  128 L  128 (177)
T ss_pred             h
Confidence            4

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=96.50  E-value=0.00055  Score=58.44  Aligned_cols=87  Identities=21%  Similarity=0.259  Sum_probs=46.8

Q ss_pred             ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCC
Q 044550          375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN  454 (662)
Q Consensus       375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~  454 (662)
                      .+..++++.+....+|..+..-         |+..+.|..-+|.+.++|..+..++.||.|+++.|.+...|..|..|.+
T Consensus        54 el~~i~ls~N~fk~fp~kft~k---------f~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~  124 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIK---------FPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIK  124 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhc---------cchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHh
Confidence            3445666666666665544210         1122222222455666666666666666666666666666666666666


Q ss_pred             ccEEeccCCCCCccCCc
Q 044550          455 LQKLDIRGCQYLRGLPA  471 (662)
Q Consensus       455 L~~L~l~~~~~l~~lP~  471 (662)
                      |-.||..++. ...+|-
T Consensus       125 l~~Lds~~na-~~eid~  140 (177)
T KOG4579|consen  125 LDMLDSPENA-RAEIDV  140 (177)
T ss_pred             HHHhcCCCCc-cccCcH
Confidence            6666666554 444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.47  E-value=0.0016  Score=62.95  Aligned_cols=182  Identities=18%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             CCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccc-cccCCcCCCCCCC
Q 044550          429 LIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLL-KYMPIGISRLTSL  503 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~-~~~p~~i~~L~~L  503 (662)
                      ..+++.|+|.+|.|+..   -.-+.+|+.|++|+++.|. +...-... ..+.+|+.|-+.++..- +..-..+..++.+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            56788888888887643   2234578888888888766 32211111 24567888877765431 1122234445555


Q ss_pred             CccCceeecCccCCCCccC---cc-ccccCcccCccccccCCCCCCCCChhhhhhcccc-ccccCCcEEEEecCCCCCCC
Q 044550          504 RTLEKFVVGGGVDGGGTCR---LE-SLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY-NKKNLLRLGLQFGGDIEGRR  578 (662)
Q Consensus       504 ~~L~~~~~~~~~~~~~~~~---l~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~  578 (662)
                      +.|.+..++..........   +. ++..|..+..+...+.    +.        ..+. -.+++.++.+.-++      
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~----~~--------~~l~r~Fpnv~sv~v~e~P------  210 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWL----NK--------NKLSRIFPNVNSVFVCEGP------  210 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHH----HH--------HhHHhhcccchheeeecCc------
Confidence            5554222111000000000   00 1111111111000000    00        0011 12445555554433      


Q ss_pred             CchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-----ccccCccEEEecCCCCCCCCC
Q 044550          579 KNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-----TSLTNLRELKLSLCVNCEHLP  634 (662)
Q Consensus       579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-----~~l~~L~~L~L~~~~~~~~lp  634 (662)
                        ......-++..+++.+.-|.+..+++   -+|-     ..++.|.-|.+++++..+.+.
T Consensus       211 --lK~~s~ek~se~~p~~~~LnL~~~~i---dswasvD~Ln~f~~l~dlRv~~~Pl~d~l~  266 (418)
T KOG2982|consen  211 --LKTESSEKGSEPFPSLSCLNLGANNI---DSWASVDALNGFPQLVDLRVSENPLSDPLR  266 (418)
T ss_pred             --ccchhhcccCCCCCcchhhhhccccc---ccHHHHHHHcCCchhheeeccCCccccccc
Confidence              22333445556677777777776653   3343     367888888888887666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.38  E-value=0.0016  Score=37.07  Aligned_cols=22  Identities=36%  Similarity=0.696  Sum_probs=14.9

Q ss_pred             ccceeeecCCCCcccchhhhcC
Q 044550          431 HLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       431 ~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      +|++|+|++|.++.+|+++++|
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~l   22 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSNL   22 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT-
T ss_pred             CccEEECCCCcCEeCChhhcCC
Confidence            4677777777777777766543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF12061 DUF3542: Protein of unknown function (DUF3542); InterPro: IPR021929 R1 is a gene for resistance to late blight, the most destructive disease in potato cultivation worldwide

Probab=96.15  E-value=0.0096  Score=57.86  Aligned_cols=84  Identities=15%  Similarity=0.177  Sum_probs=61.8

Q ss_pred             cChHHHHHHHHHHHHHHHHHHHHH-HhhhccCcHHHHHHHHHHHhccccccccchhhhhhhhhccccccccCcccccccc
Q 044550            5 TGVDEEVKKLTINLEAIRAVLEDA-KKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSFFCAVSN   83 (662)
Q Consensus         5 ~~v~~~~~~l~~~L~~i~a~L~~a-~~~~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~~~~~~~~~~~~~~~   83 (662)
                      .-++.+++-++.|++++|.||+.. ++.+..++. ...++.++-+.||++|++  +|.+.......+             
T Consensus       317 aflKnQiqvIQ~elesLqpFLk~V~ee~~nkh~~-~ed~a~~ii~kAyevEYV--VDaCi~k~~P~W-------------  380 (402)
T PF12061_consen  317 AFLKNQIQVIQTELESLQPFLKHVVEEPHNKHDT-NEDCATQIIRKAYEVEYV--VDACISKSVPHW-------------  380 (402)
T ss_pred             HHHHHHHHHHHHHHHHhhHHHHHHHhccchhhhh-hhhHHHHHHHHHhheeee--eehhhcCCCcHH-------------
Confidence            346889999999999999999986 664555355 999999999999999999  998843322111             


Q ss_pred             ccccccchhhhHHHHHHHHHHHHHHH
Q 044550           84 CFGSFKQLSLRHHIAVKIREISEKLD  109 (662)
Q Consensus        84 ~~~~~~~~~~~~~~~~~i~~i~~~l~  109 (662)
                           ...++-..+..+|+.++++++
T Consensus       381 -----cl~~WL~dIieei~~ik~~i~  401 (402)
T PF12061_consen  381 -----CLERWLLDIIEEITCIKAKIQ  401 (402)
T ss_pred             -----HHHHHHHHHHHHHHHHHHHhc
Confidence                 112223567777888777764

The R1 gene belongs to the class of plant genes for pathogen resistance that have a leucine zipper motif, a putative nucleotide binding domain and a leucine-rich repeat domain []. Most proteins matching this entry are found associated with PF00931 from PFAM.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.08  E-value=0.0038  Score=59.61  Aligned_cols=69  Identities=22%  Similarity=0.188  Sum_probs=39.8

Q ss_pred             cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-----ccccccCccEEEecCCC
Q 044550          556 QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-----WLTSLTNLRELKLSLCV  628 (662)
Q Consensus       556 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-----~i~~l~~L~~L~L~~~~  628 (662)
                      .+....+|+.+.+..++..|.+    ...-.+..+..+.+|+.|+|..|.++..-+     -+...++|..|.+.+|-
T Consensus       180 ~l~sh~~lk~vki~qNgIrpeg----v~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCl  253 (388)
T COG5238         180 LLESHENLKEVKIQQNGIRPEG----VTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCL  253 (388)
T ss_pred             HHHhhcCceeEEeeecCcCcch----hHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchh
Confidence            3444467788888777653321    122334455566788888888877654211     11133567777777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.48  E-value=0.0078  Score=57.51  Aligned_cols=102  Identities=25%  Similarity=0.301  Sum_probs=56.9

Q ss_pred             cCcccccccccccccCcccCCCCccceeeecCC--CCc-ccchhhhcCCCccEEeccCCCCCcc---CCccccccccccE
Q 044550          408 KLVFLRALRNWIREIPENVGKLIHLKYLNLSEL--RIE-RIPETLCELYNLQKLDIRGCQYLRG---LPAGIRKLMNMRS  481 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~--~i~-~lp~~i~~L~~L~~L~l~~~~~l~~---lP~~i~~L~~L~~  481 (662)
                      .+..|.+.+..++.+ .++..|++|++|.++.|  .+. .++...-++++|++|++++|+ ++.   ++ .+.++.+|..
T Consensus        44 ~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~-pl~~l~nL~~  120 (260)
T KOG2739|consen   44 ELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLR-PLKELENLKS  120 (260)
T ss_pred             chhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-cccccccc-hhhhhcchhh
Confidence            333344443333333 23456778888888887  333 455555566888888888776 432   22 2456667777


Q ss_pred             EecCCCccccccC----CcCCCCCCCCccCceeecC
Q 044550          482 LLNDGTYLLKYMP----IGISRLTSLRTLEKFVVGG  513 (662)
Q Consensus       482 L~l~~~~~~~~~p----~~i~~L~~L~~L~~~~~~~  513 (662)
                      |++.+|.... +-    ..+.-|++|..|+.+.+..
T Consensus       121 Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~  155 (260)
T KOG2739|consen  121 LDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG  155 (260)
T ss_pred             hhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence            7777775422 11    1134456666666554443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=95.45  E-value=0.0069  Score=68.11  Aligned_cols=82  Identities=18%  Similarity=0.191  Sum_probs=55.7

Q ss_pred             hhcCcccccccc--cccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC--ccccccccccE
Q 044550          406 FSKLVFLRALRN--WIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRS  481 (662)
Q Consensus       406 ~~~l~~Lrvl~~--~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~  481 (662)
                      ++.++.|.+.+-  ...++..-..++++|+.||+|+++++.+ ..|++|+||++|-+++=. +..-+  ..+..|++|++
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCC-CCchhhHHHHhcccCCCe
Confidence            555555655531  1222223345678899999999998888 789999999999888644 33222  25678899999


Q ss_pred             EecCCCcc
Q 044550          482 LLNDGTYL  489 (662)
Q Consensus       482 L~l~~~~~  489 (662)
                      ||+|....
T Consensus       225 LDIS~~~~  232 (699)
T KOG3665|consen  225 LDISRDKN  232 (699)
T ss_pred             eecccccc
Confidence            99987644

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.03  E-value=0.021  Score=52.38  Aligned_cols=75  Identities=13%  Similarity=0.232  Sum_probs=45.7

Q ss_pred             CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccc-ccccccEEecCCCccccccC--CcCCCCCCCCcc
Q 044550          430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIR-KLMNMRSLLNDGTYLLKYMP--IGISRLTSLRTL  506 (662)
Q Consensus       430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~-~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L  506 (662)
                      -+...++|++|.+..++ .+..+..|.+|.+.+|. +..+-..+. .+++|..|.+.+|.+ ..+.  ..+..++.|+.|
T Consensus        42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNr-It~I~p~L~~~~p~l~~L~LtnNsi-~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNR-ITRIDPDLDTFLPNLKTLILTNNSI-QELGDLDPLASCPKLEYL  118 (233)
T ss_pred             cccceecccccchhhcc-cCCCccccceEEecCCc-ceeeccchhhhccccceEEecCcch-hhhhhcchhccCCcccee
Confidence            34556778888776664 36677788888888777 555544454 345688888877754 2221  123344555555


Q ss_pred             C
Q 044550          507 E  507 (662)
Q Consensus       507 ~  507 (662)
                      .
T Consensus       119 t  119 (233)
T KOG1644|consen  119 T  119 (233)
T ss_pred             e
Confidence            4

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.67  E-value=0.021  Score=54.68  Aligned_cols=81  Identities=21%  Similarity=0.327  Sum_probs=54.7

Q ss_pred             CCccceeeecCCCCcccchhhhcCCCccEEeccCC--CCCccCCccccccccccEEecCCCccccccCCc---CCCCCCC
Q 044550          429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGC--QYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG---ISRLTSL  503 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~--~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~---i~~L~~L  503 (662)
                      +..|.+|++.++.++.+ ..+-.|++|++|+++.|  .....++.-+.++++|++|++++|.+ + .+..   +..+.+|
T Consensus        42 ~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki-~-~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI-K-DLSTLRPLKELENL  118 (260)
T ss_pred             ccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc-c-cccccchhhhhcch
Confidence            45566666666665544 23456889999999998  54456666667789999999999975 2 2333   3455566


Q ss_pred             CccCceeec
Q 044550          504 RTLEKFVVG  512 (662)
Q Consensus       504 ~~L~~~~~~  512 (662)
                      ..|+++.+.
T Consensus       119 ~~Ldl~n~~  127 (260)
T KOG2739|consen  119 KSLDLFNCS  127 (260)
T ss_pred             hhhhcccCC
Confidence            666655443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=94.67  E-value=0.0023  Score=69.18  Aligned_cols=99  Identities=19%  Similarity=0.182  Sum_probs=71.2

Q ss_pred             CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCce
Q 044550          430 IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF  509 (662)
Q Consensus       430 ~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~  509 (662)
                      ..|...+.++|.+..+-.++.-|+.|+.|||++|+ +...- .+..+++|+||+++.|.. ..+|..-..=..|+.|.+.
T Consensus       164 n~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN~L-~~vp~l~~~gc~L~~L~lr  240 (1096)
T KOG1859|consen  164 NKLATASFSYNRLVLMDESLQLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYNCL-RHVPQLSMVGCKLQLLNLR  240 (1096)
T ss_pred             hhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhh-hhhhH-HHHhcccccccccccchh-ccccccchhhhhheeeeec
Confidence            45778889999999888899999999999999998 66664 688999999999999975 6777432111237777532


Q ss_pred             eecCccCCCCccCccccccCcccCccccc
Q 044550          510 VVGGGVDGGGTCRLESLKNLQLLRKCSIE  538 (662)
Q Consensus       510 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~  538 (662)
                        +|.     -..+..+.+|++|+.|+++
T Consensus       241 --nN~-----l~tL~gie~LksL~~LDls  262 (1096)
T KOG1859|consen  241 --NNA-----LTTLRGIENLKSLYGLDLS  262 (1096)
T ss_pred             --ccH-----HHhhhhHHhhhhhhccchh
Confidence              222     2345556666666666554

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=94.59  E-value=0.18  Score=48.84  Aligned_cols=49  Identities=20%  Similarity=0.097  Sum_probs=29.6

Q ss_pred             CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHH
Q 044550          214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAK  265 (662)
Q Consensus       214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~  265 (662)
                      ..+.+++|+.+++++++...+-..  ... +.-.+..++|...++|.|..|.
T Consensus       184 ~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P~~l~  232 (234)
T PF01637_consen  184 SHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNPRYLQ  232 (234)
T ss_dssp             -EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-HHHHH
T ss_pred             ceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCHHHHh
Confidence            459999999999999998865322  111 1124455999999999998775

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.46  E-value=0.015  Score=33.01  Aligned_cols=20  Identities=35%  Similarity=0.685  Sum_probs=11.2

Q ss_pred             CccEEeccCCCCCccCCcccc
Q 044550          454 NLQKLDIRGCQYLRGLPAGIR  474 (662)
Q Consensus       454 ~L~~L~l~~~~~l~~lP~~i~  474 (662)
                      +|++||+++|. ++.+|.+++
T Consensus         1 ~L~~Ldls~n~-l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNN-LTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSE-ESEEGTTTT
T ss_pred             CccEEECCCCc-CEeCChhhc
Confidence            35666666664 455555544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=93.95  E-value=0.068  Score=49.21  Aligned_cols=91  Identities=27%  Similarity=0.273  Sum_probs=60.8

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhc-CCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE-LYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKY  492 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~-L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~  492 (662)
                      +|.+..+ ..+..++.|..|.|.+|.|+.+-+.+.. +++|++|.+.+|. ++++-+  .+..+++|++|.+-+|.... 
T Consensus        51 dNdl~~l-~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Ltll~Npv~~-  127 (233)
T KOG1644|consen   51 DNDLRKL-DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLTLLGNPVEH-  127 (233)
T ss_pred             ccchhhc-ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceeeecCCchhc-
Confidence            3444444 3466788899999999999988666654 5569999999877 655532  35567888888887775321 


Q ss_pred             cC----CcCCCCCCCCccCce
Q 044550          493 MP----IGISRLTSLRTLEKF  509 (662)
Q Consensus       493 ~p----~~i~~L~~L~~L~~~  509 (662)
                      .+    --+.++++|++|+..
T Consensus       128 k~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen  128 KKNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             ccCceeEEEEecCcceEeehh
Confidence            11    125667777777643

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.86  E-value=0.04  Score=29.02  Aligned_cols=16  Identities=38%  Similarity=0.706  Sum_probs=6.1

Q ss_pred             ccceeeecCCCCcccc
Q 044550          431 HLKYLNLSELRIERIP  446 (662)
Q Consensus       431 ~Lr~L~L~~~~i~~lp  446 (662)
                      +|+.|++++|.++++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4555555555554443

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.69  E-value=0.024  Score=55.14  Aligned_cols=203  Identities=18%  Similarity=0.110  Sum_probs=96.1

Q ss_pred             CccceeeecCCCCcccch--hhh-cCCCccEEeccCCCCCccC---CccccccccccEEecCCCccccccCCcCCCC---
Q 044550          430 IHLKYLNLSELRIERIPE--TLC-ELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLKYMPIGISRL---  500 (662)
Q Consensus       430 ~~Lr~L~L~~~~i~~lp~--~i~-~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L---  500 (662)
                      .-+..|.+-++.|...-.  .|+ ..+.++.|||.+|. +...   -.-+.+|+.|+.|+++.|...    +.|+.+   
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~-iSdWseI~~ile~lP~l~~LNls~N~L~----s~I~~lp~p  119 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNL-ISDWSEIGAILEQLPALTTLNLSCNSLS----SDIKSLPLP  119 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccch-hccHHHHHHHHhcCccceEeeccCCcCC----CccccCccc
Confidence            344466666776654322  222 46788999999987 4332   223468999999999988542    223333   


Q ss_pred             -CCCCccCceeecCcc-CCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCC
Q 044550          501 -TSLRTLEKFVVGGGV-DGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRR  578 (662)
Q Consensus       501 -~~L~~L~~~~~~~~~-~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  578 (662)
                       .+|++|-  .++... .......+..++.++.|+ ++.+.+..+.--.++.+-    .  -+.+.+|+..-|..     
T Consensus       120 ~~nl~~lV--LNgT~L~w~~~~s~l~~lP~vtelH-mS~N~~rq~n~Dd~c~e~----~--s~~v~tlh~~~c~~-----  185 (418)
T KOG2982|consen  120 LKNLRVLV--LNGTGLSWTQSTSSLDDLPKVTELH-MSDNSLRQLNLDDNCIED----W--STEVLTLHQLPCLE-----  185 (418)
T ss_pred             ccceEEEE--EcCCCCChhhhhhhhhcchhhhhhh-hccchhhhhccccccccc----c--chhhhhhhcCCcHH-----
Confidence             4555552  111111 011122333333333332 111111000000000000    0  01122222221110     


Q ss_pred             CchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc--cccccCccEEEecCCCC--CCCCCCCCCcc-cceeecccccCcc
Q 044550          579 KNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW--LTSLTNLRELKLSLCVN--CEHLPPLGKLP-LEKLQLKNLKSVK  653 (662)
Q Consensus       579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~--i~~l~~L~~L~L~~~~~--~~~lp~l~~Lp-L~~l~l~~l~~L~  653 (662)
                        ..-........-+|++..+.+..++.......  ...++.+.-|.|+.++.  +.++..+..+| +.-|++.+-+-.+
T Consensus       186 --~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  186 --QLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             --HHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence              11112222234468888888888865543322  22566677778877752  23444456666 6666665554443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.66  E-value=0.0063  Score=58.38  Aligned_cols=79  Identities=23%  Similarity=0.256  Sum_probs=48.6

Q ss_pred             CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccccCCc-----CCC
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIG-----ISR  499 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~-----i~~  499 (662)
                      .+|+.|+.|.|+-|.|+.| ..+..+++|+.|.|+.|. +..+-.  -+.+|++|+.|-+..|.....-+..     +.-
T Consensus        38 ~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~  115 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV  115 (388)
T ss_pred             HhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence            3577777777777777776 446777777777777665 444422  2456677777777666543333322     445


Q ss_pred             CCCCCccC
Q 044550          500 LTSLRTLE  507 (662)
Q Consensus       500 L~~L~~L~  507 (662)
                      |++|+.|+
T Consensus       116 LPnLkKLD  123 (388)
T KOG2123|consen  116 LPNLKKLD  123 (388)
T ss_pred             cccchhcc
Confidence            66677666

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=92.35  E-value=0.48  Score=48.33  Aligned_cols=72  Identities=19%  Similarity=0.099  Sum_probs=47.8

Q ss_pred             CceEEEEcccHHHHhhhC--CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550          194 GSKIFVTTRNESVARMMG--STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN  269 (662)
Q Consensus       194 gSrIivTTR~~~v~~~~~--~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~  269 (662)
                      .+-|.+||+...+...+.  ....+.+++++.++..+++.+.+-.... ..   -.+....|++.|+|.|-.+..++.
T Consensus       130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~-~~---~~~al~~ia~~~~G~pR~~~~ll~  203 (305)
T TIGR00635       130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV-EI---EPEAALEIARRSRGTPRIANRLLR  203 (305)
T ss_pred             eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC-Cc---CHHHHHHHHHHhCCCcchHHHHHH
Confidence            445566777654443321  1347899999999999999988753221 11   135668899999999976654443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=92.35  E-value=0.088  Score=27.72  Aligned_cols=17  Identities=41%  Similarity=0.657  Sum_probs=9.0

Q ss_pred             CCccEEeccCCCCCccCC
Q 044550          453 YNLQKLDIRGCQYLRGLP  470 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP  470 (662)
                      ++|++|++++|+ ++.+|
T Consensus         1 ~~L~~L~l~~n~-L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSLP   17 (17)
T ss_dssp             TT-SEEEETSS---SSE-
T ss_pred             CccCEEECCCCC-CCCCc
Confidence            367777777777 66655

...

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=91.16  E-value=0.91  Score=46.82  Aligned_cols=71  Identities=23%  Similarity=0.110  Sum_probs=47.3

Q ss_pred             ceEEEEcccHHHHhhhC--CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550          195 SKIFVTTRNESVARMMG--STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN  269 (662)
Q Consensus       195 SrIivTTR~~~v~~~~~--~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~  269 (662)
                      +-|..||+...+...+.  ....+++.+++.++..+++.+.+-..+. ..   -.+....|++.|+|.|-.+..+..
T Consensus       152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~-~~---~~~~~~~ia~~~~G~pR~a~~~l~  224 (328)
T PRK00080        152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV-EI---DEEGALEIARRSRGTPRIANRLLR  224 (328)
T ss_pred             eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC-Cc---CHHHHHHHHHHcCCCchHHHHHHH
Confidence            44666777554443321  1347899999999999999988754322 11   235688999999999965554443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.10  E-value=0.24  Score=29.32  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=13.4

Q ss_pred             CCccceeeecCCCCcccchhh
Q 044550          429 LIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      |.+|++|+|++|.++.+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            355667777777766666643

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.10  E-value=0.24  Score=29.32  Aligned_cols=21  Identities=29%  Similarity=0.458  Sum_probs=13.4

Q ss_pred             CCccceeeecCCCCcccchhh
Q 044550          429 LIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      |.+|++|+|++|.++.+|+.+
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            355667777777766666643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=0.023  Score=54.74  Aligned_cols=76  Identities=20%  Similarity=0.215  Sum_probs=57.7

Q ss_pred             CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC--CcCCCCCCCCcc
Q 044550          429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP--IGISRLTSLRTL  506 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p--~~i~~L~~L~~L  506 (662)
                      +.+.+.|+..||.++.+ .-+.++..|++|.|+-|+ +..|-. +..+++|+.|+|..|.+ ..+-  .-+.++++|++|
T Consensus        18 l~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNk-IssL~p-l~rCtrLkElYLRkN~I-~sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNK-ISSLAP-LQRCTRLKELYLRKNCI-ESLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHHhhhhcccCCCccHH-HHHHhcccceeEEeeccc-cccchh-HHHHHHHHHHHHHhccc-ccHHHHHHHhcCchhhhH
Confidence            56677889999998866 446689999999999988 777743 78899999999998854 2222  125677888888


Q ss_pred             Cc
Q 044550          507 EK  508 (662)
Q Consensus       507 ~~  508 (662)
                      -+
T Consensus        94 WL   95 (388)
T KOG2123|consen   94 WL   95 (388)
T ss_pred             hh
Confidence            54

>PRK04841 transcriptional regulator MalT; Provisional

Probab=89.81  E-value=2.6  Score=50.24  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=82.2

Q ss_pred             CCCceEEEEcccHHHH---hhhCCCCeeeCC----CCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhH
Q 044550          192 LHGSKIFVTTRNESVA---RMMGSTNIISIK----QLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAA  264 (662)
Q Consensus       192 ~~gSrIivTTR~~~v~---~~~~~~~~~~l~----~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai  264 (662)
                      ..+-++|||||...-.   ..........+.    +++.+|+.++|....-. .      --.+...++.+.|+|.|+++
T Consensus       150 ~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~-~------~~~~~~~~l~~~t~Gwp~~l  222 (903)
T PRK04841        150 PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS-P------IEAAESSRLCDDVEGWATAL  222 (903)
T ss_pred             CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC-C------CCHHHHHHHHHHhCChHHHH
Confidence            4556788999974211   111112345555    89999999999765421 1      11345688999999999999


Q ss_pred             HHHHHhhcCCCC-HH--HH----------HHHHhhh-hhhhhh------hhcCcccCCCCchH-----HHHHHHHHHHHH
Q 044550          265 KVIGNLLRSKST-VK--EW----------QRILESE-MWKVLE------IGQGYLNAKEDEEM-----EMIGEECFNILA  319 (662)
Q Consensus       265 ~~ig~~L~~~~~-~~--~w----------~~~l~~~-~~~~~~------iaeg~i~~~~~~~~-----~~~~~~~~~~L~  319 (662)
                      ..++..+..... ..  .|          ...+... ...++.      ..-..+..-.....     .+-+...+++|.
T Consensus       223 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~~~~~~l~~~l~~~~~~~~~L~~l~  302 (903)
T PRK04841        223 QLIALSARQNNSSLHDSARRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLRSMNDALIVRVTGEENGQMRLEELE  302 (903)
T ss_pred             HHHHHHHhhCCCchhhhhHhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccccCCHHHHHHHcCCCcHHHHHHHHH
Confidence            988877654321 11  11          0111111 111111      00011111000000     112356788999


Q ss_pred             hcCcccccccCCCCCeeeEEcChHHHHHHHHhh
Q 044550          320 ARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVS  352 (662)
Q Consensus       320 ~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~  352 (662)
                      ..++|.....   +....|+.|++++++.....
T Consensus       303 ~~~l~~~~~~---~~~~~yr~H~L~r~~l~~~l  332 (903)
T PRK04841        303 RQGLFIQRMD---DSGEWFRYHPLFASFLRHRC  332 (903)
T ss_pred             HCCCeeEeec---CCCCEEehhHHHHHHHHHHH
Confidence            9998643221   11236888999999988764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.41  E-value=0.038  Score=51.78  Aligned_cols=76  Identities=17%  Similarity=0.110  Sum_probs=52.5

Q ss_pred             cccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550          412 LRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       412 Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~  488 (662)
                      |..+++.+..+-..+..+..|..|+++.+.+..+|+.++.+..+..+++..|. ...+|.+.++++++++++..++.
T Consensus        47 ld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   47 LDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             ehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhhccCc
Confidence            33334555555566666677777777777777777777777777777777665 67777777777777777776664

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=86.18  E-value=0.32  Score=46.95  Aligned_cols=41  Identities=20%  Similarity=0.260  Sum_probs=23.1

Q ss_pred             cccCCCCccceeeecCCCCc-ccch----hhhcCCCccEEeccCCC
Q 044550          424 ENVGKLIHLKYLNLSELRIE-RIPE----TLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       424 ~~i~~l~~Lr~L~L~~~~i~-~lp~----~i~~L~~L~~L~l~~~~  464 (662)
                      +.+-++++|+..+||.|.+. ..|+    -|++-++|.+|.+++|.
T Consensus        86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG  131 (388)
T COG5238          86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG  131 (388)
T ss_pred             HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC
Confidence            34455666777777766644 2222    34555566666666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=84.64  E-value=0.044  Score=51.38  Aligned_cols=48  Identities=10%  Similarity=0.057  Sum_probs=25.1

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~  464 (662)
                      +.+..+|+.++.+..++.+++..|+.+.+|.+.+++++++++++.++.
T Consensus        75 nq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~  122 (326)
T KOG0473|consen   75 NQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTE  122 (326)
T ss_pred             hhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCc
Confidence            344445555555555555555555555555555555555555555544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.96  E-value=0.87  Score=26.84  Aligned_cols=21  Identities=48%  Similarity=0.729  Sum_probs=13.7

Q ss_pred             CCCccEEeccCCCCCccCCccc
Q 044550          452 LYNLQKLDIRGCQYLRGLPAGI  473 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP~~i  473 (662)
                      |.+|++|++.+|. +..+|.++
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQ-LSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHH
Confidence            4567777777776 66666643

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.96  E-value=0.87  Score=26.84  Aligned_cols=21  Identities=48%  Similarity=0.729  Sum_probs=13.7

Q ss_pred             CCCccEEeccCCCCCccCCccc
Q 044550          452 LYNLQKLDIRGCQYLRGLPAGI  473 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP~~i  473 (662)
                      |.+|++|++.+|. +..+|.++
T Consensus         1 L~~L~~L~L~~N~-l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQ-LSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCc-CCcCCHHH
Confidence            4567777777776 66666643

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=83.80  E-value=8.1  Score=40.92  Aligned_cols=39  Identities=15%  Similarity=0.025  Sum_probs=28.1

Q ss_pred             cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc
Q 044550          141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI  181 (662)
Q Consensus       141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi  181 (662)
                      .++.++||+++.++|...+...-.  ......+-|+|+.|+
T Consensus        28 ~P~~l~~Re~e~~~l~~~l~~~~~--~~~~~~~lI~G~~Gt   66 (394)
T PRK00411         28 VPENLPHREEQIEELAFALRPALR--GSRPLNVLIYGPPGT   66 (394)
T ss_pred             cCCCCCCHHHHHHHHHHHHHHHhC--CCCCCeEEEECCCCC
Confidence            456799999999999999854321  113344568999998

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=82.88  E-value=0.25  Score=53.91  Aligned_cols=34  Identities=32%  Similarity=0.343  Sum_probs=21.2

Q ss_pred             CCccceeeecCCC-Ccc--cchhhhcCCCccEEeccC
Q 044550          429 LIHLKYLNLSELR-IER--IPETLCELYNLQKLDIRG  462 (662)
Q Consensus       429 l~~Lr~L~L~~~~-i~~--lp~~i~~L~~L~~L~l~~  462 (662)
                      ++.|+.|.+.++. +..  +-+....+.+|+.|++++
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~  223 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSG  223 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccC
Confidence            5666666666663 333  334556677777777776

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=81.82  E-value=0.14  Score=52.36  Aligned_cols=86  Identities=23%  Similarity=0.196  Sum_probs=48.6

Q ss_pred             ccccCCcEEEEecCCCCCCCCchhHHHHhhhCC-CCCCCcEEEEeecCCCC-C-Ccccc-cccCccEEEecCCCCCCC--
Q 044550          559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ-PPLNVEELEIESYRGNI-F-PKWLT-SLTNLRELKLSLCVNCEH--  632 (662)
Q Consensus       559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~-~~~~L~~L~l~~~~~~~-l-P~~i~-~l~~L~~L~L~~~~~~~~--  632 (662)
                      .+..|+.|..+.+..        ....++..+. ...+|+.|.+.++.... . -..++ +.+.|+.+++..|.....  
T Consensus       292 ~c~~lq~l~~s~~t~--------~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~t  363 (483)
T KOG4341|consen  292 GCHALQVLCYSSCTD--------ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGT  363 (483)
T ss_pred             hhhHhhhhcccCCCC--------CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhh
Confidence            456667776665543        2233444443 45889999999886311 0 01122 678899999998874421  


Q ss_pred             CCCC-CCcc-cceeecccccCc
Q 044550          633 LPPL-GKLP-LEKLQLKNLKSV  652 (662)
Q Consensus       633 lp~l-~~Lp-L~~l~l~~l~~L  652 (662)
                      +-.+ ..=| |+.+.+..|+..
T Consensus       364 L~sls~~C~~lr~lslshce~i  385 (483)
T KOG4341|consen  364 LASLSRNCPRLRVLSLSHCELI  385 (483)
T ss_pred             HhhhccCCchhccCChhhhhhh
Confidence            2211 2335 666666655543

>PRK06893 DNA replication initiation factor; Validated

Probab=80.99  E-value=5.6  Score=38.53  Aligned_cols=58  Identities=10%  Similarity=0.078  Sum_probs=42.9

Q ss_pred             HHHHhhhCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHH
Q 044550          204 ESVARMMGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAK  265 (662)
Q Consensus       204 ~~v~~~~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~  265 (662)
                      +++...+....+++++++++++.++++.++++..+- ..+   +++..-|++++.|-.-++.
T Consensus       144 ~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l-~l~---~~v~~~L~~~~~~d~r~l~  201 (229)
T PRK06893        144 PDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI-ELS---DEVANFLLKRLDRDMHTLF  201 (229)
T ss_pred             hhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC-CCC---HHHHHHHHHhccCCHHHHH
Confidence            477777777789999999999999999999974432 122   4666778888876554443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	662
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		1e-04

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 409 LVFLRALR-NW--IREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQY 465
           LV L++LR  W  IR +P ++  L +LK L +    +  +   +  L  L++LD+RGC  
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241
Query: 466 LRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507
           LR  P   G R  +  R +L D + LL  +P+ I RLT L  L+
Sbjct: 242 LRNYPPIFGGRAPLK-RLILKDCSNLLT-LPLDIHRLTQLEKLD 283

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	662
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-40
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	6e-10
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-31
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	2e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-15
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-07
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-05
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-05
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-05
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-09
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-05
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-06
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-06
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-06
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-04

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  153 bits (389), Expect = 8e-40
 Identities = 52/325 (16%), Positives = 105/325 (32%), Gaps = 66/325 (20%)

Query: 188 LKNGLHGSKIFVTTRNESVARMMGSTNIIS--IKQLAEEECWSLFKQLAFFGRSFEDREK 245
           LK      +I +TTR++SV   +     +      L +E+   +             +  
Sbjct: 251 LKAFDSQCQILLTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN-----MKKAD 305

Query: 246 LEPMGRKIARKCKGLPLAAKVIGNLLRSK-STVKEWQRILESEMWKVLEIGQGYLNAK-- 302
           L      I ++CKG PL   +IG LLR   +  + + + L+++ +K +     Y      
Sbjct: 306 LPEQAHSIIKECKGSPLVVSLIGALLRDFPNRWEYYLKQLQNKQFKRIRKSSSYDYEALD 365

Query: 303 -------------------------EDEEM------------EMIGEECFNILAARSFFQ 325
                                    +D ++                E+       +S   
Sbjct: 366 EAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLF 425

Query: 326 EFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQR 385
               + +       +HD+  DF    +  +   L      + +I  F    R+   +   
Sbjct: 426 ---CDRNGKSFRYYLHDLQVDFLTEKNCSQLQDL-----HKKIITQF---QRYHQPHTLS 474

Query: 386 GASF-PMSIHRFNRFSILS-ELFSKLVFLRALRNWIREIPENVGKLIHL-----KYLNLS 438
                 M  + F  + + S ++  +L  L    +WI+   E VG   HL     +Y ++ 
Sbjct: 475 PDQEDCMYWYNFLAYHMASAKMHKELCALMFSLDWIKAKTELVG-PAHLIHEFVEYRHIL 533

Query: 439 ELRIERIPETLCELYNLQKLDIRGC 463
           + +   + E   E  +L    +   
Sbjct: 534 DEKDCAVSENFQEFLSLNGHLLGRQ 558

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score = 61.4 bits (149), Expect = 6e-10
 Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 15/167 (8%)

Query: 19  EAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHK--KKVRS 76
              R  L   ++   + D   +  +D +   SD    I   +          +    ++ 
Sbjct: 3   AKARNCLLQHREALEK-DIKTSYIMDHMI--SDGFLTISEEEKVRNEPTQQQRAAMLIKM 59

Query: 77  FFCAVSNCFGSFKQLSLRHHIAVKIREISEKLDEIAARKDRFKFVENVSN-SVKKPERER 135
                ++ + SF    L        ++++  L +           ++VS  +        
Sbjct: 60  ILKKDNDSYVSFYNALLHE----GYKDLAALLHDGIPVVSSSSGKDSVSGITSYVRTVLC 115

Query: 136 TISLIDEGEV-CGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181
              +     V   R    N +  KL     + +     +++ G+ G 
Sbjct: 116 EGGVPQRPVVFVTRKKLVNAIQQKLS----KLKGEPGWVTIHGMAGC 158

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  128 bits (323), Expect = 2e-31
 Identities = 45/291 (15%), Positives = 85/291 (29%), Gaps = 72/291 (24%)

Query: 194 GSKIFVTTRNESVARMMGST-NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRK 252
             +  VTTR+  ++     T   I +  L  +EC+   +            EK E +  K
Sbjct: 265 RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGM---PMPVGEKEEDVLNK 321

Query: 253 IARKCKGLPLAAKVIGNLLRSKST--VKEWQRILESEMWKVLEIGQGY------------ 298
                 G P    +       K+   + +    LES     +E    Y            
Sbjct: 322 TIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRC 381

Query: 299 ------------------------------------LNAKEDEEMEMIGEECFNILAARS 322
                                               + + E+E+++    +    L+ R 
Sbjct: 382 VEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRG 441

Query: 323 FFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLG-L 381
                K      +++ K+  I+H F + V   + +         + I+     +  +G  
Sbjct: 442 ALLSGK---RMPVLTFKIDHIIHMFLKHVVDAQTI--------ANGISILEQRLLEIGNN 490

Query: 382 NFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHL 432
           N         S  +  R S  SE++ K      +R      PE+  K + L
Sbjct: 491 NVSVPERHIPSHFQKFRRSSASEMYPKTTEETVIR------PEDFPKFMQL 535

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score = 56.5 bits (136), Expect = 2e-08
 Identities = 20/169 (11%), Positives = 46/169 (27%), Gaps = 13/169 (7%)

Query: 18  LEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAPHKKKVRSF 77
            E     L  A  R +  D      L  L+  +   ED      +    ++   +++ +F
Sbjct: 3   CEIECRALSTAHTRLIH-DFEPRDALTYLEGKNIFTEDHS----ELISKMSTRLERIANF 57

Query: 78  FCAVSNCFGSFKQL--SLRHHIAVKIREISEKLDEIAARK---DRFKFVENVSNSVKKPE 132
                        L     ++    + +  E   + A  +    R   +    +      
Sbjct: 58  LRIYRRQASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDR 117

Query: 133 RERTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI 181
           +    ++  +     R    + ++ KL             + L G  G 
Sbjct: 118 KLLLGNVPKQMTCYIREYHVDRVIKKLD---EMCDLDSFFLFLHGRAGS 163

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  103 bits (256), Expect = 9e-23
 Identities = 100/678 (14%), Positives = 193/678 (28%), Gaps = 216/678 (31%)

Query: 27  DAKKRQMQH--DKAVTLWLDQLKDSSD--DMED-----IEAVDDDNALALAPHKKKVRSF 77
           D +  + Q+     ++++ D   D+ D  D++D     +   + D+ +            
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 78  FCAV----SNCFGSFKQLSLRHH-------IAVKIREISEKLDEIAARKD---------- 116
           F  +          F +  LR +       I  + R+ S        ++D          
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127

Query: 117 -----RFKFVENVSNSVKKPERERTISLIDEG-----------EVC-------------- 146
                R +    +  ++ +    + + +  +G           +VC              
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLI--DGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 147 ----GRVDEKNELLSKL--LC---ESSEQQKGLHVISL-VGLGGIEPFFLRL------KN 190
                  +    +L  L  L    + +   +  H  ++ + +  I+    RL      +N
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245

Query: 191 GL----------------HGSKIFVTTRNESVARMMGSTNIISI------KQLAEEECWS 228
            L                   KI +TTR + V   + +     I        L  +E  S
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 229 LFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEM 288
           L   L +     +D     P            P    +I   +R    +  W        
Sbjct: 306 LL--LKYLDCRPQD----LP-----REVLTTNPRRLSIIAESIRDG--LATWDNWKHVNC 352

Query: 289 WKVLEIGQGYLNAKEDEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFA 348
            K+  I +  LN  E  E      + F+ L+    F          I +  +        
Sbjct: 353 DKLTTIIESSLNVLEPAEY----RKMFDRLS---VFPP-----SAHIPTILL-------- 392

Query: 349 QFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSK 408
                   +W  +    +S +    + +    L  ++     +SI      SI  EL  K
Sbjct: 393 ------SLIWFDV---IKSDVMVVVNKLHKYSLVEKQPKESTISIP-----SIYLELKVK 438

Query: 409 LVFLRALRNWIRE-------------IPENVGKLI------HLKYLNLSELRIERIPETL 449
           L    AL   I +             IP  + +        HLK +   E R+       
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFR--- 494

Query: 450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKF 509
             ++    LD R   +L       +K+ +  +  N    +L       + L  L+  + +
Sbjct: 495 -MVF----LDFR---FLE------QKIRHDSTAWNASGSIL-------NTLQQLKFYKPY 533

Query: 510 VVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQ 569
           +     D      + ++ +   L K                  E L      +LLR+ L 
Sbjct: 534 ICDN--DPKYERLVNAILD--FLPKIE----------------ENLICSKYTDLLRIALM 573

Query: 570 F-GGDIEGRRKNEKDKQL 586
                I      E  KQ+
Sbjct: 574 AEDEAI----FEEAHKQV 587

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 84.6 bits (210), Expect = 5e-18
 Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 1/119 (0%)

Query: 388 SFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPE 447
             P  +   +       L   L  LR     IR +P ++  L +LK L +    +  +  
Sbjct: 165 ELPEPLASTDASGEHQGL-VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGP 223

Query: 448 TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
            +  L  L++LD+RGC  LR  P        ++ L+      L  +P+ I RLT L  L
Sbjct: 224 AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.9 bits (190), Expect = 2e-15
 Identities = 56/288 (19%), Positives = 93/288 (32%), Gaps = 73/288 (25%)

Query: 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKY 434
               L L       FP    R           S L  +      + E+P+ + +   L+ 
Sbjct: 82  GRVALELRSVPLPQFPDQAFRL----------SHLQHMTIDAAGLMELPDTMQQFAGLET 131

Query: 435 LNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLM------NMRSL--LNDG 486
           L L+   +  +P ++  L  L++L IR C  L  LP  +           + +L  L   
Sbjct: 132 LTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLE 191

Query: 487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL----KNLQLLRKCSIEGLKG 542
              ++ +P  I+ L +L++L+       +       L +L     +L  L +  + G   
Sbjct: 192 WTGIRSLPASIANLQNLKSLK-------IRN---SPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 543 LSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIE 602
           L N                 L RL L+             D   L  L            
Sbjct: 242 LRNYP--PIFGGR-----APLKRLILK-------------DCSNLLTL------------ 269

Query: 603 SYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKN 648
                  P  +  LT L +L L  CVN   LP  + +LP    + +  
Sbjct: 270 -------PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPP 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 66.2 bits (162), Expect = 2e-11
 Identities = 24/130 (18%), Positives = 44/130 (33%), Gaps = 21/130 (16%)

Query: 397 NRFS-ILSELFSKLVFLRAL-----------RNWIREIPENVGKLIHLKYLNLSELRIER 444
           N+ S    ELFS    L ++           +N +++  EN      L  ++L   ++ +
Sbjct: 443 NQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

Query: 445 IPETL--CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL------LNDGTYLLKYMPIG 496
           + +      L  L  +D+         P        ++           G   L+  P G
Sbjct: 503 LSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEG 561

Query: 497 ISRLTSLRTL 506
           I+   SL  L
Sbjct: 562 ITLCPSLTQL 571

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 33/279 (11%), Positives = 75/279 (26%), Gaps = 43/279 (15%)

Query: 395 RFNRFSILS--ELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL 449
            +N            K+  L  L    N +       G  I L  LNL+  +I  IP   
Sbjct: 313 GYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANF 372

Query: 450 CE-LYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSL-LND------GTYLLKYMPIGISR 499
           C     ++ L     + L+ +P     + +  M ++  +              +     +
Sbjct: 373 CGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFK 431

Query: 500 LTSLRTLE----KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERL 555
             ++ ++     +                 L ++ L     +  +   S     +  +  
Sbjct: 432 GINVSSINLSNNQI---SKFPKELFSTGSPLSSINL-MGNMLTEIPKNSLKDENENFKNT 487

Query: 556 QLYNKKNLLRLGL---QFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW 612
                  L  + L   +     +  R        L  L   +++            FP  
Sbjct: 488 -----YLLTSIDLRFNKLTKLSDDFRATT-----LPYLVG-IDLSYNSFSK-----FPTQ 531

Query: 613 LTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKS 651
             + + L+   +    + +    L + P       +L  
Sbjct: 532 PLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQ 570

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.0 bits (125), Expect = 5e-07
 Identities = 12/164 (7%), Positives = 44/164 (26%), Gaps = 32/164 (19%)

Query: 400 SILSELFSKLVFLRALRNWIR------EIPENVGKLIHLKYLNLSELRIERIPETLCELY 453
           + +     +  F   +++ I        I ++    +    +      I  + + +  L 
Sbjct: 148 TFVDYD-PREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLT 206

Query: 454 NLQKLDIRGCQ-------------------YLRGLPAGIRKLMNMRSLLNDGTYLLKYMP 494
            L++  +                         +        L ++  +       L  +P
Sbjct: 207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP 266

Query: 495 IGISRLTSLRTLE----KFVVGGGVDGGGT--CRLESLKNLQLL 532
             +  L  ++ +     + + G  +             + +Q++
Sbjct: 267 TFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII 310

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 397 NRFSILSELFSKLVFLRALR----------NWIREIPENVGKLIHLKYLNLSELRIERIP 446
           N FS           L+               +RE PE +     L  L +    I ++ 
Sbjct: 523 NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 447 ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLL 483
           E +    N+  LDI+    +    + +   +     +
Sbjct: 583 EKITP--NISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 23/247 (9%), Positives = 66/247 (26%), Gaps = 49/247 (19%)

Query: 421 EIPENVGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRGLPAGI-- 473
            +P+ +G+L  L+ L L     +       P+ +    + ++       Y +        
Sbjct: 96  RVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPR 155

Query: 474 RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGT------CRLESLK 527
               ++     +     K +            +      G +    T       RL  L+
Sbjct: 156 EDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI------GQLSNNITFVSKAVMRLTKLR 209

Query: 528 NLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLL 587
               +               +            +      L++                L
Sbjct: 210 QFY-MGNSPFVAENICEAWEN------ENSEYAQQYKTEDLKWDN--------------L 248

Query: 588 EALQPPLNVEELEIESYRGN-IFPKWLTSLTNLRELKLSLC--VNCEHLPPLGKLPLEKL 644
           + L       ++E+ +       P +L +L  ++ + ++    ++ E L    +   +  
Sbjct: 249 KDLT------DVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAP 302

Query: 645 QLKNLKS 651
             + ++ 
Sbjct: 303 VGEKIQI 309

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 31/273 (11%), Positives = 67/273 (24%), Gaps = 72/273 (26%)

Query: 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIRE--IPENVGKLIHL 432
            ++ + +   RG S       +   +       K+  +    N ++   +  ++ K+  L
Sbjct: 274 EMQLINVACNRGISGEQLKDDWQALADAPVG-EKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 433 KYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL--- 489
             L     ++E           L  L++   Q +  +PA          +      L   
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASLNLAYNQ-ITEIPANF--CGFTEQV----ENLSFA 385

Query: 490 ---LKYMP--IGISRLTSLRTLE----KFV-VGGGVDGGGTCRLESLKNLQLLR--KCSI 537
              LKY+P       ++ +  ++    +   V G              N+  +      I
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 538 EGL-----KGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQP 592
                      S +        + L    N+L                            
Sbjct: 446 SKFPKELFSTGSPL------SSINLMG--NMLT--------------------------- 470

Query: 593 PLNVEELEIESYRGNIFPKWLTSLTNLRELKLS 625
                  EI         +   +   L  + L 
Sbjct: 471 -------EIPKNSLKDENENFKNTYLLTSIDLR 496

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 36/247 (14%), Positives = 75/247 (30%), Gaps = 39/247 (15%)

Query: 411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRG----CQY 465
           F + L  W  +   ++     +  L+L       R+P+ + +L  L+ L +         
Sbjct: 62  FNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNE 121

Query: 466 LRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGG--TCRL 523
               P GI   M+         +  K       R      L K  +              
Sbjct: 122 RLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD-LIKDCINSDPQQKSIKKSSR 180

Query: 524 ESLKNLQL-LRKCSIEGL-KGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNE 581
            +LK+ Q+     +I  + K +  ++    + +  + N  +       F  +        
Sbjct: 181 ITLKDTQIGQLSNNITFVSKAVMRLTK---LRQFYMGN--S------PFVAEN------- 222

Query: 582 KDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP 640
                   +      E  E              +L +L ++++  C N   LP  L  LP
Sbjct: 223 --------ICEAWENENSEYAQQYKTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALP 273

Query: 641 -LEKLQL 646
            ++ + +
Sbjct: 274 EMQLINV 280

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 65.0 bits (158), Expect = 3e-11
 Identities = 31/166 (18%), Positives = 52/166 (31%), Gaps = 37/166 (22%)

Query: 371 SFGDNVRHLGLNFQRGASFPMSIH-------RFNRFSILSELFSKLVFLRALRNWIREIP 423
           +    +  L +      S P             NR S L EL + L  L    N +  +P
Sbjct: 77  NLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLP 136

Query: 424 ENVGKLIHLKYLNLSELRIERIPETLCELY-----------------NLQKLDIRGCQYL 466
           E       L+Y+N    ++  +PE    L                  +L+ LD+     L
Sbjct: 137 ELPAL---LEYINADNNQLTMLPELPTSLEVLSVRNNQLTFLPELPESLEALDVSTNL-L 192

Query: 467 RGLPAGIRKLMNMRSLLNDGTYL------LKYMPIGISRLTSLRTL 506
             LPA   +  +         +       + ++P  I  L    T+
Sbjct: 193 ESLPAVPVRNHHSEETE---IFFRCRENRITHIPENILSLDPTCTI 235

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.7 bits (134), Expect = 3e-08
 Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 5/109 (4%)

Query: 395 RFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLK----YLNLSELRIERIPETLC 450
           R N+ + L EL   L  L    N +  +P    +  H +    +    E RI  IPE + 
Sbjct: 168 RNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENIL 227

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISR 499
            L     + +     L             +   +             + 
Sbjct: 228 SLDPTCTIILEDNP-LSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNT 275

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 45.3 bits (107), Expect = 5e-05
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 399 FSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKL 458
           FS   +   K       RN    + +    +     L L+ L +  +P+ L     +  L
Sbjct: 30  FSAWDKW-EKQALPGENRNEAVSLLKE-CLINQFSELQLNRLNLSSLPDNLPP--QITVL 85

Query: 459 DIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR 504
           +I     L  LP     L  + +  N     L  +P   + L  L 
Sbjct: 86  EITQNA-LISLPELPASLEYLDACDN----RLSTLPELPASLKHLD 126

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 45/352 (12%), Positives = 90/352 (25%), Gaps = 85/352 (24%)

Query: 357 LWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALR 416
              + +  +      F D  + L L+     +              S +  K   +  L 
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAI-NRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 417 NWIREIPENVGKLIHLKYLNLSE--------------------LRIERIPETLCELYNLQ 456
           N I  I + + +L  L+ +  +                      + E    +   L +L 
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 457 KLDIRGCQYLRGLPAGIRKLMNMRSL---------LNDGTYLLKYMPIGISRLTSLRTL- 506
            +++  C  +  LP  +  L  ++SL                   +         ++   
Sbjct: 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFY 554

Query: 507 ------EKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSN--VSHVDEVERLQLY 558
                 E+F             L+ +  L LL            +  V H++        
Sbjct: 555 MGYNNLEEFPASAS--------LQKMVKLGLLD---------CVHNKVRHLEAFGTN--- 594

Query: 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL-----NVEELEIESYRGNIFPKW- 612
               L  L L +         N+     +E +          VE L     +    P   
Sbjct: 595 --VKLTDLKLDY---------NQ-----IEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIF 638

Query: 613 -LTSLTNLRELKLSLCVNC-EHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI 662
              S+  +  +  S   N            ++  +  N  +V    NE    
Sbjct: 639 NAKSVYVMGSVDFSY--NKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.6 bits (139), Expect = 9e-09
 Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 20/124 (16%)

Query: 397 NRFSILSELFSKLVFLRAL---RNWIREIPEN--VGKLIHLKYLNLSELRIERIPETLCE 451
           N        +     L  +    N +  + ++     L +L  +++S       P     
Sbjct: 715 NSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLN 774

Query: 452 LYNLQKLDIRGCQYLRG------LPAGIRKLMNMRSLL---NDGTYLLKYMPIGISRLTS 502
              L+   IR  +   G       P GI    ++  L    ND    ++ +   +     
Sbjct: 775 SSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND----IRKVDEKL--TPQ 828

Query: 503 LRTL 506
           L  L
Sbjct: 829 LYIL 832

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 30/261 (11%), Positives = 78/261 (29%), Gaps = 32/261 (12%)

Query: 411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGL 469
           F + L  W  +   ++     +  L+L+    + R+P+ + +L  L+ L           
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHS-ETVS 362

Query: 470 PAGI--RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVG-GGVDGGGTCRLESL 526
                  +L    S        + Y  + +     L   +               + +S 
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSR 422

Query: 527 KNLQLLRKCSIEGLKGLSNVSHV--DEVERLQLYNKKNLLRLGLQ------FGGDIEGRR 578
            +L+  +      +  L+N        ++RL       L  +             ++   
Sbjct: 423 ISLKDTQ------IGNLTNRITFISKAIQRL-----TKLQIIYFANSPFTYDNIAVDWED 471

Query: 579 KNEKDKQLLEALQPPL----NVEELEIESYRG-NIFPKWLTSLTNLRELKLS---LCVNC 630
            N    +  E  +       ++ ++E+ +       P +L  L  L+ L ++        
Sbjct: 472 ANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAA 531

Query: 631 EHLPPLGKLPLEKLQLKNLKS 651
           +      +L  ++     ++ 
Sbjct: 532 QLKADWTRLADDEDTGPKIQI 552

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 32/271 (11%), Positives = 67/271 (24%), Gaps = 70/271 (25%)

Query: 375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENV--GKLIHL 432
            ++ L +   RG S       + R +   +   K+       N + E P +    K++ L
Sbjct: 516 ELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKL 575

Query: 433 KYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL--- 489
             L+    ++  +         L  L +   Q +  +P           +      L   
Sbjct: 576 GLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQ-IEEIPEDF--CAFTDQV----EGLGFS 627

Query: 490 ---LKYMP--IGISRLTSLRTLE------KFVVGGGVDGGGTCRLESLKNLQL----LRK 534
              LKY+P       +  + +++                    +  +   + L    ++K
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 535 CSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL 594
              E     S +        + L N  NL+                              
Sbjct: 688 FPTELFATGSPI------STIILSN--NLMT----------------------------- 710

Query: 595 NVEELEIESYRGNIFPKWLTSLTNLRELKLS 625
                 I             +   L  + L 
Sbjct: 711 -----SIPENSLKPKDGNYKNTYLLTTIDLR 736

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 41/271 (15%), Positives = 80/271 (29%), Gaps = 55/271 (20%)

Query: 395 RFNRFSILSELFSKLVFLRAL---RNWIREIPENVGK-LIHLKYLNLSELRIERIPET-- 448
             N+   L   F   V L  L    N I EIPE+       ++ L  S  +++ IP    
Sbjct: 581 VHNKVRHLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFN 639

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN------DGTYLLKYMPIGISRLTS 502
              +Y +  +D    + +      I   M+    +N          + K+     +  + 
Sbjct: 640 AKSVYVMGSVDFSYNK-IGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSP 698

Query: 503 LRTLEKFVVGGGVDGGGTCRLESL-KNLQLLRKCSIEGLKGLSNVSHVDEVERLQL-YNK 560
           + T+        +       + S+ +N    +  + +    L           + L +NK
Sbjct: 699 ISTII-------LSN---NLMTSIPENSLKPKDGNYKNTYLL---------TTIDLRFNK 739

Query: 561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLR 620
              L    +                 L  L   ++V      S     FP    + + L+
Sbjct: 740 LTSLSDDFRATT--------------LPYLSN-MDVSYNCFSS-----FPTQPLNSSQLK 779

Query: 621 ELKLSLCVNCEHLPPLGKLPLEKLQLKNLKS 651
              +    + E    L + P       +L  
Sbjct: 780 AFGIRHQRDAEGNRILRQWPTGITTCPSLIQ 810

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 43.3 bits (102), Expect = 3e-04
 Identities = 43/271 (15%), Positives = 72/271 (26%), Gaps = 69/271 (25%)

Query: 421 EIPENVGKLIHLKYLNLS--------------------------ELRIERIPETLCELYN 454
            +P+ +G+L  LK L+                             +R+      L     
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQR 397

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSL----LNDGTYLLKYMPIGISRLTSLRTLE--- 507
           L   D+      R       K  +  SL    + + T  + ++   I RLT L+ +    
Sbjct: 398 LNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFAN 457

Query: 508 -KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL 566
             F              +  K  +     S   LK L           ++LYN  N+ +L
Sbjct: 458 SPFTYDNIAVDWEDANSDYAKQYENEEL-SWSNLKDL---------TDVELYNCPNMTQL 507

Query: 567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNV-----EELEIESYRGNIFPKWLTSLTNLRE 621
                               L  LQ  LN+                       +   ++ 
Sbjct: 508 PDFLYD--------------LPELQ-SLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 622 LKLSLCVNCEHLPP---LGKLP-LEKLQLKN 648
             +    N E  P    L K+  L  L   +
Sbjct: 553 FYMGYN-NLEEFPASASLQKMVKLGLLDCVH 582

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 61.8 bits (150), Expect = 4e-10
 Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 32/172 (18%)

Query: 359 LQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIH-------RFNRFSILSELFSKLVF 411
           L I G + + +      ++ L ++  + AS P             N+ + L  L S L  
Sbjct: 126 LWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPSGLQE 185

Query: 412 LRALRNWIREIPENVGKLIHL-----------------KYLNLSELRIERIPETLCELYN 454
           L    N +  +P    +L  L                 K L +S  R+  +P        
Sbjct: 186 LSVSDNQLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPS---E 242

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L++L + G + L  LP     L+++    N     L  +P  +  L+S  T+
Sbjct: 243 LKELMVSGNR-LTSLPMLPSGLLSLSVYRNQ----LTRLPESLIHLSSETTV 289

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 60.3 bits (146), Expect = 1e-09
 Identities = 29/149 (19%), Positives = 50/149 (33%), Gaps = 32/149 (21%)

Query: 370 NSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKL 429
           +    ++  L +               N  + L  L  +L  L    N +  +P     L
Sbjct: 57  DCLPAHITTLVIPD-------------NNLTSLPALPPELRTLEVSGNQLTSLPVLPPGL 103

Query: 430 IHLKYLNLSELRIERIPETLCELY--------------NLQKLDIRGCQYLRGLPAGIRK 475
           + L   +     +  +P  LC+L+               LQ+L +   Q L  LPA   +
Sbjct: 104 LELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSE 162

Query: 476 LMNMRSLLNDGTYLLKYMPIGISRLTSLR 504
           L  + +  N     L  +P+  S L  L 
Sbjct: 163 LCKLWAYNNQ----LTSLPMLPSGLQELS 187

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 7e-07
 Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 4/77 (5%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLD 459
           ++   L + +  L    N +  +P        L+ L +S  ++  +P     L  L    
Sbjct: 54  TLPDCLPAHITTLVIPDNNLTSLPALPP---ELRTLEVSGNQLTSLPVLPPGLLELSIFS 110

Query: 460 IRGCQYLRGLPAGIRKL 476
                 L  LP+G+ KL
Sbjct: 111 NPLTH-LPALPSGLCKL 126

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 46.4 bits (110), Expect = 2e-05
 Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 8/140 (5%)

Query: 375 NVRHLGLNFQRGASFPMSIH-------RFNRFSILSELFSKLVFLRALRNWIREIPENVG 427
            ++ L ++  R  S P+            NR + L  L S L+ L   RN +  +PE++ 
Sbjct: 222 GLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPMLPSGLLSLSVYRNQLTRLPESLI 281

Query: 428 KLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT 487
            L     +NL    +                            A   +      L     
Sbjct: 282 HLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA-D 340

Query: 488 YLLKYMPIGISRLTSLRTLE 507
           +L+       +         
Sbjct: 341 WLVPAREGEPAPADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 21/110 (19%), Positives = 34/110 (30%), Gaps = 20/110 (18%)

Query: 411 FLRALRNWIREIP-------ENVGKLI------HLKYLNLSELRIERIPETLCELYNLQK 457
           +      W R  P         V + +          LN+ E  +  +P+ L    ++  
Sbjct: 8   YDAVWSAWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPA--HITT 65

Query: 458 LDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507
           L I     L  LPA   +L  +    N     L  +P+    L  L    
Sbjct: 66  LVIPDNN-LTSLPALPPELRTLEVSGN----QLTSLPVLPPGLLELSIFS 110

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare} Length = 115

 Score = 55.6 bits (134), Expect = 1e-09
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 4/100 (4%)

Query: 1   VRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQH-DKAVTLWLDQLKDSSDDMEDIEAV 59
            +L  GV + ++ L   LE++ A L    +   +  D    LW D++++ S  +ED+  V
Sbjct: 18  FKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDV--V 75

Query: 60  DDDNALALAPHKKKVRSFFCA-VSNCFGSFKQLSLRHHIA 98
           D               + F   +       K++  +H IA
Sbjct: 76  DKFLVQVDGIKSDDNNNKFKGLMKRTTELLKKVKHKHGIA 115

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 59.2 bits (144), Expect = 2e-09
 Identities = 51/276 (18%), Positives = 85/276 (30%), Gaps = 67/276 (24%)

Query: 397 NRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY--- 453
              S L EL   L  L A  N + E+PE    L  L   N +   +  +P  L  L    
Sbjct: 81  LGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSN 140

Query: 454 -------------NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRL 500
                         L+ +D+     L+ LP     L  + +  N     L+ +P  +  L
Sbjct: 141 NQLEKLPELQNSSFLKIIDVDNNS-LKKLPDLPPSLEFIAAGNNQ----LEELP-ELQNL 194

Query: 501 TSLRTLEKFVVGGGVDGGGTCRLESL----KNLQLLRKCSIEGLKGLSN--VSHVDEVER 554
             L  +         D      L+ L     +L+ +            N  +  + E++ 
Sbjct: 195 PFLTAIY-------ADN---NSLKKLPDLPLSLESIV---------AGNNILEELPELQN 235

Query: 555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL-NVEELEIESYRGNIFPKWL 613
           L       L  +             N      L+ L     ++E L +        P+  
Sbjct: 236 L-----PFLTTIYA---------DNNL-----LKTLPDLPPSLEALNVRDNYLTDLPELP 276

Query: 614 TSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNL 649
            SLT L   +       E  P L  L     ++++L
Sbjct: 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL 312

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 54.2 bits (131), Expect = 8e-08
 Identities = 56/303 (18%), Positives = 93/303 (30%), Gaps = 64/303 (21%)

Query: 395 RFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLC---- 450
             N    L +L   L F+ A  N + E+PE +  L  L  +      ++++P+       
Sbjct: 161 DNNSLKKLPDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLSLES 219

Query: 451 ---------------ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI 495
                           L  L  +       L+ LP     L  +    N  T L    P 
Sbjct: 220 IVAGNNILEELPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNYLTDL----PE 274

Query: 496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLR---KCSIEGLKGLS--NVSH-- 548
               LT L   E          G +    +L  L       +   +    L   NVS+  
Sbjct: 275 LPQSLTFLDVSENIF------SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 328

Query: 549 -------VDEVERLQL-YNK--------KNLLRLGL------QFGGDIEGRRKNEKDKQL 586
                     +ERL   +N         +NL +L +      +F    E       +  L
Sbjct: 329 LIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHL 388

Query: 587 LEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQL 646
            E  + P N+++L +E+     FP    S+ +LR     +               +KL+ 
Sbjct: 389 AEVPELPQNLKQLHVETNPLREFPDIPESVEDLRMNSERVV----DPYEFAHETTDKLED 444

Query: 647 KNL 649
              
Sbjct: 445 DVF 447

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 44/256 (17%), Positives = 77/256 (30%), Gaps = 63/256 (24%)

Query: 397 NRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQ 456
           N  + L EL   L  L    N ++ + +    L   +YL +S  ++E++PE L     L+
Sbjct: 101 NSLTELPELPQSLKSLLVDNNNLKALSDLPPLL---EYLGVSNNQLEKLPE-LQNSSFLK 156

Query: 457 KLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD 516
            +D+     L+ LP     L  + +  N     L+ +P  +  L  L  +          
Sbjct: 157 IIDVDNNS-LKKLPDLPPSLEFIAAGNNQ----LEELP-ELQNLPFLTAIY--------- 201

Query: 517 GGGTCRLESLKNLQLLRKCSIEGL-KGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575
                              S++ L     ++      E +   N  N+L           
Sbjct: 202 ---------------ADNNSLKKLPDLPLSL------ESIVAGN--NILEE--------- 229

Query: 576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP 635
                      L  LQ    +  +  ++      P    SL  L      L    E    
Sbjct: 230 -----------LPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQS 278

Query: 636 LGKLPLEKLQLKNLKS 651
           L  L + +     L  
Sbjct: 279 LTFLDVSENIFSGLSE 294

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 58.6 bits (142), Expect = 4e-09
 Identities = 52/291 (17%), Positives = 95/291 (32%), Gaps = 37/291 (12%)

Query: 396 FNRFSILSE--LFSKLVFLRALR----NWIREIPENV-GKLIHLKYLNLSELRIERI-PE 447
            N +  L    LF  L  L+ LR        EI       L  L  L +  L +     +
Sbjct: 107 GNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166

Query: 448 TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           +L  + ++  L +   +    L       L ++R L    T L ++    +        +
Sbjct: 167 SLKSIRDIHHLTLHLSE-SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 507 EKFVVGGGVDGGGTCR--------LESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY 558
           +K    G V    +          +  L  ++    C++ GL   +  S  D V  L   
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVEFDD-CTLNGLGDFNP-SESDVVSELGKV 283

Query: 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLT 617
               + RL +          +      L         V+ + +E+ +   +   +   L 
Sbjct: 284 ETVTIRRLHIP---------QFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLK 334

Query: 618 NLRELKLSLC----VNCEHLPPLGKLP-LEKLQLKN--LKSVKRVGNEFLG 661
           +L  L LS         ++    G  P L+ L L    L+S+++ G   L 
Sbjct: 335 SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 47/273 (17%), Positives = 94/273 (34%), Gaps = 28/273 (10%)

Query: 396 FNRFS-ILSELFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIP-ETL 449
           FN+ + I          L+ L    + I  I  +    L  L++L+LS+  +  +     
Sbjct: 35  FNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWF 94

Query: 450 CELYNLQKLDIRGCQYLR-GLPAGIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLE 507
             L +L+ L++ G  Y   G+ +    L N+++L          +     + LTSL  LE
Sbjct: 95  GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 508 -KFVVGGGVDGGGTCRLESLKNLQL----LRKCSIEGLKGLSNVSHVD----EVERLQLY 558
            K +            +  + +L L               LS+V +++     + R Q  
Sbjct: 155 IKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 559 NKKNLLRL-GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLT 617
                     ++          +E   +LL+ L+  L + E+E +            +L 
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDC----------TLN 264

Query: 618 NLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLK 650
            L +   S       L  +  + + +L +    
Sbjct: 265 GLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 27/130 (20%), Positives = 51/130 (39%), Gaps = 19/130 (14%)

Query: 391 MSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGK-LIHLKYLNLSELRIERIP 446
           + I +F  F  LS ++S L  ++ +    + +  +P +  + L  L++L+LSE  +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY 350

Query: 447 ETLCE----LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL------LKYMPIG 496
                      +LQ L +     LR +      L+ +++L    T L         MP  
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNL----TSLDISRNTFHPMPDS 405

Query: 497 ISRLTSLRTL 506
                 +R L
Sbjct: 406 CQWPEKMRFL 415

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 48.2 bits (115), Expect = 6e-06
 Identities = 45/270 (16%), Positives = 86/270 (31%), Gaps = 52/270 (19%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLCELYNLQK 457
           SI S L + +  L    N I  I         +L+ L L   RI  I  +    L +L+ 
Sbjct: 19  SIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEH 78

Query: 458 LDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLEKFVVGGGV 515
           LD+     L  L +     L +++ L   G              LT+L+TL         
Sbjct: 79  LDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL--------- 128

Query: 516 DGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE 575
                 R+ +++    +R+    GL  L           L++      LR       + +
Sbjct: 129 ------RIGNVETFSEIRRIDFAGLTSL---------NELEIKA--LSLR-------NYQ 164

Query: 576 GRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLS-LCVNCEHL 633
                       ++L+   ++  L +       +   +   L+++R L+L    +     
Sbjct: 165 S-----------QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQF 213

Query: 634 PPLGKLP-LEKLQLKNLKSVKRVGNEFLGI 662
            PL        ++    +        F  +
Sbjct: 214 SPLPVDEVSSPMKKLAFRGSVLTDESFNEL 243

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 18/107 (16%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 403 SELFSKLVFLRAL---RNWIREIPENVG---KLIHLKYLNLSELRIERIPETLCELYNLQ 456
           S        L+ L   +N +R + +       L +L  L++S      +P++      ++
Sbjct: 354 SACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMR 413

Query: 457 KLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL 503
            L++     +R +   I     +  L       L    + + RL  L
Sbjct: 414 FLNLSSTG-IRVVKTCI--PQTLEVLDVSNNN-LDSFSLFLPRLQEL 456

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 40/201 (19%), Positives = 70/201 (34%), Gaps = 42/201 (20%)

Query: 334 DIMSCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGD-----NVRHLGLNFQRGAS 388
            + + K+  +   F+Q + S E L L  N   E  + +        +++ L L+     S
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 389 FPMSIHRF-------------NRFSILSELFSKLVFLRALR---NWIREIPENVGKLIHL 432
              +                 N F  + +       +R L      IR +   +     L
Sbjct: 376 MQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTL 433

