Citrus Sinensis ID: 044555

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220--
MEIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKTM
cHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHHHccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHccccccccccEEEHHHHHHHHHHHHcccccEEEEEccccccEEEEEEEEEEccccccccccccccccccccccEEccccccc
cHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccccccccccHcEEEccccccccccccccccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHccccccccccEEcHHHHHHHHHHHHccccccEEcccccccEEEEEEEEEEcccccccccccccccccccccccEEccccccc
MEIKLLFLSTLVLLVCCIArnnfdhfllvqtwphgyceriprncsirnYFVIHGLWPVTAKGKAFLsrkrkrvnvsdtigrgnlftdmryywpgltktdlnlwedqwfahgsdsplvpldyFQRTIQLRKLVDLVKALGdvgivprykgfthhkstYRQGIMKITGHNNTILKCysskrghlLSEVMLCAdadarnfidcnpeefqqqncgpdilfskgktm
MEIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKgkaflsrkrkrvnvsdtigrgnlftdmryYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDvgivprykgfthhKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPeefqqqncgpdilfskgktm
MEIKllflstlvllVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKTM
**IKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQ***C************
*EIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVS*TIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDC***************FSKGK**
MEIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKTM
MEIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKG***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEIKLLFLSTLVLLVCCIARNNFDHFLLVQTWPHGYCERIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKTM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query222 2.2.26 [Sep-21-2011]
P80196237 Intracellular ribonucleas N/A no 0.923 0.864 0.322 1e-21
P42813230 Ribonuclease 1 OS=Arabido yes no 0.851 0.821 0.299 9e-15
P83618238 Ribonuclease-like storage N/A no 0.738 0.689 0.299 2e-14
P42815222 Ribonuclease 3 OS=Arabido no no 0.878 0.878 0.271 2e-13
P04007214 Ribonuclease S-2 OS=Nicot N/A no 0.842 0.873 0.287 5e-13
Q38716235 Ribonuclease S-2 OS=Antir N/A no 0.819 0.774 0.296 1e-12
P80022230 Extracellular ribonucleas N/A no 0.918 0.886 0.269 9e-12
Q7M438223 Ribonuclease DdI OS=Dicty yes no 0.788 0.784 0.282 1e-11
Q40875222 Ribonuclease S-3 OS=Petun N/A no 0.918 0.918 0.279 2e-11
O80324229 Ribonuclease S-6 OS=Pyrus N/A no 0.864 0.838 0.256 2e-11
>sp|P80196|RNLX_SOLLC Intracellular ribonuclease LX OS=Solanum lycopersicum GN=RNALX PE=1 SV=2 Back     alignment and function desciption
 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 93/217 (42%), Gaps = 12/217 (5%)

Query: 13  LLVCCIARNNFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGKAFLS 67
           LLV C+   +FD F  VQ WP  YC+       P        F IHGLWP    GK    
Sbjct: 18  LLVLCVTSQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGK--WP 75

Query: 68  RKRKRVNVSDTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLVPLDYFQR 124
           +   R +  D     +L + M   WP L   +   L  W  +W  HG+ S L    YFQ 
Sbjct: 76  QNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTCSALNQHAYFQT 135

Query: 125 TIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLS 184
            +  +   +L++ L + GI PR  G  +   + ++ I K  GH   I     S+  H L 
Sbjct: 136 ALDFKTKSNLLQNLNNAGIKPR-NGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLY 194

Query: 185 EVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKT 221
           +V LC D+ A  FIDC P       CG  I F    T
Sbjct: 195 QVYLCVDSSASKFIDC-PIFPHGGKCGSKIEFPSFST 230

Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 2EC: 7EC: .EC: 1
>sp|P42813|RNS1_ARATH Ribonuclease 1 OS=Arabidopsis thaliana GN=RNS1 PE=1 SV=1 Back     alignment and function description
>sp|P83618|RN28_PANGI Ribonuclease-like storage protein OS=Panax ginseng PE=1 SV=2 Back     alignment and function description
>sp|P42815|RNS3_ARATH Ribonuclease 3 OS=Arabidopsis thaliana GN=RNS3 PE=2 SV=1 Back     alignment and function description
>sp|P04007|RNS2_NICAL Ribonuclease S-2 OS=Nicotiana alata GN=S-2 PE=1 SV=1 Back     alignment and function description
>sp|Q38716|RNS2_ANTHI Ribonuclease S-2 OS=Antirrhinum hispanicum GN=S2 PE=2 SV=1 Back     alignment and function description
>sp|P80022|RNLE_SOLLC Extracellular ribonuclease LE OS=Solanum lycopersicum PE=1 SV=2 Back     alignment and function description
>sp|Q7M438|RNDI_DICDI Ribonuclease DdI OS=Dictyostelium discoideum GN=ddiA PE=1 SV=3 Back     alignment and function description
>sp|Q40875|RNS3_PETHY Ribonuclease S-3 OS=Petunia hybrida GN=S3 PE=3 SV=1 Back     alignment and function description
>sp|O80324|RNS6_PYRPY Ribonuclease S-6 OS=Pyrus pyrifolia PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
4582642233 ribonuclease T2 [Solanum lycopersicum] 0.923 0.879 0.322 7e-20
350537479237 intracellular ribonuclease LX precursor 0.923 0.864 0.322 7e-20
5902456236 RNase NGR3 [Nicotiana glutinosa] gi|3162 0.896 0.843 0.316 2e-18
351722053226 uncharacterized protein LOC100306447 pre 0.950 0.933 0.306 2e-17
357487007230 Ribonuclease T2 [Medicago truncatula] gi 0.932 0.9 0.305 4e-17
223670932225 S-like ribonuclease [Dionaea muscipula] 0.923 0.911 0.288 8e-17
449478669240 PREDICTED: LOW QUALITY PROTEIN: extracel 0.846 0.783 0.309 2e-16
66360282217 Chain A, Crystal Structure Of The Rnase 0.860 0.880 0.305 2e-16
357487003228 Ribonuclease T2 [Medicago truncatula] gi 0.896 0.872 0.302 2e-16
449435342240 PREDICTED: extracellular ribonuclease LE 0.846 0.783 0.309 2e-16
>gi|4582642|emb|CAB40355.1| ribonuclease T2 [Solanum lycopersicum] Back     alignment and taxonomy information
 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 70/217 (32%), Positives = 93/217 (42%), Gaps = 12/217 (5%)

