Citrus Sinensis ID: 044558

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------
MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHSEDFARSDSGSVPAVVSLSKM
ccccccccEEEEEEccccEEEEEcccccEEEcccccccccEEEEEEEcccccEEEEEcccccEEccccccccccccccEEEEccccccccccccccEEEEEEEcccEEEEEcccccEEEccccccccccEEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEccccc
ccccccccEEEEEcccccEEEEcccccEEEEccccccccEEEEEEEcccccEEEEEEcccccEEEcccccccccccccEEEEEcccccccccccccEEEEEcccccEEEEEEccccEEEcccccccccccEEEEcccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccEEEHccc
MEFFNKAKAVRLRSHLGKylvanddeetvrqsrkgssseaRWTVEFVqdnchlirlksCYNKyltaseepflsgltgkkvvqtstsasssensdrciewepvtsgfevkfrtrdgkflranggtppwrnsithdvphrtatqdwvlwGVDIvdildfeslsnceSFASslsncsshsedfarsdsgsvpavvslskm
meffnkakavrlrshlgkylvanddeetvrqsrkgsssearwtvefvqdnchlirLKSCYNKYLTASEEPFLSGLTGKKVVQTstsasssensdrciewepvtsgfevkfrtrdgkflranggtppwrnsithdvphrtATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHsedfarsdsgsvpavvslskm
MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTstsasssensDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHSEDFARSDSGSVPAVVSLSKM
***********LRSHLGKYLV*******************RWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGL********************CIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCE*********************************
MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIV******************************************S**
MEFFNKAKAVRLRSHLGKYLVANDD***************RWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKK*****************IEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCES********************************
*EFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDF****************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHSEDFARSDSGSVPAVVSLSKM
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
225452660 549 PREDICTED: uncharacterized protein LOC10 0.913 0.327 0.652 3e-63
147774254 549 hypothetical protein VITISV_040519 [Viti 0.913 0.327 0.652 5e-63
296087772 552 unnamed protein product [Vitis vinifera] 0.913 0.326 0.652 8e-63
224080015214 predicted protein [Populus trichocarpa] 0.928 0.855 0.627 9e-60
359473294 494 PREDICTED: uncharacterized protein LOC10 0.756 0.301 0.655 3e-54
296086446 736 unnamed protein product [Vitis vinifera] 0.756 0.202 0.655 4e-54
224092858175 predicted protein [Populus trichocarpa] 0.873 0.982 0.619 4e-54
147833683 496 hypothetical protein VITISV_030649 [Viti 0.756 0.300 0.649 8e-54
357486455 304 hypothetical protein MTR_5g037540 [Medic 0.837 0.542 0.564 6e-53
224100431 302 predicted protein [Populus trichocarpa] 0.862 0.562 0.578 8e-53
>gi|225452660|ref|XP_002276619.1| PREDICTED: uncharacterized protein LOC100267969 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  246 bits (629), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 122/187 (65%), Positives = 140/187 (74%), Gaps = 7/187 (3%)

Query: 1   MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCY 60
           MEFFN AKA+RLRSHL KYLVA DDEETV QSR GSS +ARW VEFVQD  ++IRLK CY
Sbjct: 1   MEFFNNAKAIRLRSHLNKYLVAADDEETVWQSRTGSSRQARWAVEFVQDKANVIRLKGCY 60

Query: 61  NKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRA 120
            +YLTAS+E FL G TG+KVVQT  ++      D   EWEP+  GF++K R + GKFLRA
Sbjct: 61  GRYLTASDEVFLLGWTGRKVVQTLPTS----KMDPSTEWEPIKEGFQLKLRAKGGKFLRA 116

Query: 121 NGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDILDFESLSNCESFASSLSNCSSHSEDF 180
           NGGTPPW+NSITHD+P RTATQDWVLW VDIVDI   ES +N  S ASS    SS  +DF
Sbjct: 117 NGGTPPWKNSITHDIPQRTATQDWVLWSVDIVDITHSESPANYVSRASSF---SSQPDDF 173