Query: 433 KYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL--- 489
           + L++S   ++        L  LQ+L I   + L+ LP           L      +   
Sbjct: 434 EVLDVSNNNLDSFSL---FLPRLQELYISRNK-LKTLPDA----SLFPVL----LVMKIS 481

Query: 490 ---LKYMPIGI-SRLTSLRTL 506
              LK +P GI  RLTSL+ +
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKI 502

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 41/342 (11%), Positives = 101/342 (29%), Gaps = 70/342 (20%)

Query: 337 SCKMHDIVHDFAQFVSSKECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRF 396
             +   ++  FA  +SS   L L+         +    +     +         ++   F
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 397 NRFSILSELFSKLVF----------LRALRNWIREIPENVGKL--IHLKYLNLSELRIER 444
           N    L     +L            L        ++   +GK+  + ++ L++ +  +  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 445 IPE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLL------NDGTYLLKYMPIGI 497
                   L  ++++ +   + +  +P       +++SL       N             
Sbjct: 301 DLSTVYSLLEKVKRITVENSK-VFLVPCSF--SQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 498 SRLTSLRTLE------KFVVGGGVDGGGTCRLESLKNLQL----LRKCSIEGLKGLSNVS 547
               SL+TL       + +      G     L++L +L +          +  +    + 
Sbjct: 358 GAWPSLQTLVLSQNHLRSM---QKTGEILLTLKNLTSLDISRNTFHPMP-DSCQWPEKMR 413

Query: 548 HVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN 607
            ++    L       +++  +                        P  +E L++ +   +
Sbjct: 414 FLN----LS-STGIRVVKTCI------------------------PQTLEVLDVSNNNLD 444

Query: 608 IFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
            F      L  L+EL +S     + LP     P L  +++  
Sbjct: 445 SFS---LFLPRLQELYISRN-KLKTLPDASLFPVLLVMKISR 482

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.6 bits (140), Expect = 5e-09
 Identities = 55/274 (20%), Positives = 96/274 (35%), Gaps = 47/274 (17%)

Query: 395 RFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE 451
             N+ + +S     L  LR L    + I +I   +  L  +  LNL           L  
Sbjct: 96  GTNKITDISA-LQNLTNLRELYLNEDNISDIS-PLANLTKMYSLNLGANHNLSDLSPLSN 153

Query: 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVV 511
           +  L  L +   + ++ +   I  L ++ SL  +   +       IS L SL +L  F  
Sbjct: 154 MTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-----EDISPLASLTSLHYFTA 206

Query: 512 GG----GVDGGGTCRLESLKNLQLLR--KCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR 565
                  +       + ++  L  L+     I  L  L+N+S    +  L++    N + 
Sbjct: 207 YVNQITDITP-----VANMTRLNSLKIGNNKITDLSPLANLSQ---LTWLEIGT--NQIS 256

Query: 566 LGLQFGGDIEGRRKNEKDKQL---------LEALQPPLNVEELEIESYR-GNIFPKWLTS 615
                  DI   +   K K L         +  L     +  L + + + GN   + +  
Sbjct: 257 -------DINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGG 309

Query: 616 LTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
           LTNL  L LS   +   + PL  L  ++     N
Sbjct: 310 LTNLTTLFLSQN-HITDIRPLASLSKMDSADFAN 342

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 43/267 (16%), Positives = 99/267 (37%), Gaps = 39/267 (14%)

Query: 397 NRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
              + +        +  L      +  I   +  L +L+YLNL+  +I  I   L  L  
Sbjct: 32  ASVTDVVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVK 89

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGG 514
           L  L I   + +  + A ++ L N+R L  +   +       IS L +L  +    +G  
Sbjct: 90  LTNLYIGTNK-ITDISA-LQNLTNLRELYLNEDNI-----SDISPLANLTKMYSLNLGAN 142

Query: 515 VDGGGTCRLESLKNLQLLR--KCSIEGLKGLSNVSHVDEVE----RLQ----LYNKKNLL 564
            +      L ++  L  L   +  ++ +  ++N++ +  +     +++    L +  +L 
Sbjct: 143 HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLH 202

Query: 565 RLGLQFGGDIEGRRKNE-KDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLREL 622
                          N+  D   +  +     +  L+I + +  ++ P  L +L+ L  L
Sbjct: 203 YFTA---------YVNQITDITPVANMT---RLNSLKIGNNKITDLSP--LANLSQLTWL 248

Query: 623 KLSLCVNCEHLPPLGKLP-LEKLQLKN 648
           ++        +  +  L  L+ L + +
Sbjct: 249 EIGTN-QISDINAVKDLTKLKMLNVGS 274

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 56.9 bits (138), Expect = 5e-09
 Identities = 27/123 (21%), Positives = 47/123 (38%), Gaps = 17/123 (13%)

Query: 396 FNRFSILSELFSKLVFLRAL---RNWIREIPENV--GKLIHLKYLNLSELRIERIPETLC 450
           FN    +S  F  L  L  L    + ++++ E      L +L YL++S          + 
Sbjct: 87  FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 451 E-LYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGISR-LTSL 503
             L +L+ L + G  +       I  +L N+  L      L    L+ +       L+SL
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL-----DLSQCQLEQLSPTAFNSLSSL 201

Query: 504 RTL 506
           + L
Sbjct: 202 QVL 204

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 28/121 (23%), Positives = 42/121 (34%), Gaps = 10/121 (8%)

Query: 395 RFNRFSIL-SELFSKLVFLRAL---RNWIREIPENVG---KLIHLKYLNLSELRIERIPE 447
             N+   L   +F KL  L  L    N +               LKYL+LS   +  +  
Sbjct: 36  ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 95

Query: 448 TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRT 505
               L  L+ LD +     +     +   L N+  L    T   +    GI + L+SL  
Sbjct: 96  NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEV 154

Query: 506 L 506
           L
Sbjct: 155 L 155

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 8/113 (7%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYN 454
           +I    F+ L  L  L    N +  IP      L  LK L L    IE IP      + +
Sbjct: 102 TIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPS 161

Query: 455 LQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L++LD+   + L  +  G    L N+R L       L+ +P  ++ L  L  L
Sbjct: 162 LRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIP-NLTPLIKLDEL 212

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 55/264 (20%), Positives = 91/264 (34%), Gaps = 71/264 (26%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQK 457
            +   + +    L    N I+ I  N    L HL+ L LS   I  I       L NL  
Sbjct: 57  EVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNT 116

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLEKFVV 511
           L++   + L  +P G    L  ++ L     +L    ++ +P    +R+ SLR L+    
Sbjct: 117 LELFDNR-LTTIPNGAFVYLSKLKEL-----WLRNNPIESIPSYAFNRIPSLRRLD---- 166

Query: 512 GGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG 571
                      L  LK L  + + + EGL  L           L L      LR      
Sbjct: 167 -----------LGELKRLSYISEGAFEGLSNL---------RYLNLAM--CNLR------ 198

Query: 572 GDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN----IFPKWLTSLTNLRELKLSLC 627
                          +  L P + ++EL++    GN    I P     L +L++L +   
Sbjct: 199 --------------EIPNLTPLIKLDELDL---SGNHLSAIRPGSFQGLMHLQKLWMIQS 241

Query: 628 VNCEHLPP--LGKLP-LEKLQLKN 648
              + +       L  L ++ L +
Sbjct: 242 -QIQVIERNAFDNLQSLVEINLAH 264

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.0 bits (117), Expect = 3e-06
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 393 IHRFNRFSILSE-LFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPE- 447
           +    R S +SE  F  L  LR L      +REIP  +  LI L  L+LS   +  I   
Sbjct: 167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPG 225

Query: 448 TLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLR 504
           +   L +LQKL +   Q ++ +       L ++  + L      L  +P  + + L  L 
Sbjct: 226 SFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN--NLTLLPHDLFTPLHHLE 282

Query: 505 TL 506
            +
Sbjct: 283 RI 284

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 18/120 (15%), Positives = 39/120 (32%), Gaps = 17/120 (14%)

Query: 397 NRFSILSEL-FSKLVFLRAL---RNWIREIPEN--VGKLIHLKYLNLSELRIERIPETLC 450
           N+ ++L +L       ++ L    N I  +           L++LNL    I  +   + 
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL----LKYMPIGISRLTSLRTL 506
               L+ LD+   + L  +    +    +  +      L    L  +   +    +L   
Sbjct: 190 -FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI-----SLRNNKLVLIEKALRFSQNLEHF 242

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 16/117 (13%), Positives = 39/117 (33%), Gaps = 8/117 (6%)

Query: 402 LSELFSKLVFLRALR------NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNL 455
           + ++    V    L+      N +  +         + +++L   ++  I + L    NL
Sbjct: 181 IYDV-KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239

Query: 456 QKLDIRGCQYLRG-LPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVV 511
           +  D+RG  +  G L     K   ++++       L         + +L     +  
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC 296

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 15/120 (12%), Positives = 37/120 (30%), Gaps = 23/120 (19%)

Query: 397 NRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY 453
           N      +    L  LR L    N+++E+         ++ L+ +   I R+  +     
Sbjct: 68  NVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSCSR--GQ 120

Query: 454 NLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYL----LKYMPIG--ISRLTSLRTL 506
             + + +   + +  L          ++ L      L    +  +      +   +L  L
Sbjct: 121 GKKNIYLANNK-ITMLRDLDEGCRSRVQYL-----DLKLNEIDTVNFAELAASSDTLEHL 174

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.2 bits (136), Expect = 2e-08
 Identities = 47/270 (17%), Positives = 83/270 (30%), Gaps = 40/270 (14%)

Query: 397 NRFSILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERI-PETLCELYN 454
           N + I   L      L    N +R +          L+ L+LS   I+ I       L +
Sbjct: 18  NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 455 LQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE----KF 509
           L  L + G   ++ L  G    L +++ L+   T L       I  L +L+ L       
Sbjct: 78  LSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 510 VVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKG--LSNVSHVDEVERLQLYNKKNLLRLG 567
                        L +L++L  L    I+ +    L  +          +      L L 
Sbjct: 137 Q--SFKLPEYFSNLTNLEHLD-LSSNKIQSIYCTDLRVLHQ--------MPLLNLSLDLS 185

Query: 568 LQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR--GNIFPKWLTSLTNLRELKLS 625
           L     I+             A +  + + +L + +     N+    +  L  L   +L 
Sbjct: 186 LNPMNFIQ-----------PGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLV 233

Query: 626 L-----CVNCEHLPPLGKLPLEKLQLKNLK 650
           L       N E         L  L ++  +
Sbjct: 234 LGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.0 bits (107), Expect = 7e-05
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 14/166 (8%)

Query: 355 ECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSEL-------FS 407
               L     +     S+    +HL L   +   FP    +  +    +           
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEV 344

Query: 408 KLVFLRAL---RNWIR---EIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIR 461
            L  L  L   RN +       ++      LKYL+LS   +  +      L  L+ LD +
Sbjct: 345 DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 404

Query: 462 GCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
                +     +   L N+  L    T+         + L+SL  L
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 39/275 (14%), Positives = 82/275 (29%), Gaps = 43/275 (15%)

Query: 399 FSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSE--LRIERIPETLCELYNLQ 456
             +L ++    + L    N +  I     K I L  L L      +  +   +  L  L+
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 457 KLDIRGCQYL------RGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV 510
              +   ++       +   + +  L N+        YL  Y+   I     L  +  F 
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 511 VGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQF 570
           +           +E +K+         + L+ L N     +   L+L + K L     + 
Sbjct: 289 LVS-------VTIERVKDFSYNF--GWQHLE-LVNCKF-GQFPTLKLKSLKRLTFTSNKG 337

Query: 571 GGDIEGRRKNEKDKQLLEALQPPLNVEELEIES---YRGNIFPKWLTSLTNLRELKLSLC 627
           G                 +     ++E L++            +     T+L+ L LS  
Sbjct: 338 GNAF--------------SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 628 VNCEHLPPLGKLPLEKLQLKNLKSVKRVGNEFLGI 662
                   +  +    L L+ L+ +    +    +
Sbjct: 384 -------GVITMSSNFLGLEQLEHLDFQHSNLKQM 411

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 53/282 (18%), Positives = 91/282 (32%), Gaps = 48/282 (17%)

Query: 399 FSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYN 454
           F+I S  F     L+ L      + E+P  +  L  LK L LS  + E + + +     +
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326

Query: 455 LQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYL----LKYMPIGISRLTSLRTLEKF 509
           L  L I+G      L  G +  L N+R L      L    ++       +L +L  L+  
Sbjct: 327 LTHLSIKGNTKRLELGTGCLENLENLREL-----DLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 510 VVGG----GVDGGGTCRLESLKNLQL----LRKCSIEG-LKGLSNVSHVD-------EVE 553
            +       +          L+ L L    L+    +   + L  +  ++          
Sbjct: 382 NLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS 441

Query: 554 RLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN----IF 609
                    L  L      +++G    + + Q   +LQ    +E L +          I 
Sbjct: 442 EQLFDGLPALQHL------NLQGNHFPKGNIQKTNSLQTLGRLEILVL---SFCDLSSID 492

Query: 610 PKWLTSLTNLRELKLSLCVNC-EHLPP--LGKLPLEKLQLKN 648
               TSL  +  + LS   N         L  L    L L +
Sbjct: 493 QHAFTSLKMMNHVDLSH--NRLTSSSIEALSHLKGIYLNLAS 532

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 54.3 bits (131), Expect = 1e-07
 Identities = 21/120 (17%), Positives = 39/120 (32%), Gaps = 8/120 (6%)

Query: 392 SIHRFNRFSILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPETLC 450
                +           +  +   +++   I  N       L+ L+L+   +  +P  L 
Sbjct: 239 DDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL----LNDGTYLLKYMPIGISRLTSLRTL 506
            L  L+KL +   +    L        N  SL    +   T  L+     +  L +LR L
Sbjct: 299 GLSTLKKLVLSANK-FENLCQIS--ASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 52.7 bits (127), Expect = 3e-07
 Identities = 57/291 (19%), Positives = 98/291 (33%), Gaps = 48/291 (16%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERI-PETLCELYNLQK 457
            I   L +    L    N +  I      +LI+L +L+L+  +I  I  +T    + L  
Sbjct: 26  EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDT 85

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG--- 513
           L +     L  +          ++ L    T +     I +    +L +L    +G    
Sbjct: 86  LVLTANP-LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLY---LGSNHI 141

Query: 514 -GVDGGGTCRLESLKNLQL-------LRKCSIEGLKGLSNVS----------------HV 549
             +        E LK L         L K  +  L+  +N+S                  
Sbjct: 142 SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDS 201

Query: 550 DEVERLQLYNKKNLLRL--GLQF-------GGDIEGRRKNEKDKQLLEALQPPLNVEELE 600
              + L     +NLL +  GL+         G  E     +    + E L   ++VE + 
Sbjct: 202 AVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGL-CEMSVESIN 260

Query: 601 IESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLKN 648
           ++ +   NI        + L+EL L+   +   LP  L  L  L+KL L  
Sbjct: 261 LQKHYFFNISSNTFHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSA 310

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 44/281 (15%), Positives = 75/281 (26%), Gaps = 45/281 (16%)

Query: 397 NRFS-ILSELFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLC 450
           N    +     S    L+ L      I  I          L+ L L    I  I      
Sbjct: 91  NPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGF 150

Query: 451 ELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSL-LNDGTYLLKYMPIGISRLTSLRTL-- 506
               L+ LD +    +  L    +  L    +L LN     +  +  G       ++L  
Sbjct: 151 PTEKLKVLDFQNNA-IHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 507 -EKFVVGGGVDGGGTCRLESLKNLQL-------LRKCSIEGLKGLSNVS------HVDEV 552
                +     G     ++SL            +     EGL  +S  S      +   +
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNI 269

Query: 553 ERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN----I 608
                +    L  L L                +L   L     +++L +     N    +
Sbjct: 270 SSNTFHCFSGLQELDLTA---------T-HLSELPSGLVGLSTLKKLVL---SANKFENL 316

Query: 609 FPKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQL 646
                ++  +L  L +        L    L  L  L +L L
Sbjct: 317 CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 3e-05
 Identities = 52/260 (20%), Positives = 82/260 (31%), Gaps = 53/260 (20%)

Query: 398 RFSILSELFSKLVFLRAL---RNWIREIPENVG---KLIHLKYLNLSELRIERI-PETLC 450
           R  + +     L  LR L    + I            L HL+ LNLS      +  E   
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 451 ELYNLQKLDIRGCQYLRGLPAG--IRKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRTLE 507
           E   L+ LD+   + L+   A    + L  ++ L    + L       +   L +L+ L 
Sbjct: 398 ECPQLELLDLAFTR-LKVKDAQSPFQNLHLLKVLNLSHSLL-DISSEQLFDGLPALQHLN 455

Query: 508 ----KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGL-----KGLSNVSHVDEVERLQLY 558
                F  G          L  L+ L +L  C +  +       L  ++HVD      L 
Sbjct: 456 LQGNHFPKGNIQKTNSLQTLGRLEIL-VLSFCDLSSIDQHAFTSLKMMNHVD------LS 508

Query: 559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTN 618
           +  N L                      L+ +   LN+    I      I P  L  L+ 
Sbjct: 509 H--NRLT-SSSIE-----------ALSHLKGIY--LNLASNHISI----ILPSLLPILSQ 548

Query: 619 LRELKLS----LCVNCEHLP 634
            R + L      C  C ++ 
Sbjct: 549 QRTINLRQNPLDC-TCSNIY 567

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.4 bits (108), Expect = 6e-05
 Identities = 42/250 (16%), Positives = 76/250 (30%), Gaps = 58/250 (23%)

Query: 417 NWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRK 475
             + EIP  +      + L  S   +  I   T   L NL  LD+  CQ +  +      
Sbjct: 22  LGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQ-IYWIHEDT-- 76

Query: 476 LMNMRSLLNDGTYLLKYMPIGISRLT--SLRTLEKFVVGGGVDGGGTCRLESLKNLQLLR 533
             +   L      L          LT   L  + +              L   K L+ L 
Sbjct: 77  FQSQHRL----DTL---------VLTANPLIFMAETA------------LSGPKALKHLF 111

Query: 534 KCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP 593
                        + +  ++ + L+N+K L  L L           N      L    P 
Sbjct: 112 ---------FIQ-TGISSIDFIPLHNQKTLESLYLGS---------NHISSIKLPKGFPT 152

Query: 594 LNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLPLEKLQLKNLKSV 652
             ++ L+ ++     +  + ++SL     L L+L  N      +  +          +S+
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-----DIAGIEPGAFDSAVFQSL 207

Query: 653 KRVGNEFLGI 662
              G + L +
Sbjct: 208 NFGGTQNLLV 217

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 18/125 (14%)

Query: 396 FNRFSIL-SELFSKLVFLRAL---RNWIREIPENV--GKLIHLKYLNLSELRIERIP-ET 448
           +N    L +E F +   L  L      ++          L  LK LNLS   ++    + 
Sbjct: 385 YNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL 444

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL------LKYMPIGI-SRLT 501
              L  LQ L+++G  + +G       L  +  L      L      L  +     + L 
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL----EILVLSFCDLSSIDQHAFTSLK 500

Query: 502 SLRTL 506
            +  +
Sbjct: 501 MMNHV 505

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 53.8 bits (130), Expect = 5e-08
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 24/149 (16%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE--TLCELY 453
           S+    FS L  L+ L      +  +     G L  LK LN++   I+          L 
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 454 NLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGISRLTSLRTLE- 507
           NL+ LD+   + ++ +     R L  M  LLN    L    + ++  G  +   L+ L  
Sbjct: 150 NLEHLDLSSNK-IQSIYCTDLRVLHQMP-LLNLSLDLSLNPMNFIQPGAFKEIRLKELAL 207

Query: 508 -----KFVVGGGVDGGGTCRLESLKNLQL 531
                K V  G  D     RL SL+ + L
Sbjct: 208 DTNQLKSVPDGIFD-----RLTSLQKIWL 231

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 54.4 bits (131), Expect = 7e-08
 Identities = 28/121 (23%), Positives = 48/121 (39%), Gaps = 13/121 (10%)

Query: 395 RFNRFSILSE-LFSKLVFLRALR----NWIREIPENV-GKLIHLKYLNLSELRIERIPET 448
           R N    +    F+++  L  L       +  I E     L +LKYLNL    I+ +P  
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-N 213

Query: 449 LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSL-LNDGTYLLKYMPIG-ISRLTSLRT 505
           L  L  L++L++ G      +  G    L +++ L + +    +  +       L SL  
Sbjct: 214 LTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS--QVSLIERNAFDGLASLVE 270

Query: 506 L 506
           L
Sbjct: 271 L 271

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 10/114 (8%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYN 454
            I    F+ L  L  L    NW+  IP      L  L+ L L    IE IP      + +
Sbjct: 113 QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPS 172

Query: 455 LQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGISRLTSLRTL 506
           L +LD+   + L  +  G    L N++ L L      +K MP  ++ L  L  L
Sbjct: 173 LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC--NIKDMP-NLTPLVGLEEL 223

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 71/264 (26%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQK 457
            +   + S   +L  + N I+ I  +    L HL+ L L    I +I       L +L  
Sbjct: 68  EVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNT 127

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLEKFVV 511
           L++     L  +P+G    L  +R L     +L    ++ +P    +R+ SL  L+    
Sbjct: 128 LELFDNW-LTVIPSGAFEYLSKLREL-----WLRNNPIESIPSYAFNRVPSLMRLD---- 177

Query: 512 GGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG 571
                      L  LK L+ + + + EGL  L         + L L      ++      
Sbjct: 178 -----------LGELKKLEYISEGAFEGLFNL---------KYLNLGM--CNIK------ 209

Query: 572 GDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN----IFPKWLTSLTNLRELKLSLC 627
                          +  L P + +EELE+    GN    I P     L++L++L +   
Sbjct: 210 --------------DMPNLTPLVGLEELEM---SGNHFPEIRPGSFHGLSSLKKLWVMNS 252

Query: 628 VNCEHLPP--LGKLP-LEKLQLKN 648
                +       L  L +L L +
Sbjct: 253 -QVSLIERNAFDGLASLVELNLAH 275

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 19/113 (16%), Positives = 35/113 (30%), Gaps = 21/113 (18%)

Query: 358 WLQINGTKESVINSFGD--NVRHLGLNFQRGASFPMSIHRFNRFSILSE-LFSKLVFLRA 414
           +L +       + +      +  L ++              N F  +    F  L  L+ 
Sbjct: 200 YLNLGMCNIKDMPNLTPLVGLEELEMSG-------------NHFPEIRPGSFHGLSSLKK 246

Query: 415 L---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRG 462
           L    + +  I  N    L  L  LNL+   +  +P      L  L +L +  
Sbjct: 247 LWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.3 bits (131), Expect = 7e-08
 Identities = 52/247 (21%), Positives = 81/247 (32%), Gaps = 46/247 (18%)

Query: 395 RFNRFSILSE-LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIP-ET 448
             NR   L++  F+    L  L    N +  +       L +L+ L L   R++ IP   
Sbjct: 40  GKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGV 99

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLRT 505
              L NL KLDI   + +  L   + + L N++SL + D    L Y+     S L SL  
Sbjct: 100 FTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDN--DLVYISHRAFSGLNSLEQ 156

Query: 506 LE------KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYN 559
           L         +            L  L  L +LR         L +  +++ +       
Sbjct: 157 LTLEKCNLTSIPTEA--------LSHLHGLIVLR---------LRH-LNINAIRDYSFKR 198

Query: 560 KKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTN 618
              L  L +                 +       LN+  L I       +    +  L  
Sbjct: 199 LYRLKVLEISH---------WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249

Query: 619 LRELKLS 625
           LR L LS
Sbjct: 250 LRFLNLS 256

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 57/235 (24%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLCELYN 454
            +L  +F  L  L++L    N +  I       L  L+ L L +  +  IP E L  L+ 
Sbjct: 118 ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 455 LQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG 513
           L  L +R    +  +     ++L  ++ L       L  M        +L +L       
Sbjct: 178 LIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSL------- 229

Query: 514 GVDGGGTCRLESLKNLQL--LRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG 571
                      S+ +  L  +   ++  L  L           L L    N +       
Sbjct: 230 -----------SITHCNLTAVPYLAVRHLVYL---------RFLNLSY--NPIS------ 261

Query: 572 GDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLS 625
             IEG             L   L ++E+++   +   + P     L  LR L +S
Sbjct: 262 -TIEGS-----------MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVS 304

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 8e-06
 Identities = 21/121 (17%), Positives = 47/121 (38%), Gaps = 12/121 (9%)

Query: 395 RFNRFS-ILSELFSKLVFLRALR----NWIREIPENVGKLIHLKYLNLSELRIERIPE-T 448
           R    + I    F +L  L+ L      ++  +  N    ++L  L+++   +  +P   
Sbjct: 184 RHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA 243

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLRT 505
           +  L  L+ L++     +  +   +  +L+ ++ + L  G   L  +       L  LR 
Sbjct: 244 VRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG--QLAVVEPYAFRGLNYLRV 300

Query: 506 L 506
           L
Sbjct: 301 L 301

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.1 bits (107), Expect = 6e-05
 Identities = 47/261 (18%), Positives = 92/261 (35%), Gaps = 64/261 (24%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQK 457
           ++   + ++   L   +N I+ + ++      HL+ L L+E  +  +       L+NL+ 
Sbjct: 25  AVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRT 84

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGV 515
           L +R  + L+ +P G+   L N+  L +++                 +  L  ++     
Sbjct: 85  LGLRSNR-LKLIPLGVFTGLSNLTKLDISE---------------NKIVILLDYMFQD-- 126

Query: 516 DGGGTCRLESLKNLQL----LRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL--GLQ 569
                  L +LK+L++    L   S     GL+++      E+L L      L       
Sbjct: 127 -------LYNLKSLEVGDNDLVYISHRAFSGLNSL------EQLTLEK--CNLTSIPTEA 171

Query: 570 FGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN 629
                            L  L   L +  L I +    I       L  L+ L++S    
Sbjct: 172 LSH--------------LHGLIV-LRLRHLNINA----IRDYSFKRLYRLKVLEISHWPY 212

Query: 630 CEHLPP--LGKLPLEKLQLKN 648
            + + P  L  L L  L + +
Sbjct: 213 LDTMTPNCLYGLNLTSLSITH 233

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.0 bits (99), Expect = 6e-04
 Identities = 13/72 (18%), Positives = 33/72 (45%), Gaps = 6/72 (8%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE 451
           N  S +   +  +L+ L+ ++     +  +       L +L+ LN+S  ++  + E++  
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 452 -LYNLQKLDIRG 462
            + NL+ L +  
Sbjct: 318 SVGNLETLILDS 329

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 1e-07
 Identities = 30/242 (12%), Positives = 67/242 (27%), Gaps = 40/242 (16%)

Query: 397 NRFSILSEL-FSKLVFLRAL---RNWIREIPEN--VGKLIHLKYLNLSELRIERIPETLC 450
           N+ ++L +L       ++ L    N I  +           L++LNL    I  +   + 
Sbjct: 130 NKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV 189

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL----LKYMPIGISRLTSLRTL 506
               L+ LD+   + L  +    +    +  +      L    L  +   +    +L   
Sbjct: 190 -FAKLKTLDLSSNK-LAFMGPEFQSAAGVTWI-----SLRNNKLVLIEKALRFSQNLEHF 242

Query: 507 EKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL 566
                              L+          +       V  V + + ++    +N    
Sbjct: 243 ------------------DLRGNGFHCGTLRDFFSKNQRVQTVAK-QTVKKLTGQNEEEC 283

Query: 567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF---PKWLTSLTNLRELK 623
            +   G        +      + L   L  +E  + S +G+          +    RE+ 
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLI-ALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 624 LS 625
             
Sbjct: 343 AL 344

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.8 bits (119), Expect = 2e-06
 Identities = 33/267 (12%), Positives = 79/267 (29%), Gaps = 26/267 (9%)

Query: 406 FSKLVFLRALR------NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLD 459
               V    L+      N +  +         + +++L   ++  I + L    NL+  D
Sbjct: 184 VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFD 243

Query: 460 IRGCQYLRG-LPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGG 518
           +RG  +  G L     K   ++++       L         + +L     +         
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCC------- 296

Query: 519 GTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGR- 577
                     L  L++     L G  + +   E ER     ++ +  L  Q+   I+   
Sbjct: 297 EDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRTVIDQVT 356

Query: 578 -----------RKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSL 626
                      +K   D+Q+    +    ++    ++             + L+ L+  +
Sbjct: 357 LRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIV 416

Query: 627 CVNCEHLPPLGKLPLEKLQLKNLKSVK 653
               E       +    ++  ++   K
Sbjct: 417 KRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 53.9 bits (130), Expect = 1e-07
 Identities = 53/309 (17%), Positives = 95/309 (30%), Gaps = 52/309 (16%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERI-PETLCELYNLQK 457
            +  +L + +  L    N +R +P     +   L  L++    I ++ PE   +L  L+ 
Sbjct: 18  QVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKV 77

Query: 458 LDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG--- 513
           L+++  + L  L         N+  L      + K       +  +L TL    +     
Sbjct: 78  LNLQHNE-LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITL---DLSHNGL 133

Query: 514 -GVDGGGTCRLESLKNLQLLRKCSIEGL-KGLSNVSHVDEVERLQL-YNK---------- 560
                G   +LE+L+ L  L    I+ L     ++     +++L+L  N+          
Sbjct: 134 SSTKLGTQVQLENLQELL-LSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 561 --KNLLRLGL---QFGGDI-EGRRKNEKDKQL---------LEALQP----PLNVEELEI 601
               L  L L   Q G  + E       +  +         L          L    L +
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 602 ESYRGN----IFPKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQL-KNLKSVK 653
                N    +       L  L    L    N +HL    L  L  +  L L ++     
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYN-NIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 654 RVGNEFLGI 662
                   I
Sbjct: 312 ISLASLPKI 320

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 4e-06
 Identities = 46/283 (16%), Positives = 89/283 (31%), Gaps = 56/283 (19%)

Query: 407 SKLVFLRALRNWIREIPENVG---KLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRG 462
           + +  L    + +           K  +L  L+LS   +  +  ++   L  L+   +  
Sbjct: 222 TSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEY 281

Query: 463 CQYLRGLPAG-IRKLMNMRSL-LNDGTYLLKYMPIGISRLTS-----LRTLEKFVVGG-- 513
              ++ L +  +  L N+R L L             + ++       L+ LE   +    
Sbjct: 282 NN-IQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND 340

Query: 514 --GVDGGGTCRLESLKNLQL------LRKCSIEGLKGLSNVS---------HVDEVERLQ 556
             G+       L +LK L L      LR  + E    L++            + ++E   
Sbjct: 341 IPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDA 400

Query: 557 LYNKKNLLRLGL---QFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN----IF 609
                +L  L L   + G ++ G           +  +   N+ E+ +     N    + 
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTG-----------QEWRGLENIFEIYL---SYNKYLQLT 446

Query: 610 PKWLTSLTNLRELKLS---LCVNCEHLPPLGKLP-LEKLQLKN 648
                 + +L+ L L    L        P   L  L  L L N
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 13/122 (10%)

Query: 395 RFNRFSILSE--LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPET 448
             N F++L    +F KL  LR +    N I +I E        +  + L+  R+E +   
Sbjct: 40  NNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK 99

Query: 449 LCE-LYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLR 504
           + + L +L+ L +R  + +  +       L ++R L L D    +  +  G    L SL 
Sbjct: 100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDN--QITTVAPGAFDTLHSLS 156

Query: 505 TL 506
           TL
Sbjct: 157 TL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 28/136 (20%), Positives = 48/136 (35%), Gaps = 26/136 (19%)

Query: 412 LRALRNWIREIPENVG--KLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRG 468
           LR   N    +       KL  L+ +N S  +I  I E        + ++ +   + L  
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LEN 95

Query: 469 LPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLE------KFVVGGGVD 516
           +   + + L ++++L      L    +  +       L+S+R L         V  G  D
Sbjct: 96  VQHKMFKGLESLKTL-----MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD 150

Query: 517 GGGTCRLESLKNLQLL 532
                 L SL  L LL
Sbjct: 151 -----TLHSLSTLNLL 161

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 42/254 (16%), Positives = 79/254 (31%), Gaps = 37/254 (14%)

Query: 416 RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGI- 473
            + + EIP ++    +   L     ++  I +       +L+K++I     L  + A + 
Sbjct: 18  ESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF 75

Query: 474 RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRTLE----KFVVGGGVDGGGTCRLESLKN 528
             L  +  +  +    L Y+       L +L+ L            +             
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH---LPDVHKIHSLQKVL 132

Query: 529 LQLLRKCSIEGL-----KGLSNVSHVDEVERLQLY-------NKKNLLRLGLQFGGDIEG 576
           L +    +I  +      GLS  S +  + +  +        N   L  L L    ++E 
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192

Query: 577 RRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPP 635
              +                  L+I   R  ++    L +L  LR        N + LP 
Sbjct: 193 LPND--------VFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKKLPT 241

Query: 636 LGKLP-LEKLQLKN 648
           L KL  L +  L  
Sbjct: 242 LEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 20/114 (17%), Positives = 32/114 (28%), Gaps = 7/114 (6%)

Query: 400 SILSELFSKLVFLRALR----NWIREIPENV--GKLIHLKYLNLSELRIERIPETLCELY 453
            +        +    L       I  I  N   G       L L++  I+ I  +     
Sbjct: 118 HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGT 177

Query: 454 NLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
            L +L++     L  LP  +         L    T +      G+  L  LR  
Sbjct: 178 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRAR 231

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 52.3 bits (126), Expect = 3e-07
 Identities = 56/275 (20%), Positives = 96/275 (34%), Gaps = 57/275 (20%)

Query: 397 NRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
              +         ++  L+A R  I+ I + V  L +L  +N S  ++  I   L  L  
Sbjct: 34  TNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTK 91

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG- 513
           L  + +   Q +  +   +  L N+  L      +       I  L +L  L +  +   
Sbjct: 92  LVDILMNNNQ-IADITP-LANLTNLTGLTLFNNQI-----TDIDPLKNLTNLNRLELSSN 144

Query: 514 ---GVDGGGTCRLESLKNLQLL----RKCSIEGLKGLSN----------VSHVDEVERLQ 556
               +       L  L +LQ L    +   ++ L  L+           VS +  + +L 
Sbjct: 145 TISDISA-----LSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL- 198

Query: 557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQL--LEALQPPLNVEELEIESYRGNIFPKWLT 614
                NL  L             N    Q+  +  L    N++EL +   +       L 
Sbjct: 199 ----TNLESLIAT---------NN----QISDITPLGILTNLDELSLNGNQLKDIGT-LA 240

Query: 615 SLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
           SLTNL +L L+      +L PL  L  L +L+L  
Sbjct: 241 SLTNLTDLDLANN-QISNLAPLSGLTKLTELKLGA 274

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.2 bits (118), Expect = 3e-06
 Identities = 36/244 (14%), Positives = 87/244 (35%), Gaps = 38/244 (15%)

Query: 397 NRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
           N+ S ++ L   + L  L    N +++I   +  L +L  L+L+  +I  +   L  L  
Sbjct: 209 NQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTK 266

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGG 514
           L +L +   Q +  +   +  L  + +L  +   L       IS L +L  L        
Sbjct: 267 LTELKLGANQ-ISNIS-PLAGLTALTNLELNENQLED--ISPISNLKNLTYLT------- 315

Query: 515 VDGGGTCRLESLKNLQLLRKCSIEG--LKGLSNVSHVDEVERLQL-YNK----------K 561
           +       +  + +L  L++       +  +S+++++  +  L   +N+           
Sbjct: 316 LYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLT 375

Query: 562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRE 621
            + +LGL           ++         +  +++           I P  ++   +  E
Sbjct: 376 RITQLGLN----------DQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTE 425

Query: 622 LKLS 625
             ++
Sbjct: 426 PDIT 429

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 31/120 (25%), Positives = 47/120 (39%), Gaps = 17/120 (14%)

Query: 397 NRFSILSE-LFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452
           N     S         L  L   R  + ++  + G L  L  L+LS  +++ +P     L
Sbjct: 41  NLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTL 99

Query: 453 YNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTL 506
             L  LD+   + L  LP G  R L  ++ L     YL    LK +P G+ +    L  L
Sbjct: 100 PALTVLDVSFNR-LTSLPLGALRGLGELQEL-----YLKGNELKTLPPGLLTPTPKLEKL 153

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 397 NRFSILSE-LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE 451
           N    L   L +    L  L    N + E+P  +   L +L  L L E  +  IP+    
Sbjct: 134 NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 452 LYNLQKLDIRG 462
            + L    + G
Sbjct: 194 SHLLPFAFLHG 204

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 50/272 (18%), Positives = 93/272 (34%), Gaps = 37/272 (13%)

Query: 399 FSILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLCELY 453
           FS+ S +F  L  L+ L    N I +I +     L +L+ LNLS   +  +       L 
Sbjct: 279 FSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP 338

Query: 454 NLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LND-------GTYLLKYMPIGISRLTSLR 504
            +  +D++    +  +     + L  +++L L D           +  + +  ++L +L 
Sbjct: 339 KVAYIDLQKNH-IAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397

Query: 505 TLE------KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQ-L 557
            +               +      L  + +LQ+L   +       S      E   L+ L
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILI-LNQNRFSSCSGDQTPSENPSLEQL 456

Query: 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLT 617
           +  +N+L+                   + L  LQ  L +    + S    +F    + LT
Sbjct: 457 FLGENMLQ-------LAWETELCWDVFEGLSHLQV-LYLNHNYLNSLPPGVF----SHLT 504

Query: 618 NLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
            LR L L+       L        LE L +  
Sbjct: 505 ALRGLSLNSN-RLTVLSHNDLPANLEILDISR 535

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452
           N    +    F K+  L  L    N +  +      +  LK L+LS   +  +     + 
Sbjct: 258 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 317

Query: 453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482
             L+ L +     +  L         +++L
Sbjct: 318 DRLENLYLDHNS-IVTLKLST--HHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 4e-06
 Identities = 24/117 (20%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 396 FNRFSILSEL-FSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLCEL 452
            + +    ++  +    +    + +R++P  +      ++ LNL++L+IE I        
Sbjct: 33  QDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYA 92

Query: 453 YNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLRTL 506
           + +QKL +     +R LP  + + +  +  L L      L  +P GI      L TL
Sbjct: 93  HTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTL 146

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 43/248 (17%), Positives = 74/248 (29%), Gaps = 39/248 (15%)

Query: 395 RFNRFSILSE-LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIP-ET 448
            FN    L   +F  +  L  L   RN +  +P  +      L  L++S   +ERI  +T
Sbjct: 101 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 160

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508
                +LQ L +   + L  +   +  + ++                 +S L     +E+
Sbjct: 161 FQATTSLQNLQLSSNR-LTHVDLSL--IPSLFHANVSYNL--------LSTLAIPIAVEE 209

Query: 509 FVVGG----GVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVD-------EVERLQL 557
                     V G     L  L  LQ         L     +  VD       ++     
Sbjct: 210 LDASHNSINVVRGPVNVELTIL-KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 268

Query: 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLT 617
              + L RL +           N +   L    QP   ++ L++         +      
Sbjct: 269 VKMQRLERLYIS----------NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 318

Query: 618 NLRELKLS 625
            L  L L 
Sbjct: 319 RLENLYLD 326

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 6e-07
 Identities = 25/110 (22%), Positives = 42/110 (38%), Gaps = 4/110 (3%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE-LYNLQK 457
            I   L      L    N +R +          L+ L+LS   I+ I +   + L +L  
Sbjct: 21  KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLST 80

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L + G   ++ L  G    L +++ L+   T L       I  L +L+ L
Sbjct: 81  LILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 53/267 (19%), Positives = 91/267 (34%), Gaps = 37/267 (13%)

Query: 396 FNRFSILSE-LFSKLVFLRAL---RNWIREI--PENVGKLIHLKYLNLSELRIERIP-ET 448
               + L       L  L+ L    N I+    PE    L +L++L+LS  +I+ I    
Sbjct: 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 449 LCELYNLQ----KLDIRGCQYLRGLPAGIRKLMNMRSL-LNDGTYLLKYMPIGISRLTSL 503
           L  L+ +      LD+     +  +  G  K + +  L L +    L  M   I  L  L
Sbjct: 169 LRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGL 227

Query: 504 RTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQL-YNKKN 562
                 +              +  NL+   K ++EGL  L+       +E  +L Y    
Sbjct: 228 EVHRLVL----------GEFRNEGNLEKFDKSALEGLCNLT-------IEEFRLAYLDYY 270

Query: 563 LLRLGLQFGGDIEGRRKNEKDKQL--LEALQPPLNVEELEIESYRGNIFPKWLTSLTNLR 620
           L  +   F         +     +  ++        + LE+ + +   FP     L +L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTL--KLKSLK 328

Query: 621 ELKLSLCVNCEHLPPLGKLP-LEKLQL 646
            L  +      +      LP LE L L
Sbjct: 329 RLTFT-SNKGGNAFSEVDLPSLEFLDL 354

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 24/109 (22%), Positives = 38/109 (34%), Gaps = 9/109 (8%)

Query: 406 FSKLVFLRAL---RNWIREI---PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLD 459
              L  L  L   RN +       ++      LKYL+LS   +  +      L  L+ LD
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD 402

Query: 460 IRGCQYLRGLPAGI--RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
            +    L+ +        L N+  L    T+         + L+SL  L
Sbjct: 403 FQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.8 bits (101), Expect = 3e-04
 Identities = 47/288 (16%), Positives = 86/288 (29%), Gaps = 61/288 (21%)

Query: 358 WLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRN 417
            L I   + + ++ + D++  L       +SF +      R    S        L  +  
Sbjct: 256 NLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY-NFGWQHLELVNC 314

Query: 418 WIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLM 477
              + P    KL  LK L  +  +      +  +L +L+ LD+     L       +   
Sbjct: 315 KFGQFPTL--KLKSLKRLTFTSNKGGNAF-SEVDLPSLEFLDLSRNG-LSFKGCCSQSDF 370

Query: 478 NMRSLLNDGTYL------LKYMPIGISRLTSLRTLE------KFVVGGGVDGGGTCRLES 525
              SL     YL      +  M      L  L  L+      K +    V       L +
Sbjct: 371 GTTSL----KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS----LRN 422

Query: 526 LKNLQL----LRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNE 581
           L  L +     R        GLS++        L++    N  +                
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLSSLEV------LKMAG--NSFQENF------------- 461

Query: 582 KDKQLLEALQPPLNVEELEIESYRGN----IFPKWLTSLTNLRELKLS 625
               L +      N+  L++          + P    SL++L+ L ++
Sbjct: 462 ----LPDIFTELRNLTFLDL---SQCQLEQLSPTAFNSLSSLQVLNMA 502

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 395 RFNRF--SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE- 447
             N F  + L ++F++L  L  L   +  + ++       L  L+ LN++  +++ +P+ 
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG 512

Query: 448 TLCELYNLQKLDIRG 462
               L +LQK+ +  
Sbjct: 513 IFDRLTSLQKIWLHT 527

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 50.6 bits (122), Expect = 7e-07
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 4/94 (4%)

Query: 417 NWIREIPENVGKLIHLKYLNLSELRIE---RIPETLCELYNLQKLDIRGCQYLRG-LPAG 472
            W+  + +   +   +  L+LS L +     IP +L  L  L  L I G   L G +P  
Sbjct: 37  TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPA 96

Query: 473 IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           I KL  +  L    T +   +P  +S++ +L TL
Sbjct: 97  IAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 8/107 (7%)

Query: 406 FSKLVFLRAL----RNWIR-EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLD 459
            + L +L  L     N +   IP  + KL  L YL ++   +   IP+ L ++  L  LD
Sbjct: 72  LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131

Query: 460 IRGCQYLRG-LPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT 505
                 L G LP  I  L N+  +  DG  +   +P      + L T
Sbjct: 132 FSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT 177

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 51.8 bits (124), Expect = 7e-07
 Identities = 52/309 (16%), Positives = 100/309 (32%), Gaps = 35/309 (11%)

Query: 188 LKNGLHGSKIFVTTRNESVA-RMMGSTNIISI-KQLAEEECWSLFKQLAFFGRSFEDREK 245
           LK   +  +I +TTR++SV   +MG  +++ +   L  E+   +             +E 
Sbjct: 251 LKAFDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNM-----KKED 305

Query: 246 LEPMGRKIARKCKGLPLAAKVIGNLLR-SKSTVKEWQRILESEMWKVLEIGQGYLNAKED 304
           L      I ++CKG PL   +IG LLR   +    + R L+++ +K +     Y     D
Sbjct: 306 LPAEAHSIIKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALD 365

Query: 305 EEMEMIGEECFNIL--AARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECLWLQIN 362
           E M +       +L    + ++ +      D  +  K+  ++ D                
Sbjct: 366 EAMSI----SVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNK 421

Query: 363 GTKESVINSFGDNVRHLGL--NF--QRGASFPMSIHRFNRFSILSELFSKLVFL--RALR 416
                  N          L  +F  ++  S    +HR              +        
Sbjct: 422 SLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQLQDLHRKMVTQFQRYYQPHTLSPDQEDCM 481

Query: 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKL 476
            W             L Y   S    + +   +  L  ++         L G    I + 
Sbjct: 482 YWYN----------FLAYHMASANMHKELCALMFSLDWIKAK-----TELVGPAHLIHEF 526

Query: 477 MNMRSLLND 485
           +  R +L++
Sbjct: 527 VAYRHILDE 535

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 51/264 (19%), Positives = 88/264 (33%), Gaps = 50/264 (18%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPE--TL 449
           N  + + E  FS L  L  L    N++  +  +    L  L +LNL     + + E    
Sbjct: 86  NGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLF 145

Query: 450 CELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE- 507
             L  LQ L +        +       L  +  L  D + L  Y P  +  + ++  L  
Sbjct: 146 SHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL 205

Query: 508 -----KFVVGGGVDGGGTCRLESLKNLQLLR-KCSIEGLKGLSNVSHVDEVERLQLYNKK 561
                  ++   VD        S++ L+L            LS        E   L  K 
Sbjct: 206 HMKQHILLLEIFVDV-----TSSVECLELRDTDLDTFHFSELST------GETNSLIKKF 254

Query: 562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE-----IESYRGNIFPKWLTSL 616
               + +           +E   Q+++ L     + ELE     ++S    IF      L
Sbjct: 255 TFRNVKIT----------DESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIF----DRL 300

Query: 617 TNLRELKLS----LCVNCEHLPPL 636
           T+L+++ L      C +C  +  L
Sbjct: 301 TSLQKIWLHTNPWDC-SCPRIDYL 323

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 54/276 (19%), Positives = 99/276 (35%), Gaps = 51/276 (18%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQK 457
           SI S L   +  L    N I  I  +   + ++L+ L L+   I  I E +   L +L+ 
Sbjct: 45  SIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH 104

Query: 458 LDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRTLE-------K 508
           LD+     L  L +   + L ++  L   G          + S LT L+ L         
Sbjct: 105 LDLSYNY-LSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFT 163

Query: 509 FVVGGGVDGGGTCRLESLKNLQL----LRKCSIEGLKGLSNVSHVDEVERLQL-YNKKNL 563
            +      G     L  L+ L++    L+    + LK + NVSH      L L   +  L
Sbjct: 164 KIQRKDFAG-----LTFLEELEIDASDLQSYEPKSLKSIQNVSH------LILHMKQHIL 212

Query: 564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK----WLTSLTNL 619
           L                        +++  L + + +++++  +         L      
Sbjct: 213 LLEIF-VDV--------------TSSVE-CLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 620 RELKLSLCVNCEHLPPLGKLP-LEKLQLKN--LKSV 652
           R +K++     + +  L ++  L +L+     LKSV
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 28/118 (23%), Positives = 49/118 (41%), Gaps = 17/118 (14%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYN 454
           S+    F  L  L  L   R  ++E+   +   L  L+YL L +  ++ +P+ T  +L N
Sbjct: 95  SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGN 154

Query: 455 LQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTL 506
           L  L + G + +  +P    R L ++  L      L    + ++       L  L TL
Sbjct: 155 LTHLFLHGNR-ISSVPERAFRGLHSLDRL-----LLHQNRVAHVHPHAFRDLGRLMTL 206

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.8 bits (109), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 403 SELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDI 460
             + +    +    N I  +P        +L  L L    + RI       L  L++LD+
Sbjct: 28  VGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87

Query: 461 RGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTL 506
                LR +       L  + +L     +L    L+ +  G+   L +L+ L
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTL-----HLDRCGLQELGPGLFRGLAALQYL 134

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 397 NRFSILSE-LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLC 450
           NR S + E  F  L  L  L   +N +  +  +    L  L  L L    +  +P   L 
Sbjct: 163 NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALA 222

Query: 451 ELYNLQKLDIRG 462
            L  LQ L +  
Sbjct: 223 PLRALQYLRLND 234

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 2e-06
 Identities = 49/260 (18%), Positives = 88/260 (33%), Gaps = 54/260 (20%)

Query: 397 NRFS--ILSELF--SKLVFLRALRNWIR-EIPENVGKLIHLKYLNLSELRIE-RIPETLC 450
           N F+  I   L   S+LV L    N++   IP ++G L  L+ L L    +E  IP+ L 
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 451 ELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSL-LND----GTYLLKYMPIGISRLTSLR 504
            +  L+ L +     L G +P+G+    N+  + L++    G      +P  I RL +L 
Sbjct: 464 YVKTLETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGE-----IPKWIGRLENLA 517

Query: 505 TLE----KFVVGGGVDGGGTCRLESLKNLQLLR---------------KCSIEGLKGLSN 545
            L+     F       G     L   ++L  L                K S +       
Sbjct: 518 ILKLSNNSF------SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA 571

Query: 546 VSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR 605
                 ++   +  + +     L+F G    +      +              +    Y 
Sbjct: 572 GKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC----------NITSRVYG 621

Query: 606 GNIFPKWLTSLTNLRELKLS 625
           G+       +  ++  L +S
Sbjct: 622 GHT-SPTFDNNGSMMFLDMS 640

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.6 bits (101), Expect = 4e-04
 Identities = 55/327 (16%), Positives = 108/327 (33%), Gaps = 85/327 (25%)

Query: 375 NVRHLGLNFQRGASFPMSIHRF----------NRFS-ILSEL--FSKLVFLRALRNWIR- 420
           ++    LN     +   S+             +  +  +S     + L  L   RN +  
Sbjct: 56  DLSSKPLNVGFS-AVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSG 114

Query: 421 EIPENV--GKLIHLKYLNLSELRIE-RIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKL 476
            +      G    LK+LN+S   ++         +L +L+ LD+           G    
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 477 MNMRSLLNDGTYL-LKYM----PIGISRLTSLRTLE----KFVVGGGVDGGGT----CRL 523
                L     +L +        + +SR  +L  L+     F                  
Sbjct: 175 DGCGEL----KHLAISGNKISGDVDVSRCVNLEFLDVSSNNFS--------TGIPFLGDC 222

Query: 524 ESLKNLQLLRKCSIEGL--KGLSNVSHVDEVERLQL-YNK----------KNLLRLGL-- 568
            +L++L +     + G   + +S  + +   + L +  N+          K+L  L L  
Sbjct: 223 SALQHLDI-SGNKLSGDFSRAISTCTEL---KLLNISSNQFVGPIPPLPLKSLQYLSLAE 278

Query: 569 -QFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIES--YRGNIFPKWLTSLTNLRELKLS 625
            +F G+I           L  A      +  L++    + G + P +  S + L  L LS
Sbjct: 279 NKFTGEI--------PDFLSGACD---TLTGLDLSGNHFYGAV-PPFFGSCSLLESLALS 326

Query: 626 LCVNCEHLPPLGKLPLEKL-QLKNLKS 651
                 +    G+LP++ L +++ LK 
Sbjct: 327 SN----NF--SGELPMDTLLKMRGLKV 347

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERI-PETLCELYNLQK 457
            +  ++ S    +    N ++ +          L++L+LS   IE I  +    L++L  
Sbjct: 25  KVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSN 84

Query: 458 LDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L + G   ++    G    L ++ +L+   T L       I +L +L+ L
Sbjct: 85  LILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKL 133

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 48.1 bits (115), Expect = 7e-06
 Identities = 41/222 (18%), Positives = 65/222 (29%), Gaps = 32/222 (14%)

Query: 355 ECLWLQINGTKESVINSFGDNVRHLGLNFQRGASFPMSIHRF--------NRFSILSEL- 405
             + L     K           + L +   +   FP     F        N+ SI  +  
Sbjct: 288 SAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKV 347

Query: 406 -FSKLVFLRALRNWIREIPENV---GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIR 461
               L +L   RN +               L++L+LS      +      L  LQ LD +
Sbjct: 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQ 407

Query: 462 GCQYLRGLPAG--IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE----KFVVGGGV 515
               L+ +        L  +  L    T            LTSL TL+     F      
Sbjct: 408 HST-LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF-----K 461

Query: 516 DGGGTCRLESLKNLQLL--RKCSIEGL-----KGLSNVSHVD 550
           D   +    +  NL  L   KC +E +       L  +  ++
Sbjct: 462 DNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.3 bits (113), Expect = 1e-05
 Identities = 46/272 (16%), Positives = 89/272 (32%), Gaps = 45/272 (16%)

Query: 396 FNRFSIL-SELFSKLVFLRAL---RNWIREI--PENVGKLIHLKYLNLSELRIERIPET- 448
             + + L S    +L+ L+ L    N+I     P     L +L +++LS   I+ I    
Sbjct: 113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172

Query: 449 ---LCEL-YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLL-KYMPIGISRLTSL 503
              L E       LD+     +  +     + + +  L   G +     M   +  L  L
Sbjct: 173 LQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGL 231

Query: 504 RTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLS------NVSHVDEVERLQL 557
                               +  +NL++     +EGL  ++        ++    + ++ 
Sbjct: 232 HVHRL----------ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKF 281

Query: 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLT 617
           +   N+  + L  G  I+           LE +      + L I   +   FP     L 
Sbjct: 282 HCLANVSAMSLA-GVSIKY----------LEDVPKHFKWQSLSIIRCQLKQFPT--LDLP 328

Query: 618 NLRELKLSLCVNCEHLPPLGKLPLEKLQLKNL 649
            L+ L L+     +      K+ L  L   +L
Sbjct: 329 FLKSLTLT---MNKGSISFKKVALPSLSYLDL 357

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.8 bits (109), Expect = 4e-05
 Identities = 36/249 (14%), Positives = 64/249 (25%), Gaps = 36/249 (14%)

Query: 399 FSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRI--ERIPETLCELYNLQ 456
              L E     + L    N I  I +   + I L  L L         +   L  L  L 
Sbjct: 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLH 232

Query: 457 KLD-----IRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV 510
                    +  + L      I   L ++       TY        I +   L  +    
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTY-TNDFSDDIVKFHCLANVSAMS 291

Query: 511 VGGG-----VDGGGTCRLESLKNLQLLRKCSIEGL--KGLSNVSHVDEVERLQLYNKKNL 563
           + G       D     + +SL     + +C ++      L        ++ L L    N 
Sbjct: 292 LAGVSIKYLEDVPKHFKWQSLS----IIRCQLKQFPTLDLPF------LKSLTLTM--NK 339

Query: 564 LRLGLQFGG-------DIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSL 616
             +  +          D+     +         L    ++  L++      I       L
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTN-SLRHLDLSFNGAIIMSANFMGL 398

Query: 617 TNLRELKLS 625
             L+ L   
Sbjct: 399 EELQHLDFQ 407

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 39/248 (15%)

Query: 395 RFNRFSILSE-LFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIP-ET 448
            FN    L   +F  +  L  L   RN +  +P  +      L  L++S   +ERI  +T
Sbjct: 107 GFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT 166

Query: 449 LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK 508
                +LQ L +   + L  +   +  + ++         L        S L     +E+
Sbjct: 167 FQATTSLQNLQLSSNR-LTHVDLSL--IPSLFHANVSYNLL--------STLAIPIAVEE 215

Query: 509 FVVGG----GVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVD-------EVERLQL 557
                     V G     L  L  LQ         L     +  VD       ++     
Sbjct: 216 LDASHNSINVVRGPVNVELTIL-KLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPF 274

Query: 558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLT 617
              + L RL +           N +   L    QP   ++ L++         +      
Sbjct: 275 VKMQRLERLYIS----------NNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324

Query: 618 NLRELKLS 625
            L  L L 
Sbjct: 325 RLENLYLD 332

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 49.5 bits (118), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 7/90 (7%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL 452
           N    +    F K+  L  L    N +  +      +  LK L+LS   +  +     + 
Sbjct: 264 NELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQF 323

Query: 453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSL 482
             L+ L +     +  L         +++L
Sbjct: 324 DRLENLYLDHNS-IVTLKLST--HHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 45.7 bits (108), Expect = 4e-05
 Identities = 24/116 (20%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 397 NRFSILSEL-FSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIP-ETLCELY 453
           + +    ++  +    +    + +R++P  +      ++ LNL++L+IE I        +
Sbjct: 40  DVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAH 99

Query: 454 NLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLRTL 506
            +QKL +     +R LP  + + +  +  L L      L  +P GI      L TL
Sbjct: 100 TIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTL 152

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 44/219 (20%), Positives = 74/219 (33%), Gaps = 36/219 (16%)

Query: 352 SSKECLWLQINGTKESVINSFGD--NVRHLGLNFQRGASFPMSIHRFNRFSILSEL---- 405
           +S   L L  NG KES+   F D      +       +    S      F          
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 406 --FSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIR 461
              S +      ++ I  + ++V      L+ L L++  I +I +     L +L KL++ 
Sbjct: 272 LEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS 331

Query: 462 GCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLE------KF 509
               L  + + +   L  +  L      L    ++ +       L +L+ L       K 
Sbjct: 332 QNF-LGSIDSRMFENLDKLEVL-----DLSYNHIRALGDQSFLGLPNLKELALDTNQLKS 385

Query: 510 VVGGGVDGGGTCRLESLKNLQLLR---KCSIEGLKGLSN 545
           V  G  D     RL SL+ + L      CS   +  LS 
Sbjct: 386 VPDGIFD-----RLTSLQKIWLHTNPWDCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.7 bits (98), Expect = 7e-04
 Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 10/121 (8%)

Query: 396 FNRFSILSE-LFSKLVFLRALR---NWI-REIPENV-GKLIHLKYLNLSELRIERIPE-T 448
            N  + L+E  FS+L  L+ L+         I  N    L  L  L L   +  ++    
Sbjct: 39  LNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGA 98

Query: 449 LCELYNLQKLDIRGCQ-YLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRT 505
              L NL+ L +  C      L     + L ++  L+     + K  P      +     
Sbjct: 99  FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHV 158

Query: 506 L 506
           L
Sbjct: 159 L 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 25/144 (17%), Positives = 52/144 (36%), Gaps = 30/144 (20%)

Query: 417 NWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGI- 473
           N I+ IP         L+ ++LS  +I  +       L +L  L + G + +  LP  + 
Sbjct: 42  NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLF 100

Query: 474 RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLE------KFVVGGGVDGGGTCR 522
             L +++ L      L    +  + +     L +L  L       + +  G         
Sbjct: 101 EGLFSLQLL-----LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS-----P 150

Query: 523 LESLKNLQLLR-----KCSIEGLK 541
           L +++ + L +      C ++ L 
Sbjct: 151 LRAIQTMHLAQNPFICDCHLKWLA 174

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 406 FSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDI 460
           F  L  L +L    N I E+P+++   L  L+ L L+  +I  +      +L+NL  L +
Sbjct: 76  FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSL 135

Query: 461 RGCQYLRGLPAGI-RKLMNMRSL 482
              + L+ +  G    L  ++++
Sbjct: 136 YDNK-LQTIAKGTFSPLRAIQTM 157

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.0 bits (116), Expect = 3e-06
 Identities = 22/117 (18%), Positives = 45/117 (38%), Gaps = 4/117 (3%)

Query: 391 MSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLC 450
           +        S+L   ++ +  L      +  +  ++ +L+ + +L+LS  R+  +P  L 
Sbjct: 425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLRALPPALA 483

Query: 451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTL 506
            L  L+ L       L  +  G+  L  ++ LL     L +   I  +     L  L
Sbjct: 484 ALRCLEVLQASDNA-LENVD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.4 bits (113), Expect = 7e-06
 Identities = 33/184 (17%), Positives = 69/184 (37%), Gaps = 27/184 (14%)

Query: 397 NRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
           +    +  +     +  L    N + +I + +  L +L +L L E +++ +  +L +L  
Sbjct: 56  SDIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDL-SSLKDLKK 113

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGG 514
           L+ L +     +  +  G+  L  + SL      +       +SRLT L TL        
Sbjct: 114 LKSLSLEHNG-ISDIN-GLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLS------- 162

Query: 515 VDGGGTCRLESLKNLQLLRK--------CSIEGLKGLSNVSHVD----EVERLQLYNKKN 562
           ++      +  L  L  L+           +  L GL N+  ++    E     + ++ N
Sbjct: 163 LEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSN 222

Query: 563 LLRL 566
           L+  
Sbjct: 223 LVVP 226

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 46/253 (18%), Positives = 89/253 (35%), Gaps = 48/253 (18%)

Query: 404 ELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGC 463
           + F++ +     +  + +      +L  +  +  +   I+ + + +  L N+ KL + G 
Sbjct: 21  DAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGN 78

Query: 464 QYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG----GVDGGG 519
           + L  +   +  L N+  L  D   +       +S L  L+ L+   +       ++G  
Sbjct: 79  K-LTDIK-PLANLKNLGWLFLDENKVKD-----LSSLKDLKKLKSLSLEHNGISDING-- 129

Query: 520 TCRLESLKNLQLL--RKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGR 577
              L  L  L+ L      I  +  LS ++ +   + L L +  N +        DI   
Sbjct: 130 ---LVHLPQLESLYLGNNKITDITVLSRLTKL---DTLSLED--NQIS-------DIVPL 174

Query: 578 RKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLG 637
               K    L+ L     + +  I   R       L  L NL  L+L     C + P   
Sbjct: 175 AGLTK----LQNL----YLSKNHISDLRA------LAGLKNLDVLELFSQ-ECLNKPINH 219

Query: 638 KLPLEKL-QLKNL 649
           +  L     +KN 
Sbjct: 220 QSNLVVPNTVKNT 232

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 9e-06
 Identities = 43/236 (18%), Positives = 77/236 (32%), Gaps = 64/236 (27%)

Query: 417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKL 476
             I++I             NL +  +     T  EL ++ ++              I+ +
Sbjct: 9   TPIKQI-FPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD--------IKSV 58

Query: 477 MNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKC- 535
             ++ L N     +  + +  ++LT ++ L                L++L  L L     
Sbjct: 59  QGIQYLPN-----VTKLFLNGNKLTDIKPLTN--------------LKNLGWLFLDENKI 99

Query: 536 -SIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL 594
             +  LK L  +      + L L +  N +        DI G          L  L    
Sbjct: 100 KDLSSLKDLKKL------KSLSLEH--NGIS-------DING----------LVHLP--- 131

Query: 595 NVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN 648
            +E L + + +  +I    L+ LT L  L L        + PL  L  L+ L L  
Sbjct: 132 QLESLYLGNNKITDITV--LSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 3e-05
 Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 41/229 (17%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLD 459
              +EL + +  + A  + I+ + + +  L ++  L L+  ++  I + L  L NL  L 
Sbjct: 37  VTQNEL-NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLF 93

Query: 460 IRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGG 518
           +   + ++ L   ++ L  ++SL  +   +     I G+  L  L +L        +   
Sbjct: 94  LDENK-IKDLS-SLKDLKKLKSLSLEHNGISD---INGLVHLPQLESLY-------LGNN 141

Query: 519 GTCRLESLKNLQLLRKCSIEG--LKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG 576
               +  L  L  L   S+E   +  +  ++ + +++ L L    N +        D+  
Sbjct: 142 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSK--NHIS-------DLRA 192

Query: 577 RRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKL 624
                     L  L+   N++ LE+ S    N      ++L     +K 
Sbjct: 193 ----------LAGLK---NLDVLELFSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 43.9 bits (103), Expect = 2e-04
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 6/113 (5%)

Query: 397 NRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
           N  S ++ L    +L  L    N I +I   + +L  L  L+L + +I  I   L  L  
Sbjct: 119 NGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTK 176

Query: 455 LQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE 507
           LQ L +     +  L   +  L N+  L       L       S L    T++
Sbjct: 177 LQNLYLSKNH-ISDLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 43/246 (17%), Positives = 86/246 (34%), Gaps = 40/246 (16%)

Query: 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQY 465
            +  + + A ++ + +       L  +  L+     +  I E +  L NL  L+++  Q 
Sbjct: 18  LANAIKIAAGKSNVTDT-VTQADLDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQ- 74

Query: 466 LRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLES 525
           +  L   ++ L  +  L   G  L       I+ L S++TL+       +       +  
Sbjct: 75  ITDLA-PLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLD-------LTSTQITDVTP 124

Query: 526 LKNLQLLRKCSIEG--LKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKD 583
           L  L  L+   ++   +  +S ++ +  ++ L + N    +        D+         
Sbjct: 125 LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGN--AQVS-------DLTPLAN---- 171

Query: 584 KQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LE 642
              L  L   L  ++ +I           L SL NL E+ L        + PL     L 
Sbjct: 172 ---LSKLT-TLKADDNKISDISP------LASLPNLIEVHLKNN-QISDVSPLANTSNLF 220

Query: 643 KLQLKN 648
            + L N
Sbjct: 221 IVTLTN 226

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 28/268 (10%)

Query: 396 FNRFSILSE-LFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPET--L 449
            NR   L   +F     L  L    N + +I  +    ++LK+L+LS    + +P     
Sbjct: 54  HNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEF 111

Query: 450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLEK 508
             +  L+ L +      +     I  L   + LL  G    +      +    +      
Sbjct: 112 GNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV 171

Query: 509 FVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGL 568
           F             ++++ NL+L        +K +   +       +    + N     L
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSN------IKCVLEDNKCSYFLSILAKLQTNPKLSNL 225

Query: 569 QFGGDIEGRRKNEKDKQLLEALQP--PLNVEELEIESYRGNIFPKWL---TSLTNLRELK 623
                             +  LQ      V    I + +      +     S T+L+ L 
Sbjct: 226 TL------NNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALS 279

Query: 624 LS-LCVNCEHLPPLG-KLPLEKLQLKNL 649
           +  +  +    P          + +KN 
Sbjct: 280 IHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 45.6 bits (108), Expect = 4e-05
 Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 26/269 (9%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE-LYNLQK 457
            +  +L  K   L   +N+I E+  +    L  L+ L +S  RI+ +  ++ +    L+ 
Sbjct: 14  HVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEY 73

Query: 458 LDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL----LKYMPIG--ISRLTSLRTLE---- 507
           LD+   + L  +       +N++ L      L       +PI      ++ L+ L     
Sbjct: 74  LDLSHNK-LVKIS--CHPTVNLKHL-----DLSFNAFDALPICKEFGNMSQLKFLGLSTT 125

Query: 508 --KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVS-HVDEVERLQ---LYNKK 561
             +      +      ++  +       K   EGL+  +  S H+      +   + +  
Sbjct: 126 HLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVS 185

Query: 562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRE 621
                 L+          N+    L    +   N +   +              +  L  
Sbjct: 186 VKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVW 245

Query: 622 LKLSLCVNCEHLPPLGKLPLEKLQLKNLK 650
                  +  ++   G+L           
Sbjct: 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 23/120 (19%), Positives = 47/120 (39%), Gaps = 11/120 (9%)

Query: 395 RFNRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETL 449
           + N+ + + +  F  L  L  L    N I +I       L+ L+ L LS+ +++ +PE +
Sbjct: 60  QNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM 119

Query: 450 CELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL-LNDGTYLLKYMPIGI-SRLTSLRTL 506
                LQ+L +   + +  +   +   L  M  + L         +  G    +  L  +
Sbjct: 120 --PKTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 176

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 20/113 (17%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE 451
           N+ + +       L  L  L    N I  +         HL+ L+L+  ++ ++P  L +
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD 261

Query: 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR 504
              +Q + +                 N  S +    +         +  + + 
Sbjct: 262 HKYIQVVYLHN---------------NNISAIGSNDFCPPGYNTKKASYSGVS 299

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 11/98 (11%)

Query: 400 SILSELFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPE----TLCE 451
           ++   LFS L  L  L    N I  +  N    +  L+ L LS+ +I R P        +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNK 161

Query: 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL 489
           L  L  LD+   + L+ LP     L  + + + +G YL
Sbjct: 162 LPKLMLLDLSSNK-LKKLPLTD--LQKLPAWVKNGLYL 196

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.8 bits (106), Expect = 5e-05
 Identities = 33/179 (18%), Positives = 55/179 (30%), Gaps = 31/179 (17%)

Query: 400 SILSELFSKLVFLRALRNWIREIPENV--GKLIHLKYLNLSELRIERIPE-TLCELYNLQ 456
           ++   L S    L    N +  +       +L +L  L LS   +  I       + NL+
Sbjct: 32  NVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLR 91

Query: 457 KLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTLE--- 507
            LD+     L  L   +   L  +  L      L    +  +       +  L+ L    
Sbjct: 92  YLDLSSNH-LHTLDEFLFSDLQALEVL-----LLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 508 ---KFVVGGGVDGGGTCRLESLKNLQL----LRKCSIEGLKGLSNVSHVDEVERLQLYN 559
                     +  G   +L  L  L L    L+K  +  L+ L           L L+N
Sbjct: 146 NQISRFPVELIKDGN--KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK----NGLYLHN 198

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 5/115 (4%)

Query: 395 RFNRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCE 451
                + L+ +     +  L             +  L +L+ L +    +       L  
Sbjct: 52  ANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSG 110

Query: 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L +L  LDI    +   +   I  L  + S+       +  +   +  L  L++L
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSL 164

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 27/98 (27%), Positives = 48/98 (48%), Gaps = 14/98 (14%)

Query: 417 NWIREIPENV-GKLIHLKYLNLSELRIERIPETLC-ELYNLQKLDIRGCQYLRGLPAGI- 473
           N +  +P     +L  L+ L L++ +++ +P  +  EL NL+ L +   + L+ LP G+ 
Sbjct: 47  NKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVF 105