Query: 13  LLVCCIARNNFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGKAFLS 67
           LLV C+   +FD F  VQ WP  YC+       P        F IHGLWP    GK    
Sbjct: 18  LLVLCVTSQDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYKDGK--WP 75

Query: 68  RKRKRVNVSDTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLVPLDYFQR 124
           +   R +  D     +L + M   WP L   +   L  W  +W  HG+ S L    YFQ 
Sbjct: 76  QNCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTCSALNQHAYFQT 135

Query: 125 TIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLS 184
            +  +   +L++ L + GI PR  G  +   + ++ I K  GH   I     S+  H L 
Sbjct: 136 ALDFKTKSNLLQNLNNAGIKPR-NGDYYGVESIKKAIEKGVGHTPFIECNVDSQGNHQLY 194

Query: 185 EVMLCADADARNFIDCNPEEFQQQNCGPDILFSKGKT 221
           +V LC D+ A  FIDC P       CG  I F    T
Sbjct: 195 QVYLCVDSSASKFIDC-PIFPHGGKCGSKIEFPSFST 230

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|350537479|ref|NP_001234551.1| intracellular ribonuclease LX precursor [Solanum lycopersicum] gi|1710616|sp|P80196.2|RNLX_SOLLC RecName: Full=Intracellular ribonuclease LX; Short=RNase LX; Flags: Precursor gi|895857|emb|CAA55896.1| ribonuclease [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|5902456|dbj|BAA84469.1| RNase NGR3 [Nicotiana glutinosa] gi|31620998|dbj|BAC77611.1| ribonuclease NGR3 [Nicotiana glutinosa] Back     alignment and taxonomy information
>gi|351722053|ref|NP_001235183.1| uncharacterized protein LOC100306447 precursor [Glycine max] gi|255628569|gb|ACU14629.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|357487007|ref|XP_003613791.1| Ribonuclease T2 [Medicago truncatula] gi|355515126|gb|AES96749.1| Ribonuclease T2 [Medicago truncatula] gi|388521185|gb|AFK48654.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|223670932|dbj|BAH22709.1| S-like ribonuclease [Dionaea muscipula] Back     alignment and taxonomy information
>gi|449478669|ref|XP_004155386.1| PREDICTED: LOW QUALITY PROTEIN: extracellular ribonuclease LE-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|66360282|pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp gi|66360285|pdb|1VD1|A Chain A, Crystal Structure Of Rnase Nt In Complex With 5'-Amp gi|66360286|pdb|1VD3|A Chain A, Ribonuclease Nt In Complex With 2'-ump Back     alignment and taxonomy information
>gi|357487003|ref|XP_003613789.1| Ribonuclease T2 [Medicago truncatula] gi|355515124|gb|AES96747.1| Ribonuclease T2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|449435342|ref|XP_004135454.1| PREDICTED: extracellular ribonuclease LE-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query222
UNIPROTKB|P83618238 P83618 "Ribonuclease-like stor 0.756 0.705 0.303 1.1e-16
UNIPROTKB|Q940D3252 Q940D3 "RNase S-like protein" 0.864 0.761 0.274 2.9e-16
TAIR|locus:2056755230 RNS1 "ribonuclease 1" [Arabido 0.842 0.813 0.309 2.9e-16
TAIR|locus:2200665222 RNS3 "ribonuclease 3" [Arabido 0.783 0.783 0.294 1e-13
TAIR|locus:2035871228 AT1G14220 [Arabidopsis thalian 0.860 0.837 0.279 2.1e-13
DICTYBASE|DDB_G0281293223 ddiA "ribonuclease T2" [Dictyo 0.810 0.807 0.284 4.4e-13
UNIPROTKB|F1P285201 RNASET2 "Uncharacterized prote 0.761 0.840 0.284 3.1e-12
UNIPROTKB|E1C5F2266 RNASET2 "Uncharacterized prote 0.711 0.593 0.288 6.9e-12
UNIPROTKB|Q0III8291 RNASET2 "Uncharacterized prote 0.711 0.542 0.279 1.4e-11
UNIPROTKB|F1SBX8229 LOC100157985 "Uncharacterized 0.797 0.772 0.290 2.8e-11
UNIPROTKB|P83618 P83618 "Ribonuclease-like storage protein" [Panax ginseng (taxid:4054)] Back     alignment and assigned GO terms
 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 58/191 (30%), Positives = 89/191 (46%)