Query: 181 ARSDSGS 187
             SD+GS
Sbjct: 174 TCSDTGS 180

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|147774254|emb|CAN76953.1| hypothetical protein VITISV_040519 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296087772|emb|CBI35028.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224080015|ref|XP_002305991.1| predicted protein [Populus trichocarpa] gi|222848955|gb|EEE86502.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359473294|ref|XP_002274433.2| PREDICTED: uncharacterized protein LOC100257102 [Vitis vinifera] Back     alignment and taxonomy information
>gi|296086446|emb|CBI32035.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224092858|ref|XP_002334868.1| predicted protein [Populus trichocarpa] gi|224140911|ref|XP_002323821.1| predicted protein [Populus trichocarpa] gi|222831828|gb|EEE70305.1| predicted protein [Populus trichocarpa] gi|222866823|gb|EEF03954.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147833683|emb|CAN62089.1| hypothetical protein VITISV_030649 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357486455|ref|XP_003613515.1| hypothetical protein MTR_5g037540 [Medicago truncatula] gi|355514850|gb|AES96473.1| hypothetical protein MTR_5g037540 [Medicago truncatula] Back     alignment and taxonomy information
>gi|224100431|ref|XP_002311873.1| predicted protein [Populus trichocarpa] gi|222851693|gb|EEE89240.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query197
TAIR|locus:2205744 519 AT1G27100 "AT1G27100" [Arabido 0.761 0.289 0.606 6e-48
TAIR|locus:2025876 300 AT1G59710 "AT1G59710" [Arabido 0.761 0.5 0.6 3.3e-47
TAIR|locus:2095547 335 AT3G28630 "AT3G28630" [Arabido 0.746 0.438 0.575 8.1e-44
TAIR|locus:1006230249 292 AT3G01311 "AT3G01311" [Arabido 0.868 0.585 0.5 5.9e-41
TAIR|locus:2196764397 AT1G69900 "AT1G69900" [Arabido 0.761 0.377 0.573 1.6e-40
TAIR|locus:2196774279 AT1G69890 "AT1G69890" [Arabido 0.746 0.526 0.541 1.3e-38
TAIR|locus:2205744 AT1G27100 "AT1G27100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 94/155 (60%), Positives = 114/155 (73%)

Query:     1 MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCY 60
             MEFF KAKA+R+R+   KYL A+DDEETV Q+R GS+  ARWTVE V+D+ H+IRLKSCY
Sbjct:   227 MEFFQKAKAIRMRNSHNKYLTADDDEETVTQNRNGSTKNARWTVEPVRDSFHVIRLKSCY 286

Query:    61 NKYLTASEEPFLSGLTGKKVVQTXXXXXXXXXXDRCIEWEPVTSGFEVKFRTRDGKFLRA 120
              KYLTAS E FL G TGKKV+Q           D  +EWEP+  G ++K RTR G +LR 
Sbjct:   287 GKYLTASNERFLLGATGKKVIQLKLSRV-----DSSVEWEPLREGSKIKLRTRSGNYLRG 341

Query:   121 NGGTPPWRNSITHDVPHRTATQDWVLWGVDIVDIL 155
             NGG PPWRNS+THDVPH +ATQD + W VD+V+IL
Sbjct:   342 NGGLPPWRNSVTHDVPHLSATQDSISWDVDVVEIL 376
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0005773 "vacuole" evidence=IDA
GO:0006612 "protein targeting to membrane" evidence=RCA
GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA
GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA
TAIR|locus:2025876 AT1G59710 "AT1G59710" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2095547 AT3G28630 "AT3G28630" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1006230249 AT3G01311 "AT3G01311" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196764 AT1G69900 "AT1G69900" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2196774 AT1G69890 "AT1G69890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
pfam04601142 pfam04601, DUF569, Protein of unknown function (DU 1e-79
cd00257119 cd00257, Fascin, Fascin-like domain; members inclu 0.001
>gnl|CDD|113374 pfam04601, DUF569, Protein of unknown function (DUF569) Back     alignment and domain information 
 Score =  233 bits (595), Expect = 1e-79
 Identities = 100/147 (68%), Positives = 110/147 (74%), Gaps = 5/147 (3%)

Query: 1   MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCY 60
           ME FNKAKAVRLRSH  KYLVA++DEETV QSR GSS  ARWTVE V  +  +IRLKSCY
Sbjct: 1   MEIFNKAKAVRLRSHHDKYLVADEDEETVTQSRNGSSKRARWTVEPVPGSPKVIRLKSCY 60

Query: 61  NKYLTASEEPFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRA 120
            KYLTAS EPFL G TGKKV QT          D   EWEPV  G +VK +TR G +LRA
Sbjct: 61  GKYLTASNEPFLLGATGKKVTQTKPF-----RLDSSTEWEPVREGSQVKLKTRYGNYLRA 115

Query: 121 NGGTPPWRNSITHDVPHRTATQDWVLW 147
           NGG PPWRNS+THD+PHR+ATQDWVLW
Sbjct: 116 NGGLPPWRNSVTHDIPHRSATQDWVLW 142