Query: 474 RKLMNMRSLLNDGTYL----LKYMPIGI-SRLTSLRTL 506
            +L+N+  L      L    LK +P  +   LT L  L
Sbjct: 106 DQLVNLAEL-----RLDRNQLKSLPPRVFDSLTKLTYL 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 43.4 bits (103), Expect = 1e-04
 Identities = 32/114 (28%), Positives = 57/114 (50%), Gaps = 9/114 (7%)

Query: 400 SILSELFSKLVFLRAL---RNWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE-LYN 454
           ++   +F +LV L  L   RN ++ +P  V   L  L YL+L    ++ +P+ + + L +
Sbjct: 99  ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158

Query: 455 LQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGI-SRLTSLRTL 506
           L++L +   Q L+ +P G   KL  +++ L      LK +P G    L  L+ L
Sbjct: 159 LKELRLYNNQ-LKRVPEGAFDKLTELKT-LKLDNNQLKRVPEGAFDSLEKLKML 210

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 20/124 (16%), Positives = 38/124 (30%), Gaps = 15/124 (12%)

Query: 397 NRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETLCE 451
           N+   +      +   L  L    N IR I       L  L+ L+L   ++ R+P  L +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262

Query: 452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYL-LKYMPIGISR--------LTS 502
           L  LQ + +     +  +       +           + L   P+            +T 
Sbjct: 263 LKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTD 321

Query: 503 LRTL 506
              +
Sbjct: 322 RLAI 325

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 44.2 bits (105), Expect = 7e-05
 Identities = 28/94 (29%), Positives = 42/94 (44%), Gaps = 9/94 (9%)

Query: 395 RFNRFSILSE-LFSKLVFLRALR---NWIREIPENV-GKLIHLKYLNLSELRIERIPETL 449
           + N  S L +  F  L  L AL    N I +I E     L  L+ L +S+  +  IP  L
Sbjct: 62  QNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL 121

Query: 450 CELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSL 482
               +L +L I   + +R +P G+   L NM  +
Sbjct: 122 --PSSLVELRIHDNR-IRKVPKGVFSGLRNMNCI 152

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.9 bits (106), Expect = 8e-05
 Identities = 36/216 (16%), Positives = 68/216 (31%), Gaps = 53/216 (24%)

Query: 356 CLWLQINGTKESVINSFG--DNVRHLGLNFQRGASFPMSIHRFNRF-SILSELFSKLVFL 412
              L I+ T    +       +   L                 N F   + +  S L  L
Sbjct: 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQ-------------NVFTDSVFQGCSTLKRL 379

Query: 413 RAL---RNWIREIPENVGKLIHLKYLNLSELRIERIP----ETLCEL-YNLQKLDIRGCQ 464
           + L   RN ++   +      ++  L   ++ +  +     +  C    ++  L++    
Sbjct: 380 QTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNM 439

Query: 465 YLRGLPAGIRKLMNMRSLLNDGTYL------LKYMPIGISRLTSLRTLE------KFVVG 512
               L   +      R L      L      +  +P  ++ L +L+ L       K V  
Sbjct: 440 ----LTGSV-----FRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPD 490

Query: 513 GGVDGGGTCRLESLKNLQLLR---KCSIEGLKGLSN 545
           G  D     RL SL+ + L      C+  G++ LS 
Sbjct: 491 GVFD-----RLTSLQYIWLHDNPWDCTCPGIRYLSE 521

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 38/133 (28%), Positives = 58/133 (43%), Gaps = 24/133 (18%)

Query: 412 LRALRNWIREIPENV-GKLIHLKYLNLSELRIERIPETLC-ELYNLQKLDIRGCQYLRGL 469
           L    N I ++   V   LI+LK L L   ++  +P  +   L  L  LD+   Q L  L
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVL 103

Query: 470 PAGI-RKLMNMRSLLNDGTYL----LKYMPIGISRLTSLRTLE------KFVVGGGVDGG 518
           P+ +  +L++++ L     ++    L  +P GI RLT L  L       K +  G  D  
Sbjct: 104 PSAVFDRLVHLKEL-----FMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFD-- 156

Query: 519 GTCRLESLKNLQL 531
              RL SL +  L
Sbjct: 157 ---RLSSLTHAYL 166

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 27/104 (25%), Positives = 47/104 (45%), Gaps = 14/104 (13%)

Query: 408 KLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLR 467
           + V L  +   I ++   +  L   K+L LS   IE+I  +L  + NL+ L +       
Sbjct: 26  EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNL--- 81

Query: 468 GLPAGIRKLMNMRSLLNDGTYL-LKYMPI----GISRLTSLRTL 506
                I+K+ N+ ++ +    L + Y  I    GI +L +LR L
Sbjct: 82  -----IKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVL 120

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.4 bits (100), Expect = 4e-04
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 9/101 (8%)

Query: 406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQY 465
             +L FL    N + EI   V  L  L Y + S   +  +  +      L  L       
Sbjct: 211 NIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLS--KLTTLHCIQTD- 265

Query: 466 LRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL 506
           L  +   +     +     +G   +K   + ++  T L  L
Sbjct: 266 LLEID--LTHNTQLIYFQAEGCRKIK--ELDVTHNTQLYLL 302

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.0 bits (94), Expect = 5e-04
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 402 LSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE-LYNLQKLDI 460
           L++ F +L FL  +   +  I  N+ KL  LK L LS+ R+    E L E   NL  L++
Sbjct: 37  LTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL 95

Query: 461 RGCQ--------YLRGLP 470
            G +         L+ L 
Sbjct: 96  SGNKIKDLSTIEPLKKLE 113

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 5e-04
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 13/86 (15%)

Query: 397 NRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE-L 452
            +  ++  L + L    A+    N IR++ +    L  LK L ++  RI RI E L + L
Sbjct: 29  YKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87

Query: 453 YNLQKLDIRGCQ--------YLRGLP 470
            +L +L +             L  L 
Sbjct: 88  PDLTELILTNNSLVELGDLDPLASLK 113

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 38/179 (21%)

Query: 396 FNRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY 453
            +    L+ +  F+ L  L    N I ++   +  L  L+ L+++  R++ +        
Sbjct: 50  NSNIQSLAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNG--IPSA 106

Query: 454 NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG 513
            L +L +   +        +R   ++  L N     L+ + I  ++L S+  L       
Sbjct: 107 CLSRLFLDNNE--------LRDTDSLIHLKN-----LEILSIRNNKLKSIVMLGF----- 148

Query: 514 GVDGGGTCRLESLKNLQLL--RKCSIEGLKGLSNVSHVD----EVERLQLYNKKNLLRL 566
                    L  L+ L L      +  GL  L  V+ +D    +     +  +  L   
Sbjct: 149 ---------LSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYIT 198

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	662
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.74
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.71
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.7
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.69
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.68
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.68
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.68
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	99.67
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.67
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.67
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.66
3qfl_A	115	MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-	99.65
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.65
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.65
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.64
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.64
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.64
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.63
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.63
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	99.63
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.62
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.62
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.61
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.61
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.61
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.61
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.61
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.6
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.6
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.6
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.6
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.6
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.59
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.59
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.58
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.58
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.57
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.57
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.56
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.56
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.56
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.56
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.55
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.54
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.54
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.52
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.51
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.51
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.51
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.5
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.5
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.5
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.5
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.49
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.49
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.48
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.47
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.47
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.45
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.45
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.45
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.43
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.42
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.41
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.39
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.38
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.37
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.35
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.34
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.34
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.34
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.31
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.31
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.31
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.28
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.24
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.24
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.17
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.12
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.12
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.12
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.12
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.09
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.07
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.01
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.0
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.0
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.0
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.99
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.99
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.99
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.98
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.98
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.96
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.95
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.94
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.94
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.89
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.89
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.88
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.87
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.87
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.78
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.72
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.71
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.67
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.65
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.64
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.63
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.63
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.39
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.11
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.06
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.89
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.57
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.29
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.63
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.4
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.31
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.27
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.25
2chg_A	226	Replication factor C small subunit; DNA-binding pr	94.59
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	94.17
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.07
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	93.79
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	93.29
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	92.97
2fna_A	357	Conserved hypothetical protein; structural genomic	91.29
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	89.43
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.22
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	88.1
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	86.41
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	85.61
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	85.55
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	82.66

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=99.92  E-value=8.1e-25  Score=240.76  Aligned_cols=156  Identities=17%  Similarity=0.202  Sum_probs=121.5

Q ss_pred             CCceEEEEcccHHHHhhhC-CCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhh
Q 044550          193 HGSKIFVTTRNESVARMMG-STNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLL  271 (662)
Q Consensus       193 ~gSrIivTTR~~~v~~~~~-~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L  271 (662)
                      +||+||||||++.|+..++ ...+|++++|++++||+||.++||...   .++++++++++|+++|+|+||||+++|+.|
T Consensus       264 ~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~---~~~~~~~~~~~I~~~c~GlPLAl~~~g~~l  340 (549)
T 2a5y_B          264 LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMP---VGEKEEDVLNKTIELSSGNPATLMMFFKSC  340 (549)
T ss_dssp             TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             CCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCC---CchhHHHHHHHHHHHhCCChHHHHHHHHHh
Confidence            7999999999999999886 346899999999999999999998643   246888999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHhhhhhhh------------------------h--------------------------hhhc--Ccc
Q 044550          272 RSKSTVKEWQRILESEMWKV------------------------L--------------------------EIGQ--GYL  299 (662)
Q Consensus       272 ~~~~~~~~w~~~l~~~~~~~------------------------~--------------------------~iae--g~i  299 (662)
                      +.+ .. +|...+.+..+..                        .                          .+|+  ||+
T Consensus       341 ~~~-~w-~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~i~~w~a~~~G~i  418 (549)
T 2a5y_B          341 EPK-TF-EKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIPVKLWSCVIPVDI  418 (549)
T ss_dssp             CSS-SH-HHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEEHHHHHHHSCC--
T ss_pred             ccc-hH-HHHHHhHHHhhcccHHHHHHHHhcccccccHHHHHHHhccchhhhhHhhheeeeCCCCeeeeeeeeeecccee
Confidence            877 33 3333343332210                        0                          0778  888


Q ss_pred             cCCC-CchHHHHHHHHHHHHHhcCcccccccCCCCCeeeEEcChHHHHHHHHhhccceE
Q 044550          300 NAKE-DEEMEMIGEECFNILAARSFFQEFKKNDDDDIMSCKMHDIVHDFAQFVSSKECL  357 (662)
Q Consensus       300 ~~~~-~~~~~~~~~~~~~~L~~rsli~~~~~~~~~~~~~~~mHdll~dl~~~i~~~e~~  357 (662)
                      .... +.+.+++++ ||++|++|||+++...+   ...+|+|||++|++|++++.++++
T Consensus       419 ~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~~~~~~~~  473 (549)
T 2a5y_B          419 CSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKHVVDAQTI  473 (549)
T ss_dssp             -----CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHTTSCTHHH
T ss_pred             ccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHHHHHHHHH
Confidence            8766 677888888 99999999999987643   456899999999999999988764

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.78  E-value=8.5e-19  Score=213.02  Aligned_cols=202  Identities=20%  Similarity=0.291  Sum_probs=148.6

Q ss_pred             ccCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------ccch-----------------
Q 044550          140 IDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------EPFF-----------------  185 (662)
Q Consensus       140 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~-----------------  185 (662)
                      ...+.+|||++++++|.++|.....    ..++|+|+||||+                 .+|.                 
T Consensus       121 ~~~~~~vgR~~~~~~l~~~l~~~~~----~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  196 (1249)
T 3sfz_A          121 QRPVIFVTRKKLVHAIQQKLWKLNG----EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLL  196 (1249)
T ss_dssp             CCCSSCCCCHHHHHHHHHHHHTTTT----SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHHH
T ss_pred             CCCceeccHHHHHHHHHHHHhhccC----CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchHHH
Confidence            3456799999999999999986543    7799999999999                 1132                 


Q ss_pred             ----------------------------------------------------hhhhcCCCCceEEEEcccHHHHhh-hCC
Q 044550          186 ----------------------------------------------------LRLKNGLHGSKIFVTTRNESVARM-MGS  212 (662)
Q Consensus       186 ----------------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~-~~~  212 (662)
                                                                          ..+...++|||||||||++.|+.. ++.
T Consensus       197 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~~~~~~~~~~  276 (1249)
T 3sfz_A          197 MKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKAFDNQCQILLTTRDKSVTDSVMGP  276 (1249)
T ss_dssp             HHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCHHHHTTTCSSCEEEEEESSTTTTTTCCSC
T ss_pred             HHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCHHHHHhhcCCCEEEEEcCCHHHHHhhcCC
Confidence                                                                223334689999999999999965 455


Q ss_pred             CCeeeCCC-CChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh--
Q 044550          213 TNIISIKQ-LAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW--  289 (662)
Q Consensus       213 ~~~~~l~~-L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~--  289 (662)
                      ...+.+.+ |++++||+||...++..     .+.+.+++++|+++|+|+||||+++|++|+.++  ..|+..+.....  
T Consensus       277 ~~~~~~~~~l~~~~a~~l~~~~~~~~-----~~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~  349 (1249)
T 3sfz_A          277 KHVVPVESGLGREKGLEILSLFVNMK-----KEDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQ  349 (1249)
T ss_dssp             BCCEECCSSCCHHHHHHHHHHHHTSC-----STTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCC
T ss_pred             ceEEEecCCCCHHHHHHHHHHhhCCC-----hhhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhh
Confidence            77999996 99999999999998532     234557799999999999999999999999875  356655543210  


Q ss_pred             ----------------hhhhhhc--------------CcccCCCC----------chHHHHHHHHHHHHHhcCccccccc
Q 044550          290 ----------------KVLEIGQ--------------GYLNAKED----------EEMEMIGEECFNILAARSFFQEFKK  329 (662)
Q Consensus       290 ----------------~~~~iae--------------g~i~~~~~----------~~~~~~~~~~~~~L~~rsli~~~~~  329 (662)
                                      ....+++              +.+.+...          ...++.++.++++|+++||++... 
T Consensus       350 ~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~-  428 (1249)
T 3sfz_A          350 FKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNR-  428 (1249)
T ss_dssp             CCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEE-
T ss_pred             hhhcccccccchHHHHHHHHHHHHhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEec-
Confidence                            0001111              11111110          111466789999999999998654 


Q ss_pred             CCCCCeeeEEcChHHHHHHHHhhccc
Q 044550          330 NDDDDIMSCKMHDIVHDFAQFVSSKE  355 (662)
Q Consensus       330 ~~~~~~~~~~mHdll~dl~~~i~~~e  355 (662)
                        ++...+|+|||++|++++..+.++
T Consensus       429 --~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          429 --NGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             --SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             --CCCceEEEecHHHHHHHHhhhhHH
Confidence              345567999999999999998776

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=3.7e-19  Score=182.84  Aligned_cols=207  Identities=23%  Similarity=0.303  Sum_probs=108.8

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCc
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG  496 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~  496 (662)
                      +.+..+|..++++++|++|+|++|.++.+|..++++++|++|++++|. +..+|..++++++|++|++++|.....+|..
T Consensus        91 n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~  169 (328)
T 4fcg_A           91 VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEP  169 (328)
T ss_dssp             SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEEEEETTCCCCCSC
T ss_pred             CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEECCCCCCccccChh
Confidence            344444444555555555555555555555555555555555555554 3455555555555555555554444445544


Q ss_pred             CCC---------CCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEE
Q 044550          497 ISR---------LTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLG  567 (662)
Q Consensus       497 i~~---------L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  567 (662)
                      ++.         +++|++|++..+  ... ..+.   .+..+++|+.|.+.+..    +...    ...+..+++|+.|+
T Consensus       170 ~~~~~~~~~~~~l~~L~~L~L~~n--~l~-~lp~---~l~~l~~L~~L~L~~N~----l~~l----~~~l~~l~~L~~L~  235 (328)
T 4fcg_A          170 LASTDASGEHQGLVNLQSLRLEWT--GIR-SLPA---SIANLQNLKSLKIRNSP----LSAL----GPAIHHLPKLEELD  235 (328)
T ss_dssp             SEEEC-CCCEEESTTCCEEEEEEE--CCC-CCCG---GGGGCTTCCEEEEESSC----CCCC----CGGGGGCTTCCEEE
T ss_pred             HhhccchhhhccCCCCCEEECcCC--CcC-cchH---hhcCCCCCCEEEccCCC----CCcC----chhhccCCCCCEEE
Confidence            432         455555542221  111 1111   12333333333333320    0110    11244556666666


Q ss_pred             EEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-ccee
Q 044550          568 LQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKL  644 (662)
Q Consensus       568 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l  644 (662)
                      ++.+....         .....+..+++|+.|++++|. ...+|.++..+++|++|+|++|...+.+|. ++.+| ++.+
T Consensus       236 Ls~n~~~~---------~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          236 LRGCTALR---------NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             CTTCTTCC---------BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CcCCcchh---------hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            66543210         122345566788888888765 345687888888888888888887777764 67777 7777


Q ss_pred             ecc
Q 044550          645 QLK  647 (662)
Q Consensus       645 ~l~  647 (662)
                      .+.
T Consensus       307 ~l~  309 (328)
T 4fcg_A          307 LVP  309 (328)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            665

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.78  E-value=3.1e-19  Score=182.29  Aligned_cols=241  Identities=22%  Similarity=0.278  Sum_probs=182.9

Q ss_pred             CceeEEEEecCCCCC---cccccccccccccchHhhhcCcccccc---c-cccc-ccCcccCCCCccceeeecCCCCc-c
Q 044550          374 DNVRHLGLNFQRGAS---FPMSIHRFNRFSILSELFSKLVFLRAL---R-NWIR-EIPENVGKLIHLKYLNLSELRIE-R  444 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~---~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~-~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~  444 (662)
                      ..++.+.+..+.+..   +|..             +.+++.|+.+   + +.+. .+|..++++++|++|++++|.++ .
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~-------------l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~  116 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSS-------------LANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA  116 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGG-------------GGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE
T ss_pred             ceEEEEECCCCCccCCcccChh-------------HhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc
Confidence            578899998887763   3332             5566666666   2 5554 67999999999999999999998 8


Q ss_pred             cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCC-CCCccCceeecCccCCCCccCc
Q 044550          445 IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLT-SLRTLEKFVVGGGVDGGGTCRL  523 (662)
Q Consensus       445 lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~-~L~~L~~~~~~~~~~~~~~~~l  523 (662)
                      +|..++++++|++|++++|.....+|..+..+++|++|++++|.....+|..++.++ +|+.|++.  .+...+..+..+
T Consensus       117 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~--~N~l~~~~~~~~  194 (313)
T 1ogq_A          117 IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS--RNRLTGKIPPTF  194 (313)
T ss_dssp             CCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECC--SSEEEEECCGGG
T ss_pred             CCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECc--CCeeeccCChHH
Confidence            899999999999999999984458899999999999999999987668999999998 99999743  333322223334


Q ss_pred             cccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEee
Q 044550          524 ESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIES  603 (662)
Q Consensus       524 ~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~  603 (662)
                      ..   ++ |+.|.+++.       .+.......+..+++|+.|+++.+...          .....+..+++|++|++++
T Consensus       195 ~~---l~-L~~L~Ls~N-------~l~~~~~~~~~~l~~L~~L~L~~N~l~----------~~~~~~~~l~~L~~L~Ls~  253 (313)
T 1ogq_A          195 AN---LN-LAFVDLSRN-------MLEGDASVLFGSDKNTQKIHLAKNSLA----------FDLGKVGLSKNLNGLDLRN  253 (313)
T ss_dssp             GG---CC-CSEEECCSS-------EEEECCGGGCCTTSCCSEEECCSSEEC----------CBGGGCCCCTTCCEEECCS
T ss_pred             hC---Cc-ccEEECcCC-------cccCcCCHHHhcCCCCCEEECCCCcee----------eecCcccccCCCCEEECcC
Confidence            33   33 666665543       112223345678899999999876430          1122356779999999999


Q ss_pred             cCCC-CCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccccc
Q 044550          604 YRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLK  650 (662)
Q Consensus       604 ~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~  650 (662)
                      |.+. .+|.++..+++|++|+|++|.....+|..+.+| |+.+.+.+-+
T Consensus       254 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             CcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCC
Confidence            9987 789999999999999999998777888888888 7777666544

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.74  E-value=5e-18  Score=174.42  Aligned_cols=220  Identities=20%  Similarity=0.280  Sum_probs=171.2

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      ...++.|.+..+.+..+|..+             .+++.|+.+   +|.+..+|..++++++|++|+|++|.++.+|..+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l-------------~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l  146 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQA-------------FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASI  146 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCG-------------GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGG
T ss_pred             ccceeEEEccCCCchhcChhh-------------hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHH
Confidence            467889999998888776554             334455555   6788899999999999999999999999999999


Q ss_pred             hcCCCccEEeccCCCCCccCCccccc---------cccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCc
Q 044550          450 CELYNLQKLDIRGCQYLRGLPAGIRK---------LMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGT  520 (662)
Q Consensus       450 ~~L~~L~~L~l~~~~~l~~lP~~i~~---------L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~  520 (662)
                      +++++|++|++++|..+..+|..++.         +++|++|++++|.. ..+|..++.+++|++|++  .++.... .+
T Consensus       147 ~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l-~~lp~~l~~l~~L~~L~L--~~N~l~~-l~  222 (328)
T 4fcg_A          147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQNLKSLKI--RNSPLSA-LG  222 (328)
T ss_dssp             GGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-CCCCGGGGGCTTCCEEEE--ESSCCCC-CC
T ss_pred             hcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-CcchHhhcCCCCCCEEEc--cCCCCCc-Cc
Confidence            99999999999999888999988765         99999999999976 589999999999999974  3444321 22


Q ss_pred             cCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEE
Q 044550          521 CRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE  600 (662)
Q Consensus       521 ~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~  600 (662)
                         ..+..+++|+.|.+++.....       .....+..+++|+.|+++.+....         .....+..+++|+.|+
T Consensus       223 ---~~l~~l~~L~~L~Ls~n~~~~-------~~p~~~~~l~~L~~L~L~~n~~~~---------~~p~~~~~l~~L~~L~  283 (328)
T 4fcg_A          223 ---PAIHHLPKLEELDLRGCTALR-------NYPPIFGGRAPLKRLILKDCSNLL---------TLPLDIHRLTQLEKLD  283 (328)
T ss_dssp             ---GGGGGCTTCCEEECTTCTTCC-------BCCCCTTCCCCCCEEECTTCTTCC---------BCCTTGGGCTTCCEEE
T ss_pred             ---hhhccCCCCCEEECcCCcchh-------hhHHHhcCCCCCCEEECCCCCchh---------hcchhhhcCCCCCEEe
Confidence               245666677777777642111       122346778899999998765321         1233456678999999


Q ss_pred             EeecC-CCCCCcccccccCccEEEecCCC
Q 044550          601 IESYR-GNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       601 l~~~~-~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      +++|. ...+|.++..+++|+.+.+..+.
T Consensus       284 L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          284 LRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            99976 45689999999999999999765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.71  E-value=6.5e-17  Score=170.62  Aligned_cols=122  Identities=18%  Similarity=0.187  Sum_probs=69.8

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccch-
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-  447 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-  447 (662)
                      ...++.+.+..+.+..+|..+            +..++.|+++   ++.+..+|. .+..+++|++|++++|.++.+|+ 
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~------------~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  111 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAAL------------LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPH  111 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHH------------HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             cCCceEEEecCCchhhCChhH------------hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHH
Confidence            356777777777666554332            4444445544   345555533 55666666666666666665543 


Q ss_pred             hhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          448 TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       448 ~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      .++++++|++|++++|. +..+|..+ ..+++|++|++++|......|..++.+++|++|+
T Consensus       112 ~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  171 (390)
T 3o6n_A          112 VFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  171 (390)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEE
T ss_pred             HhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEE
Confidence            35666666666666665 55555543 5666666666666654333344456666666664

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.70  E-value=5.7e-17  Score=180.76  Aligned_cols=121  Identities=18%  Similarity=0.186  Sum_probs=71.6

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccch-h
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIPE-T  448 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~  448 (662)
                      ..++.+.+..+.+..+|.            ..+..++.|++|   +|.+..+| ..++.+++|++|+|++|.++.+|+ .
T Consensus        51 ~~l~~l~l~~~~l~~lp~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  118 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPA------------ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV  118 (597)
T ss_dssp             CCCSEEEESSCEESEECT------------HHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCceEEEeeCCCCCCcCH------------HHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH
Confidence            345556555555444432            234555555555   35555554 356666777777777776666654 3


Q ss_pred             hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          449 LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       449 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      ++++++|++|++++|. +..+|.. ++.+++|++|++++|......|..++.+++|++|+
T Consensus       119 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  177 (597)
T 3oja_B          119 FQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQ  177 (597)
T ss_dssp             TTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEE
T ss_pred             HcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEE
Confidence            4667777777777665 5566554 36666777777776655444444566666666665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.69  E-value=8.4e-17  Score=180.17  Aligned_cols=123  Identities=24%  Similarity=0.284  Sum_probs=78.1

Q ss_pred             CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCccc-c
Q 044550          372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERI-P  446 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p  446 (662)
                      .+..++.+.+..+.+..++.            ..|.+++.|+++   +|.+..+ |..|.++++|++|+|++|.++.+ |
T Consensus        30 ~~~~l~~L~Ls~n~l~~~~~------------~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p   97 (606)
T 3vq2_A           30 IPSSTKNIDLSFNPLKILKS------------YSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSP   97 (606)
T ss_dssp             SCTTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCT
T ss_pred             CCCCcCEEECCCCCcCEeCh------------hhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccCh
Confidence            35678888888777765532            124455555555   3555555 44566677777777777776665 5


Q ss_pred             hhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCcccc-ccCCcCCCCCCCCccC
Q 044550          447 ETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLE  507 (662)
Q Consensus       447 ~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~  507 (662)
                      ..++++++|++|++++|. +..+| ..++++++|++|++++|.... .+|..++++++|++|+
T Consensus        98 ~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  159 (606)
T 3vq2_A           98 GSFSGLTSLENLVAVETK-LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD  159 (606)
T ss_dssp             TSSTTCTTCCEEECTTSC-CCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEE
T ss_pred             hhcCCcccCCEEEccCCc-cccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEE
Confidence            567777777777777766 44444 556677777777777765432 4566677777777765

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.69  E-value=1e-16  Score=173.97  Aligned_cols=224  Identities=23%  Similarity=0.228  Sum_probs=134.6

Q ss_pred             CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccch
Q 044550          372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPE  447 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~  447 (662)
                      .+..++.|.+..+.+..++.            ..|.+++.|+.|   +|.+..+ |..+.++++|++|+|++|.++.+|.
T Consensus        30 ~~~~l~~L~L~~n~l~~~~~------------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   97 (477)
T 2id5_A           30 IPTETRLLDLGKNRIKTLNQ------------DEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL   97 (477)
T ss_dssp             CCTTCSEEECCSSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCT
T ss_pred             CCCCCcEEECCCCccceECH------------hHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCc
Confidence            35677888887777664421            225566666666   4667766 6778889999999999998888876


Q ss_pred             h-hhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550          448 T-LCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL  526 (662)
Q Consensus       448 ~-i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L  526 (662)
                      . ++++++|++|++++|......|..+..+++|++|++++|......|..++.+++|++|++  ..+.........   +
T Consensus        98 ~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~~---l  172 (477)
T 2id5_A           98 GVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL--EKCNLTSIPTEA---L  172 (477)
T ss_dssp             TSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE--ESCCCSSCCHHH---H
T ss_pred             ccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC--CCCcCcccChhH---h
Confidence            4 688899999999988844445667888899999999888765555667888888888863  333332222222   3


Q ss_pred             ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550          527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG  606 (662)
Q Consensus       527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~  606 (662)
                      ..+++|+.|.+.+..       ........+..+.+|+.|+++.+.....         .........+|++|++++|..
T Consensus       173 ~~l~~L~~L~l~~n~-------i~~~~~~~~~~l~~L~~L~l~~~~~~~~---------~~~~~~~~~~L~~L~l~~n~l  236 (477)
T 2id5_A          173 SHLHGLIVLRLRHLN-------INAIRDYSFKRLYRLKVLEISHWPYLDT---------MTPNCLYGLNLTSLSITHCNL  236 (477)
T ss_dssp             TTCTTCCEEEEESCC-------CCEECTTCSCSCTTCCEEEEECCTTCCE---------ECTTTTTTCCCSEEEEESSCC
T ss_pred             cccCCCcEEeCCCCc-------CcEeChhhcccCcccceeeCCCCccccc---------cCcccccCccccEEECcCCcc
Confidence            344445554444321       1111222345556666666665432110         001111223555555555555


Q ss_pred             CCCCc-ccccccCccEEEecCCC
Q 044550          607 NIFPK-WLTSLTNLRELKLSLCV  628 (662)
Q Consensus       607 ~~lP~-~i~~l~~L~~L~L~~~~  628 (662)
                      ..+|. .+..+++|++|+|++|.
T Consensus       237 ~~~~~~~~~~l~~L~~L~Ls~n~  259 (477)
T 2id5_A          237 TAVPYLAVRHLVYLRFLNLSYNP  259 (477)
T ss_dssp             CSCCHHHHTTCTTCCEEECCSSC
T ss_pred             cccCHHHhcCccccCeeECCCCc
Confidence            55542 23455555555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.68  E-value=7.2e-17  Score=185.33  Aligned_cols=234  Identities=17%  Similarity=0.153  Sum_probs=124.7

Q ss_pred             hHhhhcCcccccc---ccccc-ccCcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccc
Q 044550          403 SELFSKLVFLRAL---RNWIR-EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLM  477 (662)
Q Consensus       403 ~~~~~~l~~Lrvl---~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~  477 (662)
                      |..+..++.|+.+   +|.+. .+|..++.+++|++|++++|.+. .+|..++++++|++|++++|.....+|..++.++
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~  514 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE  514 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCC
Confidence            3445555555555   24443 45566666666666666666655 4566666666666666666664445666666666


Q ss_pred             cccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccc---------------------
Q 044550          478 NMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCS---------------------  536 (662)
Q Consensus       478 ~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~---------------------  536 (662)
                      +|++|++++|.....+|..++.+++|+.|++  ..+...+..+..+.....+..+....                     
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L--s~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  592 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDL--NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN  592 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEEC--CSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEEC--CCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccc
Confidence            6666666666655566666666666666653  22222222222222211111110000                     


Q ss_pred             -----------cccCCCCCC--C--CChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEE
Q 044550          537 -----------IEGLKGLSN--V--SHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEI  601 (662)
Q Consensus       537 -----------i~~~~~~~~--~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l  601 (662)
                                 +..+.....  .  ..........+..+.+|+.|+++.+...         ...+..+..+++|+.|++
T Consensus       593 ~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~---------g~ip~~l~~l~~L~~L~L  663 (768)
T 3rgz_A          593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS---------GYIPKEIGSMPYLFILNL  663 (768)
T ss_dssp             EEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB---------SCCCGGGGGCTTCCEEEC
T ss_pred             ccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc---------ccCCHHHhccccCCEEeC
Confidence                       000000000  0  0000111123455677888888776431         112344556778888888


Q ss_pred             eecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc
Q 044550          602 ESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK  647 (662)
Q Consensus       602 ~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~  647 (662)
                      ++|... .+|..++.+++|++|+|++|+....+|. ++.++ |+.|++.
T Consensus       664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls  712 (768)
T 3rgz_A          664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLS  712 (768)
T ss_dssp             CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECC
T ss_pred             cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECc
Confidence            888766 6788888888888888888876555553 45555 5555444

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.68  E-value=1.2e-16  Score=172.30  Aligned_cols=126  Identities=17%  Similarity=0.214  Sum_probs=87.7

Q ss_pred             CCCceeEEEEecCCCCCc-ccccccccccc------------cchHhhhcCcccccc---ccccccc-CcccCCCCccce
Q 044550          372 FGDNVRHLGLNFQRGASF-PMSIHRFNRFS------------ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKY  434 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~-~~~~~~l~~l~------------~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~  434 (662)
                      .+..+++|.+..+.+..+ |..+.++..+.            ..+..|.+++.|+.|   +|.+..+ |..++++++|++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~  107 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEV  107 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCE
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCE
Confidence            467899999998887755 34444443321            123456777777777   4666665 677888888888


Q ss_pred             eeecCCCCcc-cchh--hhcCCCccEEeccCCCCCccC-Ccc-ccccccccEEecCCCccccccCCcCC
Q 044550          435 LNLSELRIER-IPET--LCELYNLQKLDIRGCQYLRGL-PAG-IRKLMNMRSLLNDGTYLLKYMPIGIS  498 (662)
Q Consensus       435 L~L~~~~i~~-lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~-i~~L~~L~~L~l~~~~~~~~~p~~i~  498 (662)
                      |++++|.++. +|..  ++++++|++|++++|. +..+ |.. +.++++|++|++++|......|..++
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~  175 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLL  175 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSG
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhh
Confidence            8888888874 4444  8888888888888887 4444 555 78888888888888876444444443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=166.47  Aligned_cols=224  Identities=18%  Similarity=0.125  Sum_probs=125.5

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchh-
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPET-  448 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-  448 (662)
                      ..++.|.+..+.+..++.            ..+.+++.|+.+   +|.+..+ |..+.++++|++|++++|.++.+|.. 
T Consensus        52 ~~L~~L~l~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  119 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISN------------SDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSW  119 (353)
T ss_dssp             TTCCEEECTTSCCCEECT------------TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHH
T ss_pred             ccCcEEECCCCcCcccCH------------HHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhH
Confidence            456666665555543322            124455555555   4666666 44577788888888888888877765 


Q ss_pred             hhcCCCccEEeccCCCCCccCCc--cccccccccEEecCCCcccccc-CCcCCCCCCCCccCceeecCccCCCCccCccc
Q 044550          449 LCELYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYM-PIGISRLTSLRTLEKFVVGGGVDGGGTCRLES  525 (662)
Q Consensus       449 i~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~-p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~  525 (662)
                      ++++++|++|++++|. +..+|.  .+..+++|++|++++|..+..+ |..++.+++|++|++.  ++......+   ..
T Consensus       120 ~~~l~~L~~L~L~~n~-l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~---~~  193 (353)
T 2z80_A          120 FKPLSSLTFLNLLGNP-YKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID--ASDLQSYEP---KS  193 (353)
T ss_dssp             HTTCTTCSEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE--ETTCCEECT---TT
T ss_pred             hCCCccCCEEECCCCC-CcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC--CCCcCccCH---HH
Confidence            7778888888888876 667766  5777888888888877433444 4567778888877633  333221112   23


Q ss_pred             cccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550          526 LKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR  605 (662)
Q Consensus       526 L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~  605 (662)
                      +..+++|+.|.+.+.    .....   ....+..+++|+.|+++.+........      .+........++.+++.++.
T Consensus       194 l~~l~~L~~L~l~~n----~l~~~---~~~~~~~~~~L~~L~L~~n~l~~~~~~------~l~~~~~~~~l~~l~L~~~~  260 (353)
T 2z80_A          194 LKSIQNVSHLILHMK----QHILL---LEIFVDVTSSVECLELRDTDLDTFHFS------ELSTGETNSLIKKFTFRNVK  260 (353)
T ss_dssp             TTTCSEEEEEEEECS----CSTTH---HHHHHHHTTTEEEEEEESCBCTTCCCC------------CCCCCCEEEEESCB
T ss_pred             HhccccCCeecCCCC----ccccc---hhhhhhhcccccEEECCCCcccccccc------ccccccccchhhcccccccc
Confidence            444455555555543    11221   222233467788888876643111000      01111223344445554443


Q ss_pred             CC-----CCCcccccccCccEEEecCCC
Q 044550          606 GN-----IFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       606 ~~-----~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      ..     .+|.++..+++|++|+|++|.
T Consensus       261 l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          261 ITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             CCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             ccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            22     245555666666666666665

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=99.67  E-value=1.1e-16  Score=179.29  Aligned_cols=141  Identities=16%  Similarity=0.190  Sum_probs=96.3

Q ss_pred             CCceEEEEcccHHHHhhhCCCCeeeCC------CCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHH
Q 044550          193 HGSKIFVTTRNESVARMMGSTNIISIK------QLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKV  266 (662)
Q Consensus       193 ~gSrIivTTR~~~v~~~~~~~~~~~l~------~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~  266 (662)
                      +|||||||||++.++..+....+|.++      +|+++|||+||+++ |+..       ..++..+|   |+|+||||++
T Consensus       264 pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~-~g~~-------~eeL~~eI---CgGLPLALkL  332 (1221)
T 1vt4_I          264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCR-------PQDLPREV---LTTNPRRLSI  332 (1221)
T ss_dssp             SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHH-HCCC-------TTTHHHHH---CCCCHHHHHH
T ss_pred             CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHH-cCCC-------HHHHHHHH---hCCCHHHHHH
Confidence            799999999999999766555577888      99999999999998 4322       12334444   9999999999


Q ss_pred             HHHhhcCCC-CHHHHHHHHhhhhhhhhh---------h-h-----cCcccCCCCchH-----------HHHHHHHHHHHH
Q 044550          267 IGNLLRSKS-TVKEWQRILESEMWKVLE---------I-G-----QGYLNAKEDEEM-----------EMIGEECFNILA  319 (662)
Q Consensus       267 ig~~L~~~~-~~~~w~~~l~~~~~~~~~---------i-a-----eg~i~~~~~~~~-----------~~~~~~~~~~L~  319 (662)
                      +|+.|+.+. ..++|+..-...+....+         . .     .+.+........           ++.++.+|++|+
T Consensus       333 aGs~Lr~k~~s~eeW~~~~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLv  412 (1221)
T 1vt4_I          333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH  412 (1221)
T ss_dssp             HHHHHHHSCSSHHHHHHCSCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCHHHHhcCChhHHHHHHHHHHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            999999885 678897532111111111         0 0     111111111000           235789999999


Q ss_pred             hcCcccccccCCCCCeeeEEcChHHHHHHH
Q 044550          320 ARSFFQEFKKNDDDDIMSCKMHDIVHDFAQ  349 (662)
Q Consensus       320 ~rsli~~~~~~~~~~~~~~~mHdll~dl~~  349 (662)
                      ++|||+..     +...+|+|||++++++.
T Consensus       413 dRSLLq~d-----~~~~rYrMHDLllELr~  437 (1221)
T 1vt4_I          413 KYSLVEKQ-----PKESTISIPSIYLELKV  437 (1221)
T ss_dssp             TSSSSSBC-----SSSSEEBCCCHHHHHHH
T ss_pred             hhCCEEEe-----CCCCEEEehHHHHHHhc
Confidence            99999984     22357999999999663

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.67  E-value=2.5e-16  Score=180.19  Aligned_cols=133  Identities=14%  Similarity=0.242  Sum_probs=97.7

Q ss_pred             CCceeEEEEecCCC-CCcccccccccccc-------------cchHhhhcCc-------ccccc---cccccccCc--cc
Q 044550          373 GDNVRHLGLNFQRG-ASFPMSIHRFNRFS-------------ILSELFSKLV-------FLRAL---RNWIREIPE--NV  426 (662)
Q Consensus       373 ~~~~r~l~l~~~~~-~~~~~~~~~l~~l~-------------~~~~~~~~l~-------~Lrvl---~~~~~~lp~--~i  426 (662)
                      ...++.|.+..+.. ..+|..+.++..|.             .+|..+.++.       .|+.|   +|.+..+|.  .+
T Consensus       490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l  569 (876)
T 4ecn_A          490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL  569 (876)
T ss_dssp             CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred             CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence            46788999988764 46666665554331             1333344333       55555   567778888  88


Q ss_pred             CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccc-ccEEecCCCccccccCCcCCCCCC--C
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMN-MRSLLNDGTYLLKYMPIGISRLTS--L  503 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~-L~~L~l~~~~~~~~~p~~i~~L~~--L  503 (662)
                      +++++|++|+|++|.++.+| .++++++|+.|++++|. +..+|..+..+++ |++|++++|.. ..+|..++.++.  |
T Consensus       570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~-l~~lp~~l~~l~~~L~~L~Ls~N~L-~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQ-IEEIPEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVM  646 (876)
T ss_dssp             TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSC-CSCCCTTSCEECTTCCEEECCSSCC-CSCCSCCCTTCSSCE
T ss_pred             hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCc-cccchHHHhhccccCCEEECcCCCC-CcCchhhhccccCCC
Confidence            88888899999888888888 78888888889888888 6688888888888 88888888875 478877766654  7


Q ss_pred             CccCc
Q 044550          504 RTLEK  508 (662)
Q Consensus       504 ~~L~~  508 (662)
                      +.|++
T Consensus       647 ~~L~L  651 (876)
T 4ecn_A          647 GSVDF  651 (876)
T ss_dssp             EEEEC
T ss_pred             CEEEC
Confidence            77753

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.67  E-value=5.1e-17  Score=182.29  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=34.6

Q ss_pred             CCCCCcEEEEeecCCCCCCcccccccCccEEEecC------CCCCCCCC-CCCCcc-cceeeccc
Q 044550          592 PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSL------CVNCEHLP-PLGKLP-LEKLQLKN  648 (662)
Q Consensus       592 ~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~------~~~~~~lp-~l~~Lp-L~~l~l~~  648 (662)
                      .+++|+.|++++|....+|.++..+++|++|+|++      |.....+| .++.+| |+.|++.+
T Consensus       511 ~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~  575 (636)
T 4eco_A          511 TLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS  575 (636)
T ss_dssp             TCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCS
T ss_pred             cCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCC
Confidence            55667777777776666677777777777777743      33333444 355566 66665554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.66  E-value=1.6e-16  Score=161.80  Aligned_cols=200  Identities=18%  Similarity=0.066  Sum_probs=106.3

Q ss_pred             CcccccccccccccCcc-cCCCCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550          409 LVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN  484 (662)
Q Consensus       409 l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l  484 (662)
                      ++.|.+-++.+..+|.. +.++++|++|++++|.++.+   |..+.++.+|++|++++|. +..+|..+..+++|++|++
T Consensus        30 l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l  108 (306)
T 2z66_A           30 ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF  108 (306)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC
T ss_pred             CCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc-cccChhhcCCCCCCCEEEC
Confidence            33333334555566554 45666666666666666544   4556666666666666665 5566666666666666666


Q ss_pred             CCCccccccC--CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhh-hhhccccccc
Q 044550          485 DGTYLLKYMP--IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDE-VERLQLYNKK  561 (662)
Q Consensus       485 ~~~~~~~~~p--~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~-~~~~~l~~~~  561 (662)
                      ++|.. ..+|  ..+..+++|++|++.  .+......+..   +..+++|+.|.+.+.       .+.. .....+..++
T Consensus       109 ~~n~l-~~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n-------~l~~~~~~~~~~~l~  175 (306)
T 2z66_A          109 QHSNL-KQMSEFSVFLSLRNLIYLDIS--HTHTRVAFNGI---FNGLSSLEVLKMAGN-------SFQENFLPDIFTELR  175 (306)
T ss_dssp             TTSEE-ESSTTTTTTTTCTTCCEEECT--TSCCEECSTTT---TTTCTTCCEEECTTC-------EEGGGEECSCCTTCT
T ss_pred             CCCcc-cccccchhhhhccCCCEEECC--CCcCCccchhh---cccCcCCCEEECCCC-------ccccccchhHHhhCc
Confidence            66654 3333  246666666666422  22211111112   233333444443332       0111 1223345556


Q ss_pred             cCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCC
Q 044550          562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCE  631 (662)
Q Consensus       562 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~  631 (662)
                      +|+.|+++.+...         ......+..+++|++|++++|....+|. .+..+++|++|+|++|....
T Consensus       176 ~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  237 (306)
T 2z66_A          176 NLTFLDLSQCQLE---------QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT  237 (306)
T ss_dssp             TCCEEECTTSCCC---------EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCB
T ss_pred             CCCEEECCCCCcC---------CcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcc
Confidence            6777766655320         0012334556677777777777665554 45567777777777776443

>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}

Probab=99.65  E-value=4.4e-18  Score=143.71  Aligned_cols=65  Identities=26%  Similarity=0.362  Sum_probs=60.1

Q ss_pred             ccccChHHHHHHHHHHHHHHHHHHHHHHhh--hccCcHHHHHHHHHHHhccccccccchhhhhhhhhccc
Q 044550            2 RLVTGVDEEVKKLTINLEAIRAVLEDAKKR--QMQHDKAVTLWLDQLKDSSDDMEDIEAVDDDNALALAP   69 (662)
Q Consensus         2 ~l~~~v~~~~~~l~~~L~~i~a~L~~a~~~--~~~~~~~~~~Wl~~vr~~ayd~eD~~~lD~~~~~~~~~   69 (662)
                      .+++||++|+++|++||++|+|||.+|+++  +.. |++++.|++||||+||||||+  ||+|.++....
T Consensus        19 ~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~-d~~vk~W~~~vrdlaYD~ED~--iD~f~~~~~~~   85 (115)
T 3qfl_A           19 KLHKGVKKNIEDLGKELESMNAALIKIGEVPREQL-DSQDKLWADEVRELSYVIEDV--VDKFLVQVDGI   85 (115)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHC
T ss_pred             HHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccC-CHHHHHHHHHHHHHHHHHHHH--HHHHHHHhccc
Confidence            467899999999999999999999999987  556 999999999999999999999  99999998644

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.65  E-value=2e-16  Score=181.62  Aligned_cols=72  Identities=22%  Similarity=0.238  Sum_probs=57.4

Q ss_pred             CCCCCCCcEEEEeecCCC-CCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc----------------ccc
Q 044550          590 LQPPLNVEELEIESYRGN-IFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK----------------NLK  650 (662)
Q Consensus       590 l~~~~~L~~L~l~~~~~~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~----------------~l~  650 (662)
                      +...++|+.|++++|... .+|.+++.+++|+.|+|++|.....+|. ++.++ |+.|++.                .++
T Consensus       628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~  707 (768)
T 3rgz_A          628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT  707 (768)
T ss_dssp             CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred             hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence            445688999999999876 6799999999999999999998777774 67777 7777664                355


Q ss_pred             CccEeCCcccC
Q 044550          651 SVKRVGNEFLG  661 (662)
Q Consensus       651 ~L~~~~n~~~g  661 (662)
                      .|++.+|.|+|
T Consensus       708 ~L~ls~N~l~g  718 (768)
T 3rgz_A          708 EIDLSNNNLSG  718 (768)
T ss_dssp             EEECCSSEEEE
T ss_pred             EEECcCCcccc
Confidence            66677777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.65  E-value=5.2e-16  Score=159.88  Aligned_cols=197  Identities=24%  Similarity=0.241  Sum_probs=121.7

Q ss_pred             hhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-ccccccccc
Q 044550          406 FSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMR  480 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~  480 (662)
                      |.+++.|+.+   +|.+..+ |..++++++|++|++++|.++.+|..+.  .+|++|++++|. +..+|. .+..+++|+
T Consensus        74 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~-i~~~~~~~~~~l~~L~  150 (332)
T 2ft3_A           74 FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNR-IRKVPKGVFSGLRNMN  150 (332)
T ss_dssp             TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSC-CCCCCSGGGSSCSSCC
T ss_pred             hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCc-cCccCHhHhCCCccCC
Confidence            4455555555   4556555 5567777777777777777777776655  677777777776 555554 366777777


Q ss_pred             EEecCCCccc--cccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc
Q 044550          481 SLLNDGTYLL--KYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY  558 (662)
Q Consensus       481 ~L~l~~~~~~--~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~  558 (662)
                      +|++++|...  ...|..++.+ +|+.|++.  .+.... .+..+.     +.|+.|.+++.       .+.......+.
T Consensus       151 ~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~--~n~l~~-l~~~~~-----~~L~~L~l~~n-------~i~~~~~~~l~  214 (332)
T 2ft3_A          151 CIEMGGNPLENSGFEPGAFDGL-KLNYLRIS--EAKLTG-IPKDLP-----ETLNELHLDHN-------KIQAIELEDLL  214 (332)
T ss_dssp             EEECCSCCCBGGGSCTTSSCSC-CCSCCBCC--SSBCSS-CCSSSC-----SSCSCCBCCSS-------CCCCCCTTSST
T ss_pred             EEECCCCccccCCCCcccccCC-ccCEEECc--CCCCCc-cCcccc-----CCCCEEECCCC-------cCCccCHHHhc
Confidence            7777777542  1344555555 66666532  222211 111111     23444444432       11112223466


Q ss_pred             ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550          559 NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       559 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~  630 (662)
                      .+++|+.|+++.+....         .....+..+++|+.|++++|....+|.++..+++|++|+|++|...
T Consensus       215 ~l~~L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          215 RYSKLYRLGLGHNQIRM---------IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNIT  277 (332)
T ss_dssp             TCTTCSCCBCCSSCCCC---------CCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCC
T ss_pred             CCCCCCEEECCCCcCCc---------CChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCC
Confidence            77888999888764311         0112345678999999999998899999999999999999998743

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.65  E-value=9e-16  Score=157.93  Aligned_cols=217  Identities=19%  Similarity=0.184  Sum_probs=135.9

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccchhh
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      ..++.+.+..+.+..++.            ..|.+++.|+.+   +|.+..+ |..+..+++|++|++++|.++.+|..+
T Consensus        52 ~~l~~L~L~~n~i~~~~~------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~  119 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKD------------GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKM  119 (330)
T ss_dssp             TTCCEEECCSSCCCCBCT------------TTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSC
T ss_pred             CCCeEEECCCCcCCEeCh------------hhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhh
Confidence            455566665555544322            124455555555   4566665 667777778888888877777777765


Q ss_pred             hcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccc--ccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550          450 CELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLK--YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL  526 (662)
Q Consensus       450 ~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L  526 (662)
                      .  ++|++|++++|. +..+|. .+..+++|++|++++|....  ..|..++.+++|+.|++.  .+... ..+..+.  
T Consensus       120 ~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~--~n~l~-~l~~~~~--  191 (330)
T 1xku_A          120 P--KTLQELRVHENE-ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA--DTNIT-TIPQGLP--  191 (330)
T ss_dssp             C--TTCCEEECCSSC-CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC--SSCCC-SCCSSCC--
T ss_pred             c--ccccEEECCCCc-ccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC--CCccc-cCCcccc--
Confidence            4  677788887776 544443 46777788888887775522  445566777777777532  22221 1111111  


Q ss_pred             ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550          527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG  606 (662)
Q Consensus       527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~  606 (662)
                         ..|+.|.+.+.       .+.......+..+++|+.|+++.+....         .....+..+++|++|++++|..
T Consensus       192 ---~~L~~L~l~~n-------~l~~~~~~~~~~l~~L~~L~Ls~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l  252 (330)
T 1xku_A          192 ---PSLTELHLDGN-------KITKVDAASLKGLNNLAKLGLSFNSISA---------VDNGSLANTPHLRELHLNNNKL  252 (330)
T ss_dssp             ---TTCSEEECTTS-------CCCEECTGGGTTCTTCCEEECCSSCCCE---------ECTTTGGGSTTCCEEECCSSCC
T ss_pred             ---ccCCEEECCCC-------cCCccCHHHhcCCCCCCEEECCCCcCce---------eChhhccCCCCCCEEECCCCcC
Confidence               34444444432       1112223456677889999998775310         0112345578999999999998


Q ss_pred             CCCCcccccccCccEEEecCCCC
Q 044550          607 NIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       607 ~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      ..+|.++..+++|++|+|++|..
T Consensus       253 ~~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          253 VKVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             SSCCTTTTTCSSCCEEECCSSCC
T ss_pred             ccCChhhccCCCcCEEECCCCcC
Confidence            89999999999999999999974

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.64  E-value=1.1e-15  Score=157.35  Aligned_cols=218  Identities=20%  Similarity=0.194  Sum_probs=154.2

Q ss_pred             hcCcccccccccccccCc-ccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550          407 SKLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN  484 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l  484 (662)
                      ..++.|.+-+|.+..+|. .+.++++|++|++++|.++.+ |..++++++|++|++++|. +..+|..+.  ++|++|++
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~--~~L~~L~l  128 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKMP--KTLQELRV  128 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSCC--TTCCEEEC
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChhhc--ccccEEEC
Confidence            344445444678888865 688999999999999999987 7889999999999999998 888988765  79999999


Q ss_pred             CCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCC
Q 044550          485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLL  564 (662)
Q Consensus       485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~  564 (662)
                      ++|......+..++.+++|++|++.......   .+.....+..+++|+.|.+.+..    +.....    .+  .++|+
T Consensus       129 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~---~~~~~~~~~~l~~L~~L~l~~n~----l~~l~~----~~--~~~L~  195 (330)
T 1xku_A          129 HENEITKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTN----ITTIPQ----GL--PPSLT  195 (330)
T ss_dssp             CSSCCCBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCSSC----CCSCCS----SC--CTTCS
T ss_pred             CCCcccccCHhHhcCCccccEEECCCCcCCc---cCcChhhccCCCCcCEEECCCCc----cccCCc----cc--cccCC
Confidence            9997644444568899999999743322111   11223345556666666665431    111111    11  26888


Q ss_pred             cEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCCCCC-CCCCcc-c
Q 044550          565 RLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCEHLP-PLGKLP-L  641 (662)
Q Consensus       565 ~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L  641 (662)
                      .|+++.+...         ......+..+++|++|++++|....+|. ++..+++|++|+|++|... .+| .++.+| |
T Consensus       196 ~L~l~~n~l~---------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L  265 (330)
T 1xku_A          196 ELHLDGNKIT---------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  265 (330)
T ss_dssp             EEECTTSCCC---------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             EEECCCCcCC---------ccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCc
Confidence            9988776431         0112456678999999999998776654 7889999999999999755 555 477788 8


Q ss_pred             ceeeccccc
Q 044550          642 EKLQLKNLK  650 (662)
Q Consensus       642 ~~l~l~~l~  650 (662)
                      +.|++.+..
T Consensus       266 ~~L~l~~N~  274 (330)
T 1xku_A          266 QVVYLHNNN  274 (330)
T ss_dssp             CEEECCSSC
T ss_pred             CEEECCCCc
Confidence            888776543

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.64  E-value=4.8e-17  Score=165.98  Aligned_cols=217  Identities=18%  Similarity=0.136  Sum_probs=157.8

Q ss_pred             ccccccccccc---ccCcccCCCCccceeeecC-CCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550          410 VFLRALRNWIR---EIPENVGKLIHLKYLNLSE-LRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN  484 (662)
Q Consensus       410 ~~Lrvl~~~~~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l  484 (662)
                      +.|..-++.+.   .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.....+|..+.++++|++|++
T Consensus        53 ~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L  132 (313)
T 1ogq_A           53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF  132 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC
T ss_pred             EEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC
Confidence            33444456665   5899999999999999995 7776 78999999999999999999844589999999999999999


Q ss_pred             CCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      ++|.....+|..++.+++|++|++.  .+...+..+..   +..+. .|+.|.+.+..       +.......+..+. |
T Consensus       133 s~N~l~~~~p~~~~~l~~L~~L~L~--~N~l~~~~p~~---l~~l~~~L~~L~L~~N~-------l~~~~~~~~~~l~-L  199 (313)
T 1ogq_A          133 SYNALSGTLPPSISSLPNLVGITFD--GNRISGAIPDS---YGSFSKLFTSMTISRNR-------LTGKIPPTFANLN-L  199 (313)
T ss_dssp             CSSEEESCCCGGGGGCTTCCEEECC--SSCCEEECCGG---GGCCCTTCCEEECCSSE-------EEEECCGGGGGCC-C
T ss_pred             CCCccCCcCChHHhcCCCCCeEECc--CCcccCcCCHH---HhhhhhcCcEEECcCCe-------eeccCChHHhCCc-c
Confidence            9998766899999999999999743  33332122333   34444 55555554421       1111222344444 9


Q ss_pred             CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-c
Q 044550          564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-L  641 (662)
Q Consensus       564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L  641 (662)
                      +.|+++.+..         .......+..+++|+.|++++|.....+..+..+++|++|+|++|.....+|. ++.+| |
T Consensus       200 ~~L~Ls~N~l---------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L  270 (313)
T 1ogq_A          200 AFVDLSRNML---------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFL  270 (313)
T ss_dssp             SEEECCSSEE---------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTC
T ss_pred             cEEECcCCcc---------cCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCC
Confidence            9999987642         01134556778999999999998776666688899999999999987655553 66677 7


Q ss_pred             ceeeccc
Q 044550          642 EKLQLKN  648 (662)
Q Consensus       642 ~~l~l~~  648 (662)
                      +.|++.+
T Consensus       271 ~~L~Ls~  277 (313)
T 1ogq_A          271 HSLNVSF  277 (313)
T ss_dssp             CEEECCS
T ss_pred             CEEECcC
Confidence            7666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.64  E-value=3e-15  Score=155.21  Aligned_cols=210  Identities=23%  Similarity=0.238  Sum_probs=123.7

Q ss_pred             hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550          406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL  482 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L  482 (662)
                      +..++.|+.+   +|.+..+| .+..+++|++|++++|.+..+|. +.++++|++|++++|.....+|. +..+++|++|
T Consensus        84 ~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L  160 (347)
T 4fmz_A           84 LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYL  160 (347)
T ss_dssp             GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEE
T ss_pred             hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEE
Confidence            4444444444   34555543 45666666666666666666555 66666666666666653444333 6666666666


Q ss_pred             ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550          483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN  562 (662)
Q Consensus       483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~  562 (662)
                      ++++|.. ..++. ++.+++|++|++.  .+..     ..+..+..++.|+.+.+.+.    .+....     .+..+++
T Consensus       161 ~l~~~~~-~~~~~-~~~l~~L~~L~l~--~n~l-----~~~~~~~~l~~L~~L~l~~n----~l~~~~-----~~~~~~~  222 (347)
T 4fmz_A          161 TVTESKV-KDVTP-IANLTDLYSLSLN--YNQI-----EDISPLASLTSLHYFTAYVN----QITDIT-----PVANMTR  222 (347)
T ss_dssp             ECCSSCC-CCCGG-GGGCTTCSEEECT--TSCC-----CCCGGGGGCTTCCEEECCSS----CCCCCG-----GGGGCTT
T ss_pred             EecCCCc-CCchh-hccCCCCCEEEcc--CCcc-----cccccccCCCccceeecccC----CCCCCc-----hhhcCCc
Confidence            6666643 23332 5556666666422  2211     11222444444444444432    111111     1567788


Q ss_pred             CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-c
Q 044550          563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-L  641 (662)
Q Consensus       563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L  641 (662)
                      |+.|+++.+....           ...+..+++|++|++++|....+| ++..+++|++|++++|.. ..+|.++.+| |
T Consensus       223 L~~L~l~~n~l~~-----------~~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~l~~n~l-~~~~~~~~l~~L  289 (347)
T 4fmz_A          223 LNSLKIGNNKITD-----------LSPLANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQI-SDISVLNNLSQL  289 (347)
T ss_dssp             CCEEECCSSCCCC-----------CGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCC-CCCGGGGGCTTC
T ss_pred             CCEEEccCCccCC-----------CcchhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEEccCCcc-CCChhhcCCCCC
Confidence            8888888765310           112567789999999999887764 678899999999999964 3457777888 8


Q ss_pred             ceeecccc
Q 044550          642 EKLQLKNL  649 (662)
Q Consensus       642 ~~l~l~~l  649 (662)
                      +.|++.++
T Consensus       290 ~~L~L~~n  297 (347)
T 4fmz_A          290 NSLFLNNN  297 (347)
T ss_dssp             SEEECCSS
T ss_pred             CEEECcCC
Confidence            88877654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.64  E-value=8.3e-16  Score=165.42  Aligned_cols=215  Identities=20%  Similarity=0.202  Sum_probs=115.1

Q ss_pred             cCccccccccccccc-CcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEec
Q 044550          408 KLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLN  484 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l  484 (662)
                      +++.|.+-+|.+..+ |..+.++++|++|+|++|.++.++ ..+.++.+|++|++++|. +..+|.. +..+++|++|++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNW-LTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSBCCTTTSSSCTTCCEEEC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCc-CCccChhhhcccCCCCEEEC
Confidence            334444445555555 455666777777777777766654 456677777777777766 5555543 566777777777


Q ss_pred             CCCccccccC-CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          485 DGTYLLKYMP-IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       485 ~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      ++|.. ..+| ..+..+++|+.|++...  .....  .....+..+.+|+.|.+++..    +...     ..+..+.+|
T Consensus       155 ~~N~l-~~~~~~~~~~l~~L~~L~l~~~--~~l~~--i~~~~~~~l~~L~~L~L~~n~----l~~~-----~~~~~l~~L  220 (452)
T 3zyi_A          155 RNNPI-ESIPSYAFNRVPSLMRLDLGEL--KKLEY--ISEGAFEGLFNLKYLNLGMCN----IKDM-----PNLTPLVGL  220 (452)
T ss_dssp             CSCCC-CEECTTTTTTCTTCCEEECCCC--TTCCE--ECTTTTTTCTTCCEEECTTSC----CSSC-----CCCTTCTTC
T ss_pred             CCCCc-ceeCHhHHhcCCcccEEeCCCC--CCccc--cChhhccCCCCCCEEECCCCc----cccc-----ccccccccc
Confidence            77754 3333 35666777776653221  11100  011123334444444443320    1111     124455667


Q ss_pred             CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc
Q 044550          564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP  640 (662)
Q Consensus       564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp  640 (662)
                      +.|+++.+...         ......+..+++|+.|++++|....+ |..+..+++|++|+|++|... .+|.  ++.++
T Consensus       221 ~~L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~  290 (452)
T 3zyi_A          221 EELEMSGNHFP---------EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLR  290 (452)
T ss_dssp             CEEECTTSCCS---------EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-CCCTTSSTTCT
T ss_pred             cEEECcCCcCc---------ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCC-ccChHHhcccc
Confidence            77776655420         01123445566777777777765544 445667777777777777533 2322  34455


Q ss_pred             -cceeecc
Q 044550          641 -LEKLQLK  647 (662)
Q Consensus       641 -L~~l~l~  647 (662)
                       |+.|++.
T Consensus       291 ~L~~L~L~  298 (452)
T 3zyi_A          291 YLVELHLH  298 (452)
T ss_dssp             TCCEEECC
T ss_pred             CCCEEEcc
Confidence             5444443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=3.5e-16  Score=179.03  Aligned_cols=260  Identities=12%  Similarity=0.100  Sum_probs=164.8

Q ss_pred             CCceeEEEEecCCCCC------------------cccccc--cccccc-----------cchHhhhcCcccccc---ccc
Q 044550          373 GDNVRHLGLNFQRGAS------------------FPMSIH--RFNRFS-----------ILSELFSKLVFLRAL---RNW  418 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~------------------~~~~~~--~l~~l~-----------~~~~~~~~l~~Lrvl---~~~  418 (662)
                      ..+++.|.+..+.+..                  +|..+.  ++..|.           .+|..+.+++.|+.|   +|.
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            4678999999998876                  776554  544331           345567777777777   354


Q ss_pred             -cc--ccCcccCCCC-------ccceeeecCCCCcccch--hhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550          419 -IR--EIPENVGKLI-------HLKYLNLSELRIERIPE--TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG  486 (662)
Q Consensus       419 -~~--~lp~~i~~l~-------~Lr~L~L~~~~i~~lp~--~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~  486 (662)
                       +.  .+|..++.+.       +|++|+|++|.++.+|.  .++++++|++|++++|. +..+| .++.+++|++|++++
T Consensus       527 ~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp-~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-VRHLE-AFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSC-CCBCC-CCCTTSEESEEECCS
T ss_pred             CcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCC-cccch-hhcCCCcceEEECcC
Confidence             55  3676665554       88888888888888888  88888888888888887 55888 788888888888888


Q ss_pred             CccccccCCcCCCCCC-CCccCceeecCccCCCCccCccccccCcccCccccccCCCC---CCCC---------Ch----
Q 044550          487 TYLLKYMPIGISRLTS-LRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGL---SNVS---------HV----  549 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~-L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~---~~~~---------~~----  549 (662)
                      |.. ..+|..++.+++ |+.|++.  .+... ..+..+..+.. .+|+.|.+++..-.   +.+.         ++    
T Consensus       605 N~l-~~lp~~l~~l~~~L~~L~Ls--~N~L~-~lp~~~~~~~~-~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~  679 (876)
T 4ecn_A          605 NQI-EEIPEDFCAFTDQVEGLGFS--HNKLK-YIPNIFNAKSV-YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVT  679 (876)
T ss_dssp             SCC-SCCCTTSCEECTTCCEEECC--SSCCC-SCCSCCCTTCS-SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEE
T ss_pred             Ccc-ccchHHHhhccccCCEEECc--CCCCC-cCchhhhcccc-CCCCEEECcCCcCCCccccchhhhccccCCCcCEEE
Confidence            875 478888888887 8888643  23221 22322222211 11333333221100   0000         00    


Q ss_pred             ------hhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhC--------CCCCCCcEEEEeecCCCCCCcccc-
Q 044550          550 ------DEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEAL--------QPPLNVEELEIESYRGNIFPKWLT-  614 (662)
Q Consensus       550 ------~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l--------~~~~~L~~L~l~~~~~~~lP~~i~-  614 (662)
                            ..+....+..+++|+.|+++.+...          .+...+        ..+++|+.|+|++|....+|.++. 
T Consensus       680 Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~----------~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~  749 (876)
T 4ecn_A          680 LSYNEIQKFPTELFATGSPISTIILSNNLMT----------SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA  749 (876)
T ss_dssp             CCSSCCCSCCHHHHHTTCCCSEEECCSCCCS----------CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGST
T ss_pred             ccCCcCCccCHHHHccCCCCCEEECCCCcCC----------ccChHHhccccccccccCCccEEECCCCCCccchHHhhh
Confidence                  0011111124566777777665421          011111        122389999999999888998887 


Q ss_pred             -cccCccEEEecCCCCCCCCC-CCCCcc-cceeeccccc
Q 044550          615 -SLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKNLK  650 (662)
Q Consensus       615 -~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~l~  650 (662)
                       .+++|+.|+|++|.... +| .++.++ |+.|.+.+.+
T Consensus       750 ~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~  787 (876)
T 4ecn_A          750 TTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQR  787 (876)
T ss_dssp             TTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCB
T ss_pred             ccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCC
Confidence             89999999999997654 55 477788 8888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=164.07  Aligned_cols=215  Identities=20%  Similarity=0.195  Sum_probs=118.7

Q ss_pred             CcccccccccccccC-cccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecC
Q 044550          409 LVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLND  485 (662)
Q Consensus       409 l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~  485 (662)
                      ++.|.+-+|.+..++ ..+.++++|++|+|++|.++.++ ..+.++.+|++|++++|. +..+|. .+..+++|++|+++
T Consensus        66 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           66 TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             CSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTSCSCSSCCEEECC
T ss_pred             CcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCc-CCeeCHhHhhccccCceeeCC
Confidence            333433355665553 55667777777777777777664 457777777777777776 555654 46677777777777


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|......+..+..+++|++|++...  ....  ......+..+++|+.|.+.+..    +...     ..+..+.+|+.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~--~~l~--~i~~~~~~~l~~L~~L~L~~n~----l~~~-----~~~~~l~~L~~  211 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGEL--KRLS--YISEGAFEGLSNLRYLNLAMCN----LREI-----PNLTPLIKLDE  211 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCC--TTCC--EECTTTTTTCSSCCEEECTTSC----CSSC-----CCCTTCSSCCE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCC--CCcc--eeCcchhhcccccCeecCCCCc----Cccc-----cccCCCcccCE
Confidence            77653333345667777777753221  1100  0011123334444444444321    1111     12455667777


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc-c
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-L  641 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L  641 (662)
                      |+++.+...         ......+..+++|++|++++|....+ |.++..+++|++|+|++|... .+|.  ++.++ |
T Consensus       212 L~Ls~N~l~---------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L  281 (440)
T 3zyj_A          212 LDLSGNHLS---------AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHL  281 (440)
T ss_dssp             EECTTSCCC---------EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTC
T ss_pred             EECCCCccC---------ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCC-ccChhHhccccCC
Confidence            777665320         00123455567777777777776554 345567777777777777533 2222  34455 5


Q ss_pred             ceeecc
Q 044550          642 EKLQLK  647 (662)
Q Consensus       642 ~~l~l~  647 (662)
                      +.|++.
T Consensus       282 ~~L~L~  287 (440)
T 3zyj_A          282 ERIHLH  287 (440)
T ss_dssp             CEEECC
T ss_pred             CEEEcC
Confidence            544443

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=99.63  E-value=2.1e-15  Score=168.03  Aligned_cols=195  Identities=19%  Similarity=0.240  Sum_probs=137.6

Q ss_pred             CCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------ccch-------------------
Q 044550          142 EGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------EPFF-------------------  185 (662)
Q Consensus       142 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------~~F~-------------------  185 (662)
                      .+.+|||+.+.++|.++|.....    ..++|+|+||||+                 ..|+                   
T Consensus       123 ~~~~vGR~~~l~~L~~~L~~~~~----~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~  198 (591)
T 1z6t_A          123 PVVFVTRKKLVNAIQQKLSKLKG----EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK  198 (591)
T ss_dssp             CSSCCCCHHHHHHHHHHHTTSTT----SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred             CCeecccHHHHHHHHHHHhcccC----CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHHHHH
Confidence            35699999999999999986432    5689999999999                 1231                   


Q ss_pred             --------------------------------------------------hhhhcCCCCceEEEEcccHHHHhhhCCCCe
Q 044550          186 --------------------------------------------------LRLKNGLHGSKIFVTTRNESVARMMGSTNI  215 (662)
Q Consensus       186 --------------------------------------------------~~l~~~~~gSrIivTTR~~~v~~~~~~~~~  215 (662)
                                                                        ..+...++||+||||||+..++..+. ...
T Consensus       199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l~~~~~ilvTsR~~~~~~~~~-~~~  277 (591)
T 1z6t_A          199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAFDSQCQILLTTRDKSVTDSVM-GPK  277 (591)
T ss_dssp             HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTTCSSCEEEEEESCGGGGTTCC-SCE
T ss_pred             HHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHhcCCCeEEEECCCcHHHHhcC-CCc
Confidence                                                              11122357899999999999987754 334