Query:    26 FLLVQTWPHGYCERIPRNC---SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIGRG 82
             F L   WP G+CE +   C   S+ N F IHGL+P  AKG   L       +V+      
Sbjct:    32 FALRLQWPAGFCE-VNNACDTKSLLNTFTIHGLYPYNAKGTPALYCDGTAFDVNSV---S 87

Query:    83 NLFTDMRYYWPGL-TKT-DLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKLVDLVKAL 138
             +   +M   WP   T T D+  WE +W  HG  S++ L   DYF+  +  RK  D+V  L
Sbjct:    88 DFLAEMHLAWPSHETNTEDIQFWEHEWKKHGRCSEALLKQTDYFRTALAFRKAFDIVGLL 147

Query:   139 GDVGIVPRYKGFTHHKSTYRQGIMK--ITGHNNTILKCYSSKRG---HLLSEVMLCADAD 193
                GI P       +   YR  ++K  I  H N + +   +K     ++L+++ +C +  
Sbjct:   148 NQEGIYP-------NNDLYRPKMIKEAIKKHLNAVPEIDFTKNENSEYVLTDINVCVNQQ 200

Query:   194 ARNFIDCNPEE 204
             A  F+DC  ++
Sbjct:   201 ATRFVDCPTDD 211
GO:0003674 "molecular_function" evidence=ND
GO:0005575 "cellular_component" evidence=ND
GO:0008150 "biological_process" evidence=ND
UNIPROTKB|Q940D3 Q940D3 "RNase S-like protein" [Oryza sativa (taxid:4530)] Back     alignment and assigned GO terms
TAIR|locus:2056755 RNS1 "ribonuclease 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200665 RNS3 "ribonuclease 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035871 AT1G14220 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0281293 ddiA "ribonuclease T2" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1P285 RNASET2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5F2 RNASET2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0III8 RNASET2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBX8 LOC100157985 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.27.1LOW CONFIDENCE prediction!
3rd Layer3.1.270.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
cd01061195 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) 3e-36
cd00374195 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a 4e-33
pfam00445182 pfam00445, Ribonuclease_T2, Ribonuclease T2 family 2e-32
cd01062184 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) 1e-09
COG3719249 COG3719, Rna, Ribonuclease I [Translation, ribosom 3e-08
>gnl|CDD|238512 cd01061, RNase_T2_euk, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information 
 Score =  125 bits (317), Expect = 3e-36
 Identities = 65/202 (32%), Positives = 89/202 (44%), Gaps = 15/202 (7%)

Query: 23  FDHFLLVQTWPHGYCERIPRNC--SIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVSDTIG 80
           FD+  LV  WP  YC   P  C     + F IHGLWP    G  +        N  D+I 
Sbjct: 1   FDYLQLVLQWPDTYCSTGPCCCRPPPPDSFTIHGLWPDNCSG-TYPQFCDSSSNF-DSIL 58

Query: 81  RGNLFTDMRYYWPGLT--KTDLNLWEDQWFAHG---SDSPLVPLDYFQRTIQLRKLVDLV 135
             +L  ++  YWP LT  K + + WE +W  HG   S       DYF   ++L+  +DL+
Sbjct: 59  ISDLLNELNKYWPDLTGPKNNQSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLL 118

Query: 136 KALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADADAR 195
           K L   GIVP  +  T+  S  +  I   TG    ++KC        L+E+ +C D    
Sbjct: 119 KILAKAGIVPSTQ--TYTLSDIQNAIKAATG-VTPVIKCSKDPGKGELNEIWICFDKKGG 175

Query: 196 NFIDCNPEEFQQQNCGPD-ILF 216
            FIDC      +  C  D I F
Sbjct: 176 EFIDCPR--PPKSTCPDDGIKF 195

This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members. Length = 195
>gnl|CDD|238220 cd00374, RNase_T2, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|215923 pfam00445, Ribonuclease_T2, Ribonuclease T2 family Back     alignment and domain information
>gnl|CDD|238513 cd01062, RNase_T2_prok, Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>gnl|CDD|226242 COG3719, Rna, Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 222
cd01061195 RNase_T2_euk Ribonuclease T2 (RNase T2) is a wides 100.0
cd00374195 RNase_T2 Ribonuclease T2 (RNase T2) is a widesprea 100.0
PF00445189 Ribonuclease_T2: Ribonuclease T2 family; InterPro: 100.0
KOG1642263 consensus Ribonuclease, T2 family [RNA processing 100.0
cd01062184 RNase_T2_prok Ribonuclease T2 (RNase T2) is a wide 100.0
PRK10095268 ribonuclease I; Provisional 100.0
COG3719249 Rna Ribonuclease I [Translation, ribosomal structu 100.0
>cd01061 RNase_T2_euk Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information 
Probab=100.00  E-value=1.6e-53  Score=353.84  Aligned_cols=185  Identities=33%  Similarity=0.659  Sum_probs=157.8

Q ss_pred             cceEEEEEEcccccccccCCCCCCC--CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHhccCCCCccC
Q 044555           23 FDHFLLVQTWPHGYCERIPRNCSIR--NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMRYYWPGLTKT   98 (222)
Q Consensus        23 fd~~~l~~~W~p~~C~~~~~~C~~~--~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~~~Wp~~~~~   98 (222)
                      ||||+||++|||+||+..+..|..+  .+||||||||++.  ++|++|+...    -++....+++..+|+.+||++...
T Consensus         1 ~d~~~l~~~Wpps~C~~~~~~c~~~~~~~ftiHGLWP~~~~g~~p~~C~~~~----~~~~~~~~~l~~~L~~~Wp~l~~~   76 (195)
T cd01061           1 FDYLQLVLQWPDTYCSTGPCCCRPPPPDSFTIHGLWPDNCSGTYPQFCDSSS----NFDSILISDLLNELNKYWPDLTGP   76 (195)
T ss_pred             CCeEEEEEECCCCcccCCCCcCCCCCcccCEEeccCCCCCCCCCCCCCCCcc----cCCcccchhhhHHHhccCCCCcCC
Confidence            7999999999999996544566443  9999999999987  4689998631    111222368899999999999876