Family of hypothetical proteins. Some family members contain a two copies of the region. Length = 142
>gnl|CDD|238160 cd00257, Fascin, Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 197
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 100.0
cd00257119 Fascin Fascin-like domain; members include actin-b 99.26
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 98.77
cd00257119 Fascin Fascin-like domain; members include actin-b 98.64
PF04601142 DUF569: Protein of unknown function (DUF569); Inte 98.61
PF06268111 Fascin: Fascin domain; InterPro: IPR022768 This fa 98.17
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 97.92
PF06229191 FRG1: FRG1-like family; InterPro: IPR010414 This e 97.66
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 96.99
KOG3962246 consensus Predicted actin-bundling protein [Cytosk 96.62
cd00058123 FGF Acidic and basic fibroblast growth factor fami 96.22
smart00442126 FGF Acidic and basic fibroblast growth factor fami 96.17
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 95.45
PF00167122 FGF: Fibroblast growth factor; InterPro: IPR002348 94.61
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 93.67
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 93.22
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 92.82
cd00058123 FGF Acidic and basic fibroblast growth factor fami 92.63
PF07468153 Agglutinin: Agglutinin; InterPro: IPR008998 Agglut 92.06
PF05270142 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterP 91.26
PF14200105 RicinB_lectin_2: Ricin-type beta-trefoil lectin do 90.68
smart00791139 Agglutinin Amaranthus caudatus agglutinin or amara 90.34
smart0047257 MIR Domain in ryanodine and inositol trisphosphate 89.44
smart00442126 FGF Acidic and basic fibroblast growth factor fami 89.26
COG1928 699 PMT1 Dolichyl-phosphate-mannose--protein O-mannosy 88.75
KOG3885155 consensus Fibroblast growth factor [Signal transdu 83.3
KOG3359 723 consensus Dolichyl-phosphate-mannose:protein O-man 80.86
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information 
Probab=100.00  E-value=2.3e-61  Score=389.01  Aligned_cols=142  Identities=61%  Similarity=1.046  Sum_probs=137.9

Q ss_pred             CCCCCCCCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceE
Q 044558            1 MEFFNKAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKV   80 (197)
Q Consensus         1 ME~F~d~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~v   80 (197)
                      ||+|+|++||||||++||||+|||||++|+|+++++++||+|+||+++++.++|+|||||||||+||+.+|++|++|++|
T Consensus         1 Me~F~d~~~VRLRS~~~kYL~ADeDg~~Vs~~~~~~s~na~W~Ve~v~~~~~~v~L~saYGrYL~as~~~~~lG~~G~~v   80 (142)
T PF04601_consen    1 MEFFPDGKHVRLRSHHGKYLHADEDGEGVSQDRRGASLNAAWTVERVPGSPNYVRLRSAYGRYLAASDEPALLGHTGRRV   80 (142)
T ss_pred             CCccCCCCEEEEEecCCCEEEEcCCCCeEEECCCCCCCcceEEEEEecCCCCEEEEeeccCceEeccCCcCCCCCCCCEE
Confidence            99999999999999999999999999999999999999999999999776799999999999999999999999999999


Q ss_pred             EeecCCCCCCCCCCCCceeeEeecCCEEEEEcCCCceeccCCCCCCCcceEEEeCCCCCcccCeEeE
Q 044558           81 VQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGTPPWRNSITHDVPHRTATQDWVLW  147 (197)
Q Consensus        81 vq~~~~~~~~~~~d~~i~W~~~~~g~~v~Lr~~~gryLRANG~~~pwr~~VTvD~~~~~~~~~~~~W  147 (197)
                      +|+++++     .|..+||+|+++|++|+||+++||||||||+++||||+||||+|++++|++||+|
T Consensus        81 ~Q~~~~~-----~d~~~~Wepvr~g~~V~Lr~~~gr~LRANG~~~~Wrn~VT~D~~~~s~~~~wv~w  142 (142)
T PF04601_consen   81 VQTDPDR-----LDSSVEWEPVRDGFYVKLRHRSGRYLRANGGYPPWRNSVTVDVPHRSATQDWVLW  142 (142)
T ss_pred             EecCCcc-----CCCCceEEEecCCCEEEEEecCCceEEcCCCCCCCcceEEecCCCCCeEEEEEEC
Confidence            9999877     6889999999999999999999999999999999999999999999999999988