Q ss_pred             eeC---CCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhhhhh---
Q 044550          216 ISI---KQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILESEMW---  289 (662)
Q Consensus       216 ~~l---~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~~~~---  289 (662)
                      |++   ++|+.+++++||...++..     .....+.+.+|+++|+|+||||+.+|+.|+.++  .+|..+++....   
T Consensus       278 ~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~  350 (591)
T 1z6t_A          278 YVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQF  350 (591)
T ss_dssp             EEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCC
T ss_pred             eEeecCCCCCHHHHHHHHHHHhCCC-----cccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHH
Confidence            555   5899999999999998642     123346789999999999999999999998874  357655542110   


Q ss_pred             ---------------hhhh----------------hhcCcccCCCCc----------hHHHHHHHHHHHHHhcCcccccc
Q 044550          290 ---------------KVLE----------------IGQGYLNAKEDE----------EMEMIGEECFNILAARSFFQEFK  328 (662)
Q Consensus       290 ---------------~~~~----------------iaeg~i~~~~~~----------~~~~~~~~~~~~L~~rsli~~~~  328 (662)
                                     ....                +|  .+......          ...+.+..++.+|+++|||+...
T Consensus       351 ~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la--~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~  428 (591)
T 1z6t_A          351 KRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLS--ILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDR  428 (591)
T ss_dssp             CCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGG--GCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEE
T ss_pred             HHhhhccccchHHHHHHHHHHHHhCCHHHHHHHHHcc--ccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEec
Confidence                           0000                21  11111000          01234678999999999998644


Q ss_pred             cCCCCCeeeEEcChHHHHHHHHhhc
Q 044550          329 KNDDDDIMSCKMHDIVHDFAQFVSS  353 (662)
Q Consensus       329 ~~~~~~~~~~~mHdll~dl~~~i~~  353 (662)
                      .   +...+|+||++++++++....
T Consensus       429 ~---~~~~~~~~H~lv~~~~~~~~~  450 (591)
T 1z6t_A          429 N---GKSFRYYLHDLQVDFLTEKNC  450 (591)
T ss_dssp             E---TTEEEEECCHHHHHHHHHHTG
T ss_pred             C---CCccEEEEcHHHHHHHHhhhh
Confidence            2   345689999999999988743

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=1.1e-14  Score=151.05  Aligned_cols=128  Identities=20%  Similarity=0.246  Sum_probs=75.8

Q ss_pred             CCceeEEEEecCCCCCccccccccccc----------ccchHhhhcCcccccc---cccccccCcccCCCCccceeeecC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRF----------SILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSE  439 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l----------~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~  439 (662)
                      ...++.+.+..+.+..++. +..+..+          ..++ .+..++.|+.+   +|.+..+|. +..+++|++|++++
T Consensus        65 ~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~  141 (347)
T 4fmz_A           65 LTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGA  141 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTT
T ss_pred             cCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCchh-hccCCceeEEECCC
Confidence            4566777776666655532 3333322          1223 25566666666   356666655 66777777777777


Q ss_pred             CCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          440 LRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       440 ~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      |.....++.+.++++|++|++++|. +..++. +..+++|++|++++|.. ..++. +..+++|+.|+
T Consensus       142 n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~-~~~l~~L~~L~l~~n~l-~~~~~-~~~l~~L~~L~  205 (347)
T 4fmz_A          142 NHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP-IANLTDLYSLSLNYNQI-EDISP-LASLTSLHYFT  205 (347)
T ss_dssp             CTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG-GGGCTTCSEEECTTSCC-CCCGG-GGGCTTCCEEE
T ss_pred             CCCcccccchhhCCCCcEEEecCCC-cCCchh-hccCCCCCEEEccCCcc-ccccc-ccCCCccceee
Confidence            7544344447777777777777776 555554 66777777777777654 33433 55556666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.62  E-value=6.4e-15  Score=158.15  Aligned_cols=201  Identities=18%  Similarity=0.145  Sum_probs=113.1

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      ...++.+.+..+.+..+| .             +..++.|+.+   +|.+..+|  ++.+++|++|++++|.++.+|  +
T Consensus        41 l~~L~~L~Ls~n~l~~~~-~-------------l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~  102 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDMT-G-------------IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--V  102 (457)
T ss_dssp             HTTCCEEECCSSCCCCCT-T-------------GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred             cCCCCEEEccCCCcccCh-h-------------hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--c
Confidence            356777777777666553 2             3444444444   45666664  677777777777777777765  7


Q ss_pred             hcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC
Q 044550          450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL  529 (662)
Q Consensus       450 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L  529 (662)
                      +++++|++|++++|. +..+|  ++.+++|++|++++|.. ..+|  ++.+++|+.|++.  .+...+    .+ .+..+
T Consensus       103 ~~l~~L~~L~L~~N~-l~~l~--~~~l~~L~~L~l~~N~l-~~l~--l~~l~~L~~L~l~--~n~~~~----~~-~~~~l  169 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNK-LTKLD--VSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCH--LNKKIT----KL-DVTPQ  169 (457)
T ss_dssp             TTCTTCCEEECCSSC-CSCCC--CTTCTTCCEEECTTSCC-SCCC--CTTCTTCCEEECT--TCSCCC----CC-CCTTC
T ss_pred             CCCCcCCEEECCCCc-CCeec--CCCCCcCCEEECCCCcc-ceec--cccCCcCCEEECC--CCCccc----cc-ccccC
Confidence            777777777777776 55565  67777777777777754 3343  6667777777532  221111    11 23344


Q ss_pred             cccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC
Q 044550          530 QLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF  609 (662)
Q Consensus       530 ~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l  609 (662)
                      ++|+.|.+++.    .+...      .+..+++|+.|+++.+....           . .+..+++|+.|++++|....+
T Consensus       170 ~~L~~L~ls~n----~l~~l------~l~~l~~L~~L~l~~N~l~~-----------~-~l~~l~~L~~L~Ls~N~l~~i  227 (457)
T 3bz5_A          170 TQLTTLDCSFN----KITEL------DVSQNKLLNRLNCDTNNITK-----------L-DLNQNIQLTFLDCSSNKLTEI  227 (457)
T ss_dssp             TTCCEEECCSS----CCCCC------CCTTCTTCCEEECCSSCCSC-----------C-CCTTCTTCSEEECCSSCCSCC
T ss_pred             CcCCEEECCCC----cccee------ccccCCCCCEEECcCCcCCe-----------e-ccccCCCCCEEECcCCccccc
Confidence            44444444432    01110      14445556666665543200           0 134445566666666655555


Q ss_pred             CcccccccCccEEEecCCC
Q 044550          610 PKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       610 P~~i~~l~~L~~L~L~~~~  628 (662)
                      |  +..+++|++|++++|.
T Consensus       228 p--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          228 D--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             C--CTTCTTCSEEECCSSC
T ss_pred             C--ccccCCCCEEEeeCCc
Confidence            5  4455566666666554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.62  E-value=8e-16  Score=172.56  Aligned_cols=223  Identities=15%  Similarity=0.155  Sum_probs=113.0

Q ss_pred             hhhcCcccccc---ccccc-ccCcccCCCCccceeeecCCCCcccchhhhcCCC-ccEEeccCCCCCccCCccccccc--
Q 044550          405 LFSKLVFLRAL---RNWIR-EIPENVGKLIHLKYLNLSELRIERIPETLCELYN-LQKLDIRGCQYLRGLPAGIRKLM--  477 (662)
Q Consensus       405 ~~~~l~~Lrvl---~~~~~-~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~-L~~L~l~~~~~l~~lP~~i~~L~--  477 (662)
                      .+.+++.|+.+   +|.+. .+| .++.+++|++|++++|.++.+|..++++++ |++|++++|. +..+|..+..+.  
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~  402 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVS  402 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSS
T ss_pred             hhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccC
Confidence            34455555544   34444 555 555555666666666655555555666655 6666666555 445555544433  


Q ss_pred             cccEEecCCCccccccCCcCC-------CCCCCCccCceeecCccCCCCccCccccccCc--------------------
Q 044550          478 NMRSLLNDGTYLLKYMPIGIS-------RLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ--------------------  530 (662)
Q Consensus       478 ~L~~L~l~~~~~~~~~p~~i~-------~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~--------------------  530 (662)
                      +|++|++++|......|..++       .+++|+.|++.  .+.........+..+.+|+                    
T Consensus       403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls--~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~  480 (636)
T 4eco_A          403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS--NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDE  480 (636)
T ss_dssp             CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECC--SSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEET
T ss_pred             ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECc--CCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccc
Confidence            555555555555444454444       44455555422  1211100000111111111                    


Q ss_pred             --------ccCccccccCCCCCCCCChhhhhhcccc--ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEE
Q 044550          531 --------LLRKCSIEGLKGLSNVSHVDEVERLQLY--NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELE  600 (662)
Q Consensus       531 --------~L~~L~i~~~~~~~~~~~~~~~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~  600 (662)
                              +|+.|.+++.    .+.   . ....+.  .+++|+.|+++.+...          .++..+..+++|+.|+
T Consensus       481 ~~~~~~l~~L~~L~Ls~N----~l~---~-lp~~~~~~~l~~L~~L~Ls~N~l~----------~ip~~~~~l~~L~~L~  542 (636)
T 4eco_A          481 NENFKNTYLLTSIDLRFN----KLT---K-LSDDFRATTLPYLVGIDLSYNSFS----------KFPTQPLNSSTLKGFG  542 (636)
T ss_dssp             TEECTTGGGCCEEECCSS----CCC---B-CCGGGSTTTCTTCCEEECCSSCCS----------SCCCGGGGCSSCCEEE
T ss_pred             cccccccCCccEEECcCC----cCC---c-cChhhhhccCCCcCEEECCCCCCC----------CcChhhhcCCCCCEEE
Confidence                    2222222221    000   0 111222  5566777777665421          1233445578888888


Q ss_pred             Eee------cC-CCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecccccC
Q 044550          601 IES------YR-GNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKS  651 (662)
Q Consensus       601 l~~------~~-~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~~  651 (662)
                      +++      |. ...+|.++..+++|++|+|++|.. ..+|.- -.| |+.|++.+.+-
T Consensus       543 Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~l  599 (636)
T 4eco_A          543 IRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNPN  599 (636)
T ss_dssp             CCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCTT
T ss_pred             CCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCCC
Confidence            854      33 345788888888888888888875 555542 225 66666665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.62  E-value=2e-15  Score=169.00  Aligned_cols=132  Identities=14%  Similarity=0.100  Sum_probs=64.3

Q ss_pred             CCCceeEEEEecCCCCCcc-cccccccccc-----------cchHhhhcCcccccc---ccccccc-CcccCCCCcccee
Q 044550          372 FGDNVRHLGLNFQRGASFP-MSIHRFNRFS-----------ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYL  435 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~-~~~~~l~~l~-----------~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L  435 (662)
                      .+..++++.+..+.+..++ ..+.+++.|.           ..+..|.+++.|+.+   +|.+..+ |..++++++|++|
T Consensus        31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  110 (606)
T 3t6q_A           31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL  110 (606)
T ss_dssp             SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE
T ss_pred             CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe
Confidence            4567888988888877552 2333322210           123334444444444   2344333 4445555555555


Q ss_pred             eecCCCCccc-chhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550          436 NLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR  504 (662)
Q Consensus       436 ~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~  504 (662)
                      ++++|.++.+ |..++++++|++|++++|. +..++ ..+..+++|++|++++|......|..++.+++|+
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  180 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNH-ISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQAT  180 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSC-CCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCc-ccccCcccccCCcccCEEEcccCcccccChhhhhhhcccc
Confidence            5555555544 3445555555555555554 33321 1223355555555555544322233444555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=9.9e-15  Score=157.66  Aligned_cols=97  Identities=29%  Similarity=0.417  Sum_probs=46.8

Q ss_pred             hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccch--------------------hhhcCCCccEEeccC
Q 044550          406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPE--------------------TLCELYNLQKLDIRG  462 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~--------------------~i~~L~~L~~L~l~~  462 (662)
                      +.+++.|+.+   +|.+..+|. +..+++|++|++++|.+..+|.                    .++++++|+.|++++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~  186 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS  186 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCS
T ss_pred             hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcC
Confidence            4444444444   344444443 5555555555555555444432                    144445555555555


Q ss_pred             CCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          463 CQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       463 ~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      |. +..++. +..+++|++|++++|... .++. ++.+++|++|+
T Consensus       187 n~-l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-~~~l~~L~~L~  227 (466)
T 1o6v_A          187 NK-VSDISV-LAKLTNLESLIATNNQIS-DITP-LGILTNLDELS  227 (466)
T ss_dssp             SC-CCCCGG-GGGCTTCSEEECCSSCCC-CCGG-GGGCTTCCEEE
T ss_pred             Cc-CCCChh-hccCCCCCEEEecCCccc-cccc-ccccCCCCEEE
Confidence            54 444432 455555555555555432 2222 44455555554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.61  E-value=5.5e-16  Score=163.48  Aligned_cols=101  Identities=22%  Similarity=0.299  Sum_probs=83.1

Q ss_pred             hcCcccccccccccccCcc-cCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550          407 SKLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~  483 (662)
                      .+++.|.+-++.+..+|.. +..+++|++|++++|.++.+|+ .++++++|++|++++|. +..+ |..++.+++|++|+
T Consensus        45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEE
Confidence            4444444446788889876 4779999999999999998875 89999999999999998 6555 55689999999999


Q ss_pred             cCCCccccccCCc-CCCCCCCCccCce
Q 044550          484 NDGTYLLKYMPIG-ISRLTSLRTLEKF  509 (662)
Q Consensus       484 l~~~~~~~~~p~~-i~~L~~L~~L~~~  509 (662)
                      +++|.. ..+|.. ++.+++|++|++.
T Consensus       124 L~~n~l-~~l~~~~~~~l~~L~~L~L~  149 (390)
T 3o6n_A          124 LERNDL-SSLPRGIFHNTPKLTTLSMS  149 (390)
T ss_dssp             CCSSCC-CCCCTTTTTTCTTCCEEECC
T ss_pred             CCCCcc-CcCCHHHhcCCCCCcEEECC
Confidence            999976 677766 5899999999743

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.61  E-value=4.8e-15  Score=160.09  Aligned_cols=244  Identities=25%  Similarity=0.273  Sum_probs=135.6

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC  450 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~  450 (662)
                      ..++.+.+..+.+..+|.              +..++.|+++   +|.+..+|+ ++++++|++|++++|.+..+|+ ++
T Consensus        46 ~~l~~L~l~~~~i~~l~~--------------~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~  109 (466)
T 1o6v_A           46 DQVTTLQADRLGIKSIDG--------------VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LA  109 (466)
T ss_dssp             HTCCEEECCSSCCCCCTT--------------GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GT
T ss_pred             ccccEEecCCCCCccCcc--------------hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hc
Confidence            457777777666654431              2333344444   455666655 6667777777777777666665 66


Q ss_pred             cCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550          451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ  530 (662)
Q Consensus       451 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~  530 (662)
                      ++++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|.+.   +..     ..+..+.+++
T Consensus       110 ~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~l~~n~l-~~~~-~~~~l~~L~~L~l~---~~~-----~~~~~~~~l~  177 (466)
T 1o6v_A          110 NLTNLTGLTLFNNQ-ITDIDP-LKNLTNLNRLELSSNTI-SDIS-ALSGLTSLQQLSFG---NQV-----TDLKPLANLT  177 (466)
T ss_dssp             TCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEEEEEEEE-CCCG-GGTTCTTCSEEEEE---ESC-----CCCGGGTTCT
T ss_pred             CCCCCCEEECCCCC-CCCChH-HcCCCCCCEEECCCCcc-CCCh-hhccCCcccEeecC---Ccc-----cCchhhccCC
Confidence            77777777777665 555554 66677777777766653 3333 35566666666431   111     0111233334


Q ss_pred             ccCccccccCCCCCCCC----------------ChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCC
Q 044550          531 LLRKCSIEGLKGLSNVS----------------HVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPL  594 (662)
Q Consensus       531 ~L~~L~i~~~~~~~~~~----------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~  594 (662)
                      +|+.|.+++..- ..+.                .....  ..+..+++|+.|+++.+...           ....+..++
T Consensus       178 ~L~~L~l~~n~l-~~~~~l~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~-----------~~~~l~~l~  243 (466)
T 1o6v_A          178 TLERLDISSNKV-SDISVLAKLTNLESLIATNNQISDI--TPLGILTNLDELSLNGNQLK-----------DIGTLASLT  243 (466)
T ss_dssp             TCCEEECCSSCC-CCCGGGGGCTTCSEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCC-----------CCGGGGGCT
T ss_pred             CCCEEECcCCcC-CCChhhccCCCCCEEEecCCccccc--ccccccCCCCEEECCCCCcc-----------cchhhhcCC
Confidence            444443333210 0000                00000  01334556666666554320           012345567


Q ss_pred             CCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccc--------------ccCccEeCCcc
Q 044550          595 NVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN--------------LKSVKRVGNEF  659 (662)
Q Consensus       595 ~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~--------------l~~L~~~~n~~  659 (662)
                      +|+.|++++|....+|. +..+++|++|++++|... .+|.++.++ |+.|++.+              ++.|++.+|.+
T Consensus       244 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l  321 (466)
T 1o6v_A          244 NLTDLDLANNQISNLAP-LSGLTKLTELKLGANQIS-NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI  321 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCccccchh-hhcCCCCCEEECCCCccC-ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcC
Confidence            88888888887766654 667888888888888644 344477777 77777643              44555666666


Q ss_pred             cC
Q 044550          660 LG  661 (662)
Q Consensus       660 ~g  661 (662)
                      .|
T Consensus       322 ~~  323 (466)
T 1o6v_A          322 SD  323 (466)
T ss_dssp             SC
T ss_pred             CC
Confidence            54

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.61  E-value=2.5e-15  Score=156.12  Aligned_cols=232  Identities=16%  Similarity=0.100  Sum_probs=160.4

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcc-cCCCCccceeeecCCCCcccch-
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPEN-VGKLIHLKYLNLSELRIERIPE-  447 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-  447 (662)
                      ...++.|.+..+.+..++            +..|.+++.|+.+   +|.+..+|.. +.++++|++|++++|.++.+|. 
T Consensus        75 l~~L~~L~L~~n~l~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~  142 (353)
T 2z80_A           75 CVNLQALVLTSNGINTIE------------EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGET  142 (353)
T ss_dssp             CTTCCEEECTTSCCCEEC------------TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSS
T ss_pred             CCCCCEEECCCCccCccC------------HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCch
Confidence            356777777766665432            2225566666666   5788888876 8899999999999999999987 


Q ss_pred             -hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccc
Q 044550          448 -TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLES  525 (662)
Q Consensus       448 -~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~  525 (662)
                       .++++++|++|++++|..+..+ |..+..+++|++|++++|......|..++.+++|++|++.  .+... ..+..  .
T Consensus       143 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~--~n~l~-~~~~~--~  217 (353)
T 2z80_A          143 SLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILH--MKQHI-LLLEI--F  217 (353)
T ss_dssp             CSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE--CSCST-THHHH--H
T ss_pred             hhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCC--CCccc-cchhh--h
Confidence             7899999999999999656666 4678999999999999998766668899999999999743  33321 11111  1


Q ss_pred             cccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550          526 LKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR  605 (662)
Q Consensus       526 L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~  605 (662)
                      ...+++|+.|.+++..    +................++.+++.....     .......+.+.+..+++|+.|++++|.
T Consensus       218 ~~~~~~L~~L~L~~n~----l~~~~~~~l~~~~~~~~l~~l~L~~~~l-----~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          218 VDVTSSVECLELRDTD----LDTFHFSELSTGETNSLIKKFTFRNVKI-----TDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             HHHTTTEEEEEEESCB----CTTCCCC------CCCCCCEEEEESCBC-----CHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             hhhcccccEEECCCCc----cccccccccccccccchhhccccccccc-----cCcchhhhHHHHhcccCCCEEECCCCC
Confidence            2234455555555431    1110000011123345677777765532     112223445567788999999999999


Q ss_pred             CCCCCccc-ccccCccEEEecCCCCC
Q 044550          606 GNIFPKWL-TSLTNLRELKLSLCVNC  630 (662)
Q Consensus       606 ~~~lP~~i-~~l~~L~~L~L~~~~~~  630 (662)
                      ...+|.++ ..+++|++|+|++|+..
T Consensus       289 l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          289 LKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            99999986 69999999999999743

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.61  E-value=5.2e-15  Score=162.34  Aligned_cols=90  Identities=17%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             CCceeEEEEecCCCCCcc-cccccc---cccc--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550          373 GDNVRHLGLNFQRGASFP-MSIHRF---NRFS--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL  437 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~-~~~~~l---~~l~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L  437 (662)
                      ...++++.+..+.+..++ ..+..+   +.|.        ..+..|.+++.|+++   +|.+..+|..  .+++|++|++
T Consensus        20 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L   97 (520)
T 2z7x_B           20 SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDL   97 (520)
T ss_dssp             CTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEEC
T ss_pred             cccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEec
Confidence            467888888888877654 334333   3321        235567777777777   4677778776  7888888888


Q ss_pred             cCCCCcc--cchhhhcCCCccEEeccCCC
Q 044550          438 SELRIER--IPETLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       438 ~~~~i~~--lp~~i~~L~~L~~L~l~~~~  464 (662)
                      ++|.++.  +|..++++++|++|++++|.
T Consensus        98 ~~N~l~~~~~p~~~~~l~~L~~L~L~~n~  126 (520)
T 2z7x_B           98 SFNAFDALPICKEFGNMSQLKFLGLSTTH  126 (520)
T ss_dssp             CSSCCSSCCCCGGGGGCTTCCEEEEEESS
T ss_pred             cCCccccccchhhhccCCcceEEEecCcc
Confidence            8888875  56788888888888887765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.61  E-value=9.7e-16  Score=165.14  Aligned_cols=107  Identities=20%  Similarity=0.242  Sum_probs=84.1

Q ss_pred             chHhhhcCcccccc---ccccc-cc-CcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc--c
Q 044550          402 LSELFSKLVFLRAL---RNWIR-EI-PENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG--I  473 (662)
Q Consensus       402 ~~~~~~~l~~Lrvl---~~~~~-~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~--i  473 (662)
                      .+..|.+++.|+.+   ++.+. .+ |..+..+++|++|+|++|.++.+ |..++++++|++|++++|......|..  +
T Consensus        46 ~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  125 (455)
T 3v47_A           46 NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF  125 (455)
T ss_dssp             CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTT
T ss_pred             ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccc
Confidence            35557888888887   35553 44 56788999999999999998876 778999999999999999833334554  8


Q ss_pred             cccccccEEecCCCccccccCCc-CCCCCCCCccCc
Q 044550          474 RKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLEK  508 (662)
Q Consensus       474 ~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~~  508 (662)
                      ..+++|++|++++|......|.. ++.+++|++|++
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L  161 (455)
T 3v47_A          126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL  161 (455)
T ss_dssp             TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred             cCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence            89999999999999875555655 788999999874

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.60  E-value=5e-15  Score=148.95  Aligned_cols=202  Identities=20%  Similarity=0.144  Sum_probs=132.9

Q ss_pred             hcCcccccccccccccC-cccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550          407 SKLVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~  483 (662)
                      .+++.|.+-++.+..+| ..+..+++|++|++++|.++.+ |..+.++++|++|++++|..+..+ |..+..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~  111 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence            34444444456777765 4577888888888888888877 667888888888888888645555 66788888888888


Q ss_pred             cCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          484 NDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       484 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      +++|......|..++.+++|++|++.  .+......+..   +..+++|+.|.+.+.       .+.......+..+++|
T Consensus       112 l~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n-------~l~~~~~~~~~~l~~L  179 (285)
T 1ozn_A          112 LDRCGLQELGPGLFRGLAALQYLYLQ--DNALQALPDDT---FRDLGNLTHLFLHGN-------RISSVPERAFRGLHSL  179 (285)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECC--SSCCCCCCTTT---TTTCTTCCEEECCSS-------CCCEECTTTTTTCTTC
T ss_pred             CCCCcCCEECHhHhhCCcCCCEEECC--CCcccccCHhH---hccCCCccEEECCCC-------cccccCHHHhcCcccc
Confidence            88887654446667888888888632  33332222222   334444555555432       1112222235567788


Q ss_pred             CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550          564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~  629 (662)
                      +.|+++.+...         ......+..+++|+.|++++|....+|. ++..+++|++|+|++|..
T Consensus       180 ~~L~l~~n~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~  237 (285)
T 1ozn_A          180 DRLLLHQNRVA---------HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (285)
T ss_dssp             CEEECCSSCCC---------EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             CEEECCCCccc---------ccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCc
Confidence            88888766431         0113345667888999998888777764 477888899999988863

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.60  E-value=2.6e-15  Score=168.05  Aligned_cols=122  Identities=22%  Similarity=0.255  Sum_probs=82.0

Q ss_pred             ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCccc-chhhh
Q 044550          375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLC  450 (662)
Q Consensus       375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~  450 (662)
                      .++.+.+..+.+..++..            .|..++.|+.+   +|.+..+|..++.+++|++|++++|.+..+ |..++
T Consensus       255 ~L~~L~l~~n~l~~~~~~------------~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~  322 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSN------------TFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISAS  322 (606)
T ss_dssp             EEEEEECTTCCCSSCCTT------------TTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGG
T ss_pred             ceeEEEeecCccCccCHH------------HhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhh
Confidence            566666666655544322            24445555555   467777787788888888888888887766 45777


Q ss_pred             cCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc--CCcCCCCCCCCccCc
Q 044550          451 ELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM--PIGISRLTSLRTLEK  508 (662)
Q Consensus       451 ~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~--p~~i~~L~~L~~L~~  508 (662)
                      ++++|++|++++|.....+|.. +..+++|++|++++|......  |..++.+++|++|++
T Consensus       323 ~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l  383 (606)
T 3t6q_A          323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNL  383 (606)
T ss_dssp             GCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEEC
T ss_pred             ccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEEC
Confidence            8888888888877744455553 677778888888777653332  566777777777763

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.60  E-value=6.8e-15  Score=162.94  Aligned_cols=90  Identities=18%  Similarity=0.191  Sum_probs=63.3

Q ss_pred             CCceeEEEEecCCCCCcc-ccccccccc---c--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550          373 GDNVRHLGLNFQRGASFP-MSIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL  437 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L  437 (662)
                      +..++.|.+..+.+..++ ..+.++..+   .        ..+..|.+++.|+.|   +|.+..+|..  .+++|++|++
T Consensus        51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L  128 (562)
T 3a79_B           51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDL  128 (562)
T ss_dssp             CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEEC
T ss_pred             CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEEC
Confidence            467888888888877664 344443332   1        234556677777776   4677778776  7888888888


Q ss_pred             cCCCCcccc--hhhhcCCCccEEeccCCC
Q 044550          438 SELRIERIP--ETLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       438 ~~~~i~~lp--~~i~~L~~L~~L~l~~~~  464 (662)
                      ++|.++.+|  ..++++++|++|++++|.
T Consensus       129 s~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          129 SFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             CSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CCCCccccCchHhhcccCcccEEecCCCc
Confidence            888887654  678888888888888775

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.60  E-value=5.8e-15  Score=163.13  Aligned_cols=135  Identities=21%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             CCceeEEEEecCCCCCcc-ccccccccc---c--------cchHhhhcCcccccc---cccccccCcc-cCCCCccceee
Q 044550          373 GDNVRHLGLNFQRGASFP-MSIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPEN-VGKLIHLKYLN  436 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~-i~~l~~Lr~L~  436 (662)
                      ...++.+.+..+.+..++ ..+.+++.+   .        ..+..|.+++.|+++   +|.+..+|+. ++++++|++|+
T Consensus        25 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           25 TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred             CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence            467889998888776542 333333222   1        223345556666665   3556555544 66677777777


Q ss_pred             ecCCCCcc--cchhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          437 LSELRIER--IPETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       437 L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      +++|.++.  +|..++++++|++|++++|..+..+| ..+..+++|++|++++|......|..++.+++|++|+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  178 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT  178 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence            77776663  35566677777777777666455555 3566677777777776665555666666655555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.60  E-value=2.3e-15  Score=163.31  Aligned_cols=219  Identities=20%  Similarity=0.252  Sum_probs=158.5

Q ss_pred             hcCccccccccccccc-CcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550          407 SKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~  483 (662)
                      ..++.|..-+|.+..+ |..+.++++|++|+|++|.++.+ |..++++++|++|++++|. +..+|.. +.++++|++|+
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~  110 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLD  110 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEE
Confidence            3444455446788877 56789999999999999999977 7789999999999999998 7788764 68999999999


Q ss_pred             cCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          484 NDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       484 l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      +++|......|..++.+++|+.|++  ..+......+.   .+..+++|+.|.+.+.    .+.   ......+..+++|
T Consensus       111 Ls~n~i~~~~~~~~~~l~~L~~L~l--~~n~l~~~~~~---~~~~l~~L~~L~l~~n----~l~---~~~~~~l~~l~~L  178 (477)
T 2id5_A          111 ISENKIVILLDYMFQDLYNLKSLEV--GDNDLVYISHR---AFSGLNSLEQLTLEKC----NLT---SIPTEALSHLHGL  178 (477)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEEE--CCTTCCEECTT---SSTTCTTCCEEEEESC----CCS---SCCHHHHTTCTTC
T ss_pred             CCCCccccCChhHccccccCCEEEC--CCCccceeChh---hccCCCCCCEEECCCC----cCc---ccChhHhcccCCC
Confidence            9999876667788999999999974  33333211222   3445556666666653    111   2223346678899


Q ss_pred             CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC-CCCCcccccccCccEEEecCCCCCCCCC--CCCCcc
Q 044550          564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG-NIFPKWLTSLTNLRELKLSLCVNCEHLP--PLGKLP  640 (662)
Q Consensus       564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~~lP~~i~~l~~L~~L~L~~~~~~~~lp--~l~~Lp  640 (662)
                      +.|+++.+....         .....+..+++|+.|++++|.. ..+|.......+|++|+|++|... .+|  .++.++
T Consensus       179 ~~L~l~~n~i~~---------~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~  248 (477)
T 2id5_A          179 IVLRLRHLNINA---------IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLV  248 (477)
T ss_dssp             CEEEEESCCCCE---------ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCC-SCCHHHHTTCT
T ss_pred             cEEeCCCCcCcE---------eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccc-ccCHHHhcCcc
Confidence            999998875310         1123456778999999999763 446767667779999999999743 555  356677


Q ss_pred             -cceeeccc
Q 044550          641 -LEKLQLKN  648 (662)
Q Consensus       641 -L~~l~l~~  648 (662)
                       |+.|++.+
T Consensus       249 ~L~~L~Ls~  257 (477)
T 2id5_A          249 YLRFLNLSY  257 (477)
T ss_dssp             TCCEEECCS
T ss_pred             ccCeeECCC
Confidence             77776654

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.60  E-value=7.5e-15  Score=170.36  Aligned_cols=82  Identities=18%  Similarity=0.116  Sum_probs=50.4

Q ss_pred             ccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-
Q 044550          557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-  634 (662)
Q Consensus       557 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-  634 (662)
                      +..+++|+.|+++.+...         ......+..+++|++|++++|....+ |.++..+++|++|+|++|... .++ 
T Consensus       286 ~~~l~~L~~L~L~~n~i~---------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~  355 (844)
T 3j0a_A          286 FETLKDLKVLNLAYNKIN---------KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-IIQD  355 (844)
T ss_dssp             SSSCCCCCEEEEESCCCC---------EECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-CCCS
T ss_pred             hhcCCCCCEEECCCCcCC---------CCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-ccCh
Confidence            344566666666655320         01123455667888888888876555 667778888888888888643 333 


Q ss_pred             -CCCCcc-cceeeccc
Q 044550          635 -PLGKLP-LEKLQLKN  648 (662)
Q Consensus       635 -~l~~Lp-L~~l~l~~  648 (662)
                       .++.+| |+.|++.+
T Consensus       356 ~~~~~l~~L~~L~Ls~  371 (844)
T 3j0a_A          356 QTFKFLEKLQTLDLRD  371 (844)
T ss_dssp             SCSCSCCCCCEEEEET
T ss_pred             hhhcCCCCCCEEECCC
Confidence             256667 77766653

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=6.7e-16  Score=157.09  Aligned_cols=209  Identities=15%  Similarity=0.099  Sum_probs=151.1

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccC---CccccccccccEEecCCCcccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLK  491 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~  491 (662)
                      ++.++.+|..+.  .+|++|++++|.++.+|.. +.++++|++|++++|. +..+   |..+..+++|++|++++|.. .
T Consensus        16 ~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i-~   91 (306)
T 2z66_A           16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGV-I   91 (306)
T ss_dssp             SSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSE-E
T ss_pred             CCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEECCCCcc-c
Confidence            456778887664  6899999999999999886 6899999999999998 6544   67778899999999999975 6


Q ss_pred             ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEec
Q 044550          492 YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFG  571 (662)
Q Consensus       492 ~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~  571 (662)
                      .+|..+..+++|++|++.  .+......  ....+..+++|+.|.+.+..       ........+..+++|+.|+++.+
T Consensus        92 ~l~~~~~~l~~L~~L~l~--~n~l~~~~--~~~~~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n  160 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQ--HSNLKQMS--EFSVFLSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGN  160 (306)
T ss_dssp             EEEEEEETCTTCCEEECT--TSEEESST--TTTTTTTCTTCCEEECTTSC-------CEECSTTTTTTCTTCCEEECTTC
T ss_pred             cChhhcCCCCCCCEEECC--CCcccccc--cchhhhhccCCCEEECCCCc-------CCccchhhcccCcCCCEEECCCC
Confidence            788889999999999743  23221111  11335556666666665531       11222334667789999999765


Q ss_pred             CCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeecc
Q 044550          572 GDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLK  647 (662)
Q Consensus       572 ~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~  647 (662)
                      ..        ........+..+++|++|++++|....+ |.++..+++|++|+|++|......+ .++.+| |+.|++.
T Consensus       161 ~l--------~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  231 (306)
T 2z66_A          161 SF--------QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYS  231 (306)
T ss_dssp             EE--------GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECT
T ss_pred             cc--------ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECC
Confidence            42        1112344567789999999999987766 6788899999999999997543222 356677 7777664

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.59  E-value=3e-15  Score=150.59  Aligned_cols=207  Identities=20%  Similarity=0.183  Sum_probs=147.8

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCcccccc-
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYM-  493 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~-  493 (662)
                      +.+..+|..+  .++|++|++++|.++.+|. .+.++++|++|++++|. +..+ |..+..+++|++|++++|..+..+ 
T Consensus        21 ~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~   97 (285)
T 1ozn_A           21 QGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVD   97 (285)
T ss_dssp             SCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCC
T ss_pred             CCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccC
Confidence            4567777655  4799999999999998875 69999999999999998 5555 778999999999999999744555 


Q ss_pred             CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550          494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD  573 (662)
Q Consensus       494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  573 (662)
                      |..++.+++|++|++  .++......+..   +..+++|+.|.+.+..       +.......+..+++|+.|+++.+..
T Consensus        98 ~~~~~~l~~L~~L~l--~~n~l~~~~~~~---~~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l  165 (285)
T 1ozn_A           98 PATFHGLGRLHTLHL--DRCGLQELGPGL---FRGLAALQYLYLQDNA-------LQALPDDTFRDLGNLTHLFLHGNRI  165 (285)
T ss_dssp             TTTTTTCTTCCEEEC--TTSCCCCCCTTT---TTTCTTCCEEECCSSC-------CCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             HHHhcCCcCCCEEEC--CCCcCCEECHhH---hhCCcCCCEEECCCCc-------ccccCHhHhccCCCccEEECCCCcc
Confidence            678999999999974  333332222333   4445556665555431       1112223466788999999987753


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccc
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKN  648 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~  648 (662)
                      ..         .....+..+++|+.|++++|....+ |.++..+++|++|+|++|.... +|.  ++.+| |+.+++.+
T Consensus       166 ~~---------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~  234 (285)
T 1ozn_A          166 SS---------VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLND  234 (285)
T ss_dssp             CE---------ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCS
T ss_pred             cc---------cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccC
Confidence            10         0112356679999999999987765 7888899999999999997443 332  55566 66555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.59  E-value=8.9e-16  Score=156.55  Aligned_cols=226  Identities=20%  Similarity=0.188  Sum_probs=152.5

Q ss_pred             Cccccccccccc--ccCcccC-------CCCccceeeecCCCCc-ccchhh--hcCCCccEEeccCCCCCccCCcccccc
Q 044550          409 LVFLRALRNWIR--EIPENVG-------KLIHLKYLNLSELRIE-RIPETL--CELYNLQKLDIRGCQYLRGLPAGIRKL  476 (662)
Q Consensus       409 l~~Lrvl~~~~~--~lp~~i~-------~l~~Lr~L~L~~~~i~-~lp~~i--~~L~~L~~L~l~~~~~l~~lP~~i~~L  476 (662)
                      ++.|.+-++.+.  .+|..+.       .+.+|++|++++|.++ .+|..+  +++++|++|++++|. +..+|..++.+
T Consensus        65 L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l  143 (312)
T 1wwl_A           65 IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAEL  143 (312)
T ss_dssp             HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHH
T ss_pred             HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHH
Confidence            444444455553  3555554       6889999999999987 678876  889999999999988 66668878877


Q ss_pred             -----ccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc--ccCcccCccccccCCCCCCCCCh
Q 044550          477 -----MNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL--KNLQLLRKCSIEGLKGLSNVSHV  549 (662)
Q Consensus       477 -----~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L--~~L~~L~~L~i~~~~~~~~~~~~  549 (662)
                           ++|++|++++|......|..++.+++|++|++.  .+...+. ...+..+  ..+++|+.|.+.+.    .+...
T Consensus       144 ~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~-~~~~~~~~~~~l~~L~~L~L~~N----~l~~~  216 (312)
T 1wwl_A          144 QQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS--DNPELGE-RGLISALCPLKFPTLQVLALRNA----GMETP  216 (312)
T ss_dssp             HTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC--SCTTCHH-HHHHHHSCTTSCTTCCEEECTTS----CCCCH
T ss_pred             HHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC--CCCcCcc-hHHHHHHHhccCCCCCEEECCCC----cCcch
Confidence                 899999999998755555788899999998743  3322100 0011122  45566666666653    22333


Q ss_pred             hhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          550 DEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       550 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      .......+..+++|+.|+++.+......        ....+..+++|+.|++++|....+|.++.  ++|++|+|++|..
T Consensus       217 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~--------~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l  286 (312)
T 1wwl_A          217 SGVCSALAAARVQLQGLDLSHNSLRDAA--------GAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRL  286 (312)
T ss_dssp             HHHHHHHHHTTCCCSEEECTTSCCCSSC--------CCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCC
T ss_pred             HHHHHHHHhcCCCCCEEECCCCcCCccc--------chhhhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCC
Confidence            3333333456789999999877531100        01233446899999999999999999887  8999999999974


Q ss_pred             CCCCCCCCCcc-cceeecccccCccEeCCcccC
Q 044550          630 CEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG  661 (662)
Q Consensus       630 ~~~lp~l~~Lp-L~~l~l~~l~~L~~~~n~~~g  661 (662)
                      . .+|.++.+| |+.|+        +.+|.|++
T Consensus       287 ~-~~p~~~~l~~L~~L~--------L~~N~l~~  310 (312)
T 1wwl_A          287 D-RNPSPDELPQVGNLS--------LKGNPFLD  310 (312)
T ss_dssp             C-SCCCTTTSCEEEEEE--------CTTCTTTC
T ss_pred             C-CChhHhhCCCCCEEe--------ccCCCCCC
Confidence            4 446667777 55554        45666665

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.58  E-value=2.1e-15  Score=168.07  Aligned_cols=119  Identities=20%  Similarity=0.274  Sum_probs=88.7

Q ss_pred             cCcccccccccccccCcc-cCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEec
Q 044550          408 KLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLN  484 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l  484 (662)
                      +++.|..-++.+..+|.. +..+++|++|+|++|.++.+|+ .++++++|++|++++|. +..+|. .++.+++|++|++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEe
Confidence            333333335778888876 4679999999999999998865 89999999999999998 666654 5799999999999


Q ss_pred             CCCccccccCCc-CCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550          485 DGTYLLKYMPIG-ISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ  530 (662)
Q Consensus       485 ~~~~~~~~~p~~-i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~  530 (662)
                      ++|.. ..+|.. ++.+++|++|++.  ++......+..+..+.+|.
T Consensus       131 ~~n~l-~~l~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~~l~~L~  174 (597)
T 3oja_B          131 ERNDL-SSLPRGIFHNTPKLTTLSMS--NNNLERIEDDTFQATTSLQ  174 (597)
T ss_dssp             CSSCC-CCCCTTTTTTCTTCCEEECC--SSCCCBCCTTTTTTCTTCC
T ss_pred             eCCCC-CCCCHHHhccCCCCCEEEee--CCcCCCCChhhhhcCCcCc
Confidence            99976 567766 5899999999743  3333333333444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.58  E-value=8.9e-15  Score=162.40  Aligned_cols=123  Identities=25%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccc-
Q 044550          372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIP-  446 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-  446 (662)
                      .+..+++|.+..+.+..++..            .|.+++.|+++   +|.+..++ ..+.++++|++|+|++|.++.+| 
T Consensus        26 l~~~l~~L~Ls~n~l~~~~~~------------~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~   93 (570)
T 2z63_A           26 LPFSTKNLDLSFNPLRHLGSY------------SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLAL   93 (570)
T ss_dssp             SCSSCCEEECCSCCCCEECTT------------TTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECT
T ss_pred             ccccccEEEccCCccCccChh------------HhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCH
Confidence            456788888888877654321            14444555554   34555553 34566666666666666666554 


Q ss_pred             hhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccc-ccCCcCCCCCCCCccC
Q 044550          447 ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLK-YMPIGISRLTSLRTLE  507 (662)
Q Consensus       447 ~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~-~~p~~i~~L~~L~~L~  507 (662)
                      ..++++++|++|++++|. +..+|. .++++++|++|++++|.... .+|..++++++|++|+
T Consensus        94 ~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~  155 (570)
T 2z63_A           94 GAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLD  155 (570)
T ss_dssp             TTTTTCTTCCEEECTTSC-CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEE
T ss_pred             hhhcCccccccccccccc-cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEe
Confidence            456666666666666665 555544 46666666666666665432 3566666666666665

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.57  E-value=4.2e-15  Score=168.71  Aligned_cols=136  Identities=21%  Similarity=0.283  Sum_probs=76.9

Q ss_pred             CCCceeEEEEecCCCCCccc-cccccccc---c--------cchHhhhcCcccccc---cccccccCc-ccCCCCcccee
Q 044550          372 FGDNVRHLGLNFQRGASFPM-SIHRFNRF---S--------ILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYL  435 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~~-~~~~l~~l---~--------~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L  435 (662)
                      .+..+++|.+..+.+..++. .+.++..+   .        ..+..|.+++.|+++   +|.+..+|. .|+++++|++|
T Consensus        23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEE
T ss_pred             cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEE
Confidence            35789999999888876653 23333222   1        224445555566655   345556654 36666666666


Q ss_pred             eecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC--CCCCCCCccC
Q 044550          436 NLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI--SRLTSLRTLE  507 (662)
Q Consensus       436 ~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~L~~L~~L~  507 (662)
                      ++++|.+..+| ..++++++|++|++++|......|..++++++|++|++++|......|..+  ..+++|+.|+
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            66666666554 356666666666666665333334455666666666666665422222222  2345566654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.57  E-value=5.4e-15  Score=159.09  Aligned_cols=206  Identities=21%  Similarity=0.253  Sum_probs=150.6

Q ss_pred             ccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      ..+..+|..+.  .+|++|+|++|.++.+ |..+.++++|++|++++|. +..+ |..+..+++|++|++++|.. ..+|
T Consensus        64 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~l-~~~~  139 (452)
T 3zyi_A           64 RGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDNWL-TVIP  139 (452)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCC-SBCC
T ss_pred             CCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEECCCCcC-CccC
Confidence            46777887765  6899999999999987 5689999999999999998 5555 46889999999999999976 5555


Q ss_pred             C-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550          495 I-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD  573 (662)
Q Consensus       495 ~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  573 (662)
                      . .++.+++|++|++.  .+.......   ..+..+++|+.|.+.++..      ........+.++.+|+.|+++.+..
T Consensus       140 ~~~~~~l~~L~~L~L~--~N~l~~~~~---~~~~~l~~L~~L~l~~~~~------l~~i~~~~~~~l~~L~~L~L~~n~l  208 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLR--NNPIESIPS---YAFNRVPSLMRLDLGELKK------LEYISEGAFEGLFNLKYLNLGMCNI  208 (452)
T ss_dssp             TTTSSSCTTCCEEECC--SCCCCEECT---TTTTTCTTCCEEECCCCTT------CCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             hhhhcccCCCCEEECC--CCCcceeCH---hHHhcCCcccEEeCCCCCC------ccccChhhccCCCCCCEEECCCCcc
Confidence            4 58899999999743  333321112   2344556666666665421      1122233467788999999987753


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN  648 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~  648 (662)
                      .           .+..+..+++|+.|++++|.+..+ |.++..+++|++|+|++|......| .++.+| |+.|++.+
T Consensus       209 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  275 (452)
T 3zyi_A          209 K-----------DMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAH  275 (452)
T ss_dssp             S-----------SCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             c-----------ccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCC
Confidence            1           123467789999999999997766 6778899999999999998554322 366677 77776653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.56  E-value=1.9e-14  Score=157.86  Aligned_cols=127  Identities=18%  Similarity=0.138  Sum_probs=82.1

Q ss_pred             eEEEEecCCCCCcccccc-ccccc-------c-cchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCc
Q 044550          377 RHLGLNFQRGASFPMSIH-RFNRF-------S-ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIE  443 (662)
Q Consensus       377 r~l~l~~~~~~~~~~~~~-~l~~l-------~-~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~  443 (662)
                      +.+.+..+.+..+|..+. +++.+       . ..+..|..++.|+++   +|.+..+ |..++++++|++|+|++|.++
T Consensus         3 ~~l~ls~n~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            3 FLVDRSKNGLIHVPKDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CEEECTTSCCSSCCCSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             ceEecCCCCcccccccccccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            456666666666664332 33322       1 334556777777776   4566665 567777888888888888877


Q ss_pred             ccchhhhcCCCccEEeccCCCCCc-cCCccccccccccEEecCCCccccccCCcCCCCCCC--CccCc
Q 044550          444 RIPETLCELYNLQKLDIRGCQYLR-GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL--RTLEK  508 (662)
Q Consensus       444 ~lp~~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~~  508 (662)
                      .+|..  .+++|++|++++|.... .+|..++++++|++|++++|....   ..++.+++|  +.|++
T Consensus        83 ~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l  145 (520)
T 2z7x_B           83 KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLL  145 (520)
T ss_dssp             EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEE
T ss_pred             ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEe
Confidence            77776  77888888888777322 356777888888888887775422   335555566  66653

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.56  E-value=1.9e-14  Score=160.89  Aligned_cols=120  Identities=19%  Similarity=0.182  Sum_probs=85.2

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccc-h
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIP-E  447 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~  447 (662)
                      ...+++|.+..+.+..++            +..|.+++.|+.+   +|.+..+ |..|+++++|++|++++|.++.+| .
T Consensus        55 l~~L~~L~Ls~n~l~~i~------------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~  122 (606)
T 3vq2_A           55 FSELQWLDLSRCEIETIE------------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESF  122 (606)
T ss_dssp             CTTCCEEECTTCCCCEEC------------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSS
T ss_pred             CccCcEEeCCCCcccccC------------HHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcccccccc
Confidence            457888888777666442            2225566666666   4667666 677888888888888888887776 5


Q ss_pred             hhhcCCCccEEeccCCCCCc-cCCccccccccccEEecCCCccccccCCcCCCCCCCC
Q 044550          448 TLCELYNLQKLDIRGCQYLR-GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLR  504 (662)
Q Consensus       448 ~i~~L~~L~~L~l~~~~~l~-~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~  504 (662)
                      .++++++|++|++++|.... .+|..++++++|++|++++|......|..++.+++|+
T Consensus       123 ~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  180 (606)
T 3vq2_A          123 PIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENP  180 (606)
T ss_dssp             CCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCT
T ss_pred             ccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccc
Confidence            78888888888888887322 4688888888888888888866444455566666554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.56  E-value=8.2e-15  Score=157.06  Aligned_cols=206  Identities=19%  Similarity=0.267  Sum_probs=150.7

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      ..+..+|..+.  .++++|+|++|.++.++ ..+.++++|++|++++|. +..++ ..+..+++|++|++++|.. ..+|
T Consensus        53 ~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l-~~~~  128 (440)
T 3zyj_A           53 KNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRL-TTIP  128 (440)
T ss_dssp             CCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCC-SSCC
T ss_pred             CCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcC-CeeC
Confidence            46778888775  78999999999999886 689999999999999998 65555 6789999999999999976 5565


Q ss_pred             C-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550          495 I-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD  573 (662)
Q Consensus       495 ~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  573 (662)
                      . .+..+++|++|++.  ++........   .+..+++|+.|.+.+...      ........+.++++|+.|+++.+..
T Consensus       129 ~~~~~~l~~L~~L~L~--~N~i~~~~~~---~~~~l~~L~~L~l~~~~~------l~~i~~~~~~~l~~L~~L~L~~n~l  197 (440)
T 3zyj_A          129 NGAFVYLSKLKELWLR--NNPIESIPSY---AFNRIPSLRRLDLGELKR------LSYISEGAFEGLSNLRYLNLAMCNL  197 (440)
T ss_dssp             TTTSCSCSSCCEEECC--SCCCCEECTT---TTTTCTTCCEEECCCCTT------CCEECTTTTTTCSSCCEEECTTSCC
T ss_pred             HhHhhccccCceeeCC--CCcccccCHH---HhhhCcccCEeCCCCCCC------cceeCcchhhcccccCeecCCCCcC
Confidence            4 68999999999743  3333211122   344555666666665411      1122233467789999999987753


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN  648 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~  648 (662)
                      .           .+..+..+++|+.|++++|....+ |.++..+++|++|+|++|......| .++.+| |+.|++.+
T Consensus       198 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  264 (440)
T 3zyj_A          198 R-----------EIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAH  264 (440)
T ss_dssp             S-----------SCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTT
T ss_pred             c-----------cccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCC
Confidence            1           123467789999999999987766 6788899999999999997553222 356677 77776643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.56  E-value=2.8e-14  Score=158.00  Aligned_cols=126  Identities=19%  Similarity=0.173  Sum_probs=92.9

Q ss_pred             eeEEEEecCCCCCccccc-cccccc-------c-cchHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCC
Q 044550          376 VRHLGLNFQRGASFPMSI-HRFNRF-------S-ILSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRI  442 (662)
Q Consensus       376 ~r~l~l~~~~~~~~~~~~-~~l~~l-------~-~~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i  442 (662)
                      .+.+.+..+.+..+|..+ .+++.+       . ..+..|.+++.|++|   +|.+..+ |..+.++++|++|+|++|.+
T Consensus        33 ~~~l~ls~~~L~~ip~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l  112 (562)
T 3a79_B           33 ESMVDYSNRNLTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL  112 (562)
T ss_dssp             CCEEECTTSCCCSCCTTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             CcEEEcCCCCCccCCCCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence            377888888887777543 334433       1 334567888888887   4677777 66788899999999999999


Q ss_pred             cccchhhhcCCCccEEeccCCCCCccC--CccccccccccEEecCCCccccccCCcCCCCCCC--CccC
Q 044550          443 ERIPETLCELYNLQKLDIRGCQYLRGL--PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL--RTLE  507 (662)
Q Consensus       443 ~~lp~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L--~~L~  507 (662)
                      +.+|..  .+++|++|++++|. +..+  |..++++++|++|++++|....   ..++.+++|  ++|+
T Consensus       113 ~~lp~~--~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~  175 (562)
T 3a79_B          113 QNISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAKFRQ---LDLLPVAHLHLSCIL  175 (562)
T ss_dssp             CEECSC--CCTTCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSBCCT---TTTGGGTTSCEEEEE
T ss_pred             CccCcc--ccccCCEEECCCCC-ccccCchHhhcccCcccEEecCCCcccc---CchhhhhhceeeEEE
Confidence            999887  89999999999988 6554  4789999999999999886532   234444555  5554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=167.33  Aligned_cols=266  Identities=19%  Similarity=0.212  Sum_probs=139.1

Q ss_pred             CCCceeEEEEecCCCCCcc-cccccccccccchHhhhcCcccccc---cc-ccccc-CcccCCCCccceeeecCCCCccc
Q 044550          372 FGDNVRHLGLNFQRGASFP-MSIHRFNRFSILSELFSKLVFLRAL---RN-WIREI-PENVGKLIHLKYLNLSELRIERI  445 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~-~~~~~l~~l~~~~~~~~~l~~Lrvl---~~-~~~~l-p~~i~~l~~Lr~L~L~~~~i~~l  445 (662)
                      .+..++.|.+..+.+..++ ..             |.+++.|++|   +| .+..+ |..|.++++|++|+|++|.+..+
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~-------------~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~   88 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASS-------------FPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL   88 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSS-------------CSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEE
T ss_pred             CCCCcCEEECCCCcCCccChhH-------------CcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCccc
Confidence            5788999999988876442 22             3444444444   22 33344 45556666666666666665544


Q ss_pred             -chhhhcCCCccEEeccCCCCCccCCcc--ccccccccEEecCCCccccccC-CcCCCCCCCCccCceeecCccCCCCcc
Q 044550          446 -PETLCELYNLQKLDIRGCQYLRGLPAG--IRKLMNMRSLLNDGTYLLKYMP-IGISRLTSLRTLEKFVVGGGVDGGGTC  521 (662)
Q Consensus       446 -p~~i~~L~~L~~L~l~~~~~l~~lP~~--i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~~L~~L~~~~~~~~~~~~~~~  521 (662)
                       |..++++++|++|++++|.....+|..  +.++++|++|++++|......| ..++++++|++|++  .++......+.
T Consensus        89 ~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~L--s~N~i~~~~~~  166 (844)
T 3j0a_A           89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDF--SSNQIFLVCEH  166 (844)
T ss_dssp             CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEE--ESSCCCCCCSG
T ss_pred             CHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEEC--CCCcCCeeCHH
Confidence             555666666666666666532334443  5566666666666665422222 34556666666642  22222111122


Q ss_pred             Ccccc--ccCc---------------------------ccCccccccCCCCCCC-CCh----------------------
Q 044550          522 RLESL--KNLQ---------------------------LLRKCSIEGLKGLSNV-SHV----------------------  549 (662)
Q Consensus       522 ~l~~L--~~L~---------------------------~L~~L~i~~~~~~~~~-~~~----------------------  549 (662)
                      .+..+  .+|+                           .|+.|.+++..-.... ..+                      
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~  246 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAG  246 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCS
T ss_pred             HcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccc
Confidence            22222  1111                           1222222221000000 000                      


Q ss_pred             ------hhhhhccccc--cccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCcc
Q 044550          550 ------DEVERLQLYN--KKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLR  620 (662)
Q Consensus       550 ------~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~  620 (662)
                            .......+..  ..+|+.|+++.+...         ......+..+++|+.|++++|....+ |..+..+++|+
T Consensus       247 ~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~---------~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~  317 (844)
T 3j0a_A          247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF---------SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ  317 (844)
T ss_dssp             SSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCC---------EECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred             ccccccCCCChhhhhccccCCccEEECCCCccc---------ccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence                  0000001111  245666666544320         00123456678999999999987655 55778999999


Q ss_pred             EEEecCCCCCCCCC-CCCCcc-cceeecc----------------cccCccEeCCcccC
Q 044550          621 ELKLSLCVNCEHLP-PLGKLP-LEKLQLK----------------NLKSVKRVGNEFLG  661 (662)
Q Consensus       621 ~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~----------------~l~~L~~~~n~~~g  661 (662)
                      +|+|++|......| .++.+| |+.|.+.                +++.|++.+|.+++
T Consensus       318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~  376 (844)
T 3j0a_A          318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT  376 (844)
T ss_dssp             EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred             EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence            99999997654333 467777 7777664                45556666676654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.54  E-value=6.2e-14  Score=155.17  Aligned_cols=220  Identities=20%  Similarity=0.146  Sum_probs=128.7

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      ...++.|.+..+.+..+|..             +.+++.|.+-+|.+..+|.   .+++|++|++++|.++.+|.   .+
T Consensus        60 ~~~L~~L~L~~N~l~~lp~~-------------l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~---~l  120 (622)
T 3g06_A           60 PAHITTLVIPDNNLTSLPAL-------------PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA---LP  120 (622)
T ss_dssp             CTTCSEEEECSCCCSCCCCC-------------CTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC---CC
T ss_pred             CCCCcEEEecCCCCCCCCCc-------------CCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC---CC
Confidence            46777777777766655431             3444445444678888876   67899999999999998887   67


Q ss_pred             CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCccc
Q 044550          453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLL  532 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L  532 (662)
                      .+|++|++++|. +..+|..   +++|++|++++|.. ..+|..+   ++|+.|++.  ++... ..+      ..+++|
T Consensus       121 ~~L~~L~L~~N~-l~~lp~~---l~~L~~L~Ls~N~l-~~l~~~~---~~L~~L~L~--~N~l~-~l~------~~~~~L  183 (622)
T 3g06_A          121 SGLCKLWIFGNQ-LTSLPVL---PPGLQELSVSDNQL-ASLPALP---SELCKLWAY--NNQLT-SLP------MLPSGL  183 (622)
T ss_dssp             TTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCCCCC---TTCCEEECC--SSCCS-CCC------CCCTTC
T ss_pred             CCcCEEECCCCC-CCcCCCC---CCCCCEEECcCCcC-CCcCCcc---CCCCEEECC--CCCCC-CCc------ccCCCC
Confidence            889999999887 7788874   48899999998865 5666544   344444321  11111 111      111222


Q ss_pred             CccccccC--CCCCCCCChhhhhhcccc---------ccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEE
Q 044550          533 RKCSIEGL--KGLSNVSHVDEVERLQLY---------NKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEI  601 (662)
Q Consensus       533 ~~L~i~~~--~~~~~~~~~~~~~~~~l~---------~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l  601 (662)
                      +.|.+++.  ..++..  ...+....+.         ..++|+.|+++.+....           +.  ..+++|++|++
T Consensus       184 ~~L~Ls~N~l~~l~~~--~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~L~~-----------lp--~~l~~L~~L~L  248 (622)
T 3g06_A          184 QELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTS-----------LP--VLPSELKELMV  248 (622)
T ss_dssp             CEEECCSSCCSCCCCC--CTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-----------CC--CCCTTCCEEEC
T ss_pred             cEEECCCCCCCCCCCc--cchhhEEECcCCcccccCCCCCCCCEEEccCCccCc-----------CC--CCCCcCcEEEC
Confidence            22222221  110000  0011111111         12567777776654210           00  34577888888


Q ss_pred             eecCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cceeecc
Q 044550          602 ESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEKLQLK  647 (662)
Q Consensus       602 ~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~l~l~  647 (662)
                      ++|.+..+|.   .+++|++|+|++|... .+|. ++.+| |+.|++.
T Consensus       249 s~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~  292 (622)
T 3g06_A          249 SGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  292 (622)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred             CCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence            8888777776   5678888888888643 4442 44455 4444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.54  E-value=6e-14  Score=144.36  Aligned_cols=248  Identities=16%  Similarity=0.129  Sum_probs=169.0

Q ss_pred             CCceeEEEEecCCCCCcc-cccccccc---cc--------cchHhhhcCcccccc---cccccccCcccCCCCccceeee
Q 044550          373 GDNVRHLGLNFQRGASFP-MSIHRFNR---FS--------ILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNL  437 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~-~~~~~l~~---l~--------~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L  437 (662)
                      ...++.+.+..+.+..++ ..+.++..   +.        ..+..+.+++.|+.+   +|.+..+|..+.  .+|++|++
T Consensus        53 ~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l  130 (332)
T 2ft3_A           53 SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRI  130 (332)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEEC
T ss_pred             CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEEC
Confidence            467888999888877553 23444333   21        235567778888887   578889988876  89999999


Q ss_pred             cCCCCcccch-hhhcCCCccEEeccCCCCCc---cCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecC
Q 044550          438 SELRIERIPE-TLCELYNLQKLDIRGCQYLR---GLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGG  513 (662)
Q Consensus       438 ~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~---~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~  513 (662)
                      ++|.++.+|. .+.++++|++|++++|. +.   ..|..+..+ +|++|++++|.. ..+|..+.  ++|++|++  ..+
T Consensus       131 ~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l-~L~~L~l~~n~l-~~l~~~~~--~~L~~L~l--~~n  203 (332)
T 2ft3_A          131 HDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDGL-KLNYLRISEAKL-TGIPKDLP--ETLNELHL--DHN  203 (332)
T ss_dssp             CSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCSC-CCSCCBCCSSBC-SSCCSSSC--SSCSCCBC--CSS
T ss_pred             CCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccCC-ccCEEECcCCCC-CccCcccc--CCCCEEEC--CCC
Confidence            9999999876 48999999999999998 43   456777777 999999999975 66887665  78998874  333


Q ss_pred             ccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC
Q 044550          514 GVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP  593 (662)
Q Consensus       514 ~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~  593 (662)
                      ......+.   .+..+++|+.|.+.+..       +.......+..+++|+.|+++.+...          .+...+..+
T Consensus       204 ~i~~~~~~---~l~~l~~L~~L~L~~N~-------l~~~~~~~~~~l~~L~~L~L~~N~l~----------~lp~~l~~l  263 (332)
T 2ft3_A          204 KIQAIELE---DLLRYSKLYRLGLGHNQ-------IRMIENGSLSFLPTLRELHLDNNKLS----------RVPAGLPDL  263 (332)
T ss_dssp             CCCCCCTT---SSTTCTTCSCCBCCSSC-------CCCCCTTGGGGCTTCCEEECCSSCCC----------BCCTTGGGC
T ss_pred             cCCccCHH---HhcCCCCCCEEECCCCc-------CCcCChhHhhCCCCCCEEECCCCcCe----------ecChhhhcC
Confidence            33222223   34455556666665431       11122234667889999999887531          223345667


Q ss_pred             CCCcEEEEeecCCCCCCcccc-------cccCccEEEecCCCCCC-CCC--CCCCcc-cceeecccc
Q 044550          594 LNVEELEIESYRGNIFPKWLT-------SLTNLRELKLSLCVNCE-HLP--PLGKLP-LEKLQLKNL  649 (662)
Q Consensus       594 ~~L~~L~l~~~~~~~lP~~i~-------~l~~L~~L~L~~~~~~~-~lp--~l~~Lp-L~~l~l~~l  649 (662)
                      ++|+.|++++|....+|....       .+++|+.|++++|.... .++  .+..++ |+.+.+.+.
T Consensus       264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred             ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence            899999999999887764322       25789999999998441 222  144555 565555543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=4.6e-14  Score=151.44  Aligned_cols=200  Identities=19%  Similarity=0.177  Sum_probs=152.0

Q ss_pred             hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550          406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL  482 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L  482 (662)
                      +.+++.|+.+   ++.+..+| .++.+++|++|++++|.++.+|  ++++++|++|++++|. +..+|  ++.+++|++|
T Consensus        38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~-l~~~~--~~~l~~L~~L  111 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYL  111 (457)
T ss_dssp             HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSC-CSCCC--CTTCTTCCEE
T ss_pred             hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCC-Cceee--cCCCCcCCEE
Confidence            4455556655   57788887 7899999999999999999986  9999999999999998 77776  8899999999


Q ss_pred             ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550          483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN  562 (662)
Q Consensus       483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~  562 (662)
                      ++++|.. ..+|  ++.+++|+.|++  ..+....     + .+..++.|+.|.+.....   ...      ..+..+++
T Consensus       112 ~L~~N~l-~~l~--~~~l~~L~~L~l--~~N~l~~-----l-~l~~l~~L~~L~l~~n~~---~~~------~~~~~l~~  171 (457)
T 3bz5_A          112 NCDTNKL-TKLD--VSQNPLLTYLNC--ARNTLTE-----I-DVSHNTQLTELDCHLNKK---ITK------LDVTPQTQ  171 (457)
T ss_dssp             ECCSSCC-SCCC--CTTCTTCCEEEC--TTSCCSC-----C-CCTTCTTCCEEECTTCSC---CCC------CCCTTCTT
T ss_pred             ECCCCcC-Ceec--CCCCCcCCEEEC--CCCccce-----e-ccccCCcCCEEECCCCCc---ccc------cccccCCc
Confidence            9999975 5565  889999999964  3333311     1 255666676666665421   111      13667789


Q ss_pred             CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-c
Q 044550          563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-L  641 (662)
Q Consensus       563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L  641 (662)
                      |+.|+++.+....           +. +..+++|+.|++++|....+|  +..+++|++|++++|.... +| ++.+| |
T Consensus       172 L~~L~ls~n~l~~-----------l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip-~~~l~~L  235 (457)
T 3bz5_A          172 LTTLDCSFNKITE-----------LD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID-VTPLTQL  235 (457)
T ss_dssp             CCEEECCSSCCCC-----------CC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred             CCEEECCCCccce-----------ec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC-ccccCCC
Confidence            9999998875310           11 567789999999999988774  7789999999999998554 66 77777 7


Q ss_pred             ceeecc
Q 044550          642 EKLQLK  647 (662)
Q Consensus       642 ~~l~l~  647 (662)
                      +.|.+.
T Consensus       236 ~~L~l~  241 (457)
T 3bz5_A          236 TYFDCS  241 (457)
T ss_dssp             SEEECC
T ss_pred             CEEEee
Confidence            777765

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.54  E-value=2e-14  Score=143.81  Aligned_cols=200  Identities=18%  Similarity=0.169  Sum_probs=128.7

Q ss_pred             cCcccccccccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEec
Q 044550          408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLN  484 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l  484 (662)
                      .++.|.+-++.+..++. .+.++++|++|++++|.++.+|. .+.++++|++|++++|. +..+| ..+.++++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC
Confidence            44555555677777765 78889999999999999888765 68889999999999988 55544 67888999999999


Q ss_pred             CCCccccccCCcCCCCCCCCccCceeecCccCC-CCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          485 DGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDG-GGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       485 ~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~-~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      ++|......+..++.+++|++|++.  .+.... ..+.   .+..+++|+.|.+++.    .+.   ......+..+.+|
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~--~n~l~~~~l~~---~~~~l~~L~~L~Ls~N----~l~---~~~~~~~~~l~~L  175 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVA--HNLIQSFKLPE---YFSNLTNLEHLDLSSN----KIQ---SIYCTDLRVLHQM  175 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECC--SSCCCCCCCCG---GGGGCTTCCEEECCSS----CCC---EECGGGGHHHHTC
T ss_pred             CCCCccccCchhcccCCCCCEEECc--CCccceecCch---hhccCCCCCEEECCCC----CCC---cCCHHHhhhhhhc
Confidence            9887644334468888888888643  333211 1122   3444555555555543    111   1112233344445


Q ss_pred             C----cEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-ccccCccEEEecCCCCC
Q 044550          564 L----RLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-TSLTNLRELKLSLCVNC  630 (662)
Q Consensus       564 ~----~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-~~l~~L~~L~L~~~~~~  630 (662)
                      +    .|+++.+...          ..........+|+.|++++|....+|.++ ..+++|++|+|++|+..
T Consensus       176 ~~l~l~L~ls~n~l~----------~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          176 PLLNLSLDLSLNPMN----------FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             TTCCEEEECCSSCCC----------EECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cccceeeecCCCccc----------ccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            5    5555544320          01112223347888888888887777664 57888888888888744

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.52  E-value=4.6e-14  Score=143.45  Aligned_cols=190  Identities=21%  Similarity=0.206  Sum_probs=129.1

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|.+-++.+..+| .+..+++|++|++++|.++.+|. +.++++|++|++++|. +..+| .+..+++|++|+++
T Consensus        40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~-~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred             cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCc-CCCch-hhcCCCCCCEEECC
Confidence            444444444456677765 57788888888888888888877 8888888888888887 77765 58888888888888


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|.. ..+|. ++.+++|+.|++.  .+...     .+..+..+++|+.|.+.+.    .+....     .+..+++|+.
T Consensus       116 ~n~l-~~~~~-l~~l~~L~~L~l~--~n~l~-----~~~~l~~l~~L~~L~l~~n----~l~~~~-----~l~~l~~L~~  177 (308)
T 1h6u_A          116 STQI-TDVTP-LAGLSNLQVLYLD--LNQIT-----NISPLAGLTNLQYLSIGNA----QVSDLT-----PLANLSKLTT  177 (308)
T ss_dssp             TSCC-CCCGG-GTTCTTCCEEECC--SSCCC-----CCGGGGGCTTCCEEECCSS----CCCCCG-----GGTTCTTCCE
T ss_pred             CCCC-CCchh-hcCCCCCCEEECC--CCccC-----cCccccCCCCccEEEccCC----cCCCCh-----hhcCCCCCCE
Confidence            8865 45554 7788888888633  23221     1222555666666666553    112111     1566778888


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                      |+++.+....           ...+..+++|+.|++++|....+| .+..+++|++|+|++|..
T Consensus       178 L~l~~n~l~~-----------~~~l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~i  229 (308)
T 1h6u_A          178 LKADDNKISD-----------ISPLASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQTI  229 (308)
T ss_dssp             EECCSSCCCC-----------CGGGGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEEE
T ss_pred             EECCCCccCc-----------ChhhcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCee
Confidence            8887664310           111456778888888888877776 367888888888888873

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.51  E-value=6.8e-14  Score=139.40  Aligned_cols=172  Identities=22%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             ccccccccccccCc-ccCCCCccceeeecCCCCcccchhh-hcCCCccEEeccCCCCCccCCc-cccccccccEEecCCC
Q 044550          411 FLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERIPETL-CELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGT  487 (662)
Q Consensus       411 ~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~  487 (662)
                      .|.+-++.+..+|. .+..+++|++|++++|.++.+|..+ .++++|++|++++|. +..+|. .+..+++|++|++++|
T Consensus        41 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n  119 (270)
T 2o6q_A           41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRN  119 (270)
T ss_dssp             EEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSS
T ss_pred             EEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCC
Confidence            33333444554443 4555556666666655555555433 455556666665555 444443 2355555666666555