Q ss_pred             --CcchhhhhcceeeecCC---CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHHhCCcceEEE
Q 044555           99 --DLNLWEDQWFAHGSDSP---LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILK  173 (222)
Q Consensus        99 --~~~fw~hEW~KHGtC~~---~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~~g~~~~~l~  173 (222)
                        +..||+|||.|||||++   .++.+||++|++|++++|+..+|+++||+|+ .+. |++++|++||++++|.. |.|+
T Consensus        77 ~~~~~fw~hEW~KHGTC~~~~~~~~~~YF~~a~~l~~~~~~~~~L~~~~I~P~-~~~-~~~~~i~~ai~~~~g~~-~~l~  153 (195)
T cd01061          77 KNNQSFWEHEWNKHGTCSSTLLYNQYDYFDTALKLKDKLDLLKILAKAGIVPS-TQT-YTLSDIQNAIKAATGVT-PVIK  153 (195)
T ss_pred             CCcchHHHHHHhhCcEeCCCcccCHHHHHHHHHHHHHHCCHHHHHHHCCcCCC-CcE-EcHHHHHHHHHHHHCCC-cEEE
Confidence              67799999999999999   8999999999999999999999999999997 477 99999999999999999 9999


Q ss_pred             eeeCCCCCeEEEEEEEEecCCCceecCCCCCcCCCCCC-CCeEe
Q 044555          174 CYSSKRGHLLSEVMLCADADARNFIDCNPEEFQQQNCG-PDILF  216 (222)
Q Consensus       174 C~~~~~~~~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~-~~i~~  216 (222)
                      |.+++++++|.||+||||+++..+++||...  ..+|| ++|+|
T Consensus       154 C~~~~~~~~L~Ev~iC~~k~~~~~~~C~~~~--~~~C~~~~i~f  195 (195)
T cd01061         154 CSKDPGKGELNEIWICFDKKGGEFIDCPRPP--KSTCPDDGIKF  195 (195)
T ss_pred             eCcCCCCcEEEEEEEEEECCCCeEeeCCCCC--CCCCCCCceEC
Confidence            9876544599999999999954599999864  34799 77775

This family includes RNase Rh, RNase MC1, RNase LE, and self-incompatibility RNases (S-RNases). Plant T2 RNases are expressed during leaf senescence in order to scavenge phosphate from ribonucleotides. They are also expressed in response to wounding or pathogen invasion. S-RNases are thought to prevent self-fertilization by acting as selective cytotoxins of "self" pollen. Generally, RNases have two distinct binding sites: the primary site (B1 site) and the subsite (B2 site), for nucleotides located at the 5'- and 3'- terminal ends of the sessil bond, respectively. This CD includes the eukaryotic RNase T2 family members.
>cd00374 RNase_T2 Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PF00445 Ribonuclease_T2: Ribonuclease T2 family; InterPro: IPR001568 The fungal ribonucleases T2 from Aspergillus oryzae, M from Aspergillus saitoi and Rh from Rhizopus niveus are structurally and functionally related 30 Kd glycoproteins [] that cleave the 3'-5' internucleotide linkage of RNA via a nucleotide 2',3'-cyclic phosphate intermediate (3 Back     alignment and domain information
>KOG1642 consensus Ribonuclease, T2 family [RNA processing and modification] Back     alignment and domain information
>cd01062 RNase_T2_prok Ribonuclease T2 (RNase T2) is a widespread family of secreted RNases found in every organism examined thus far Back     alignment and domain information
>PRK10095 ribonuclease I; Provisional Back     alignment and domain information
>COG3719 Rna Ribonuclease I [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1vcz_A217 Crystal Structure Of The Rnase Nt In Complex With 5 3e-19
1iyb_A208 Crystal Structure Of The Nicotiana Glutinosa Ribonu 3e-13
1dix_A208 Crystal Structure Of Rnase Le Length = 208 2e-11
3t0o_A238 Crystal Structure Analysis Of Human Rnase T2 Length 5e-11
1j1f_A191 Crystal Structure Of The Rnase Mc1 Mutant N71t In C 5e-09
1bk7_A190 Ribonuclease Mc1 From The Seeds Of Bitter Gourd Len 9e-09
1j1g_A190 Crystal Structure Of The Rnase Mc1 Mutant N71s In C 2e-08
1v9h_A197 Crystal Structure Of The Rnase Mc1 Mutant Y101a In 2e-08
3d3z_A247 Crystal Structure Of Actibind A T2 Rnase Length = 2 2e-08
3tbj_A237 The 1.7a Crystal Structure Of Actibind A T2 Ribonuc 3e-08
1ucg_A190 Crystal Structure Of Ribonuclease Mc1 N71t Mutant L 6e-08
1ioo_A196 Crystal Structure Of Nicotiana Alata Gemetophytic S 6e-07
1bol_A222 The Crystal Structure Of Ribonuclease Rh From Rhizo 6e-07
1iqq_A200 Crystal Structure Of Japanese Pear S3-Rnase Length 6e-05
1sgl_A209 The Three-Dimensional Structure And X-Ray Sequence 7e-04
1jy5_A212 Rnase-Related Protein From Calystegia Sepium Length 7e-04
>pdb|1VCZ|A Chain A, Crystal Structure Of The Rnase Nt In Complex With 5'-Gmp Length = 217 Back     alignment and structure 
Iteration: 1