Some family members contain two copies of the region.
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>cd00257 Fascin Fascin-like domain; members include actin-bundling/crosslinking proteins facsin, histoactophilin and singed; identified in sea urchin, Drosophila, Xenopus, rodents, and humans; The fascin-like domain adopts a beta-trefoil topology and contains an internal threefold repeat; the fascin subgroup contains four copies of the domain; Structurally similar to fibroblast growth factor (FGF) Back     alignment and domain information
>PF04601 DUF569: Protein of unknown function (DUF569); InterPro: IPR007679 This is a family of hypothetical proteins Back     alignment and domain information
>PF06268 Fascin: Fascin domain; InterPro: IPR022768 This family consists of several eukaryotic fascin or singed proteins Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF06229 FRG1: FRG1-like family; InterPro: IPR010414 This entry represents Frg1 (FSHD region gene 1), a protein that is considered to be a candidate for facioscapulohumeral muscular dystrophy (FSHD) Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>KOG3962 consensus Predicted actin-bundling protein [Cytoskeleton] Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>PF00167 FGF: Fibroblast growth factor; InterPro: IPR002348 The interleukin-1 (IL1) and heparin-binding growth factor (HBGF) families share low sequence similarity (about 25% []) but have very similar structures Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>cd00058 FGF Acidic and basic fibroblast growth factor family; FGFs are mitogens, which stimulate growth or differentiation of cells of mesodermal or neuroectodermal origin Back     alignment and domain information
>PF07468 Agglutinin: Agglutinin; InterPro: IPR008998 Agglutinins are sugar-specific lectins that can agglutinate erythrocytes and other cell types Back     alignment and domain information
>PF05270 AbfB: Alpha-L-arabinofuranosidase B (ABFB); InterPro: IPR007934 This family consists of several fungal alpha-L-arabinofuranosidase B proteins Back     alignment and domain information
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A Back     alignment and domain information
>smart00791 Agglutinin Amaranthus caudatus agglutinin or amaranthin is a lectin from the ancient South American crop, amaranth grain Back     alignment and domain information
>smart00472 MIR Domain in ryanodine and inositol trisphosphate receptors and protein O-mannosyltransferases Back     alignment and domain information
>smart00442 FGF Acidic and basic fibroblast growth factor family Back     alignment and domain information
>COG1928 PMT1 Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3885 consensus Fibroblast growth factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3359 consensus Dolichyl-phosphate-mannose:protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query197
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 2e-08
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 2e-07
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 2e-04
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 8e-05
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
 Score = 52.4 bits (125), Expect = 2e-08
 Identities = 19/115 (16%), Positives = 28/115 (24%), Gaps = 14/115 (12%)

Query: 12  LRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDN--CHLIRLKSCYNKYLTASEE 69
           L +   KYL A      V  S      +  WT+E   D      + L+S   +YL A + 
Sbjct: 16  LINCGNKYLTAEAFGFKVNASASSLKKKQIWTLEQPPDEAGSAAVCLRSHLGRYLAADK- 74

Query: 70  PFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANGGT 124
               G     V                        G          ++       
Sbjct: 75  ---DG----NVTCEREVPGPDC----RFLIVAHDDGRWSLQSEAHRRYFGGTEDR 118
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* Length = 493 Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Length = 155 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
3llp_A 493 Fascin; beta-trefoil, actin bundling protein, canc 99.77
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.72
2yug_A155 Protein FRG1; spliceosome, facioscapulohumeral mus 98.62
3llp_A493 Fascin; beta-trefoil, actin bundling protein, canc 98.23
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 97.97
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 97.81
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 97.31
3q7x_A132 De novo designed beta-trefoil architecture with S 97.15
3nbc_A148 Ricin B-like lectin; lactose, sugar BIND protein; 96.57
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 96.51
1q1u_A144 FGF-12, fibrobast growth factor homologous factor 96.5
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 96.42
3vsf_A526 Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactana 96.35
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 96.34
3p6i_A142 De novo designed beta-trefoil architecture with S 96.29
1nun_A145 Fibroblast growth factor-10; beta-trefoil fold, im 96.22
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 96.19
1jlx_A 303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 96.14
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 95.84
1ihk_A174 GLIA-activating factor; B-trefoil fold, hormone/gr 95.71
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 95.66
3f1r_A211 FGF-20, fibroblast growth factor 20; beta-trefoil 95.52
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 95.51
3ef2_A293 Agglutinin, lectin; beta-trefoil, calcium-binding, 95.39
3hbw_A193 Fibroblast growth factor 13; beta-trefoil fold, al 95.2
1t9f_A187 Protein 1D10; structural genomics, PSI, protein st 95.19
3p6i_A142 De novo designed beta-trefoil architecture with S 95.19
3q7x_A132 De novo designed beta-trefoil architecture with S 95.04
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 94.71
3snv_A143 Symfoil-4T/permutation #1 synthetic protein; beta- 94.64
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 94.46
3phz_A286 Ricin B-related lectin; beta trefoil, saccharide b 94.27
2xoa_A 559 Ryanodine receptor 1; metal transport, calcium cha 93.95
2p23_A194 FGF-19, fibroblast growth factor 19; atypical beta 93.91
3p6j_A142 De novo designed beta-trefoil architecture with S 93.78
3uj4_A 604 Inositol 1,4,5-trisphosphate receptor type 1; APO- 93.42
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 93.37
1jlx_A303 Agglutinin, amaranthin, ACA; complex (lectin/sacch 93.05
3mal_A199 Stromal cell-derived factor 2-like protein; trefoi 92.94
3kmv_A157 Alpha-L-arabinofuranosidase B; protein:carboydrate 91.89
2x2s_A153 Agglutinin, agglutinin SSA; fungal lectin, beta-tr 91.76
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 91.38
3p6j_A142 De novo designed beta-trefoil architecture with S 90.78
3aj6_A286 Main hemagglutinin component; toxin, beta-trefoil; 90.41
1pwa_A162 FGF-19, fibroblast growth factor-19; beta trefoil, 89.14
2fdb_M164 FGF8B, fibroblast growth factor 8 isoform B; beta- 88.96
1hcd_A118 Hisactophilin; actin binding; NMR {Dictyostelium d 88.27
1n4k_A 381 Inositol 1,4,5-trisphosphate receptor type 1; IP3 87.51
2p39_A155 Fibroblast growth factor 23; atypical beta-trefoil 87.4
3pg0_A165 Threefoil; symmetric design, beta-trefoil, enginee 86.98
1qql_A140 Fibroblast growth factor 7/1 chimera; beta-trefoil 86.36
2p23_A194 FGF-19, fibroblast growth factor 19; atypical beta 84.2
1ijt_A128 FGF4, fibroblast growth factor 4; B-trefoil fold, 82.49
1bfg_A146 Basic fibroblast growth factor; 1.60A {Homo sapien 80.97
1rg8_A146 Heparin-binding growth factor 1; beta-trefoil, hor 80.21
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
Probab=99.77  E-value=1.5e-19  Score=168.97  Aligned_cols=117  Identities=27%  Similarity=0.390  Sum_probs=99.8