Q ss_pred             ccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEE
Q 044550          488 YLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLG  567 (662)
Q Consensus       488 ~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~  567 (662)
                      ......|..++.+++|++|++.  .+...                                  ......+..+++|+.|+
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~Ls--~n~l~----------------------------------~~~~~~~~~l~~L~~L~  163 (270)
T 2o6q_A          120 QLKSLPPRVFDSLTKLTYLSLG--YNELQ----------------------------------SLPKGVFDKLTSLKELR  163 (270)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECC--SSCCC----------------------------------CCCTTTTTTCTTCCEEE
T ss_pred             ccCeeCHHHhCcCcCCCEEECC--CCcCC----------------------------------ccCHhHccCCcccceeE
Confidence            4422222334555555555321  11110                                  00111233445566666


Q ss_pred             EEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCC
Q 044550          568 LQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCV  628 (662)
Q Consensus       568 l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~  628 (662)
                      ++.+....         .....+..+++|+.|++++|....+|.. +..+++|+.|+|++|+
T Consensus       164 L~~n~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          164 LYNNQLKR---------VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCSSCCSC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ecCCcCcE---------eChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence            65443200         0012244567788888888877777654 5578888888888876

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.51  E-value=5.6e-14  Score=140.52  Aligned_cols=209  Identities=19%  Similarity=0.197  Sum_probs=121.5

Q ss_pred             cccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC
Q 044550          418 WIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       418 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      .+..+|..+.  .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|. .+..+++|++|++++|......|.
T Consensus        18 ~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~   94 (276)
T 2z62_A           18 NFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALG   94 (276)
T ss_dssp             CCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTT
T ss_pred             CccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCccCccChh
Confidence            4555666554  468888888888887765 67788888888888876 555543 677788888888888876444446


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      .++.+++|++|++.  .+.........   +..+++|+.|.+.+..    +...  .....+..+++|+.|+++.+....
T Consensus        95 ~~~~l~~L~~L~l~--~n~l~~~~~~~---~~~l~~L~~L~l~~n~----l~~~--~l~~~~~~l~~L~~L~Ls~N~l~~  163 (276)
T 2z62_A           95 AFSGLSSLQKLVAV--ETNLASLENFP---IGHLKTLKELNVAHNL----IQSF--KLPEYFSNLTNLEHLDLSSNKIQS  163 (276)
T ss_dssp             TTTTCTTCCEEECT--TSCCCCSTTCC---CTTCTTCCEEECCSSC----CCCC--CCCGGGGGCTTCCEEECCSSCCCE
T ss_pred             hhcCCccccEEECC--CCCccccCchh---cccCCCCCEEECcCCc----ccee--cCchhhccCCCCCEEECCCCCCCc
Confidence            67778888877532  22221111212   3344445555544321    1110  012235566788888887664310


Q ss_pred             CCCCchhHHHHhhhCCCCCCCc-EEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC--CCCcc-cceeecc
Q 044550          576 GRRKNEKDKQLLEALQPPLNVE-ELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLK  647 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~-~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~  647 (662)
                      .      ....+..+...+.|. +|++++|....+|.......+|++|+|++|... .+|.  ++.++ |+.+++.
T Consensus       164 ~------~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~  232 (276)
T 2z62_A          164 I------YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLH  232 (276)
T ss_dssp             E------CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCS-CCCTTTTTTCCSCCEEECC
T ss_pred             C------CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCcee-ecCHhHhcccccccEEEcc
Confidence            0      001122222233333 778888877777766666667888888888633 3332  35555 5555544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.51  E-value=9.1e-14  Score=141.22  Aligned_cols=191  Identities=21%  Similarity=0.245  Sum_probs=146.2

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT  505 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~  505 (662)
                      +..+.+|++|++++|.++.+| .+..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~-~~~l~~L~~L~L~~n~l-~~~~-~~~~l~~L~~  111 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKT  111 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCc-CCCChh-HccCCCCCEEEccCCcC-CCch-hhcCCCCCCE
Confidence            446889999999999999997 69999999999999998 888887 99999999999999975 5555 6889999999


Q ss_pred             cCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHH
Q 044550          506 LEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQ  585 (662)
Q Consensus       506 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  585 (662)
                      |++.  ++...     .+..+..+++|+.|.+.+.    .+....     .+..+++|+.|+++.+....          
T Consensus       112 L~l~--~n~l~-----~~~~l~~l~~L~~L~l~~n----~l~~~~-----~l~~l~~L~~L~l~~n~l~~----------  165 (308)
T 1h6u_A          112 LDLT--STQIT-----DVTPLAGLSNLQVLYLDLN----QITNIS-----PLAGLTNLQYLSIGNAQVSD----------  165 (308)
T ss_dssp             EECT--TSCCC-----CCGGGTTCTTCCEEECCSS----CCCCCG-----GGGGCTTCCEEECCSSCCCC----------
T ss_pred             EECC--CCCCC-----CchhhcCCCCCCEEECCCC----ccCcCc-----cccCCCCccEEEccCCcCCC----------
Confidence            9743  33321     2334666677777776654    112211     16678999999998775310          


Q ss_pred             HhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccccc
Q 044550          586 LLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLK  650 (662)
Q Consensus       586 ~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~  650 (662)
                       +..+..+++|+.|++++|....+|. +..+++|++|+|++|... .++++..+| |+.|++.+.+
T Consensus       166 -~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N~l~-~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          166 -LTPLANLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEEEEE
T ss_pred             -ChhhcCCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCCccC-ccccccCCCCCCEEEccCCe
Confidence             1226678999999999999888775 789999999999999744 455578888 8877776543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.50  E-value=2e-14  Score=146.94  Aligned_cols=210  Identities=15%  Similarity=0.101  Sum_probs=118.6

Q ss_pred             hhcCcccccc---cccccccC-cccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccE
Q 044550          406 FSKLVFLRAL---RNWIREIP-ENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRS  481 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~  481 (662)
                      +..++.|+.+   +|.+..++ ..+..+++|++|+|++|.++.+++ +.++++|++|++++|. +..+|    ..++|++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~----~~~~L~~  103 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELL----VGPSIET  103 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSE-EEEEE----ECTTCCE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCc-ccccc----CCCCcCE
Confidence            3333444444   46666654 567778888888888887776655 7778888888888776 55554    3377777


Q ss_pred             EecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccc-ccc
Q 044550          482 LLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQL-YNK  560 (662)
Q Consensus       482 L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l-~~~  560 (662)
                      |++++|.. ..+|..  .+++|++|++  ..+......+..+   ..+++|+.|.+++.       .+.......+ ..+
T Consensus       104 L~l~~n~l-~~~~~~--~~~~L~~L~l--~~N~l~~~~~~~~---~~l~~L~~L~Ls~N-------~l~~~~~~~~~~~l  168 (317)
T 3o53_A          104 LHAANNNI-SRVSCS--RGQGKKNIYL--ANNKITMLRDLDE---GCRSRVQYLDLKLN-------EIDTVNFAELAASS  168 (317)
T ss_dssp             EECCSSCC-SEEEEC--CCSSCEEEEC--CSSCCCSGGGBCT---GGGSSEEEEECTTS-------CCCEEEGGGGGGGT
T ss_pred             EECCCCcc-CCcCcc--ccCCCCEEEC--CCCCCCCccchhh---hccCCCCEEECCCC-------CCCcccHHHHhhcc
Confidence            88777765 333322  3566777653  2333222112223   33344444444432       0111111122 245


Q ss_pred             ccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCC-CCCCc
Q 044550          561 KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLP-PLGKL  639 (662)
Q Consensus       561 ~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp-~l~~L  639 (662)
                      ++|+.|+++.+...           .......+++|+.|++++|....+|..+..+++|++|+|++|... .+| .++.+
T Consensus       169 ~~L~~L~L~~N~l~-----------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          169 DTLEHLNLQYNFIY-----------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             TTCCEEECTTSCCC-----------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             CcCCEEECCCCcCc-----------ccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            67777777665421           012233467788888888777777777777788888888877633 232 23444


Q ss_pred             c-cceeeccc
Q 044550          640 P-LEKLQLKN  648 (662)
Q Consensus       640 p-L~~l~l~~  648 (662)
                      | |+.+++.+
T Consensus       237 ~~L~~L~l~~  246 (317)
T 3o53_A          237 QNLEHFDLRG  246 (317)
T ss_dssp             TTCCEEECTT
T ss_pred             CCCCEEEccC
Confidence            4 44444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=161.54  Aligned_cols=178  Identities=15%  Similarity=0.064  Sum_probs=99.2

Q ss_pred             hcCCCccEEeccCCCCCccC---CccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc
Q 044550          450 CELYNLQKLDIRGCQYLRGL---PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL  526 (662)
Q Consensus       450 ~~L~~L~~L~l~~~~~l~~l---P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L  526 (662)
                      ..+++|++|++++|. +...   |..+..+++|++|++++|.. ..+|..++.+++|++|++.  ++......+  ...+
T Consensus       344 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~l-~~~~~~~~~l~~L~~L~l~--~n~l~~~~~--~~~~  417 (570)
T 2z63_A          344 VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQ--HSNLKQMSE--FSVF  417 (570)
T ss_dssp             CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCSE-EEEEEEEETCTTCCEEECT--TSEEESCTT--SCTT
T ss_pred             ccCCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCcc-ccccccccccCCCCEEEcc--CCccccccc--hhhh
Confidence            455666666666665 4333   45566666777777766654 4444446666677766532  222111101  1123


Q ss_pred             ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550          527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG  606 (662)
Q Consensus       527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~  606 (662)
                      ..+++|+.|.+++..       ........+..+++|+.|+++.+..        ........+..+++|+.|++++|..
T Consensus       418 ~~l~~L~~L~l~~n~-------l~~~~~~~~~~l~~L~~L~l~~n~l--------~~~~~p~~~~~l~~L~~L~l~~n~l  482 (570)
T 2z63_A          418 LSLRNLIYLDISHTH-------TRVAFNGIFNGLSSLEVLKMAGNSF--------QENFLPDIFTELRNLTFLDLSQCQL  482 (570)
T ss_dssp             TTCTTCCEEECTTSC-------CEECCTTTTTTCTTCCEEECTTCEE--------GGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             hcCCCCCEEeCcCCc-------ccccchhhhhcCCcCcEEECcCCcC--------ccccchhhhhcccCCCEEECCCCcc
Confidence            344445555544431       1111223355667788887765531        1112234566778888888888877


Q ss_pred             CCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550          607 NIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN  648 (662)
Q Consensus       607 ~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~  648 (662)
                      ..+ |.++..+++|++|+|++|......| .++.+| |+.+++.+
T Consensus       483 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          483 EQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred             ccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecC
Confidence            665 7778888888888888886443222 145566 55555543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.50  E-value=1.4e-13  Score=156.26  Aligned_cols=227  Identities=19%  Similarity=0.124  Sum_probs=133.9

Q ss_pred             chHhhhcCcccccc---ccccccc-CcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccc
Q 044550          402 LSELFSKLVFLRAL---RNWIREI-PENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRK  475 (662)
Q Consensus       402 ~~~~~~~l~~Lrvl---~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~  475 (662)
                      .+..|.+++.|+++   +|.+..+ |..++++++|++|+|++|.++.+|+ .++++++|++|++++|. +..+| ..+++
T Consensus        41 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~  119 (680)
T 1ziw_A           41 PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS-IQKIKNNPFVK  119 (680)
T ss_dssp             CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCSCTTTT
T ss_pred             CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc-cCccChhHccc
Confidence            34457777777777   4566665 5567788888888888888888877 58888888888888887 55555 56888


Q ss_pred             cccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhc
Q 044550          476 LMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERL  555 (662)
Q Consensus       476 L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~  555 (662)
                      +++|++|++++|......|..++++++|++|++.  .+......+..+. ...++.|+.|.+.+..    +.   .....
T Consensus       120 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~-~~~~~~L~~L~L~~n~----l~---~~~~~  189 (680)
T 1ziw_A          120 QKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS--NNKIQALKSEELD-IFANSSLKKLELSSNQ----IK---EFSPG  189 (680)
T ss_dssp             CTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECC--SSCCCCBCHHHHG-GGTTCEESEEECTTCC----CC---CBCTT
T ss_pred             cCCCCEEECCCCcccccCchhhcccccCCEEEcc--CCcccccCHHHhh-ccccccccEEECCCCc----cc---ccChh
Confidence            8888888888887655566677888888888633  2222111111111 1123445554444321    00   00111


Q ss_pred             ccccc---------------------------ccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC--CCCcEEEEeecCC
Q 044550          556 QLYNK---------------------------KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP--LNVEELEIESYRG  606 (662)
Q Consensus       556 ~l~~~---------------------------~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~--~~L~~L~l~~~~~  606 (662)
                      .+..+                           .+|+.|+++.+....         .....+...  ++|+.|++++|..
T Consensus       190 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~---------~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          190 CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST---------TSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             GGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE---------ECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             hhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc---------cChhHhhccCcCCCCEEECCCCCc
Confidence            12222                           345555554432100         000111112  3477777777765


Q ss_pred             CCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-cceeeccc
Q 044550          607 NIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-LEKLQLKN  648 (662)
Q Consensus       607 ~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-L~~l~l~~  648 (662)
                      ..+ |.++..+++|++|+|++|......| .++.++ |+.|.+.+
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  305 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKR  305 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTT
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccc
Confidence            544 4566677777777777776544333 366677 77777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.50  E-value=3.8e-14  Score=153.50  Aligned_cols=181  Identities=15%  Similarity=0.101  Sum_probs=81.6

Q ss_pred             cccccccC-cccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550          416 RNWIREIP-ENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       416 ~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      +|.+..+| ..++.+++|++|+|++|.++.+++ ++++++|++|++++|. +..+|.    .++|++|++++|... .+|
T Consensus        43 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~----~~~L~~L~L~~N~l~-~~~  115 (487)
T 3oja_A           43 GNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNY-VQELLV----GPSIETLHAANNNIS-RVS  115 (487)
T ss_dssp             SSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSE-EEEEEE----CTTCCEEECCSSCCC-CEE
T ss_pred             CCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCc-CCCCCC----CCCcCEEECcCCcCC-CCC
Confidence            44454442 455556666666666666554443 5566666666666655 444432    255566666555442 222


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccc-ccccCCcEEEEecCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLY-NKKNLLRLGLQFGGD  573 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~  573 (662)
                      .  ..+++|+.|++  .++......+..+..   ++.|+.|.+++.       .+.......+. .+++|+.|+++.+..
T Consensus       116 ~--~~l~~L~~L~L--~~N~l~~~~~~~~~~---l~~L~~L~Ls~N-------~l~~~~~~~l~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          116 C--SRGQGKKNIYL--ANNKITMLRDLDEGC---RSRVQYLDLKLN-------EIDTVNFAELAASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             E--CCCSSCEEEEC--CSSCCCSGGGBCGGG---GSSEEEEECTTS-------CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             c--cccCCCCEEEC--CCCCCCCCCchhhcC---CCCCCEEECCCC-------CCCCcChHHHhhhCCcccEEecCCCcc
Confidence            2  12345555532  222222111222222   223333333321       00011111121 345555555554432


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      .           .......+++|+.|++++|....+|.++..+++|+.|+|++|.
T Consensus       182 ~-----------~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          182 Y-----------DVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             C-----------EEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred             c-----------cccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc
Confidence            0           0012223455666666666555555555555666666666655

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.49  E-value=2.7e-13  Score=136.37  Aligned_cols=165  Identities=20%  Similarity=0.114  Sum_probs=87.1

Q ss_pred             ccccccc-CcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC
Q 044550          416 RNWIREI-PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       416 ~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      +|.+..+ |..+..+++|++|+|++|.++.+|.. +.+++|++|++++|. +..+|..+..+++|++|++++|.. ..+|
T Consensus        40 ~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l-~~l~  116 (290)
T 1p9a_G           40 ENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRL-TSLP  116 (290)
T ss_dssp             TSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCC-CCCC
T ss_pred             CCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcC-cccC
Confidence            3444443 33445555555555555555555443 455555555555554 445555555555555555555543 2222


Q ss_pred             -CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550          495 -IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD  573 (662)
Q Consensus       495 -~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  573 (662)
                       ..++.+++|+.|++  .++...                                  ......+..+++|+.|+++.+..
T Consensus       117 ~~~~~~l~~L~~L~L--~~N~l~----------------------------------~~~~~~~~~l~~L~~L~L~~N~l  160 (290)
T 1p9a_G          117 LGALRGLGELQELYL--KGNELK----------------------------------TLPPGLLTPTPKLEKLSLANNNL  160 (290)
T ss_dssp             SSTTTTCTTCCEEEC--TTSCCC----------------------------------CCCTTTTTTCTTCCEEECTTSCC
T ss_pred             HHHHcCCCCCCEEEC--CCCCCC----------------------------------ccChhhcccccCCCEEECCCCcC
Confidence             33445555555431  111110                                  01111233445566666654432


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      ..         .....+..+++|+.|++++|....+|.++..+++|+.|+|++|.
T Consensus       161 ~~---------l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          161 TE---------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             SC---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             Cc---------cCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCC
Confidence            00         00122345678888888888888888888888888888888876

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.49  E-value=6.1e-14  Score=137.03  Aligned_cols=207  Identities=17%  Similarity=0.163  Sum_probs=109.6

Q ss_pred             ccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCC-CccccccC-
Q 044550          419 IREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDG-TYLLKYMP-  494 (662)
Q Consensus       419 ~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~-~~~~~~~p-  494 (662)
                      ++.+|. +.  .+|++|++++|.++.+|+ .+.++++|++|++++|..+..+|. .+..+++|++|++++ |.. ..+| 
T Consensus        23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l-~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNL-TYIDP   98 (239)
T ss_dssp             CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTC-CEECT
T ss_pred             ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCe-eEcCH
Confidence            444554 32  256666666666665554 455666666666666543444443 455666666666665 332 3333 


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCC-cEEEEecCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLL-RLGLQFGGD  573 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~  573 (662)
                      ..++.+++|++|++...  .... .+. +..+.+|+.|+.|.+.+..   .   +.......+.++.+|+ .|+++.+..
T Consensus        99 ~~f~~l~~L~~L~l~~n--~l~~-lp~-~~~l~~L~~L~~L~l~~N~---~---l~~i~~~~~~~l~~L~~~L~l~~n~l  168 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNT--GLKM-FPD-LTKVYSTDIFFILEITDNP---Y---MTSIPVNAFQGLCNETLTLKLYNNGF  168 (239)
T ss_dssp             TSEECCTTCCEEEEEEE--CCCS-CCC-CTTCCBCCSEEEEEEESCT---T---CCEECTTTTTTTBSSEEEEECCSCCC
T ss_pred             HHhCCCCCCCEEeCCCC--CCcc-ccc-cccccccccccEEECCCCc---c---hhhcCcccccchhcceeEEEcCCCCC
Confidence            34555666666643222  1111 111 2333333322244444320   1   1111222345567777 777765542


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecC-CCCCCc-ccccc-cCccEEEecCCCCCCCCCCCCCcc-cceeecccc
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYR-GNIFPK-WLTSL-TNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL  649 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~-~~~lP~-~i~~l-~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l  649 (662)
                      .          .+.......++|++|++++|. ...+|. .+..+ ++|++|+|++|.. ..+|.- .++ ++.|.+.+.
T Consensus       169 ~----------~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l-~~l~~~-~~~~L~~L~l~~~  236 (239)
T 2xwt_C          169 T----------SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV-TALPSK-GLEHLKELIARNT  236 (239)
T ss_dssp             C----------EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC-CCCCCT-TCTTCSEEECTTC
T ss_pred             c----------ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc-ccCChh-HhccCceeeccCc
Confidence            1          011111122689999999994 777754 56678 9999999999874 356543 677 888877765


Q ss_pred             cC
Q 044550          650 KS  651 (662)
Q Consensus       650 ~~  651 (662)
                      ..
T Consensus       237 ~~  238 (239)
T 2xwt_C          237 WT  238 (239)
T ss_dssp             --
T ss_pred             cC
Confidence            44

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.48  E-value=5.3e-14  Score=155.39  Aligned_cols=222  Identities=19%  Similarity=0.161  Sum_probs=147.7

Q ss_pred             hcCccccccccccccc-CcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550          407 SKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~  483 (662)
                      ..++.|.+-+|.+..+ |..+.++++|++|++++|.++.+| ..++++++|++|++++|. +..+|.. ++.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCc-cCccCHHHhccCCCCcEEE
Confidence            3444555546777776 567899999999999999999876 579999999999999998 6666654 99999999999


Q ss_pred             cCCCcccc-ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550          484 NDGTYLLK-YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN  562 (662)
Q Consensus       484 l~~~~~~~-~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~  562 (662)
                      +++|.... ..|..++.+++|++|++..+  ......  ....+..+++|+.|.+.+..       +.......+..+++
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n--~~~~~~--~~~~~~~l~~L~~L~L~~n~-------l~~~~~~~l~~l~~  173 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNV--ETFSEI--RRIDFAGLTSLNELEIKALS-------LRNYQSQSLKSIRD  173 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEES--SSCCEE--CTTTTTTCCEEEEEEEEETT-------CCEECTTTTTTCSE
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCC--cccccc--CHhhhhcccccCeeeccCCc-------ccccChhhhhcccc
Confidence            99997643 45678999999999975433  211111  11234555566666665431       11222334667788


Q ss_pred             CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC---Ccccc-cccCccEEEecCCCCCCCCC----
Q 044550          563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF---PKWLT-SLTNLRELKLSLCVNCEHLP----  634 (662)
Q Consensus       563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l---P~~i~-~l~~L~~L~L~~~~~~~~lp----  634 (662)
                      |+.|+++.+..       ......  ....+++|++|++++|....+   |.++. .+++|++|++++|......+    
T Consensus       174 L~~L~l~~n~~-------~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~  244 (549)
T 2z81_A          174 IHHLTLHLSES-------AFLLEI--FADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL  244 (549)
T ss_dssp             EEEEEEECSBS-------TTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHH
T ss_pred             CceEecccCcc-------cccchh--hHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHH
Confidence            89998887653       111111  123468899999999887665   33333 57889999999886322110    


Q ss_pred             -CCCCcc-cceeecccc
Q 044550          635 -PLGKLP-LEKLQLKNL  649 (662)
Q Consensus       635 -~l~~Lp-L~~l~l~~l  649 (662)
                       .+..++ ++.+.+.++
T Consensus       245 ~~~~~~~~L~~l~l~~~  261 (549)
T 2z81_A          245 KLLRYILELSEVEFDDC  261 (549)
T ss_dssp             GGGGGCTTCCEEEEESC
T ss_pred             HHhhhhccccccccccc
Confidence             123445 566655544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.47  E-value=3.4e-15  Score=152.62  Aligned_cols=234  Identities=13%  Similarity=0.074  Sum_probs=159.0

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhh
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETL  449 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i  449 (662)
                      ..+++.|.+..+.+..++            +..+..++.|+.+   +|.+...++ +..+++|++|++++|.++.+|.  
T Consensus        33 ~~~L~~L~L~~n~l~~~~------------~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~--   97 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQIS------------AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV--   97 (317)
T ss_dssp             GGGCSEEECTTSCCCCCC------------HHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE--
T ss_pred             CCCCCEEECcCCccCcCC------------HHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC--
Confidence            346777777777665442            2336666677776   567776665 8899999999999999888764  


Q ss_pred             hcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCcccc-cc
Q 044550          450 CELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESL-KN  528 (662)
Q Consensus       450 ~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L-~~  528 (662)
                        .++|++|++++|. +..+|..  .+++|++|++++|......|..++.+++|+.|++.  .+.....   ....+ ..
T Consensus        98 --~~~L~~L~l~~n~-l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls--~N~l~~~---~~~~~~~~  167 (317)
T 3o53_A           98 --GPSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLK--LNEIDTV---NFAELAAS  167 (317)
T ss_dssp             --CTTCCEEECCSSC-CSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECT--TSCCCEE---EGGGGGGG
T ss_pred             --CCCcCEEECCCCc-cCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECC--CCCCCcc---cHHHHhhc
Confidence              4899999999988 6666543  47889999999997755555678889999998643  3332111   11222 24


Q ss_pred             CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCC
Q 044550          529 LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNI  608 (662)
Q Consensus       529 L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~  608 (662)
                      ++.|+.|.+++..    +...     .....+++|+.|+++.+...          .....+..+++|+.|++++|....
T Consensus       168 l~~L~~L~L~~N~----l~~~-----~~~~~l~~L~~L~Ls~N~l~----------~l~~~~~~l~~L~~L~L~~N~l~~  228 (317)
T 3o53_A          168 SDTLEHLNLQYNF----IYDV-----KGQVVFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVL  228 (317)
T ss_dssp             TTTCCEEECTTSC----CCEE-----ECCCCCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCE
T ss_pred             cCcCCEEECCCCc----Cccc-----ccccccccCCEEECCCCcCC----------cchhhhcccCcccEEECcCCcccc
Confidence            5566666665531    1111     12234678999999877531          112235567899999999999888


Q ss_pred             CCcccccccCccEEEecCCCCC-CCCC-CCCCcc-cceeeccccc
Q 044550          609 FPKWLTSLTNLRELKLSLCVNC-EHLP-PLGKLP-LEKLQLKNLK  650 (662)
Q Consensus       609 lP~~i~~l~~L~~L~L~~~~~~-~~lp-~l~~Lp-L~~l~l~~l~  650 (662)
                      +|.++..+++|++|+|++|... ..+| .++.+| ++.+.+.++.
T Consensus       229 l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             ECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            9999989999999999999854 3222 245666 6666665433

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.47  E-value=2.9e-13  Score=145.08  Aligned_cols=67  Identities=18%  Similarity=0.362  Sum_probs=34.6

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~  488 (662)
                      +|.+..+| .++.+++|++|++++|.++.+|..+   .+|++|++++|. +..+| .++.+++|++|++++|.
T Consensus       140 ~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~-l~~l~-~~~~l~~L~~L~l~~N~  206 (454)
T 1jl5_A          140 NNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQ-LEELP-ELQNLPFLTAIYADNNS  206 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSC-CSSCC-CCTTCTTCCEEECCSSC
T ss_pred             CCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCc-CCcCc-cccCCCCCCEEECCCCc
Confidence            34555555 3555555666666555555555432   255555555554 44444 35555555555555443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.46  E-value=2.4e-13  Score=135.40  Aligned_cols=184  Identities=23%  Similarity=0.297  Sum_probs=127.5

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCccc-cccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGI-RKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i-~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.++.+|..+.  .+|++|++++|.++.+|. .+.++++|++|++++|. +..+|..+ ..+++|++|++++|.. ..+
T Consensus        25 ~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l-~~~  100 (270)
T 2o6q_A           25 SKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKL-QAL  100 (270)
T ss_dssp             TSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCC-CCC
T ss_pred             CCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcC-CcC
Confidence            457777887665  678899999998888875 68889999999998887 67777654 7788999999988875 444


Q ss_pred             C-CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecC
Q 044550          494 P-IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGG  572 (662)
Q Consensus       494 p-~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  572 (662)
                      | ..++.+++|+.|++.  ++....                                  .....+..+++|+.|+++.+.
T Consensus       101 ~~~~~~~l~~L~~L~l~--~n~l~~----------------------------------~~~~~~~~l~~L~~L~Ls~n~  144 (270)
T 2o6q_A          101 PIGVFDQLVNLAELRLD--RNQLKS----------------------------------LPPRVFDSLTKLTYLSLGYNE  144 (270)
T ss_dssp             CTTTTTTCSSCCEEECC--SSCCCC----------------------------------CCTTTTTTCTTCCEEECCSSC
T ss_pred             CHhHcccccCCCEEECC--CCccCe----------------------------------eCHHHhCcCcCCCEEECCCCc
Confidence            4 345777777777532  121100                                  001123455677778777664


Q ss_pred             CCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccc
Q 044550          573 DIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKN  648 (662)
Q Consensus       573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~  648 (662)
                      ...         .....+..+++|+.|++++|....+|.. +..+++|++|+|++|... .+|.  ++.+| |+.|.+.+
T Consensus       145 l~~---------~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~  214 (270)
T 2o6q_A          145 LQS---------LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQE  214 (270)
T ss_dssp             CCC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCc---------cCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCC-cCCHHHhccccCCCEEEecC
Confidence            310         0112356679999999999998888764 678999999999999744 4443  56677 77766654


Q ss_pred             c
Q 044550          649 L  649 (662)
Q Consensus       649 l  649 (662)
                      .
T Consensus       215 N  215 (270)
T 2o6q_A          215 N  215 (270)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=4.6e-13  Score=134.70  Aligned_cols=190  Identities=20%  Similarity=0.129  Sum_probs=127.7

Q ss_pred             hcCcccccc---cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550          407 SKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL  482 (662)
Q Consensus       407 ~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L  482 (662)
                      .+++.++.+   ++.++.+|..+.  .+|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +.+++|++|
T Consensus         7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~l~~L~~L   82 (290)
T 1p9a_G            7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQVD-GTLPVLGTL   82 (290)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEECC-SCCTTCCEE
T ss_pred             cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCc-cCcccCC-CCCCcCCEE
Confidence            344444444   457777887765  6888889988888876 4578888889999998887 7777664 788888899


Q ss_pred             ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550          483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN  562 (662)
Q Consensus       483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~  562 (662)
                      ++++|.. ..+|..+..+++|+.|++.  .+......                                  ...+..+.+
T Consensus        83 ~Ls~N~l-~~l~~~~~~l~~L~~L~l~--~N~l~~l~----------------------------------~~~~~~l~~  125 (290)
T 1p9a_G           83 DLSHNQL-QSLPLLGQTLPALTVLDVS--FNRLTSLP----------------------------------LGALRGLGE  125 (290)
T ss_dssp             ECCSSCC-SSCCCCTTTCTTCCEEECC--SSCCCCCC----------------------------------SSTTTTCTT
T ss_pred             ECCCCcC-CcCchhhccCCCCCEEECC--CCcCcccC----------------------------------HHHHcCCCC
Confidence            8888865 6778777788888877532  22210000                                  112334556


Q ss_pred             CCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCccc-ccccCccEEEecCCCCCCCCC-CCCCcc
Q 044550          563 LLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWL-TSLTNLRELKLSLCVNCEHLP-PLGKLP  640 (662)
Q Consensus       563 L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i-~~l~~L~~L~L~~~~~~~~lp-~l~~Lp  640 (662)
                      |+.|+++.+....         .....+..+++|+.|++++|....+|..+ ..+++|++|+|++|... .+| .+...+
T Consensus       126 L~~L~L~~N~l~~---------~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~  195 (290)
T 1p9a_G          126 LQELYLKGNELKT---------LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (290)
T ss_dssp             CCEEECTTSCCCC---------CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             CCEEECCCCCCCc---------cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccc
Confidence            6777766553210         01123456789999999999999888765 57999999999999844 333 234444


Q ss_pred             -cceeecc
Q 044550          641 -LEKLQLK  647 (662)
Q Consensus       641 -L~~l~l~  647 (662)
                       |+.+.+.
T Consensus       196 ~L~~l~L~  203 (290)
T 1p9a_G          196 LLPFAFLH  203 (290)
T ss_dssp             CCSEEECC
T ss_pred             cCCeEEeC
Confidence             5544444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=4.9e-14  Score=152.61  Aligned_cols=231  Identities=13%  Similarity=0.068  Sum_probs=162.8

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhh
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLC  450 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~  450 (662)
                      .+++.|.+..+.+..++            +..|..++.|+.|   +|.+...++ ++.+++|++|+|++|.++.+|..  
T Consensus        34 ~~L~~L~Ls~n~l~~~~------------~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~--   98 (487)
T 3oja_A           34 WNVKELDLSGNPLSQIS------------AADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG--   98 (487)
T ss_dssp             GGCCEEECCSSCCCCCC------------GGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC--
T ss_pred             CCccEEEeeCCcCCCCC------------HHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC--
Confidence            46788888877776543            2235666677776   577776655 89999999999999999988753  


Q ss_pred             cCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc
Q 044550          451 ELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ  530 (662)
Q Consensus       451 ~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~  530 (662)
                        ++|++|++++|. +..+|..  .+++|++|++++|......|..++.+++|+.|++  .++......+..+.  ..++
T Consensus        99 --~~L~~L~L~~N~-l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L--s~N~l~~~~~~~l~--~~l~  169 (487)
T 3oja_A           99 --PSIETLHAANNN-ISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL--KLNEIDTVNFAELA--ASSD  169 (487)
T ss_dssp             --TTCCEEECCSSC-CCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEEC--TTSCCCEEEGGGGG--GGTT
T ss_pred             --CCcCEEECcCCc-CCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEEC--CCCCCCCcChHHHh--hhCC
Confidence              899999999998 6666653  5789999999999876666778899999999974  33433221222221  2455


Q ss_pred             ccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCC
Q 044550          531 LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFP  610 (662)
Q Consensus       531 ~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP  610 (662)
                      .|+.|.+++..    +...     ..+..+++|+.|+++.+...          .....+..+++|+.|++++|....+|
T Consensus       170 ~L~~L~Ls~N~----l~~~-----~~~~~l~~L~~L~Ls~N~l~----------~~~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          170 TLEHLNLQYNF----IYDV-----KGQVVFAKLKTLDLSSNKLA----------FMGPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             TCCEEECTTSC----CCEE-----ECCCCCTTCCEEECCSSCCC----------EECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             cccEEecCCCc----cccc-----cccccCCCCCEEECCCCCCC----------CCCHhHcCCCCccEEEecCCcCcccc
Confidence            66666665531    1111     22335789999999887531          11223556789999999999999999


Q ss_pred             cccccccCccEEEecCCCCC-CCCC-CCCCcc-cceeecc
Q 044550          611 KWLTSLTNLRELKLSLCVNC-EHLP-PLGKLP-LEKLQLK  647 (662)
Q Consensus       611 ~~i~~l~~L~~L~L~~~~~~-~~lp-~l~~Lp-L~~l~l~  647 (662)
                      .++..+++|+.|++++|... ..+| .++.+| +..+.+.
T Consensus       231 ~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            99999999999999999854 3332 255666 6666553

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.45  E-value=5.9e-14  Score=142.90  Aligned_cols=89  Identities=20%  Similarity=0.116  Sum_probs=56.3

Q ss_pred             ccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCC
Q 044550          557 LYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPL  636 (662)
Q Consensus       557 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l  636 (662)
                      +..+++|+.|+++.+......      ...+..+..+++|++|++++|.+..+|.++.  ++|++|+|++|... .+|.+
T Consensus       220 ~~~l~~L~~L~Ls~N~l~~~~------p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~-~~~~~  290 (310)
T 4glp_A          220 AAAGVQPHSLDLSHNSLRATV------NPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLN-RAPQP  290 (310)
T ss_dssp             HHHTCCCSSEECTTSCCCCCC------CSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCC-SCCCT
T ss_pred             HhcCCCCCEEECCCCCCCccc------hhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCC-CCchh
Confidence            345567777777766431100      0001222334799999999999888998875  89999999999743 44545


Q ss_pred             CCcccceeecccccCccEeCCcccC
Q 044550          637 GKLPLEKLQLKNLKSVKRVGNEFLG  661 (662)
Q Consensus       637 ~~LpL~~l~l~~l~~L~~~~n~~~g  661 (662)
                      ..+|       +++.|++.+|.|+.
T Consensus       291 ~~l~-------~L~~L~L~~N~l~~  308 (310)
T 4glp_A          291 DELP-------EVDNLTLDGNPFLV  308 (310)
T ss_dssp             TSCC-------CCSCEECSSTTTSC
T ss_pred             hhCC-------CccEEECcCCCCCC
Confidence            5555       44455566666653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.45  E-value=1.5e-13  Score=154.54  Aligned_cols=118  Identities=19%  Similarity=0.260  Sum_probs=72.0

Q ss_pred             cCCCceeEEEEecCCCCCccc-cccccccc----------c-cchHhhhcCcccccc---cccccccCc-ccCCCCccce
Q 044550          371 SFGDNVRHLGLNFQRGASFPM-SIHRFNRF----------S-ILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKY  434 (662)
Q Consensus       371 ~~~~~~r~l~l~~~~~~~~~~-~~~~l~~l----------~-~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~  434 (662)
                      ..+..+++|.+..+.+..+|. .+.++..|          + ..+..|.+++.|++|   +|.+..+|. .|.+|.+|++
T Consensus        49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~  128 (635)
T 4g8a_A           49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK  128 (635)
T ss_dssp             SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred             CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence            346788999999988886653 33333322          1 223345566666665   356666654 3566666666


Q ss_pred             eeecCCCCcccch-hhhcCCCccEEeccCCCCCc--cCCccccccccccEEecCCCcc
Q 044550          435 LNLSELRIERIPE-TLCELYNLQKLDIRGCQYLR--GLPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       435 L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~--~lP~~i~~L~~L~~L~l~~~~~  489 (662)
                      |+|++|.++.+|+ .+++|++|++|++++|. +.  .+|..++.+++|++|++++|..
T Consensus       129 L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          129 LVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             EECTTSCCCCSTTCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCCCChhhhhcCcccCeeccccCc-cccCCCchhhccchhhhhhcccCccc
Confidence            6666666666654 36666666677666665 33  2455666666677777666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.45  E-value=3.7e-14  Score=144.48  Aligned_cols=199  Identities=17%  Similarity=0.122  Sum_probs=140.7

Q ss_pred             cCcccccc---ccccc-ccCccc--CCCCccceeeecCCCCcccchhhhcC-----CCccEEeccCCCCCccCC-ccccc
Q 044550          408 KLVFLRAL---RNWIR-EIPENV--GKLIHLKYLNLSELRIERIPETLCEL-----YNLQKLDIRGCQYLRGLP-AGIRK  475 (662)
Q Consensus       408 ~l~~Lrvl---~~~~~-~lp~~i--~~l~~Lr~L~L~~~~i~~lp~~i~~L-----~~L~~L~l~~~~~l~~lP-~~i~~  475 (662)
                      .++.|+.+   +|.+. .+|..+  ..+++|++|+|++|.++.+|..++++     ++|++|++++|. +..+| ..++.
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~  171 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRV  171 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhcc
Confidence            45566665   56776 578876  88999999999999999889888888     999999999998 55555 78999


Q ss_pred             cccccEEecCCCccccc--cCCcC--CCCCCCCccCceeecCccCCCCccCccc-cccCcccCccccccCCCCCCCCChh
Q 044550          476 LMNMRSLLNDGTYLLKY--MPIGI--SRLTSLRTLEKFVVGGGVDGGGTCRLES-LKNLQLLRKCSIEGLKGLSNVSHVD  550 (662)
Q Consensus       476 L~~L~~L~l~~~~~~~~--~p~~i--~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~L~i~~~~~~~~~~~~~  550 (662)
                      +++|++|++++|.....  +|..+  +.+++|++|++  .++... ..+..... ...+++|+.|++++-.    +....
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L--~~N~l~-~~~~~~~~~~~~l~~L~~L~Ls~N~----l~~~~  244 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL--RNAGME-TPSGVCSALAAARVQLQGLDLSHNS----LRDAA  244 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEEC--TTSCCC-CHHHHHHHHHHTTCCCSEEECTTSC----CCSSC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEEC--CCCcCc-chHHHHHHHHhcCCCCCEEECCCCc----CCccc
Confidence            99999999999975443  34444  88999999964  333321 10111111 1344566666665431    11100


Q ss_pred             hhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          551 EVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       551 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                        ....+..+++|+.|+++.+...          .+...+.  ++|++|++++|....+|. +..+++|++|+|++|..
T Consensus       245 --~~~~~~~l~~L~~L~Ls~N~l~----------~ip~~~~--~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          245 --GAPSCDWPSQLNSLNLSFTGLK----------QVPKGLP--AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             --CCSCCCCCTTCCEEECTTSCCS----------SCCSSCC--SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             --chhhhhhcCCCCEEECCCCccC----------hhhhhcc--CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence              0123445689999999877531          1122222  799999999999998887 88999999999999974

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.43  E-value=1.6e-12  Score=143.87  Aligned_cols=205  Identities=18%  Similarity=0.136  Sum_probs=125.5

Q ss_pred             CCCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhc
Q 044550          372 FGDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCE  451 (662)
Q Consensus       372 ~~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~  451 (662)
                      ...+++.|.+..+.+..+|..             +.+++.|.+.+|.+..+|.   .+.+|++|++++|.++.+|..   
T Consensus        79 ~l~~L~~L~Ls~N~l~~lp~~-------------l~~L~~L~Ls~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---  139 (622)
T 3g06_A           79 LPPELRTLEVSGNQLTSLPVL-------------PPGLLELSIFSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---  139 (622)
T ss_dssp             CCTTCCEEEECSCCCSCCCCC-------------CTTCCEEEECSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---
T ss_pred             cCCCCCEEEcCCCcCCcCCCC-------------CCCCCEEECcCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---
Confidence            467899999999888776542             3444555555677777766   467788888888888877764   


Q ss_pred             CCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccC--
Q 044550          452 LYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNL--  529 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L--  529 (662)
                      +++|++|++++|. +..+|..   +.+|+.|++++|.. ..+|   ..+++|+.|++.  .+... ..+..+.+|..|  
T Consensus       140 l~~L~~L~Ls~N~-l~~l~~~---~~~L~~L~L~~N~l-~~l~---~~~~~L~~L~Ls--~N~l~-~l~~~~~~L~~L~L  208 (622)
T 3g06_A          140 PPGLQELSVSDNQ-LASLPAL---PSELCKLWAYNNQL-TSLP---MLPSGLQELSVS--DNQLA-SLPTLPSELYKLWA  208 (622)
T ss_dssp             CTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSCC-SCCC---CCCTTCCEEECC--SSCCS-CCCCCCTTCCEEEC
T ss_pred             CCCCCEEECcCCc-CCCcCCc---cCCCCEEECCCCCC-CCCc---ccCCCCcEEECC--CCCCC-CCCCccchhhEEEC
Confidence            4777888888776 6666653   34455555555543 3444   223444444321  11111 111111111111  


Q ss_pred             ------------cccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCc
Q 044550          530 ------------QLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVE  597 (662)
Q Consensus       530 ------------~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~  597 (662)
                                  .+|+.|.+++.    .+..++       ..+++|+.|+++.+....           +..  .+++|+
T Consensus       209 ~~N~l~~l~~~~~~L~~L~Ls~N----~L~~lp-------~~l~~L~~L~Ls~N~L~~-----------lp~--~~~~L~  264 (622)
T 3g06_A          209 YNNRLTSLPALPSGLKELIVSGN----RLTSLP-------VLPSELKELMVSGNRLTS-----------LPM--LPSGLL  264 (622)
T ss_dssp             CSSCCSSCCCCCTTCCEEECCSS----CCSCCC-------CCCTTCCEEECCSSCCSC-----------CCC--CCTTCC
T ss_pred             cCCcccccCCCCCCCCEEEccCC----ccCcCC-------CCCCcCcEEECCCCCCCc-----------CCc--ccccCc
Confidence                        23333333321    011111       344789999998775310           111  468999


Q ss_pred             EEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550          598 ELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       598 ~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~  630 (662)
                      .|++++|.+..+|.++..+++|+.|+|++|...
T Consensus       265 ~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          265 SLSVYRNQLTRLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             EEECCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred             EEeCCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence            999999999999999999999999999999854

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.42  E-value=2.3e-14  Score=147.70  Aligned_cols=201  Identities=14%  Similarity=0.134  Sum_probs=114.0

Q ss_pred             ccccccccccccCcccCCCCccceeeecCCCCcc--cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCc
Q 044550          411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIER--IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       411 ~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~  488 (662)
                      .|+.-++.+...+..+..+++|++|++++|.+..  +|..+.++++|++|++++|......|..+..+++|++|++++|.
T Consensus        74 ~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~  153 (336)
T 2ast_B           74 AFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS  153 (336)
T ss_dssp             EEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCB
T ss_pred             EEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCC
Confidence            3333345565555556677778888887777653  66777777778888887776333566667777778888877773


Q ss_pred             ccc--ccCCcCCCCCCCCccCceeecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          489 LLK--YMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       489 ~~~--~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      .+.  .+|..++.+++|++|++..+. ....  ......+..++ +|+.|.+.+...  .+..  ......+..+++|+.
T Consensus       154 ~l~~~~l~~~~~~~~~L~~L~l~~~~-~l~~--~~~~~~~~~l~~~L~~L~l~~~~~--~~~~--~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          154 GFSEFALQTLLSSCSRLDELNLSWCF-DFTE--KHVQVAVAHVSETITQLNLSGYRK--NLQK--SDLSTLVRRCPNLVH  226 (336)
T ss_dssp             SCCHHHHHHHHHHCTTCCEEECCCCT-TCCH--HHHHHHHHHSCTTCCEEECCSCGG--GSCH--HHHHHHHHHCTTCSE
T ss_pred             CCCHHHHHHHHhcCCCCCEEcCCCCC-CcCh--HHHHHHHHhcccCCCEEEeCCCcc--cCCH--HHHHHHHhhCCCCCE
Confidence            333  255556667777777643220 1100  00112234444 555555554410  1110  112223445677777


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc---ccccccCccEEEecCC
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK---WLTSLTNLRELKLSLC  627 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~---~i~~l~~L~~L~L~~~  627 (662)
                      |+++.+..+.        ...+..+..+++|++|++++|... .|.   .+..+++|++|+|++|
T Consensus       227 L~l~~~~~l~--------~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          227 LDLSDSVMLK--------NDCFQEFFQLNYLQHLSLSRCYDI-IPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             EECTTCTTCC--------GGGGGGGGGCTTCCEEECTTCTTC-CGGGGGGGGGCTTCCEEECTTS
T ss_pred             EeCCCCCcCC--------HHHHHHHhCCCCCCEeeCCCCCCC-CHHHHHHHhcCCCCCEEeccCc
Confidence            7776654211        122334455677888888777522 233   3556777888888777

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.41  E-value=1.7e-14  Score=151.85  Aligned_cols=38  Identities=18%  Similarity=0.129  Sum_probs=18.5

Q ss_pred             CCCCccceeeecCCCCcc-----cchhhhcCCCccEEeccCCC
Q 044550          427 GKLIHLKYLNLSELRIER-----IPETLCELYNLQKLDIRGCQ  464 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~  464 (662)
                      ..+++|++|+|++|.+..     +|..+.++++|++|++++|.
T Consensus        91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A           91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            344455555555554443     44444455555555555444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.39  E-value=4.5e-12  Score=135.86  Aligned_cols=113  Identities=19%  Similarity=0.229  Sum_probs=85.5

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      +..++.+.+..+.+..+|..             +.+++.|.+-+|.+..+|..   ..+|++|++++|.++.+| +++++
T Consensus        90 ~~~L~~L~l~~n~l~~lp~~-------------~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp-~~~~l  152 (454)
T 1jl5_A           90 PPHLESLVASCNSLTELPEL-------------PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP-ELQNS  152 (454)
T ss_dssp             CTTCSEEECCSSCCSSCCCC-------------CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC-CCTTC
T ss_pred             cCCCCEEEccCCcCCccccc-------------cCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc-ccCCC
Confidence            45677777766666555321             34444454446677666542   268999999999999999 69999


Q ss_pred             CCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550          453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK  508 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~  508 (662)
                      ++|++|++++|. +..+|..+   .+|++|++++|.. ..+| .++.+++|+.|++
T Consensus       153 ~~L~~L~l~~N~-l~~lp~~~---~~L~~L~L~~n~l-~~l~-~~~~l~~L~~L~l  202 (454)
T 1jl5_A          153 SFLKIIDVDNNS-LKKLPDLP---PSLEFIAAGNNQL-EELP-ELQNLPFLTAIYA  202 (454)
T ss_dssp             TTCCEEECCSSC-CSCCCCCC---TTCCEEECCSSCC-SSCC-CCTTCTTCCEEEC
T ss_pred             CCCCEEECCCCc-CcccCCCc---ccccEEECcCCcC-CcCc-cccCCCCCCEEEC
Confidence            999999999998 77788754   5899999999975 5677 6899999999864

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.39  E-value=1.2e-12  Score=130.49  Aligned_cols=167  Identities=22%  Similarity=0.194  Sum_probs=96.0

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      ++.+..++ .+..+++|++|++++|.++.+| .++++++|++|++++|. +..+|. .+..+++|++|++++|......|
T Consensus        50 ~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  126 (272)
T 3rfs_A           50 NSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVLVENQLQSLPD  126 (272)
T ss_dssp             TSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             CCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEECCCCcCCccCH
Confidence            44555543 4666777777777777777654 57777777777777776 555544 35677777777777776533333


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI  574 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  574 (662)
                      ..++.+++|++|++.  .+......+                                  ..+..+++|+.|+++.+...
T Consensus       127 ~~~~~l~~L~~L~L~--~n~l~~~~~----------------------------------~~~~~l~~L~~L~l~~n~l~  170 (272)
T 3rfs_A          127 GVFDKLTNLTYLNLA--HNQLQSLPK----------------------------------GVFDKLTNLTELDLSYNQLQ  170 (272)
T ss_dssp             TTTTTCTTCCEEECC--SSCCCCCCT----------------------------------TTTTTCTTCCEEECCSSCCC
T ss_pred             HHhccCCCCCEEECC--CCccCccCH----------------------------------HHhccCccCCEEECCCCCcC
Confidence            335667777766522  222111111                                  11233445555555544320


Q ss_pred             CCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc-cccccCccEEEecCCCCC
Q 044550          575 EGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW-LTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       575 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~-i~~l~~L~~L~L~~~~~~  630 (662)
                      .         .....+..+++|+.|++++|....+|.. +..+++|++|+|++|...
T Consensus       171 ~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          171 S---------LPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             C---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             c---------cCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            0         0012234556777777777776665543 457777888888777643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.38  E-value=5.2e-13  Score=133.08  Aligned_cols=119  Identities=27%  Similarity=0.352  Sum_probs=92.4

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchh-
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPET-  448 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-  448 (662)
                      ...++.+.+..+.+..++ .             +..++.|+.+   +|.+..++ .+..+++|++|++++|.++.+|+. 
T Consensus        40 l~~L~~L~l~~~~i~~~~-~-------------l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~  104 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQ-G-------------IQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGV  104 (272)
T ss_dssp             HTTCCEEECTTSCCCCCT-T-------------GGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTT
T ss_pred             ccceeeeeeCCCCccccc-c-------------cccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhH
Confidence            456777777776655442 1             4455556665   57777764 789999999999999999988765 


Q ss_pred             hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCC-cCCCCCCCCccCc
Q 044550          449 LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEK  508 (662)
Q Consensus       449 i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~  508 (662)
                      ++++++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|. .++.+++|+.|++
T Consensus       105 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQ-LQSLPDGVFDKLTNLTYLNLAHNQL-QSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             TTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEEC
T ss_pred             hcCCcCCCEEECCCCc-CCccCHHHhccCCCCCEEECCCCcc-CccCHHHhccCccCCEEEC
Confidence            6999999999999998 6666654 78999999999999976 45554 4688999999964

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.37  E-value=4.4e-12  Score=124.73  Aligned_cols=166  Identities=17%  Similarity=0.120  Sum_probs=107.8

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.+..+|..+.  .+|++|+|++|.+..+++ .++++++|++|++++|. +..+| ..+..+++|++|++++|......
T Consensus        23 ~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~   99 (251)
T 3m19_A           23 GKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLP   99 (251)
T ss_dssp             TCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred             CCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccC
Confidence            456777777665  578888888888887754 68888888888888887 54444 45788888888888888764333


Q ss_pred             CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCC
Q 044550          494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGD  573 (662)
Q Consensus       494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~  573 (662)
                      |..++.+++|++|++.  .+......+.                                  .+..+.+|+.|+++.+..
T Consensus       100 ~~~~~~l~~L~~L~L~--~N~l~~~~~~----------------------------------~~~~l~~L~~L~Ls~N~l  143 (251)
T 3m19_A          100 LGVFDHLTQLDKLYLG--GNQLKSLPSG----------------------------------VFDRLTKLKELRLNTNQL  143 (251)
T ss_dssp             TTTTTTCTTCCEEECC--SSCCCCCCTT----------------------------------TTTTCTTCCEEECCSSCC
T ss_pred             hhHhcccCCCCEEEcC--CCcCCCcChh----------------------------------HhccCCcccEEECcCCcC
Confidence            3456777777777532  2221100000                                  122334455555544422


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~  629 (662)
                      ..         .....+..+++|+.|++++|....+|. .+..+++|++|+|++|..
T Consensus       144 ~~---------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          144 QS---------IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CC---------CCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             Cc---------cCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCce
Confidence            00         001234556789999999988877765 567889999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.35  E-value=5.9e-14  Score=144.66  Aligned_cols=223  Identities=16%  Similarity=0.162  Sum_probs=157.8

Q ss_pred             cccCCC--CccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEecCCCccccccCCcCCCC
Q 044550          424 ENVGKL--IHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLLNDGTYLLKYMPIGISRL  500 (662)
Q Consensus       424 ~~i~~l--~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L  500 (662)
                      ..+..+  .++++|++++|.+...+..+.++.+|++|++++|..... +|..+..+++|++|++++|......|..++.+
T Consensus        62 ~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~  141 (336)
T 2ast_B           62 DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKN  141 (336)
T ss_dssp             HHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTC
T ss_pred             HHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcC
Confidence            334455  789999999999998888889999999999999983323 78888999999999999997655777888999


Q ss_pred             CCCCccCceeecCccCCCCccCcc-ccccCcccCccccccCCCCCCCCChhhhhhccccccc-cCCcEEEEecCCCCCCC
Q 044550          501 TSLRTLEKFVVGGGVDGGGTCRLE-SLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKK-NLLRLGLQFGGDIEGRR  578 (662)
Q Consensus       501 ~~L~~L~~~~~~~~~~~~~~~~l~-~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~  578 (662)
                      ++|++|++..+. ...   ...+. .+..+++|+.|.+.++   ..+..  ......+..++ +|+.|+++.+..     
T Consensus       142 ~~L~~L~L~~~~-~l~---~~~l~~~~~~~~~L~~L~l~~~---~~l~~--~~~~~~~~~l~~~L~~L~l~~~~~-----  207 (336)
T 2ast_B          142 SNLVRLNLSGCS-GFS---EFALQTLLSSCSRLDELNLSWC---FDFTE--KHVQVAVAHVSETITQLNLSGYRK-----  207 (336)
T ss_dssp             TTCSEEECTTCB-SCC---HHHHHHHHHHCTTCCEEECCCC---TTCCH--HHHHHHHHHSCTTCCEEECCSCGG-----
T ss_pred             CCCCEEECCCCC-CCC---HHHHHHHHhcCCCCCEEcCCCC---CCcCh--HHHHHHHHhcccCCCEEEeCCCcc-----
Confidence            999999743321 110   11122 2455667777777765   22221  11233456778 999999987631     


Q ss_pred             CchhHHHHhhhCCCCCCCcEEEEeecCC-C-CCCcccccccCccEEEecCCCCCC--CCCCCCCcc-cceeecc------
Q 044550          579 KNEKDKQLLEALQPPLNVEELEIESYRG-N-IFPKWLTSLTNLRELKLSLCVNCE--HLPPLGKLP-LEKLQLK------  647 (662)
Q Consensus       579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~-~-~lP~~i~~l~~L~~L~L~~~~~~~--~lp~l~~Lp-L~~l~l~------  647 (662)
                       ......+...+..+++|+.|++++|.. . ..|..+..+++|++|+|++|....  .+..++.+| |+.|++.      
T Consensus       208 -~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~i~~~  286 (336)
T 2ast_B          208 -NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDG  286 (336)
T ss_dssp             -GSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTT
T ss_pred             -cCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCccCHH
Confidence             011233344455678999999999983 2 456688899999999999996332  233477888 9988874      


Q ss_pred             -------cccCccEeCCcccC
Q 044550          648 -------NLKSVKRVGNEFLG  661 (662)
Q Consensus       648 -------~l~~L~~~~n~~~g  661 (662)
                             .|+.|++.+|.|+|
T Consensus       287 ~~~~l~~~l~~L~l~~n~l~~  307 (336)
T 2ast_B          287 TLQLLKEALPHLQINCSHFTT  307 (336)
T ss_dssp             CHHHHHHHSTTSEESCCCSCC
T ss_pred             HHHHHHhhCcceEEecccCcc
Confidence                   36677777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.34  E-value=2.8e-12  Score=141.77  Aligned_cols=171  Identities=19%  Similarity=0.204  Sum_probs=104.8

Q ss_pred             CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL  506 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L  506 (662)
                      ..|.+|++|++++|.+..+| .++.|++|+.|+|++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~l-~~l~-~l~~l~~L~~L  114 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKI-KDLS-SLKDLKKLKSL  114 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSCC-CCCT-TSTTCTTCCEE
T ss_pred             hcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCCC-CCCh-hhccCCCCCEE
Confidence            44566666666666666665 46666666666666665 555554 66666666666666643 3333 46666666666


Q ss_pred             CceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHH
Q 044550          507 EKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQL  586 (662)
Q Consensus       507 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  586 (662)
                      ++.  .+..     ..+..+..|++|+.|.+++.    .+...     ..+..+++|+.|+|+.+....           
T Consensus       115 ~Ls--~N~l-----~~l~~l~~l~~L~~L~Ls~N----~l~~l-----~~l~~l~~L~~L~Ls~N~l~~-----------  167 (605)
T 1m9s_A          115 SLE--HNGI-----SDINGLVHLPQLESLYLGNN----KITDI-----TVLSRLTKLDTLSLEDNQISD-----------  167 (605)
T ss_dssp             ECT--TSCC-----CCCGGGGGCTTCSEEECCSS----CCCCC-----GGGGSCTTCSEEECCSSCCCC-----------
T ss_pred             Eec--CCCC-----CCCccccCCCccCEEECCCC----ccCCc-----hhhcccCCCCEEECcCCcCCC-----------
Confidence            422  2221     11233445555555555543    11111     235667788888887664310           


Q ss_pred             hhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550          587 LEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       587 l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~  630 (662)
                      +..+..+++|+.|+|++|.+..+| .+..+++|+.|+|++|...
T Consensus       168 ~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          168 IVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEE
T ss_pred             chhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCc
Confidence            111566788999999999887765 5788999999999998743

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.34  E-value=2.6e-12  Score=129.23  Aligned_cols=167  Identities=19%  Similarity=0.210  Sum_probs=79.3

Q ss_pred             CCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550          429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK  508 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~  508 (662)
                      +.+|++|++++|.++.+|. +..+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| .++.+++|+.|++
T Consensus        45 l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~-l~~l~~L~~L~l~~n~l-~~~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEEC
T ss_pred             cCcccEEEccCCCcccChh-HhcCCCCCEEEccCCc-cCCCcc-cccCCCCCEEECCCCcC-CCCh-hhccCCCCCEEEC
Confidence            4444444444444444432 4444444444444444 333433 44444444444444432 2222 2444444444432


Q ss_pred             eeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhh
Q 044550          509 FVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE  588 (662)
Q Consensus       509 ~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  588 (662)
                      .  .+..     ..+..+..+++|+.|.+++.    .+...     ..+..+++|+.|+++.+....           ..
T Consensus       120 ~--~n~i-----~~~~~l~~l~~L~~L~l~~n----~l~~~-----~~l~~l~~L~~L~L~~N~l~~-----------~~  172 (291)
T 1h6t_A          120 E--HNGI-----SDINGLVHLPQLESLYLGNN----KITDI-----TVLSRLTKLDTLSLEDNQISD-----------IV  172 (291)
T ss_dssp             T--TSCC-----CCCGGGGGCTTCCEEECCSS----CCCCC-----GGGGGCTTCSEEECCSSCCCC-----------CG
T ss_pred             C--CCcC-----CCChhhcCCCCCCEEEccCC----cCCcc-----hhhccCCCCCEEEccCCcccc-----------ch
Confidence            1  1111     01122333333444333332    01111     124455666666666553200           01


Q ss_pred             hCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          589 ALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       589 ~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      .+..+++|+.|++++|....+| .+..+++|+.|++++|.
T Consensus       173 ~l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          173 PLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             GGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEE
T ss_pred             hhcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCc
Confidence            1455677778888777777665 36677788888888776

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.34  E-value=1.3e-12  Score=127.51  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=118.0

Q ss_pred             cCcccccccccccccCc-ccCCCCccceeeecCCC-Ccccch-hhhcCCCccEEeccC-CCCCccCCc-cccccccccEE
Q 044550          408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELR-IERIPE-TLCELYNLQKLDIRG-CQYLRGLPA-GIRKLMNMRSL  482 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~-i~~lp~-~i~~L~~L~~L~l~~-~~~l~~lP~-~i~~L~~L~~L  482 (662)
                      +++.|.+-++.++.+|. .+..+++|++|++++|. ++.+|+ .+.++++|++|++++ |. +..+|. .+..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~-l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRN-LTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETT-CCEECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCC-eeEcCHHHhCCCCCCCEE
Confidence            34444444566666655 56777888888888886 777765 577788888888877 44 666653 56777888888


Q ss_pred             ecCCCccccccCCcCCCCCCCC---ccCceeecC-ccCCCCccCccccccCcccC-ccccccCCCCCCCCChhhhhhccc
Q 044550          483 LNDGTYLLKYMPIGISRLTSLR---TLEKFVVGG-GVDGGGTCRLESLKNLQLLR-KCSIEGLKGLSNVSHVDEVERLQL  557 (662)
Q Consensus       483 ~l~~~~~~~~~p~~i~~L~~L~---~L~~~~~~~-~~~~~~~~~l~~L~~L~~L~-~L~i~~~~~~~~~~~~~~~~~~~l  557 (662)
                      ++++|.. ..+|. ++.+++|+   .|++  .++ ......+..+   ..+++|+ .+.+.+-    .+..   .....+
T Consensus       111 ~l~~n~l-~~lp~-~~~l~~L~~L~~L~l--~~N~~l~~i~~~~~---~~l~~L~~~L~l~~n----~l~~---i~~~~~  176 (239)
T 2xwt_C          111 GIFNTGL-KMFPD-LTKVYSTDIFFILEI--TDNPYMTSIPVNAF---QGLCNETLTLKLYNN----GFTS---VQGYAF  176 (239)
T ss_dssp             EEEEECC-CSCCC-CTTCCBCCSEEEEEE--ESCTTCCEECTTTT---TTTBSSEEEEECCSC----CCCE---ECTTTT
T ss_pred             eCCCCCC-ccccc-cccccccccccEEEC--CCCcchhhcCcccc---cchhcceeEEEcCCC----CCcc---cCHhhc
Confidence            8877764 45665 77777776   5542  222 2211111223   3334444 4443321    0111   111112


Q ss_pred             cccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCC-CCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPP-LNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       558 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~-~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                      .. .+|+.|+++.+..+..        .....+... ++|+.|++++|....+|..  .+++|+.|.+++|.
T Consensus       177 ~~-~~L~~L~L~~n~~l~~--------i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          177 NG-TKLDAVYLNKNKYLTV--------IDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             TT-CEEEEEECTTCTTCCE--------ECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             CC-CCCCEEEcCCCCCccc--------CCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            22 5777777766531110        011234556 8999999999999888876  78999999999875

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.31  E-value=6.2e-14  Score=147.50  Aligned_cols=239  Identities=17%  Similarity=0.147  Sum_probs=162.2

Q ss_pred             HhhhcCcccccc---cccccc-----cCcccCCCCccceeeecCCCCc----ccchhh-------hcCCCccEEeccCCC
Q 044550          404 ELFSKLVFLRAL---RNWIRE-----IPENVGKLIHLKYLNLSELRIE----RIPETL-------CELYNLQKLDIRGCQ  464 (662)
Q Consensus       404 ~~~~~l~~Lrvl---~~~~~~-----lp~~i~~l~~Lr~L~L~~~~i~----~lp~~i-------~~L~~L~~L~l~~~~  464 (662)
                      ..+..++.|+.+   +|.+..     ++..+..+++|++|+|++|.+.    .+|..+       .++++|++|++++|.
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~  105 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  105 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc
Confidence            335566666666   455543     4556788999999999998655    345554       789999999999998


Q ss_pred             CCcc-----CCccccccccccEEecCCCccccc----cCCcCCCC---------CCCCccCceeecCccC-CCCccCccc
Q 044550          465 YLRG-----LPAGIRKLMNMRSLLNDGTYLLKY----MPIGISRL---------TSLRTLEKFVVGGGVD-GGGTCRLES  525 (662)
Q Consensus       465 ~l~~-----lP~~i~~L~~L~~L~l~~~~~~~~----~p~~i~~L---------~~L~~L~~~~~~~~~~-~~~~~~l~~  525 (662)
                       +..     +|..+..+++|++|++++|.....    ++..+..+         ++|++|++.  .+... ...+.....
T Consensus       106 -l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~--~n~l~~~~~~~l~~~  182 (386)
T 2ca6_A          106 -FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--RNRLENGSMKEWAKT  182 (386)
T ss_dssp             -CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC--SSCCTGGGHHHHHHH
T ss_pred             -CCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC--CCCCCcHHHHHHHHH
Confidence             544     788899999999999999976322    23333334         788888643  33321 011111124


Q ss_pred             cccCcccCccccccCCCCCCCC--ChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEee
Q 044550          526 LKNLQLLRKCSIEGLKGLSNVS--HVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIES  603 (662)
Q Consensus       526 L~~L~~L~~L~i~~~~~~~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~  603 (662)
                      +..+++|+.|.+.+.    .+.  .........+..+++|+.|+++++..     .......+...+..+++|++|++++
T Consensus       183 l~~~~~L~~L~L~~n----~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l-----~~~g~~~l~~~l~~~~~L~~L~L~~  253 (386)
T 2ca6_A          183 FQSHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLND  253 (386)
T ss_dssp             HHHCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             HHhCCCcCEEECcCC----CCCHhHHHHHHHHHhhcCCCccEEECcCCCC-----CcHHHHHHHHHHccCCCcCEEECCC
Confidence            556667777777664    112  11123333677889999999988753     1111244556777889999999999


Q ss_pred             cCCCC-----CCcccc--cccCccEEEecCCCCCCCCCCCCC-----cc-cceeecccccCccEeCCcccC
Q 044550          604 YRGNI-----FPKWLT--SLTNLRELKLSLCVNCEHLPPLGK-----LP-LEKLQLKNLKSVKRVGNEFLG  661 (662)
Q Consensus       604 ~~~~~-----lP~~i~--~l~~L~~L~L~~~~~~~~lp~l~~-----Lp-L~~l~l~~l~~L~~~~n~~~g  661 (662)
                      |....     +|.++.  .+++|++|+|++|.       ++.     +| ...-++.+++.|++.+|.|++
T Consensus       254 n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-------i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          254 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-------IELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-------CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CCCchhhHHHHHHHHhhccCCCeEEEECcCCc-------CCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            98654     356664  38999999999997       444     67 433457889999999999886

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.31  E-value=4.6e-12  Score=119.60  Aligned_cols=78  Identities=22%  Similarity=0.274  Sum_probs=63.9

Q ss_pred             CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL  506 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L  506 (662)
                      ..+++|++|++++|.++.+| .+..+++|++|++++|. +..+| .+..+++|++|++++|......|..++.+++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~-~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIH-ATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCC-CSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCC-CCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            56788999999999998888 68899999999999885 66554 68889999999999987655567778888888877


Q ss_pred             C
Q 044550          507 E  507 (662)
Q Consensus       507 ~  507 (662)
                      +
T Consensus       118 ~  118 (197)
T 4ezg_A          118 D  118 (197)
T ss_dssp             E
T ss_pred             E
Confidence            5

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.31  E-value=3.4e-12  Score=132.15  Aligned_cols=217  Identities=20%  Similarity=0.199  Sum_probs=115.7

Q ss_pred             cCcccccccccccccCc-ccCCCCccceeeecCCCCc-ccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEe
Q 044550          408 KLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIE-RIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLL  483 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~-~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~  483 (662)
                      +++.|..-+|.++.+|. .|.+|++|++|+|++|.+. .+|. .+.+|.+|+.+.+.++..+..+ |..+..+++|++|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~  110 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL  110 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccccc
Confidence            34444444566666654 3566777777777777653 3443 3566666655433332235555 34456677777777


Q ss_pred             cCCCccccccCC-cCCCCCCCCccCceeecCccCCC-CccCccccccCcccCccccccCCCCCCCCChhhhhhccccccc
Q 044550          484 NDGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGG-GTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKK  561 (662)
Q Consensus       484 l~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~-~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~  561 (662)
                      +++|.. ..+|. .+....++..|+  ..++..... ....+..+.  ..++.|.+.+-    .+.   .+. .......
T Consensus       111 l~~n~l-~~~~~~~~~~~~~l~~l~--l~~~~~i~~l~~~~f~~~~--~~l~~L~L~~N----~i~---~i~-~~~f~~~  177 (350)
T 4ay9_X          111 ISNTGI-KHLPDVHKIHSLQKVLLD--IQDNINIHTIERNSFVGLS--FESVILWLNKN----GIQ---EIH-NSAFNGT  177 (350)
T ss_dssp             EEEECC-SSCCCCTTCCBSSCEEEE--EESCTTCCEECTTSSTTSB--SSCEEEECCSS----CCC---EEC-TTSSTTE
T ss_pred             cccccc-ccCCchhhcccchhhhhh--hccccccccccccchhhcc--hhhhhhccccc----ccc---CCC-hhhcccc
Confidence            766654 33332 233333444443  111111000 011111111  11222222210    001   110 1112334


Q ss_pred             cCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-
Q 044550          562 NLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-  640 (662)
Q Consensus       562 ~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-  640 (662)
                      +|+.|.+..+..+...        ..+.+..+++|+.|++++|.+..+|.+  .+.+|++|.+.+|..++.+|.+..|+ 
T Consensus       178 ~L~~l~l~~~n~l~~i--------~~~~f~~l~~L~~LdLs~N~l~~lp~~--~~~~L~~L~~l~~~~l~~lP~l~~l~~  247 (350)
T 4ay9_X          178 QLDELNLSDNNNLEEL--------PNDVFHGASGPVILDISRTRIHSLPSY--GLENLKKLRARSTYNLKKLPTLEKLVA  247 (350)
T ss_dssp             EEEEEECTTCTTCCCC--------CTTTTTTEECCSEEECTTSCCCCCCSS--SCTTCCEEECTTCTTCCCCCCTTTCCS
T ss_pred             chhHHhhccCCcccCC--------CHHHhccCcccchhhcCCCCcCccChh--hhccchHhhhccCCCcCcCCCchhCcC
Confidence            5666666543321100        012346678999999999999999975  47889999999998889999999999 