 Score = 91.7 bits (226), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 62/203 (30%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Query: 22  NFDHFLLVQTWPHGYCER-----IPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVS 76
           +FD F  VQ WP  YC+       P        F IHGLWP    GK    +   R +  
Sbjct: 7   DFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGK--WPQNCDRESSL 64
Query: 77  DTIGRGNLFTDMRYYWPGL---TKTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLVD 133
           D     +L + M   WP L   +   +  W  +W  HG+ S L    YFQ  +  RK  +
Sbjct: 65  DESEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKSN 124
Query: 134 LVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADAD 193
           L++ L +  I PR  G  +   + ++ I +  GH+  I     ++  H + +V LC D  
Sbjct: 125 LLENLKNAEITPR-NGEHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDKT 183
Query: 194 ARNFIDCNPEEFQQQNCGPDILF 216
           A +FIDC P     + CG  I F
Sbjct: 184 ATDFIDC-PIFPHGRGCGSKIEF 205
>pdb|1IYB|A Chain A, Crystal Structure Of The Nicotiana Glutinosa Ribonuclease Nw Length = 208 Back     alignment and structure
>pdb|1DIX|A Chain A, Crystal Structure Of Rnase Le Length = 208 Back     alignment and structure
>pdb|3T0O|A Chain A, Crystal Structure Analysis Of Human Rnase T2 Length = 238 Back     alignment and structure
>pdb|1J1F|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71t In Complex With 5'-Gmp Length = 191 Back     alignment and structure
>pdb|1BK7|A Chain A, Ribonuclease Mc1 From The Seeds Of Bitter Gourd Length = 190 Back     alignment and structure
>pdb|1J1G|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant N71s In Complex With 5'-Gmp Length = 190 Back     alignment and structure
>pdb|1V9H|A Chain A, Crystal Structure Of The Rnase Mc1 Mutant Y101a In Complex With 5'-Ump Length = 197 Back     alignment and structure
>pdb|3D3Z|A Chain A, Crystal Structure Of Actibind A T2 Rnase Length = 247 Back     alignment and structure
>pdb|3TBJ|A Chain A, The 1.7a Crystal Structure Of Actibind A T2 Ribonucleases As Antitumorigenic Agents Length = 237 Back     alignment and structure
>pdb|1UCG|A Chain A, Crystal Structure Of Ribonuclease Mc1 N71t Mutant Length = 190 Back     alignment and structure
>pdb|1IOO|A Chain A, Crystal Structure Of Nicotiana Alata Gemetophytic Self-incompatibility Associated Sf11-rnase Length = 196 Back     alignment and structure
>pdb|1BOL|A Chain A, The Crystal Structure Of Ribonuclease Rh From Rhizopus Niveus At 2.0 A Resolution Length = 222 Back     alignment and structure
>pdb|1IQQ|A Chain A, Crystal Structure Of Japanese Pear S3-Rnase Length = 200 Back     alignment and structure
>pdb|1SGL|A Chain A, The Three-Dimensional Structure And X-Ray Sequence Reveal That Trichomaglin Is A Novel S-Like Ribonuclease Length = 209 Back     alignment and structure
>pdb|1JY5|A Chain A, Rnase-Related Protein From Calystegia Sepium Length = 212 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query222
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 8e-37
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 7e-36
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 3e-32
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 1e-30
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 9e-29
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 1e-27
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 3e-27
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 8e-27
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 4e-22
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 1e-19
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 8e-14
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Length = 217 Back     alignment and structure
 Score =  127 bits (320), Expect = 8e-37
 Identities = 61/204 (29%), Positives = 87/204 (42%), Gaps = 12/204 (5%)

Query: 21  NNFDHFLLVQTWPHGYCE-----RIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNV 75
            +FD F  VQ WP  YC+       P        F IHGLWP    GK   +  R+    
Sbjct: 6   QDFDFFYFVQQWPASYCDTRRSCCYPTTGKPDEDFSIHGLWPNYENGKWPQNCDRESSL- 64

Query: 76  SDTIGRGNLFTDMRYYWPGLT---KTDLNLWEDQWFAHGSDSPLVPLDYFQRTIQLRKLV 132
            D     +L + M   WP L       +  W  +W  HG+ S L    YFQ  +  RK  
Sbjct: 65  -DESEISDLISTMEKNWPSLACPSSDGVRFWSHEWLKHGTCSALGERAYFQAALDFRKKS 123

Query: 133 DLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCADA 192
           +L++ L +  I PR     +   + ++ I +  GH+  I     ++  H + +V LC D 
Sbjct: 124 NLLENLKNAEITPRNG-EHYTLESIKKAIEEGVGHSPYIECNVDTQGNHQIYQVYLCVDK 182