Q ss_pred             CCCEEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEecc-CCCCcccCCCCC---C--CCCCCcce
Q 044558            6 KAKAVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKS-CYNKYLTASEEP---F--LSGLTGKK   79 (197)
Q Consensus         6 d~~~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~Lqs-ayGRYL~as~~~---~--~~G~~g~~   79 (197)
                      ++..|+||||||+||.||+|| .|+|+.+..++++.|.++..  .+++|.||+ +|||||+++++.   +  .++..++|
T Consensus        56 ~~~~~~lks~~G~yL~~d~~G-~v~~~~~~~~~~~~f~~~~~--~dG~w~lq~~~~g~yl~~~~~~~~c~~~~~~~~~~w  132 (493)
T 3llp_A           56 GSAAVCLRSHLGRYLAADKDG-NVTCEREVPGPDCRFLIVAH--DDGRWSLQSEAHRRYFGGTEDRLSCFAQTVSPAEKW  132 (493)
T ss_dssp             CCCCBCEECTTSCEEEECTTS-CEEEEESSCCGGGCEEEEEC--TTSEEEEEETTTCCEEEEEBTEEEEEESSCCGGGCE
T ss_pred             CccEEEEecCCCcEeecCCCC-cEEeCcccCCCCceEEEEEC--CCCeEEEEEcccCceecCCCceEEEEeccCCcccee
Confidence            356899999999999999999 59999999999999999874  569999999 999999999887   2  25778899