Q ss_pred             cceeecc
Q 044550          641 LEKLQLK  647 (662)
Q Consensus       641 L~~l~l~  647 (662)
                      |+.+.+.
T Consensus       248 L~~l~l~  254 (350)
T 4ay9_X          248 LMEASLT  254 (350)
T ss_dssp             CCEEECS
T ss_pred             hhhCcCC
Confidence            9988875

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.28  E-value=7e-12  Score=127.46  Aligned_cols=203  Identities=16%  Similarity=0.066  Sum_probs=134.1

Q ss_pred             cCccccccccccc-ccCccc--CCCCccceeeecCCCCccc-c----hhhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550          408 KLVFLRALRNWIR-EIPENV--GKLIHLKYLNLSELRIERI-P----ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM  479 (662)
Q Consensus       408 ~l~~Lrvl~~~~~-~lp~~i--~~l~~Lr~L~L~~~~i~~l-p----~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L  479 (662)
                      +++.|.+-+|.+. ..|..+  ..+++|++|+|++|.+... |    ..+..+++|++|++++|......|..++.+++|
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L  171 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPAL  171 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTC
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCC
Confidence            3444444466665 456666  8899999999999998852 2    345679999999999999444445688999999


Q ss_pred             cEEecCCCccccc--c--CCcCCCCCCCCccCceeecCccCCCCccCccc-cccCcccCccccccCCCCCCCCChhhhhh
Q 044550          480 RSLLNDGTYLLKY--M--PIGISRLTSLRTLEKFVVGGGVDGGGTCRLES-LKNLQLLRKCSIEGLKGLSNVSHVDEVER  554 (662)
Q Consensus       480 ~~L~l~~~~~~~~--~--p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~-L~~L~~L~~L~i~~~~~~~~~~~~~~~~~  554 (662)
                      ++|++++|.....  +  +..++.+++|++|++.  ++... ..+..... +..+++|+.|.+++-.    +........
T Consensus       172 ~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls--~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~----l~~~~p~~~  244 (310)
T 4glp_A          172 TSLDLSDNPGLGERGLMAALCPHKFPAIQNLALR--NTGME-TPTGVCAALAAAGVQPHSLDLSHNS----LRATVNPSA  244 (310)
T ss_dssp             CEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCC--SSCCC-CHHHHHHHHHHHTCCCSSEECTTSC----CCCCCCSCC
T ss_pred             CEEECCCCCCccchhhhHHHhhhcCCCCCEEECC--CCCCC-chHHHHHHHHhcCCCCCEEECCCCC----CCccchhhH
Confidence            9999999975331  3  2335789999999743  33321 11111111 2455666666665531    111100001


Q ss_pred             ccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCC
Q 044550          555 LQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       555 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~  630 (662)
                      ..+...++|+.|+++.+...          .+...+  +++|+.|++++|....+|. +..+++|+.|+|++|...
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~----------~lp~~~--~~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLE----------QVPKGL--PAKLRVLDLSSNRLNRAPQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCC----------SCCSCC--CSCCSCEECCSCCCCSCCC-TTSCCCCSCEECSSTTTS
T ss_pred             HhccCcCcCCEEECCCCCCC----------chhhhh--cCCCCEEECCCCcCCCCch-hhhCCCccEEECcCCCCC
Confidence            11223379999999887641          112222  3799999999999888876 678999999999999743

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.26  E-value=4.5e-11  Score=117.43  Aligned_cols=118  Identities=24%  Similarity=0.317  Sum_probs=87.3

Q ss_pred             eeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccC-cccCCCCccceeeecCCCCcccch-hhhcCC
Q 044550          376 VRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERIPE-TLCELY  453 (662)
Q Consensus       376 ~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~  453 (662)
                      .+.+.+....+..+|..+            ...++.|.+-++.+..++ ..+.++++|++|+|++|.++.+++ .+.+++
T Consensus        16 ~~~l~~~~~~l~~~p~~~------------~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~   83 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGI------------PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT   83 (251)
T ss_dssp             GTEEECTTCCCSSCCSCC------------CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT
T ss_pred             CeEEecCCCCccccCCCC------------CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC
Confidence            345555555555555433            234455555567777764 468889999999999999998765 578999


Q ss_pred             CccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCc-CCCCCCCCccC
Q 044550          454 NLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLRTLE  507 (662)
Q Consensus       454 ~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~~L~  507 (662)
                      +|++|++++|. +..+|. .+..+++|++|++++|.. ..+|.. ++.+++|++|+
T Consensus        84 ~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~  137 (251)
T 3m19_A           84 ELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELR  137 (251)
T ss_dssp             TCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred             cCCEEECCCCc-ccccChhHhcccCCCCEEEcCCCcC-CCcChhHhccCCcccEEE
Confidence            99999999998 666664 568899999999999976 555554 68888998886

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.26  E-value=1.1e-11  Score=135.55  Aligned_cols=182  Identities=16%  Similarity=0.100  Sum_probs=111.2

Q ss_pred             ccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccc
Q 044550          411 FLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLL  490 (662)
Q Consensus       411 ~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~  490 (662)
                      .|..-++.+..+|..+.  ++|++|+|++|.++.+|   +.+++|++|++++|. +..+|. +.+  +|++|++++|.. 
T Consensus        63 ~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~--~L~~L~Ls~N~l-  132 (571)
T 3cvr_A           63 ELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNR-LSTLPE-LPA--SLKHLDVDNNQL-  132 (571)
T ss_dssp             EEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSC-CSCCCC-CCT--TCCEEECCSSCC-
T ss_pred             EEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCC-CCCcch-hhc--CCCEEECCCCcC-
Confidence            33333556666776663  67888888888877777   456778888888776 666777 554  788888877764 


Q ss_pred             cccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEe
Q 044550          491 KYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQF  570 (662)
Q Consensus       491 ~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~  570 (662)
                      ..+|.   .+++|+.|++  .++....     +..  .+++|+.|.+++..    +..++.     +.  ++|+.|+++.
T Consensus       133 ~~lp~---~l~~L~~L~L--s~N~l~~-----lp~--~l~~L~~L~Ls~N~----L~~lp~-----l~--~~L~~L~Ls~  189 (571)
T 3cvr_A          133 TMLPE---LPALLEYINA--DNNQLTM-----LPE--LPTSLEVLSVRNNQ----LTFLPE-----LP--ESLEALDVST  189 (571)
T ss_dssp             SCCCC---CCTTCCEEEC--CSSCCSC-----CCC--CCTTCCEEECCSSC----CSCCCC-----CC--TTCCEEECCS
T ss_pred             CCCCC---cCccccEEeC--CCCccCc-----CCC--cCCCcCEEECCCCC----CCCcch-----hh--CCCCEEECcC
Confidence            44666   5677777753  2332211     111  23445555544421    111111     22  6788888877


Q ss_pred             cCCCCCCCCchhHHHHhhh-CCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCC
Q 044550          571 GGDIEGRRKNEKDKQLLEA-LQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEH  632 (662)
Q Consensus       571 ~~~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~  632 (662)
                      +.......       +... ..+++.|+.|++++|.+..+|.++..+++|++|+|++|.....
T Consensus       190 N~L~~lp~-------~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~  245 (571)
T 3cvr_A          190 NLLESLPA-------VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSR  245 (571)
T ss_dssp             SCCSSCCC-------CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred             CCCCchhh-------HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCc
Confidence            65310000       0001 1222344999999999999999999999999999999986543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.24  E-value=1.7e-11  Score=121.29  Aligned_cols=157  Identities=18%  Similarity=0.131  Sum_probs=111.8

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      .+.+..++ .+..+.+|++|++++|.++.+| .++.+++|++|++++|. +..+|. +..+++|++|++++|.. ..+|.
T Consensus        28 ~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~-l~~l~~L~~L~L~~N~l-~~l~~  102 (263)
T 1xeu_A           28 KQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQ-ISDLSP-LKDLTKLEELSVNRNRL-KNLNG  102 (263)
T ss_dssp             CSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-SCCTT
T ss_pred             CCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCc-cCCChh-hccCCCCCEEECCCCcc-CCcCc
Confidence            45677766 5778899999999999999887 78899999999999987 777877 88999999999999865 55554


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      ...  ++|+.|++.  ++..     ..+..                               +..+++|+.|+++.+... 
T Consensus       103 ~~~--~~L~~L~L~--~N~l-----~~~~~-------------------------------l~~l~~L~~L~Ls~N~i~-  141 (263)
T 1xeu_A          103 IPS--ACLSRLFLD--NNEL-----RDTDS-------------------------------LIHLKNLEILSIRNNKLK-  141 (263)
T ss_dssp             CCC--SSCCEEECC--SSCC-----SBSGG-------------------------------GTTCTTCCEEECTTSCCC-
T ss_pred             ccc--CcccEEEcc--CCcc-----CCChh-------------------------------hcCcccccEEECCCCcCC-
Confidence            322  666666422  2211     01111                               334455555655544320 


Q ss_pred             CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCC
Q 044550          576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~  629 (662)
                          .      +..+..+++|+.|++++|....+ ..+..+++|+.|++++|..
T Consensus       142 ----~------~~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          142 ----S------IVMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             ----B------CGGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             ----C------ChHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence                0      12345578999999999998776 5778999999999999974

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.24  E-value=2.3e-11  Score=125.87  Aligned_cols=212  Identities=17%  Similarity=0.167  Sum_probs=133.3

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccccc-
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYM-  493 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~-  493 (662)
                      +.++++|..+.  .++++|+|++|.|+.+|+ .+.+|++|++|+|++|...+.+|. .+.++++|..+...++..+..+ 
T Consensus        19 ~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~   96 (350)
T 4ay9_X           19 SKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN   96 (350)
T ss_dssp             TTCCSCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC
T ss_pred             CCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC
Confidence            46888888773  689999999999999987 589999999999999996676775 4688999887555443334555 


Q ss_pred             CCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccc-ccCCcEEEEecC
Q 044550          494 PIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK-KNLLRLGLQFGG  572 (662)
Q Consensus       494 p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~  572 (662)
                      |..++.+++|+.|++....  .....+.......   ++..+.+....   .+.   .+....+..+ ..++.|+++.+.
T Consensus        97 ~~~f~~l~~L~~L~l~~n~--l~~~~~~~~~~~~---~l~~l~l~~~~---~i~---~l~~~~f~~~~~~l~~L~L~~N~  165 (350)
T 4ay9_X           97 PEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSL---QKVLLDIQDNI---NIH---TIERNSFVGLSFESVILWLNKNG  165 (350)
T ss_dssp             TTSBCCCTTCCEEEEEEEC--CSSCCCCTTCCBS---SCEEEEEESCT---TCC---EECTTSSTTSBSSCEEEECCSSC
T ss_pred             chhhhhccccccccccccc--cccCCchhhcccc---hhhhhhhcccc---ccc---cccccchhhcchhhhhhcccccc
Confidence            5668999999999754332  2111111111111   12223333221   111   1111122232 356777777654


Q ss_pred             CCCCCCCchhHHHHhhhCCCCCCCcEEEEee-cCCCCCCcc-cccccCccEEEecCCCCCCCCCCCCCcc-cceeecccc
Q 044550          573 DIEGRRKNEKDKQLLEALQPPLNVEELEIES-YRGNIFPKW-LTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL  649 (662)
Q Consensus       573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~-~~~~~lP~~-i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l  649 (662)
                      ..          .+........+|++|.+.+ +....+|.. +..+++|++|+|++|. .+.+|. +.+. |+.|.+.++
T Consensus       166 i~----------~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~-~~~~~L~~L~~l~~  233 (350)
T 4ay9_X          166 IQ----------EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPS-YGLENLKKLRARST  233 (350)
T ss_dssp             CC----------EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCS-SSCTTCCEEECTTC
T ss_pred             cc----------CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccCh-hhhccchHhhhccC
Confidence            30          1122333456899999975 667788864 5799999999999996 456664 3344 555554444


Q ss_pred             cCcc
Q 044550          650 KSVK  653 (662)
Q Consensus       650 ~~L~  653 (662)
                      ..++
T Consensus       234 ~~l~  237 (350)
T 4ay9_X          234 YNLK  237 (350)
T ss_dssp             TTCC
T ss_pred             CCcC
Confidence            4433

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.23  E-value=3.4e-11  Score=121.05  Aligned_cols=173  Identities=21%  Similarity=0.179  Sum_probs=116.1

Q ss_pred             hcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550          407 SKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG  486 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~  486 (662)
                      .+++.|.+-++.+..++ .+..+++|++|++++|.++.+|+ ++++++|++|++++|. +..+|. +..+++|++|++++
T Consensus        46 ~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~  121 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEH  121 (291)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGGG-GTTCTTCCEEECTT
T ss_pred             CcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc-CCCChh-hccCCCCCEEECCC
Confidence            33444444356666664 47778888888888888888876 8888888888888887 666654 88888888888888


Q ss_pred             CccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550          487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL  566 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  566 (662)
                      |.. ..+ +.++.+++|+.|++.  .+..     ..+..+..+++|+.|.+++.    .+....   .  +..+++|+.|
T Consensus       122 n~i-~~~-~~l~~l~~L~~L~l~--~n~l-----~~~~~l~~l~~L~~L~L~~N----~l~~~~---~--l~~l~~L~~L  183 (291)
T 1h6t_A          122 NGI-SDI-NGLVHLPQLESLYLG--NNKI-----TDITVLSRLTKLDTLSLEDN----QISDIV---P--LAGLTKLQNL  183 (291)
T ss_dssp             SCC-CCC-GGGGGCTTCCEEECC--SSCC-----CCCGGGGGCTTCSEEECCSS----CCCCCG---G--GTTCTTCCEE
T ss_pred             CcC-CCC-hhhcCCCCCCEEEcc--CCcC-----CcchhhccCCCCCEEEccCC----ccccch---h--hcCCCccCEE
Confidence            865 444 457778888888633  2322     12345556666666666553    112211   1  6677888999


Q ss_pred             EEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550          567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW  612 (662)
Q Consensus       567 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~  612 (662)
                      +++.+...           .+..+..+++|+.|++++|.....|..
T Consensus       184 ~L~~N~i~-----------~l~~l~~l~~L~~L~l~~n~i~~~~~~  218 (291)
T 1h6t_A          184 YLSKNHIS-----------DLRALAGLKNLDVLELFSQECLNKPIN  218 (291)
T ss_dssp             ECCSSCCC-----------BCGGGTTCTTCSEEEEEEEEEECCCEE
T ss_pred             ECCCCcCC-----------CChhhccCCCCCEEECcCCcccCCccc
Confidence            88876531           023466788999999999886665543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.21  E-value=3.1e-11  Score=131.97  Aligned_cols=177  Identities=18%  Similarity=0.182  Sum_probs=122.2

Q ss_pred             ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCcee
Q 044550          431 HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV  510 (662)
Q Consensus       431 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~  510 (662)
                      +|++|++++|.++.+|..+.  ++|++|++++|. +..+|   ..+++|++|++++|.. ..+|. ++.  +|+.|++  
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~-l~~ip---~~l~~L~~L~Ls~N~l-~~ip~-l~~--~L~~L~L--  127 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNA-LISLP---ELPASLEYLDACDNRL-STLPE-LPA--SLKHLDV--  127 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSC-CSCCC---CCCTTCCEEECCSSCC-SCCCC-CCT--TCCEEEC--
T ss_pred             CccEEEeCCCCCCccCHhHc--CCCCEEECcCCC-Ccccc---cccCCCCEEEccCCCC-CCcch-hhc--CCCEEEC--
Confidence            89999999999999999774  899999999998 78899   4689999999999976 56888 665  8888863  


Q ss_pred             ecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhC
Q 044550          511 VGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEAL  590 (662)
Q Consensus       511 ~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l  590 (662)
                      .+|....     +..  .+++|+.|.+++..    +..++.       .+++|+.|+++.+....          +.. +
T Consensus       128 s~N~l~~-----lp~--~l~~L~~L~Ls~N~----l~~lp~-------~l~~L~~L~Ls~N~L~~----------lp~-l  178 (571)
T 3cvr_A          128 DNNQLTM-----LPE--LPALLEYINADNNQ----LTMLPE-------LPTSLEVLSVRNNQLTF----------LPE-L  178 (571)
T ss_dssp             CSSCCSC-----CCC--CCTTCCEEECCSSC----CSCCCC-------CCTTCCEEECCSSCCSC----------CCC-C
T ss_pred             CCCcCCC-----CCC--cCccccEEeCCCCc----cCcCCC-------cCCCcCEEECCCCCCCC----------cch-h
Confidence            3333321     222  45566666665431    111111       35789999998875310          111 2


Q ss_pred             CCCCCCcEEEEeecCCCCCCcccccccCc-------cEEEecCCCCCCCCCC-CCCcccceeecccccCccEeCCcccC
Q 044550          591 QPPLNVEELEIESYRGNIFPKWLTSLTNL-------RELKLSLCVNCEHLPP-LGKLPLEKLQLKNLKSVKRVGNEFLG  661 (662)
Q Consensus       591 ~~~~~L~~L~l~~~~~~~lP~~i~~l~~L-------~~L~L~~~~~~~~lp~-l~~LpL~~l~l~~l~~L~~~~n~~~g  661 (662)
                      .  ++|+.|++++|.+..+|. +..  +|       +.|+|++|... .+|. ++.       +.++..|++.+|.|+|
T Consensus       179 ~--~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-------l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          179 P--ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-------LDPTCTIILEDNPLSS  244 (571)
T ss_dssp             C--TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-------SCTTEEEECCSSSCCH
T ss_pred             h--CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-------CCCCCEEEeeCCcCCC
Confidence            2  899999999999999998 554  67       99999999733 3443 333       4455555566666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.19  E-value=5.3e-11  Score=131.53  Aligned_cols=173  Identities=21%  Similarity=0.180  Sum_probs=124.8

Q ss_pred             hcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550          407 SKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG  486 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~  486 (662)
                      ..++.|.+-++.+..+| .+..|++|++|+|++|.+..+|+ ++++++|+.|+|++|. +..+| .+..+++|++|++++
T Consensus        43 ~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~-~l~~l~~L~~L~Ls~  118 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENK-IKDLS-SLKDLKKLKSLSLEH  118 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSC-CCCCT-TSTTCTTCCEEECTT
T ss_pred             CCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCC-CCCCh-hhccCCCCCEEEecC
Confidence            33333433356777776 58889999999999999998887 9999999999999997 77776 689999999999999


Q ss_pred             CccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550          487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL  566 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  566 (662)
                      |.. ..+ +.++.|++|+.|++.  .+..     ..+..+..|.+|+.|.+++.    .+...   ..  +..+++|+.|
T Consensus       119 N~l-~~l-~~l~~l~~L~~L~Ls--~N~l-----~~l~~l~~l~~L~~L~Ls~N----~l~~~---~~--l~~l~~L~~L  180 (605)
T 1m9s_A          119 NGI-SDI-NGLVHLPQLESLYLG--NNKI-----TDITVLSRLTKLDTLSLEDN----QISDI---VP--LAGLTKLQNL  180 (605)
T ss_dssp             SCC-CCC-GGGGGCTTCSEEECC--SSCC-----CCCGGGGSCTTCSEEECCSS----CCCCC---GG--GTTCTTCCEE
T ss_pred             CCC-CCC-ccccCCCccCEEECC--CCcc-----CCchhhcccCCCCEEECcCC----cCCCc---hh--hccCCCCCEE
Confidence            975 444 458888999998743  3332     12355666677777777654    11221   11  6778899999


Q ss_pred             EEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcc
Q 044550          567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKW  612 (662)
Q Consensus       567 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~  612 (662)
                      +|+.+...           .+..+..+++|+.|+|++|.....|..
T Consensus       181 ~Ls~N~i~-----------~l~~l~~l~~L~~L~L~~N~l~~~p~~  215 (605)
T 1m9s_A          181 YLSKNHIS-----------DLRALAGLKNLDVLELFSQECLNKPIN  215 (605)
T ss_dssp             ECCSSCCC-----------BCGGGTTCTTCSEEECCSEEEECCCCC
T ss_pred             ECcCCCCC-----------CChHHccCCCCCEEEccCCcCcCCccc
Confidence            99877531           023467789999999999987665543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.17  E-value=5.3e-11  Score=112.20  Aligned_cols=101  Identities=13%  Similarity=0.186  Sum_probs=76.5

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|.+-++.+..+| .+..+++|++|++++|.++.+| .++++++|++|++++|......|..+..+++|++|+++
T Consensus        43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            444444444466777777 6888888999999988777664 68888899999998887434467778888899999998


Q ss_pred             CCccccccCCcCCCCCCCCccCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEK  508 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~  508 (662)
                      +|......|..++.+++|++|++
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L  143 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDL  143 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEEC
T ss_pred             CCccCcHhHHHHhhCCCCCEEEc
Confidence            88765556777888888888863

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.13  E-value=8.4e-11  Score=111.89  Aligned_cols=87  Identities=26%  Similarity=0.435  Sum_probs=54.6

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccccC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      +.+..+|..+  ..+|++|++++|.++.+|.. +.++++|++|++++|. +..+|.. +..+++|++|++++|.. ..+|
T Consensus        17 ~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l-~~~~   92 (208)
T 2o6s_A           17 QGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFNKLTSLTYLNLSTNQL-QSLP   92 (208)
T ss_dssp             SCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCCC
T ss_pred             CCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCc-cCccChhhcCCCCCcCEEECCCCcC-CccC
Confidence            3455555544  34677777777777766553 5677777777777766 5555543 46677777777777754 3444


Q ss_pred             C-cCCCCCCCCccC
Q 044550          495 I-GISRLTSLRTLE  507 (662)
Q Consensus       495 ~-~i~~L~~L~~L~  507 (662)
                      . .++.+++|++|+
T Consensus        93 ~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           93 NGVFDKLTQLKELA  106 (208)
T ss_dssp             TTTTTTCTTCCEEE
T ss_pred             HhHhcCccCCCEEE
Confidence            3 356666676665

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.12  E-value=2.5e-12  Score=138.53  Aligned_cols=186  Identities=18%  Similarity=0.091  Sum_probs=96.5

Q ss_pred             ccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCcc-CCcccc-----ccccccEEecCCCcccc----ccCC
Q 044550          431 HLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRG-LPAGIR-----KLMNMRSLLNDGTYLLK----YMPI  495 (662)
Q Consensus       431 ~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~-----~L~~L~~L~l~~~~~~~----~~p~  495 (662)
                      +|++|++++|.++     .+|..+.++++|++|++++|. +.. -+..+.     ..++|++|++++|....    .++.
T Consensus        86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~  164 (461)
T 1z7x_W           86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS  164 (461)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence            5777777777766     456667777777777777766 322 122221     24467777777775432    2344


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCcc-ccc-cCcccCccccccCCCCCCCCC-hhhhhhccccccccCCcEEEEecC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLE-SLK-NLQLLRKCSIEGLKGLSNVSH-VDEVERLQLYNKKNLLRLGLQFGG  572 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~-~L~-~L~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~  572 (662)
                      .+..+++|++|++.  ++.........+. .+. .+.+|+.|.+.+..    +.. ........+..+++|+.|+++.+.
T Consensus       165 ~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~----l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  238 (461)
T 1z7x_W          165 VLRAKPDFKELTVS--NNDINEAGVRVLCQGLKDSPCQLEALKLESCG----VTSDNCRDLCGIVASKASLRELALGSNK  238 (461)
T ss_dssp             HHHHCTTCCEEECC--SSBCHHHHHHHHHHHHHHSCCCCCEEECTTSC----CBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred             HHhhCCCCCEEECc--CCCcchHHHHHHHHHHhcCCCCceEEEccCCC----CcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence            45556677777532  2211000000111 011 13345555555431    111 111122334566778888777654


Q ss_pred             CCCCCCCchhHHHHhhh-CCCCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCC
Q 044550          573 DIEGRRKNEKDKQLLEA-LQPPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       573 ~~~~~~~~~~~~~~l~~-l~~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~  628 (662)
                      .     ........... ..+.++|++|++++|....     +|..+..+++|++|+|++|.
T Consensus       239 l-----~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          239 L-----GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             C-----HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             C-----ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            2     00111111122 2346788888888877654     56666667788888888775

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.12  E-value=3.2e-10  Score=109.61  Aligned_cols=140  Identities=20%  Similarity=0.262  Sum_probs=98.0

Q ss_pred             cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.+..+|..+.  .+|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus        28 ~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l-~~l  103 (229)
T 3e6j_A           28 SKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTNQL-TVL  103 (229)
T ss_dssp             TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred             CCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCCcC-Ccc
Confidence            456777887664  7888999999988877 5678888899999998887 6777654 57888899999888865 444


Q ss_pred             CC-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecC
Q 044550          494 PI-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGG  572 (662)
Q Consensus       494 p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~  572 (662)
                      |. .++.+++|+.|++  ..+..                 .     .+                                
T Consensus       104 ~~~~~~~l~~L~~L~L--s~N~l-----------------~-----~l--------------------------------  127 (229)
T 3e6j_A          104 PSAVFDRLVHLKELFM--CCNKL-----------------T-----EL--------------------------------  127 (229)
T ss_dssp             CTTTTTTCTTCCEEEC--CSSCC-----------------C-----SC--------------------------------
T ss_pred             ChhHhCcchhhCeEec--cCCcc-----------------c-----cc--------------------------------
Confidence            43 3566666666642  11110                 0     00                                


Q ss_pred             CCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCC
Q 044550          573 DIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       573 ~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~  629 (662)
                                    ...+..+++|+.|++++|.+..+|. .+..+++|+.|+|++|..
T Consensus       128 --------------p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A          128 --------------PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             --------------CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             --------------CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence                          0111234677788888888777774 466899999999999973

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.12  E-value=3.9e-10  Score=108.25  Aligned_cols=87  Identities=25%  Similarity=0.397  Sum_probs=59.0

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      +.+..+|..+.  .+|++|++++|.++.+|+ .+.++.+|+.|++++|. +..+ |..+..+++|++|++++|.. ..+|
T Consensus        21 ~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l-~~l~   96 (220)
T 2v9t_B           21 KGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNKI-TELP   96 (220)
T ss_dssp             SCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSSCC-CCCC
T ss_pred             CCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCCcC-CccC
Confidence            45666666554  577777777777777765 57777777777777777 4444 66777777777777777764 4555


Q ss_pred             Cc-CCCCCCCCccC
Q 044550          495 IG-ISRLTSLRTLE  507 (662)
Q Consensus       495 ~~-i~~L~~L~~L~  507 (662)
                      .. ++.+++|+.|+
T Consensus        97 ~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           97 KSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTTTTTCTTCCEEE
T ss_pred             HhHccCCCCCCEEE
Confidence            43 46666666664

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.12  E-value=1.8e-10  Score=119.66  Aligned_cols=89  Identities=20%  Similarity=0.203  Sum_probs=60.4

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchh-hh-cCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LC-ELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKY  492 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~-~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~  492 (662)
                      ++.+..+|..+.  ..+++|+|++|.++.+|.. +. ++.+|++|++++|. +..+| ..+..+++|++|++++|.....
T Consensus        27 ~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~  103 (361)
T 2xot_A           27 KQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTL  103 (361)
T ss_dssp             SSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcC
Confidence            345666776554  3577888888888877664 33 78888888888877 55555 4577788888888888765333


Q ss_pred             cCCcCCCCCCCCccC
Q 044550          493 MPIGISRLTSLRTLE  507 (662)
Q Consensus       493 ~p~~i~~L~~L~~L~  507 (662)
                      .+..+..+++|+.|+
T Consensus       104 ~~~~~~~l~~L~~L~  118 (361)
T 2xot_A          104 DEFLFSDLQALEVLL  118 (361)
T ss_dssp             CTTTTTTCTTCCEEE
T ss_pred             CHHHhCCCcCCCEEE
Confidence            333466777777775

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.09  E-value=7.8e-11  Score=133.52  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=91.0

Q ss_pred             chHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCcccccccc
Q 044550          402 LSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMN  478 (662)
Q Consensus       402 ~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~  478 (662)
                      ++..+..+..|+.|   +|.+..+|..++.+.+|++|+|++|.++.+|..|++|.+|++|+|++|. +..+|..++.|++
T Consensus       216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~  294 (727)
T 4b8c_D          216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQ  294 (727)
T ss_dssp             ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTT
T ss_pred             ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCC
Confidence            35557777888887   5788899999999999999999999999999999999999999999998 7799999999999


Q ss_pred             ccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550          479 MRSLLNDGTYLLKYMPIGISRLTSLRTLEK  508 (662)
Q Consensus       479 L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~  508 (662)
                      |++|++++|.+ ..+|..|+.|++|++|++
T Consensus       295 L~~L~L~~N~l-~~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          295 LKYFYFFDNMV-TTLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             CSEEECCSSCC-CCCCSSTTSCTTCCCEEC
T ss_pred             CCEEECCCCCC-CccChhhhcCCCccEEeC
Confidence            99999999965 789999999999999973

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.09  E-value=7e-12  Score=130.45  Aligned_cols=215  Identities=16%  Similarity=0.075  Sum_probs=130.3

Q ss_pred             hHhhhcCcccccc---cccccccC-----cccCCCC-ccceeeecCCCCccc-chhhhcC-----CCccEEeccCCCCCc
Q 044550          403 SELFSKLVFLRAL---RNWIREIP-----ENVGKLI-HLKYLNLSELRIERI-PETLCEL-----YNLQKLDIRGCQYLR  467 (662)
Q Consensus       403 ~~~~~~l~~Lrvl---~~~~~~lp-----~~i~~l~-~Lr~L~L~~~~i~~l-p~~i~~L-----~~L~~L~l~~~~~l~  467 (662)
                      +.++...+.|+.+   +|.+...+     ..+..++ +|++|+|++|.+... +..++.+     ++|++|++++|. +.
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~   93 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LS   93 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CC
Confidence            3334444445555   56777665     5677788 899999999998865 5566665     999999999998 55


Q ss_pred             cC-Cccc----ccc-ccccEEecCCCccccccCCc----CCCC-CCCCccCceeecCccCCCCccCc-cccccCc-ccCc
Q 044550          468 GL-PAGI----RKL-MNMRSLLNDGTYLLKYMPIG----ISRL-TSLRTLEKFVVGGGVDGGGTCRL-ESLKNLQ-LLRK  534 (662)
Q Consensus       468 ~l-P~~i----~~L-~~L~~L~l~~~~~~~~~p~~----i~~L-~~L~~L~~~~~~~~~~~~~~~~l-~~L~~L~-~L~~  534 (662)
                      .. +..+    ..+ ++|++|++++|......+..    +..+ ++|++|++.  ++.........+ ..+..+. .|+.
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR--GNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECT--TSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEcc--CCcCCHHHHHHHHHHHhcCCccccE
Confidence            44 3433    344 89999999999763322222    3343 588888643  333311111111 1223333 5666


Q ss_pred             cccccCCCCCCCCChhhhhhcccccc-ccCCcEEEEecCCCCCCCCchhHHHHhhhCCC-CCCCcEEEEeecCCCCCCc-
Q 044550          535 CSIEGLKGLSNVSHVDEVERLQLYNK-KNLLRLGLQFGGDIEGRRKNEKDKQLLEALQP-PLNVEELEIESYRGNIFPK-  611 (662)
Q Consensus       535 L~i~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~-~~~L~~L~l~~~~~~~lP~-  611 (662)
                      |.+++..- .  ..........+..+ ++|+.|+++.+..     ...........+.. +++|++|++++|.....+. 
T Consensus       172 L~Ls~n~l-~--~~~~~~l~~~l~~~~~~L~~L~Ls~N~i-----~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~  243 (362)
T 3goz_A          172 LNLRGNNL-A--SKNCAELAKFLASIPASVTSLDLSANLL-----GLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLE  243 (362)
T ss_dssp             EECTTSCG-G--GSCHHHHHHHHHTSCTTCCEEECTTSCG-----GGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHH
T ss_pred             eeecCCCC-c--hhhHHHHHHHHHhCCCCCCEEECCCCCC-----ChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHH
Confidence            66665410 0  01111222234455 5999999987753     11111223333433 4689999999998766443 


Q ss_pred             ----ccccccCccEEEecCCC
Q 044550          612 ----WLTSLTNLRELKLSLCV  628 (662)
Q Consensus       612 ----~i~~l~~L~~L~L~~~~  628 (662)
                          .+..+++|++|+|++|.
T Consensus       244 ~l~~~~~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          244 NLKLLKDSLKHLQTVYLDYDI  264 (362)
T ss_dssp             HHHHTTTTTTTCSEEEEEHHH
T ss_pred             HHHHHHhcCCCccEEEeccCC
Confidence                34578999999999996

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.09  E-value=3.3e-10  Score=108.71  Aligned_cols=97  Identities=23%  Similarity=0.330  Sum_probs=60.9

Q ss_pred             cccccccccccccCc-ccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCC
Q 044550          410 VFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDG  486 (662)
Q Consensus       410 ~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~  486 (662)
                      +.|.+-+|.+..+|. .+..+++|++|+|++|.++.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++
T Consensus        35 ~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~  113 (220)
T 2v9t_B           35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLNA  113 (220)
T ss_dssp             CEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc-CCccCHhHccCCCCCCEEECCC
Confidence            333333556665544 566677777777777776665 5567777777777777766 5566554 45677777777777


Q ss_pred             CccccccCCcCCCCCCCCccC
Q 044550          487 TYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      |......|..++.+++|+.|+
T Consensus       114 N~l~~~~~~~~~~l~~L~~L~  134 (220)
T 2v9t_B          114 NKINCLRVDAFQDLHNLNLLS  134 (220)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEeCHHHcCCCCCCCEEE
Confidence            765444455566666666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.07  E-value=4.4e-10  Score=107.83  Aligned_cols=96  Identities=19%  Similarity=0.189  Sum_probs=55.6

Q ss_pred             ccccccccccccCc--ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCC
Q 044550          411 FLRALRNWIREIPE--NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDG  486 (662)
Q Consensus       411 ~Lrvl~~~~~~lp~--~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~  486 (662)
                      .|.+-+|.+..++.  .+..+++|++|+|++|.++.+|+ .+.++.+|++|++++|. +..+|. .+..+++|++|++++
T Consensus        36 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~  114 (220)
T 2v70_A           36 ELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR-LENVQHKMFKGLESLKTLMLRS  114 (220)
T ss_dssp             EEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCGGGGTTCSSCCEEECTT
T ss_pred             EEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc-cCccCHhHhcCCcCCCEEECCC
Confidence            33333455555522  25566666666666666666554 56666666666666666 444443 356666666666666


Q ss_pred             CccccccCCcCCCCCCCCccC
Q 044550          487 TYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      |......|..++.+++|++|+
T Consensus       115 N~l~~~~~~~~~~l~~L~~L~  135 (220)
T 2v70_A          115 NRITCVGNDSFIGLSSVRLLS  135 (220)
T ss_dssp             SCCCCBCTTSSTTCTTCSEEE
T ss_pred             CcCCeECHhHcCCCccCCEEE
Confidence            655444455566666666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.07  E-value=6.7e-10  Score=101.62  Aligned_cols=122  Identities=25%  Similarity=0.234  Sum_probs=84.3

Q ss_pred             CCceeEEEEecCCCC--CcccccccccccccchHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcc-cc
Q 044550          373 GDNVRHLGLNFQRGA--SFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIER-IP  446 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~--~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp  446 (662)
                      +..++.+.+..+.+.  .+|..             +..++.|+.+   +|.+..+ ..++.+++|++|++++|.+.. +|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~-------------~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~   88 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGL-------------TAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLD   88 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSC-------------CGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCC
T ss_pred             cccCCEEECCCCCCChhhHHHH-------------HHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHH
Confidence            466777777776665  44322             2333444444   5666666 667778888888888888776 66


Q ss_pred             hhhhcCCCccEEeccCCCCCccCC--ccccccccccEEecCCCccccccCC----cCCCCCCCCccCcee
Q 044550          447 ETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTYLLKYMPI----GISRLTSLRTLEKFV  510 (662)
Q Consensus       447 ~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~~~~~~p~----~i~~L~~L~~L~~~~  510 (662)
                      ..+.++++|++|++++|. +..+|  ..+..+++|++|++++|.. ..+|.    .+..+++|+.|++..
T Consensus        89 ~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~l~~L~~L~l~~  156 (168)
T 2ell_A           89 MLAEKLPNLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNCEV-TNLNDYRESVFKLLPQLTYLDGYD  156 (168)
T ss_dssp             HHHHHCTTCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSSGG-GTSTTHHHHHHTTCSSCCEETTEE
T ss_pred             HHHhhCCCCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCCcC-cchHHHHHHHHHhCccCcEecCCC
Confidence            667778888888888886 66665  5777888888888888865 45554    677778888777543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.07  E-value=4.6e-10  Score=116.57  Aligned_cols=99  Identities=19%  Similarity=0.204  Sum_probs=80.7

Q ss_pred             cCcccccccccccccCcc-cC-CCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEe
Q 044550          408 KLVFLRALRNWIREIPEN-VG-KLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLL  483 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~~-i~-~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~  483 (662)
                      .++.|.+-+|.+..++.. +. .+.+|++|+|++|.|+.+|+ .+.++.+|++|+|++|. +..+|. .+..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEE
Confidence            344455446788888665 44 89999999999999998875 69999999999999998 666665 578999999999


Q ss_pred             cCCCccccccCCcCCCCCCCCccC
Q 044550          484 NDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       484 l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      +++|......|..++.+++|+.|+
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~  142 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLY  142 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCCCcccEECHHHhCCcccCCEEE
Confidence            999987555567788888888885

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.01  E-value=1.3e-09  Score=122.26  Aligned_cols=200  Identities=17%  Similarity=0.062  Sum_probs=112.9

Q ss_pred             cCCCCccceeeecCCCCc---ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-CcCCCCC
Q 044550          426 VGKLIHLKYLNLSELRIE---RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP-IGISRLT  501 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~---~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-~~i~~L~  501 (662)
                      ...++.|++|++++|.+.   ..|..+..+.+|++|++..+. ...++..+..+++|+.+++..+......+ ..+..++
T Consensus       367 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~  445 (635)
T 4g8a_A          367 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  445 (635)
T ss_dssp             CCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCT
T ss_pred             cccccccccchhhccccccccccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhcccccccccccccccc
Confidence            345777788888777755   345666777778888777766 55566667777777777777765433333 2355566


Q ss_pred             CCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCch
Q 044550          502 SLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNE  581 (662)
Q Consensus       502 ~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  581 (662)
                      +|+.++..  .+......+..+   ..+..|+.|.+.+..      .........+..+++|+.|+++.+...       
T Consensus       446 ~l~~l~ls--~n~l~~~~~~~~---~~~~~L~~L~Ls~N~------~~~~~~~~~~~~l~~L~~L~Ls~N~L~-------  507 (635)
T 4g8a_A          446 NLIYLDIS--HTHTRVAFNGIF---NGLSSLEVLKMAGNS------FQENFLPDIFTELRNLTFLDLSQCQLE-------  507 (635)
T ss_dssp             TCCEEECT--TSCCEECCTTTT---TTCTTCCEEECTTCE------EGGGEECSCCTTCTTCCEEECTTSCCC-------
T ss_pred             cccccccc--cccccccccccc---ccchhhhhhhhhhcc------cccccCchhhhhccccCEEECCCCccC-------
Confidence            66666422  222111112222   233334344443320      011112234556677888887766420       


Q ss_pred             hHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCCCCCCCCC-CCCCcc--cceeec
Q 044550          582 KDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLCVNCEHLP-PLGKLP--LEKLQL  646 (662)
Q Consensus       582 ~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp--L~~l~l  646 (662)
                        ......+..+++|+.|+|++|.+..+|. .+..+++|++|+|++|+.....| .++.+|  |+.|++
T Consensus       508 --~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L  574 (635)
T 4g8a_A          508 --QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL  574 (635)
T ss_dssp             --EECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEEC
T ss_pred             --CcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEe
Confidence              0012345567788888888888776654 46678888888888887443322 244443  444444

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.00  E-value=1.5e-09  Score=107.27  Aligned_cols=144  Identities=19%  Similarity=0.195  Sum_probs=100.1

Q ss_pred             hhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEE
Q 044550          406 FSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSL  482 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L  482 (662)
                      +..++.|+.+   ++.+..+| .+..+++|++|++++|.++.+|+ ++++++|++|++++|. +..+|....  ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~-l~~l~~~~~--~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNR-LKNLNGIPS--ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CSCCTTCCC--SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCc-cCCcCcccc--CcccEE
Confidence            3444555555   57788887 78889999999999999999988 9999999999999998 778876433  899999


Q ss_pred             ecCCCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccccc
Q 044550          483 LNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKN  562 (662)
Q Consensus       483 ~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~  562 (662)
                      ++++|.. ..+| .++.+++|+.|++  ..+..     ..+..+..+++|+.|.+++.    .+...     ..+..+++
T Consensus       112 ~L~~N~l-~~~~-~l~~l~~L~~L~L--s~N~i-----~~~~~l~~l~~L~~L~L~~N----~i~~~-----~~l~~l~~  173 (263)
T 1xeu_A          112 FLDNNEL-RDTD-SLIHLKNLEILSI--RNNKL-----KSIVMLGFLSKLEVLDLHGN----EITNT-----GGLTRLKK  173 (263)
T ss_dssp             ECCSSCC-SBSG-GGTTCTTCCEEEC--TTSCC-----CBCGGGGGCTTCCEEECTTS----CCCBC-----TTSTTCCC
T ss_pred             EccCCcc-CCCh-hhcCcccccEEEC--CCCcC-----CCChHHccCCCCCEEECCCC----cCcch-----HHhccCCC
Confidence            9999975 5554 5888999999863  23332     12234555555665555542    11111     23455666


Q ss_pred             CCcEEEEecC
Q 044550          563 LLRLGLQFGG  572 (662)
Q Consensus       563 L~~L~l~~~~  572 (662)
                      |+.|+++.+.
T Consensus       174 L~~L~l~~N~  183 (263)
T 1xeu_A          174 VNWIDLTGQK  183 (263)
T ss_dssp             CCEEEEEEEE
T ss_pred             CCEEeCCCCc
Confidence            6666666553

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.00  E-value=1.4e-09  Score=104.23  Aligned_cols=124  Identities=23%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---cccccccCc-ccCCCCccceeeecCCCCcccch-
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-  447 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-  447 (662)
                      ...++.|.+..+.+..++.           +..|..++.|+.+   +|.+..++. .+..+.+|++|+|++|.++.+|+ 
T Consensus        31 ~~~~~~L~L~~N~l~~~~~-----------~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~   99 (220)
T 2v70_A           31 PQYTAELRLNNNEFTVLEA-----------TGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHK   99 (220)
T ss_dssp             CTTCSEEECCSSCCCEECC-----------CCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGG
T ss_pred             CCCCCEEEcCCCcCCccCc-----------hhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHh
Confidence            4455667766666654421           1125566666666   578888765 78999999999999999998876 


Q ss_pred             hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccccCCcCCCCCCCCccCc
Q 044550          448 TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEK  508 (662)
Q Consensus       448 ~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~  508 (662)
                      .+.++++|++|++++|. +..+ |..+..+++|++|++++|......|..++.+++|+.|++
T Consensus       100 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  160 (220)
T 2v70_A          100 MFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL  160 (220)
T ss_dssp             GGTTCSSCCEEECTTSC-CCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             HhcCCcCCCEEECCCCc-CCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEe
Confidence            48999999999999998 5555 778999999999999999875555788999999999863

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.00  E-value=3.4e-10  Score=101.30  Aligned_cols=70  Identities=29%  Similarity=0.324  Sum_probs=32.2

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcc-cchhhhcCCCccEEeccCCCCCccCC--ccccccccccEEecCCCc
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIER-IPETLCELYNLQKLDIRGCQYLRGLP--AGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~-lp~~i~~L~~L~~L~l~~~~~l~~lP--~~i~~L~~L~~L~l~~~~  488 (662)
                      |.+..+ ..++.+++|++|++++|.++. +|..++++++|++|++++|. +..+|  ..++.+++|++|++++|.
T Consensus        52 n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N~  124 (149)
T 2je0_A           52 VGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNCE  124 (149)
T ss_dssp             SCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTCG
T ss_pred             CCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCCc
Confidence            333333 344444455555555554444 44444444555555555444 33332  344444455555554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.99  E-value=1.2e-09  Score=105.41  Aligned_cols=90  Identities=32%  Similarity=0.451  Sum_probs=46.7

Q ss_pred             ccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCccccc
Q 044550          416 RNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKY  492 (662)
Q Consensus       416 ~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~  492 (662)
                      +|.+..+ |..+..+++|++|+|++|.+..+|.. +.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..
T Consensus        49 ~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~Ls~N~l-~~  126 (229)
T 3e6j_A           49 DNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ-LTVLPSAVFDRLVHLKELFMCCNKL-TE  126 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CS
T ss_pred             CCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc-CCccChhHhCcchhhCeEeccCCcc-cc
Confidence            4444444 34455555555555555555555432 3555555555555554 4444432 34555555555555543 35


Q ss_pred             cCCcCCCCCCCCccC
Q 044550          493 MPIGISRLTSLRTLE  507 (662)
Q Consensus       493 ~p~~i~~L~~L~~L~  507 (662)
                      +|..++.+++|++|+
T Consensus       127 lp~~~~~l~~L~~L~  141 (229)
T 3e6j_A          127 LPRGIERLTHLTHLA  141 (229)
T ss_dssp             CCTTGGGCTTCSEEE
T ss_pred             cCcccccCCCCCEEE
Confidence            555555555555554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.99  E-value=2.8e-11  Score=125.90  Aligned_cols=239  Identities=11%  Similarity=0.057  Sum_probs=145.7

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCc-ccccc---ccccccc-CcccCCC-----CccceeeecCCCC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLV-FLRAL---RNWIREI-PENVGKL-----IHLKYLNLSELRI  442 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~-~Lrvl---~~~~~~l-p~~i~~l-----~~Lr~L~L~~~~i  442 (662)
                      ...++.|.+..+.+...+..        .+...+..++ .|+.+   +|.+... +..+..+     ++|++|+|++|.+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~--------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l   92 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTV--------ELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL   92 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHH--------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred             CCCceEEEccCCCCChHHHH--------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC
Confidence            44577887777766543210        0112355455 55555   5666654 4445544     8999999999999


Q ss_pred             cccch-h----hhcC-CCccEEeccCCCCCccCCc-cc----cc-cccccEEecCCCcccc----ccCCcCCCCC-CCCc
Q 044550          443 ERIPE-T----LCEL-YNLQKLDIRGCQYLRGLPA-GI----RK-LMNMRSLLNDGTYLLK----YMPIGISRLT-SLRT  505 (662)
Q Consensus       443 ~~lp~-~----i~~L-~~L~~L~l~~~~~l~~lP~-~i----~~-L~~L~~L~l~~~~~~~----~~p~~i~~L~-~L~~  505 (662)
                      +..+. .    +..+ ++|++|++++|. +...+. .+    .. .++|++|++++|....    .++..+..++ +|++
T Consensus        93 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           93 SYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             ChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            86544 3    5555 899999999998 655543 33    33 2699999999997642    3444455555 8999


Q ss_pred             cCceeecCccCCCCccCcc-ccccC-cccCccccccCCCCCCCCC-hhhhhhccccc-cccCCcEEEEecCCCCCCCCch
Q 044550          506 LEKFVVGGGVDGGGTCRLE-SLKNL-QLLRKCSIEGLKGLSNVSH-VDEVERLQLYN-KKNLLRLGLQFGGDIEGRRKNE  581 (662)
Q Consensus       506 L~~~~~~~~~~~~~~~~l~-~L~~L-~~L~~L~i~~~~~~~~~~~-~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~  581 (662)
                      |++  .++......+..+. .+..+ +.|+.|++++..    +.. ........+.. .++|+.|+++.+...     ..
T Consensus       172 L~L--s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~----i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-----~~  240 (362)
T 3goz_A          172 LNL--RGNNLASKNCAELAKFLASIPASVTSLDLSANL----LGLKSYAELAYIFSSIPNHVVSLNLCLNCLH-----GP  240 (362)
T ss_dssp             EEC--TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC----GGGSCHHHHHHHHHHSCTTCCEEECCSSCCC-----CC
T ss_pred             eee--cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC----CChhHHHHHHHHHhcCCCCceEEECcCCCCC-----cH
Confidence            964  33333222222222 23333 366666666541    111 00112223333 469999999987531     11


Q ss_pred             hHHHHhhhCCCCCCCcEEEEeecCCCCC--------CcccccccCccEEEecCCCCCC
Q 044550          582 KDKQLLEALQPPLNVEELEIESYRGNIF--------PKWLTSLTNLRELKLSLCVNCE  631 (662)
Q Consensus       582 ~~~~~l~~l~~~~~L~~L~l~~~~~~~l--------P~~i~~l~~L~~L~L~~~~~~~  631 (662)
                      ........+...++|+.|++++|....+        +..+..+++|+.|+|++|....
T Consensus       241 ~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~  298 (362)
T 3goz_A          241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP  298 (362)
T ss_dssp             CHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred             HHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence            2233345567789999999999974333        3345578899999999998543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.99  E-value=1.9e-11  Score=131.74  Aligned_cols=233  Identities=17%  Similarity=0.171  Sum_probs=138.8

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccc-----ccCcccCCCCccceeeecCCCCcc
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIR-----EIPENVGKLIHLKYLNLSELRIER  444 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~  444 (662)
                      +..++.+.+..+.+...+           +...+..++.|+.+   +|.+.     .++..+..+++|++|++++|.+..
T Consensus         2 ~~~l~~L~Ls~~~l~~~~-----------~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~   70 (461)
T 1z7x_W            2 SLDIQSLDIQCEELSDAR-----------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD   70 (461)
T ss_dssp             CEEEEEEEEESCCCCHHH-----------HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH
T ss_pred             CccceehhhhhcccCchh-----------HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh
Confidence            456777888776665321           11224444555555   45555     457778888999999999999874


Q ss_pred             c-chhhh-cCC----CccEEeccCCCCCc-----cCCccccccccccEEecCCCccccccCC----c-CCCCCCCCccCc
Q 044550          445 I-PETLC-ELY----NLQKLDIRGCQYLR-----GLPAGIRKLMNMRSLLNDGTYLLKYMPI----G-ISRLTSLRTLEK  508 (662)
Q Consensus       445 l-p~~i~-~L~----~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~~~~p~----~-i~~L~~L~~L~~  508 (662)
                      . +..+. .+.    +|++|++++|. +.     .+|..+..+++|++|++++|......+.    . ...+++|++|++
T Consensus        71 ~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L  149 (461)
T 1z7x_W           71 VGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQL  149 (461)
T ss_dssp             HHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             HHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEEC
Confidence            2 33333 455    69999999998 54     5688889999999999999975322222    1 223567888864


Q ss_pred             eeecCccCCCCccC-ccccccCcccCccccccCCCCCCCCCh-hhhhhcccc-ccccCCcEEEEecCCCCCCCCchhHHH
Q 044550          509 FVVGGGVDGGGTCR-LESLKNLQLLRKCSIEGLKGLSNVSHV-DEVERLQLY-NKKNLLRLGLQFGGDIEGRRKNEKDKQ  585 (662)
Q Consensus       509 ~~~~~~~~~~~~~~-l~~L~~L~~L~~L~i~~~~~~~~~~~~-~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~  585 (662)
                      .  .+......... ...+..+++|+.|.+++..    +... .......+. ..++|+.|+++.+..     .......
T Consensus       150 ~--~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~----i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l-----~~~~~~~  218 (461)
T 1z7x_W          150 E--YCSLSAASCEPLASVLRAKPDFKELTVSNND----INEAGVRVLCQGLKDSPCQLEALKLESCGV-----TSDNCRD  218 (461)
T ss_dssp             T--TSCCBGGGHHHHHHHHHHCTTCCEEECCSSB----CHHHHHHHHHHHHHHSCCCCCEEECTTSCC-----BTTHHHH
T ss_pred             C--CCCCCHHHHHHHHHHHhhCCCCCEEECcCCC----cchHHHHHHHHHHhcCCCCceEEEccCCCC-----cHHHHHH
Confidence            3  22221111011 1233445666666666531    1110 001111111 345899999887753     1112223


Q ss_pred             HhhhCCCCCCCcEEEEeecCCCCC------CcccccccCccEEEecCCC
Q 044550          586 LLEALQPPLNVEELEIESYRGNIF------PKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       586 ~l~~l~~~~~L~~L~l~~~~~~~l------P~~i~~l~~L~~L~L~~~~  628 (662)
                      +...+..+++|++|++++|.....      +.+...+++|++|+|++|.
T Consensus       219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~  267 (461)
T 1z7x_W          219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG  267 (461)
T ss_dssp             HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence            444556678999999998864331      2223357899999999996

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.98  E-value=2.2e-11  Score=135.60  Aligned_cols=66  Identities=20%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             cccCcccCCCCccceeeecCCCCc--ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          420 REIPENVGKLIHLKYLNLSELRIE--RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       420 ~~lp~~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      ..+|..+..+++|++|++++|.++  .++..+.++++|++|+++++..-..++.....+++|++|+++
T Consensus       283 ~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~  350 (592)
T 3ogk_B          283 NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIE  350 (592)
T ss_dssp             TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEE
T ss_pred             hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEee
Confidence            334555555666666666666644  222335566666666666332112233333456666777666

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.98  E-value=2.6e-10  Score=102.08  Aligned_cols=99  Identities=20%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             hcCccccccccccc--ccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEe
Q 044550          407 SKLVFLRALRNWIR--EIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~  483 (662)
                      .+++.|.+-+|.+.  .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|. +.. +|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNR-VSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSC-CCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCc-ccchHHHHhhhCCCCCEEE
Confidence            33444444456676  7888888999999999999999888 778999999999999998 555 787777899999999


Q ss_pred             cCCCccccccC--CcCCCCCCCCccCc
Q 044550          484 NDGTYLLKYMP--IGISRLTSLRTLEK  508 (662)
Q Consensus       484 l~~~~~~~~~p--~~i~~L~~L~~L~~  508 (662)
                      +++|.. ..+|  ..++.+++|++|++
T Consensus        95 ls~N~i-~~~~~~~~~~~l~~L~~L~l  120 (149)
T 2je0_A           95 LSGNKI-KDLSTIEPLKKLENLKSLDL  120 (149)
T ss_dssp             CTTSCC-CSHHHHGGGGGCTTCCEEEC
T ss_pred             CCCCcC-CChHHHHHHhhCCCCCEEeC
Confidence            999975 4443  67888888888863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.96  E-value=1.3e-09  Score=102.13  Aligned_cols=98  Identities=21%  Similarity=0.269  Sum_probs=63.5

Q ss_pred             CcccccccccccccCcc--cCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCc-cccccccccEEec
Q 044550          409 LVFLRALRNWIREIPEN--VGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLN  484 (662)
Q Consensus       409 l~~Lrvl~~~~~~lp~~--i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l  484 (662)
                      ++.|.+-+|.+..++..  ++.+++|++|+|++|.++.+ |..++++.+|++|++++|. +..+|. .+..+++|++|++
T Consensus        31 l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           31 TTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             CSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEEEC
T ss_pred             CCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCc-CCccCHHHhcCCCCCCEEEC
Confidence            33444335666666543  66677777777777777766 5567777777777777776 444433 4667777777777


Q ss_pred             CCCccccccCCcCCCCCCCCccC
Q 044550          485 DGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       485 ~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      ++|......|..++.+++|+.|+
T Consensus       110 ~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A          110 YDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCcCCeeCHHHhhcCCCCCEEE
Confidence            77766555566677777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.95  E-value=3.6e-09  Score=100.49  Aligned_cols=99  Identities=25%  Similarity=0.446  Sum_probs=72.5

Q ss_pred             hcCcccccccccccccCcc-cCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEe
Q 044550          407 SKLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLL  483 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~  483 (662)
                      .+++.|.+-++.+..+|.. +..+++|++|++++|.++.+|.. +.++.+|++|++++|. +..+|.. +..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQSLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc-CCccCHhHhcCccCCCEEE
Confidence            3444454446677776654 57788899999998888888764 5788889999998887 6666654 57888899999


Q ss_pred             cCCCccccccCC-cCCCCCCCCccC
Q 044550          484 NDGTYLLKYMPI-GISRLTSLRTLE  507 (662)
Q Consensus       484 l~~~~~~~~~p~-~i~~L~~L~~L~  507 (662)
                      +++|.. ..+|. .++.+++|++|+
T Consensus       107 L~~N~l-~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A          107 LNTNQL-QSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             CCSSCC-CCCCTTTTTTCTTCCEEE
T ss_pred             cCCCcC-cccCHhHhccCCcCCEEE
Confidence            988865 44444 467778888775

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.94  E-value=1.7e-09  Score=99.72  Aligned_cols=124  Identities=21%  Similarity=0.138  Sum_probs=85.2

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhh-hc
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETL-CE  451 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~  451 (662)
                      ...++.+.+..+.+..+|. +.         ....+++.|.+-+|.+..+ +.++.+++|++|++++|.++.+|+.+ ++
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~---------~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~   86 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LG---------ATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA   86 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GG---------GGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH
T ss_pred             cCCceEEEeeCCCCchhHH-hh---------hcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc
Confidence            5567777777776654421 11         1012344444445677766 56778888888888888888887655 78


Q ss_pred             CCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccccCCc----CCCCCCCCccCce
Q 044550          452 LYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKYMPIG----ISRLTSLRTLEKF  509 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~~p~~----i~~L~~L~~L~~~  509 (662)
                      +++|++|++++|. +..+|.  .+..+++|++|++++|.. ..+|..    ++.+++|+.|++.
T Consensus        87 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           87 LPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TNKKHYRLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             CTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GGSTTHHHHHHHHCTTCSEETTE
T ss_pred             CCCCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCCC-CCcHhHHHHHHHHCCccceeCCC
Confidence            8888888888887 677776  677888888888888865 456654    6677777777643

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.94  E-value=6.4e-10  Score=101.76  Aligned_cols=97  Identities=23%  Similarity=0.291  Sum_probs=72.4

Q ss_pred             cCccccccccccc--ccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCcc-CCccccccccccEEec
Q 044550          408 KLVFLRALRNWIR--EIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG-LPAGIRKLMNMRSLLN  484 (662)
Q Consensus       408 ~l~~Lrvl~~~~~--~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~-lP~~i~~L~~L~~L~l  484 (662)
                      +++.|.+-+|.+.  .+|..+..+++|++|++++|.++.+ ..++++++|++|++++|. +.. +|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENR-IFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCC-CCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCc-CchHHHHHHhhCCCCCEEec
Confidence            3344444456676  7787778888888888888888877 778888888888888887 444 7776777888888888


Q ss_pred             CCCccccccC--CcCCCCCCCCccC
Q 044550          485 DGTYLLKYMP--IGISRLTSLRTLE  507 (662)
Q Consensus       485 ~~~~~~~~~p--~~i~~L~~L~~L~  507 (662)
                      ++|.. ..+|  ..++.+++|+.|+
T Consensus       103 s~N~l-~~~~~~~~l~~l~~L~~L~  126 (168)
T 2ell_A          103 SGNKL-KDISTLEPLKKLECLKSLD  126 (168)
T ss_dssp             BSSSC-CSSGGGGGGSSCSCCCEEE
T ss_pred             cCCcc-CcchhHHHHhcCCCCCEEE
Confidence            88864 5544  5677777777775

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.94  E-value=7.4e-10  Score=121.61  Aligned_cols=100  Identities=20%  Similarity=0.295  Sum_probs=71.7

Q ss_pred             ccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCcee
Q 044550          431 HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFV  510 (662)
Q Consensus       431 ~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~  510 (662)
                      .|++|+|++|.++.+|. ++++++|++|++++|. +..+|..++.+++|++|++++|.. ..+| .++.|++|++|++  
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp-~l~~l~~L~~L~L--  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELLL--  515 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEEC--
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCccc-ccccchhhhcCCCCCEEECCCCCC-CCCc-ccCCCCCCcEEEC--
Confidence            48888888888888886 8888888888888887 678888888888888888888865 5577 7888888888863  


Q ss_pred             ecCccCCCC-ccCccccccCcccCcccccc
Q 044550          511 VGGGVDGGG-TCRLESLKNLQLLRKCSIEG  539 (662)
Q Consensus       511 ~~~~~~~~~-~~~l~~L~~L~~L~~L~i~~  539 (662)
                      .++...... +..   +..|++|+.|.+++
T Consensus       516 s~N~l~~~~~p~~---l~~l~~L~~L~L~~  542 (567)
T 1dce_A          516 CNNRLQQSAAIQP---LVSCPRLVLLNLQG  542 (567)
T ss_dssp             CSSCCCSSSTTGG---GGGCTTCCEEECTT
T ss_pred             CCCCCCCCCCcHH---HhcCCCCCEEEecC
Confidence            334332221 333   44444555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.92  E-value=2.6e-09  Score=100.09  Aligned_cols=96  Identities=23%  Similarity=0.335  Sum_probs=54.9

Q ss_pred             cccccccccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCC
Q 044550          410 VFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGT  487 (662)
Q Consensus       410 ~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~  487 (662)
                      +.|.+-+|.+..+|..+..+.+|++|+|++|.++.+|+ .+.++.+|++|++++|. +..+| ..+..+++|++|++++|
T Consensus        34 ~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~L~~N  112 (193)
T 2wfh_A           34 TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LRCIPPRTFDGLKSLRLLSLHGN  112 (193)
T ss_dssp             CEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCBCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc-cCEeCHHHhCCCCCCCEEECCCC
Confidence            33333345555666666666666666666666665543 46666666666666665 44443 34566666666666666


Q ss_pred             ccccccCC-cCCCCCCCCccC
Q 044550          488 YLLKYMPI-GISRLTSLRTLE  507 (662)
Q Consensus       488 ~~~~~~p~-~i~~L~~L~~L~  507 (662)
                      .. ..+|. .+..+++|+.|+
T Consensus       113 ~l-~~~~~~~~~~l~~L~~L~  132 (193)
T 2wfh_A          113 DI-SVVPEGAFNDLSALSHLA  132 (193)
T ss_dssp             CC-CBCCTTTTTTCTTCCEEE
T ss_pred             CC-CeeChhhhhcCccccEEE
Confidence            54 34443 355566666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.89  E-value=2.9e-09  Score=116.91  Aligned_cols=70  Identities=21%  Similarity=0.237  Sum_probs=34.6

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccC--CccccccccccEEecCCCc
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGL--PAGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~l--P~~i~~L~~L~~L~l~~~~  488 (662)
                      |.+..+|..++.|++|++|+|++|.++.+| .++++++|++|++++|. +..+  |..++.+++|+.|++++|.
T Consensus       473 N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          473 NRLRALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             SCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccccccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence            444444555555555555555555555444 45555555555555544 3333  4445555555555555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.89  E-value=5.7e-09  Score=97.71  Aligned_cols=90  Identities=18%  Similarity=0.264  Sum_probs=76.5

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      ++.+..+|..+.  .+|++|++++|.++.+|..+.++.+|++|++++|. +..+| ..+..+++|++|++++|......|
T Consensus        19 ~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           19 NKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNR-ISTLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             TSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             CCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCc-CCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            457788887764  68999999999999999999999999999999998 66665 568999999999999998744445


Q ss_pred             CcCCCCCCCCccCc
Q 044550          495 IGISRLTSLRTLEK  508 (662)
Q Consensus       495 ~~i~~L~~L~~L~~  508 (662)
                      ..++.+++|+.|++
T Consensus        96 ~~f~~l~~L~~L~L  109 (193)
T 2wfh_A           96 RTFDGLKSLRLLSL  109 (193)
T ss_dssp             TTTTTCTTCCEEEC
T ss_pred             HHhCCCCCCCEEEC
Confidence            57899999999863

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.88  E-value=4.5e-09  Score=98.41  Aligned_cols=91  Identities=23%  Similarity=0.312  Sum_probs=76.4

Q ss_pred             ccccccccCcccCCCCccceeeecCCCCcccchh--hhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCcccc
Q 044550          415 LRNWIREIPENVGKLIHLKYLNLSELRIERIPET--LCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLK  491 (662)
Q Consensus       415 l~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~--i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~  491 (662)
                      .++.++.+|..+..  +|++|++++|.++.+|+.  ++++++|++|++++|. +..+ |..+..+++|++|++++|....
T Consensus        16 s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~   92 (192)
T 1w8a_A           16 TGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGENKIKE   92 (192)
T ss_dssp             TTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSCCCCE
T ss_pred             CCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCCcCCc
Confidence            35677888887754  899999999999998874  8999999999999998 5555 7789999999999999998755


Q ss_pred             ccCCcCCCCCCCCccCc
Q 044550          492 YMPIGISRLTSLRTLEK  508 (662)
Q Consensus       492 ~~p~~i~~L~~L~~L~~  508 (662)
                      ..|..++.+++|++|++
T Consensus        93 ~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           93 ISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             ECSSSSTTCTTCCEEEC
T ss_pred             cCHHHhcCCCCCCEEEC
Confidence            55566889999999963

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.87  E-value=7.5e-10  Score=123.17  Aligned_cols=80  Identities=10%  Similarity=0.020  Sum_probs=52.3

Q ss_pred             CCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccc---cccCCcCC
Q 044550          427 GKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLL---KYMPIGIS  498 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~---~~~p~~i~  498 (662)
                      ..+++|++|++++|.++     .++..+.++++|++|++++|. +..+|..+..+++|++|+++.+...   ...+..++
T Consensus       189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~  267 (592)
T 3ogk_B          189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV  267 (592)
T ss_dssp             HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred             hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHHHHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence            45677778888777764     445556677888888888776 6667777777778888877653221   12234455


Q ss_pred             CCCCCCccC
Q 044550          499 RLTSLRTLE  507 (662)
Q Consensus       499 ~L~~L~~L~  507 (662)
                      .+++|+.|+
T Consensus       268 ~~~~L~~L~  276 (592)
T 3ogk_B          268 FPRKLCRLG  276 (592)
T ss_dssp             CCTTCCEEE
T ss_pred             ccccccccC
Confidence            666666664

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.87  E-value=1.6e-09  Score=99.87  Aligned_cols=78  Identities=21%  Similarity=0.316  Sum_probs=57.1

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCC-CccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC-CCCCCC
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELY-NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI-SRLTSL  503 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~-~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i-~~L~~L  503 (662)
                      +.++.+|++|++++|.++.+|. +..+. +|++|++++|. +..+ ..+..+++|++|++++|.. ..+|+.+ +.+++|
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~-l~~~-~~l~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNE-IRKL-DGFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDL   90 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSC-CCEE-CCCCCCSSCCEEECCSSCC-CEECSCHHHHCTTC
T ss_pred             cCCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCC-CCcc-cccccCCCCCEEECCCCcc-cccCcchhhcCCCC
Confidence            4567888888888888888865 55555 88888888887 6666 5688888888888888865 4555443 566666


Q ss_pred             CccC
Q 044550          504 RTLE  507 (662)
Q Consensus       504 ~~L~  507 (662)
                      +.|+
T Consensus        91 ~~L~   94 (176)
T 1a9n_A           91 TELI   94 (176)
T ss_dssp             CEEE
T ss_pred             CEEE
Confidence            6664

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.79  E-value=5.9e-09  Score=118.07  Aligned_cols=116  Identities=25%  Similarity=0.244  Sum_probs=86.0

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      ++.+...|..+..+.+|++|+|++|.+..+|..+.++.+|++|+|++|. +..+|..++.|++|++|++++|.+ ..+|.
T Consensus       210 ~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l-~~lp~  287 (727)
T 4b8c_D          210 ENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNS-LTELPAEIKNLSNLRVLDLSHNRL-TSLPA  287 (727)
T ss_dssp             ------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSC-CSCCCGGGGGGTTCCEEECTTSCC-SSCCS
T ss_pred             ccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCc-CcccChhhhCCCCCCEEeCcCCcC-CccCh
Confidence            3455556788899999999999999999999999999999999999998 779999999999999999999986 58999


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCcccccc
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEG  539 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~  539 (662)
                      .++.|++|+.|++.  .+.. ...+..   +..|.+|+.|.+++
T Consensus       288 ~~~~l~~L~~L~L~--~N~l-~~lp~~---~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          288 ELGSCFQLKYFYFF--DNMV-TTLPWE---FGNLCNLQFLGVEG  325 (727)
T ss_dssp             SGGGGTTCSEEECC--SSCC-CCCCSS---TTSCTTCCCEECTT
T ss_pred             hhcCCCCCCEEECC--CCCC-CccChh---hhcCCCccEEeCCC
Confidence            99999999999743  3333 233333   44455555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.78  E-value=1.5e-09  Score=120.70  Aligned_cols=84  Identities=17%  Similarity=0.194  Sum_probs=49.1

Q ss_pred             HhhhcCcccccc---cccccc-----cCcccCCCCccceeeecCCC--Cc--ccchhhhcCCCccEEeccCCCCCccCCc
Q 044550          404 ELFSKLVFLRAL---RNWIRE-----IPENVGKLIHLKYLNLSELR--IE--RIPETLCELYNLQKLDIRGCQYLRGLPA  471 (662)
Q Consensus       404 ~~~~~l~~Lrvl---~~~~~~-----lp~~i~~l~~Lr~L~L~~~~--i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~  471 (662)
                      ..+.+++.|+.|   +|.+..     ++.....+++|++|++++|.  +.  .++.-+.++++|++|++++|..+..+|.
T Consensus       150 ~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~  229 (594)
T 2p1m_B          150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT  229 (594)
T ss_dssp             HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred             HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence            334456666665   333322     33333456778888888775  22  2333345567888888887754555666