Query: 193 DARNFIDCNPEEFQQQNCGPDILF 216
            A +FIDC P     + CG  I F
Sbjct: 183 TATDFIDC-PIFPHGRGCGSKIEF 205
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Length = 208 Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Length = 196 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Length = 190 Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Length = 209 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Length = 238 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Length = 200 Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Length = 212 Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Length = 222 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Length = 245 Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Length = 247 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
1iyb_A208 Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP 100.0
1vcz_A217 RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.8 100.0
1sgl_A209 Trichomaglin; S-like ribonuclease, X-RAY sequence, 100.0
1ioo_A196 SF11-RNAse; SELF-incompatibility ribonuclease, hyd 100.0
1ucd_A190 Ribonuclease MC; alpha plus beta, hydrolase; HET: 100.0
1jy5_A212 CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2 100.0
1iqq_A200 S3-RNAse; japanese PEAR, SELF-incompatibilit famil 100.0
3t0o_A238 Ribonuclease T2, ribonuclease 6; rnaset2, alpha/be 100.0
1bol_A222 Protein (ribonuclease RH); ribonucleases, hydrolas 100.0
2pqx_A245 Ribonuclease I; hydrolase; HET: MES; 1.42A {Escher 100.0
3d3z_A247 Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {A 100.0
4dvk_A165 E(RNS) glycoprotein; T2 ribonuclease, virus envelo 99.84
>1iyb_A Ribonuclease, ribonuclease M5; hydrolase; HET: 5GP; 1.50A {Nicotiana glutinosa} SCOP: d.124.1.1 PDB: 1dix_A Back     alignment and structure
Probab=100.00  E-value=1.5e-58  Score=386.60  Aligned_cols=192  Identities=27%  Similarity=0.581  Sum_probs=163.8

Q ss_pred             cCCCCcceEEEEEEcccccccccCCCCCCC------CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHh
Q 044555           18 IARNNFDHFLLVQTWPHGYCERIPRNCSIR------NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMR   89 (222)
Q Consensus        18 ~~~~~fd~~~l~~~W~p~~C~~~~~~C~~~------~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~   89 (222)
                      .++++||||+|||+|||+|| ..++.|+.|      ..||||||||++.  +++++|+..+.    ++.....++.++|+
T Consensus         3 ~~~~~fD~~~l~l~Wpp~~C-~~~~~cc~p~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~----~~~~~i~~l~~~L~   77 (208)
T 1iyb_A            3 EFAQDFDFFYFVQQWPGSYC-DTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSP----YDQSQVSDLISRMQ   77 (208)
T ss_dssp             CCCCSCSEEEEEEECHHHHS-SSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSC----CCGGGGGGGHHHHH
T ss_pred             ccCCCceEEEEEEeCChHHh-cCCCCCCCCCCCCCCCCCEEccccCCCCCCCCCCCCCCCCC----CCchhcchhhhHhh
Confidence            46799999999999999999 566667653      7999999999976  46889976421    11111257899999


Q ss_pred             ccCCCCc---cCCcchhhhhcceeeecCCC--ChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHH
Q 044555           90 YYWPGLT---KTDLNLWEDQWFAHGSDSPL--VPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKI  164 (222)
Q Consensus        90 ~~Wp~~~---~~~~~fw~hEW~KHGtC~~~--~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~  164 (222)
                      ++||++.   .++..||+|||+|||||++.  +|.+||++|++|++++|++++|+++||+|++ ++ |++++|++||+++
T Consensus        78 ~~Wp~l~~~~~~~~~fW~hEw~KHGTC~~~~~~q~~YF~~a~~l~~~~~~~~~L~~~gI~P~~-~~-~t~~~I~~Ai~~~  155 (208)
T 1iyb_A           78 QNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDG-GF-YSLNSIKNAIRSA  155 (208)
T ss_dssp             HHSCCCCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSS-CE-EEHHHHHHHHHHH
T ss_pred             ccCCCcccCCCCcchHHHhhccCCeeeCccccCHHHHHHHHHHHHHHcChHHHHHHCCcccCC-ce-EeHHHHHHHHHHH
Confidence            9999996   23457999999999999996  9999999999999999999999999999965 67 9999999999999