Q ss_pred             EEee-------------------cCCCCCCCCCCCCceeeEee------cCCEEEEEcCCCceeccCCCCC
Q 044558           80 VVQT-------------------STSASSSENSDRCIEWEPVT------SGFEVKFRTRDGKFLRANGGTP  125 (197)
Q Consensus        80 vvq~-------------------~~~~~~~~~~d~~i~W~~~~------~g~~v~Lr~~~gryLRANG~~~  125 (197)
                      ++|+                   +++..+++.+|.+|||+++.      .++.|.|+++++|||+++|++.
T Consensus       133 ~~~la~hpqv~l~s~~r~~y~~l~~~~~~~~~~d~~~pwg~d~~~~l~f~~g~y~l~t~~~~fL~~dg~L~  203 (493)
T 3llp_A          133 SVHIAMHPQVNIYSVTRKRYAHLSARPADEIAVDRDVPWGVDSLITLAFQDQRYSVQTADHRFLRHDGRLV  203 (493)
T ss_dssp             EEEECSCCEEEEEETTTTEEEEEEC--CCEEEEEESSCCSGGGCEEEEECSSSEEEECTTSCEECTTSCEE
T ss_pred             eeeeccCcEEEEeecccceeEEcCCCCCCeEEECCCCCCCCCeeEEEEECCCcEEEEECCCceECCCCccc
Confidence            9988                   22312457789999999975      5789999999999999999874
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>2yug_A Protein FRG1; spliceosome, facioscapulohumeral muscular dystrophy, FSHD1, beta-trefoil, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>3llp_A Fascin; beta-trefoil, actin bundling protein, cancer, metastasis, CE migration, acetylation, actin-binding, cytoplasm, phosphopr protein binding; HET: EPE; 1.80A {Homo sapiens} PDB: 1dfc_A* 3lna_A* 3o8k_A* 3p53_A* 4gov_A 4goy_A 4gp3_A 4gp0_A* Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>3nbc_A Ricin B-like lectin; lactose, sugar BIND protein; HET: LAT; 1.01A {Clitocybe nebularis} PDB: 3nbd_A* 3nbe_A* Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure
>1q1u_A FGF-12, fibrobast growth factor homologous factor 1, FGF12B; human, hormone/growth factor complex; 1.70A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>3vsf_A Ricin B lectin; GH43 CBM13, EXO-beta-1,3-galactanase, sugar binding protein; 2.76A {Clostridium thermocellum} PDB: 3vsz_A* 3vt0_A* 3vt1_B* 3vt2_A* Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>1nun_A Fibroblast growth factor-10; beta-trefoil fold, immunoglobulin-like domain, hormone/growth factor/membrane protein complex; HET: 15P; 2.90A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1ihk_A GLIA-activating factor; B-trefoil fold, hormone/growth factor complex; 2.20A {Homo sapiens} SCOP: b.42.1.1 PDB: 1g82_A* Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3f1r_A FGF-20, fibroblast growth factor 20; beta-trefoil fold, polymorphism, secreted, hormone; 2.50A {Homo sapiens} Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>3ef2_A Agglutinin, lectin; beta-trefoil, calcium-binding, carbohydrate-binding, sugar-binding, sugar binding protein; HET: FUC GAL GLA; 1.80A {Marasmius oreades} PDB: 2iho_A* Back     alignment and structure
>3hbw_A Fibroblast growth factor 13; beta-trefoil fold, alternative splicing, polymorphism, hormone; 1.90A {Homo sapiens} PDB: 4dck_C Back     alignment and structure
>1t9f_A Protein 1D10; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 2.00A {Caenorhabditis elegans} SCOP: b.42.6.1 Back     alignment and structure
>3p6i_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; HET: SO4; 1.32A {Synthetic} PDB: 3ogf_A Back     alignment and structure
>3q7x_A De novo designed beta-trefoil architecture with S primary structure; beta-terfoil, de novo protein; 1.40A {Synthetic} PDB: 3q7w_A 3o4d_A 3q7y_A 3o4b_A 3o4c_A 3o4a_A* 3o49_A Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3snv_A Symfoil-4T/permutation #1 synthetic protein; beta-trefoil, de novo protein; 2.20A {Homo sapiens} Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>3phz_A Ricin B-related lectin; beta trefoil, saccharide binding lectin, 2,6-sialyl-lactosam sugar binding protein; HET: NAG GAL SIA; 1.70A {Polyporus squamosus} Back     alignment and structure
>2xoa_A Ryanodine receptor 1; metal transport, calcium channel, ION channel, membrane PROT malignant hyperthermia, cardiac arrhythmia; 2.50A {Oryctolagus cuniculus} Back     alignment and structure
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3uj4_A Inositol 1,4,5-trisphosphate receptor type 1; APO-state, suppressor domain, binding core domain, signaling protein; 3.00A {Rattus norvegicus} PDB: 3uj0_A 3t8s_A* Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1jlx_A Agglutinin, amaranthin, ACA; complex (lectin/saccharide), T-disaccharide homodimer, bivalent, lectin; HET: GAL A2G; 2.20A {Amaranthus caudatus} SCOP: b.42.3.1 b.42.3.1 PDB: 1jly_A Back     alignment and structure
>3mal_A Stromal cell-derived factor 2-like protein; trefoil fold, MIR motifs, unfolded protein response, putativ binding protein, plant protein; 1.95A {Arabidopsis thaliana} SCOP: b.42.6.0 Back     alignment and structure
>3kmv_A Alpha-L-arabinofuranosidase B; protein:carboydrate interactions, carbohydrate-binding modul trefoil fold, CBM42, sugar binding protein; 1.80A {Clostridium thermocellum} Back     alignment and structure
>2x2s_A Agglutinin, agglutinin SSA; fungal lectin, beta-trefoil domain, cell adhesion; 1.60A {Sclerotinia sclerotiorum} PDB: 2x2t_A* Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>3p6j_A De novo designed beta-trefoil architecture with S primary structure; de novo protein; 1.35A {Synthetic} Back     alignment and structure
>3aj6_A Main hemagglutinin component; toxin, beta-trefoil; HET: NGA; 1.48A {Clostridium botulinum} PDB: 1qxm_A 3aj5_A* 2ehm_A* 2ehi_A* 2ehn_A* 3ah1_A* 3ah2_A* 3ah4_A* 2e4m_A Back     alignment and structure
>1pwa_A FGF-19, fibroblast growth factor-19; beta trefoil, disulphide bonds, hormone-growth factor comple; 1.30A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>2fdb_M FGF8B, fibroblast growth factor 8 isoform B; beta-trefoil fold, immunoglobulin fold, hormone/growth factor/transferase complex; 2.28A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1hcd_A Hisactophilin; actin binding; NMR {Dictyostelium discoideum} SCOP: b.42.5.2 PDB: 1hce_A Back     alignment and structure
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1 Back     alignment and structure
>2p39_A Fibroblast growth factor 23; atypical beta-trefoil fold, signaling protein; HET: SCR; 1.50A {Homo sapiens} Back     alignment and structure
>3pg0_A Threefoil; symmetric design, beta-trefoil, engineered module, sugar BIN NOVO protein; HET: BTB GOL; 1.62A {Artificial gene} Back     alignment and structure
>1qql_A Fibroblast growth factor 7/1 chimera; beta-trefoil, hormone/growth factor complex; 2.30A {Rattus norvegicus} SCOP: b.42.1.1 PDB: 1qqk_A Back     alignment and structure
>2p23_A FGF-19, fibroblast growth factor 19; atypical beta-trefoil fold, signaling protein; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1ijt_A FGF4, fibroblast growth factor 4; B-trefoil fold, hormone/growth factor complex; 1.80A {Homo sapiens} SCOP: b.42.1.1 Back     alignment and structure
>1bfg_A Basic fibroblast growth factor; 1.60A {Homo sapiens} SCOP: b.42.1.1 PDB: 1iil_A 1ii4_A 1bas_A 1bla_A 1bld_A 1bfb_A* 1bfc_A* 4fgf_A 1fga_A 2fgf_A 1ev2_A 1cvs_A 1fq9_A* 1bff_A 2bfh_A Back     alignment and structure
>1rg8_A Heparin-binding growth factor 1; beta-trefoil, hormone/growth factor complex; 1.10A {Homo sapiens} SCOP: b.42.1.1 PDB: 1jqz_A 3fjb_A 1jt3_A 1jt4_A 1jtc_A 3baq_A 3bah_A 3fja_A 3fj9_A 3fjk_A 3hom_A 3fjc_A 3ba5_A 3fjh_A 1jt5_A 1k5v_A 3fjj_A 1jy0_A 3bao_A 3fjf_A ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 197
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 7e-20
d1hcda_118 b.42.5.2 (A:) Histidine-rich actin-binding protein 7e-04
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 3e-11
d1dfca1133 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens 5e-04
d1dfca3123 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens 9e-05
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 78.8 bits (194), Expect = 7e-20
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 20/126 (15%)