Q ss_pred             cccccccccEEecCCC
Q 044550          472 GIRKLMNMRSLLNDGT  487 (662)
Q Consensus       472 ~i~~L~~L~~L~l~~~  487 (662)
                      .+..+++|++|+++.+
T Consensus       230 ~~~~~~~L~~L~l~~~  245 (594)
T 2p1m_B          230 LLQRAPQLEELGTGGY  245 (594)
T ss_dssp             HHHHCTTCSEEECSBC
T ss_pred             HHhcCCcceEcccccc
Confidence            6666677777765544

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.74  E-value=1.8e-08  Score=92.60  Aligned_cols=88  Identities=26%  Similarity=0.408  Sum_probs=69.1

Q ss_pred             cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.+..+|..+.  .+|++|+|++|.++.+ |..++++++|++|+|++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus        21 ~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~l-~~l   96 (174)
T 2r9u_A           21 NIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLNDNHL-KSI   96 (174)
T ss_dssp             SSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred             CCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECCCCcc-cee
Confidence            456777787764  7888888888888877 4578888888888888887 7777765 47888888888888865 566


Q ss_pred             CCc-CCCCCCCCccC
Q 044550          494 PIG-ISRLTSLRTLE  507 (662)
Q Consensus       494 p~~-i~~L~~L~~L~  507 (662)
                      |.. ++.+++|+.|+
T Consensus        97 ~~~~~~~l~~L~~L~  111 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIY  111 (174)
T ss_dssp             CTTTTTTCTTCSEEE
T ss_pred             CHHHhccccCCCEEE
Confidence            654 78888888886

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.72  E-value=4.1e-08  Score=90.45  Aligned_cols=98  Identities=32%  Similarity=0.460  Sum_probs=65.5

Q ss_pred             cCcccccccccccccCcc-cCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEec
Q 044550          408 KLVFLRALRNWIREIPEN-VGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLN  484 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l  484 (662)
                      +++.|.+-++.+..+|.. +..+++|++|++++|.++.+|+. ++++.+|++|++++|. +..+|.. +..+++|++|++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELAL  107 (177)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC-ccccCHHHhhCCcccCEEEC
Confidence            334444445666666543 46777888888888877777654 5777888888888776 5566553 567778888888


Q ss_pred             CCCccccccCCc-CCCCCCCCccC
Q 044550          485 DGTYLLKYMPIG-ISRLTSLRTLE  507 (662)
Q Consensus       485 ~~~~~~~~~p~~-i~~L~~L~~L~  507 (662)
                      ++|.. ..+|.. +..+++|+.|+
T Consensus       108 ~~N~l-~~~~~~~~~~l~~L~~L~  130 (177)
T 2o6r_A          108 DTNQL-KSVPDGIFDRLTSLQKIW  130 (177)
T ss_dssp             CSSCC-SCCCTTTTTTCTTCCEEE
T ss_pred             cCCcc-eEeCHHHhcCCcccCEEE
Confidence            77755 455544 46677777775

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.71  E-value=3.2e-08  Score=90.49  Aligned_cols=89  Identities=27%  Similarity=0.399  Sum_probs=71.8

Q ss_pred             cccccccCcccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.+..+|..+.  .+|++|+|++|.|+.+ |..+.++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus        18 ~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~N~l-~~~   93 (170)
T 3g39_A           18 GKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQ-LTVLPAGVFDKLTQLTQLSLNDNQL-KSI   93 (170)
T ss_dssp             TSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred             CCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCC-cCccChhhccCCCCCCEEECCCCcc-CEe
Confidence            467778887764  7899999999999888 5568899999999999988 7777765 57899999999999875 556


Q ss_pred             CC-cCCCCCCCCccCc
Q 044550          494 PI-GISRLTSLRTLEK  508 (662)
Q Consensus       494 p~-~i~~L~~L~~L~~  508 (662)
                      |. .++.+++|+.|++
T Consensus        94 ~~~~~~~l~~L~~L~L  109 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWL  109 (170)
T ss_dssp             CTTTTTTCTTCCEEEC
T ss_pred             CHHHhcCCCCCCEEEe
Confidence            55 4888888988863

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.67  E-value=5e-08  Score=89.54  Aligned_cols=104  Identities=21%  Similarity=0.265  Sum_probs=80.0

Q ss_pred             EEEEecCCCCCcccccccccccccchHhhhcCccccccccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCc
Q 044550          378 HLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNL  455 (662)
Q Consensus       378 ~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L  455 (662)
                      .+.+..+.+..+|..+            ..+++.|.+-+|.+..+ |..+.++++|++|+|++|.++.+|.. +.++.+|
T Consensus        16 ~l~~~~n~l~~iP~~~------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L   83 (174)
T 2r9u_A           16 LVNCQNIRLASVPAGI------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL   83 (174)
T ss_dssp             EEECCSSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEeCCCCCCccCCCc------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchh
Confidence            4455555555555432            23444455446888887 56788999999999999999999886 5899999


Q ss_pred             cEEeccCCCCCccCCcc-ccccccccEEecCCCccccccCC
Q 044550          456 QKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       456 ~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      ++|++++|. +..+|.. +..+++|++|++++|.. ...|.
T Consensus        84 ~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N~~-~c~~~  122 (174)
T 2r9u_A           84 TQLDLNDNH-LKSIPRGAFDNLKSLTHIYLYNNPW-DCECR  122 (174)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCB-CTTBG
T ss_pred             hEEECCCCc-cceeCHHHhccccCCCEEEeCCCCc-ccccc
Confidence            999999998 7888875 88999999999999964 44443

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.65  E-value=1.3e-10  Score=109.61  Aligned_cols=61  Identities=21%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             ccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCC
Q 044550          425 NVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT  487 (662)
Q Consensus       425 ~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~  487 (662)
                      .++.+++|++|++++|.++.+| .++++++|++|++++|. +..+|..+..+++|++|++++|
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N  103 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE
T ss_pred             HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC
Confidence            4444445555555555444444 44445555555555444 4444444444445555555444

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.65  E-value=9.6e-08  Score=87.92  Aligned_cols=89  Identities=24%  Similarity=0.394  Sum_probs=71.9

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchh-hhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYLLKYM  493 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~~~~~  493 (662)
                      ++.+..+|..+.  .+|++|++++|.++.+|.. ++++.+|++|++++|. +..+|.. +..+++|++|++++|.. ..+
T Consensus        16 ~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~   91 (177)
T 2o6r_A           16 SKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQ-IQSLPDGVFDKLTKLTILYLHENKL-QSL   91 (177)
T ss_dssp             SSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCC-CCC
T ss_pred             CCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCc-ceEeChhHccCCCccCEEECCCCCc-ccc
Confidence            456777776554  7899999999999988764 6899999999999998 7777764 68999999999999976 455


Q ss_pred             CC-cCCCCCCCCccCc
Q 044550          494 PI-GISRLTSLRTLEK  508 (662)
Q Consensus       494 p~-~i~~L~~L~~L~~  508 (662)
                      |. .++.+++|++|++
T Consensus        92 ~~~~~~~l~~L~~L~l  107 (177)
T 2o6r_A           92 PNGVFDKLTQLKELAL  107 (177)
T ss_dssp             CTTTTTTCTTCCEEEC
T ss_pred             CHHHhhCCcccCEEEC
Confidence            54 4688889988863

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.64  E-value=5.4e-10  Score=105.32  Aligned_cols=101  Identities=26%  Similarity=0.287  Sum_probs=84.6

Q ss_pred             hHhhhcCcccccc---cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550          403 SELFSKLVFLRAL---RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM  479 (662)
Q Consensus       403 ~~~~~~l~~Lrvl---~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L  479 (662)
                      +..+..++.|+.+   +|.+..+| .+..+++|++|++++|.++.+|..+..+++|++|++++|. +..+| .+..+++|
T Consensus        41 ~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~-l~~l~-~~~~l~~L  117 (198)
T 1ds9_A           41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQ-IASLS-GIEKLVNL  117 (198)
T ss_dssp             HHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEE-CCCHH-HHHHHHHS
T ss_pred             hHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCc-CCcCC-ccccCCCC
Confidence            3346677777776   57888888 8889999999999999999999999999999999999997 77787 68999999


Q ss_pred             cEEecCCCccccccCC--cCCCCCCCCccC
Q 044550          480 RSLLNDGTYLLKYMPI--GISRLTSLRTLE  507 (662)
Q Consensus       480 ~~L~l~~~~~~~~~p~--~i~~L~~L~~L~  507 (662)
                      ++|++++|.. ..+|.  .++.+++|+.|+
T Consensus       118 ~~L~l~~N~i-~~~~~~~~l~~l~~L~~L~  146 (198)
T 1ds9_A          118 RVLYMSNNKI-TNWGEIDKLAALDKLEDLL  146 (198)
T ss_dssp             SEEEESEEEC-CCHHHHHHHTTTTTCSEEE
T ss_pred             CEEECCCCcC-CchhHHHHHhcCCCCCEEE
Confidence            9999999865 44443  678888888886

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.63  E-value=6.7e-08  Score=88.33  Aligned_cols=99  Identities=20%  Similarity=0.277  Sum_probs=78.0

Q ss_pred             EEEEecCCCCCcccccccccccccchHhhhcCccccccccccccc-CcccCCCCccceeeecCCCCcccchh-hhcCCCc
Q 044550          378 HLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREI-PENVGKLIHLKYLNLSELRIERIPET-LCELYNL  455 (662)
Q Consensus       378 ~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~l-p~~i~~l~~Lr~L~L~~~~i~~lp~~-i~~L~~L  455 (662)
                      .+.+..+.+..+|..+            ..+++.|.+-+|.+..+ |..+..+.+|++|+|++|.++.+|+. +.++.+|
T Consensus        13 ~l~~s~n~l~~ip~~~------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L   80 (170)
T 3g39_A           13 TVDCSGKSLASVPTGI------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL   80 (170)
T ss_dssp             EEECTTSCCSSCCSCC------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEEeCCCCcCccCccC------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCC
Confidence            4555555555555332            34445555557888888 66789999999999999999999876 5899999


Q ss_pred             cEEeccCCCCCccCCc-cccccccccEEecCCCcc
Q 044550          456 QKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       456 ~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~  489 (662)
                      ++|++++|. +..+|. .+..+++|++|++++|..
T Consensus        81 ~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~~  114 (170)
T 3g39_A           81 TQLSLNDNQ-LKSIPRGAFDNLKSLTHIWLLNNPW  114 (170)
T ss_dssp             CEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CEEECCCCc-cCEeCHHHhcCCCCCCEEEeCCCCC
Confidence            999999998 777876 488999999999999964

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.63  E-value=5.2e-09  Score=116.38  Aligned_cols=205  Identities=16%  Similarity=0.085  Sum_probs=94.3

Q ss_pred             CCCccceeeecCC-CCcc--cchhhhcCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc-c--cccCCc
Q 044550          428 KLIHLKYLNLSEL-RIER--IPETLCELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL-L--KYMPIG  496 (662)
Q Consensus       428 ~l~~Lr~L~L~~~-~i~~--lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~-~--~~~p~~  496 (662)
                      .+++|++|+|++| .++.  ++..+.++++|++|++++|. +..     ++.....+++|++|++++|.. .  ..++.-
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l  206 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERL  206 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHH
Confidence            3667777777776 3443  44545567777777777766 322     222223556777777776640 0  011111


Q ss_pred             CCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCC
Q 044550          497 ISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG  576 (662)
Q Consensus       497 i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~  576 (662)
                      +..+++|+.|++..+. ..    ......+..+++|+.|.+..+...........+ ...+.++++|+.|.-.+...   
T Consensus       207 ~~~~~~L~~L~L~~~~-~~----~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l-~~~l~~~~~L~~Ls~~~~~~---  277 (594)
T 2p1m_B          207 VTRCPNLKSLKLNRAV-PL----EKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL-SVALSGCKELRCLSGFWDAV---  277 (594)
T ss_dssp             HHHCTTCCEEECCTTS-CH----HHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH-HHHHHTCTTCCEEECCBTCC---
T ss_pred             HHhCCCCcEEecCCCC-cH----HHHHHHHhcCCcceEcccccccCccchhhHHHH-HHHHhcCCCcccccCCcccc---
Confidence            2334666666532110 00    001111223334444444333110000011111 12455666777663111100   


Q ss_pred             CCCchhHHHHhhhCCCCCCCcEEEEeecCCCC--CCcccccccCccEEEecCCCCCCCCCCCC-Ccc-cceeeccc
Q 044550          577 RRKNEKDKQLLEALQPPLNVEELEIESYRGNI--FPKWLTSLTNLRELKLSLCVNCEHLPPLG-KLP-LEKLQLKN  648 (662)
Q Consensus       577 ~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--lP~~i~~l~~L~~L~L~~~~~~~~lp~l~-~Lp-L~~l~l~~  648 (662)
                            ...+...+..+++|++|++++|....  ++..+..+++|++|++++|.....++.+. .+| |+.|++.+
T Consensus       278 ------~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~  347 (594)
T 2p1m_B          278 ------PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFP  347 (594)
T ss_dssp             ------GGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             ------hhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEec
Confidence                  01111112235778888888776321  12234467888888888772111222222 356 77776643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.39  E-value=4.9e-07  Score=93.05  Aligned_cols=87  Identities=16%  Similarity=0.092  Sum_probs=61.1

Q ss_pred             cccccCcccCCCCccceeeecC-CCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCccccccC
Q 044550          418 WIREIPENVGKLIHLKYLNLSE-LRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYMP  494 (662)
Q Consensus       418 ~~~~lp~~i~~l~~Lr~L~L~~-~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~p  494 (662)
                      .+..+|. +..+.+|++|+|++ |.++.+|+ .+++|.+|+.|+|++|. +..+| ..+.+|++|++|+|++|.+ ..+|
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l-~~~~   96 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNAL-ESLS   96 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSCC-SCCC
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeCCCCcc-ceeC
Confidence            5667777 77788888888885 77887764 67788888888888877 55554 4567788888888888765 5566


Q ss_pred             CcCCCCCCCCccC
Q 044550          495 IGISRLTSLRTLE  507 (662)
Q Consensus       495 ~~i~~L~~L~~L~  507 (662)
                      ..+.....|+.|+
T Consensus        97 ~~~~~~~~L~~l~  109 (347)
T 2ifg_A           97 WKTVQGLSLQELV  109 (347)
T ss_dssp             STTTCSCCCCEEE
T ss_pred             HHHcccCCceEEE
Confidence            5443333377765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.12  E-value=3.7e-06  Score=86.39  Aligned_cols=83  Identities=14%  Similarity=0.183  Sum_probs=67.6

Q ss_pred             hhcCcccccc---c-ccccccC-cccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCccccccccc
Q 044550          406 FSKLVFLRAL---R-NWIREIP-ENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNM  479 (662)
Q Consensus       406 ~~~l~~Lrvl---~-~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L  479 (662)
                      +..+..|+.|   + |.+..+| ..|+.|.+|++|+|++|.++.+|+ .|++|.+|+.|+|++|. +..+|..+....+|
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~L  105 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSL  105 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCC
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc-cceeCHHHcccCCc
Confidence            4444445554   4 7888887 568999999999999999998865 67999999999999998 88888776555559


Q ss_pred             cEEecCCCcc
Q 044550          480 RSLLNDGTYL  489 (662)
Q Consensus       480 ~~L~l~~~~~  489 (662)
                      +.|++.+|..
T Consensus       106 ~~l~l~~N~~  115 (347)
T 2ifg_A          106 QELVLSGNPL  115 (347)
T ss_dssp             CEEECCSSCC
T ss_pred             eEEEeeCCCc
Confidence            9999998864

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=2.8e-06  Score=86.66  Aligned_cols=53  Identities=8%  Similarity=0.111  Sum_probs=32.8

Q ss_pred             CCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550          452 LYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL  506 (662)
Q Consensus       452 L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L  506 (662)
                      +.+|+.|++.+ . ++.++. .+..+++|+.|+++++.....-+..|....++..+
T Consensus       100 ~~~L~~l~L~~-~-i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l  153 (329)
T 3sb4_A          100 KQTLEKVILSE-K-IKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFI  153 (329)
T ss_dssp             CTTCCC-CBCT-T-CCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEE
T ss_pred             cCCCcEEECCc-c-ccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEe
Confidence            78888888877 4 666654 46777888888887775533333445554444444

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.06  E-value=2e-06  Score=88.35  Aligned_cols=61  Identities=25%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             cchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcC--CCCCCCCccCc
Q 044550          445 IPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGI--SRLTSLRTLEK  508 (662)
Q Consensus       445 lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i--~~L~~L~~L~~  508 (662)
                      ++..+..+++|+.|+|++|..+ .+|. + .+++|++|.+..|.........+  ..+++|+.|++
T Consensus       164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L  226 (362)
T 2ra8_A          164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVL  226 (362)
T ss_dssp             CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEE
T ss_pred             HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEE
Confidence            4455566677777777766422 3443 3 36677777776654311111112  24566666654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.89  E-value=1.1e-06  Score=91.09  Aligned_cols=60  Identities=23%  Similarity=0.337  Sum_probs=37.3

Q ss_pred             CCccceeeecCCCCcccc-hhhhc-----CCCccEEeccCCCCCcc--CCccccccccccEEecCCCcc
Q 044550          429 LIHLKYLNLSELRIERIP-ETLCE-----LYNLQKLDIRGCQYLRG--LPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~lp-~~i~~-----L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~  489 (662)
                      +.+|++|+|++|.++... ..+..     ..+|+.|++++|. +..  ++.-...+++|++|++++|..
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l  138 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSL  138 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCC
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCC
Confidence            456888888888876421 22222     2688888888887 422  111123466788888888854

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.65  E-value=0.00013  Score=74.21  Aligned_cols=168  Identities=14%  Similarity=0.033  Sum_probs=94.6

Q ss_pred             Ccccccc--cccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCC-----------------CCCc
Q 044550          409 LVFLRAL--RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGC-----------------QYLR  467 (662)
Q Consensus       409 l~~Lrvl--~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~-----------------~~l~  467 (662)
                      +..|+.+  ...++.+++ .|.++.+|+.|+++.|.+..+++ .+.++.++..+.+...                 ..+.
T Consensus       100 ~~~L~~l~L~~~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~  179 (329)
T 3sb4_A          100 KQTLEKVILSEKIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLE  179 (329)
T ss_dssp             CTTCCC-CBCTTCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCE
T ss_pred             cCCCcEEECCccccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccc
Confidence            7777776  236777754 47788999999999988776654 4556666666554431                 1111


Q ss_pred             ---------cCCccc----------------------------cccccccEEecCCCccccccCC-cCCCCCCCCccCce
Q 044550          468 ---------GLPAGI----------------------------RKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKF  509 (662)
Q Consensus       468 ---------~lP~~i----------------------------~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~  509 (662)
                               .+|..+                            ..+++|+.|++++|.. ..+|. .|..+++|+.|.+.
T Consensus       180 ~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i-~~I~~~aF~~~~~L~~l~l~  258 (329)
T 3sb4_A          180 TTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNA-TTIPDFTFAQKKYLLKIKLP  258 (329)
T ss_dssp             EEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCC-CEECTTTTTTCTTCCEEECC
T ss_pred             eeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCc-ceecHhhhhCCCCCCEEECC
Confidence                     001000                            0267899999988764 56664 47888888888532


Q ss_pred             eecCccCCCCccCccccccCc-ccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhh
Q 044550          510 VVGGGVDGGGTCRLESLKNLQ-LLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLE  588 (662)
Q Consensus       510 ~~~~~~~~~~~~~l~~L~~L~-~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~  588 (662)
                        .+ ........+..+.+|+ .+   .+..        +........+.+|.+|+.|.+..+....         -...
T Consensus       259 --~n-i~~I~~~aF~~~~~L~~~l---~l~~--------~l~~I~~~aF~~c~~L~~l~l~~n~i~~---------I~~~  315 (329)
T 3sb4_A          259 --HN-LKTIGQRVFSNCGRLAGTL---ELPA--------SVTAIEFGAFMGCDNLRYVLATGDKITT---------LGDE  315 (329)
T ss_dssp             --TT-CCEECTTTTTTCTTCCEEE---EECT--------TCCEECTTTTTTCTTEEEEEECSSCCCE---------ECTT
T ss_pred             --cc-cceehHHHhhCChhccEEE---EEcc--------cceEEchhhhhCCccCCEEEeCCCccCc---------cchh
Confidence              21 2222233455555444 33   2221        1122333456788888888875443200         0012


Q ss_pred             hCCCCCCCcEEE
Q 044550          589 ALQPPLNVEELE  600 (662)
Q Consensus       589 ~l~~~~~L~~L~  600 (662)
                      .+..+++|+.++
T Consensus       316 aF~~~~~L~~ly  327 (329)
T 3sb4_A          316 LFGNGVPSKLIY  327 (329)
T ss_dssp             TTCTTCCCCEEE
T ss_pred             hhcCCcchhhhc
Confidence            455667888775

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.64  E-value=0.00029  Score=73.55  Aligned_cols=178  Identities=13%  Similarity=0.093  Sum_probs=78.6

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCCc-CCCCCCC
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSL  503 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L  503 (662)
                      |.++.+|+.++++.|.++.+|...-...+|+.+.+..+  +..++. .+..+++|+.+.+..+  +..++.. |.. ++|
T Consensus       176 F~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~--l~~I~~~aF~~~~~L~~l~l~~~--l~~I~~~aF~~-~~L  250 (401)
T 4fdw_A          176 FYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT--LKEIGSQAFLKTSQLKTIEIPEN--VSTIGQEAFRE-SGI  250 (401)
T ss_dssp             TTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCCEECCTT--CCEECTTTTTT-CCC
T ss_pred             hhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc--hheehhhHhhCCCCCCEEecCCC--ccCcccccccc-CCc
Confidence            44455555555555555555554333455555555432  333332 3445555555555543  2333322 222 444


Q ss_pred             CccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhH
Q 044550          504 RTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKD  583 (662)
Q Consensus       504 ~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~  583 (662)
                      +.+.+   .+.........+..+.+|+.+   .+.+-.  .............+.+|.+|+.+.+..+ . .    .   
T Consensus       251 ~~i~l---p~~i~~I~~~aF~~c~~L~~l---~l~~~~--~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i-~----~---  313 (401)
T 4fdw_A          251 TTVKL---PNGVTNIASRAFYYCPELAEV---TTYGST--FNDDPEAMIHPYCLEGCPKLARFEIPES-I-R----I---  313 (401)
T ss_dssp             SEEEE---ETTCCEECTTTTTTCTTCCEE---EEESSC--CCCCTTCEECTTTTTTCTTCCEECCCTT-C-C----E---
T ss_pred             cEEEe---CCCccEEChhHhhCCCCCCEE---EeCCcc--ccCCcccEECHHHhhCCccCCeEEeCCc-e-E----E---
Confidence            44432   111111112223333333322   221100  0000011123334556667776665411 0 0    0   


Q ss_pred             HHHhhhCCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCCC
Q 044550          584 KQLLEALQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       584 ~~~l~~l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~~  628 (662)
                       -....+..+.+|+.+.|..+ ...++ ..+..+ +|+.|++.+|.
T Consensus       314 -I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~  356 (401)
T 4fdw_A          314 -LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTT  356 (401)
T ss_dssp             -ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSS
T ss_pred             -EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCC
Confidence             00123455677888888544 23333 344466 88888888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.57  E-value=7.3e-05  Score=72.74  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=61.4

Q ss_pred             CCCCccceeeecCCCCccc---chhhhcCCCccEEeccCCCCCccCCccccccc--cccEEecCCCccccccCC------
Q 044550          427 GKLIHLKYLNLSELRIERI---PETLCELYNLQKLDIRGCQYLRGLPAGIRKLM--NMRSLLNDGTYLLKYMPI------  495 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~l---p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~--~L~~L~l~~~~~~~~~p~------  495 (662)
                      .++++|++|+|++|.++.+   |..+.++++|+.|+|++|. +..+ ..+..+.  +|+.|++++|.....+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            3578999999999998865   4677899999999999988 6666 3456666  899999999987555552      


Q ss_pred             -cCCCCCCCCccCc
Q 044550          496 -GISRLTSLRTLEK  508 (662)
Q Consensus       496 -~i~~L~~L~~L~~  508 (662)
                       .+..+++|+.|+.
T Consensus       245 ~il~~~P~L~~LDg  258 (267)
T 3rw6_A          245 AIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHCTTCCEESS
T ss_pred             HHHHHCcccCeECC
Confidence             2566777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.43  E-value=0.00013  Score=74.76  Aligned_cols=170  Identities=14%  Similarity=0.098  Sum_probs=91.8

Q ss_pred             cchhhhcCCCccEEeccCCCC---------CccCCccccccccccEEecCCCccccccCCcCCCCCCCCccCceeecCcc
Q 044550          445 IPETLCELYNLQKLDIRGCQY---------LRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGV  515 (662)
Q Consensus       445 lp~~i~~L~~L~~L~l~~~~~---------l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~  515 (662)
                      +++++.++++|+.|.+.+...         ...++..+..+++|+.|.+++|.. ..+|. + .+++|++|++.  .+..
T Consensus       131 L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~--~~~l  205 (362)
T 2ra8_A          131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN-LSIGK-K-PRPNLKSLEII--SGGL  205 (362)
T ss_dssp             HHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT-CBCCS-C-BCTTCSEEEEE--CSBC
T ss_pred             HHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC-ceecc-c-cCCCCcEEEEe--cCCC
Confidence            344556667777777654321         123445566789999999988743 24444 3 37889998743  2222


Q ss_pred             CCCCccCccccc--cCcccCccccccCCC-CCCCCChhhhhhc-cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCC
Q 044550          516 DGGGTCRLESLK--NLQLLRKCSIEGLKG-LSNVSHVDEVERL-QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ  591 (662)
Q Consensus       516 ~~~~~~~l~~L~--~L~~L~~L~i~~~~~-~~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~  591 (662)
                      .   ...+..+.  .+++|+.|.++.... ...-.....+... ....+++|+.|.+..+..     . ......+....
T Consensus       206 ~---~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i-----~-~~~~~~la~a~  276 (362)
T 2ra8_A          206 P---DSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE-----Q-NVVVEMFLESD  276 (362)
T ss_dssp             C---HHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT-----H-HHHHHHHHHCS
T ss_pred             C---hHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC-----c-hHHHHHHHhCc
Confidence            1   22222222  344555554431100 0001111111111 113478999999987653     0 01112222223


Q ss_pred             CCCCCcEEEEeecCCCC-----CCcccccccCccEEEecCCC
Q 044550          592 PPLNVEELEIESYRGNI-----FPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       592 ~~~~L~~L~l~~~~~~~-----lP~~i~~l~~L~~L~L~~~~  628 (662)
                      .+++|++|+|+.|.+..     ++..+..+++|+.|+|++|.
T Consensus       277 ~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~  318 (362)
T 2ra8_A          277 ILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY  318 (362)
T ss_dssp             SGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred             cCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence            46889999998876433     34445578899999999886

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.29  E-value=0.00017  Score=64.97  Aligned_cols=61  Identities=13%  Similarity=0.160  Sum_probs=40.9

Q ss_pred             CCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccC-Ccccccc----ccccEEecCCCcc
Q 044550          429 LIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGL-PAGIRKL----MNMRSLLNDGTYL  489 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L----~~L~~L~l~~~~~  489 (662)
                      -.+|++|++++|.|+.. -..+.++++|+.|+|++|..++.- -..+..+    ++|++|++++|..
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~  126 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGN  126 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTT
T ss_pred             CceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCc
Confidence            35788999999887632 245678888999999888755431 0123333    3688888888853

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.28  E-value=0.00078  Score=70.24  Aligned_cols=185  Identities=15%  Similarity=0.147  Sum_probs=98.2

Q ss_pred             cccccCcc-cCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-
Q 044550          418 WIREIPEN-VGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP-  494 (662)
Q Consensus       418 ~~~~lp~~-i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-  494 (662)
                      .++.++.. |.+ .+|+.+.+.. .++.++ ..+.++.+|+.+++.++. +..+|.......+|+.+.+..+  +..++ 
T Consensus       145 ~i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~-l~~I~~~aF~~~~L~~l~lp~~--l~~I~~  219 (401)
T 4fdw_A          145 GLKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTK-ITKLPASTFVYAGIEEVLLPVT--LKEIGS  219 (401)
T ss_dssp             TCCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSC-CSEECTTTTTTCCCSEEECCTT--CCEECT
T ss_pred             CccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCc-ceEechhhEeecccCEEEeCCc--hheehh
Confidence            45555433 333 4677777775 566664 367778888888887766 7777766555677888887754  34444 


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI  574 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  574 (662)
                      ..|..+++|+.+.+-   ..........+.. .   .|+.+.+..        +...+....+.+|.+|+.+.+..+...
T Consensus       220 ~aF~~~~~L~~l~l~---~~l~~I~~~aF~~-~---~L~~i~lp~--------~i~~I~~~aF~~c~~L~~l~l~~~~~~  284 (401)
T 4fdw_A          220 QAFLKTSQLKTIEIP---ENVSTIGQEAFRE-S---GITTVKLPN--------GVTNIASRAFYYCPELAEVTTYGSTFN  284 (401)
T ss_dssp             TTTTTCTTCCCEECC---TTCCEECTTTTTT-C---CCSEEEEET--------TCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred             hHhhCCCCCCEEecC---CCccCcccccccc-C---CccEEEeCC--------CccEEChhHhhCCCCCCEEEeCCcccc
Confidence            346677777776421   1111111112222 2   233322211        112223344667778888777643220


Q ss_pred             CCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc-ccccccCccEEEecCC
Q 044550          575 EGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK-WLTSLTNLRELKLSLC  627 (662)
Q Consensus       575 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~-~i~~l~~L~~L~L~~~  627 (662)
                      .....    .-....+..+++|+.+.+..+ ...++. .+..+++|+.|.|..+
T Consensus       285 ~~~~~----~I~~~aF~~c~~L~~l~l~~~-i~~I~~~aF~~c~~L~~l~lp~~  333 (401)
T 4fdw_A          285 DDPEA----MIHPYCLEGCPKLARFEIPES-IRILGQGLLGGNRKVTQLTIPAN  333 (401)
T ss_dssp             CCTTC----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCCSCCEEEECTT
T ss_pred             CCccc----EECHHHhhCCccCCeEEeCCc-eEEEhhhhhcCCCCccEEEECcc
Confidence            00000    000123455677777777643 333433 3446778888887554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.24  E-value=1.7e-05  Score=81.98  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=46.6

Q ss_pred             CCccceeeecCCCCcc--cchhhhcCCCccEEeccCCCCCccCC-ccc-----cccccccEEecCCCcccc----ccCCc
Q 044550          429 LIHLKYLNLSELRIER--IPETLCELYNLQKLDIRGCQYLRGLP-AGI-----RKLMNMRSLLNDGTYLLK----YMPIG  496 (662)
Q Consensus       429 l~~Lr~L~L~~~~i~~--lp~~i~~L~~L~~L~l~~~~~l~~lP-~~i-----~~L~~L~~L~l~~~~~~~----~~p~~  496 (662)
                      ..+|++|+|++|.+..  +..-...+.+|+.|++++|. +.... ..+     ...++|++|++++|....    .++..
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~  178 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEG  178 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHH
Confidence            3689999999998763  22223346688999999887 43221 122     235678888888885421    12233


Q ss_pred             CCCCCCCCccC
Q 044550          497 ISRLTSLRTLE  507 (662)
Q Consensus       497 i~~L~~L~~L~  507 (662)
                      +..+++|++|+
T Consensus       179 L~~~~~L~~L~  189 (372)
T 3un9_A          179 LAGNTSVTHLS  189 (372)
T ss_dssp             HHTCSSCCEEE
T ss_pred             HhcCCCcCEEe
Confidence            34445555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.63  E-value=0.0008  Score=60.61  Aligned_cols=83  Identities=19%  Similarity=0.106  Sum_probs=47.7

Q ss_pred             cCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCC----CCCCcEEEEeecCCC
Q 044550          532 LRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQP----PLNVEELEIESYRGN  607 (662)
Q Consensus       532 L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~----~~~L~~L~l~~~~~~  607 (662)
                      |..|+++++   .    ..+.....+..+++|+.|+++.|..+        ....+..+..    .++|++|+|++|...
T Consensus        63 L~~LDLs~~---~----Itd~GL~~L~~~~~L~~L~L~~C~~I--------tD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           63 IQAIDATDS---C----IMSIGFDHMEGLQYVEKIRLCKCHYI--------EDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             EEEEEEESC---C----CCGGGGGGGTTCSCCCEEEEESCTTC--------CHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             EeEEeCcCC---C----ccHHHHHHhcCCCCCCEEEeCCCCcc--------CHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            555666665   1    22223334567788888888877532        1223333333    246888888887532


Q ss_pred             CCCc---ccccccCccEEEecCCCCC
Q 044550          608 IFPK---WLTSLTNLRELKLSLCVNC  630 (662)
Q Consensus       608 ~lP~---~i~~l~~L~~L~L~~~~~~  630 (662)
                      + ..   .+..+++|++|+|++|...
T Consensus       128 T-D~Gl~~L~~~~~L~~L~L~~c~~I  152 (176)
T 3e4g_A          128 T-DKGIIALHHFRNLKYLFLSDLPGV  152 (176)
T ss_dssp             C-HHHHHHGGGCTTCCEEEEESCTTC
T ss_pred             C-HHHHHHHhcCCCCCEEECCCCCCC
Confidence            2 11   2346778888888888643

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.40  E-value=0.0018  Score=62.92  Aligned_cols=76  Identities=21%  Similarity=0.190  Sum_probs=55.6

Q ss_pred             cCcccccc---ccccccc---CcccCCCCccceeeecCCCCcccchhhhcCC--CccEEeccCCCCCccCCc-------c
Q 044550          408 KLVFLRAL---RNWIREI---PENVGKLIHLKYLNLSELRIERIPETLCELY--NLQKLDIRGCQYLRGLPA-------G  472 (662)
Q Consensus       408 ~l~~Lrvl---~~~~~~l---p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~--~L~~L~l~~~~~l~~lP~-------~  472 (662)
                      ++..|+.|   +|.+..+   |..+..+++|++|+|++|.|+.+ ..+..+.  +|+.|++++|.....+|.       .
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            33444444   5666554   45566899999999999999987 4466666  999999999995455652       3


Q ss_pred             ccccccccEEec
Q 044550          473 IRKLMNMRSLLN  484 (662)
Q Consensus       473 i~~L~~L~~L~l  484 (662)
                      +..+++|+.|+-
T Consensus       247 l~~~P~L~~LDg  258 (267)
T 3rw6_A          247 RERFPKLLRLDG  258 (267)
T ss_dssp             HHHCTTCCEESS
T ss_pred             HHHCcccCeECC
Confidence            678899999874

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.31  E-value=0.026  Score=53.56  Aligned_cols=76  Identities=12%  Similarity=0.038  Sum_probs=52.5

Q ss_pred             CCCCceEEEEcccHHHH-hh-hCCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHH
Q 044550          191 GLHGSKIFVTTRNESVA-RM-MGSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIG  268 (662)
Q Consensus       191 ~~~gSrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig  268 (662)
                      ...+.+||+||+..... .. ......+++.+++.++.++++.+.+..... ..   -.+..+.|++.|+|.|..+..+.
T Consensus       153 ~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~~~~~~~~  228 (250)
T 1njg_A          153 PPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI-AH---EPRALQLLARAAEGSLRDALSLT  228 (250)
T ss_dssp             CCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTC-CB---CHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHcCCCHHHHHHHH
Confidence            34567888888765322 11 122358999999999999999987754321 11   13567889999999999887765


Q ss_pred             Hh
Q 044550          269 NL  270 (662)
Q Consensus       269 ~~  270 (662)
                      ..
T Consensus       229 ~~  230 (250)
T 1njg_A          229 DQ  230 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.27  E-value=0.00067  Score=62.37  Aligned_cols=64  Identities=19%  Similarity=0.229  Sum_probs=45.0

Q ss_pred             ccCCCCccceeeecCC-CCc-----ccchhhhcCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc
Q 044550          425 NVGKLIHLKYLNLSEL-RIE-----RIPETLCELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       425 ~i~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  489 (662)
                      .+...+.|++|+|++| .+.     .+...+...++|++|+|++|. +..     +...+...++|++|++++|..
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~i  105 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFI  105 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCcC
Confidence            3455778888888888 765     355667777888888888887 432     334455567888888888854

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.25  E-value=0.0011  Score=60.91  Aligned_cols=83  Identities=16%  Similarity=0.108  Sum_probs=58.7

Q ss_pred             hhcCcccccc---cc-ccc-----ccCcccCCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCcc---
Q 044550          406 FSKLVFLRAL---RN-WIR-----EIPENVGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRG---  468 (662)
Q Consensus       406 ~~~l~~Lrvl---~~-~~~-----~lp~~i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~---  468 (662)
                      +...+.|+.+   +| .+.     .+...+....+|++|+|++|.|.     .+...+...++|++|+|++|. +..   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g~  110 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSGI  110 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHHH
Confidence            4444555555   34 443     24455667789999999999876     355667778899999999987 543   


Q ss_pred             --CCccccccccccEEec--CCCcc
Q 044550          469 --LPAGIRKLMNMRSLLN--DGTYL  489 (662)
Q Consensus       469 --lP~~i~~L~~L~~L~l--~~~~~  489 (662)
                        +...+...++|++|++  ++|..
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i  135 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPL  135 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCC
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCC
Confidence              4556677788999999  66754

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=94.59  E-value=0.19  Score=46.71  Aligned_cols=115  Identities=10%  Similarity=-0.021  Sum_probs=76.6

Q ss_pred             CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------------------------------
Q 044550          143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------------------------------  181 (662)
Q Consensus       143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------------------------------  181 (662)
                      .+++|+++.++.+.+++.....      ..+-|+|..|+                                         
T Consensus        17 ~~~~g~~~~~~~l~~~l~~~~~------~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (226)
T 2chg_A           17 DEVVGQDEVIQRLKGYVERKNI------PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIK   90 (226)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCC------CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHhCCCC------CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHH
Confidence            4689999999999999975432      23789999998                                         


Q ss_pred             ------------------ccch-----------hhhhcCCCCceEEEEcccHHHH-hh-hCCCCeeeCCCCChHHHHHHH
Q 044550          182 ------------------EPFF-----------LRLKNGLHGSKIFVTTRNESVA-RM-MGSTNIISIKQLAEEECWSLF  230 (662)
Q Consensus       182 ------------------~~F~-----------~~l~~~~~gSrIivTTR~~~v~-~~-~~~~~~~~l~~L~~~~s~~Lf  230 (662)
                                        ++++           ..+.....+.++|+||+...-. .. ......+.+.+++.++..+++
T Consensus        91 ~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l  170 (226)
T 2chg_A           91 EFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRL  170 (226)
T ss_dssp             HHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred             HHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHH
Confidence                              0000           2233334567888888765321 11 111238999999999999999


Q ss_pred             HHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHH
Q 044550          231 KQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVI  267 (662)
Q Consensus       231 ~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~i  267 (662)
                      .+.+...+. ..   -.+..+.+++.++|.|..+..+
T Consensus       171 ~~~~~~~~~-~~---~~~~~~~l~~~~~g~~r~l~~~  203 (226)
T 2chg_A          171 LEICEKEGV-KI---TEDGLEALIYISGGDFRKAINA  203 (226)
T ss_dssp             HHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHH
Confidence            887643221 11   1356678889999999865544

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=94.17  E-value=0.084  Score=52.84  Aligned_cols=53  Identities=17%  Similarity=0.007  Sum_probs=39.0

Q ss_pred             CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHh
Q 044550          214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNL  270 (662)
Q Consensus       214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~  270 (662)
                      .++.+.+++.++..+++.+.+..... ..   -.+....++++|.|.|-.+..+...
T Consensus       161 ~~i~l~~~~~~e~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~l~~~l~~  213 (324)
T 1hqc_A          161 IVEHLEYYTPEELAQGVMRDARLLGV-RI---TEEAALEIGRRSRGTMRVAKRLFRR  213 (324)
T ss_dssp             CEEECCCCCHHHHHHHHHHHHHTTTC-CC---CHHHHHHHHHHSCSCHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHhcCC-CC---CHHHHHHHHHHccCCHHHHHHHHHH
Confidence            58999999999999988887653221 11   1356788999999999887665543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.07  E-value=0.27  Score=50.90  Aligned_cols=67  Identities=12%  Similarity=0.037  Sum_probs=44.3

Q ss_pred             EEEEcccHHHHhhhC--------C-CCeeeCCCCChHHHHHHHHHHh---hcCCCCCCccchHHHHHHHHHHhc------
Q 044550          197 IFVTTRNESVARMMG--------S-TNIISIKQLAEEECWSLFKQLA---FFGRSFEDREKLEPMGRKIARKCK------  258 (662)
Q Consensus       197 IivTTR~~~v~~~~~--------~-~~~~~l~~L~~~~s~~Lf~~~a---f~~~~~~~~~~~~~~~~~iv~~c~------  258 (662)
                      ||+||+..++...+.        . ...+.+.+|+.++++++|...+   |....     --.+....|++.|+      
T Consensus       182 lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~  256 (412)
T 1w5s_A          182 FLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTV-----WEPRHLELISDVYGEDKGGD  256 (412)
T ss_dssp             EEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTS-----CCHHHHHHHHHHHCGGGTSC
T ss_pred             EEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHhccCC
Confidence            788887665432221        1 2239999999999999997653   32111     11456788999999      


Q ss_pred             CCchhHHHHH
Q 044550          259 GLPLAAKVIG  268 (662)
Q Consensus       259 GlPLai~~ig  268 (662)
                      |.|..+..+.
T Consensus       257 G~p~~~~~l~  266 (412)
T 1w5s_A          257 GSARRAIVAL  266 (412)
T ss_dssp             CCHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            9997655443

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=93.79  E-value=0.49  Score=47.52  Aligned_cols=75  Identities=15%  Similarity=0.115  Sum_probs=52.2

Q ss_pred             CCceEEEEcccHHHHhhh-----------CC-CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550          193 HGSKIFVTTRNESVARMM-----------GS-TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL  260 (662)
Q Consensus       193 ~gSrIivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl  260 (662)
                      .+.++|+|++...+...+           +. ...+.+.+|+.+|+.+++.... .......   -.+....|+..|+|.
T Consensus       163 ~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~-~~~~~~~---~~~~~~~i~~~tgG~  238 (350)
T 2qen_A          163 PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGF-REVNLDV---PENEIEEAVELLDGI  238 (350)
T ss_dssp             TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHH-HTTTCCC---CHHHHHHHHHHHTTC
T ss_pred             CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHH-HHcCCCC---CHHHHHHHHHHhCCC
Confidence            467889998876542211           11 2479999999999999987643 2221111   135678999999999


Q ss_pred             chhHHHHHHhh
Q 044550          261 PLAAKVIGNLL  271 (662)
Q Consensus       261 PLai~~ig~~L  271 (662)
                      |+++..++..+
T Consensus       239 P~~l~~~~~~~  249 (350)
T 2qen_A          239 PGWLVVFGVEY  249 (350)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=93.29  E-value=0.11  Score=44.06  Aligned_cols=34  Identities=18%  Similarity=0.175  Sum_probs=16.0

Q ss_pred             ccceeeecCCCCcccchh-hhcCCCccEEeccCCC
Q 044550          431 HLKYLNLSELRIERIPET-LCELYNLQKLDIRGCQ  464 (662)
Q Consensus       431 ~Lr~L~L~~~~i~~lp~~-i~~L~~L~~L~l~~~~  464 (662)
                      +|++|+|++|.|+.+|.. +..+.+|++|+|.+|.
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            345555555555554432 3444444444444443

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=92.97  E-value=0.11  Score=44.23  Aligned_cols=54  Identities=17%  Similarity=0.305  Sum_probs=44.1

Q ss_pred             ceeeecCCCCc--ccchhhhcCCCccEEeccCCCCCccCCcc-ccccccccEEecCCCcc
Q 044550          433 KYLNLSELRIE--RIPETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       433 r~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~-i~~L~~L~~L~l~~~~~  489 (662)
                      ..++-+++.++  .+|..+.  .+|++|+|++|. +..+|.+ +..+++|+.|+|++|..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~-l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNN-LTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSC-CSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCc-CCccChhhhhhccccCEEEecCCCe
Confidence            36788888888  8887543  479999999998 8888775 57899999999999853

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=91.29  E-value=0.27  Score=49.57  Aligned_cols=75  Identities=13%  Similarity=0.148  Sum_probs=52.4

Q ss_pred             CCceEEEEcccHHHHhhh-----------CC-CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCC
Q 044550          193 HGSKIFVTTRNESVARMM-----------GS-TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGL  260 (662)
Q Consensus       193 ~gSrIivTTR~~~v~~~~-----------~~-~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~Gl  260 (662)
                      .+.++|+|++.......+           +. ...+.+.+|+.+++.+++...+-....  .....    ..|+..|+|.
T Consensus       169 ~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~--~~~~~----~~i~~~t~G~  242 (357)
T 2fna_A          169 KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADI--DFKDY----EVVYEKIGGI  242 (357)
T ss_dssp             TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTC--CCCCH----HHHHHHHCSC
T ss_pred             CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCC--CCCcH----HHHHHHhCCC
Confidence            467899999976543211           11 257899999999999999874321111  11222    7899999999


Q ss_pred             chhHHHHHHhhcC
Q 044550          261 PLAAKVIGNLLRS  273 (662)
Q Consensus       261 PLai~~ig~~L~~  273 (662)
                      |+++..++..+..
T Consensus       243 P~~l~~~~~~~~~  255 (357)
T 2fna_A          243 PGWLTYFGFIYLD  255 (357)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcc
Confidence            9999999877643

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=89.43  E-value=2.6  Score=41.48  Aligned_cols=74  Identities=8%  Similarity=0.083  Sum_probs=47.1

Q ss_pred             CCceEEEEcccHH-HHhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchh-HHHHHH
Q 044550          193 HGSKIFVTTRNES-VARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLA-AKVIGN  269 (662)
Q Consensus       193 ~gSrIivTTR~~~-v~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLa-i~~ig~  269 (662)
                      .++++|+||.... +...+ .....+++.+++.++..+++...+...+. ..   -.+....+++.|+|.|.. +..+..
T Consensus       136 ~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~~l~~~~~G~~r~a~~~l~~  211 (323)
T 1sxj_B          136 NSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV-KY---TNDGLEAIIFTAEGDMRQAINNLQS  211 (323)
T ss_dssp             TTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-CB---CHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4567777776532 21111 12348999999999999999887643221 11   135568899999999954 444443


Q ss_pred             h
Q 044550          270 L  270 (662)
Q Consensus       270 ~  270 (662)
                      .
T Consensus       212 ~  212 (323)
T 1sxj_B          212 T  212 (323)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.22  E-value=1.2  Score=45.75  Aligned_cols=37  Identities=8%  Similarity=0.175  Sum_probs=19.4

Q ss_pred             CCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCC
Q 044550          590 LQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLC  627 (662)
Q Consensus       590 l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~  627 (662)
                      +..+.+|+++.|... ...++ ..+..+++|+.+++..+
T Consensus       316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~  353 (394)
T 4fs7_A          316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS  353 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred             hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc
Confidence            344566666666432 22232 23345677777777544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=88.10  E-value=1.9  Score=44.20  Aligned_cols=37  Identities=8%  Similarity=0.065  Sum_probs=19.4

Q ss_pred             CCCCCCCcEEEEeecCCCCCC-cccccccCccEEEecCC
Q 044550          590 LQPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSLC  627 (662)
Q Consensus       590 l~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~~  627 (662)
                      +..+.+|+++.+..+ ...++ ..+..+++|+.++|..+
T Consensus       339 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          339 FRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             TTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            344556666665433 22222 23446677777777544

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=86.41  E-value=3.2  Score=41.97  Aligned_cols=70  Identities=11%  Similarity=0.004  Sum_probs=43.4

Q ss_pred             CceEEEEcccHHHHhhhCC-------CCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhc---CCchh
Q 044550          194 GSKIFVTTRNESVARMMGS-------TNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCK---GLPLA  263 (662)
Q Consensus       194 gSrIivTTR~~~v~~~~~~-------~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~---GlPLa  263 (662)
                      +..||+||+.......+..       ...+.+.+++.++.++++.+.+-....  ...--.+..+.+++.++   |.|..
T Consensus       163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~G~~r~  240 (386)
T 2qby_A          163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFK--PGVLPDNVIKLCAALAAREHGDARR  240 (386)
T ss_dssp             -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBC--SSCSCHHHHHHHHHHHHHTTCCHHH
T ss_pred             eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhcc--CCCCCHHHHHHHHHHHHHhcCCHHH
Confidence            4567888876654333221       147999999999999999886431110  01112455677777777   99884


Q ss_pred             HH
Q 044550          264 AK  265 (662)
Q Consensus       264 i~  265 (662)
                      +.
T Consensus       241 ~~  242 (386)
T 2qby_A          241 AL  242 (386)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=85.61  E-value=5.8  Score=40.08  Aligned_cols=88  Identities=7%  Similarity=-0.103  Sum_probs=50.5

Q ss_pred             CCceEEEEcccHHH--------HhhhCCCCeeeCCCCChHHHHHHHHHHhh---cCCCCCCccchHHHHHHHHHHhc---
Q 044550          193 HGSKIFVTTRNESV--------ARMMGSTNIISIKQLAEEECWSLFKQLAF---FGRSFEDREKLEPMGRKIARKCK---  258 (662)
Q Consensus       193 ~gSrIivTTR~~~v--------~~~~~~~~~~~l~~L~~~~s~~Lf~~~af---~~~~~~~~~~~~~~~~~iv~~c~---  258 (662)
                      .+..+|.||+....        ...++ ...+.+.+++.++..+++...+-   ....  ..+   +..+.++++++   
T Consensus       166 ~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~~~~~~~~~--~~~---~~~~~l~~~~~~~~  239 (387)
T 2v1u_A          166 VWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRAEEAFNPGV--LDP---DVVPLCAALAAREH  239 (387)
T ss_dssp             --CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHHHHHBCTTT--BCS---SHHHHHHHHHHSSS
T ss_pred             ceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHHhhccCCC--CCH---HHHHHHHHHHHHhc
Confidence            34567778776532        22221 14799999999999999988753   2221  122   34567788887   


Q ss_pred             CCch-hHHHHHHhhc-----CC--CCHHHHHHHHhh
Q 044550          259 GLPL-AAKVIGNLLR-----SK--STVKEWQRILES  286 (662)
Q Consensus       259 GlPL-ai~~ig~~L~-----~~--~~~~~w~~~l~~  286 (662)
                      |.|- |+..+..+..     +.  -+.+.++.++..
T Consensus       240 G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~  275 (387)
T 2v1u_A          240 GDARRALDLLRVAGEIAERRREERVRREHVYSARAE  275 (387)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence            9993 3333333221     21  256666666543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=85.55  E-value=6  Score=38.87  Aligned_cols=75  Identities=15%  Similarity=0.030  Sum_probs=48.3

Q ss_pred             CCCceEEEEcccHHH-Hhhh-CCCCeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHH
Q 044550          192 LHGSKIFVTTRNESV-ARMM-GSTNIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGN  269 (662)
Q Consensus       192 ~~gSrIivTTR~~~v-~~~~-~~~~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~  269 (662)
                      ..+.++|+||....- ...+ .....+.+.+++.++..+++...+...+. .   --.+..+.+++.++|-|-.+..+-.
T Consensus       138 ~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~-~---~~~~~~~~l~~~~~g~~r~~~~~l~  213 (327)
T 1iqp_A          138 SSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL-E---LTEEGLQAILYIAEGDMRRAINILQ  213 (327)
T ss_dssp             TTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC-E---ECHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC-C---CCHHHHHHHHHHCCCCHHHHHHHHH
Confidence            456788888765421 1111 11237899999999999999887653221 1   1135667889999999986655443


Q ss_pred             h
Q 044550          270 L  270 (662)
Q Consensus       270 ~  270 (662)
                      .
T Consensus       214 ~  214 (327)
T 1iqp_A          214 A  214 (327)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=82.66  E-value=5  Score=40.93  Aligned_cols=35  Identities=6%  Similarity=0.072  Sum_probs=17.4

Q ss_pred             CCCCCCcEEEEeecCCCCCC-cccccccCccEEEecC
Q 044550          591 QPPLNVEELEIESYRGNIFP-KWLTSLTNLRELKLSL  626 (662)
Q Consensus       591 ~~~~~L~~L~l~~~~~~~lP-~~i~~l~~L~~L~L~~  626 (662)
                      ..+.+|+++.|..+ ...++ ..+..+.+|+.+.|..
T Consensus       308 ~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~  343 (394)
T 4gt6_A          308 AGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPS  343 (394)
T ss_dssp             TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECT
T ss_pred             cCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECc
Confidence            34456666666432 12222 2333566677766653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	662
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	3e-14
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-04
d1m9la_	198	c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.004

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 71.4 bits (174), Expect = 3e-14
 Identities = 21/159 (13%), Positives = 38/159 (23%), Gaps = 11/159 (6%)

Query: 135 RTISLIDEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGIEPFFLRLKNGLHG 194
                               L   +     ++   L V        +             
Sbjct: 103 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFV-----FDDVVQEETIRWAQELR 157

Query: 195 SKIFVTTRNESVARMMGST-NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKI 253
            +  VTTR+  ++     T   I +  L  +EC+   +         E  E +     K 
Sbjct: 158 LRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDV---LNKT 214

Query: 254 ARKCKGLPLAAKVIGNLLRSKS--TVKEWQRILESEMWK 290
                G P    +       K+   + +    LES    
Sbjct: 215 IELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV 253

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 35/259 (13%), Positives = 79/259 (30%), Gaps = 14/259 (5%)

Query: 400 SILSELFSK-LVFLRALRNWIREIPENVGKLIHLKYLNLSELRI--ERIPETLCELYNLQ 456
            +   L S+ ++  R  R+++ +          +++++LS   I    +   L +   LQ
Sbjct: 15  DVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 74

Query: 457 KLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLEKFVVGGGVD 516
            L + G +    +   + K  N+  L   G        +     +  R  E  +      
Sbjct: 75  NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 134

Query: 517 GGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEG 576
                ++      + + + ++ G +     S +  + R         L   +    D   
Sbjct: 135 TEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQ 194

Query: 577 RRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPL 636
                   Q L           L             L  +  L+ L++   V    L  L
Sbjct: 195 EFFQLNYLQHL----------SLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLL 244

Query: 637 GK-LPLEKLQLKNLKSVKR 654
            + LP  ++   +  ++ R
Sbjct: 245 KEALPHLQINCSHFTTIAR 263

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 395 RFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYN 454
             N+   L  L  +L  L A  N + E+PE      +LK L++    +   P+    + +
Sbjct: 292 SNNKLIELPALPPRLERLIASFNHLAEVPELPQ---NLKQLHVEYNPLREFPDIPESVED 348

Query: 455 LQ 456
           L+
Sbjct: 349 LR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.002
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 429 LIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTY 488
              L+ LN+S  ++  +P        L++L       L  +P   + L      L+    
Sbjct: 283 PPSLEELNVSNNKLIELPALPP---RLERLIASFNH-LAEVPELPQNL----KQLHVEYN 334

Query: 489 LLKYMPIGISRLTSLR 504
            L+  P     +  LR
Sbjct: 335 PLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.9 bits (86), Expect = 0.003
 Identities = 21/101 (20%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 407 SKLVFLRALRNWIREIPENVGKLIH-------------LKYLNLSELRIERIPETLCELY 453
           SK  +  A   W R  P   G+                   L L+ L +  +PE      
Sbjct: 2   SKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPE---LPP 58

Query: 454 NLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP 494
           +L+ L       L  LP   + L ++    N+   L    P
Sbjct: 59  HLESLVASCNS-LTELPELPQSLKSLLVDNNNLKALSDLPP 98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)

Query: 421 EIPENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRGLP 470
            +P+ + +L  L  LN+S   +   IP+    L           + L G P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 409 LVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRG 468
           L +L    N I +I   V  L  L+ L  +  ++  +   L  L N+  L     Q +  
Sbjct: 309 LTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQ-ISD 365

Query: 469 LPAGIRKLMNMRSL-LND 485
           L   +  L  +  L LND
Sbjct: 366 LTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 396 FNRFSILSEL--FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELY 453
           FN  S +S +   +KL  L    N + ++   +  L ++ +L+    +I  +   L  L 
Sbjct: 316 FNNISDISPVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSAGHNQISDLTP-LANLT 373

Query: 454 NLQKLDIRG 462
            + +L +  
Sbjct: 374 RITQLGLND 382

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 386 GASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERI 445
             +   +I  F     +    ++ V L  +   I ++   +  L   K+L LS   IE+I
Sbjct: 4   ATTIKDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI 63

Query: 446 PETLCELYNLQKLDIRGCQY 465
              L  + NL+ L +     
Sbjct: 64  SS-LSGMENLRILSLGRNLI 82

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 4/77 (5%)

Query: 431 HLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAG-IRKLMNMRSLLNDGTYL 489
           HL+ +  S+L +E++P+ L    +   LD++  + +  +  G  + L N+ +L+     +
Sbjct: 11  HLRVVQCSDLGLEKVPKDLPP--DTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNKI 67

Query: 490 LKYMPIGISRLTSLRTL 506
            K  P   + L  L  L
Sbjct: 68  SKISPGAFAPLVKLERL 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	662
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	99.84
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.63
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.51
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.51
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.44
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.42
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.39
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.35
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.33
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.33
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.32
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.28
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.27
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.25
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.24
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.14
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.04
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.02
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.0
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.95
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.89
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.88
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.79
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.76
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.67
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.63
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.6
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.57
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.26
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.96
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.71
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.45
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.52
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.49
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.39
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.25
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	90.17
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	90.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	87.33
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	85.03
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	82.92

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.84  E-value=1.9e-21  Score=191.45  Aligned_cols=139  Identities=17%  Similarity=0.163  Sum_probs=112.1

Q ss_pred             cCCceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc------------------ccch-----------------
Q 044550          141 DEGEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI------------------EPFF-----------------  185 (662)
Q Consensus       141 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi------------------~~F~-----------------  185 (662)
                      .++.++||+.++++|+++|....+   .+.++|+|+||||+                  ..|+                 
T Consensus        18 ~~~~~~gR~~~~~~i~~~L~~~~~---~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~vs~~~~~~~l~   94 (277)
T d2a5yb3          18 KQMTCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFD   94 (277)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHH
T ss_pred             CCCceeCcHHHHHHHHHHHHhccC---CCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEEecCCCCHHHHH
Confidence            356789999999999999986442   36789999999999                  1233                 


Q ss_pred             -----------------------------------------------------hhhh-cCCCCceEEEEcccHHHHhhhC
Q 044550          186 -----------------------------------------------------LRLK-NGLHGSKIFVTTRNESVARMMG  211 (662)
Q Consensus       186 -----------------------------------------------------~~l~-~~~~gSrIivTTR~~~v~~~~~  211 (662)
                                                                           ..+. ....|||||||||+++|+..+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~~~srilvTTR~~~v~~~~~  174 (277)
T d2a5yb3          95 LFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQELRLRCLVTTRDVEISNAAS  174 (277)
T ss_dssp             HHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHHTTCEEEEEESBGGGGGGCC
T ss_pred             HHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcccCceEEEEeehHHHHHhcC
Confidence                                                                 1111 1236899999999999999876


Q ss_pred             CC-CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCHHHHHHHHhh
Q 044550          212 ST-NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTVKEWQRILES  286 (662)
Q Consensus       212 ~~-~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~~~w~~~l~~  286 (662)
                      .. ++|++++|+.+|||+||++++|....   .+..++++++|+++|+|+||||+++|+.|+.+ +.++|.+..+.
T Consensus       175 ~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~---~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k-~~~~~~~~~~~  246 (277)
T d2a5yb3         175 QTCEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-TFEKMAQLNNK  246 (277)
T ss_dssp             SCEEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-SHHHHHHHHHH
T ss_pred             CCCceEECCCCCHHHHHHHHHHHhCCccC---chhhHHHHHHHHHHhCCCHHHHHHHHHHhccC-CHHHHHHHHHH
Confidence            64 78999999999999999999986443   35668999999999999999999999999887 68888776654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.63  E-value=2.2e-16  Score=158.85  Aligned_cols=241  Identities=21%  Similarity=0.270  Sum_probs=164.6

Q ss_pred             CceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---c-cccc-ccCcccCCCCccceeeecCCCCccc-ch
Q 044550          374 DNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---R-NWIR-EIPENVGKLIHLKYLNLSELRIERI-PE  447 (662)
Q Consensus       374 ~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~-~~~~-~lp~~i~~l~~Lr~L~L~~~~i~~l-p~  447 (662)
                      ..|..|.+..+.+... .         .+|..+.++++|+.+   + |.+. .+|..|++|.+|++|+|++|.+..+ |.
T Consensus        50 ~~v~~L~L~~~~l~g~-~---------~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~  119 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKP-Y---------PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD  119 (313)
T ss_dssp             CCEEEEEEECCCCSSC-E---------ECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG
T ss_pred             EEEEEEECCCCCCCCC-C---------CCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccc
Confidence            3577888877766521 0         112236667777776   3 4454 7899999999999999999998865 55


Q ss_pred             hhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCC-CccCceeecCccCCCCccCcccc
Q 044550          448 TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSL-RTLEKFVVGGGVDGGGTCRLESL  526 (662)
Q Consensus       448 ~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L-~~L~~~~~~~~~~~~~~~~l~~L  526 (662)
                      .+.++.+|+++++++|.....+|..+.++++|+++++++|.....+|..++.+.++ +.+.  ...+...+..+   ..+
T Consensus       120 ~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~--~~~n~l~~~~~---~~~  194 (313)
T d1ogqa_         120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMT--ISRNRLTGKIP---PTF  194 (313)
T ss_dssp             GGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEE--CCSSEEEEECC---GGG
T ss_pred             cccchhhhcccccccccccccCchhhccCcccceeeccccccccccccccccccccccccc--ccccccccccc---ccc
Confidence            68899999999999998778889999999999999999998777889888888776 4443  22222211112   222


Q ss_pred             ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCC
Q 044550          527 KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRG  606 (662)
Q Consensus       527 ~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~  606 (662)
                      ..+..+. +.+...       .........+....+|+.|.+..+..          ...+..+..+++|+.|++++|..
T Consensus       195 ~~l~~~~-l~l~~~-------~~~~~~~~~~~~~~~l~~l~~~~~~l----------~~~~~~~~~~~~L~~L~Ls~N~l  256 (313)
T d1ogqa_         195 ANLNLAF-VDLSRN-------MLEGDASVLFGSDKNTQKIHLAKNSL----------AFDLGKVGLSKNLNGLDLRNNRI  256 (313)
T ss_dssp             GGCCCSE-EECCSS-------EEEECCGGGCCTTSCCSEEECCSSEE----------CCBGGGCCCCTTCCEEECCSSCC
T ss_pred             ccccccc-cccccc-------cccccccccccccccccccccccccc----------cccccccccccccccccCccCee
Confidence            2332221 222211       11111223345667788887765432          01133566789999999999998


Q ss_pred             C-CCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecc
Q 044550          607 N-IFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLK  647 (662)
Q Consensus       607 ~-~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~  647 (662)
                      . .+|.+++.+++|++|+|++|.....+|.++.+. |+.+.+.
T Consensus       257 ~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~  299 (313)
T d1ogqa_         257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYA  299 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTC
T ss_pred             cccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhC
Confidence            7 799999999999999999998766777766666 5554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=2.5e-14  Score=139.75  Aligned_cols=186  Identities=18%  Similarity=0.108  Sum_probs=124.2

Q ss_pred             ccccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCC
Q 044550          417 NWIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPI  495 (662)
Q Consensus       417 ~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~  495 (662)
                      +.++.+|+++.  ++|++|+|++|.|+.+|. .+.++++|++|++++|. +..+|. ++.+++|++|++++|.. ...|.
T Consensus        20 ~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~-l~~l~~-~~~l~~L~~L~Ls~N~l-~~~~~   94 (266)
T d1p9ag_          20 RNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE-LTKLQV-DGTLPVLGTLDLSHNQL-QSLPL   94 (266)
T ss_dssp             SCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSC-CCEEEC-CSCCTTCCEEECCSSCC-SSCCC
T ss_pred             CCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccc-cccccc-ccccccccccccccccc-ccccc
Confidence            35677777664  578888888888888864 57888888888888886 777764 57788888888888864 56677


Q ss_pred             cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          496 GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      .+..+++|+.|++..  +.........+..   +.++..|.+.+.       .+.......+..+.+|+.|+++.+....
T Consensus        95 ~~~~l~~L~~L~l~~--~~~~~~~~~~~~~---l~~l~~L~l~~n-------~l~~l~~~~~~~l~~l~~l~l~~N~l~~  162 (266)
T d1p9ag_          95 LGQTLPALTVLDVSF--NRLTSLPLGALRG---LGELQELYLKGN-------ELKTLPPGLLTPTPKLEKLSLANNNLTE  162 (266)
T ss_dssp             CTTTCTTCCEEECCS--SCCCCCCSSTTTT---CTTCCEEECTTS-------CCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred             ccccccccccccccc--cccceeecccccc---cccccccccccc-------ccceeccccccccccchhcccccccccc
Confidence            788888888886432  2221112222333   333333333321       0111112234456777888777654210


Q ss_pred             CCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCC
Q 044550          576 GRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~  628 (662)
                               ...+.+..+++|++|+|++|.+..+|..+..+++|+.|+|++|+
T Consensus       163 ---------~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         163 ---------LPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             ---------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ---------cCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCC
Confidence                     01234566789999999999999999999999999999999886

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.51  E-value=3.3e-15  Score=150.06  Aligned_cols=216  Identities=19%  Similarity=0.146  Sum_probs=145.3

Q ss_pred             cccccccccc---ccCcccCCCCccceeeecC-CCCc-ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          411 FLRALRNWIR---EIPENVGKLIHLKYLNLSE-LRIE-RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       411 ~Lrvl~~~~~---~lp~~i~~l~~Lr~L~L~~-~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      .|...++.+.   .+|..+++|++|++|+|++ |.+. .+|++|++|++|++|++++|......|..+..+.+|++++++
T Consensus        54 ~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~  133 (313)
T d1ogqa_          54 NLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS  133 (313)
T ss_dssp             EEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECC
T ss_pred             EEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccc
Confidence            3443344443   5899999999999999997 6666 899999999999999999998555566778999999999999


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      .|.....+|..++.+++|+++++  ..+...+..+..+..+..+.  ..+.+..-       .+.......+..+ .+..
T Consensus       134 ~N~~~~~~p~~l~~l~~L~~l~l--~~n~l~~~ip~~~~~l~~l~--~~l~~~~n-------~l~~~~~~~~~~l-~~~~  201 (313)
T d1ogqa_         134 YNALSGTLPPSISSLPNLVGITF--DGNRISGAIPDSYGSFSKLF--TSMTISRN-------RLTGKIPPTFANL-NLAF  201 (313)
T ss_dssp             SSEEESCCCGGGGGCTTCCEEEC--CSSCCEEECCGGGGCCCTTC--CEEECCSS-------EEEEECCGGGGGC-CCSE
T ss_pred             cccccccCchhhccCcccceeec--cccccccccccccccccccc--cccccccc-------ccccccccccccc-cccc
Confidence            99888889999999999999863  33333222233333333321  11222210       0111111112222 2223


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC-CCCcc-cce
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP-LGKLP-LEK  643 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~-l~~Lp-L~~  643 (662)
                      +.+..+..         .......+...++|+.|++.++.....|.++..+++|++|+|++|+....+|. ++.+| |+.
T Consensus       202 l~l~~~~~---------~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~  272 (313)
T d1ogqa_         202 VDLSRNML---------EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHS  272 (313)
T ss_dssp             EECCSSEE---------EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCE
T ss_pred             cccccccc---------cccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCE
Confidence            43332211         11123445667899999999988776677888999999999999987766764 77777 777


Q ss_pred             eecc
Q 044550          644 LQLK  647 (662)
Q Consensus       644 l~l~  647 (662)
                      |++.
T Consensus       273 L~Ls  276 (313)
T d1ogqa_         273 LNVS  276 (313)
T ss_dssp             EECC
T ss_pred             EECc
Confidence            7654

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.44  E-value=3e-13  Score=128.64  Aligned_cols=189  Identities=22%  Similarity=0.212  Sum_probs=127.5

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCc
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRT  505 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~  505 (662)
                      +..|.+|++|++.+|.|+.++ .+.++++|++|++++|. +..++. +.++++|+++++++|.. +.++ .+..+++|+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~ls~n~-i~~~~~-l~~l~~l~~l~~~~n~~-~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          37 QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQ-ITDLAP-LKNLTKITELELSGNPL-KNVS-AIAGLQSIKT  111 (227)
T ss_dssp             HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCCSCCEEECCSCCC-SCCG-GGTTCTTCCE
T ss_pred             HHHcCCcCEEECCCCCCCcch-hHhcCCCCcEeecCCce-eecccc-ccccccccccccccccc-cccc-cccccccccc
Confidence            345677888888888888874 58888888888888887 555543 77888888888887754 4443 4667777777


Q ss_pred             cCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHH
Q 044550          506 LEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQ  585 (662)
Q Consensus       506 L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~  585 (662)
                      |.+.  .+.     ...+..+.....+..+.+...    .+..     ...+..+.+|+.|.++.+...           
T Consensus       112 l~l~--~~~-----~~~~~~~~~~~~~~~l~~~~~----~~~~-----~~~~~~~~~L~~L~l~~n~~~-----------  164 (227)
T d1h6ua2         112 LDLT--STQ-----ITDVTPLAGLSNLQVLYLDLN----QITN-----ISPLAGLTNLQYLSIGNAQVS-----------  164 (227)
T ss_dssp             EECT--TSC-----CCCCGGGTTCTTCCEEECCSS----CCCC-----CGGGGGCTTCCEEECCSSCCC-----------
T ss_pred             cccc--ccc-----ccccchhccccchhhhhchhh----hhch-----hhhhccccccccccccccccc-----------
Confidence            6422  111     112223333334444444332    1111     112456778888888766431           


Q ss_pred             HhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccc
Q 044550          586 LLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN  648 (662)
Q Consensus       586 ~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~  648 (662)
                      ....+..+++|+.|++++|....+| .+..+++|++|+|++|+ .+.+|+++.+| |+.|++.+
T Consensus       165 ~~~~l~~l~~L~~L~Ls~n~l~~l~-~l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         165 DLTPLANLSKLTTLKADDNKISDIS-PLASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             cchhhcccccceecccCCCccCCCh-hhcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            1223567789999999999888766 58899999999999995 66788899999 99888754