Q ss_pred             hCCcceEEEeeeCCCCC-eEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCC
Q 044555          165 TGHNNTILKCYSSKRGH-LLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKG  219 (222)
Q Consensus       165 ~g~~~~~l~C~~~~~~~-~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~  219 (222)
                      +|.. |.|+|.++++++ +|.||+||||+++.++|+||... . .+|+++|.||+|
T Consensus       156 ~g~~-p~l~C~~~~~~~~~L~Ev~iC~~~~~~~~i~C~~~~-~-~~C~~~i~~p~f  208 (208)
T 1iyb_A          156 IGYA-PGIECNVDESGNSQLYQIYICVDGSGSNLIECPIFP-R-GKCGSSIEFPTF  208 (208)
T ss_dssp             HSSC-CEEEEEECTTCCEEEEEEEEEEETTSSSBCCCSCCC-C-CCCCSEEECCCC
T ss_pred             hCCC-eEEEEeeCCCCCeEEEEEEEEecCCCCeeecCCCCC-C-CCCCCCcCcCCC
Confidence            9999 999999876655 99999999999976699999743 2 379999999997
>1vcz_A RNAse NGR3; hydrolase, ribonuclease; HET: 5GP; 1.80A {Nicotiana glutinosa} PDB: 1vd1_A* 1vd3_A* Back     alignment and structure
>1sgl_A Trichomaglin; S-like ribonuclease, X-RAY sequence, MASS SPEC analysis, hydrolase; 2.20A {Trichosanthes lepiniana} SCOP: d.124.1.1 Back     alignment and structure
>1ioo_A SF11-RNAse; SELF-incompatibility ribonuclease, hydrolase; HET: NAG BMA MAN; 1.55A {Nicotiana alata} SCOP: d.124.1.1 Back     alignment and structure
>1ucd_A Ribonuclease MC; alpha plus beta, hydrolase; HET: U5P; 1.30A {Momordica charantia} SCOP: d.124.1.1 PDB: 1bk7_A* 1ucc_A* 1uca_A* 1v9h_A* 1j1f_A* 1ucg_A 1j1g_A* Back     alignment and structure
>1jy5_A CALSEPRRP; RNAse, alpha-beta protein, hydrolase; 2.05A {Calystegia sepium} SCOP: d.124.1.1 Back     alignment and structure
>1iqq_A S3-RNAse; japanese PEAR, SELF-incompatibilit family ribonuclease, hydrolase; HET: NAG BMA MAN; 1.50A {Pyrus pyrifolia} SCOP: d.124.1.1 Back     alignment and structure
>3t0o_A Ribonuclease T2, ribonuclease 6; rnaset2, alpha/beta fold, RNA cleavage, hydrol; HET: NAG; 1.59A {Homo sapiens} Back     alignment and structure
>1bol_A Protein (ribonuclease RH); ribonucleases, hydrolase; 2.00A {Rhizopus niveus} SCOP: d.124.1.1 Back     alignment and structure
>2pqx_A Ribonuclease I; hydrolase; HET: MES; 1.42A {Escherichia coli} PDB: 2ea1_A* 2pqy_A* 2z70_A* Back     alignment and structure
>3d3z_A Actibind; RNAse, hydrolase; HET: NAG D3Z; 1.70A {Aspergillus niger} Back     alignment and structure
>4dvk_A E(RNS) glycoprotein; T2 ribonuclease, virus envelope glycoprotein, viral protein; HET: NAG BMA MAN; 2.21A {Bovine viral diarrhea virus} PDB: 4dw5_A* 4dvl_A* 4dvn_A* 4dw3_A* 4dw4_A* 4dwc_A* 4dwa_A* 4dw7_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 222
d1iyba_208 d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxI 3e-35
d1ucda_190 d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Mom 3e-34
d1iooa_196 d.124.1.1 (A:) Gemetophytic self-incompatibility a 7e-32
d1iqqa_200 d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyri 9e-30
d1jy5a_207 d.124.1.1 (A:) RNase-related protein {Hedge bindwe 1e-24
d1sgla_206 d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes 4e-24
d1bola_222 d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [T 8e-23
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Length = 208 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

 Score =  122 bits (306), Expect = 3e-35
 Identities = 52/205 (25%), Positives = 82/205 (40%), Gaps = 16/205 (7%)

Query: 22  NFDHFLLVQTWPHGYCE-----RIPRNCSIRNYFVIHGLWPVTAKGKAFLSRKRKRVNVS 76
           +FD F  VQ WP  YC+       P+     + F IHGLWP    G    +         
Sbjct: 7   DFDFFYFVQQWPGSYCDTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSPY-- 64

Query: 77  DTIGRGNLFTDMRYYWPGLT---KTDLNLWEDQWFAHG--SDSPLVPLDYFQRTIQLRKL 131
           D     +L + M+  WP L     T    W  +W  HG  +++      YF++ + L+  
Sbjct: 65  DQSQVSDLISRMQQNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQ 124

Query: 132 VDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKITGHNNTILKCYSSKRGHLLSEVMLCAD 191
           ++L++ L   GI P   G  +  ++ +  I    G+   I           L ++ +C D
Sbjct: 125 INLLEILQGAGIHPD--GGFYSLNSIKNAIRSAIGYAPGIECNVDESGNSQLYQIYICVD 182

Query: 192 ADARNFIDCNPEEFQQQNCGPDILF 216
               N I+C    F +  CG  I F
Sbjct: 183 GSGSNLIECP--IFPRGKCGSSIEF 205
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Length = 190 Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Length = 196 Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Length = 200 Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Length = 207 Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Length = 206 Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query222
d1iyba_208 RNase NW {Nicotiana glutinosa [TaxId: 35889]} 100.0
d1ucda_190 Ribonuclease MC1 {Bitter gourd (Momordica charanti 100.0
d1iooa_196 Gemetophytic self-incompatibility associated SF11- 100.0
d1sgla_206 Trichomaglin {Gourd (Trichosanthes lepiniana) [Tax 100.0
d1jy5a_207 RNase-related protein {Hedge bindweed (Calystegia 100.0
d1iqqa_200 S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 100.0
d1bola_222 Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} 100.0
>d1iyba_ d.124.1.1 (A:) RNase NW {Nicotiana glutinosa [TaxId: 35889]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribonuclease Rh-like
superfamily: Ribonuclease Rh-like
family: Ribonuclease Rh-like
domain: RNase NW
species: Nicotiana glutinosa [TaxId: 35889]

Probab=100.00  E-value=4.1e-58  Score=381.94  Aligned_cols=192  Identities=27%  Similarity=0.583  Sum_probs=165.0

Q ss_pred             cCCCCcceEEEEEEcccccccccCCCCCCC------CceEEeeeeecCC--CCCCCCCcccccccccccccCCCchHHHh
Q 044555           18 IARNNFDHFLLVQTWPHGYCERIPRNCSIR------NYFVIHGLWPVTA--KGKAFLSRKRKRVNVSDTIGRGNLFTDMR   89 (222)
Q Consensus        18 ~~~~~fd~~~l~~~W~p~~C~~~~~~C~~~------~~ftIHGLWP~~~--~~~~~c~~~~~~~~~~~~~~~~~l~~~L~   89 (222)
                      ..+++||||+||++|||+|| +.++.|+.+      .+||||||||++.  ++|++|+..+.    .+....+++..+|+
T Consensus         3 ~~~~~fDy~~l~~~Wpp~~C-~~~~~~~~~~~~~~~~~ftIHGLWP~~~~g~~p~~C~~~~~----~~~~~~~~l~~~l~   77 (208)
T d1iyba_           3 EFAQDFDFFYFVQQWPGSYC-DTKQSCCYPKTGKPASDFGIHGLWPNNNDGSYPSNCDSNSP----YDQSQVSDLISRMQ   77 (208)
T ss_dssp             CCCCSCSEEEEEEECHHHHS-SSSSCCCCCTTCSCCSSCEEEEEEEECTTSCCCBSCCTTSC----CCGGGGGGGHHHHH
T ss_pred             cccCCCCeEEEEEECCHHHh-CCCCCCCCCCCCCCCCCeEEeCCCCCCCCCCCccccCCCcC----ccccccHHHHHHHH
Confidence            35789999999999999999 555544431      7999999999986  46889976521    11222378899999


Q ss_pred             ccCCCCccC---CcchhhhhcceeeecCC--CChHHHHHHHHHHHHhcCHHHHHhhCCCCCCCCCccccHHHHHHHHHHH
Q 044555           90 YYWPGLTKT---DLNLWEDQWFAHGSDSP--LVPLDYFQRTIQLRKLVDLVKALGDVGIVPRYKGFTHHKSTYRQGIMKI  164 (222)
Q Consensus        90 ~~Wp~~~~~---~~~fw~hEW~KHGtC~~--~~~~~YF~~al~l~~~~n~~~~L~~~~I~Ps~~~~~~~~~~i~~ai~~~  164 (222)
                      .+||++..+   +..||+|||.|||||++  +++.+||++|++|++++|++++|+++||+|++ ++ |++++|++||+++
T Consensus        78 ~~Wp~l~~~~~~~~~~w~hEW~KHGtC~~~~~~~~~YF~~al~L~~~~n~~~~L~~~~i~p~~-~~-y~~~~i~~al~~~  155 (208)
T d1iyba_          78 QNWPTLACPSGTGSAFWSHEWEKHGTCAENVFDQHGYFKKALDLKNQINLLEILQGAGIHPDG-GF-YSLNSIKNAIRSA  155 (208)
T ss_dssp             HHSCCCCSSCCCSHHHHHHHHHHTGGGGTTTCCHHHHHHHHHHHHHHCCHHHHHHHTTCCSSS-CE-EEHHHHHHHHHHH
T ss_pred             HHHHHhhcccCccHHHHHHhcccceeccCccCCHHHHHHHHHHHHHHcccHHHHHhcccCCCC-ce-eeHHHHHHHHHHh
Confidence            999999754   34699999999999998  89999999999999999999999999999976 77 9999999999999


Q ss_pred             hCCcceEEEeeeCCCCC-eEEEEEEEEecCCCceecCCCCCcCCCCCCCCeEecCC
Q 044555          165 TGHNNTILKCYSSKRGH-LLSEVMLCADADARNFIDCNPEEFQQQNCGPDILFSKG  219 (222)
Q Consensus       165 ~g~~~~~l~C~~~~~~~-~L~EI~iC~~~~~~~~i~Cp~~~~~~~~C~~~i~~p~~  219 (222)
                      +|.. |.|+|..+.+++ +|+||+||||+++..+|+||...  ..+||++|+||+|
T Consensus       156 ~g~~-~~l~C~~~~~~~~~L~Ei~iC~~~~~~~~~~Cp~~~--~~~C~~~i~~P~f  208 (208)
T d1iyba_         156 IGYA-PGIECNVDESGNSQLYQIYICVDGSGSNLIECPIFP--RGKCGSSIEFPTF  208 (208)
T ss_dssp             HSSC-CEEEEEECTTCCEEEEEEEEEEETTSSSBCCCSCCC--CCCCCSEEECCCC
T ss_pred             hCCC-ccEEEEEcCCCCEEEEEEEEEEeCCcCceeECCCCC--CCCCCCceEcCCC
Confidence            9999 999999877766 99999999999977799999754  4579999999997
>d1ucda_ d.124.1.1 (A:) Ribonuclease MC1 {Bitter gourd (Momordica charantia) [TaxId: 3673]} Back     information, alignment and structure
>d1iooa_ d.124.1.1 (A:) Gemetophytic self-incompatibility associated SF11-RNase {Winged tobacco (Nicotiana alata) [TaxId: 4087]} Back     information, alignment and structure
>d1sgla_ d.124.1.1 (A:) Trichomaglin {Gourd (Trichosanthes lepiniana) [TaxId: 282652]} Back     information, alignment and structure
>d1jy5a_ d.124.1.1 (A:) RNase-related protein {Hedge bindweed (Calystegia sepium) [TaxId: 47519]} Back     information, alignment and structure
>d1iqqa_ d.124.1.1 (A:) S3-RNase {Japanese pear (Pyrus pyrifolia) [TaxId: 3767]} Back     information, alignment and structure
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId: 4844]} Back     information, alignment and structure