Query: 10  VRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEE 69
              +SH G +L A  +   V+           + VE    +   + LK+   KYL+  + 
Sbjct: 4   RAFKSHHGHFLSAEGE--AVKTHHGHHDHHTHFHVEN---HGGKVALKTHCGKYLSIGDH 58

Query: 70  PFLSGLTGKKVVQTSTSASSSENSDRCIEWEPVTSGFEVKFRTRDGKFLRA-NGGTPPWR 128
             +          +               +     G +V  +     ++ A + G    +
Sbjct: 59  KQVYL--------SHHLHGDHS------LFHLEHHGGKVSIKGHHHHYISADHHGHVSTK 104

Query: 129 NSITHD 134
               HD
Sbjct: 105 EHHDHD 110
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Length = 118 Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 133 Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Length = 123 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query197
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 99.54
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.33
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 99.15
d1dfca1133 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.95
d1dfca3123 Fascin {Human (Homo sapiens) [TaxId: 9606]} 98.91
d1hcda_118 Histidine-rich actin-binding protein (hisactophili 98.68
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.92
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 97.88
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 97.76
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.69
d1dfca2119 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.54
d1dfca4111 Fascin {Human (Homo sapiens) [TaxId: 9606]} 97.47
d1nuna_139 Fibroblast growth factor-10, FGF10 {Human (Homo sa 97.3
d1q1ua_138 Fibrobast growth factor homologous factor 1 (FHF1b 97.16
d1qqka_132 Keratinocyte growth factor, FGF7 {Rat (Rattus norv 97.05
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 96.6
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 96.51
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 96.37
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 96.32
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 95.92
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 95.75
d1t9fa_178 Hypothetical protein R12E2.13 (1D10) {Caenorhabdit 94.63
d1n4ka2200 IP3 receptor type 1 binding core, domain 1 {Mouse 94.54
d1qxma2138 Hemagglutinin component Ha1 {Clostridium botulinum 93.7
d1pwaa_136 Fibroblast growth factor-19 (FGF19) {Human (Homo s 93.16
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 93.1
d1upsa2131 GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosi 93.02
d1bfga_126 Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 960 92.78
d2fdbm1147 Fibroblast growth factor 8, FGF8 {Human (Homo sapi 92.61
d2ihoa1154 Agglutinin MOA, N-terminal domain {Fairy-ring mush 91.87
d1rg8a_141 Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 96 88.51
d1sr4a_167 Cytolethal distending toxin subunit A {Haemophilus 87.87
d1ijta_128 Fibroblast growth factor 4 (FGF4) {Human (Homo sap 87.73
d1jlxa1153 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 87.43
d1jlxa2146 Agglutinin {Love-lies-bleeding (Amaranthus caudatu 85.2
d1ihka_157 Fibroblast growth factor 9, FGF9 {Human (Homo sapi 83.66
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
class: All beta proteins
fold: beta-Trefoil
superfamily: Actin-crosslinking proteins
family: Histidine-rich actin-binding protein (hisactophilin)
domain: Histidine-rich actin-binding protein (hisactophilin)
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.54  E-value=4.9e-15  Score=112.80  Aligned_cols=95  Identities=19%  Similarity=0.265  Sum_probs=73.9