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.42  E-value=7.4e-13  Score=136.43  Aligned_cols=57  Identities=21%  Similarity=0.267  Sum_probs=41.2

Q ss_pred             CCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeeccc
Q 044550          590 LQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKN  648 (662)
Q Consensus       590 l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~  648 (662)
                      +..+++|++|++++|..+.+| ++..+++|++|+|++|. ...+++++.+| |+.|+|.+
T Consensus       325 l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~l~~l~~L~~L~L~~  382 (384)
T d2omza2         325 VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTPLANLTRITQLGLND  382 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCBCGGGTTCTTCSEEECCC
T ss_pred             cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCc-CCCChhhccCCCCCEeeCCC
Confidence            455678888888888777655 67788888888888875 34556677777 77776653

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.41  E-value=8e-13  Score=131.74  Aligned_cols=69  Identities=19%  Similarity=0.154  Sum_probs=46.4

Q ss_pred             cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCC
Q 044550          556 QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLP  634 (662)
Q Consensus       556 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp  634 (662)
                      .+..+..++.|.++.+....         .....+..+++|++|++++|.+..+|.++..+++|++|+|++|+ .+.++
T Consensus       190 ~~~~~~~l~~L~~s~n~l~~---------~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~  258 (305)
T d1xkua_         190 SLKGLNNLAKLGLSFNSISA---------VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIG  258 (305)
T ss_dssp             GGTTCTTCCEEECCSSCCCE---------ECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCC
T ss_pred             Hhhccccccccccccccccc---------cccccccccccceeeecccccccccccccccccCCCEEECCCCc-cCccC
Confidence            34555666777666543210         00123345678999999999888888888889999999999886 33443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.5e-13  Score=132.07  Aligned_cols=92  Identities=26%  Similarity=0.274  Sum_probs=42.7

Q ss_pred             cccccccCc-ccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccC-CccccccccccEEecCCCccccc
Q 044550          416 RNWIREIPE-NVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGL-PAGIRKLMNMRSLLNDGTYLLKY  492 (662)
Q Consensus       416 ~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~l-P~~i~~L~~L~~L~l~~~~~~~~  492 (662)
                      +|.++.+|. .|.++.+|++|+++++.+..++. .+.++..+..+++..+..+..+ |..+..+++|++|++++|.....
T Consensus        41 ~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~  120 (284)
T d1ozna_          41 GNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQEL  120 (284)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCC
T ss_pred             CCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccccc
Confidence            445555543 34455555555555555554432 3334455555554443334444 23345555555555555543222


Q ss_pred             cCCcCCCCCCCCccC
Q 044550          493 MPIGISRLTSLRTLE  507 (662)
Q Consensus       493 ~p~~i~~L~~L~~L~  507 (662)
                      .+..++.+++|+.++
T Consensus       121 ~~~~~~~~~~L~~l~  135 (284)
T d1ozna_         121 GPGLFRGLAALQYLY  135 (284)
T ss_dssp             CTTTTTTCTTCCEEE
T ss_pred             cccccchhcccchhh
Confidence            223344444555443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.35  E-value=1.5e-12  Score=120.91  Aligned_cols=162  Identities=26%  Similarity=0.337  Sum_probs=107.1

Q ss_pred             CCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550          427 GKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL  506 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L  506 (662)
                      ..+.++++|+++++.++.++ .+..+++|++|++++|. +..+|. ++++++|++|++++|.. ..+| .++.+++|+.|
T Consensus        37 ~~l~~l~~L~l~~~~i~~l~-~l~~l~nL~~L~Ls~N~-l~~~~~-l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L  111 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP-LKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGL  111 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEE
T ss_pred             HHhcCCCEEECCCCCCCCcc-ccccCCCcCcCcccccc-ccCccc-ccCCccccccccccccc-cccc-ccccccccccc
Confidence            34678889999999988874 58889999999999987 777765 88899999999988864 4444 36677777777


Q ss_pred             CceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHH
Q 044550          507 EKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQL  586 (662)
Q Consensus       507 ~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  586 (662)
                      ++.  .+..     ..+..+..++                               +|+.|+++.+..           ..
T Consensus       112 ~l~--~~~~-----~~~~~~~~l~-------------------------------~L~~L~l~~n~l-----------~~  142 (199)
T d2omxa2         112 TLF--NNQI-----TDIDPLKNLT-------------------------------NLNRLELSSNTI-----------SD  142 (199)
T ss_dssp             ECC--SSCC-----CCCGGGTTCT-------------------------------TCSEEECCSSCC-----------CC
T ss_pred             ccc--cccc-----ccccccchhh-------------------------------hhHHhhhhhhhh-----------cc
Confidence            532  1111     1112222333                               334444433221           01


Q ss_pred             hhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-ccee
Q 044550          587 LEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKL  644 (662)
Q Consensus       587 l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l  644 (662)
                      ++.+...++|+.|++.+|....+| .+..+++|++|+|++|+ .+.+|.++.++ |+.|
T Consensus       143 ~~~l~~~~~L~~L~l~~n~l~~l~-~l~~l~~L~~L~ls~N~-i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         143 ISALSGLTSLQQLNFSSNQVTDLK-PLANLTTLERLDISSNK-VSDISVLAKLTNLESL  199 (199)
T ss_dssp             CGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCCEEECCSSC-CCCCGGGGGCTTCSEE
T ss_pred             cccccccccccccccccccccCCc-cccCCCCCCEEECCCCC-CCCCccccCCCCCCcC
Confidence            223455678888888888777765 36788899999999886 44566666666 6543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=1.8e-12  Score=133.47  Aligned_cols=59  Identities=17%  Similarity=0.108  Sum_probs=47.0

Q ss_pred             hCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecccc
Q 044550          589 ALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNL  649 (662)
Q Consensus       589 ~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l  649 (662)
                      .+..+++++.|+++++....++ .+..+++|++|+|++|. .+.+|.++.+| |+.|++.+.
T Consensus       302 ~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-l~~l~~l~~l~~L~~L~l~~N  361 (384)
T d2omza2         302 PISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-VSDVSSLANLTNINWLSAGHN  361 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSS
T ss_pred             ccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-CCCChhHcCCCCCCEEECCCC
Confidence            3455688999999999888776 47889999999999996 44677788888 888887654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=4.1e-12  Score=118.87  Aligned_cols=164  Identities=22%  Similarity=0.254  Sum_probs=96.1

Q ss_pred             CCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          428 KLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       428 ~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      .|..|++|++++|.++.++ .+..+++|++|++++|. +..+|. ++.+++|++|++++|.. ..+| .+..+++|+.|+
T Consensus        44 ~L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~-i~~l~~-~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKP-LANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEE
T ss_pred             HhcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcc-ccCccc-cccCccccccccccccc-cccc-cccccccccccc
Confidence            3567777888888777765 47778888888888776 666664 67778888888877754 4554 466667777664


Q ss_pred             ceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHh
Q 044550          508 KFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLL  587 (662)
Q Consensus       508 ~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l  587 (662)
                      +..  +.     ...+..+..+..|+.+.+.+                               +...           ..
T Consensus       119 l~~--~~-----~~~~~~l~~l~~l~~l~~~~-------------------------------n~l~-----------~~  149 (210)
T d1h6ta2         119 LEH--NG-----ISDINGLVHLPQLESLYLGN-------------------------------NKIT-----------DI  149 (210)
T ss_dssp             CTT--SC-----CCCCGGGGGCTTCCEEECCS-------------------------------SCCC-----------CC
T ss_pred             ccc--cc-----cccccccccccccccccccc-------------------------------cccc-----------cc
Confidence            221  11     11122233333333332222                               1100           00


Q ss_pred             hhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCCCCCcc-cceeecc
Q 044550          588 EALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLK  647 (662)
Q Consensus       588 ~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~  647 (662)
                      .....+++|+.+++++|....+|. +..+++|++|+|++|. .+.+|.+..++ |+.|++.
T Consensus       150 ~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~-i~~l~~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         150 TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH-ISDLRALAGLKNLDVLELF  208 (210)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCBCGGGTTCTTCSEEEEE
T ss_pred             cccccccccccccccccccccccc-ccCCCCCCEEECCCCC-CCCChhhcCCCCCCEEEcc
Confidence            111234566777777776665543 5667777777777775 34566666777 7766664

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.32  E-value=7.7e-12  Score=124.42  Aligned_cols=216  Identities=19%  Similarity=0.166  Sum_probs=139.3

Q ss_pred             hcCcccccccccccccCc-ccCCCCccceeeecCCCCccc-chhhhcCCCccEEeccCCCCCccCCccccccccccEEec
Q 044550          407 SKLVFLRALRNWIREIPE-NVGKLIHLKYLNLSELRIERI-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLN  484 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~lp~-~i~~l~~Lr~L~L~~~~i~~l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l  484 (662)
                      .+++.|..-+|.++.+|+ .|.++++|++|++++|.+..+ |..+.++++|++|++++|+ ++.+|..+  ...|+.|.+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~-l~~l~~~~--~~~l~~L~~  107 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEKM--PKTLQELRV  107 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSSC--CTTCCEEEC
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCc-cCcCccch--hhhhhhhhc
Confidence            344445444678888876 578899999999999998887 4578899999999999987 88888754  357888888


Q ss_pred             CCCccccccCC-cCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccC
Q 044550          485 DGTYLLKYMPI-GISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNL  563 (662)
Q Consensus       485 ~~~~~~~~~p~-~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L  563 (662)
                      ..|.. ..++. .+.....+..+.........   .......+..+++|+.+.+.+..    +...      .....++|
T Consensus       108 ~~n~l-~~l~~~~~~~~~~~~~l~~~~n~~~~---~~~~~~~~~~l~~L~~l~l~~n~----l~~l------~~~~~~~L  173 (305)
T d1xkua_         108 HENEI-TKVRKSVFNGLNQMIVVELGTNPLKS---SGIENGAFQGMKKLSYIRIADTN----ITTI------PQGLPPSL  173 (305)
T ss_dssp             CSSCC-CBBCHHHHTTCTTCCEEECCSSCCCG---GGBCTTGGGGCTTCCEEECCSSC----CCSC------CSSCCTTC
T ss_pred             cccch-hhhhhhhhhccccccccccccccccc---cCCCccccccccccCccccccCC----cccc------CcccCCcc
Confidence            88765 33432 24444445544322111111   11222334455555555554431    1111      11124678


Q ss_pred             CcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCCCCCCC-CCCCcc-
Q 044550          564 LRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVNCEHLP-PLGKLP-  640 (662)
Q Consensus       564 ~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~~~~lp-~l~~Lp-  640 (662)
                      +.|+++.+...         ......+...++++.|.+++|....+ |.++..+++|++|+|++|+. +.+| .+..+| 
T Consensus       174 ~~L~l~~n~~~---------~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L-~~lp~~l~~l~~  243 (305)
T d1xkua_         174 TELHLDGNKIT---------KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKY  243 (305)
T ss_dssp             SEEECTTSCCC---------EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC-SSCCTTTTTCSS
T ss_pred             CEEECCCCcCC---------CCChhHhhccccccccccccccccccccccccccccceeeecccccc-cccccccccccC
Confidence            88887665421         01123456678899999998887665 56778899999999999964 4555 477888 


Q ss_pred             cceeecccc
Q 044550          641 LEKLQLKNL  649 (662)
Q Consensus       641 L~~l~l~~l  649 (662)
                      |+.|++.+.
T Consensus       244 L~~L~Ls~N  252 (305)
T d1xkua_         244 IQVVYLHNN  252 (305)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            888888764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.7e-12  Score=122.67  Aligned_cols=176  Identities=18%  Similarity=0.063  Sum_probs=120.5

Q ss_pred             cCcccccccccccccC-cccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCC
Q 044550          408 KLVFLRALRNWIREIP-ENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDG  486 (662)
Q Consensus       408 ~l~~Lrvl~~~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~  486 (662)
                      +++.|.+-+|.+..+| ..|.++++|++|+|++|.|+.+|. ++.+++|++|++++|+ +...|..+..+++|+.|++++
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~l~~  109 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSF  109 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSC-CSSCCCCTTTCTTCCEEECCS
T ss_pred             CCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-cccccccccccccccc-ccccccccccccccccccccc
Confidence            4455554467888886 457889999999999999998875 6789999999999987 778888889999999999999


Q ss_pred             CccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcE
Q 044550          487 TYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRL  566 (662)
Q Consensus       487 ~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L  566 (662)
                      |......+..+..+.+|++|.+  ..+......+..+..   +..|+.+.+.+.       .+.......+..+.+|+.|
T Consensus       110 ~~~~~~~~~~~~~l~~l~~L~l--~~n~l~~l~~~~~~~---l~~l~~l~l~~N-------~l~~~~~~~~~~l~~L~~L  177 (266)
T d1p9ag_         110 NRLTSLPLGALRGLGELQELYL--KGNELKTLPPGLLTP---TPKLEKLSLANN-------NLTELPAGLLNGLENLDTL  177 (266)
T ss_dssp             SCCCCCCSSTTTTCTTCCEEEC--TTSCCCCCCTTTTTT---CTTCCEEECTTS-------CCSCCCTTTTTTCTTCCEE
T ss_pred             cccceeeccccccccccccccc--cccccceeccccccc---cccchhcccccc-------cccccCcccccccccccee
Confidence            8765545566778888888853  233322222223333   334444444332       1112222335677899999


Q ss_pred             EEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCC
Q 044550          567 GLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGN  607 (662)
Q Consensus       567 ~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~  607 (662)
                      +++.+...          .+.+.+...++|+.|+|++|.+.
T Consensus       178 ~Ls~N~L~----------~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         178 LLQENSLY----------TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             ECCSSCCC----------CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ecccCCCc----------ccChhHCCCCCCCEEEecCCCCC
Confidence            99876531          12344556789999999998754

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=120.45  Aligned_cols=188  Identities=18%  Similarity=0.134  Sum_probs=104.2

Q ss_pred             cccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCcccccc-C
Q 044550          418 WIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTYLLKYM-P  494 (662)
Q Consensus       418 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~~~~~~-p  494 (662)
                      .++.+|..+.  ..+++|+|++|.|+.+|+ .+.++.+|++|+++++. +..++ ..+..+..++++....+..+..+ |
T Consensus        22 ~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~-l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~   98 (284)
T d1ozna_          22 GLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDP   98 (284)
T ss_dssp             CCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCT
T ss_pred             CCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhcccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence            4666666554  467788888888887775 57778888888888776 44443 34456677777776655444555 4


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDI  574 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~  574 (662)
                      ..+..+++|++|++.  .+.........+   ..+.+|+.+.+.+-    .+.   ......+....+|+.|+++.+...
T Consensus        99 ~~~~~l~~L~~L~l~--~n~~~~~~~~~~---~~~~~L~~l~l~~N----~l~---~i~~~~f~~~~~L~~L~l~~N~l~  166 (284)
T d1ozna_          99 ATFHGLGRLHTLHLD--RCGLQELGPGLF---RGLAALQYLYLQDN----ALQ---ALPDDTFRDLGNLTHLFLHGNRIS  166 (284)
T ss_dssp             TTTTTCTTCCEEECT--TSCCCCCCTTTT---TTCTTCCEEECCSS----CCC---CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             hhhcccccCCEEecC--Cccccccccccc---chhcccchhhhccc----ccc---ccChhHhccccchhhcccccCccc
Confidence            457777777777532  222211112222   22333333333321    011   111122445566777766655420


Q ss_pred             CCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCC-CcccccccCccEEEecCCCC
Q 044550          575 EGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIF-PKWLTSLTNLRELKLSLCVN  629 (662)
Q Consensus       575 ~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~l-P~~i~~l~~L~~L~L~~~~~  629 (662)
                               ......+..+++|+.+.+.+|....+ |.++..+++|++|++++|..
T Consensus       167 ---------~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i  213 (284)
T d1ozna_         167 ---------SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL  213 (284)
T ss_dssp             ---------EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ---------ccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccccc
Confidence                     00112344556677777776665433 56666677777777777663

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.25  E-value=1e-11  Score=116.10  Aligned_cols=165  Identities=19%  Similarity=0.194  Sum_probs=113.1

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|.+-++.++.++ ++..+++|++|++++|.++.+|+ ++++++|++|++++|+ +..+| .+..+++|+.|+++
T Consensus        45 L~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~-i~~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK-VKDLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCch-hHhhCCCCCEEeCCCccccCccc-cccCcccccccccccc-ccccc-cccccccccccccc
Confidence            444555555466777764 58889999999999999999874 7899999999999997 88887 48999999999999


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|.. ..+ ..+..+++|+.+...  .+..     ..+.....+++|+                               .
T Consensus       121 ~~~~-~~~-~~l~~l~~l~~l~~~--~n~l-----~~~~~~~~l~~L~-------------------------------~  160 (210)
T d1h6ta2         121 HNGI-SDI-NGLVHLPQLESLYLG--NNKI-----TDITVLSRLTKLD-------------------------------T  160 (210)
T ss_dssp             TSCC-CCC-GGGGGCTTCCEEECC--SSCC-----CCCGGGGGCTTCS-------------------------------E
T ss_pred             cccc-ccc-ccccccccccccccc--cccc-----ccccccccccccc-------------------------------c
Confidence            9865 333 356677777777422  1111     1122223333333                               3


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecC
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSL  626 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~  626 (662)
                      +.++.+..     .      .+..+..+++|++|++++|....+| .+..+++|++|+|++
T Consensus       161 l~l~~n~l-----~------~i~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         161 LSLEDNQI-----S------DIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCC-----C------CCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             cccccccc-----c------ccccccCCCCCCEEECCCCCCCCCh-hhcCCCCCCEEEccC
Confidence            33332211     0      0112455678888999888887776 578899999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=1.9e-11  Score=115.77  Aligned_cols=187  Identities=21%  Similarity=0.215  Sum_probs=131.2

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|..-++.++++ +++..|++|++|++++|.++.+++ +.++.+|+++++++|. ++.++ .+..+++|+.+.++
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~-~~~i~-~l~~l~~L~~l~l~  115 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNP-LKNVS-AIAGLQSIKTLDLT  115 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCC-CSCCG-GGTTCTTCCEEECT
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceeecccc-cccccccccccccccc-ccccc-cccccccccccccc
Confidence            44555555556788888 468999999999999999998864 8999999999999987 67775 48899999999999


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|... .+ ..+...+.+..+..   .+..    ......+....+|+.|.+.+..    ...     ...+.++++|+.
T Consensus       116 ~~~~~-~~-~~~~~~~~~~~l~~---~~~~----~~~~~~~~~~~~L~~L~l~~n~----~~~-----~~~l~~l~~L~~  177 (227)
T d1h6ua2         116 STQIT-DV-TPLAGLSNLQVLYL---DLNQ----ITNISPLAGLTNLQYLSIGNAQ----VSD-----LTPLANLSKLTT  177 (227)
T ss_dssp             TSCCC-CC-GGGTTCTTCCEEEC---CSSC----CCCCGGGGGCTTCCEEECCSSC----CCC-----CGGGTTCTTCCE
T ss_pred             ccccc-cc-chhccccchhhhhc---hhhh----hchhhhhccccccccccccccc----ccc-----chhhccccccee
Confidence            88642 22 23555666666642   2211    1122234445556555555431    111     123567889999


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEEEecC
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSL  626 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~  626 (662)
                      |+++.+.. .          .+..+..+++|++|++++|..+.+|. +.++++|++|+|++
T Consensus       178 L~Ls~n~l-~----------~l~~l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         178 LKADDNKI-S----------DISPLASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             EECCSSCC-C----------CCGGGGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             cccCCCcc-C----------CChhhcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            99987642 1          02235567899999999999888874 78999999999974

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.7e-11  Score=117.48  Aligned_cols=210  Identities=19%  Similarity=0.204  Sum_probs=112.9

Q ss_pred             cccccCcccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCcccccc-C
Q 044550          418 WIREIPENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYM-P  494 (662)
Q Consensus       418 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~-p  494 (662)
                      .++++|..+.  .++++|++++|.|+.+|. .+.++++|++|++++|.....+|. .+..+++++++.+..+..+... |
T Consensus        19 ~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~   96 (242)
T d1xwdc1          19 KVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP   96 (242)
T ss_dssp             SCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT
T ss_pred             CCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc
Confidence            4566776553  467888888888888776 467888888888888774444443 4667788888877654333333 3


Q ss_pred             CcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhcccccc-ccCCcEEEEecCC
Q 044550          495 IGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNK-KNLLRLGLQFGGD  573 (662)
Q Consensus       495 ~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~  573 (662)
                      ..+..+++|++|.+.  .+....  ......+..++.+..+...+.    .   ........+.++ ..++.|.+..+..
T Consensus        97 ~~~~~l~~L~~l~l~--~~~l~~--~~~~~~~~~l~~l~~~~~~n~----~---l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          97 EAFQNLPNLQYLLIS--NTGIKH--LPDVHKIHSLQKVLLDIQDNI----N---IHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             TSEECCTTCCEEEEE--SCCCCS--CCCCTTTCBSSCEEEEEESCT----T---CCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccccccccccccccc--hhhhcc--ccccccccccccccccccccc----c---cccccccccccccccceeeecccccc
Confidence            446777788877532  222210  111222222332222111110    0   011111112222 2444455443321


Q ss_pred             CCCCCCchhHHHHhhhCCCCCCCcEEE-EeecCCCCCCccc-ccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccc
Q 044550          574 IEGRRKNEKDKQLLEALQPPLNVEELE-IESYRGNIFPKWL-TSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKN  648 (662)
Q Consensus       574 ~~~~~~~~~~~~~l~~l~~~~~L~~L~-l~~~~~~~lP~~i-~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~  648 (662)
                      .          .+.......+++.++. +.++....+|.+. ..+++|++|+|++|+. +.+|.  +..++ |+.+.+.+
T Consensus       166 ~----------~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l-~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         166 Q----------EIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI-HSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             C----------EECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCC-CCCCSSSCTTCCEEESSSEES
T ss_pred             c----------ccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcC-CccCHHHHcCCcccccCcCCC
Confidence            0          0111122234555554 4556677788764 5789999999998874 35554  55666 66666555


Q ss_pred             ccC
Q 044550          649 LKS  651 (662)
Q Consensus       649 l~~  651 (662)
                      ++.
T Consensus       235 l~~  237 (242)
T d1xwdc1         235 LKK  237 (242)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=4.8e-11  Score=110.36  Aligned_cols=161  Identities=24%  Similarity=0.282  Sum_probs=109.9

Q ss_pred             hhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          406 FSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       406 ~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      +.+++.|...++.+.++ +++..+++|++|++++|.++.+++ ++++++|++|++++|. +..+|. +..+++|+.|+++
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-IADITP-LANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCccccccccCccc-ccCCcccccccccccc-cccccc-ccccccccccccc
Confidence            34444455446677776 468889999999999999998875 9999999999999987 677764 8899999999999


Q ss_pred             CCccccccCCcCCCCCCCCccCceeecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCc
Q 044550          486 GTYLLKYMPIGISRLTSLRTLEKFVVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLR  565 (662)
Q Consensus       486 ~~~~~~~~p~~i~~L~~L~~L~~~~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~  565 (662)
                      +|... .. ..+..+++|+.|++.  ++..     ..+..+..+                               .+|+.
T Consensus       115 ~~~~~-~~-~~~~~l~~L~~L~l~--~n~l-----~~~~~l~~~-------------------------------~~L~~  154 (199)
T d2omxa2         115 NNQIT-DI-DPLKNLTNLNRLELS--SNTI-----SDISALSGL-------------------------------TSLQQ  154 (199)
T ss_dssp             SSCCC-CC-GGGTTCTTCSEEECC--SSCC-----CCCGGGTTC-------------------------------TTCSE
T ss_pred             ccccc-cc-cccchhhhhHHhhhh--hhhh-----ccccccccc-------------------------------ccccc
Confidence            88653 22 357778888888532  2211     112222223                               33444


Q ss_pred             EEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCcccccccCccEE
Q 044550          566 LGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPKWLTSLTNLREL  622 (662)
Q Consensus       566 L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L  622 (662)
                      |.+..+...           .+..+..+++|++|++++|....+| .+..+++|++|
T Consensus       155 L~l~~n~l~-----------~l~~l~~l~~L~~L~ls~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         155 LNFSSNQVT-----------DLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCC-----------CCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEE
T ss_pred             ccccccccc-----------CCccccCCCCCCEEECCCCCCCCCc-cccCCCCCCcC
Confidence            444333210           0123456788999999999877765 57788888876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.14  E-value=2e-10  Score=116.15  Aligned_cols=81  Identities=22%  Similarity=0.280  Sum_probs=48.2

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      ...++.|.+.++.+..+|..             +.+++.|++.++.++.++.-   ...|++|++++|.+..+|. ++++
T Consensus        57 ~~~L~~L~Ls~N~l~~lp~~-------------~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~n~l~~lp~-~~~l  119 (353)
T d1jl5a_          57 PPHLESLVASCNSLTELPEL-------------PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLPE-LQNS  119 (353)
T ss_dssp             CTTCSEEECCSSCCSSCCCC-------------CTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCCC-CTTC
T ss_pred             CCCCCEEECCCCCCcccccc-------------hhhhhhhhhhhcccchhhhh---ccccccccccccccccccc-hhhh
Confidence            34556666666555555432             34555566555555554421   1357777777777777764 5677


Q ss_pred             CCccEEeccCCCCCccCCc
Q 044550          453 YNLQKLDIRGCQYLRGLPA  471 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP~  471 (662)
                      .+|++|++++|. +...|.
T Consensus       120 ~~L~~L~l~~~~-~~~~~~  137 (353)
T d1jl5a_         120 SFLKIIDVDNNS-LKKLPD  137 (353)
T ss_dssp             TTCCEEECCSSC-CSCCCC
T ss_pred             ccceeecccccc-cccccc
Confidence            777777777766 444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7.9e-11  Score=115.44  Aligned_cols=188  Identities=15%  Similarity=0.106  Sum_probs=112.3

Q ss_pred             ccCCCCccceeeecCCCCc--ccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccc--cCCcCCCC
Q 044550          425 NVGKLIHLKYLNLSELRIE--RIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKY--MPIGISRL  500 (662)
Q Consensus       425 ~i~~l~~Lr~L~L~~~~i~--~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~--~p~~i~~L  500 (662)
                      .......|++|++++|.+.  .++.-+.++++|++|++++|..-...+..+.++++|++|++++|..+..  +..-...+
T Consensus        41 ~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          41 EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHH
Confidence            3445678999999998765  3556678899999999999874445566788889999999998854331  11223456


Q ss_pred             CCCCccCceeecCccCCCCccCc-ccccc-CcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCC
Q 044550          501 TSLRTLEKFVVGGGVDGGGTCRL-ESLKN-LQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRR  578 (662)
Q Consensus       501 ~~L~~L~~~~~~~~~~~~~~~~l-~~L~~-L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~  578 (662)
                      ++|++|++..+.+-.    ...+ ..+.. .+.|+.|.+.++..  ++..  .........+++|+.|+++.+..+.   
T Consensus       121 ~~L~~L~ls~c~~~~----~~~~~~~~~~~~~~L~~L~l~~~~~--~i~~--~~l~~l~~~~~~L~~L~L~~~~~it---  189 (284)
T d2astb2         121 SRLDELNLSWCFDFT----EKHVQVAVAHVSETITQLNLSGYRK--NLQK--SDLSTLVRRCPNLVHLDLSDSVMLK---  189 (284)
T ss_dssp             TTCCEEECCCCTTCC----HHHHHHHHHHSCTTCCEEECCSCGG--GSCH--HHHHHHHHHCTTCSEEECTTCTTCC---
T ss_pred             Hhccccccccccccc----cccchhhhcccccccchhhhccccc--cccc--ccccccccccccccccccccccCCC---
Confidence            778887643322111    1111 11111 23455555555410  1111  1122223457888888887654311   


Q ss_pred             CchhHHHHhhhCCCCCCCcEEEEeecCCCC--CCcccccccCccEEEecCCC
Q 044550          579 KNEKDKQLLEALQPPLNVEELEIESYRGNI--FPKWLTSLTNLRELKLSLCV  628 (662)
Q Consensus       579 ~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~--lP~~i~~l~~L~~L~L~~~~  628 (662)
                           ...+..+..+++|++|++++|....  -+..+..+++|+.|++++|.
T Consensus       190 -----d~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~  236 (284)
T d2astb2         190 -----NDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIV  236 (284)
T ss_dssp             -----GGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSS
T ss_pred             -----chhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCC
Confidence                 2234455667888888888865322  12245577888888888883

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.02  E-value=1.8e-10  Score=97.13  Aligned_cols=88  Identities=19%  Similarity=0.249  Sum_probs=58.1

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP-  494 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-  494 (662)
                      +|.++.++ .+..+.+|++|++++|.++.+|+.++.+++|++|++++|. +..+|. +..+++|++|++++|.. ..+| 
T Consensus         7 ~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~-i~~l~~-~~~l~~L~~L~l~~N~i-~~~~~   82 (124)
T d1dcea3           7 HKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNA-LENVDG-VANLPRLQELLLCNNRL-QQSAA   82 (124)
T ss_dssp             TSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCSSCCEEECCSSCC-CSSST
T ss_pred             CCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccc-ccccCc-cccccccCeEECCCCcc-CCCCC
Confidence            45666664 3667777777777777777777777777777777777776 666653 77777777777777754 3333 


Q ss_pred             -CcCCCCCCCCccC
Q 044550          495 -IGISRLTSLRTLE  507 (662)
Q Consensus       495 -~~i~~L~~L~~L~  507 (662)
                       ..++.+++|++|+
T Consensus        83 ~~~l~~~~~L~~L~   96 (124)
T d1dcea3          83 IQPLVSCPRLVLLN   96 (124)
T ss_dssp             TGGGGGCTTCCEEE
T ss_pred             chhhcCCCCCCEEE
Confidence             2345555666554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=2.2e-10  Score=96.67  Aligned_cols=71  Identities=24%  Similarity=0.376  Sum_probs=37.9

Q ss_pred             ceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCccC
Q 044550          433 KYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       433 r~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L~  507 (662)
                      |+|+|++|.++.+|. ++++.+|++|++++|. ++.+|..++.+++|+.|++++|.. ..+| +++.+++|++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i-~~l~-~~~~l~~L~~L~   71 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNAL-ENVD-GVANLPRLQELL   71 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCC-CCCG-GGTTCSSCCEEE
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccc-cccC-ccccccccCeEE
Confidence            455555555555542 5555555555555554 555555555555555555555543 3333 355555555554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=2e-10  Score=101.99  Aligned_cols=79  Identities=20%  Similarity=0.262  Sum_probs=57.1

Q ss_pred             cCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCc-CCCCCCCC
Q 044550          426 VGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIG-ISRLTSLR  504 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~-i~~L~~L~  504 (662)
                      +.++..||+|+|++|.|+.+|..+..+.+|++|++++|. +..++ ++..+++|++|++++|.. ..+|.+ +..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~-i~~l~-~~~~l~~L~~L~ls~N~i-~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-IRKLD-GFPLLRRLKTLLVNNNRI-CRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSC-CCEEC-CCCCCSSCCEEECCSSCC-CEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCC-CCccC-CcccCcchhhhhcccccc-cCCCccccccccccc
Confidence            446667888888888888877666777888888888876 66674 477788888888888765 555554 34577777


Q ss_pred             ccC
Q 044550          505 TLE  507 (662)
Q Consensus       505 ~L~  507 (662)
                      +|+
T Consensus        91 ~L~   93 (162)
T d1a9na_          91 ELI   93 (162)
T ss_dssp             EEE
T ss_pred             cce
Confidence            775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.89  E-value=1.4e-08  Score=102.07  Aligned_cols=96  Identities=15%  Similarity=0.240  Sum_probs=56.4

Q ss_pred             CCceeEEEEecCCCCCcccccccccccccchHhhhcCcccccccccccccCcccCCCCccceeeecCCCCcccchhhhcC
Q 044550          373 GDNVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRALRNWIREIPENVGKLIHLKYLNLSELRIERIPETLCEL  452 (662)
Q Consensus       373 ~~~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L  452 (662)
                      ..+++.|.+..+.+..++. +            ...++.|.+-+|.+..+|. ++.+.+|++|+++++.+...|..+   
T Consensus        77 ~~~L~~L~l~~n~l~~l~~-l------------p~~L~~L~L~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~---  139 (353)
T d1jl5a_          77 PQSLKSLLVDNNNLKALSD-L------------PPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLP---  139 (353)
T ss_dssp             CTTCCEEECCSSCCSCCCS-C------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCC---
T ss_pred             hhhhhhhhhhhcccchhhh-h------------ccccccccccccccccccc-hhhhccceeecccccccccccccc---
Confidence            4678888887777665521 1            2344555555678888875 678899999999988877665543   


Q ss_pred             CCccEEeccCCCCCccCCccccccccccEEecCCC
Q 044550          453 YNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT  487 (662)
Q Consensus       453 ~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~  487 (662)
                      ..+..+.+.++. .. -+..+..++.++.|.+..|
T Consensus       140 ~~l~~l~~~~~~-~~-~~~~l~~l~~l~~L~l~~n  172 (353)
T d1jl5a_         140 PSLEFIAAGNNQ-LE-ELPELQNLPFLTAIYADNN  172 (353)
T ss_dssp             TTCCEEECCSSC-CS-SCCCCTTCTTCCEEECCSS
T ss_pred             ccccchhhcccc-cc-ccccccccccceecccccc
Confidence            233344444333 11 1223444555555555443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.8e-09  Score=95.62  Aligned_cols=89  Identities=26%  Similarity=0.216  Sum_probs=48.1

Q ss_pred             cccccccCcccCCCCccceeeecCCCCcccchhh-hcCCCccEEeccCCCCCccCCc--cccccccccEEecCCCccccc
Q 044550          416 RNWIREIPENVGKLIHLKYLNLSELRIERIPETL-CELYNLQKLDIRGCQYLRGLPA--GIRKLMNMRSLLNDGTYLLKY  492 (662)
Q Consensus       416 ~~~~~~lp~~i~~l~~Lr~L~L~~~~i~~lp~~i-~~L~~L~~L~l~~~~~l~~lP~--~i~~L~~L~~L~l~~~~~~~~  492 (662)
                      +|.+.+++ ++..+++|++|++++|.++.+|+.+ ..+++|++|++++|. +..++.  .+..+++|++|++++|.. ..
T Consensus        50 ~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~l~~l~~l~~L~~L~l~~N~i-~~  126 (162)
T d1a9na_          50 DNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNPV-TN  126 (162)
T ss_dssp             SSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSGG-GG
T ss_pred             CCCCCccC-CcccCcchhhhhcccccccCCCccccccccccccceecccc-ccccccccccccccccchhhcCCCcc-cc
Confidence            45555552 3555666666666666666665433 456666666666665 444442  345556666666666643 33


Q ss_pred             cCC----cCCCCCCCCccC
Q 044550          493 MPI----GISRLTSLRTLE  507 (662)
Q Consensus       493 ~p~----~i~~L~~L~~L~  507 (662)
                      .|.    .+..+++|+.|+
T Consensus       127 ~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_         127 KKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             STTHHHHHHHHCTTCSEET
T ss_pred             ccchHHHHHHHCCCcCeeC
Confidence            332    234455555554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=5.2e-09  Score=99.54  Aligned_cols=197  Identities=16%  Similarity=0.121  Sum_probs=125.6

Q ss_pred             cceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC-cCCCCCCCCccCce
Q 044550          432 LKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI-GISRLTSLRTLEKF  509 (662)
Q Consensus       432 Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~-~i~~L~~L~~L~~~  509 (662)
                      .+.++.++..++.+|+.+.  .++++|++++|. +..+|. .+.++++|++|++++|.....+|. .+..++++++|...
T Consensus        10 ~~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~   86 (242)
T d1xwdc1          10 NRVFLCQESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   86 (242)
T ss_dssp             SSEEEEESCSCSSCCSCSC--SCCSEEEEESCC-CCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEE
T ss_pred             CCEEEEeCCCCCCcCCCCC--CCCCEEECcCCc-CCccChhHhhccchhhhhhhccccccceeecccccccccccccccc
Confidence            4678888888999998764  589999999998 888887 578999999999999977665554 46788888888633


Q ss_pred             eecCccCCCCccCccccccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhh
Q 044550          510 VVGGGVDGGGTCRLESLKNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEA  589 (662)
Q Consensus       510 ~~~~~~~~~~~~~l~~L~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~  589 (662)
                      ... ...   ......+..+.+|+.+.+.+.. +....        .......++.+...........  ..    ....
T Consensus        87 ~~n-~l~---~~~~~~~~~l~~L~~l~l~~~~-l~~~~--------~~~~~~~l~~l~~~~~~n~~l~--~i----~~~~  147 (242)
T d1xwdc1          87 KAN-NLL---YINPEAFQNLPNLQYLLISNTG-IKHLP--------DVHKIHSLQKVLLDIQDNINIH--TI----ERNS  147 (242)
T ss_dssp             CCT-TCC---EECTTSEECCTTCCEEEEESCC-CCSCC--------CCTTTCBSSCEEEEEESCTTCC--EE----CTTS
T ss_pred             ccc-ccc---ccccccccccccccccccchhh-hcccc--------cccccccccccccccccccccc--cc----cccc
Confidence            222 221   2222334555566666555431 01111        1223344555544332210000  00    0011


Q ss_pred             CC-CCCCCcEEEEeecCCCCCCcccccccCccEEEecCCCCCCCCCC--CCCcc-cceeeccccc
Q 044550          590 LQ-PPLNVEELEIESYRGNIFPKWLTSLTNLRELKLSLCVNCEHLPP--LGKLP-LEKLQLKNLK  650 (662)
Q Consensus       590 l~-~~~~L~~L~l~~~~~~~lP~~i~~l~~L~~L~L~~~~~~~~lp~--l~~Lp-L~~l~l~~l~  650 (662)
                      +. ....++.|.+.++....++......+++..+....+...+.+|.  +..+| |+.|++.+.+
T Consensus       148 ~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~  212 (242)
T d1xwdc1         148 FVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  212 (242)
T ss_dssp             STTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSC
T ss_pred             cccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCc
Confidence            12 23578899999988888887777778888887666666667765  67888 8888887644

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=6.7e-10  Score=108.66  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=102.5

Q ss_pred             CcccCCCCccceeeecCCCCc-ccchhhhcCCCccEEeccCCCCCcc--CCccccccccccEEecCCCccccc--cCCcC
Q 044550          423 PENVGKLIHLKYLNLSELRIE-RIPETLCELYNLQKLDIRGCQYLRG--LPAGIRKLMNMRSLLNDGTYLLKY--MPIGI  497 (662)
Q Consensus       423 p~~i~~l~~Lr~L~L~~~~i~-~lp~~i~~L~~L~~L~l~~~~~l~~--lP~~i~~L~~L~~L~l~~~~~~~~--~p~~i  497 (662)
                      +.-+..+++|++|++++|.+. ..+..++++++|++|++++|..++.  +..-...+++|++|++++|..+..  ++..+
T Consensus        64 ~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~  143 (284)
T d2astb2          64 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV  143 (284)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH
T ss_pred             HHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhh
Confidence            334567888999999998876 4567788888999999998875642  222245678899999988854321  12222


Q ss_pred             CC-CCCCCccCceeecCccCCCCccCcccc-ccCcccCccccccCCCCCCCCChhhhhhccccccccCCcEEEEecCCCC
Q 044550          498 SR-LTSLRTLEKFVVGGGVDGGGTCRLESL-KNLQLLRKCSIEGLKGLSNVSHVDEVERLQLYNKKNLLRLGLQFGGDIE  575 (662)
Q Consensus       498 ~~-L~~L~~L~~~~~~~~~~~~~~~~l~~L-~~L~~L~~L~i~~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~  575 (662)
                      .. .++|+.|++........   ...+..+ .++++|+.|++.++   ..+.   +.....+.++++|++|++++|..++
T Consensus       144 ~~~~~~L~~L~l~~~~~~i~---~~~l~~l~~~~~~L~~L~L~~~---~~it---d~~~~~l~~~~~L~~L~L~~C~~i~  214 (284)
T d2astb2         144 AHVSETITQLNLSGYRKNLQ---KSDLSTLVRRCPNLVHLDLSDS---VMLK---NDCFQEFFQLNYLQHLSLSRCYDII  214 (284)
T ss_dssp             HHSCTTCCEEECCSCGGGSC---HHHHHHHHHHCTTCSEEECTTC---TTCC---GGGGGGGGGCTTCCEEECTTCTTCC
T ss_pred             cccccccchhhhcccccccc---cccccccccccccccccccccc---cCCC---chhhhhhcccCcCCEEECCCCCCCC
Confidence            22 24677775432211110   1122222 34566777777766   2222   2333456678899999998875422


Q ss_pred             CCCCchhHHHHhhhCCCCCCCcEEEEeec
Q 044550          576 GRRKNEKDKQLLEALQPPLNVEELEIESY  604 (662)
Q Consensus       576 ~~~~~~~~~~~l~~l~~~~~L~~L~l~~~  604 (662)
                              ...+..+..+++|+.|++.++
T Consensus       215 --------~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         215 --------PETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             --------GGGGGGGGGCTTCCEEECTTS
T ss_pred             --------hHHHHHHhcCCCCCEEeeeCC
Confidence                    123445566789999999887

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.67  E-value=2.2e-08  Score=91.39  Aligned_cols=87  Identities=22%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             cccccCcccCCCCccceeeecCCCCcc-c-chhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccC-
Q 044550          418 WIREIPENVGKLIHLKYLNLSELRIER-I-PETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMP-  494 (662)
Q Consensus       418 ~~~~lp~~i~~l~~Lr~L~L~~~~i~~-l-p~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p-  494 (662)
                      .++.+|.++.  .++++|+|++|.|+. + +..+.++.+|+.|++++|......+..+..+++|++|++++|.. ..+| 
T Consensus        19 ~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l-~~l~~   95 (192)
T d1w8aa_          19 GLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI-KEISN   95 (192)
T ss_dssp             CCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC-CEECS
T ss_pred             CcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccc-cccCH
Confidence            4555565543  456666666666653 3 23456666666666666663333344555666666666666654 3333 


Q ss_pred             CcCCCCCCCCccC
Q 044550          495 IGISRLTSLRTLE  507 (662)
Q Consensus       495 ~~i~~L~~L~~L~  507 (662)
                      ..|.++++|++|+
T Consensus        96 ~~F~~l~~L~~L~  108 (192)
T d1w8aa_          96 KMFLGLHQLKTLN  108 (192)
T ss_dssp             SSSTTCTTCCEEE
T ss_pred             HHHhCCCcccccc
Confidence            3456666666664

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.63  E-value=1.4e-10  Score=106.84  Aligned_cols=63  Identities=21%  Similarity=0.169  Sum_probs=28.8

Q ss_pred             CcccCCCCccceeeecCCCCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCC
Q 044550          423 PENVGKLIHLKYLNLSELRIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGT  487 (662)
Q Consensus       423 p~~i~~l~~Lr~L~L~~~~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~  487 (662)
                      |.++..|.+|++|+|++|.|+.++ .+.++++|++|++++|. +..+|.....+++|++|++++|
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN  103 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEE
T ss_pred             hhHHhcccccceeECcccCCCCcc-cccCCccccChhhcccc-cccccccccccccccccccccc
Confidence            333444444445555444444443 24444445555554444 4444433333344444444444

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.60  E-value=5.4e-10  Score=102.78  Aligned_cols=73  Identities=18%  Similarity=0.227  Sum_probs=54.0

Q ss_pred             ccceeeecCC--CCcccchhhhcCCCccEEeccCCCCCccCCccccccccccEEecCCCccccccCCcCCCCCCCCcc
Q 044550          431 HLKYLNLSEL--RIERIPETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLNDGTYLLKYMPIGISRLTSLRTL  506 (662)
Q Consensus       431 ~Lr~L~L~~~--~i~~lp~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~~~~~~~~~p~~i~~L~~L~~L  506 (662)
                      .++.+++.+.  .++.+|.+++.|.+|++|++++|. +..++ .+..+++|++|++++|.. ..+|..+..+++|++|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~-I~~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEE-ESCCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhhHHhcccccceeECcccC-CCCcc-cccCCccccChhhccccc-cccccccccccccccc
Confidence            3445566554  477889999999999999999988 88886 589999999999999864 4555433333445544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=6.9e-08  Score=87.95  Aligned_cols=99  Identities=17%  Similarity=0.166  Sum_probs=73.8

Q ss_pred             hcCcccccccccccc-c-CcccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCc-cccccccccEE
Q 044550          407 SKLVFLRALRNWIRE-I-PENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSL  482 (662)
Q Consensus       407 ~~l~~Lrvl~~~~~~-l-p~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L  482 (662)
                      ..++.|.+-+|.+.. + +..+..+++|++|+|++|.+..+| ..+..+.+|++|++++|+ +..+|. .+.++++|++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~-l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENK-IKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCC-CCEECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccc-ccccCHHHHhCCCccccc
Confidence            344555555677754 3 345677899999999999888664 477788999999999887 666655 57889999999


Q ss_pred             ecCCCccccccC-CcCCCCCCCCccC
Q 044550          483 LNDGTYLLKYMP-IGISRLTSLRTLE  507 (662)
Q Consensus       483 ~l~~~~~~~~~p-~~i~~L~~L~~L~  507 (662)
                      ++++|.. ..+| ..+..+++|++|+
T Consensus       108 ~L~~N~l-~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_         108 NLYDNQI-SCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             ECCSSCC-CEECTTSSTTCTTCCEEE
T ss_pred             ccCCccc-cccCHHHhcCCccccccc
Confidence            9999876 4444 4577888888885

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=3.8e-07  Score=79.64  Aligned_cols=94  Identities=18%  Similarity=0.110  Sum_probs=65.6

Q ss_pred             cccccccccccCcccCCCCccceeeecCC-CCcccch-hhhcCCCccEEeccCCCCCccCC-ccccccccccEEecCCCc
Q 044550          412 LRALRNWIREIPENVGKLIHLKYLNLSEL-RIERIPE-TLCELYNLQKLDIRGCQYLRGLP-AGIRKLMNMRSLLNDGTY  488 (662)
Q Consensus       412 Lrvl~~~~~~lp~~i~~l~~Lr~L~L~~~-~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP-~~i~~L~~L~~L~l~~~~  488 (662)
                      ++..++.+.+.|..+..+++|++|+++++ .++.+|. .+.++.+|+.|++++|+ +..+| ..+..+++|++|++++|.
T Consensus        13 l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccc-cCCcccccccccccccceeccCCC
Confidence            33334455666777777888888888765 4777754 57788888888888877 66664 457788888888888886


Q ss_pred             cccccCCcCCCCCCCCccC
Q 044550          489 LLKYMPIGISRLTSLRTLE  507 (662)
Q Consensus       489 ~~~~~p~~i~~L~~L~~L~  507 (662)
                      . ..+|.++....+|+.|+
T Consensus        92 l-~~l~~~~~~~~~l~~L~  109 (156)
T d2ifga3          92 L-ESLSWKTVQGLSLQELV  109 (156)
T ss_dssp             C-SCCCSTTTCSCCCCEEE
T ss_pred             C-cccChhhhccccccccc
Confidence            5 56776655555666664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=76.49  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=66.1

Q ss_pred             Ccccccccc-cccccC-cccCCCCccceeeecCCCCcccc-hhhhcCCCccEEeccCCCCCccCCccccccccccEEecC
Q 044550          409 LVFLRALRN-WIREIP-ENVGKLIHLKYLNLSELRIERIP-ETLCELYNLQKLDIRGCQYLRGLPAGIRKLMNMRSLLND  485 (662)
Q Consensus       409 l~~Lrvl~~-~~~~lp-~~i~~l~~Lr~L~L~~~~i~~lp-~~i~~L~~L~~L~l~~~~~l~~lP~~i~~L~~L~~L~l~  485 (662)
                      ++.|.+.++ .++.++ ..|.++++|++|+|++|.|+.++ ..+..+++|++|+|++|+ ++.+|.++....+|++|+++
T Consensus        33 l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~~~l~~L~L~  111 (156)
T d2ifga3          33 LTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA-LESLSWKTVQGLSLQELVLS  111 (156)
T ss_dssp             CSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC-CSCCCSTTTCSCCCCEEECC
T ss_pred             cCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCC-CcccChhhhccccccccccC
Confidence            333333344 588885 45888999999999999999995 468999999999999998 88999988777789999999


Q ss_pred             CCcc
Q 044550          486 GTYL  489 (662)
Q Consensus       486 ~~~~  489 (662)
                      +|..
T Consensus       112 ~Np~  115 (156)
T d2ifga3         112 GNPL  115 (156)
T ss_dssp             SSCC
T ss_pred             CCcc
Confidence            9854

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.96  E-value=4.9e-07  Score=90.42  Aligned_cols=242  Identities=16%  Similarity=0.113  Sum_probs=134.6

Q ss_pred             hhcCcccccc---cccc-----cccCcccCCCCccceeeecCCCCcc-----------cchhhhcCCCccEEeccCCCCC
Q 044550          406 FSKLVFLRAL---RNWI-----REIPENVGKLIHLKYLNLSELRIER-----------IPETLCELYNLQKLDIRGCQYL  466 (662)
Q Consensus       406 ~~~l~~Lrvl---~~~~-----~~lp~~i~~l~~Lr~L~L~~~~i~~-----------lp~~i~~L~~L~~L~l~~~~~l  466 (662)
                      +.+...|+.+   +|.+     ..+-..+...++|+.|+++++....           +.+.+...++|+.|++++|. +
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~-i  105 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F  105 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc-c
Confidence            4444555554   3433     3344567778999999998875432           23345678899999999987 4


Q ss_pred             cc-----CCccccccccccEEecCCCccccc--------cC-----CcCCCCCCCCccCceeecCccCCCCccCc-cccc
Q 044550          467 RG-----LPAGIRKLMNMRSLLNDGTYLLKY--------MP-----IGISRLTSLRTLEKFVVGGGVDGGGTCRL-ESLK  527 (662)
Q Consensus       467 ~~-----lP~~i~~L~~L~~L~l~~~~~~~~--------~p-----~~i~~L~~L~~L~~~~~~~~~~~~~~~~l-~~L~  527 (662)
                      ..     +...+...++|++|++++|.....        +.     ......+.|+.|...  .+.........+ ..+.
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~--~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG--RNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC--SSCCTGGGHHHHHHHHH
T ss_pred             ccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc--cccccccccccccchhh
Confidence            32     344556778999999998854110        00     001234456655421  221110001111 1233


Q ss_pred             cCcccCccccccCCCCCCCCC--hhhhhhccccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecC
Q 044550          528 NLQLLRKCSIEGLKGLSNVSH--VDEVERLQLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYR  605 (662)
Q Consensus       528 ~L~~L~~L~i~~~~~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~  605 (662)
                      ....|+.+.+...    .+..  ........+..+++|+.|+++++..     ...........+...++|++|++++|.
T Consensus       184 ~~~~L~~L~L~~n----~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i-----~~~g~~~L~~~l~~~~~L~~L~Ls~n~  254 (344)
T d2ca6a1         184 SHRLLHTVKMVQN----GIRPEGIEHLLLEGLAYCQELKVLDLQDNTF-----THLGSSALAIALKSWPNLRELGLNDCL  254 (344)
T ss_dssp             HCTTCCEEECCSS----CCCHHHHHHHHHTTGGGCTTCCEEECCSSCC-----HHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred             hhhhhcccccccc----cccccccccchhhhhcchhhhcccccccccc-----cccccccccccccccccchhhhhhcCc
Confidence            4455555555543    1111  1222334567788999999987642     112233445667788999999999987


Q ss_pred             CCCC-----Ccccc--cccCccEEEecCCCCCCCCCCCCCcc-cceeecccccCccEeCCcccC
Q 044550          606 GNIF-----PKWLT--SLTNLRELKLSLCVNCEHLPPLGKLP-LEKLQLKNLKSVKRVGNEFLG  661 (662)
Q Consensus       606 ~~~l-----P~~i~--~l~~L~~L~L~~~~~~~~lp~l~~Lp-L~~l~l~~l~~L~~~~n~~~g  661 (662)
                      ...-     -..+.  ..++|++|+|++|.....  .+..+. .-.-+..+++.|++.+|.|..
T Consensus       255 i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~--~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         255 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELD--AVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHH--HHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cCchhhHHHHHHhhhccCCCCCEEECCCCcCChH--HHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            5320     00111  236799999999972210  011122 111135577788888888753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.71  E-value=9.5e-07  Score=88.27  Aligned_cols=195  Identities=17%  Similarity=0.157  Sum_probs=114.4

Q ss_pred             cccCCCCccceeeecCCCCcc-----cchhhhcCCCccEEeccCCCCCcc-----CCc---------cccccccccEEec
Q 044550          424 ENVGKLIHLKYLNLSELRIER-----IPETLCELYNLQKLDIRGCQYLRG-----LPA---------GIRKLMNMRSLLN  484 (662)
Q Consensus       424 ~~i~~l~~Lr~L~L~~~~i~~-----lp~~i~~L~~L~~L~l~~~~~l~~-----lP~---------~i~~L~~L~~L~l  484 (662)
                      ..+..+++|++|+|++|.+..     +...+...++|+.|++++|. +..     +..         .....+.|+.+.+
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l  165 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIIC  165 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheeccccc-ccccccccccccccccccccccccCcccceeec
Confidence            445667889999999887653     55566778899999998886 321     000         1124567888888


Q ss_pred             CCCccc----cccCCcCCCCCCCCccCceeecCccCCCC-cc-CccccccCcccCccccccCCCCCCCCC-hhhhhhccc
Q 044550          485 DGTYLL----KYMPIGISRLTSLRTLEKFVVGGGVDGGG-TC-RLESLKNLQLLRKCSIEGLKGLSNVSH-VDEVERLQL  557 (662)
Q Consensus       485 ~~~~~~----~~~p~~i~~L~~L~~L~~~~~~~~~~~~~-~~-~l~~L~~L~~L~~L~i~~~~~~~~~~~-~~~~~~~~l  557 (662)
                      ++|...    ..+...+...+.|++|++..  +...... .. ....+...+.|+.|++++.   . +.. ........+
T Consensus       166 ~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~--n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N---~-i~~~g~~~L~~~l  239 (344)
T d2ca6a1         166 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQ--NGIRPEGIEHLLLEGLAYCQELKVLDLQDN---T-FTHLGSSALAIAL  239 (344)
T ss_dssp             CSSCCTGGGHHHHHHHHHHCTTCCEEECCS--SCCCHHHHHHHHHTTGGGCTTCCEEECCSS---C-CHHHHHHHHHHHG
T ss_pred             ccccccccccccccchhhhhhhhccccccc--ccccccccccchhhhhcchhhhcccccccc---c-ccccccccccccc
Confidence            877532    12223344566777776432  2211000 00 1123455566666666543   1 111 112233456


Q ss_pred             cccccCCcEEEEecCCCCCCCCchhHHHHhhhCC--CCCCCcEEEEeecCCCC-----CCcccc-cccCccEEEecCCCC
Q 044550          558 YNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQ--PPLNVEELEIESYRGNI-----FPKWLT-SLTNLRELKLSLCVN  629 (662)
Q Consensus       558 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~--~~~~L~~L~l~~~~~~~-----lP~~i~-~l~~L~~L~L~~~~~  629 (662)
                      ..+++|+.|++++|..     .......+.+.+.  +.++|++|++++|....     +...+. .+++|++|+|++|..
T Consensus       240 ~~~~~L~~L~Ls~n~i-----~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         240 KSWPNLRELGLNDCLL-----SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             GGCTTCCEEECTTCCC-----CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             cccccchhhhhhcCcc-----CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            7889999999987753     1222333444443  35789999999987532     233333 578999999999974


Q ss_pred             C
Q 044550          630 C  630 (662)
Q Consensus       630 ~  630 (662)
                      .
T Consensus       315 ~  315 (344)
T d2ca6a1         315 S  315 (344)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=3.5e-05  Score=67.19  Aligned_cols=83  Identities=24%  Similarity=0.244  Sum_probs=61.3

Q ss_pred             CCCCccceeeecCCCCcccc---hhhhcCCCccEEeccCCCCCccCCc-cccccccccEEecCCCccccccCC-------
Q 044550          427 GKLIHLKYLNLSELRIERIP---ETLCELYNLQKLDIRGCQYLRGLPA-GIRKLMNMRSLLNDGTYLLKYMPI-------  495 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~~i~~lp---~~i~~L~~L~~L~l~~~~~l~~lP~-~i~~L~~L~~L~l~~~~~~~~~p~-------  495 (662)
                      ..+++|++|+|++|.|+.++   ..+.++++|+.|++++|. +..++. ...+..+|+.|++++|........       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            45789999999999988664   457789999999999988 777765 233446789999999876433222       


Q ss_pred             cCCCCCCCCccCcee
Q 044550          496 GISRLTSLRTLEKFV  510 (662)
Q Consensus       496 ~i~~L~~L~~L~~~~  510 (662)
                      -+..+++|+.|+...
T Consensus       141 i~~~~P~L~~LDg~~  155 (162)
T d1koha1         141 IRERFPKLLRLDGHE  155 (162)
T ss_dssp             HHTTSTTCCEETTEE
T ss_pred             HHHHCCCCCEECcCC
Confidence            155678888887543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.52  E-value=0.0044  Score=58.26  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=41.7

Q ss_pred             CeeeCCCCChHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHhcCCchhHHHHHHhhcCCCCH
Q 044550          214 NIISIKQLAEEECWSLFKQLAFFGRSFEDREKLEPMGRKIARKCKGLPLAAKVIGNLLRSKSTV  277 (662)
Q Consensus       214 ~~~~l~~L~~~~s~~Lf~~~af~~~~~~~~~~~~~~~~~iv~~c~GlPLai~~ig~~L~~~~~~  277 (662)
                      ..+.+.+++.+++.+++.+.+-. ... ..++    .++|++.++|.|..+..+|..+......
T Consensus       201 ~~i~L~~l~~~e~~~~l~~~~~~-~~~-~~~~----~~~i~~~~~G~P~~L~~~~~~~~~~~~~  258 (283)
T d2fnaa2         201 STVELKPFSREEAIEFLRRGFQE-ADI-DFKD----YEVVYEKIGGIPGWLTYFGFIYLDNKNL  258 (283)
T ss_dssp             EEEEECCCCHHHHHHHHHHHHHH-HTC-CCCC----HHHHHHHHCSCHHHHHHHHHHHHHHCCH
T ss_pred             eEEeeCCCCHHHHHHHHHhhhhh-cCC-CHHH----HHHHHHHhCCCHHHHHHHHHHHHhcccH
Confidence            46789999999999998775422 111 1222    4689999999999999998766554443

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.00058  Score=59.05  Aligned_cols=81  Identities=20%  Similarity=0.126  Sum_probs=58.0

Q ss_pred             hHhhhcCcccccc---cccccccC---cccCCCCccceeeecCCCCcccch-hhhcCCCccEEeccCCCCCccCCc----
Q 044550          403 SELFSKLVFLRAL---RNWIREIP---ENVGKLIHLKYLNLSELRIERIPE-TLCELYNLQKLDIRGCQYLRGLPA----  471 (662)
Q Consensus       403 ~~~~~~l~~Lrvl---~~~~~~lp---~~i~~l~~Lr~L~L~~~~i~~lp~-~i~~L~~L~~L~l~~~~~l~~lP~----  471 (662)
                      +..+..+..|+++   +|.++.++   ..+..+++|++|+|++|.|+.+++ ...+..+|+.|++.+|........    
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y  137 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY  137 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHH
T ss_pred             HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhH
Confidence            3334556666666   57777653   445679999999999999999876 334556799999999983333222    


Q ss_pred             ---cccccccccEEe
Q 044550          472 ---GIRKLMNMRSLL  483 (662)
Q Consensus       472 ---~i~~L~~L~~L~  483 (662)
                         .+..+++|+.||
T Consensus       138 ~~~i~~~~P~L~~LD  152 (162)
T d1koha1         138 ISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHTTSTTCCEET
T ss_pred             HHHHHHHCCCCCEEC
Confidence               246789999986

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.0037  Score=63.39  Aligned_cols=103  Identities=20%  Similarity=0.290  Sum_probs=66.3

Q ss_pred             ceeEEEEecCCCCCcccccccccccccchHhhhcCcccccc---ccccc-----ccCcccCCCCccceeeecCCCCcc--
Q 044550          375 NVRHLGLNFQRGASFPMSIHRFNRFSILSELFSKLVFLRAL---RNWIR-----EIPENVGKLIHLKYLNLSELRIER--  444 (662)
Q Consensus       375 ~~r~l~l~~~~~~~~~~~~~~l~~l~~~~~~~~~l~~Lrvl---~~~~~-----~lp~~i~~l~~Lr~L~L~~~~i~~--  444 (662)
                      +++.|.++++.+...  .         +...++.++.++++   +|.++     .++..+..+++|++|+|++|.|+.  
T Consensus         3 ~l~~ld~~~~~i~~~--~---------~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~   71 (460)
T d1z7xw1           3 DIQSLDIQCEELSDA--R---------WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG   71 (460)
T ss_dssp             EEEEEEEESCCCCHH--H---------HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH
T ss_pred             CCCEEEeeCCcCChH--H---------HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH
Confidence            456667766666521  0         11224445555555   45544     345556788999999999998752  


Q ss_pred             ---cchhhh-cCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc
Q 044550          445 ---IPETLC-ELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       445 ---lp~~i~-~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  489 (662)
                         +...+. ...+|++|++++|. +..     ++..+..+++|++|++++|..
T Consensus        72 ~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          72 VHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             HHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHHhcCCCCCCEEECCCCC-ccccccccccchhhccccccccccccccc
Confidence               222222 23479999999987 533     455677889999999998853

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.0014  Score=66.72  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=59.8

Q ss_pred             cCCCCccceeeecCCCCc-----ccchhhhcCCCccEEeccCCCCCcc-----CCcccc-ccccccEEecCCCcccc---
Q 044550          426 VGKLIHLKYLNLSELRIE-----RIPETLCELYNLQKLDIRGCQYLRG-----LPAGIR-KLMNMRSLLNDGTYLLK---  491 (662)
Q Consensus       426 i~~l~~Lr~L~L~~~~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~-~L~~L~~L~l~~~~~~~---  491 (662)
                      +..+++|+.|+|++|.++     .++..+..+++|+.||+++|. +..     +...+. ...+|++|++++|....   
T Consensus        23 ~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~  101 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGC  101 (460)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGH
T ss_pred             HHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCcccccc
Confidence            445789999999999876     456677899999999999987 532     222222 23579999999996522   


Q ss_pred             -ccCCcCCCCCCCCccCc
Q 044550          492 -YMPIGISRLTSLRTLEK  508 (662)
Q Consensus       492 -~~p~~i~~L~~L~~L~~  508 (662)
                       .++..+..+++|+.|++
T Consensus       102 ~~l~~~l~~~~~L~~L~L  119 (460)
T d1z7xw1         102 GVLSSTLRTLPTLQELHL  119 (460)
T ss_dssp             HHHHHHTTSCTTCCEEEC
T ss_pred             ccccchhhcccccccccc
Confidence             24556788889999864

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=90.17  E-value=0.02  Score=49.10  Aligned_cols=68  Identities=13%  Similarity=0.110  Sum_probs=45.7

Q ss_pred             cccccccCCcEEEEecCCCCCCCCchhHHHHhhhCCCCCCCcEEEEeecCCCCCCc--------ccccccCccEEEecCC
Q 044550          556 QLYNKKNLLRLGLQFGGDIEGRRKNEKDKQLLEALQPPLNVEELEIESYRGNIFPK--------WLTSLTNLRELKLSLC  627 (662)
Q Consensus       556 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~lP~--------~i~~l~~L~~L~L~~~  627 (662)
                      .+..++.|+.|+++++..     .......+.+.+...++|++|+++++....+..        .+..-++|++|+++.+
T Consensus        67 ~L~~n~~L~~L~L~~n~i-----~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          67 LIETSPSLRVLNVESNFL-----TPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHHCSSCCEEECCSSBC-----CHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hhhhcccccceeeehhhc-----chHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            345667888888887743     223345566778888899999998876554321        2224578888888765


Q ss_pred             C
Q 044550          628 V  628 (662)
Q Consensus       628 ~  628 (662)
                      .
T Consensus       142 ~  142 (167)
T d1pgva_         142 S  142 (167)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=90.10  E-value=0.025  Score=48.39  Aligned_cols=62  Identities=19%  Similarity=0.259  Sum_probs=39.6

Q ss_pred             CCCCccceeeecCC-CCc-----ccchhhhcCCCccEEeccCCCCCcc-----CCccccccccccEEecCCCcc
Q 044550          427 GKLIHLKYLNLSEL-RIE-----RIPETLCELYNLQKLDIRGCQYLRG-----LPAGIRKLMNMRSLLNDGTYL  489 (662)
Q Consensus       427 ~~l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~l~~-----lP~~i~~L~~L~~L~l~~~~~  489 (662)
                      .+.+.|++|+|+++ .++     .+-..+...++|+.|++++|. +..     +-..+...++++.+++++|..
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~-l~~~~~~~L~~~l~~~~~l~~l~l~~~~~   86 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNFI   86 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSCC
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc-ccHHHHHHHHHHHhhcccchhhhhccccc
Confidence            34578888888874 344     234456677888888888886 321     222344567788888777643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=87.33  E-value=0.2  Score=42.46  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=42.0

Q ss_pred             CCccceeeecCC-CCc-----ccchhhhcCCCccEEeccCCCCCc-----cCCccccccccccEEecCCCcccc----cc
Q 044550          429 LIHLKYLNLSEL-RIE-----RIPETLCELYNLQKLDIRGCQYLR-----GLPAGIRKLMNMRSLLNDGTYLLK----YM  493 (662)
Q Consensus       429 l~~Lr~L~L~~~-~i~-----~lp~~i~~L~~L~~L~l~~~~~l~-----~lP~~i~~L~~L~~L~l~~~~~~~----~~  493 (662)
                      .++|+.|+|+++ .+.     .+-..+...++|+.|++++|. +.     .+...+...++|++|++++|....    .+
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~-l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc-cchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            466777777654 233     233345566667777777765 32     122233445667777777764421    12


Q ss_pred             CCcCCCCCCCCccC
Q 044550          494 PIGISRLTSLRTLE  507 (662)
Q Consensus       494 p~~i~~L~~L~~L~  507 (662)
                      -..+...++|++|+
T Consensus        93 ~~aL~~n~sL~~L~  106 (167)
T d1pgva_          93 LRSTLVTQSIVEFK  106 (167)
T ss_dssp             HHHTTTTCCCSEEE
T ss_pred             HHHHHhCCcCCEEE
Confidence            22355556677665

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=0.96  Score=41.17  Aligned_cols=40  Identities=15%  Similarity=0.230  Sum_probs=30.7

Q ss_pred             ceEEEEcccHHHHhhhCCC-------CeeeCCCCChHHHHHHHHHHh
Q 044550          195 SKIFVTTRNESVARMMGST-------NIISIKQLAEEECWSLFKQLA  234 (662)
Q Consensus       195 SrIivTTR~~~v~~~~~~~-------~~~~l~~L~~~~s~~Lf~~~a  234 (662)
                      =++|.||..+........+       ..+.+++++.+++.+++...+
T Consensus       148 i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         148 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK  194 (268)
T ss_dssp             CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHH
T ss_pred             CeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhh
Confidence            3788888888777665442       489999999999999886654

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.92  E-value=3.2  Score=36.27  Aligned_cols=109  Identities=8%  Similarity=0.035  Sum_probs=72.1

Q ss_pred             CceecccchHHHHHHHHhccCccCCCCeEEEEEecCCCc-----------------------------------------
Q 044550          143 GEVCGRVDEKNELLSKLLCESSEQQKGLHVISLVGLGGI-----------------------------------------  181 (662)
Q Consensus       143 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGi-----------------------------------------  181 (662)
                      .++||.++.++.+.+|+..+.-      ..+-++|+.|+                                         
T Consensus        14 ~divg~~~~~~~L~~~i~~~~~------~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~   87 (227)
T d1sxjc2          14 DEVYGQNEVITTVRKFVDEGKL------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIK   87 (227)
T ss_dssp             GGCCSCHHHHHHHHHHHHTTCC------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHH
T ss_pred             HHccCcHHHHHHHHHHHHcCCC------CeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchh
Confidence            5699999999999999975432      22458999998                                         


Q ss_pred             ------------------ccch-----------hhhhcCCCCceEEEEcccH-HHHhh-hCCCCeeeCCCCChHHHHHHH
Q 044550          182 ------------------EPFF-----------LRLKNGLHGSKIFVTTRNE-SVARM-MGSTNIISIKQLAEEECWSLF  230 (662)
Q Consensus       182 ------------------~~F~-----------~~l~~~~~gSrIivTTR~~-~v~~~-~~~~~~~~l~~L~~~~s~~Lf  230 (662)
                                        ++++           ..+......++++++|... .+... ......+++++++.++-.+..
T Consensus        88 ~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l  167 (227)
T d1sxjc2          88 DFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRI  167 (227)
T ss_dssp             HHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHH
T ss_pred             hccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhcccccccccccccc
Confidence                              0011           3344445667777777653 33332 223568999999999988888


Q ss_pred             HHHhhcCCCCCCccchHHHHHHHHHHhcCCc
Q 044550          231 KQLAFFGRSFEDREKLEPMGRKIARKCKGLP  261 (662)
Q Consensus       231 ~~~af~~~~~~~~~~~~~~~~~iv~~c~GlP  261 (662)
                      .+.+-..+- ..+   .+..+.|++.|+|-.
T Consensus       168 ~~I~~~e~i-~i~---~~~l~~i~~~s~Gd~  194 (227)
T d1sxjc2         168 ANVLVHEKL-KLS---PNAEKALIELSNGDM  194 (227)
T ss_dssp             HHHHHTTTC-CBC---HHHHHHHHHHHTTCH
T ss_pred             ccccccccc-cCC---HHHHHHHHHHcCCcH
Confidence            876654322 111   355688999998853