Q ss_pred             EEEEeecCCCeEEEeCCCCcEEEeCCCCCCCCceEEEEEecCCCeEEeccCCCCcccCCCCCCCCCCCcceEEeecCCCC
Q 044558            9 AVRLRSHLGKYLVANDDEETVRQSRKGSSSEARWTVEFVQDNCHLIRLKSCYNKYLTASEEPFLSGLTGKKVVQTSTSAS   88 (197)
Q Consensus         9 ~VrLRS~~gkYL~ADeDG~~Vs~~~~~~s~na~W~Ve~~~~~~~~v~LqsayGRYL~as~~~~~~G~~g~~vvq~~~~~~   88 (197)
                      -|.|||++||||.||+++  |.+.+..++.++.|.||..   ++.|.||+++|+||.+.+.       |  .+.++.+. 
T Consensus         3 ~~~lrs~~gkyL~a~~~~--v~~~~~~~~~~~~F~ve~~---~g~iaLks~~GkYlsa~~~-------g--~l~~~~~~-   67 (118)
T d1hcda_           3 NRAFKSHHGHFLSAEGEA--VKTHHGHHDHHTHFHVENH---GGKVALKTHCGKYLSIGDH-------K--QVYLSHHL-   67 (118)
T ss_dssp             CSEEESSTTCEEEEETTE--EEEECSCSSCCCCCEEEEE---TTEEEEESSSSCEEEEEET-------T--EEEEECCC-
T ss_pred             cEEeEcCCCcEEeecCCc--eEeeCCCCCCCceEEEEcC---CCEEEEEeCCCCEEEecCC-------C--cEEEeccC-
Confidence            368999999999999775  8888888889999999973   6899999999999998542       2  23344332 


Q ss_pred             CCCCCCCCceeeEeecCCEEEEEcCCCceeccCC
Q 044558           89 SSENSDRCIEWEPVTSGFEVKFRTRDGKFLRANG  122 (197)
Q Consensus        89 ~~~~~d~~i~W~~~~~g~~v~Lr~~~gryLRANG  122 (197)
                          ....=.|.++..++.|.|+..+|+||++.+
T Consensus        68 ----~~~~E~F~ie~~~g~valrs~nGkylsa~~   97 (118)
T d1hcda_          68 ----HGDHSLFHLEHHGGKVSIKGHHHHYISADH   97 (118)
T ss_dssp             ----SSSSSSBEEEEETTEEEEECSTTCEEEECG
T ss_pred             ----CCCceEEEEEECCCEEEEEeCCCCEEEEcC
Confidence                122233556667899999999999999953
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca1 b.42.5.1 (A:1008-1140) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca3 b.42.5.1 (A:1260-1382) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hcda_ b.42.5.2 (A:) Histidine-rich actin-binding protein (hisactophilin) {Dictyostelium discoideum [TaxId: 44689]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca2 b.42.5.1 (A:1141-1259) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dfca4 b.42.5.1 (A:1383-1493) Fascin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1 (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qqka_ b.42.1.1 (A:) Keratinocyte growth factor, FGF7 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1t9fa_ b.42.6.1 (A:) Hypothetical protein R12E2.13 (1D10) {Caenorhabditis elegans [TaxId: 6239]} Back     information, alignment and structure
>d1n4ka2 b.42.6.1 (A:236-435) IP3 receptor type 1 binding core, domain 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1qxma2 b.42.2.1 (A:149-286) Hemagglutinin component Ha1 {Clostridium botulinum D phage [TaxId: 29342]} Back     information, alignment and structure
>d1pwaa_ b.42.1.1 (A:) Fibroblast growth factor-19 (FGF19) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1upsa2 b.42.2.3 (A:290-420) GlcNAc-alpha-1,4-Gal-releasing endo-beta-galactosidase, GngC, C-terminal domain {Clostridium perfringens [TaxId: 1502]} Back     information, alignment and structure
>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdbm1 b.42.1.1 (M:34-180) Fibroblast growth factor 8, FGF8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ihoa1 b.42.2.1 (A:2-155) Agglutinin MOA, N-terminal domain {Fairy-ring mushroom (Marasmius oreades) [TaxId: 181124]} Back     information, alignment and structure
>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sr4a_ b.42.2.1 (A:) Cytolethal distending toxin subunit A {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jlxa1 b.42.3.1 (A:1-153) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1jlxa2 b.42.3.1 (A:154-299) Agglutinin {Love-lies-bleeding (Amaranthus caudatus) [TaxId: 3567]} Back     information, alignment and structure
>d1ihka_ b.42.1.1 (A:) Fibroblast growth factor 9, FGF9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure